Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 104 of 235
Found at i:35851552 original size:13 final size:13
Alignment explanation
Indices: 35851534--35851567 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
35851524 CTCGATAGGG
35851534 ACACACCCGTATA
1 ACACACCCGTATA
*
35851547 ACACACCCGTATG
1 ACACACCCGTATA
35851560 ACACACCC
1 ACACACCC
35851568 ATGTGCGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.35, C:0.44, G:0.09, T:0.12
Consensus pattern (13 bp):
ACACACCCGTATA
Found at i:35854687 original size:27 final size:27
Alignment explanation
Indices: 35854657--35854714 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
35854647 GTGAATAAAA
35854657 TGTAAGATGATATATTCGAATGATGCT
1 TGTAAGATGATATATTCGAATGATGCT
*
35854684 TGTAGGATGATATATTCGAATGATGCT
1 TGTAAGATGATATATTCGAATGATGCT
35854711 TGTA
1 TGTA
35854715 CCTAATTTGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.38
Consensus pattern (27 bp):
TGTAAGATGATATATTCGAATGATGCT
Found at i:35854836 original size:45 final size:45
Alignment explanation
Indices: 35854769--35854988 Score: 268
Period size: 45 Copynumber: 5.0 Consensus size: 45
35854759 TATCGTACAG
* *
35854769 TACTATTCGAGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * **
35854814 TATTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCTAGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
35854859 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
35854904 TACTATTCGGGCCTTCGAGCCTAGCAAGCTATAATGTCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * **
35854949 TGA-TA-TCGAG-CTTCGAGCCTAGCAGGAGA-AATGCCGGTGA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
35854989 ATAAATTCGG
Statistics
Matches: 153, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
42 10 0.07
43 16 0.10
44 4 0.03
45 122 0.80
46 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:35860458 original size:63 final size:64
Alignment explanation
Indices: 35860304--35860473 Score: 175
Period size: 63 Copynumber: 2.7 Consensus size: 64
35860294 CTCGTGTGTC
* * **
35860304 TTACATGGCCTA-ACACACGGTCATGTCCTCCGCCCATGTGATCATTATTTTGTAATCAGAGAG
1 TTACATGTCCTAGACACACGCTCATGTCCTTGGCCCATGTGATCATTATTTTGTAATCAGAGAG
* * * * * * *
35860367 TTACATGGT-CTGGACATACGCCCGTGTCCTTGGCCCATGTGATC-TTATTTTGTTATTAGTGAG
1 TTACAT-GTCCTAGACACACGCTCATGTCCTTGGCCCATGTGATCATTATTTTGTAATCAGAGAG
** * *
35860430 TTACATGTCCTAGACACACATTCATGTCCTTGACCCGTGTGATC
1 TTACATGTCCTAGACACACGCTCATGTCCTTGGCCCATGTGATC
35860474 CTACACTAAC
Statistics
Matches: 85, Mismatches: 19, Indels: 6
0.77 0.17 0.05
Matches are distributed among these distances:
62 2 0.02
63 57 0.67
64 26 0.31
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.34
Consensus pattern (64 bp):
TTACATGTCCTAGACACACGCTCATGTCCTTGGCCCATGTGATCATTATTTTGTAATCAGAGAG
Found at i:35860773 original size:12 final size:12
Alignment explanation
Indices: 35860758--35860782 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
35860748 ATGTCAAAAC
35860758 TTTTATCAATAA
1 TTTTATCAATAA
35860770 TTTTATCAATAA
1 TTTTATCAATAA
35860782 T
1 T
35860783 CGGATTCTCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTTATCAATAA
Found at i:35862392 original size:19 final size:18
Alignment explanation
Indices: 35862359--35862400 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
35862349 ATATATAATT
*
35862359 TAAAATAACATTAAAATG
1 TAAAATAAAATTAAAATG
*
35862377 TAAAACTAAAATTAAAATT
1 TAAAA-TAAAATTAAAATG
35862396 TAAAA
1 TAAAA
35862401 ACAAACCAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.29
Consensus pattern (18 bp):
TAAAATAAAATTAAAATG
Found at i:35863759 original size:19 final size:19
Alignment explanation
Indices: 35863737--35863774 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
35863727 GTTTTTATGA
* *
35863737 AAATTATTTATTTTTCTGG
1 AAATAATTTACTTTTCTGG
35863756 AAATAATTTACTTTTCTGG
1 AAATAATTTACTTTTCTGG
35863775 TGTTTGGATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.08, G:0.11, T:0.53
Consensus pattern (19 bp):
AAATAATTTACTTTTCTGG
Found at i:35863876 original size:18 final size:18
Alignment explanation
Indices: 35863850--35863982 Score: 257
Period size: 18 Copynumber: 7.4 Consensus size: 18
35863840 AAAAGCTGTT
*
35863850 TTTACATATATTAATAAA
1 TTTATATATATTAATAAA
35863868 TTTATATATATTAATAAA
1 TTTATATATATTAATAAA
35863886 TTTATATATATTAATAAA
1 TTTATATATATTAATAAA
35863904 TTTATATATATTAATAAA
1 TTTATATATATTAATAAA
35863922 TTTATATATATTAATAAA
1 TTTATATATATTAATAAA
35863940 TTTATATATATTAATAAA
1 TTTATATATATTAATAAA
35863958 TTTATATATATTAATAAA
1 TTTATATATATTAATAAA
35863976 TTTATAT
1 TTTATAT
35863983 TTTAAATTAT
Statistics
Matches: 114, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
18 114 1.00
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (18 bp):
TTTATATATATTAATAAA
Found at i:35864443 original size:9 final size:9
Alignment explanation
Indices: 35864431--35864473 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
35864421 TAAAATTAAT
35864431 CGAATTACC
1 CGAATTACC
35864440 CGAATTACC
1 CGAATTACC
*
35864449 CGAATTGCC
1 CGAATTACC
*
35864458 CGAATTAAC
1 CGAATTACC
35864467 CGAATTA
1 CGAATTA
35864474 TTTGTATAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.35, C:0.28, G:0.14, T:0.23
Consensus pattern (9 bp):
CGAATTACC
Found at i:35864452 original size:18 final size:18
Alignment explanation
Indices: 35864424--35864473 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
35864414 ATAAGTATAA
*
35864424 AATTAATCGAATTACCCG
1 AATTAACCGAATTACCCG
* *
35864442 AATTACCCGAATTGCCCG
1 AATTAACCGAATTACCCG
35864460 AATTAACCGAATTA
1 AATTAACCGAATTA
35864474 TTTGTATAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.26
Consensus pattern (18 bp):
AATTAACCGAATTACCCG
Found at i:35864507 original size:5 final size:6
Alignment explanation
Indices: 35864492--35864532 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
35864482 AAATTATATT
*
35864492 TTTTTA TTTTTA TTTTTA GTTTTAGA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTT
35864533 ATTAAATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 22 0.71
7 8 0.26
8 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:35868810 original size:9 final size:9
Alignment explanation
Indices: 35868769--35868920 Score: 69
Period size: 10 Copynumber: 16.0 Consensus size: 9
35868759 CTAAATATAT
35868769 ATTATAAAA
1 ATTATAAAA
* *
35868778 ATTATGAAT
1 ATTATAAAA
*
35868787 GTTATAAATA
1 ATTATAAA-A
35868797 TATTATAAAA
1 -ATTATAAAA
35868807 ATTATAAAAA
1 ATTAT-AAAA
35868817 GATTATAGAAA
1 -ATTATA-AAA
* * *
35868828 GTTTTAAAT
1 ATTATAAAA
*
35868837 ATAATTAAAA
1 ATTA-TAAAA
35868847 AGTTATTAAAA
1 A-TTA-TAAAA
*
35868858 ATAATTAAAA
1 ATTA-TAAAA
35868868 ATTA-AAAA
1 ATTATAAAA
*
35868876 A-T-T-GAA
1 ATTATAAAA
35868882 ATTATAAAAA
1 ATTAT-AAAA
35868892 ATTATTAAAA
1 ATTA-TAAAA
*
35868902 TATTGTAAAA
1 -ATTATAAAA
*
35868912 ATTAGAAAA
1 ATTATAAAA
35868921 TAAAAATTAT
Statistics
Matches: 108, Mismatches: 21, Indels: 28
0.69 0.13 0.18
Matches are distributed among these distances:
6 3 0.03
7 2 0.02
8 6 0.06
9 28 0.26
10 41 0.38
11 28 0.26
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (9 bp):
ATTATAAAA
Found at i:35868855 original size:21 final size:20
Alignment explanation
Indices: 35868825--35868868 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 20
35868815 AAGATTATAG
*
35868825 AAAGTTTTAAATATAATTAA
1 AAAGTTTTAAAAATAATTAA
35868845 AAAGTTATTAAAAATAATTAA
1 AAAGTT-TTAAAAATAATTAA
35868866 AAA
1 AAA
35868869 TTAAAAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (20 bp):
AAAGTTTTAAAAATAATTAA
Found at i:35868893 original size:34 final size:34
Alignment explanation
Indices: 35868867--35868944 Score: 90
Period size: 34 Copynumber: 2.3 Consensus size: 34
35868857 AATAATTAAA
35868867 AATTAAAAAATT-GAAATTATAAAAAATTATTAAA
1 AATTAAAAAATTAGAAATTAT-AAAAATTATTAAA
*
35868901 ATATTGTAAAAATTAGAAA--ATAAAAATTATTAAA
1 A-ATT-AAAAAATTAGAAATTATAAAAATTATTAAA
*
35868935 AAATAAAAAA
1 AATTAAAAAA
35868945 ATTTACTAGT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
32 5 0.13
33 2 0.05
34 15 0.39
35 5 0.13
36 7 0.18
37 4 0.11
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (34 bp):
AATTAAAAAATTAGAAATTATAAAAATTATTAAA
Found at i:35868897 original size:44 final size:45
Alignment explanation
Indices: 35868840--35868938 Score: 130
Period size: 44 Copynumber: 2.2 Consensus size: 45
35868830 TTTAAATATA
* **
35868840 ATTAAAAAGTTATTAAAAATAAT-TAAAAATTAAAAAATTGAAATT
1 ATTAAAAAATTATT-AAAATAATGTAAAAATTAAAAAATAAAAATT
* *
35868885 A-TAAAAAATTATTAAAATATTGTAAAAATTAGAAAATAAAAATT
1 ATTAAAAAATTATTAAAATAATGTAAAAATTAAAAAATAAAAATT
35868929 ATTAAAAAAT
1 ATTAAAAAAT
35868939 AAAAAAATTT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
43 7 0.15
44 31 0.66
45 9 0.19
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (45 bp):
ATTAAAAAATTATTAAAATAATGTAAAAATTAAAAAATAAAAATT
Found at i:35869206 original size:9 final size:9
Alignment explanation
Indices: 35869192--35869323 Score: 54
Period size: 9 Copynumber: 13.8 Consensus size: 9
35869182 ATATATACTT
35869192 TTTTTAATA
1 TTTTTAATA
*
35869201 TTTTTAAAA
1 TTTTTAATA
35869210 TTTTT-ATAA
1 TTTTTAAT-A
*
35869219 TTTTTTTATAA
1 -TTTTTAAT-A
**
35869230 ACTTTAATA
1 TTTTTAATA
*
35869239 CTTTTTAAAA
1 -TTTTTAATA
* *
35869249 TTTTAAATC
1 TTTTTAATA
*
35869258 TTTTAAATAA
1 TTTTTAAT-A
35869268 TTTTTATATGA
1 TTTTTA-AT-A
35869279 TTTTCTTGAA-A
1 -TTT-TT-AATA
35869290 TTTTTAA-A
1 TTTTTAATA
35869298 TTTTTAATTA
1 TTTTTAA-TA
*
35869308 TTTTTTATA
1 TTTTTAATA
*
35869317 ATTTTAA
1 TTTTTAA
35869324 ACGGTTTCTA
Statistics
Matches: 95, Mismatches: 17, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
8 11 0.12
9 38 0.40
10 31 0.33
11 8 0.08
12 3 0.03
13 3 0.03
14 1 0.01
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.61
Consensus pattern (9 bp):
TTTTTAATA
Found at i:35869243 original size:21 final size:20
Alignment explanation
Indices: 35869196--35869244 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
35869186 ATACTTTTTT
* * *
35869196 TAATATTTTTAAAATTTTTA
1 TAATTTTTTTAAAACTTTAA
35869216 TAATTTTTTTATAAACTTTAA
1 TAATTTTTTTA-AAACTTTAA
*
35869237 TACTTTTT
1 TAATTTTT
35869245 AAAATTTTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (20 bp):
TAATTTTTTTAAAACTTTAA
Found at i:35869434 original size:20 final size:19
Alignment explanation
Indices: 35869396--35869453 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 19
35869386 TACAAAAACC
*
35869396 ATATATAAAAA-TATTAAA
1 ATATATAAAAATTATAAAA
35869414 ATATCATAAAAATTATAAAA
1 ATAT-ATAAAAATTATAAAA
* *
35869434 AAATTATAAAACTTATAAAA
1 ATA-TATAAAAATTATAAAA
35869454 CTTTTTATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
18 4 0.12
19 7 0.21
20 22 0.65
21 1 0.03
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (19 bp):
ATATATAAAAATTATAAAA
Found at i:35872952 original size:16 final size:17
Alignment explanation
Indices: 35872931--35872969 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
35872921 AATAATCATT
* *
35872931 TTAAAAATAACT-ATAC
1 TTAAAAAAAACTAAAAC
35872947 TTAAAAAAAACTAAAAC
1 TTAAAAAAAACTAAAAC
35872964 TTAAAA
1 TTAAAA
35872970 GTATAAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.64, C:0.10, G:0.00, T:0.26
Consensus pattern (17 bp):
TTAAAAAAAACTAAAAC
Found at i:35882939 original size:37 final size:37
Alignment explanation
Indices: 35882879--35882953 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
35882869 AGCTATTCGA
*
35882879 AGCAATTGGCATGTTATCAGGTGGATTGGCTCTTATG
1 AGCAATTGGCATGTTATCAGGTGGATTAGCTCTTATG
* *
35882916 AGCATTTGGCATGTTATCGGGTGGATTAGCTCTTATG
1 AGCAATTGGCATGTTATCAGGTGGATTAGCTCTTATG
35882953 A
1 A
35882954 TTGTCTGACG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.21, C:0.13, G:0.29, T:0.36
Consensus pattern (37 bp):
AGCAATTGGCATGTTATCAGGTGGATTAGCTCTTATG
Found at i:35891847 original size:43 final size:43
Alignment explanation
Indices: 35891682--35891847 Score: 149
Period size: 43 Copynumber: 3.9 Consensus size: 43
35891672 ATAAGCTCGT
* * * * * *
35891682 ACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCACACA
1 ACAATGCCAATATCCCAAACATGGTCTTACACGTAATCTCAAA
* * * * * *
35891724 TCGATGCCACTATCCCAGACAGGGTCTTACACG-AA-ATCAATTA
1 ACAATGCCAATATCCCAAACATGGTCTTACACGTAATCTCAA--A
* *
35891767 ACAATGCCAATGTCCCAAACATGGTCTTACACATAATCTCAAA
1 ACAATGCCAATATCCCAAACATGGTCTTACACGTAATCTCAAA
* *
35891810 ACAATGCCAATGTCCCAAACATGGTCTTACATGTAATC
1 ACAATGCCAATATCCCAAACATGGTCTTACACGTAATC
35891848 ACATCACGAT
Statistics
Matches: 99, Mismatches: 20, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
41 2 0.02
42 7 0.07
43 84 0.85
44 2 0.02
45 4 0.04
ACGTcount: A:0.35, C:0.27, G:0.13, T:0.25
Consensus pattern (43 bp):
ACAATGCCAATATCCCAAACATGGTCTTACACGTAATCTCAAA
Found at i:35893674 original size:21 final size:22
Alignment explanation
Indices: 35893627--35893674 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
35893617 CTAAAAAAAG
**
35893627 TACTTACCTTGAATAATTTTCA
1 TACTTACCTTGAATAATTTAAA
*
35893649 TACTTACCTTG-ATACTTTAAA
1 TACTTACCTTGAATAATTTAAA
35893670 TACTT
1 TACTT
35893675 GTATTACTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.31, C:0.19, G:0.04, T:0.46
Consensus pattern (22 bp):
TACTTACCTTGAATAATTTAAA
Found at i:35893813 original size:22 final size:22
Alignment explanation
Indices: 35893788--35893837 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
35893778 GAGCACCAAG
35893788 GTGCTATA-CAGAGAACACAAAC
1 GTGCTA-ACCAGAGAACACAAAC
*
35893810 GTGCTAACCAGAGAGCACAAAC
1 GTGCTAACCAGAGAACACAAAC
*
35893832 ATGCTA
1 GTGCTA
35893838 GAAAATAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 1 0.04
22 24 0.96
ACGTcount: A:0.42, C:0.24, G:0.20, T:0.14
Consensus pattern (22 bp):
GTGCTAACCAGAGAACACAAAC
Found at i:35897319 original size:24 final size:24
Alignment explanation
Indices: 35897240--35897325 Score: 100
Period size: 24 Copynumber: 3.6 Consensus size: 24
35897230 TTTACTAAAA
* *
35897240 TATTGAATGACTTGGCCACAACGT
1 TATTGAGTGGCTTGGCCACAACGT
** * *
35897264 TATTGAGCAGCTTGGCCACAATGC
1 TATTGAGTGGCTTGGCCACAACGT
* *
35897288 TATTGAGTGGCTTGTCTACAACGT
1 TATTGAGTGGCTTGGCCACAACGT
35897312 TATTGAGTGGCTTG
1 TATTGAGTGGCTTG
35897326 ACCATAATGA
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.33
