Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 107 of 235
Found at i:36820938 original size:16 final size:15
Alignment explanation
Indices: 36820916--36820954 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
36820906 AGCTACCATG
36820916 AAAAGAAAAATAGAA
1 AAAAGAAAAATAGAA
*
36820931 AGAAAGAAAAAATAGGA
1 A-AAAG-AAAAATAGAA
36820948 AAAAGAA
1 AAAAGAA
36820955 TAATCCGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 3 0.14
16 8 0.38
17 10 0.48
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (15 bp):
AAAAGAAAAATAGAA
Found at i:36820941 original size:17 final size:16
Alignment explanation
Indices: 36820916--36820954 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
36820906 AGCTACCATG
36820916 AAAAG-AAAAATAGAA
1 AAAAGAAAAAATAGAA
*
36820931 AGAAAGAAAAAATAGGA
1 A-AAAGAAAAAATAGAA
36820948 AAAAGAA
1 AAAAGAA
36820955 TAATCCGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 10 0.48
17 10 0.48
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (16 bp):
AAAAGAAAAAATAGAA
Found at i:36824407 original size:42 final size:42
Alignment explanation
Indices: 36824346--36824455 Score: 130
Period size: 42 Copynumber: 2.6 Consensus size: 42
36824336 GTGTTTCAAG
* * *
36824346 TCAGTGAGTTACACAGCCTGGCACACCGCCGTGTGTGGTAAC
1 TCAGTGAGTTACACGGCCTGGCACACCGCCGTGTGTAGCAAC
* * **
36824388 TTAGTGAGCTACACGGCCTGGCACATGGCCGTGTGTAGCAAC
1 TCAGTGAGTTACACGGCCTGGCACACCGCCGTGTGTAGCAAC
* * *
36824430 TCAATGAGTTACATGGCCTAGCACAC
1 TCAGTGAGTTACACGGCCTGGCACAC
36824456 GGTCTGGCAC
Statistics
Matches: 55, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (42 bp):
TCAGTGAGTTACACGGCCTGGCACACCGCCGTGTGTAGCAAC
Found at i:36835231 original size:131 final size:131
Alignment explanation
Indices: 36834997--36835235 Score: 309
Period size: 131 Copynumber: 1.8 Consensus size: 131
36834987 TATCGATTAC
* * * * ** **
36834997 TTTAATATCATGAACACCTTTATTTGAGTTAACTGATTTAAGATCGCTACTCCACATAGTTTGCT
1 TTTAAGATCATGAACACCTTTATTTGAGTTAACTGATTTAAGATCACTACTCCAAACAACTCACT
* **
36835062 GATTTAAGCTCGCAGTTAATATCATTAAAGTTCACTGATTTAAGATCGCAACCTAAGTTCATTTG
66 GATTTAAGATCGCAACTAATATCATTAAAGTTCACTGATTTAAGATCGCAACCTAAGTTCATTTG
36835127 A
131 A
* ** *
36835128 TTTAAGATCATGAACA-ATCTTATTTGAGTTAGTTGATTTAAGATCACTACTCCAAACAACTCAT
1 TTTAAGATCATGAACACCT-TTATTTGAGTTAACTGATTTAAGATCACTACTCCAAACAACTCAC
* *
36835192 TGATTTAAGATCGCAACTGATATCATTAAGGTTCACTGATTTAA
65 TGATTTAAGATCGCAACTAATATCATTAAAGTTCACTGATTTAA
36835236 TATCACAGTT
Statistics
Matches: 90, Mismatches: 17, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
130 1 0.01
131 89 0.99
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (131 bp):
TTTAAGATCATGAACACCTTTATTTGAGTTAACTGATTTAAGATCACTACTCCAAACAACTCACT
GATTTAAGATCGCAACTAATATCATTAAAGTTCACTGATTTAAGATCGCAACCTAAGTTCATTTG
A
Found at i:36835249 original size:36 final size:36
Alignment explanation
Indices: 36835209--36835278 Score: 113
Period size: 36 Copynumber: 1.9 Consensus size: 36
36835199 AGATCGCAAC
*
36835209 TGATATCATTAAGGTTCACTGATTTAATATCACAGT
1 TGATATCATTAAGGTTCACTGATTTAAAATCACAGT
**
36835245 TGATATCATTAAGGTTCGTTGATTTAAAATCACA
1 TGATATCATTAAGGTTCACTGATTTAAAATCACA
36835279 ACCTAACTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.39
Consensus pattern (36 bp):
TGATATCATTAAGGTTCACTGATTTAAAATCACAGT
Found at i:36835301 original size:167 final size:167
Alignment explanation
Indices: 36835060--36835409 Score: 454
Period size: 167 Copynumber: 2.1 Consensus size: 167
36835050 ACATAGTTTG