Consensus pattern (24 bp):
TATTGAGTGGCTTGGCCACAACGT
Found at i:35897391 original size:65 final size:64
Alignment explanation
Indices: 35897288--35897434 Score: 213
Period size: 65 Copynumber: 2.3 Consensus size: 64
35897278 GCCACAATGC
* * * * *
35897288 TATTGAGTGGCTTGTCTACAACGTTATTGAGTGGCTTGACCATAATGATGCAACTTGACTGCGA
1 TATTGAGTGGCTTGGCCACAACGTTATTGAGTGACTTGACCACAACGATGCAACTTGACTGCGA
* *
35897352 TATTGAGTGGCTTGGCCACAAACGTTATTGAGTGACTTGACCACAACGATGTAGCTTGACTGCGA
1 TATTGAGTGGCTTGGCCAC-AACGTTATTGAGTGACTTGACCACAACGATGCAACTTGACTGCGA
*
35897417 TATTAAGTGGCTTGGCCA
1 TATTGAGTGGCTTGGCCA
35897435 TAATGTGATG
Statistics
Matches: 74, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
64 17 0.23
65 57 0.77
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (64 bp):
TATTGAGTGGCTTGGCCACAACGTTATTGAGTGACTTGACCACAACGATGCAACTTGACTGCGA
Found at i:35913836 original size:32 final size:32
Alignment explanation
Indices: 35913800--35913863 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
35913790 CCTGGACTAA
*
35913800 AACGTGAGGTGACTGGATTTGTAGCTAAGTGT
1 AACGTGAGGTGACTAGATTTGTAGCTAAGTGT
35913832 AACGTGAGGTGACTAGATTTGTAGCTAAGTGT
1 AACGTGAGGTGACTAGATTTGTAGCTAAGTGT
35913864 CTAACGTGTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.27, C:0.09, G:0.33, T:0.31
Consensus pattern (32 bp):
AACGTGAGGTGACTAGATTTGTAGCTAAGTGT
Found at i:35920277 original size:30 final size:30
Alignment explanation
Indices: 35920241--35920299 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
35920231 AATGAATTAA
35920241 ATAGATATAGAGAGGTGATGGGTTAACTTT
1 ATAGATATAGAGAGGTGATGGGTTAACTTT
35920271 ATAGATATAGAGAGGTGATGGGTTAACTT
1 ATAGATATAGAGAGGTGATGGGTTAACTT
35920300 AAGAAAAGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.34, C:0.03, G:0.31, T:0.32
Consensus pattern (30 bp):
ATAGATATAGAGAGGTGATGGGTTAACTTT
Found at i:35921382 original size:13 final size:13
Alignment explanation
Indices: 35921357--35921398 Score: 57
Period size: 13 Copynumber: 3.0 Consensus size: 13
35921347 TACTTAAGTG
35921357 TATAATATAATAATA
1 TATAATATAAT-A-A
35921372 TATTAATATAATAA
1 TA-TAATATAATAA
35921386 TATAATATAATAA
1 TATAATATAATAA
35921399 AATTTAAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 11 0.42
14 3 0.12
15 3 0.12
16 9 0.35
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TATAATATAATAA
Found at i:35921398 original size:8 final size:8
Alignment explanation
Indices: 35921358--35921392 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
35921348 ACTTAAGTGT
35921358 ATAATATA
1 ATAATATA
35921366 ATAATATA
1 ATAATATA
*
35921374 TTAATATA
1 ATAATATA
35921382 ATAATATA
1 ATAATATA
35921390 ATA
1 ATA
35921393 TAATAAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
ATAATATA
Found at i:35921431 original size:8 final size:9
Alignment explanation
Indices: 35921403--35921445 Score: 63
Period size: 9 Copynumber: 5.0 Consensus size: 9
35921393 TAATAAAATT
35921403 TAAAAGAAA
1 TAAAAGAAA
35921412 TAAAAGAAA
1 TAAAAGAAA
35921421 TAAAA-AAA
1 TAAAAGAAA
35921429 T-AAAGAAA
1 TAAAAGAAA
*
35921437 CAAAAGAAA
1 TAAAAGAAA
35921446 GAGAATAGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
7 3 0.10
8 7 0.23
9 21 0.68
ACGTcount: A:0.79, C:0.02, G:0.09, T:0.09
Consensus pattern (9 bp):
TAAAAGAAA
Found at i:35923964 original size:31 final size:31
Alignment explanation
Indices: 35923893--35923971 Score: 106
Period size: 31 Copynumber: 2.5 Consensus size: 31
35923883 CATGTTTACA
* *
35923893 CTTTCATTTGGGTCACCCAACTTCTAGATCT
1 CTTTCATTTTGGTCACCCAACTTCTAGATCG
*
35923924 CTTTCATTTTGGTCATCCAACTTCTA-AGTCG
1 CTTTCATTTTGGTCACCCAACTTCTAGA-TCG
*
35923955 CTTTCATTTTAGTCACC
1 CTTTCATTTTGGTCACC
35923972 TAAAAACTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
30 1 0.02
31 41 0.98
ACGTcount: A:0.19, C:0.28, G:0.11, T:0.42
Consensus pattern (31 bp):
CTTTCATTTTGGTCACCCAACTTCTAGATCG
Found at i:35928061 original size:21 final size:21
Alignment explanation
Indices: 35928001--35928090 Score: 74
Period size: 21 Copynumber: 4.3 Consensus size: 21
35927991 CTGAACATTA
*
35928001 AACCCTAGACTTTGGACCTTG
1 AACCCTAAACTTTGGACCTTG
* * * *
35928022 GACCTTAAAAC-CTAGACCTTG
1 AACCCT-AAACTTTGGACCTTG
* * *
35928043 GACCCTAAACGTTGTACCTTG
1 AACCCTAAACTTTGGACCTTG
* *
35928064 AAACCTAGACTTTGGACCTTG
1 AACCCTAAACTTTGGACCTTG
35928085 AACCCT
1 AACCCT
35928091 GAATCTTAGA
Statistics
Matches: 52, Mismatches: 15, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
20 4 0.08
21 45 0.87
22 3 0.06
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.27
Consensus pattern (21 bp):
AACCCTAAACTTTGGACCTTG
Found at i:35928162 original size:21 final size:22
Alignment explanation
Indices: 35928138--35928188 Score: 79
Period size: 21 Copynumber: 2.4 Consensus size: 22
35928128 GTTAAGGGTC
*
35928138 TAGGGTTTA-GTGTCTAAGATT
1 TAGGGTTTAGGAGTCTAAGATT
35928159 TAGGG-TTAGGAGTCTAAGATT
1 TAGGGTTTAGGAGTCTAAGATT
35928180 TAGGGTTTA
1 TAGGGTTTA
35928189 TAATCAAGGG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 3 0.11
21 21 0.78
22 3 0.11
ACGTcount: A:0.25, C:0.04, G:0.31, T:0.39
Consensus pattern (22 bp):
TAGGGTTTAGGAGTCTAAGATT
Found at i:35934844 original size:18 final size:18
Alignment explanation
Indices: 35934821--35934855 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
35934811 TTATCAGAAA
35934821 AGAAAACTGAACAGATGG
1 AGAAAACTGAACAGATGG
* *
35934839 AGAAAATTGAACTGATG
1 AGAAAACTGAACAGATG
35934856 AATATTATTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.09, G:0.26, T:0.17
Consensus pattern (18 bp):
AGAAAACTGAACAGATGG
Found at i:35935014 original size:15 final size:16
Alignment explanation
Indices: 35934963--35935007 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
35934953 AACAGAACTC
*
35934963 CTAAAAATAGCAAACG
1 CTAAAAATAGCAAACA
* *
35934979 TTAAAAATAACAAACA
1 CTAAAAATAGCAAACA
35934995 CTAAAAATAGCAA
1 CTAAAAATAGCAA
35935008 TCCTAAACAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.62, C:0.16, G:0.07, T:0.16
Consensus pattern (16 bp):
CTAAAAATAGCAAACA
Found at i:35939186 original size:16 final size:16
Alignment explanation
Indices: 35939144--35939188 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
35939134 AATAAAACTC
*
35939144 CTAAAAATAGAAAACA
1 CTAAAAATAGCAAACA
*
35939160 TTAAAAATAGCAAACA
1 CTAAAAATAGCAAACA
*
35939176 CTAGAAATAGCAA
1 CTAAAAATAGCAA
35939189 TCCTAAACAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.62, C:0.13, G:0.09, T:0.16
Consensus pattern (16 bp):
CTAAAAATAGCAAACA
Found at i:35939345 original size:17 final size:18
Alignment explanation
Indices: 35939320--35939369 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 18
35939310 ACTCAAACCT
*
35939320 AAAAGTGATTTGAACTC-
1 AAAATTGATTTGAACTCG
*
35939337 AAAATTGATATGAA-TCG
1 AAAATTGATTTGAACTCG
*
35939354 AAAATTGATTCGAACT
1 AAAATTGATTTGAACT
35939370 AAGAATGACA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
16 2 0.07
17 24 0.89
18 1 0.04
ACGTcount: A:0.44, C:0.10, G:0.16, T:0.30
Consensus pattern (18 bp):
AAAATTGATTTGAACTCG
Found at i:35939711 original size:15 final size:16
Alignment explanation
Indices: 35939691--35939723 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
35939681 ATATATTATT
35939691 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
35939706 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
35939723 T
1 T
35939724 ATAACCGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:35940602 original size:27 final size:27
Alignment explanation
Indices: 35940571--35940626 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
35940561 TTTAATCGAA
35940571 CAACTTTTTTGAAAACACAACGATTTT
1 CAACTTTTTTGAAAACACAACGATTTT
35940598 CAACTTTTTTGAAAACACAACGATTTT
1 CAACTTTTTTGAAAACACAACGATTTT
35940625 CA
1 CA
35940627 CAATTTAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.38, C:0.20, G:0.07, T:0.36
Consensus pattern (27 bp):
CAACTTTTTTGAAAACACAACGATTTT
Found at i:35940884 original size:20 final size:21
Alignment explanation
Indices: 35940842--35940884 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 21
35940832 ACGAACTAAC
** *
35940842 CAAAAATTAAAAAGTCCATAA
1 CAAAAATTAAAAAACCCAAAA
35940863 CAAAAA-TAAAAAACCCAAAA
1 CAAAAATTAAAAAACCCAAAA
35940883 CA
1 CA
35940885 GTCCAAAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.67, C:0.19, G:0.02, T:0.12
Consensus pattern (21 bp):
CAAAAATTAAAAAACCCAAAA
Found at i:35941943 original size:18 final size:18
Alignment explanation
Indices: 35941920--35941957 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
35941910 TAGCCCCCTG
35941920 TTTGATGATTTATCATTT
1 TTTGATGATTTATCATTT
35941938 TTTGATGATTTATCATTT
1 TTTGATGATTTATCATTT
35941956 TT
1 TT
35941958 CTATTGAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.21, C:0.05, G:0.11, T:0.63
Consensus pattern (18 bp):
TTTGATGATTTATCATTT
Found at i:35943587 original size:16 final size:18
Alignment explanation
Indices: 35943561--35943594 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
35943551 TTAAATTAAC
35943561 TAAATTAA-TTTCTCAAT
1 TAAATTAATTTTCTCAAT
35943578 TAAA-TAATTTTCTCAAT
1 TAAATTAATTTTCTCAAT
35943595 ACAATTCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.41, C:0.12, G:0.00, T:0.47
Consensus pattern (18 bp):
TAAATTAATTTTCTCAAT
Found at i:35966236 original size:3 final size:3
Alignment explanation
Indices: 35966230--35966275 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
35966220 GTTTACTTTC
35966230 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
35966276 GTCTTTTATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:35967888 original size:58 final size:58
Alignment explanation
Indices: 35967798--35967914 Score: 225
Period size: 58 Copynumber: 2.0 Consensus size: 58
35967788 CACCTCGCGA
35967798 TGCATCTGATGGTGAAGACCTTTGAGTCCACTTATGTTATTTTTATTTTTATTTTTAT
1 TGCATCTGATGGTGAAGACCTTTGAGTCCACTTATGTTATTTTTATTTTTATTTTTAT
*
35967856 TGCATCTGATGGTGAAGTCCTTTGAGTCCACTTATGTTATTTTTATTTTTATTTTTAT
1 TGCATCTGATGGTGAAGACCTTTGAGTCCACTTATGTTATTTTTATTTTTATTTTTAT
35967914 T
1 T
35967915 TTTATTTTTA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.20, C:0.12, G:0.15, T:0.53
Consensus pattern (58 bp):
TGCATCTGATGGTGAAGACCTTTGAGTCCACTTATGTTATTTTTATTTTTATTTTTAT
Found at i:35967903 original size:6 final size:6
Alignment explanation
Indices: 35967892--35967938 Score: 85
Period size: 6 Copynumber: 7.8 Consensus size: 6
35967882 TCCACTTATG
*
35967892 TTATTT TTATTT TTATTT TTATTT TTATTT TTATCT TTATTT TTATT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATT
35967939 ATGTTGCTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (6 bp):
TTATTT
Found at i:35968427 original size:16 final size:16
Alignment explanation
Indices: 35968406--35968441 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
35968396 GATAAGTTGG
35968406 CTTTTAAAGCATATAT
1 CTTTTAAAGCATATAT
35968422 CTTTTAAAGCATATAT
1 CTTTTAAAGCATATAT
35968438 CTTT
1 CTTT
35968442 CTTGCTCACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.33, C:0.14, G:0.06, T:0.47
Consensus pattern (16 bp):
CTTTTAAAGCATATAT
Found at i:35968783 original size:15 final size:15
Alignment explanation
Indices: 35968760--35968789 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
35968750 TTAAGAATTT
35968760 CTCCATTTTTATTGA
1 CTCCATTTTTATTGA
*
35968775 CTCCCTTTTTATTGA
1 CTCCATTTTTATTGA
35968790 GATTTGATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.23, G:0.07, T:0.53
Consensus pattern (15 bp):
CTCCATTTTTATTGA
Found at i:35975359 original size:29 final size:29
Alignment explanation
Indices: 35975301--35975359 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
35975291 CATTTGGAAG
**
35975301 TTAATCACTCTACTTTTATTTTTAAGAAA
1 TTAATCACTCTACTTTTAAATTTAAGAAA
*
35975330 TTAATCAGTCTACTTTTGAAATTTAA-AAA
1 TTAATCACTCTACTTTT-AAATTTAAGAAA
35975359 T
1 T
35975360 CTAGGTCACG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 20 0.77
30 6 0.23
ACGTcount: A:0.37, C:0.12, G:0.05, T:0.46
Consensus pattern (29 bp):
TTAATCACTCTACTTTTAAATTTAAGAAA
Found at i:35986458 original size:19 final size:19
Alignment explanation
Indices: 35986434--35986478 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
35986424 CGTCTCTTTT
*
35986434 TGCATT-CATTTCATGCATC
1 TGCATTGCATTTCAT-CATA
35986453 TGCATTGCATTTCATCATA
1 TGCATTGCATTTCATCATA
35986472 TGCATTG
1 TGCATTG
35986479 AATATCACAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.42
Consensus pattern (19 bp):
TGCATTGCATTTCATCATA
Found at i:35990303 original size:53 final size:53
Alignment explanation
Indices: 35990223--35990379 Score: 233
Period size: 53 Copynumber: 3.0 Consensus size: 53
35990213 GCTCCCAATC
* *
35990223 AATTTTATTCTTATTACATTTGCTATCTTTGCTTAACTTATTCATTTCGAGTT
1 AATTTTCTTCTTATTACATTTGCTATCTTTGATTAACTTATTCATTTCGAGTT
*
35990276 AATTTTCTTCTTATTACATTTGCTATCTTTGATTAACTTATTCATTTTGAGTT
1 AATTTTCTTCTTATTACATTTGCTATCTTTGATTAACTTATTCATTTCGAGTT
* ** ** *
35990329 AATTTCCTTCTTATTGTATTTGCTATCTTTGATTATTTTATTTATTTCGAG
1 AATTTTCTTCTTATTACATTTGCTATCTTTGATTAACTTATTCATTTCGAG
35990380 CTATGCTCCC
Statistics
Matches: 94, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 94 1.00
ACGTcount: A:0.22, C:0.13, G:0.08, T:0.57
Consensus pattern (53 bp):
AATTTTCTTCTTATTACATTTGCTATCTTTGATTAACTTATTCATTTCGAGTT
Found at i:35990315 original size:27 final size:26
Alignment explanation
Indices: 35990232--35990322 Score: 82
Period size: 27 Copynumber: 3.4 Consensus size: 26
35990222 CAATTTTATT
35990232 CTTATTACATTTGCTATCTTTGCTTAA
1 CTTATT-CATTTGCTATCTTTGCTTAA
*
35990259 CTTATTCATTTCGAGTTAAT-TTT-CTT--
1 CTTATTCATTT---GCT-ATCTTTGCTTAA
*
35990285 CTTATTACATTTGCTATCTTTGATTAA
1 CTTATT-CATTTGCTATCTTTGCTTAA
35990312 CTTATTCATTT
1 CTTATTCATTT
35990323 TGAGTTAATT
Statistics
Matches: 52, Mismatches: 3, Indels: 19
0.70 0.04 0.26
Matches are distributed among these distances:
23 2 0.04
24 5 0.10
25 2 0.04
26 16 0.31
27 17 0.33
28 3 0.06
29 5 0.10
30 2 0.04
ACGTcount: A:0.22, C:0.16, G:0.07, T:0.55
Consensus pattern (26 bp):
CTTATTCATTTGCTATCTTTGCTTAA
Found at i:35990910 original size:46 final size:46
Alignment explanation
Indices: 35990816--35990988 Score: 233
Period size: 46 Copynumber: 3.8 Consensus size: 46
35990806 TGAAGAAGCC
* * * *
35990816 ACAAATCCTATAACCCTGAGCTGCA-TGGGATGGATTGAAA-AAGAT
1 ACAAATCCTATACCCCTGAGTTGTAGTGGGATGGATT-AAAGATGAT
*
35990861 ACAAATCCTATACCCCTGAGTTGTAGTGGGATGGATTAAAGATGGT
1 ACAAATCCTATACCCCTGAGTTGTAGTGGGATGGATTAAAGATGAT
* *
35990907 ACAAATCCTATACCTCTGAGTTATAGTGGGATGGATTAAAGATGAT
1 ACAAATCCTATACCCCTGAGTTGTAGTGGGATGGATTAAAGATGAT
* * *
35990953 ACAAATCCTATACCCTTGAGTTGTAGTAGGAAGGAT
1 ACAAATCCTATACCCCTGAGTTGTAGTGGGATGGAT
35990989 AAAAATACAC
Statistics
Matches: 113, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
45 25 0.22
46 88 0.78
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (46 bp):
ACAAATCCTATACCCCTGAGTTGTAGTGGGATGGATTAAAGATGAT
Found at i:35991299 original size:46 final size:46
Alignment explanation
Indices: 35991218--35991337 Score: 127
Period size: 46 Copynumber: 2.6 Consensus size: 46
35991208 AGATCAAAGC
* *
35991218 CACAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAATA
1 CACAATCCTTATCTCCCTGAAGTTACAGTAGAGCAGGATAAAAATA
* * * * *
35991264 CACAAACCTTATCTCCCTGAAGTTATAGT-GAAGCAGGTTGAAATTA
1 CACAATCCTTATCTCCCTGAAGTTACAGTAG-AGCAGGATAAAAATA
* * *
35991310 C-CAATTCTTATCTCCTTGAAGTTCCAGT
1 CACAATCCTTATCTCCCTGAAGTTACAGT
35991338 GGAGTAGATT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
45 23 0.38
46 38 0.62
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.30
Consensus pattern (46 bp):
CACAATCCTTATCTCCCTGAAGTTACAGTAGAGCAGGATAAAAATA
Found at i:35991330 original size:45 final size:45
Alignment explanation
Indices: 35991003--35991609 Score: 211
Period size: 44 Copynumber: 13.6 Consensus size: 45
35990993 ATACACAAAC
* * *
35991003 CTTATCTCCCTTAAGTTGCAGTGGAGCAGGTTGAAATTACTAATT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAATTACCAATT
* * * * * * ** *
35991048 CTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTA-CAAAT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAATTACCAATT
* * * **
35991092 CTCT-TCTCCCTGAAATTACATTGGAG-TGGATT-AAAGCCACCAATT
1 CT-TATCTCCCTGAAGTTACAGTGGAGCAGG-TTGAAA-TTACCAATT
* * * * * * ** *
35991137 CTTATCTCCTTTAAGTT-CTAGCGGAGTAGATCGAAGCTA-CAAAT
1 CTTATCTCCCTGAAGTTAC-AGTGGAGCAGGTTGAAATTACCAATT
* * * * * ** *
35991181 C-TATTCTCCCTAAAATTACATTGGAGCA-GATCAAA-GCCACAATC
1 CTTA-TCTCCCTGAAGTTACAGTGGAGCAGGTTGAAATTAC-CAATT
* * * * * * **
35991225 CTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAATACACAAAC
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAATTAC-CAATT
* *
35991271 CTTATCTCCCTGAAGTTATAGTGAAGCAGGTTGAAATTACCAATT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAATTACCAATT
* * * * ** *
35991316 CTTATCTCCTTGAAGTTCCAGTGGAGTAGATTGAAGCTA-CAAAT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAATTACCAATT
* *
35991360 CTCT-TCTCCCTGAAATTACATTGGAGC-GGATTGAAATTACCAATT
1 CT-TATCTCCCTGAAGTTACAGTGGAGCAGG-TTGAAATTACCAATT
** * * ** * * * ** *
35991405 CTTATCTCTTTAAAGTTCCAACGGAGTAGATCGAAGCTA-CAAAT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAATTACCAATT
* * * * *** * *
35991449 CTCT-TCTCCTTGAAATTACATTGGAGCAGATTGAAGCCA-TAATC
1 CT-TATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAATTACCAATT
* * * * * * * *
35991493 CTTATCTCTCTGAAGTTGCAGTAGAGTAGGATAAAAATACACGAA-C
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAATTAC-C-AATT
*
35991539 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAATT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAATTACCAATT
* * * *
35991584 ATTATCTCCTTGAAGTTCCAGCGGAG
1 CTTATCTCCCTGAAGTTACAGTGGAG
35991610 TAGATCGAAG
Statistics
Matches: 400, Mismatches: 136, Indels: 52
0.68 0.23 0.09
Matches are distributed among these distances:
43 9 0.02
44 162 0.41
45 150 0.38
46 77 0.19
47 2 0.00
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAATTACCAATT
Found at i:35991383 original size:268 final size:268
Alignment explanation
Indices: 35990971--35992189 Score: 1234
Period size: 268 Copynumber: 4.5 Consensus size: 268
35990961 TATACCCTTG
* * *
35990971 AGTTGTAGTAG-GAAGGATAAAAATACACAAACCTTATCTCCCTTAAGTTGCAGTGGAGCAGGTT
1 AGTTGCAGTAGAGCAGGATAAAAATACACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT
*
35991035 GAAATTACTAATTCTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTC
66 GAAATTACCAATTCTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTC
*
35991100 CCTGAAATTACATTGGAGTGGATT-AAAGCCACCAATTCTTATCTCCTTTAAGTTCTAGCGGAGT
131 CCTGAAATTACATTGGAGTGGATTGAAA-CCACCAATTCTTATCTCCTTAAAGTTCTAGCGGAGT
* *
35991164 AGATCGAAGCTACAAATCTATTCTCCCTAAAATTACATTGGAGCAGATCAAAGCCACAATCCTTA
195 AGATCGAAGCTACAAATCTCTTCTCCCTGAAATTACATTGGAGCAGATCAAAGCCACAATCCTTA
35991229 TCTCTCTGA
260 TCTCTCTGA
** *
35991238 AGTTGCAGTAGAGCAGGATAAAAATACACAAACCTTATCTCCCTGAAGTTATAGTGAAGCAGGTT
1 AGTTGCAGTAGAGCAGGATAAAAATACACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT
* *
35991303 GAAATTACCAATTCTTATCTCCTTGAAGTTCCAGTGGAGTAGATTGAAGCTACAAATCTCTTCTC
66 GAAATTACCAATTCTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTC
* ** * * *
35991368 CCTGAAATTACATTGGAGCGGATTGAAATTACCAATTCTTATCTCTTTAAAGTTCCAACGGAGTA
131 CCTGAAATTACATTGGAGTGGATTGAAACCACCAATTCTTATCTCCTTAAAGTTCTAGCGGAGTA
* ** *
35991433 GATCGAAGCTACAAATCTCTTCTCCTTGAAATTACATTGGAGCAGATTGAAGCCATAATCCTTAT
196 GATCGAAGCTACAAATCTCTTCTCCCTGAAATTACATTGGAGCAGATCAAAGCCACAATCCTTAT
35991498 CTCTCTGA
261 CTCTCTGA
* *
35991506 AGTTGCAGTAGAGTAGGATAAAAATACACGAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT
1 AGTTGCAGTAGAGCAGGATAAAAATACACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT
* *
35991571 GAAATTACCAATTATTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTGCAAATCTCTTCTC
66 GAAATTACCAATTCTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTC
** * * * * * * ** ** *
35991636 TTTGAAATTATATTGGAGTAGATCGAAGCCA-CAATCCTTATC-GCTCTAAAGTTGAAGTAGAGC
131 CCTGAAATTACATTGGAGTGGATTGAAACCACCAATTCTTATCTCCT-TAAAGTTCTAGCGGAGT
* ** * * * * * **
35991699 AGGAT-AAAAATAAACAAACCT-TATCTCCCTG-AAGTAGCAGTGGAGCAGGTTGAAA-TTACCA
195 A-GATCGAAGCT--ACAAATCTCT-TCTCCCTGAAATTA-CATTGGAGCA-GATCAAAGCCA-CA
* *
35991760 ATTCTTATCTCAT-TAA
253 ATCCTTATCTC-TCTGA
** ** * ** * * * * * ** * * *
35991776 AGTTTTAGCGGAGTA-GAT-CGAA-GCTGCAAATCTCT-TCTCTCTGAAATTATATTGGAGTAGA
1 AGTTGCAGTAGAGCAGGATAAAAATAC-ACAAACCT-TATCTCCCTGAAGTTGCAGTGGAGCAGG
* *** * * * ** ** * * ** *
35991837 TCGAAGCCA-CAATCCTTATC-GCTCTAAAGTTGAAGTAGAGCAGGAT-AAAAATAAACAAACCT
64 TTGAAATTACCAATTCTTATCTCCT-TGAAGTTCCAGCGGAGTA-GATCGAAGCT--ACAAATCT
* * ** ** *
35991899 -TATCTCCCT-AAAGTAGCAGTGGAACAGG-TTGAAATTACCAATTCTTATCTCCTTAAAGTTTT
125 CT-TCTCCCTGAAATTA-CATTGG-AGTGGATTGAAACCACCAATTCTTATCTCCTTAAAGTTCT
* * *
35991961 AGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATTACATTAGAGTAGATCGAAGCCAC
187 AGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATTACATTGGAGCAGATCAAAGCCAC
35992026 AATCCTTATCTCTCTGA
252 AATCCTTATCTCTCTGA
* * * *
35992043 AGTTGCAGTAGAGCAGGATAAAAGTACACAAACCTTATCTCCTTGAAGTTGCAGTAGAGTAGGTT
1 AGTTGCAGTAGAGCAGGATAAAAATACACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT
* *
35992108 GAAATTACCAATTTTTATCTCCTTGAAGTTCCAACGGAGTAGATCGAAGCTACAAATCTCTTCTC
66 GAAATTACCAATTCTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTC
35992173 CCTGAAATTACATTGGA
131 CCTGAAATTACATTGGA
35992190 ACAGATTGAA
Statistics
Matches: 744, Mismatches: 172, Indels: 72
0.75 0.17 0.07
Matches are distributed among these distances:
266 4 0.01
267 89 0.12
268 468 0.63
269 98 0.13
270 80 0.11
271 5 0.01
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (268 bp):
AGTTGCAGTAGAGCAGGATAAAAATACACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT
GAAATTACCAATTCTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTC
CCTGAAATTACATTGGAGTGGATTGAAACCACCAATTCTTATCTCCTTAAAGTTCTAGCGGAGTA
GATCGAAGCTACAAATCTCTTCTCCCTGAAATTACATTGGAGCAGATCAAAGCCACAATCCTTAT
CTCTCTGA
Found at i:35991666 original size:179 final size:179
Alignment explanation
Indices: 35990971--35992189 Score: 1239
Period size: 179 Copynumber: 6.8 Consensus size: 179
35990961 TATACCCTTG
* * * *
35990971 AGTTGTAGTAG-GAAGGATAAAAATACACAAACCTTATCTCCCTTAAGTTGCAGTGGAGCAGGTT
1 AGTTGAAGTAGAGCAGGATAAAAATAAACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT
* *
35991035 GAAATTACTAATTCTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTC
66 GAAATTACCAATTCTTATCTCCTTAAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTC
* ** * * *
35991100 CCTGAAATTACATTGGAGTGGATTAAAGCCACCAATTCTTATCTC-CTTTA
131 CCTGAAATTACATTGGAGTAGATCGAAGCCA-CAATCCTTATCGCTC-TAA
** ** * * ** * * * * *
35991150 AGTTCTAGCGGAGTA-GATCGAAGCT--ACAAATC-TATTCTCCCTAAAATTACATTGGAGCA-G
1 AGTTGAAGTAGAGCAGGAT-AAAAATAAACAAACCTTA-TCTCCCTGAAGTTGCAGTGGAGCAGG
* * ** * * * ** * * ** *
35991210 ATCAAA-GCCACAATCCTTATCT-CTCTGAAGTTGCAGTAGAGCAGGAT-AAAAATACACAAAC-
64 TTGAAATTAC-CAATTCTTATCTCCT-TAAAGTTCCAGCGGAGTA-GATCGAAGCTACA-AATCT
* * * * * * * *** * * *
35991271 CTTATCTCCCTGAAGTTATAGTGAAGCAGGTTGAAATTACCAATTCTTATCTC-CTTGA
125 C-T-TCTCCCTGAAATTACATTGGAGTAGATCGAAGCCA-CAATCCTTATCGCTC-TAA
** * * * ** * * * *
35991329 AGTTCCAGTGGAGTA-GATTGAAGCT--ACAAATCTCT-TCTCCCTGAAATTACATTGGAGC-GG
1 AGTTGAAGTAGAGCAGGA-TAAAAATAAACAAACCT-TATCTCCCTGAAGTTGCAGTGGAGCAGG
* *
35991389 ATTGAAATTACCAATTCTTATCTCTTTAAAGTTCCAACGGAGTAGATCGAAGCTACAAATCTCTT
64 -TTGAAATTACCAATTCTTATCTCCTTAAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTT
* * * * * *
35991454 CTCCTTGAAATTACATTGGAGCAGATTGAAGCCATAATCCTTATCTCTCTGA
128 CTCCCTGAAATTACATTGGAGTAGATCGAAGCCACAATCCTTATCGCTCTAA
* * * *
35991506 AGTTGCAGTAGAGTAGGATAAAAATACACGAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT
1 AGTTGAAGTAGAGCAGGATAAAAATAAACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT
* * *
35991571 GAAATTACCAATTATTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTGCAAATCTCTTCTC
66 GAAATTACCAATTCTTATCTCCTTAAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTC
** *
35991636 TTTGAAATTATATTGGAGTAGATCGAAGCCACAATCCTTATCGCTCTAA
131 CCTGAAATTACATTGGAGTAGATCGAAGCCACAATCCTTATCGCTCTAA
*
35991685 AGTTGAAGTAGAGCAGGATAAAAATAAACAAACCTTATCTCCCTGAAGTAGCAGTGGAGCAGGTT
1 AGTTGAAGTAGAGCAGGATAAAAATAAACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT
* ** *
35991750 GAAATTACCAATTCTTATCTCATTAAAGTTTTAGCGGAGTAGATCGAAGCTGCAAATCTCTTCTC
66 GAAATTACCAATTCTTATCTCCTTAAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTC
* *
35991815 TCTGAAATTATATTGGAGTAGATCGAAGCCACAATCCTTATCGCTCTAA
131 CCTGAAATTACATTGGAGTAGATCGAAGCCACAATCCTTATCGCTCTAA
* * *
35991864 AGTTGAAGTAGAGCAGGATAAAAATAAACAAACCTTATCTCCCTAAAGTAGCAGTGGAACAGGTT
1 AGTTGAAGTAGAGCAGGATAAAAATAAACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT
**
35991929 GAAATTACCAATTCTTATCTCCTTAAAGTTTTAGCGGAGTAGATCGAAGCTACAAATCTCTTCTC
66 GAAATTACCAATTCTTATCTCCTTAAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTC
* * *
35991994 CCTGAAATTACATTAGAGTAGATCGAAGCCACAATCCTTATCTCTCTGA
131 CCTGAAATTACATTGGAGTAGATCGAAGCCACAATCCTTATCGCTCTAA
* * * * * *
35992043 AGTTGCAGTAGAGCAGGATAAAAGTACACAAACCTTATCTCCTTGAAGTTGCAGTAGAGTAGGTT
1 AGTTGAAGTAGAGCAGGATAAAAATAAACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT
* * *
35992108 GAAATTACCAATTTTTATCTCCTTGAAGTTCCAACGGAGTAGATCGAAGCTACAAATCTCTTCTC
66 GAAATTACCAATTCTTATCTCCTTAAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTC
35992173 CCTGAAATTACATTGGA
131 CCTGAAATTACATTGGA
35992190 ACAGATTGAA
Statistics
Matches: 891, Mismatches: 125, Indels: 48
0.84 0.12 0.05
Matches are distributed among these distances:
176 3 0.00
177 69 0.08
178 63 0.07
179 711 0.80
180 42 0.05
181 3 0.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (179 bp):
AGTTGAAGTAGAGCAGGATAAAAATAAACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT
GAAATTACCAATTCTTATCTCCTTAAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTC
CCTGAAATTACATTGGAGTAGATCGAAGCCACAATCCTTATCGCTCTAA
Found at i:35992015 original size:44 final size:45
Alignment explanation
Indices: 35991965--35992184 Score: 146
Period size: 44 Copynumber: 4.9 Consensus size: 45
35991955 AGTTTTAGCG
* *
35991965 GAGTAGATCGAAGCTACAAATCTCT-TCTCCCTGAAATTACATTA
1 GAGTAGATCGAAGCTACAAATCTCTATCTCCCTGAAGTTACAGTA
* * *
35992009 GAGTAGATCGAAGCCAC-AATC-CTTATCTCTCTGAAGTTGCAGTA
1 GAGTAGATCGAAGCTACAAATCTC-TATCTCCCTGAAGTTACAGTA
* ** * * *
35992053 GAGCAGGATAAAAG-TACACAAAC-CTTATCTCCTTGAAGTTGCAGTA
1 GAGTA-GATCGAAGCTACA-AATCTC-TATCTCCCTGAAGTTACAGTA
* * ** * * * * * ***
35992099 GAGTAGGTTGAAATTACCAATTTTTATCTCCTTGAAGTTCCAACG
1 GAGTAGATCGAAGCTACAAATCTCTATCTCCCTGAAGTTACAGTA
*
35992144 GAGTAGATCGAAGCTACAAATCTCT-TCTCCCTGAAATTACA
1 GAGTAGATCGAAGCTACAAATCTCTATCTCCCTGAAGTTACA
35992185 TTGGAACAGA
Statistics
Matches: 134, Mismatches: 35, Indels: 14
0.73 0.19 0.08
Matches are distributed among these distances:
42 1 0.01
43 5 0.04
44 50 0.37
45 47 0.35
46 31 0.23
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (45 bp):
GAGTAGATCGAAGCTACAAATCTCTATCTCCCTGAAGTTACAGTA
Found at i:35992137 original size:45 final size:46
Alignment explanation
Indices: 35992023--35992137 Score: 135
Period size: 46 Copynumber: 2.5 Consensus size: 46
35992013 AGATCGAAGC
*
35992023 CACAATCCTTATCT-CTCTGAAGTTGCAGTAGAGCAGGATAAAAGTA
1 CACAAACCTTATCTCCT-TGAAGTTGCAGTAGAGCAGGATAAAAGTA
* * * *
35992069 CACAAACCTTATCTCCTTGAAGTTGCAGTAGAGTAGGTTGAAATTA
1 CACAAACCTTATCTCCTTGAAGTTGCAGTAGAGCAGGATAAAAGTA
***
35992115 C-CAATTTTTATCTCCTTGAAGTT
1 CACAAACCTTATCTCCTTGAAGTT
35992138 CCAACGGAGT
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
45 19 0.32
46 39 0.65
47 2 0.03
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.32
Consensus pattern (46 bp):
CACAAACCTTATCTCCTTGAAGTTGCAGTAGAGCAGGATAAAAGTA
Found at i:35993889 original size:15 final size:15
Alignment explanation
Indices: 35993851--35993908 Score: 55
Period size: 14 Copynumber: 3.7 Consensus size: 15
35993841 TTATGTATTA
*
35993851 ATATCATTATTTTTT
1 ATATTATTATTTTTT
* *
35993866 TTACT-TTATTTTTT
1 ATATTATTATTTTTT
35993880 ATATTATTATTATTTT
1 ATATTATTATT-TTTT
35993896 CATCATTATTATT
1 -AT-ATTATTATT
35993909 ATGGTTTTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
14 12 0.35
15 7 0.21
16 4 0.12
17 2 0.06
18 9 0.26
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (15 bp):
ATATTATTATTTTTT
Found at i:35993894 original size:18 final size:19
Alignment explanation
Indices: 35993871--35993910 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