* * * * * *
36835060 CTGATTTAAGCTCGCAGTTAATATCATTAAAGTTCACTGATTTAAGATCGCAACCTAAGTTCATT
1 CTGATTTAAGATCACAGTTAATATCATTAAAGTTCACTGATTTAAAATCACAACCTAACTTCATC
* * *
36835125 TGATTTAAGATCATGAACAATCTTATTTGAGTTAGTTGATTTAAG-ATC-ACTACTCCAAACAAC
66 AGATTTAAGATCACGAACAATCTTATTTGAGTTAATTGATTT-AGTATCGA-TACTCCAAACAAC
36835188 TCATTGATTTAAGATCGCAACTGATATCATTAAGGTTCA
129 TCATTGATTTAAGATCGCAACTGATATCATTAAGGTTCA
* * * **
36835227 CTGATTTAATATCACAGTTGATATCATTAAGGTTCGTTGATTTAAAATCACAACCTAACTTCATA
1 CTGATTTAAGATCACAGTTAATATCATTAAAGTTCACTGATTTAAAATCACAACCTAACTTCAT-
*
36835292 CAG-TTTAAGATCACGAACAATTTTATTTGAGTTAATTGATTTAGTATCGATACTCCAAACAACT
65 CAGATTTAAGATCACGAACAATCTTATTTGAGTTAATTGATTTAGTATCGATACTCCAAACAACT
* * * * * *
36835356 CGTTGATTTAATATTGCAGCTGATATCATTAAGTTTTA
130 CATTGATTTAAGATCGCAACTGATATCATTAAGGTTCA
*
36835394 TTGATTTAAGATCACA
1 CTGATTTAAGATCACA
36835410 ATCTAAGTTC
Statistics
Matches: 157, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
166 2 0.01
167 153 0.97
168 2 0.01
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (167 bp):
CTGATTTAAGATCACAGTTAATATCATTAAAGTTCACTGATTTAAAATCACAACCTAACTTCATC
AGATTTAAGATCACGAACAATCTTATTTGAGTTAATTGATTTAGTATCGATACTCCAAACAACTC
ATTGATTTAAGATCGCAACTGATATCATTAAGGTTCA
Found at i:36835398 original size:131 final size:131
Alignment explanation
Indices: 36835228--36835573 Score: 381
Period size: 131 Copynumber: 2.6 Consensus size: 131
36835218 TAAGGTTCAC
* * * *
36835228 TGATTTAATATCACAGTTGATATCATTAAGGTTCGTTGATTTAAAATCACAACCTAACTTCATAC
1 TGATTTAATATCGCAGCTGATATCATTAAGATTCGTTGATTTAAGATCACAACCTAACTTCAT-C
*
36835293 AG-TTTAAGATCACGAACAATTTTATTTGAGTTAATTGATTT-AGTATCGATACTCCAAACAACT
65 AGATTTAAGATCACGAACAATCTTATTTGAGTTAATTGATTTAAG-ATCGATACTCCAAACAACT
36835356 CGT
129 CGT
* * ** * * **
36835359 TGATTTAATATTGCAGCTGATATCATTAAGTTTTATTGATTTAAGATCACAATCTAAGTTCATTT
1 TGATTTAATATCGCAGCTGATATCATTAAGATTCGTTGATTTAAGATCACAACCTAACTTCATCA
* * * * * * *
36835424 GATTTAAGATCATGAACAATCTTATTTGAGTTAGTTGATTTAAGATTGCTACTCCAGACAGCTCT
66 GATTTAAGATCACGAACAATCTTATTTGAGTTAATTGATTTAAGATCGATACTCCAAACAACTCG
36835489 T
131 T
* * * * * * * **
36835490 TGATTTAAGATCGGAGCTAATATCATTAAGATTCGCTGATCTAAGATCACAACCTAAGTTTATTT
1 TGATTTAATATCGCAGCTGATATCATTAAGATTCGTTGATTTAAGATCACAACCTAACTTCATCA
* *
36835555 GATTTAATATCATGAACAA
66 GATTTAAGATCACGAACAA
36835574 GCTCATCTAT
Statistics
Matches: 182, Mismatches: 31, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
130 1 0.01
131 179 0.98
132 2 0.01
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (131 bp):
TGATTTAATATCGCAGCTGATATCATTAAGATTCGTTGATTTAAGATCACAACCTAACTTCATCA
GATTTAAGATCACGAACAATCTTATTTGAGTTAATTGATTTAAGATCGATACTCCAAACAACTCG
T
Found at i:36837943 original size:20 final size:21
Alignment explanation
Indices: 36837918--36837959 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
36837908 AATATGCTGT
*
36837918 AAAATGAAAG-TTTTTGATAG
1 AAAATGAAAGATTATTGATAG
36837938 AAAATGAAAGATTATTGATAG
1 AAAATGAAAGATTATTGATAG
36837959 A
1 A
36837960 TAAACCACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31
Consensus pattern (21 bp):
AAAATGAAAGATTATTGATAG
Found at i:36838680 original size:33 final size:33
Alignment explanation
Indices: 36838643--36838756 Score: 108
Period size: 33 Copynumber: 3.5 Consensus size: 33
36838633 TACCCAAATG
* *
36838643 GTACAACTTGAAAAGGTTATGTATACTTTGTGT
1 GTACCACTTGAAAAGGTTAAGTATACTTTGTGT
* * *
36838676 GTA-CATTTGGAAAGGTTAGGTATACTTTGTGT
1 GTACCACTTGAAAAGGTTAAGTATACTTTGTGT
* **