35993861 TTTTTTTACT
*
35993871 TTATTTTTTAT-ATTATTA
1 TTATTTTTCATCATTATTA
35993889 TTA-TTTTCATCATTATTA
1 TTATTTTTCATCATTATTA
35993907 TTAT
1 TTAT
35993911 GGTTTTAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.68
Consensus pattern (19 bp):
TTATTTTTCATCATTATTA
Found at i:35999906 original size:24 final size:24
Alignment explanation
Indices: 35999828--35999955 Score: 80
Period size: 24 Copynumber: 5.3 Consensus size: 24
35999818 AGACCCTTTT
*
35999828 GCACCCCCACCGCCAGGGCATCCG
1 GCACCACCACCGCCAGGGCATCCG
* * * *
35999852 GCACCACCTCCGCCA-GAC-CCCTTT
1 GCACCACCACCGCCAGGGCATCC--G
*
35999876 GCTCCACCACCGCCAGGGCATCCG
1 GCACCACCACCGCCAGGGCATCCG
* * * ** * ***
35999900 GCACCACCTCCACCTGACCCTTTT
1 GCACCACCACCGCCAGGGCATCCG
*
35999924 GCTCCACCACCGCCAGGGCATCCG
1 GCACCACCACCGCCAGGGCATCCG
35999948 GCACCACC
1 GCACCACC
35999956 TCCACCAGAC
Statistics
Matches: 69, Mismatches: 31, Indels: 8
0.64 0.29 0.07
Matches are distributed among these distances:
22 2 0.03
23 2 0.03
24 61 0.88
25 2 0.03
26 2 0.03
ACGTcount: A:0.17, C:0.52, G:0.19, T:0.12
Consensus pattern (24 bp):
GCACCACCACCGCCAGGGCATCCG
Found at i:35999991 original size:48 final size:48
Alignment explanation
Indices: 35999807--35999979 Score: 274
Period size: 48 Copynumber: 3.6 Consensus size: 48
35999797 CGGGCATCCT
* * *
35999807 CCACCTCCACCAGACCCTTTTGCACCCCCACCGCCAGGGCATCCGGCA
1 CCACCTCCACCAGACCCCTTTGCTCCACCACCGCCAGGGCATCCGGCA
*
35999855 CCACCTCCGCCAGACCCCTTTGCTCCACCACCGCCAGGGCATCCGGCA
1 CCACCTCCACCAGACCCCTTTGCTCCACCACCGCCAGGGCATCCGGCA
* *
35999903 CCACCTCCACCTGACCCTTTTGCTCCACCACCGCCAGGGCATCCGGCA
1 CCACCTCCACCAGACCCCTTTGCTCCACCACCGCCAGGGCATCCGGCA
* *
35999951 CCACCTCCACCAGACCCCTTCGCACCACC
1 CCACCTCCACCAGACCCCTTTGCTCCACC
35999980 TATGTTTGGG
Statistics
Matches: 114, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 114 1.00
ACGTcount: A:0.18, C:0.53, G:0.16, T:0.13
Consensus pattern (48 bp):
CCACCTCCACCAGACCCCTTTGCTCCACCACCGCCAGGGCATCCGGCA
Found at i:36004680 original size:130 final size:132
Alignment explanation
Indices: 36004535--36004822 Score: 350
Period size: 130 Copynumber: 2.2 Consensus size: 132
36004525 TCAAATGCCG
* * * * *
36004535 AATATTGCCTTCGTTTTAAATAATTTTTAGAAGATATGAATGAAAACTTGAAGGGATATTTGATT
1 AATATCGCCTTCGTTTTAAAGAATTTTTAAAAGACATGAATGAAAACTTGAAGGGATATTCGATT
*
36004600 ATTTTAAAC-AA-TCGAAATTGCAACCCAACACATTAGGGCACGATTCCACAAATTGCCAAATAT
66 ATTTTAAACAAACGCGAAATTGCAACCCAACACATTAGGGCACGATTCCACAAATTGCCAAATAT
36004663 CA
131 CA
** * * * ** *
36004665 CGTATCGCCTTCG-TTTAAGGGA-TTTTAAAAGACATGAGTGAAATTTTGAAGTGATATTCGATT
1 AATATCGCCTTCGTTTTAAAGAATTTTTAAAAGACATGAATGAAAACTTGAAGGGATATTCGATT
* * * * * *
36004728 ATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGTCAAATAT
66 ATTTTAAACAAACGCGAAATTGCAACCCAACACATTAGGGCACGATTCCACAAATTGCCAAATAT
36004793 CA
131 CA
* *
36004795 AATCTCGTCTTCGTTTTAAAGAATTTTT
1 AATATCGCCTTCGTTTTAAAGAATTTTT
36004823 GAATGAATGA
Statistics
Matches: 128, Mismatches: 26, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
128 41 0.32
129 8 0.06
130 68 0.53
131 7 0.05
132 4 0.03
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (132 bp):
AATATCGCCTTCGTTTTAAAGAATTTTTAAAAGACATGAATGAAAACTTGAAGGGATATTCGATT
ATTTTAAACAAACGCGAAATTGCAACCCAACACATTAGGGCACGATTCCACAAATTGCCAAATAT
CA
Found at i:36006462 original size:18 final size:19
Alignment explanation
Indices: 36006428--36006468 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
36006418 AAATAAGTAA
36006428 ATAGATATATAGTTACATAT
1 ATAGATATATAG-TACATAT
36006448 ATAGATATATA-TACATAT
1 ATAGATATATAGTACATAT
36006466 ATA
1 ATA
36006469 CGAATGAGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 10 0.48
20 11 0.52
ACGTcount: A:0.49, C:0.05, G:0.07, T:0.39
Consensus pattern (19 bp):
ATAGATATATAGTACATAT
Found at i:36008134 original size:130 final size:132
Alignment explanation
Indices: 36007942--36008200 Score: 346
Period size: 132 Copynumber: 2.0 Consensus size: 132
36007932 CAATATGCTC
* * * * *
36007942 CACTGCAACTTTAGGGAGACAAGATCTACAATTTTCAGCTTACTCCACTACAACTTTAGGAGCTA
1 CACTGCAACTTCAAGGAAACAAGATCTAAAATTTTCAGCCTACTCCACTACAACTTTAGGAGCTA
* *
36008007 GG-ACCT-GCTTAAATCTGCTTCACTGCATCTTCAGGAAGCCAAGATTCACCGTCTTCGATCTGT
66 GGTACCTGGCTTAAATCTGCCTCACTGCAACTTCAGGAAGCCAAGATTCACCGTCTTCGATCTGT
36008070 TT
131 TT
*
36008072 CACTGCAACTTCAAGGAAAC-AGAATCTAAAATTTT-AGCCTACTCCGCTACAACTTTAGGGAGC
1 CACTGCAACTTCAAGGAAACAAG-ATCTAAAATTTTCAGCCTACTCCACTACAACTTTA-GGAGC
*** * * *
36008135 TAGGTTGGTGGCTTAAATCTGCCTCACTGCAACTTCAGGAAGCCTAGATTTACTGTCTTCGATCT
64 TAGGTACCTGGCTTAAATCTGCCTCACTGCAACTTCAGGAAGCCAAGATTCACCGTCTTCGATCT
36008200 G
129 G
36008201 CTCTCTGTCA
Statistics
Matches: 111, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
129 22 0.20
130 37 0.33
131 1 0.01
132 51 0.46
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (132 bp):
CACTGCAACTTCAAGGAAACAAGATCTAAAATTTTCAGCCTACTCCACTACAACTTTAGGAGCTA
GGTACCTGGCTTAAATCTGCCTCACTGCAACTTCAGGAAGCCAAGATTCACCGTCTTCGATCTGT
TT
Found at i:36008240 original size:44 final size:44
Alignment explanation
Indices: 36008190--36008364 Score: 208
Period size: 44 Copynumber: 4.0 Consensus size: 44
36008180 AGATTTACTG
* * * *
36008190 TCTTCGATCTGCTCTCTGTCAACACAGAGATGCCAAATCTGCTA
1 TCTTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCTGCTA
* * * * * *
36008234 CCTTCGATCTAC-CCCCTGACAATATAGAGACGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCC-GCCAATACAGAGACGCCAAATCTGCTA
* *
36008278 TCTTCGATCTGCTCTCCACCAATACAGAGACGTCAAATCTGCTA
1 TCTTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCTGCTA
* *
36008322 TCTTTGATCTGCTCTCCGCCAATACAGAGATGCCAAATCTGCT
1 TCTTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCTGCT
36008365 GGATTCGCCA
Statistics
Matches: 108, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
43 2 0.02
44 103 0.95
45 3 0.03
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (44 bp):
TCTTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCTGCTA
Found at i:36020437 original size:130 final size:130
Alignment explanation
Indices: 36020116--36020469 Score: 363
Period size: 130 Copynumber: 2.7 Consensus size: 130
36020106 ATGTTCGATC
* ** ** * * **
36020116 ATTTTGAGCAAATGAGAAATCACAACCCAGTACGATAGGGCATGATTCTCGAATTGTCAAATGCC
1 ATTTTGAGCAAACGA-AAATTGCAACCCAACACGTTAGGGCACGATTCTCGAATTGTCAAATATC
* * * * **
36020181 GAATATTGCCTTCGTTTTAAATAATTTTTAGAAGATATGAATGAAATCTTGAAGGGATATTTGAT
65 GAATATCGCCTTCGTTTTAAAGAATTTTTAAAAGACATGAATGAAATCTTGAAGGGATATTCAAT
36020246 T
130 T
* * * * * **
36020247 ATTTTAAACAATCG-AAATTGCAACCCAACACGTTAGGGCACGATTCCACAAATTACCAAATATC
1 ATTTTGAGCAAACGAAAATTGCAACCCAACACGTTAGGGCACGATT-CTCGAATTGTCAAATATC
** * * * * *
36020311 GCGTATCGCCTTCG-TTTAAGGGA-TTTTAAAAGACATGAGTGAAATTTTGAAGTGATATTCAAT
65 GAATATCGCCTTCGTTTTAAAGAATTTTTAAAAGACATGAATGAAATCTTGAAGGGATATTCAAT
36020374 T
130 T
36020375 ATTTTGAGCAAACGCAAAATTGCAACCCAACACGTTAGGGCACGATTCTGCGAATTGTCAAATAT
1 ATTTTGAGCAAACG-AAAATTGCAACCCAACACGTTAGGGCACGATTCT-CGAATTGTCAAATAT
* * *
36020440 CAAATCTCGTCTTCGTTTTAAAGAATTTTT
64 CGAATATCGCCTTCGTTTTAAAGAATTTTT
36020470 GAATGAATGA
Statistics
Matches: 174, Mismatches: 43, Indels: 11
0.76 0.19 0.05
Matches are distributed among these distances:
128 45 0.26
129 32 0.18
130 76 0.44
131 17 0.10
132 4 0.02
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (130 bp):
ATTTTGAGCAAACGAAAATTGCAACCCAACACGTTAGGGCACGATTCTCGAATTGTCAAATATCG
AATATCGCCTTCGTTTTAAAGAATTTTTAAAAGACATGAATGAAATCTTGAAGGGATATTCAATT
Found at i:36022105 original size:18 final size:19
Alignment explanation
Indices: 36022071--36022111 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
36022061 AAATAAGTAA
36022071 ATAGATATATAGTTACATAT
1 ATAGATATATAG-TACATAT
36022091 ATAGATATATA-TACATAT
1 ATAGATATATAGTACATAT
36022109 ATA
1 ATA
36022112 CGAATGAGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 10 0.48
20 11 0.52
ACGTcount: A:0.49, C:0.05, G:0.07, T:0.39
Consensus pattern (19 bp):
ATAGATATATAGTACATAT
Found at i:36023777 original size:130 final size:132
Alignment explanation
Indices: 36023585--36023843 Score: 346
Period size: 132 Copynumber: 2.0 Consensus size: 132
36023575 CAATATGCTC
* * * * *
36023585 CACTGCAACTTTAGGGAGACAAGATCTACAATTTTCAGCTTACTCCACTACAACTTTAGGAGCTA
1 CACTGCAACTTCAAGGAAACAAGATCTACAAATTTCAGCCTACTCCACTACAACTTTAGGAGCTA
* *
36023650 GG-ACCT-GCTTAAATCTGCTTCACTGCATCTTCAGGAAGCCAAGATTCACCGTCTTCGATCTGT
66 GGTACCTGGCTTAAATCTGCCTCACTGCAACTTCAGGAAGCCAAGATTCACCGTCTTCGATCTGT
36023713 TT
131 TT
*
36023715 CACTGCAACTTCAAGGAAAC-AGAATCTA-AAATTTCAGCCTACTCCGCTACAACTTTAGGGAGC
1 CACTGCAACTTCAAGGAAACAAG-ATCTACAAATTTCAGCCTACTCCACTACAACTTTA-GGAGC
*** * * *
36023778 TAGGTTGGTGGCTTAAATCTGCCTCACTGCAACTTCAGGAAGCCTAGATTTACTGTCTTCGATCT
64 TAGGTACCTGGCTTAAATCTGCCTCACTGCAACTTCAGGAAGCCAAGATTCACCGTCTTCGATCT
36023843 G
129 G
36023844 CTCTCTGTCA
Statistics
Matches: 111, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
129 28 0.25
130 31 0.28
131 1 0.01
132 51 0.46
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (132 bp):
CACTGCAACTTCAAGGAAACAAGATCTACAAATTTCAGCCTACTCCACTACAACTTTAGGAGCTA
GGTACCTGGCTTAAATCTGCCTCACTGCAACTTCAGGAAGCCAAGATTCACCGTCTTCGATCTGT
TT
Found at i:36023883 original size:44 final size:44
Alignment explanation
Indices: 36023833--36024065 Score: 279
Period size: 44 Copynumber: 5.3 Consensus size: 44
36023823 AGATTTACTG
* * * *
36023833 TCTTCGATCTGCTCTCTGTCAACACAGAGATGCCAAATCTGCTA
1 TCTTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCTGCTA
* * * * * *
36023877 CCTTCGATCTAC-CCCCTGACAATATAGAGACGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCC-GCCAATACAGAGACGCCAAATCTGCTA
* *
36023921 TCTTCGATCTGCTCTCCACCAATACAGAGACGTCAAATCTGCTA
1 TCTTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCTGCTA
*
36023965 TCTTTGATCTGCTCTCCGCCAATACAGAGACGCCAAATCTGCTA
1 TCTTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCTGCTA
* * * *
36024009 TCTTCGATCTGCTCTCCACGAATACAGAGACACCAAATCTACTA
1 TCTTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCTGCTA
* *
36024053 TATTTGATCTGCT
1 TCTTCGATCTGCT
36024066 ATCTTTGATC
Statistics
Matches: 160, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
43 2 0.01
44 155 0.97
45 3 0.02
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.28
Consensus pattern (44 bp):
TCTTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCTGCTA
Found at i:36024067 original size:14 final size:14
Alignment explanation
Indices: 36024045--36024079 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
36024035 GAGACACCAA
*
36024045 ATCTACTATATTTG
1 ATCTGCTATATTTG
*
36024059 ATCTGCTATCTTTG
1 ATCTGCTATATTTG
36024073 ATCTGCT
1 ATCTGCT
36024080 CTCCGCCAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.20, C:0.20, G:0.11, T:0.49
Consensus pattern (14 bp):
ATCTGCTATATTTG
Found at i:36033951 original size:209 final size:209
Alignment explanation
Indices: 36033591--36034003 Score: 790
Period size: 209 Copynumber: 2.0 Consensus size: 209
36033581 GAGCACCTTT
36033591 AAATGAGAATTCACTCTGAGCAAGCCCATAGGTCGTGGGTACAAACTGCCTCGATTTATATTGCC
1 AAATGAGAATTCACTCTGAGCAAGCCCATAGGTCGTGGGTACAAACTGCCTCGATTTATATTGCC
*
36033656 TCAAGGCTATCAACGGAGTATATCCGGTAGCTCCCCAAATTCCTAACAACGGCACCCAATCAAAG
66 TCAAGGCTATCAACGGAGTATATCCGGTAGCTCCCAAAATTCCTAACAACGGCACCCAATCAAAG
* *
36033721 TTACCACATCGGTACATGATCTCATCAGGAGCCATCCAATAAGCTCTCCACTCGATATCCCCCTC
131 TTACCACATCGGTACATGATCTCATCAGGAACCATCCAATAAGCTCTCAACTCGATATCCCCCTC
36033786 CTTGAGGTTCTGAA
196 CTTGAGGTTCTGAA
36033800 AAATGAGAATTCACTCTGAGCAAGCCCATAGGTCGTGGGTACAAACTGCCTCGATTTATATTGCC
1 AAATGAGAATTCACTCTGAGCAAGCCCATAGGTCGTGGGTACAAACTGCCTCGATTTATATTGCC
36033865 TCAAGGCTATCAACGGAGTATATCCGGTAGCTCCCAAAATTCCTAACAACGGCACCCAATCAAAG
66 TCAAGGCTATCAACGGAGTATATCCGGTAGCTCCCAAAATTCCTAACAACGGCACCCAATCAAAG
*
36033930 TTACCACATCGGTACATGATCTCATTAGGAACCATCCAATAAGCTCTCAACTCGATATCCCCCTC
131 TTACCACATCGGTACATGATCTCATCAGGAACCATCCAATAAGCTCTCAACTCGATATCCCCCTC
36033995 CTTGAGGTT
196 CTTGAGGTT
36034004 TCGAAGAATG
Statistics
Matches: 200, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
209 200 1.00
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (209 bp):
AAATGAGAATTCACTCTGAGCAAGCCCATAGGTCGTGGGTACAAACTGCCTCGATTTATATTGCC
TCAAGGCTATCAACGGAGTATATCCGGTAGCTCCCAAAATTCCTAACAACGGCACCCAATCAAAG
TTACCACATCGGTACATGATCTCATCAGGAACCATCCAATAAGCTCTCAACTCGATATCCCCCTC
CTTGAGGTTCTGAA
Found at i:36036657 original size:130 final size:130
Alignment explanation
Indices: 36036336--36036689 Score: 358
Period size: 130 Copynumber: 2.7 Consensus size: 130
36036326 ATGTTCGATC
** ** * * **
36036336 ATTTTGAGCAAACGAGAAATCACAACCCAGTACGATAGGGCATGATTCTCGAATTGTCAAATGCC
1 ATTTTGAGCAAACGA-AAATTGCAACCCAACACGTTAGGGCACGATTCTCGAATTGTCAAATATC
* * * **
36036401 GAATATTGCCTTCGTTTTAAATAATTTTTAGAAGATATGGATGAAATCTTGAAGGGATATTTGAT
65 GAATATCGCCTTCGTTTTAAAGAATTTTTAGAAGACATGGATGAAATCTTGAAGGGATATTCAAT
36036466 T
130 T
* * * * * **
36036467 ATTTTAAACAATCG-AAATTGCAACCCAACACGTTAGGGCACGATTCAACAAATTACCAAATATC
1 ATTTTGAGCAAACGAAAATTGCAACCCAACACGTTAGGGCACGATTC-TCGAATTGTCAAATATC
** * * * *
36036531 GCGTATCGCCTTCG-TTTAAGGGA-TTTTA-AAGGACAT-GAGTGAAATTTTGAAGTGATATTCA
65 GAATATCGCCTTCGTTTTAAAGAATTTTTAGAA-GACATGGA-TGAAATCTTGAAGGGATATTCA
36036592 ATT
128 ATT
36036595 ATTTTGAGCAAACGCAAAATTGCAACCCAACACGTTAGGGCACGATTCTGCGAATTGTCAAATAT
1 ATTTTGAGCAAACG-AAAATTGCAACCCAACACGTTAGGGCACGATTCT-CGAATTGTCAAATAT
* * *
36036660 CAAATCTCGTCTTCGTTTTAAAGAATTTTT
64 CGAATATCGCCTTCGTTTTAAAGAATTTTT
36036690 GAATGAATGA
Statistics
Matches: 175, Mismatches: 40, Indels: 15
0.76 0.17 0.07
Matches are distributed among these distances:
127 4 0.02
128 41 0.23
129 32 0.18
130 76 0.43
131 18 0.10
132 4 0.02
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (130 bp):
ATTTTGAGCAAACGAAAATTGCAACCCAACACGTTAGGGCACGATTCTCGAATTGTCAAATATCG
AATATCGCCTTCGTTTTAAAGAATTTTTAGAAGACATGGATGAAATCTTGAAGGGATATTCAATT
Found at i:36038107 original size:147 final size:148
Alignment explanation
Indices: 36037949--36038249 Score: 358
Period size: 147 Copynumber: 2.0 Consensus size: 148
36037939 GATAAAATAC
* * * *
36037949 ATATAATAATAAATTAAAAAATATGTTATATAAGATTATATATTAAAAGACG-AGGATAAATTTA
1 ATATAATAATAAATTAAAAAATATATTATATAAGATTATACAATAAAAGACGAAAG-TAAATTTA
* * *
36038013 AA-AGAAACTATATGTGTAAAATAATAT-AGAATTAATAATATGCATAGAATAAAA-TAATCTTA
65 AAGA-AAACTATATGTGCAAAATAATATAAG-ATTAATAATATGCATAAAATAAAACTAACCTTA
*
36038075 CTATAAAGTACGTGTATATAT
128 CTATAAAGTACGTATATATAT
* * * * * * * * *
36038096 ATATAATAATAATTTGAAAGATGTATTATGTAGGATTATGCAATAAAATATGAAAGTAAATTTAA
1 ATATAATAATAAATTAAAAAATATATTATATAAGATTATACAATAAAAGACGAAAGTAAATTTAA
* *
36038161 AGAAAATTATATGTGCAAAATAATATAAGATTAATAATATGCATAAAATAAAACTAACCTTATTA
66 AGAAAACTATATGTGCAAAATAATATAAGATTAATAATATGCATAAAATAAAACTAACCTTACTA
* *
36038226 TAAAGTATGTATATATGT
131 TAAAGTACGTATATATAT
36038244 ATATAA
1 ATATAA
36038250 AGGGACATCT
Statistics
Matches: 129, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
147 94 0.73
148 35 0.27
ACGTcount: A:0.51, C:0.04, G:0.11, T:0.34
Consensus pattern (148 bp):
ATATAATAATAAATTAAAAAATATATTATATAAGATTATACAATAAAAGACGAAAGTAAATTTAA
AGAAAACTATATGTGCAAAATAATATAAGATTAATAATATGCATAAAATAAAACTAACCTTACTA
TAAAGTACGTATATATAT
Found at i:36038325 original size:18 final size:19
Alignment explanation
Indices: 36038291--36038331 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
36038281 AAATAAGTAA
36038291 ATAGATATATAGTTACATAT
1 ATAGATATATAG-TACATAT
36038311 ATAGATATATA-TACATAT
1 ATAGATATATAGTACATAT
36038329 ATA
1 ATA
36038332 CGAATAAGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 10 0.48
20 11 0.52
ACGTcount: A:0.49, C:0.05, G:0.07, T:0.39
Consensus pattern (19 bp):
ATAGATATATAGTACATAT
Found at i:36039997 original size:31 final size:32
Alignment explanation
Indices: 36039911--36039997 Score: 95
Period size: 31 Copynumber: 2.7 Consensus size: 32
36039901 GGATATTACA
* *
36039911 TTTACTGTCCTAGTGGACTATCTCTATTTTGTG
1 TTTACTGTCCCAATGGACTATCTC-ATTTTGTG
* * * *
36039944 TTGATTGTCCCAACGGATTATCTC-TTTTGTG
1 TTTACTGTCCCAATGGACTATCTCATTTTGTG
*
36039975 TTTACTGTCCCATTGGACTATCT
1 TTTACTGTCCCAATGGACTATCT
36039998 TTGTTTTGTG
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
31 25 0.58
33 18 0.42
ACGTcount: A:0.16, C:0.21, G:0.17, T:0.46
Consensus pattern (32 bp):
TTTACTGTCCCAATGGACTATCTCATTTTGTG
Found at i:36045376 original size:2 final size:2
Alignment explanation
Indices: 36045369--36045399 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
36045359 TCTATGACTC
36045369 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
36045400 CTTTTTATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:36047306 original size:30 final size:30
Alignment explanation
Indices: 36047272--36047330 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
36047262 TCCTTTTGCA
*
36047272 CCACCACCACCGCACTTA-TATGGTGCACCC
1 CCACCACCACCGC-CTTACTATGCTGCACCC
*
36047302 CCACCACCTCCGCCTTACTATGCTGCACC
1 CCACCACCACCGCCTTACTATGCTGCACC
36047331 TCCTCCTCCC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 4 0.15
30 22 0.85
ACGTcount: A:0.20, C:0.49, G:0.12, T:0.19
Consensus pattern (30 bp):
CCACCACCACCGCCTTACTATGCTGCACCC
Found at i:36049699 original size:17 final size:17
Alignment explanation
Indices: 36049677--36049712 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
36049667 GTAGTATGTA
36049677 GTGTCATTCACAACATT
1 GTGTCATTCACAACATT
36049694 GTGTCATTCACAACATT
1 GTGTCATTCACAACATT
36049711 GT
1 GT
36049713 AAGTCATAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (17 bp):
GTGTCATTCACAACATT
Found at i:36052358 original size:22 final size:22
Alignment explanation
Indices: 36052316--36052358 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
36052306 ATTGAAAAAA
*
36052316 ATATATTTATAATTGATATTTT
1 ATATATTTATAATTGAAATTTT
36052338 ATATATTTTATAATT-AAATTT
1 ATATA-TTTATAATTGAAATTT
36052359 AAATTTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (22 bp):
ATATATTTATAATTGAAATTTT
Found at i:36052789 original size:7 final size:7
Alignment explanation
Indices: 36052749--36052798 Score: 50
Period size: 7 Copynumber: 7.4 Consensus size: 7
36052739 TGATTTTTTA
36052749 TTATATT
1 TTATATT
*
36052756 TTAGATT
1 TTATATT
*
36052763 TTATAAT
1 TTATATT
36052770 TT-T-TT
1 TTATATT
**
36052775 GAATATT
1 TTATATT
36052782 TTATATT
1 TTATATT
36052789 TTATATT
1 TTATATT
36052796 TTA
1 TTA
36052799 AATGTAAAAG
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
5 1 0.03
6 2 0.06
7 30 0.91
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (7 bp):
TTATATT
Found at i:36055348 original size:28 final size:28
Alignment explanation
Indices: 36055290--36055349 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
36055280 ATTAATTATT
**
36055290 AAAAAATATTTAAACATTTAAAATTTGAC
1 AAAAAATATTTAAACATTT-AAATTAAAC
*
36055319 AAAAAATATTTTAACATTT-AATTCAAAC
1 AAAAAATATTTAAACATTTAAATT-AAAC
36055347 AAA
1 AAA
36055350 TTTTTAATCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 4 0.15
28 5 0.19
29 18 0.67
ACGTcount: A:0.57, C:0.08, G:0.02, T:0.33
Consensus pattern (28 bp):
AAAAAATATTTAAACATTTAAATTAAAC
Found at i:36057364 original size:179 final size:179
Alignment explanation
Indices: 36057032--36057390 Score: 506
Period size: 179 Copynumber: 2.0 Consensus size: 179
36057022 AAATAATTAT
*
36057032 AGTACATTTAGTATACTTAATTATGTATTTACGTGTTTAAATTTCTTTTTACTAACAATTTAATC
1 AGTACATTTAGTATACTTAATTATGTATTTACGTGTTTAAATTTCTTTTTACTAACAATTAAATC
* * ** * *
36057097 TAATTTTTTTTAATAAAATATCGTACATATTGTATGTGTTATTATTAATTAATTTTAAACCTCAC
66 TAAATTTTTTTAACAAAATATCGTACATATTACACGTGTTATTATTAATTAATTTCAAACCTCAC
* * * *
36057162 GTTTTTATTGTTTATCATATGTTATATTCAAATGCACACATGTATTCTA
131 ATTTTAATTATTTATCATATGTTATATTCAAATGCACACAAGTATTCTA
** *
36057211 AGTACATTTAGTATTTTTAATATGATGTATTTGCGTGTTT-AATTT-TTTTTACTAACAATTAAA
1 AGTACATTTAGTATACTTAAT-T-ATGTATTTACGTGTTTAAATTTCTTTTTACTAACAATTAAA
* * *
36057274 TCTAAATTTTTTTAACAAAATATTGTACATATTACACGTGTTATTATTAATTTATTTCAAACCTT
64 TCTAAATTTTTTTAACAAAATATCGTACATATTACACGTGTTATTATTAATTAATTTCAAACCTC
** *
36057339 ACATTTTAATTATTTATTGTATGTTATATTCAAATGTACACAAGTATTCTA
129 ACATTTTAATTATTTATCATATGTTATATTCAAATGCACACAAGTATTCTA
36057390 A
1 A
36057391 ATATATGATT
Statistics
Matches: 158, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
179 137 0.87
180 6 0.04
181 15 0.09
ACGTcount: A:0.33, C:0.10, G:0.08, T:0.49
Consensus pattern (179 bp):
AGTACATTTAGTATACTTAATTATGTATTTACGTGTTTAAATTTCTTTTTACTAACAATTAAATC
TAAATTTTTTTAACAAAATATCGTACATATTACACGTGTTATTATTAATTAATTTCAAACCTCAC
ATTTTAATTATTTATCATATGTTATATTCAAATGCACACAAGTATTCTA
Found at i:36061950 original size:21 final size:19
Alignment explanation
Indices: 36061926--36061966 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
36061916 AAAAAAACTT
36061926 AATATAAATAAAATATATGAA
1 AATATAAAT--AATATATGAA
*
36061947 AATATTAATAATATATGAA
1 AATATAAATAATATATGAA
36061966 A
1 A
36061967 GTGTTTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 11 0.58
21 8 0.42
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (19 bp):
AATATAAATAATATATGAA
Found at i:36063559 original size:44 final size:44
Alignment explanation
Indices: 36063507--36063922 Score: 219
Period size: 44 Copynumber: 9.5 Consensus size: 44
36063497 GCCTGTTTCC
*
36063507 CTACTGCTTAGGGGGATAAGGCTCACCGTCTTCGATCTGCTCCA
1 CTACTGCTTAGGGAGATAAGGCTCACCGTCTTCGATCTGCTCCA
** * *** * * * **
36063551 CTGTTGCTTAGGGAGATAA-GATCTATAATTTTTG-GCTTATTTCC-
1 CTACTGCTTAGGGAGATAAGGCTC-ACCGTCTTCGATC-T-GCTCCA
* *
36063595 CTACTGCTTAGGGGGATAAGGCTTACCGTCTTCGATCTGCTCCA
1 CTACTGCTTAGGGAGATAAGGCTCACCGTCTTCGATCTGCTCCA
* * ** * * * * *
36063639 CTACTGCTTAGGGAGATAAGATCTGTA-ATTTTTAG-CCTGTTTTC-
1 CTACTGCTTAGGGAGATAAG-GCT-CACCGTCTTCGATCTG-CTCCA
36063683 CTACTGCTTTAGGG-GATAAGGCTCACCGTCTTCGATCTGCTCCA
1 CTACTGC-TTAGGGAGATAAGGCTCACCGTCTTCGATCTGCTCCA
* ** ***** * * *
36063727 CTATTGCTTAGGGAGATAAGATTTGTAAT-TTCCAGCTTGTTTCC-
1 CTACTGCTTAGGGAGATAAGGCTCACCGTCTTCGATC-TG-CTCCA
* *
36063771 CTACTGCTTAGGGGGATAAGGCTCACTGTCTTCGATCTGCTCCA
1 CTACTGCTTAGGGAGATAAGGCTCACCGTCTTCGATCTGCTCCA
* * * * * *
36063815 CTACTGCTTAGGGAGATAA-GAT--CTGTAATTTCTAGCCTGTTTCC-
1 CTACTGCTTAGGGAGATAAGGCTCACCGT--CTTCGA-TCTG-CTCCA
* * *
36063859 CTATTGCTTAGGGGGATAAGGCTCACCGTCTTCGATCTACTCCA
1 CTACTGCTTAGGGAGATAAGGCTCACCGTCTTCGATCTGCTCCA
36063903 CTACTGCTTAGGGAGATAAG
1 CTACTGCTTAGGGAGATAAG
36063923 ATCTGTAATC
Statistics
Matches: 263, Mismatches: 83, Indels: 52
0.66 0.21 0.13
Matches are distributed among these distances:
41 4 0.02
42 1 0.00
43 38 0.14
44 178 0.68
45 37 0.14
46 2 0.01
47 3 0.01
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.34
Consensus pattern (44 bp):
CTACTGCTTAGGGAGATAAGGCTCACCGTCTTCGATCTGCTCCA
Found at i:36063651 original size:88 final size:88
Alignment explanation
Indices: 36063486--36064409 Score: 1217
Period size: 88 Copynumber: 10.5 Consensus size: 88
36063476 GCTTATGATT
* *
36063486 TGTAATCTTCAGCCTGTTTCCCTACTGCTTAGGGGGATAAGGCTCACCGTCTTCGATCTGCTCCA
1 TGTAATTTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCA
**
36063551 CTGTTGCTTAGGGAGATAAGATC
66 CTACTGCTTAGGGAGATAAGATC
* ** * * * *
36063574 TATAATTTTTGGCTTATTTCCCTACTGCTTAGGGGGATAAGGCTTACCGTCTTCGATCTGCTCCA
1 TGTAATTTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCA
36063639 CTACTGCTTAGGGAGATAAGATC
66 CTACTGCTTAGGGAGATAAGATC
* * *
36063662 TGTAATTTTTAGCCTGTTTTCCTACTGCTTTA-GGGGATAAGGCTCACCGTCTTCGATCTGCTCC
1 TGTAATTTTCAGCCTGTTTCCCTACTGC-TTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCC
* *
36063726 ACTATTGCTTAGGGAGATAAGATT
65 ACTACTGCTTAGGGAGATAAGATC
* * * *
36063750 TGTAATTTCCAGCTTGTTTCCCTACTGCTTAGGGGGATAAGGCTCACTGTCTTCGATCTGCTCCA
1 TGTAATTTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCA
36063815 CTACTGCTTAGGGAGATAAGATC
66 CTACTGCTTAGGGAGATAAGATC
* * *
36063838 TGTAA-TTTCTAGCCTGTTTCCCTATTGCTTAGGGGGATAAGGCTCACCGTCTTCGATCTACTCC
1 TGTAATTTTC-AGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCC
36063902 ACTACTGCTTAGGGAGATAAGATC
65 ACTACTGCTTAGGGAGATAAGATC
* * * * * *
36063926 TGTAATCTTCAGCCTATTTTCCTACTGCTTAGGGGGTTAAGGCTCACTGTTTTCGAT-TCGCTTC
1 TGTAATTTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCT-GCTCC
* *
36063990 ACTACTGCTCAGGGAGATAAGATA
65 ACTACTGCTTAGGGAGATAAGATC
* * * * * * *
36064014 TGTAATCTTCAGCCTGTTTCCCTACTGTTTAGGAGGTTAAGGCTCACCGTTTTTGATCCGCTTCA
1 TGTAATTTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCA
*
36064079 CTACTGCTTAGGGAAATAAGATC
66 CTACTGCTTAGGGAGATAAGATC
* * * *
36064102 TGTAATTTTCAGCCTGTTTCCCTACTACTTAGGGGGTTAAGGCTTATCGCCTTCGAT-TCGCTCC
1 TGTAATTTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCT-GCTCC
* * *
36064166 ATTACTGCTCAGAGAGATAAGATC
65 ACTACTGCTTAGGGAGATAAGATC
* * * ** *
36064190 TGTAATCTTCAGCCTGTTTCCCTACTACTTAGGGGGTTAAGGCTCACCGTTTTCGATCCACTTCA
1 TGTAATTTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCA
* ***
36064255 CTACTACTTTTTGAGATAAGATC
66 CTACTGCTTAGGGAGATAAGATC
* * * *
36064278 TGTAATTTCCAGCCTGTTTCCCTACTACTTAGGGGGTTAAGGCTCACCATCTTCGATCTACTCCA
1 TGTAATTTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCA
*
36064343 CTACTGCTTATGGAGATAAGATC
66 CTACTGCTTAGGGAGATAAGATC
* *
36064366 TGTAATTTCCAGCCTGTTTCCCTACTGCTTAGGTGGTTAAGGCT
1 TGTAATTTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCT
36064410 AGTGGAGGTT
Statistics
Matches: 738, Mismatches: 90, Indels: 16
0.87 0.11 0.02
Matches are distributed among these distances:
87 7 0.01
88 725 0.98
89 6 0.01
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (88 bp):
TGTAATTTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCA
CTACTGCTTAGGGAGATAAGATC
Found at i:36063951 original size:44 final size:44
Alignment explanation
Indices: 36063555--36064046 Score: 148
Period size: 44 Copynumber: 11.2 Consensus size: 44
36063545 GCTCCACTGT
* * ** *
36063555 TGCTTAGGGAGATAAGATCTATAATTTTTGGCTTATTTCCCTAC
1 TGCTTAGGGAGATAAGATCTGTAATCTTCAGCCTATTTCCCTAC
* * * * **
36063599 TGCTTAGGGGGATAAG-GCT-TACCGTCTTC-GATCT-GCTCCACTAC
1 TGCTTAGGGAGATAAGATCTGTA--ATCTTCAG-CCTATTTCC-CTAC
* * * *
36063643 TGCTTAGGGAGATAAGATCTGTAATTTTTAGCCTGTTTTCCTAC
1 TGCTTAGGGAGATAAGATCTGTAATCTTCAGCCTATTTCCCTAC
* * * * ** *
36063687 TGCTTTAGGG-GATAAG-GCT-CACCGTCTTC-GATCT-GCTCCACTAT
1 TGC-TTAGGGAGATAAGATCTGTA--ATCTTCAG-CCTATTTCC-CTAC
* * *
36063731 TGCTTAGGGAGATAAGATTTGTAAT-TTCCAGCTTGTTTCCCTAC
1 TGCTTAGGGAGATAAGATCTGTAATCTT-CAGCCTATTTCCCTAC
* * ** * * **
36063775 TGCTTAGGGGGATAAGGCTCACT-GTCTTC-GATCT-GCTCCACTAC
1 TGCTTAGGGAGATAA-GATCTGTAATCTTCAG-CCTATTTCC-CTAC
* *
36063819 TGCTTAGGGAGATAAGATCTGTAAT-TTCTAGCCTGTTTCCCTAT
1 TGCTTAGGGAGATAAGATCTGTAATCTTC-AGCCTATTTCCCTAC
* * * * * *
36063863 TGCTTAGGGGGATAAG-GCT-CACCGTCTTC-GATCTA-CTCCACTAC
1 TGCTTAGGGAGATAAGATCTGTA--ATCTTCAG-CCTATTTCC-CTAC
*
36063907 TGCTTAGGGAGATAAGATCTGTAATCTTCAGCCTATTTTCCTAC
1 TGCTTAGGGAGATAAGATCTGTAATCTTCAGCCTATTTCCCTAC
* * * ** *
36063951 TGCTTAGGGGGTTAAGGCTCACTGTTTTCGATTC-G-C---TTCACTAC
1 TGCTTAGGGAGATAA-GAT--CTGTAATC--TTCAGCCTATTTCCCTAC
* * *
36063995 TGCTCAGGGAGATAAGATATGTAATCTTCAGCCTGTTTCCCTAC
1 TGCTTAGGGAGATAAGATCTGTAATCTTCAGCCTATTTCCCTAC
*
36064039 TGTTTAGG
1 TGCTTAGG
36064047 AGGTTAAGGC
Statistics
Matches: 314, Mismatches: 88, Indels: 92
0.64 0.18 0.19
Matches are distributed among these distances:
39 3 0.01
40 1 0.00
41 6 0.02
42 4 0.01
43 38 0.12
44 212 0.68
45 35 0.11
46 4 0.01
47 7 0.02
48 1 0.00
49 3 0.01
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.35
Consensus pattern (44 bp):
TGCTTAGGGAGATAAGATCTGTAATCTTCAGCCTATTTCCCTAC
Found at i:36076381 original size:21 final size:19
Alignment explanation
Indices: 36076357--36076397 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
36076347 AAAAAAGCTT
36076357 AATATAAATAAAATATATGAA
1 AATATAAAT--AATATATGAA
*
36076378 AATATTAATAATATATGAA
1 AATATAAATAATATATGAA
36076397 A
1 A
36076398 GTGTTTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 11 0.58
21 8 0.42
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (19 bp):
AATATAAATAATATATGAA
Found at i:36082264 original size:236 final size:236
Alignment explanation
Indices: 36081851--36082323 Score: 946
Period size: 236 Copynumber: 2.0 Consensus size: 236
36081841 CTATATAGTT
36081851 CCAAATATTGACCATTGCCTTACTTTATAAAATACGTGTGAAAATTCTGAGGAGATATTCGATTA
1 CCAAATATTGACCATTGCCTTACTTTATAAAATACGTGTGAAAATTCTGAGGAGATATTCGATTA
36081916 TTTTGGACAAATGAAAAAGCGCAACCCAGCACGATAGGGCTCGATTCTCAAATCGTCGAACATTG
66 TTTTGGACAAATGAAAAAGCGCAACCCAGCACGATAGGGCTCGATTCTCAAATCGTCGAACATTG
36081981 AACATCGTCTTTGTTTTTAAGTATTTTTTTTAAAACATGAATGAAAAAGTAAAGGAATGTTCGAT