36838708 ATACCA-TATGAAAA-GAAAAGTTATACTTTGTGT
1 GTACCACT-TGAAAAGGTTAAG-TATACTTTGTGT
*
36838741 GTACCACTTGGAAAGG
1 GTACCACTTGAAAAGG
36838757 AATGTACACC
Statistics
Matches: 65, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
32 31 0.48
33 32 0.49
34 2 0.03
ACGTcount: A:0.32, C:0.10, G:0.23, T:0.35
Consensus pattern (33 bp):
GTACCACTTGAAAAGGTTAAGTATACTTTGTGT
Found at i:36838691 original size:32 final size:33
Alignment explanation
Indices: 36838654--36838756 Score: 111
Period size: 32 Copynumber: 3.2 Consensus size: 33
36838644 TACAACTTGA
*
36838654 AAAGGTTATGTATACTTTGTGTGTA-CATTTGG
1 AAAGGTTAAGTATACTTTGTGTGTACCATTTGG
* * *
36838686 AAAGGTTAGGTATACTTTGTGTATACCATAT-G
1 AAAGGTTAAGTATACTTTGTGTGTACCATTTGG
* ** *
36838718 AAAAGAAAAGTTATACTTTGTGTGTACCACTTGG
1 AAAGGTTAAG-TATACTTTGTGTGTACCATTTGG
36838752 AAAGG
1 AAAGG
36838757 AATGTACACC
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
32 30 0.53
33 22 0.39
34 5 0.09
ACGTcount: A:0.32, C:0.09, G:0.23, T:0.36
Consensus pattern (33 bp):
AAAGGTTAAGTATACTTTGTGTGTACCATTTGG
Found at i:36849769 original size:3 final size:3
Alignment explanation
Indices: 36849761--36849808 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
36849751 ATTAACCCAG
36849761 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
36849809 TGAAAATTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:36850134 original size:19 final size:20
Alignment explanation
Indices: 36850110--36850184 Score: 52
Period size: 19 Copynumber: 4.0 Consensus size: 20
36850100 ATCACTAAAT
36850110 TAATTTTAAAAAAGAATTA-
1 TAATTTTAAAAAAGAATTAC
* *
36850129 TAA-TTTAATTAAA-AATTAT
1 TAATTTTAA-AAAAGAATTAC
* **
36850148 TAA-TTTAAATAATTA-TAC
1 TAATTTTAAAAAAGAATTAC
*
36850166 TAATTTTAAAATAGAATTA
1 TAATTTTAAAAAAGAATTA
36850185 TTATTTAGAT
Statistics
Matches: 42, Mismatches: 9, Indels: 9
0.70 0.15 0.15
Matches are distributed among these distances:
18 17 0.40
19 23 0.55
20 2 0.05
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.43
Consensus pattern (20 bp):
TAATTTTAAAAAAGAATTAC
Found at i:36852382 original size:17 final size:19
Alignment explanation
Indices: 36852357--36852393 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
36852347 AAACAATTAA
36852357 TTAATATT-GGAAATAAAT
1 TTAATATTGGGAAATAAAT
36852375 TTAA-ATTGGGAAATAAAT
1 TTAATATTGGGAAATAAAT
36852393 T
1 T
36852394 CGGATAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.38
Consensus pattern (19 bp):
TTAATATTGGGAAATAAAT
Found at i:36854516 original size:24 final size:24
Alignment explanation
Indices: 36854467--36854542 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 24
36854457 TATATAACGA
* * *
36854467 GAAGTTC-ATAAGAGCCATAATTGG
1 GAAGTTCAAAAAGAACCAT-ATCGG
* * *
36854491 GAAGTTCACAAAGAACCTTGTCGG
1 GAAGTTCAAAAAGAACCATATCGG
*
36854515 GAAGTTCAAAAAGATCCATATCGG
1 GAAGTTCAAAAAGAACCATATCGG
36854539 GAAG
1 GAAG
36854543 CTCTGGATGG
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
24 34 0.83
25 7 0.17
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.21
Consensus pattern (24 bp):
GAAGTTCAAAAAGAACCATATCGG
Found at i:36862264 original size:17 final size:17
Alignment explanation
Indices: 36862244--36862281 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
36862234 AATTGTCAGG
36862244 AGTTATCACACTATCAC
1 AGTTATCACACTATCAC
36862261 AGTTATCACACTATCAC
1 AGTTATCACACTATCAC
36862278 AGTT
1 AGTT
36862282 CGTATATCGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.34, C:0.26, G:0.08, T:0.32