131 AACATCGTCTTTGTTTTTAAGTATTTTTTTTAAAACATGAATGAAAAAGTAAAGGAATGTTCGAT
36082046 CATTTTGAGCAAACCAGAAACCACAACCCAGCACGATAGGG
196 CATTTTGAGCAAACCAGAAACCACAACCCAGCACGATAGGG
36082087 CCAAATATTGACCATTGCCTTACTTTATAAAATACGTGTGAAAATTCTGAGGAGATATTCGATTA
1 CCAAATATTGACCATTGCCTTACTTTATAAAATACGTGTGAAAATTCTGAGGAGATATTCGATTA
36082152 TTTTGGACAAATGAAAAAGCGCAACCCAGCACGATAGGGCTCGATTCTCAAATCGTCGAACATTG
66 TTTTGGACAAATGAAAAAGCGCAACCCAGCACGATAGGGCTCGATTCTCAAATCGTCGAACATTG
36082217 AACATCGTCTTTGTTTTTAAGTATTTTTTTTAAAACATGAATGAAAAAGTAAAGGAATGTTCGAT
131 AACATCGTCTTTGTTTTTAAGTATTTTTTTTAAAACATGAATGAAAAAGTAAAGGAATGTTCGAT
36082282 CATTTTGAGCAAACCAGAAACCACAACCCAGCACGATAGGG
196 CATTTTGAGCAAACCAGAAACCACAACCCAGCACGATAGGG
36082323 C
1 C
36082324 ATGATTCCCG
Statistics
Matches: 237, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
236 237 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (236 bp):
CCAAATATTGACCATTGCCTTACTTTATAAAATACGTGTGAAAATTCTGAGGAGATATTCGATTA
TTTTGGACAAATGAAAAAGCGCAACCCAGCACGATAGGGCTCGATTCTCAAATCGTCGAACATTG
AACATCGTCTTTGTTTTTAAGTATTTTTTTTAAAACATGAATGAAAAAGTAAAGGAATGTTCGAT
CATTTTGAGCAAACCAGAAACCACAACCCAGCACGATAGGG
Found at i:36085795 original size:43 final size:44
Alignment explanation
Indices: 36085559--36086331 Score: 224
Period size: 45 Copynumber: 17.6 Consensus size: 44
36085549 TGTTTTTATC
* * * *
36085559 CTGCTCTACTGCAACTTCAGAG-AGATAAGGATT-GTGACTTAGATT
1 CTGCTCCACTGCAACTTCAGGGAAGCT-A-GATTAGTGACTTA-AAT
* * * ** *
36085604 TTGCTCCACTACAACTTTAGGGAA-CTAGGGT-GATGGCTTAAAT
1 CTGCTCCACTGCAACTTCAGGGAAGCTAGATTAG-TGACTTAAAT
* * * * * **
36085647 CTGCTTCACTGCAACTTCA-AGAAGCCAAGATTCGTTGTCTTCGAT
1 CTGCTCCACTGCAACTTCAGGGAAG-CTAGATTAG-TGACTTAAAT
* * * * ** * * *
36085692 CTGCTCCATTGTAACTTCAGGGAAACAAGATCTA-AAATTTTAAC
1 CTGCTCCACTGCAACTTCAGGGAAGCTAGAT-TAGTGACTTAAAT
* * * * *
36085736 CTACTCCACTACAACTTTAGAG-AGCTAGGTTAGTGACTTAAAT
1 CTGCTCCACTGCAACTTCAGGGAAGCTAGATTAGTGACTTAAAT
* * * **
36085779 CTGCTTCACTGCAACTTCA-GGAAGCTAAGATTCGTCGTCTTCGAT
1 CTGCTCCACTGCAACTTCAGGGAAGCT-AGATTAGT-GACTTAAAT
* * ** * * *
36085824 CTGCTCCACTGCAACTTCAGGGAAACAAGATCTA-AAATTTCAAC
1 CTGCTCCACTGCAACTTCAGGGAAGCTAGAT-TAGTGACTTAAAT
* * * * *
36085868 CTACTCCACTACAACTTTAGGG-AGCTAGGTTAGTTACTTAAAT
1 CTGCTCCACTGCAACTTCAGGGAAGCTAGATTAGTGACTTAAAT
* * * * * *
36085911 CTGCTTCACTGCAACTTC-CGGAAGCCAAGATTCGTCGTCTTCAAT
1 CTGCTCCACTGCAACTTCAGGGAAG-CTAGATTAGT-GACTTAAAT
* ** * * *
36085956 CTGCTCCACTGCAACTTCAGGGAA-ATAAGATCTA-AAATTTCAAC
1 CTGCTCCACTGCAACTTCAGGGAAGCT-AGAT-TAGTGACTTAAAT
* * * * * * *
36086000 CTACTCCACTACAACTTTAGGG-AGCTAGGTTGGTGGCTTAAGT
1 CTGCTCCACTGCAACTTCAGGGAAGCTAGATTAGTGACTTAAAT
* * * * **
36086043 CTGCTTCACTGCAACTTCA-GGAAGCCAAGATTCGTCGTCTTCGAT
1 CTGCTCCACTGCAACTTCAGGGAAG-CTAGATTAGT-GACTTAAAT
* * * * *
36086088 CTGCTCCACTGCAACTTCAGGGAA-ATAAGATCTAAT-ATTTCAAC
1 CTGCTCCACTGCAACTTCAGGGAAGCT-AGAT-TAGTGACTTAAAT
* * * * * *
36086132 CTACTCCACTACAACTTTAGGG-AGCTAGGTTGGTGGCTTAAAT
1 CTGCTCCACTGCAACTTCAGGGAAGCTAGATTAGTGACTTAAAT
* * * * * * **
36086175 CTACTTCACTGTAACTTCA-GGAAGCTCAGATTCGCCGTCTTCGAT
1 CTGCTCCACTGCAACTTCAGGGAAGCT-AGATTAG-TGACTTAAAT
* * * ** * * **
36086220 CTGCTTCACTGCAACTTCAGGGAAACAAGATCTA-AAATTTTAGC
1 CTGCTCCACTGCAACTTCAGGGAAGCTAGAT-TAGTGACTTAAAT
* * * * *
36086264 CTACTCCACTACAACTTTAGGG-AGCTAGGTTAGTGGCTTAAAT
1 CTGCTCCACTGCAACTTCAGGGAAGCTAGATTAGTGACTTAAAT
*
36086307 CTACGT-CACTGCAACTTCA-GGAAGC
1 CTGC-TCCACTGCAACTTCAGGGAAGC
36086332 CAAGATTCAT
Statistics
Matches: 506, Mismatches: 184, Indels: 78
0.66 0.24 0.10
Matches are distributed among these distances:
42 21 0.04
43 152 0.30
44 148 0.29
45 157 0.31
46 28 0.06
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (44 bp):
CTGCTCCACTGCAACTTCAGGGAAGCTAGATTAGTGACTTAAAT
Found at i:36085834 original size:45 final size:45
Alignment explanation
Indices: 36085644--36086240 Score: 265
Period size: 45 Copynumber: 13.5 Consensus size: 45
36085634 TGATGGCTTA
* * * *
36085644 AATCTGCTTCACTGCAACTTCAAGAAGCCAAGATTCGTTGTCTTC
1 AATCTGCTCCACTGCAACTTCAGGAAGCTAAGATTCGTCGTCTTC
* * * * ** *
36085689 GATCTGCTCCATTGTAACTTCAGGGAAAC-AAGA-TC-TAAAAT-TTT
1 AATCTGCTCCACTGCAACTTCA-GGAAGCTAAGATTCGT--CGTCTTC
* * * * * * * *
36085733 AACCTACTCCACTACAACTTTA-GAGAGCT-AGGTTAGT-GACTTA
1 AATCTGCTCCACTGCAACTTCAGGA-AGCTAAGATTCGTCGTCTTC
*
36085776 AATCTGCTTCACTGCAACTTCAGGAAGCTAAGATTCGTCGTCTTC
1 AATCTGCTCCACTGCAACTTCAGGAAGCTAAGATTCGTCGTCTTC
* * **
36085821 GATCTGCTCCACTGCAACTTCAGGGAAAC-AAGA-TC-TAAAAT-TTC
1 AATCTGCTCCACTGCAACTTCA-GGAAGCTAAGATTCGT--CGTCTTC
* * * * * * * *
36085865 AACCTACTCCACTACAACTTTAGGGAGCT-AGGTTAGT--TACTTA
1 AATCTGCTCCACTGCAACTTCAGGAAGCTAAGATTCGTCGT-CTTC
* * *
36085908 AATCTGCTTCACTGCAACTTCCGGAAGCCAAGATTCGTCGTCTTC
1 AATCTGCTCCACTGCAACTTCAGGAAGCTAAGATTCGTCGTCTTC
* **
36085953 AATCTGCTCCACTGCAACTTCAGGGAA-ATAAGA-TC-TAAAAT-TTC
1 AATCTGCTCCACTGCAACTTCA-GGAAGCTAAGATTCGT--CGTCTTC
* * * * * * * *
36085997 AACCTACTCCACTACAACTTTAGGGAGCT-AGGTTGGT-GGCTT-
1 AATCTGCTCCACTGCAACTTCAGGAAGCTAAGATTCGTCGTCTTC
* *
36086039 AAGTCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTC
1 AA-TCTGCTCCACTGCAACTTCAGGAAGCTAAGATTCGTCGTCTTC
* * ** *
36086085 GATCTGCTCCACTGCAACTTCAGGGAA-ATAAGA-TC-TAATATTTC
1 AATCTGCTCCACTGCAACTTCA-GGAAGCTAAGATTCGTCGT-CTTC
* * * * * * * * *
36086129 AACCTACTCCACTACAACTTTAGGGAGCT-AGGTTGGT-GGCTTA
1 AATCTGCTCCACTGCAACTTCAGGAAGCTAAGATTCGTCGTCTTC
* * * * *
36086172 AATCTACTTCACTGTAACTTCAGGAAGCTCAGATTCGCCGTCTTC
1 AATCTGCTCCACTGCAACTTCAGGAAGCTAAGATTCGTCGTCTTC
* *
36086217 GATCTGCTTCACTGCAACTTCAGG
1 AATCTGCTCCACTGCAACTTCAGG
36086241 GAAACAAGAT
Statistics
Matches: 395, Mismatches: 117, Indels: 80
0.67 0.20 0.14
Matches are distributed among these distances:
41 1 0.00
42 4 0.01
43 118 0.30
44 117 0.30
45 136 0.34
46 19 0.05
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (45 bp):
AATCTGCTCCACTGCAACTTCAGGAAGCTAAGATTCGTCGTCTTC
Found at i:36086408 original size:132 final size:132
Alignment explanation
Indices: 36085607--36086384 Score: 1209
Period size: 132 Copynumber: 5.9 Consensus size: 132
36085597 TTAGATTTTG
* * *
36085607 CTCCACTACAACTTTAGGGAACTAGGGT-GATGGCTTAAATCTGCTTCACTGCAACTTCAAGAAG
1 CTCCACTACAACTTTAGGGAGCTAGGTTAG-TGGCTTAAATCTGCTTCACTGCAACTTCAGGAAG
* * * *
36085671 CCAAGATTCGTTGTCTTCGATCTGCTCCATTGTAACTTCAGGGAAACAAGATCTAAAATTTTAAC
65 CCAAGATTCGTCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAAC
36085736 CTA
130 CTA
* *
36085739 CTCCACTACAACTTTAGAGAGCTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGGAAGC
1 CTCCACTACAACTTTAGGGAGCTAGGTTAGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGC
*
36085804 TAAGATTCGTCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAACC
66 CAAGATTCGTCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAACC
36085869 TA
131 TA
** *
36085871 CTCCACTACAACTTTAGGGAGCTAGGTTAGTTACTTAAATCTGCTTCACTGCAACTTCCGGAAGC
1 CTCCACTACAACTTTAGGGAGCTAGGTTAGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGC
* *
36085936 CAAGATTCGTCGTCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAACC
66 CAAGATTCGTCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAACC
36086001 TA
131 TA
* *
36086003 CTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAGTCTGCTTCACTGCAACTTCAGGAAGC
1 CTCCACTACAACTTTAGGGAGCTAGGTTAGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGC
* *
36086068 CAAGATTCGTCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAATAAGATCTAATATTTCAACC
66 CAAGATTCGTCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAACC
36086133 TA
131 TA
* * *
36086135 CTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTACTTCACTGTAACTTCAGGAAGC
1 CTCCACTACAACTTTAGGGAGCTAGGTTAGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGC
* * * *
36086200 TC-AGATTCGCCGTCTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAATTTTAGC
66 -CAAGATTCGTCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAAC
36086264 CTA
130 CTA
* *
36086267 CTCCACTACAACTTTAGGGAGCTAGGTTAGTGGCTTAAATCTACGTCACTGCAACTTCAGGAAGC
1 CTCCACTACAACTTTAGGGAGCTAGGTTAGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGC
* * * ** * *
36086332 CAAGATTCATCGCCTTTGATCTGCTCCACTATAACTTTAGGGAAACAGGATCT
66 CAAGATTCGTCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCT
36086385 GTGGGATTCA
Statistics
Matches: 599, Mismatches: 44, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
131 1 0.00
132 596 0.99
133 2 0.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (132 bp):
CTCCACTACAACTTTAGGGAGCTAGGTTAGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGC
CAAGATTCGTCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAACC
TA
Found at i:36091215 original size:198 final size:198
Alignment explanation
Indices: 36090877--36091261 Score: 716
Period size: 198 Copynumber: 1.9 Consensus size: 198
36090867 TTTCAAGAAT
36090877 AAAAGAATTCGAAAGTAATCATTTGTATGGTTATGAATGGAATTGAAAGGACGAGATAACATTTG
1 AAAAGAATTCGAAAGTAATCATTTGTATGGTTATGAATGGAATTGAAAGGACGAGATAACATTTG
* *
36090942 CTCAAAAATGATAATAACCGTGCATTTTATTGAAATGTCGTTTTTAAACATCGGCCTATTTCACA
66 CTCAAAAATGATAATAACCGTGCATTTTATTGAAATATCGTTTTTAAACATCAGCCTATTTCACA
*
36091007 AAAGATTCTTATTACTCCTAGGCCTAGAGCAATAAGTGTGTTTTGGACATTACTCTGGGAATGTT
131 AAAGATTCTTATCACTCCTAGGCCTAGAGCAATAAGTGTGTTTTGGACATTACTCTGGGAATGTT
36091072 TCA
196 TCA
36091075 AAAAGAATTCGAAAGTAATCATTTGTATGGTTATGAATGGAATTGAAAGGACGAGATAACATTTG
1 AAAAGAATTCGAAAGTAATCATTTGTATGGTTATGAATGGAATTGAAAGGACGAGATAACATTTG
* *
36091140 CTCAAAAATGATAATAACCGTGTATTTTATTGAAATATCGTTTTTAAACATCAGCCTATTTTACA
66 CTCAAAAATGATAATAACCGTGCATTTTATTGAAATATCGTTTTTAAACATCAGCCTATTTCACA
*
36091205 AAAGATTCTTATCACTTCTAGGCCTAGAGCAATAAGTGTGTTTTGGACATTACTCTG
131 AAAGATTCTTATCACTCCTAGGCCTAGAGCAATAAGTGTGTTTTGGACATTACTCTG
36091262 AATCCGTTCT
Statistics
Matches: 181, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
198 181 1.00
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (198 bp):
AAAAGAATTCGAAAGTAATCATTTGTATGGTTATGAATGGAATTGAAAGGACGAGATAACATTTG
CTCAAAAATGATAATAACCGTGCATTTTATTGAAATATCGTTTTTAAACATCAGCCTATTTCACA
AAAGATTCTTATCACTCCTAGGCCTAGAGCAATAAGTGTGTTTTGGACATTACTCTGGGAATGTT
TCA
Found at i:36138422 original size:40 final size:39
Alignment explanation
Indices: 36138335--36138653 Score: 173
Period size: 40 Copynumber: 8.5 Consensus size: 39
36138325 AAGTGAGTCT
* *
36138335 AGCTCTAGTTGGATTAACC--A-ACAATA-TTTGTA-CCC
1 AGCTCTAGTTGGATAAACCGAAGATAATATTTTG-AGCCC
*
36138370 AG-TGCTAGTTGGATGAACCGAAGATAATGATTTTGAGCCC
1 AGCT-CTAGTTGGATAAACCGAAGATAAT-ATTTTGAGCCC
* * *
36138410 AGCTCTAGTTGGATTAA-C-TA-ACAATA-TTTGTA-CCC
1 AGCTCTAGTTGGATAAACCGAAGATAATATTTTG-AGCCC
*
36138445 AG-TGCTAGTTGGATGAACCGAAGATAATGATTTTGAGCCC
1 AGCT-CTAGTTGGATAAACCGAAGATAAT-ATTTTGAGCCC
* * *
36138485 AGCTCTAGTCGGATTAACC--A-ACAATA-TTTGCA-CCC
1 AGCTCTAGTTGGATAAACCGAAGATAATATTTTG-AGCCC
* * * *
36138520 AG-TGCTAGTCGGATAAATCGACGATAATGATTGTGAGCCC
1 AGCT-CTAGTTGGATAAACCGAAGATAAT-ATTTTGAGCCC
* *
36138560 AGCTCTAGTTGGATTAACC--A-ACAATA-TTTGCA-CCC
1 AGCTCTAGTTGGATAAACCGAAGATAATATTTTG-AGCCC
* * * * *
36138595 CG-TGCTAGTCGGATAAACCGACGATAGTAATTGTGAGCCC
1 AGCT-CTAGTTGGATAAACCGAAGATAAT-ATTTTGAGCCC
36138635 AGCTCTAGTTGGATAAACC
1 AGCTCTAGTTGGATAAACC
36138654 AACGATGTTT
Statistics
Matches: 218, Mismatches: 31, Indels: 65
0.69 0.10 0.21
Matches are distributed among these distances:
34 4 0.02
35 79 0.36
36 7 0.03
37 14 0.06
38 17 0.08
39 9 0.04
40 84 0.39
41 4 0.02
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (39 bp):
AGCTCTAGTTGGATAAACCGAAGATAATATTTTGAGCCC
Found at i:36138453 original size:35 final size:35
Alignment explanation
Indices: 36138339--36138678 Score: 206
Period size: 35 Copynumber: 9.1 Consensus size: 35
36138329 GAGTCTAGCT
36138339 CTAGTTGGATTAACCAACAATATTTGTACCCAGTG
1 CTAGTTGGATTAACCAACAATATTTGTACCCAGTG
* *
36138374 CTAGTTGGATGAACCGAAGATAATGATTT-TGAGCCCAGCT-
1 CTAGTTGGATTAACC--A-ACAAT-ATTTGT-A-CCCAG-TG
*
36138414 CTAGTTGGATTAACTAACAATATTTGTACCCAGTG
1 CTAGTTGGATTAACCAACAATATTTGTACCCAGTG
* *
36138449 CTAGTTGGATGAACCGAAGATAATGATTT-TGAGCCCAGCT-
1 CTAGTTGGATTAACC--A-ACAAT-ATTTGT-A-CCCAG-TG
* *
36138489 CTAGTCGGATTAACCAACAATATTTGCACCCAGTG
1 CTAGTTGGATTAACCAACAATATTTGTACCCAGTG
* * * * *
36138524 CTAGTCGGATAAATCGACGATAATGATTGTGAGCCCAGCT-
1 CTAGTTGGATTAACCAACAAT-AT--TTGT-A-CCCAG-TG
* *
36138564 CTAGTTGGATTAACCAACAATATTTGCACCCCGTG
1 CTAGTTGGATTAACCAACAATATTTGTACCCAGTG
* * * *
36138599 CTAGTCGGATAAACCGACGATAGTAATTGTGAGCCCAGCT-
1 CTAGTTGGATTAACCAAC-A-A-TATTTGT-A-CCCAG-TG
* * * *
36138639 CTAGTTGGATAAACCAACGATGTTTGCACCCAGTG
1 CTAGTTGGATTAACCAACAATATTTGTACCCAGTG
36138674 CTAGT
1 CTAGT
36138679 CGAGTGTACC
Statistics
Matches: 237, Mismatches: 36, Indels: 64
0.70 0.11 0.19
Matches are distributed among these distances:
34 4 0.02
35 83 0.35
36 15 0.06
37 19 0.08
38 21 0.09
39 14 0.06
40 77 0.32
41 4 0.02
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (35 bp):
CTAGTTGGATTAACCAACAATATTTGTACCCAGTG
Found at i:36138732 original size:75 final size:75
Alignment explanation
Indices: 36138298--36138767 Score: 564
Period size: 75 Copynumber: 6.3 Consensus size: 75
36138288 TGCGCCTAGC
* * * * ** * *
36138298 GCTAATCGGATTAACCGACAAAAATGAAAGTGAGTCTAGCTCTAGTTGGATTAACCAACAATATT
1 GCTAGTCGGATGAACCGACGATAATGATTGTGAGCCCAGCTCTAGTTGGATTAACCAACAATATT
*
36138363 TGTACCCAGT
66 TGCACCCAGT
* * * *
36138373 GCTAGTTGGATGAACCGAAGATAATGATTTTGAGCCCAGCTCTAGTTGGATTAACTAACAATATT
1 GCTAGTCGGATGAACCGACGATAATGATTGTGAGCCCAGCTCTAGTTGGATTAACCAACAATATT
*
36138438 TGTACCCAGT
66 TGCACCCAGT
* * * *
36138448 GCTAGTTGGATGAACCGAAGATAATGATTTTGAGCCCAGCTCTAGTCGGATTAACCAACAATATT
1 GCTAGTCGGATGAACCGACGATAATGATTGTGAGCCCAGCTCTAGTTGGATTAACCAACAATATT
36138513 TGCACCCAGT
66 TGCACCCAGT
* *
36138523 GCTAGTCGGATAAATCGACGATAATGATTGTGAGCCCAGCTCTAGTTGGATTAACCAACAATATT
1 GCTAGTCGGATGAACCGACGATAATGATTGTGAGCCCAGCTCTAGTTGGATTAACCAACAATATT
*
36138588 TGCACCCCGT
66 TGCACCCAGT
* * * * * *
36138598 GCTAGTCGGATAAACCGACGATAGTAATTGTGAGCCCAGCTCTAGTTGGATAAACCAACGATGTT
1 GCTAGTCGGATGAACCGACGATAATGATTGTGAGCCCAGCTCTAGTTGGATTAACCAACAATATT
36138663 TGCACCCAGT
66 TGCACCCAGT
* * * * * ** *
36138673 GCTAGTC-GAGTGTACCGACGACAGTAATTGTGAGCCCAGCTCTAGTTGGATGAACCAACGGTAA
1 GCTAGTCGGA-TGAACCGACGATAATGATTGTGAGCCCAGCTCTAGTTGGATTAACCAACAATAT
* * *
36138737 TTACGCCCAGC
65 TTGCACCCAGT
* *
36138748 GCTAGTCGGATAAATCGACG
1 GCTAGTCGGATGAACCGACG
36138768 GTTGTACAAG
Statistics
Matches: 351, Mismatches: 42, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
74 2 0.01
75 347 0.99
76 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (75 bp):
GCTAGTCGGATGAACCGACGATAATGATTGTGAGCCCAGCTCTAGTTGGATTAACCAACAATATT
TGCACCCAGT
Found at i:36141834 original size:25 final size:25
Alignment explanation
Indices: 36141804--36141853 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
36141794 TTTTCGGACT
36141804 GTTAGTGATGAATTATGGAATAAAA
1 GTTAGTGATGAATTATGGAATAAAA
36141829 GTTAGTGATGAATTATGGAATAAAA
1 GTTAGTGATGAATTATGGAATAAAA
36141854 TAATGTTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.00, G:0.24, T:0.32
Consensus pattern (25 bp):
GTTAGTGATGAATTATGGAATAAAA
Found at i:36145841 original size:6 final size:6
Alignment explanation
Indices: 36145830--36145881 Score: 61
Period size: 6 Copynumber: 8.7 Consensus size: 6
36145820 TTCTTTCTAG
* * *
36145830 GCTTGA GCTTGA GCTTGA GCTTGA GCTTGG GCTT-A GGCTTGG GCTTGG
1 GCTTGA GCTTGA GCTTGA GCTTGA GCTTGA GCTTGA -GCTTGA GCTTGA
36145878 GCTT
1 GCTT
36145882 TAGTGAAGTC
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.10, C:0.17, G:0.38, T:0.35
Consensus pattern (6 bp):
GCTTGA
Found at i:36145853 original size:18 final size:18
Alignment explanation
Indices: 36145827--36145881 Score: 76
Period size: 18 Copynumber: 3.1 Consensus size: 18
36145817 AACTTCTTTC
*
36145827 TAGGCTTGAGCTTGAGCT
1 TAGGCTTGAGCTTGGGCT
36145845 T-GAGCTTGAGCTTGGGCT
1 TAG-GCTTGAGCTTGGGCT
*
36145863 TAGGCTTGGGCTTGGGCT
1 TAGGCTTGAGCTTGGGCT
36145881 T
1 T
36145882 TAGTGAAGTC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
17 1 0.03
18 31 0.94
19 1 0.03
ACGTcount: A:0.11, C:0.16, G:0.38, T:0.35
Consensus pattern (18 bp):
TAGGCTTGAGCTTGGGCT
Found at i:36157730 original size:19 final size:19
Alignment explanation
Indices: 36157684--36157731 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
36157674 GTATATATTT
36157684 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
* *
36157702 TAAATCTTATTTGGGTAGA
1 TAAATTTTATTTAGGTAGA
*
36157721 TAAGTTTTATT
1 TAAATTTTATT
36157732 CATATTCTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:36157793 original size:43 final size:43
Alignment explanation
Indices: 36157745--36157837 Score: 143
Period size: 43 Copynumber: 2.2 Consensus size: 43
36157735 ATTCTAGAAA
*
36157745 TATTTT-TATTTTGTCTTTTAGTAGTTTACTAGAATAAGGGAAC
1 TATTTTCT-TTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
* *
36157788 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAAC
1 TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
36157831 TATTTTC
1 TATTTTC
36157838 CCAATTAGAA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 45 0.98
44 1 0.02
ACGTcount: A:0.27, C:0.06, G:0.15, T:0.52
Consensus pattern (43 bp):
TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
Found at i:36181582 original size:68 final size:69
Alignment explanation
Indices: 36181463--36181629 Score: 178
Period size: 68 Copynumber: 2.4 Consensus size: 69
36181453 CTTTCCAAGG
* * * **
36181463 AAAATCAACACATATTGCG-GGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTT-
1 AAAATCAACTCATATTGCGAGAAG-TGAGTTGAACCTCAAGACACGCCGAGGTATTTTTAATTTA
36181526 T-TTT
65 TGTTT
** * *
36181530 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 -AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGACACGCCGAGGTATTTTTAATTTA
36181595 TGTTT
65 TGTTT
* ** *
36181600 TAAATTGACTCATATTGCGAGAGGTGAGTT
1 AAAATCAACTCATATTGCGAGAAGTGAGTT
36181630 AAGCCTTTTA
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
68 50 0.60
69 30 0.36
70 3 0.04
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.33
Consensus pattern (69 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGACACGCCGAGGTATTTTTAATTTAT
GTTT
Found at i:36181838 original size:76 final size:72
Alignment explanation
Indices: 36181639--36181925 Score: 405
Period size: 76 Copynumber: 3.9 Consensus size: 72
36181629 TAAGCCTTTT
* * *
36181639 AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTC-GGACACGCTGAGG
1 AATTTCTGTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
36181703 TAATTTC
66 TAATTTC
* *
36181710 GATTTCTGTTTTTAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTGTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
36181775 TAATTTC
66 TAATTTC
*
36181782 AATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
1 AATTTCTGTT-TT---TAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
* *
36181847 GAGGTATTTTTA
62 GAGGTA-ATTTC
* * * * *
36181859 AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGG
1 AATTTCTGTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
36181924 TA
66 TA
36181926 TTTTTAGTTT
Statistics
Matches: 194, Mismatches: 16, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
71 46 0.24
72 29 0.15
73 52 0.27
76 55 0.28
77 12 0.06
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (72 bp):
AATTTCTGTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
TAATTTC
Found at i:36181906 original size:149 final size:147
Alignment explanation
Indices: 36181653--36181925 Score: 440
Period size: 149 Copynumber: 1.8 Consensus size: 147
36181643 TTTGTTTTTC
* **
36181653 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTCGATTTCTG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTAAATTTCTG
36181718 TTTTTAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
66 TTTTTAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
36181783 ATTTCTGTTGTTAAAAA
131 ATTTCTGTTGTTAAAAA
* *
36181800 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTA-ATTTAAATTTC
* * *
36181865 TGTTTTTCAAAA-TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTA
64 TGTTTTT-AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
36181926 TTTTTAGTTT
Statistics
Matches: 115, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
147 36 0.31
148 15 0.13
149 60 0.52
150 4 0.03
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (147 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTAAATTTCTG
TTTTTAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
ATTTCTGTTGTTAAAAA
Found at i:36182192 original size:69 final size:68
Alignment explanation
Indices: 36182028--36182194 Score: 201
Period size: 68 Copynumber: 2.4 Consensus size: 68
36182018 CTTTCCAAGG
* * **
36182028 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCCGAGGTATTTTTAATTTTT
36182093 TTC
66 TTC
* ** * *
36182096 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGGGGCACGCCGAGGTATTTTTAGTTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCCGAGGTATTTTTAATTT-T
36182161 GTTT-
65 -TTTC
* **
36182165 TAAATTGACTCATATTGCGAGAGGTGAGTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTT
36182195 AAGCCTTTTA
Statistics
Matches: 84, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
68 54 0.64
69 27 0.32
70 3 0.04
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (68 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCCGAGGTATTTTTAATTTTT
TTC
Found at i:36182224 original size:229 final size:226
Alignment explanation
Indices: 36181800--36182245 Score: 700
Period size: 229 Copynumber: 2.0 Consensus size: 226
36181790 TTGTTAAAAA
* *
36181800 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAAA--TT
* * * *
36181865 TGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTT
64 TGTTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGGGGCACGCCGAGGTATTTT
36181930 TAGTTTTAAAGTGACTCATACTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATC
129 TAGTTTTAAAGTGACTCATACTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATC
* *
36181995 AACTCATATTGCTAGAGGTGAGGCTTTCCAAGG
194 AACTCATATTGCGAGAAGTGAGGCTTTCCAAGG
*
36182028 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTT-AA-TT-
1 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAAATTTG
36182090 TTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGGGGCACGCCGAGGTATTTTTA
66 TTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGGGGCACGCCGAGGTA---TT-
* *
36182155 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAA
127 -TTTA-GTTTTAAAGTGACTCATACTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAA
36182220 AATCAACTCATATTGCGAGAAGTGAG
190 AATCAACTCATATTGCGAGAAGTGAG
36182246 TTGAACCTCG
Statistics
Matches: 201, Mismatches: 11, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
223 55 0.27
224 2 0.01
226 2 0.01
227 2 0.01
228 59 0.29
229 81 0.40
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (226 bp):
AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAAATTTG
TTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGGGGCACGCCGAGGTATTTTTA
GTTTTAAAGTGACTCATACTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAA
CTCATATTGCGAGAAGTGAGGCTTTCCAAGG
Found at i:36182307 original size:122 final size:123
Alignment explanation
Indices: 36182090--36182676 Score: 601
Period size: 122 Copynumber: 4.6 Consensus size: 123
36182080 ATTTTTAATT
*
36182090 TTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGGGGCACGCCGAGGTATTTTTA
1 TTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
36182155 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTT-TTAATTTTTG
66 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTATTAATTTTTG
*
36182212 TTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGGGGCACGCCGAGGTATTTTTA
1 TTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
* * * *
36182277 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTGAG-CTTCAAATTACACACTGTGG
66 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTT---ATT--A-ATTTTTG
** * * * * * * * *
36182340 TATTTT---TTTCAACTCATATTGCTAGAGGTGGGTTGAGCCTCAGGACACGCTGAGGTAATTTC
1 T-TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTT
* * ** * *
36182402 AATTTCTGTTGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTG
65 AGTTTATGTT-TT-----AAATTGACTCATATTGCGAG--A-G-G-TGAG--TTA--A-GC-CT-
*
36182467 AGGTATTTTTAAATTTTTG
112 ---TA-TTA---ATTTTTG
36182486 TTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
1 TTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
36182551 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTT-TTAATTTTTG
66 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTATTAATTTTTG
* * * *
36182608 TTTTTCAAAATCAACTCATATTGCTAGAGGGGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTA
1 TTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
36182673 GTTT
66 GTTT
36182677 TAAATTGACT
Statistics
Matches: 381, Mismatches: 48, Indels: 72
0.76 0.10 0.14
Matches are distributed among these distances:
121 3 0.01
122 179 0.47
125 4 0.01
126 53 0.14
127 4 0.01
128 5 0.01
129 4 0.01
131 2 0.01
132 19 0.05
133 1 0.00
134 1 0.00
135 3 0.01
136 1 0.00
137 8 0.02
138 1 0.00
139 2 0.01
140 1 0.00
141 1 0.00
142 18 0.05
144 2 0.01
145 5 0.01
146 7 0.02
147 2 0.01
148 55 0.14
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.36
Consensus pattern (123 bp):
TTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTATTAATTTTTG
Found at i:36182512 original size:73 final size:71
Alignment explanation
Indices: 36182348--36182596 Score: 277
Period size: 73 Copynumber: 3.5 Consensus size: 71
36182338 GGTATTTTTT
* * * * * *
36182348 TCAACTCATATTGCTAGAGGTGGGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTG
1 TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAATTTATGTT-
*
36182413 TTAAAAAAAA
65 TT---TAAAA
* *
36182423 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTTTGTT
1 TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTT-AATTTATGTT
36182488 TTTCAAAA
65 TTT-AAAA
* * * *
36182496 TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATG-TT
1 TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAATTTATGTTT
36182560 TT-AAA
66 TTAAAA
** * *
36182565 TTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TCAACTCATATTGCGAGAAGTGAGTTGAGCCT
36182597 TTTAATTTTT
Statistics
Matches: 154, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
69 31 0.20
71 4 0.03
72 6 0.04
73 54 0.35
75 50 0.32
76 9 0.06
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (71 bp):
TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAATTTATGTTT
TTAAAA
Found at i:36182735 original size:122 final size:124
Alignment explanation
Indices: 36182441--36182793 Score: 361
Period size: 122 Copynumber: 2.9 Consensus size: 124
36182431 TATTGCGAGA
*
36182441 AATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTTTGTTTTTCAAAATCAACTCATA
1 AATGAGTTGAGCCTCAGGACACGCTGAGGTA-ATTTAAATTTTTGTTTTTCAAAATCAACTCATA
*
36182506 TTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTTAAATTGACT
65 TTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTA---TT--TTTATGTTTTAAATTGACT
* * * * *
36182571 CAT-A-TT--G---C--GAGA-GGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCA
1 AATGAGTTGAGCCTCAGGACACGCTGAGGTAA---TTTAAATTTTTGTTTTTCAAAATCAACTCA
* * *
36182626 TATTGCTAGAGGGGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTA-GTTTTAAATTGACT
63 TATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTATGTTTTAAATTGACT
* * * *
36182687 AATGAGTTGAGCCTCAGGATACGCTGAGGTAATTTCAATTTCTG-TTTTCAAAATTCAACTTATA
1 AATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTAAATTTTTGTTTTTCAAAA-TCAACTCATA
* ** * *
36182751 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
65 TTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTT
36182794 CAATTTCTGT
Statistics
Matches: 184, Mismatches: 25, Indels: 35
0.75 0.10 0.14
Matches are distributed among these distances:
116 16 0.09
117 5 0.03
118 2 0.01
119 2 0.01
120 8 0.04
121 3 0.02
122 75 0.41
123 56 0.30
125 3 0.02
126 9 0.05
128 2 0.01
129 1 0.01
130 2 0.01
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (124 bp):
AATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTAAATTTTTGTTTTTCAAAATCAACTCATAT
TGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTATGTTTTAAATTGACT
Found at i:36182804 original size:72 final size:72
Alignment explanation
Indices: 36182687--36182956 Score: 290
Period size: 72 Copynumber: 3.6 Consensus size: 72
36182677 TAAATTGACT
* * *
36182687 AATGAGTTGAGCCTCAGGATACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTTATAT
1 AATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTCAAAAATCAACTTATAT
36182752 TGCGAGA
66 TGCGAGA
* *
36182759 AATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCAAAAAAAAAAATCAAC
1 AATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTC------AAAAATCAAC
36182824 TTATATTGCGAGA
60 TTATATTGCGAGA
** * *
36182837 GGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTTTTTAAAAAAAAAATCA
1 AATGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAATTTCTG-TTTT----CAAAAATCA
*
36182901 ACTCATATTGCGAGA
58 ACTTATATTGCGAGA
** *
36182916 GGTGAGTTGAACCTCAGGACACGCTGAGGTATTTTCAATTT
1 AATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
36182957 TCGTTTTTTT
Statistics
Matches: 169, Mismatches: 14, Indels: 25
0.81 0.07 0.12
Matches are distributed among these distances:
72 45 0.27
77 23 0.14
78 35 0.21
79 36 0.21
80 26 0.15
81 4 0.02
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.33
Consensus pattern (72 bp):
AATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTCAAAAATCAACTTATAT
TGCGAGA
Found at i:36182817 original size:396 final size:391
Alignment explanation
Indices: 36182028--36182950 Score: 1156
Period size: 396 Copynumber: 2.3 Consensus size: 391
36182018 CTTTCCAAGG
* *
36182028 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAA---TT
1 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAATTTTT
36182090 -TTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGGGGCACGCCGAGGTATTTTT
66 GTTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGGGGCACGCCGAGGTATTTTT
36182154 AGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCA
131 AGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCA
*
36182219 AAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGGGGCACGCCGAGGTATTTTTAGTTTATG
196 AAATCAACTCATATTGCGAGAAGGGAGTTGAACCTCGGGGCACGCCGAGGTA--TTTA-TTTATG
* * * * * **
36182284 TTTTAAATTGACTCATATTGCGAGAGGTGAGTTGAGCTTCAAATTACACACTGTGGTATTTTTTT
258 TTTTAAATTGACTAATATTGCCACAGGTGAGCTGAGCGT-AAATTACACACTGTGGTATTTAATT
* ** * *
36182349 CAACTCATATTGCTAGAGGTGGGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGT
322 CAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTGT
36182414 TAAAA
387 TAAAA
*
36182419 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTT-AATTTT
*
36182484 TGTTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTT
65 TGTTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGGGGCACGCCGAGGTATTTT
36182549 TAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
130 TAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
* * * *
36182614 AAAATCAACTCATATTGCTAGAGGGGAGTTGAGCCTCGGGGCACGCTGAGGTA-TT-TTTA-GTT
195 AAAATCAACTCATATTGCGAGAAGGGAGTTGAACCTCGGGGCACGCCGAGGTATTTATTTATGTT
* * * *
36182676 TTAAATTGACTAATGAGTTGAGCCTCAGGAT-ACGCTGAG-GT-AATTTCA-A-TTTCTGT-TTT
260 TTAAATTGACTAAT-A-TT--GCCACAGG-TGA-GCTGAGCGTAAATTACACACTGT-GGTATTT
* * *
36182735 CAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
318 ---AATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT
36182800 CTGTT-TTCAAAAAAA
380 CTGTTGTT----AAAA
* * * *
36182815 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTTAATT
* * * * * *
36182879 TCTGTTTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGCTGAG
63 TTTGTTTTT-----CAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGGGGCACGCCGAG
36182944 GTATTTT
123 GTATTTT
36182951 CAATTTTCGT
Statistics
Matches: 465, Mismatches: 40, Indels: 43
0.85 0.07 0.08
Matches are distributed among these distances:
390 21 0.05
391 63 0.14
392 12 0.03
393 59 0.13
394 7 0.02
395 10 0.02
396 213 0.46
397 12 0.03
398 16 0.03
402 52 0.11
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.35
Consensus pattern (391 bp):
AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAATTTTT
GTTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGGGGCACGCCGAGGTATTTTT
AGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCA
AAATCAACTCATATTGCGAGAAGGGAGTTGAACCTCGGGGCACGCCGAGGTATTTATTTATGTTT
TAAATTGACTAATATTGCCACAGGTGAGCTGAGCGTAAATTACACACTGTGGTATTTAATTCAAC
TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAA
A
Found at i:36183029 original size:89 final size:90
Alignment explanation
Indices: 36182890--36183054 Score: 287
Period size: 89 Copynumber: 1.8 Consensus size: 90
36182880 CTGTTTTTAA
* *
36182890 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGCTGAGGTA-TTTTCAA
1 AAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGACACGCTGAGGTATTTTTAAA
36182954 TTTTCGTTTTTTTAATTTATGTTTC
66 TTTTCGTTTTTTTAATTTATGTTTC
*
36182979 AAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAA
1 AAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGACACGCTGAGGTATTTTTAAA
*
36183044 TTTTTGTTTTT
66 TTTTCGTTTTT
36183055 CAAAATCAAC
Statistics
Matches: 71, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
89 55 0.77
90 16 0.23
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.36
Consensus pattern (90 bp):
AAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGACACGCTGAGGTATTTTTAAA
TTTTCGTTTTTTTAATTTATGTTTC
Found at i:36183082 original size:73 final size:70
Alignment explanation
Indices: 36182983--36183160 Score: 241
Period size: 73 Copynumber: 2.5 Consensus size: 70
36182973 TGTTTCAAAA
* *
36182983 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTTT-AATTTA
36183048 TGTTTTT
65 TG-TTTT
* * *
36183055 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 -AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTTTAATTTA
36183120 TGTTTT
65 TGTTTT
** * *
36183126 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
36183161 TTTAATTTTT
Statistics
Matches: 96, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
69 31 0.32
71 4 0.04
72 6 0.06
73 55 0.57
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTTTAATTTAT
GTTTT
Found at i:36183110 original size:162 final size:162
Alignment explanation
Indices: 36182811--36183112 Score: 419
Period size: 162 Copynumber: 1.8 Consensus size: 162
36182801 TGTTTTCAAA
* * * *
36182811 AAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCA
1 AAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGG-T-ACACGCTGAGGTATTTTAA
* *
36182876 ATTTCTGTTTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGCT
64 ATTTCTGTTTTT----AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGACACGCC
36182941 GAGGTATTTTCAATTTTCGTTTTTTTAATTTATGTTTC
125 GAGGTATTTTCAATTTTCGTTTTTTTAATTTATGTTTC
36182979 AAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG-ACACGCTGAGGTATTTTTAA
1 AAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGTACACGCTGAGGTA-TTTTAA
* * * * *
36183043 ATTTTTGTTTTT-CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGG
64 ATTTCTGTTTTTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGACACGCCGAGG
36183107 TATTTT
129 TATTTT
36183113 TAGTTTATGT
Statistics
Matches: 121, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
162 52 0.43
166 12 0.10
167 16 0.13
168 39 0.32
169 2 0.02
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.33
Consensus pattern (162 bp):
AAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGTACACGCTGAGGTATTTTAAAT
TTCTGTTTTTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGACACGCCGAGGTA
TTTTCAATTTTCGTTTTTTTAATTTATGTTTC
Found at i:36183408 original size:199 final size:193
Alignment explanation
Indices: 36182983--36183511 Score: 661
Period size: 199 Copynumber: 2.7 Consensus size: 193
36182973 TGTTTCAAAA
* * * *
36182983 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTA-AATTT
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTA-TTTTACAATTT
** * * * *
36183047 TTGTTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTT
65 TTGTTTTT--ATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTT
* * ** **
36183112 TTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTT
128 TCAATTTATGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTACTTTTT
36183177 C
193 C
* * * *
36183178 AAAATCAACTCATATTGCTAGAGGGGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTACACACTG
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTACA-ATTT
* * * *
36183243 TGGTATTTT-TTTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTT
65 TTGT-TTTTATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
* *
36183307 CAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAA-CCTTTTAATTTCTAC
129 CAATTTATGTTT-T--A-AATCAACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTAATTT-TAC
36183371 TTTTTC
188 TTTTTC
*
36183377 AAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTT-CAATTTT
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTACAATTTT
*
36183441 TGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGCTGAGGTATTTT
66 TGT-TTTT-ATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
36183506 CAATTT
129 CAATTT
36183512 TCGTTTTTTT
Statistics
Matches: 287, Mismatches: 36, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
194 60 0.21
195 50 0.17
196 5 0.02
197 14 0.05
198 38 0.13
199 120 0.42
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (193 bp):
AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTACAATTTT
TGTTTTTATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
ATTTATGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTACTTTTTC
Found at i:36183466 original size:72 final size:73
Alignment explanation
Indices: 36183385--36183526 Score: 223
Period size: 72 Copynumber: 2.0 Consensus size: 73
36183375 TCAAAATCAG
* * * *
36183385 CTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTG-TGTTTT
1 CTCATATTGCAAGAGGTGAGTTGAACCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
36183449 AATTTCAA
66 AATTTCAA
* *
36183457 CTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTTTTTT
1 CTCATATTGCAAGAGGTGAGTTGAACCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
36183522 AATTT
66 AATTT
36183527 ATGTTTCAAA
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
72 53 0.84
73 10 0.16
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.39
Consensus pattern (73 bp):
CTCATATTGCAAGAGGTGAGTTGAACCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
AATTTCAA
Found at i:36183639 original size:71 final size:72
Alignment explanation
Indices: 36183522--36183746 Score: 254
Period size: 73 Copynumber: 3.1 Consensus size: 72
36183512 TCGTTTTTTT
** * *
36183522 AATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA-AGACGCTGAG
1 AATTTATG-TTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAG
36183586 GTAATTTC
65 GTAATTTC
* **
36183594 AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTATGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAG
** *
36183659 GTGGTTTT
65 GTAATTTC
* * * **
36183667 AATTTATGTTCATCAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACACGCTG
1 AATTTATGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-T--CAGACACGCTG
*
36183732 AGGTATTTTC
63 AGGTAATTTC
36183742 AATTT
1 AATTT
36183747 CTGGTTTTCA
Statistics
Matches: 127, Mismatches: 21, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
71 40 0.31
72 7 0.06
73 58 0.46
74 1 0.01
75 20 0.16
76 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (72 bp):
AATTTATGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGG
TAATTTC
Found at i:36183683 original size:73 final size:71
Alignment explanation
Indices: 36183518--36183717 Score: 256
Period size: 73 Copynumber: 2.8 Consensus size: 71
36183508 ATTTTCGTTT
** * *
36183518 TTTTAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACGCT
1 TTTTAATTTATG-TTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACGCT
36183583 GAGGTAA
65 GAGGTAA
* * **
36183590 TTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTTAATTTATGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA--ACACGC
**
36183655 TGAGGTGG
64 TGAGGTAA
* * *
36183663 TTTTAATTTATGTTCATCAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCT
1 TTTTAATTTATGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
36183718 TGGCTCACAC
Statistics
Matches: 109, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
71 40 0.37
72 10 0.09
73 59 0.54
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.33
Consensus pattern (71 bp):
TTTTAATTTATGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACGCTG
AGGTAA
Found at i:36183756 original size:14 final size:14
Alignment explanation
Indices: 36183737--36183771 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
36183727 CGCTGAGGTA
36183737 TTTTCAATTTCTGG
1 TTTTCAATTTCTGG
*
36183751 TTTTCAATTTCTGT
1 TTTTCAATTTCTGG
36183765 TTTTCAA
1 TTTTCAA
36183772 AAATCGACTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.17, C:0.14, G:0.09, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTGG
Found at i:36183800 original size:162 final size:161
Alignment explanation
Indices: 36183590--36183989 Score: 557
Period size: 162 Copynumber: 2.4 Consensus size: 161
36183580 GCTGAGGTAA
* *
36183590 TTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
** * * *
36183655 TGAGGTGGTTTTAATTTATGTTCATCAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCTTG
66 TGAGGTAATTTCAATTTATGTTCATCAAAAATTAACTCATATTGCAAGAGGTGAGTTGAGCCTCG
36183720 GCTCACACGCTGAGGTATTTTCAATTTCTGGT
131 GCTCACACGCTGAGGTATTTTCAATTTCT-GT
* * * *
36183752 TTTCAATTTCTGTTTTTCAAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCTCGGGACACGC
1 TTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
* ** **
36183817 TGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGTGAGAGGTGAGTTGAGCCTCG
66 TGAGGTAATTTCAATTTATGTTCATCAAAAATTAACTCATATTGCAAGAGGTGAGTTGAGCCTCG
* *
36183882 GCTCACATGCTGAGGTCTTTTCAATTTCTGT
131 GCTCACACGCTGAGGTATTTTCAATTTCTGT
** *
36183913 TCTTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGA
1 T-TTCAATTTCTGTT--T--ATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
36183978 CACGCTGAGGTA
61 CACGCTGAGGTA
36183990 TTTTTAGTTT
Statistics
Matches: 209, Mismatches: 24, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
161 3 0.01
162 155 0.74
164 1 0.00
166 50 0.24
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (161 bp):
TTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
TGAGGTAATTTCAATTTATGTTCATCAAAAATTAACTCATATTGCAAGAGGTGAGTTGAGCCTCG
GCTCACACGCTGAGGTATTTTCAATTTCTGT
Done.