Consensus pattern (17 bp):
AGTTATCACACTATCAC
Found at i:36872319 original size:23 final size:24
Alignment explanation
Indices: 36872269--36872321 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
36872259 CTTGTAACGA
* *
36872269 GAAGCTCACACAGAGCCATTTCAG
1 GAAGCTCACAAAGAGCCATATCAG
*
36872293 GAAGCTCATAAAGAGCC-TATCAG
1 GAAGCTCACAAAGAGCCATATCAG
36872316 GAAGCT
1 GAAGCT
36872322 TATCTGAGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 11 0.42
24 15 0.58
ACGTcount: A:0.36, C:0.25, G:0.23, T:0.17
Consensus pattern (24 bp):
GAAGCTCACAAAGAGCCATATCAG
Found at i:36876614 original size:27 final size:27
Alignment explanation
Indices: 36876576--36876821 Score: 339
Period size: 27 Copynumber: 9.1 Consensus size: 27
36876566 GGTCATTATT
* * *
36876576 TGACCGTGATGCCCCTGTAGAGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* *
36876603 TGACTGTAATGCCCCTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
*
36876630 TGACCGTAATACCCCTATAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
36876657 TGACCGTAATACCCCTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* * *
36876684 TGACCGTAATACCCTTATAAGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* *
36876711 TGACCGTAACACCCTTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
*
36876738 TGAACGTAATACCCCTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* *
36876765 TGACTGTAATGCCCCTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* * *
36876792 TGACTGTAATACCCTTGTATGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
36876819 TGA
1 TGA
36876822 TAATTATGCC
Statistics
Matches: 197, Mismatches: 22, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 197 1.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (27 bp):
TGACCGTAATACCCCTGTAGGGTAAAA
Found at i:36889520 original size:4 final size:4
Alignment explanation
Indices: 36889511--36889544 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
36889501 TTGCTTGTAC
*
36889511 ATAA ATAA ATAA ATAAA ATGA ATAA ATAA ATAA A
1 ATAA ATAA ATAA AT-AA ATAA ATAA ATAA ATAA A
36889545 GGCTCAAGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:36890236 original size:12 final size:12
Alignment explanation
Indices: 36890221--36890246 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
36890211 AAAAAAAATC
36890221 TTATTTTATTAT
1 TTATTTTATTAT
36890233 TTATTTTATTAT
1 TTATTTTATTAT
36890245 TT
1 TT
36890247 TAATTTATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (12 bp):
TTATTTTATTAT
Found at i:36892989 original size:20 final size:21
Alignment explanation
Indices: 36892946--36892989 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
36892936 ACAGTTCACG
36892946 TATATTTCTAAAAATTAATACA
1 TATATTTCTAAAAA-TAATACA
* *
36892968 TATATTTTTAAAAA-AATTCA
1 TATATTTCTAAAAATAATACA
36892988 TA
1 TA
36892990 AAAACTTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
22 13 0.65
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (21 bp):
TATATTTCTAAAAATAATACA
Found at i:36893533 original size:18 final size:18
Alignment explanation
Indices: 36893512--36893571 Score: 52
Period size: 18 Copynumber: 3.3 Consensus size: 18
36893502 AATCATTTAC
36893512 ATTTTAATATTATTTTCA
1 ATTTTAATATTATTTTCA
*
36893530 ATTTTATAAATT-TTTT-A
1 ATTTTA-ATATTATTTTCA
* *
36893547 ATTCTTAATAATAATTTTCT
1 ATT-TTAAT-ATTATTTTCA
36893567 ATTTT
1 ATTTT
36893572 CTATAATTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 9
0.72 0.09 0.20
Matches are distributed among these distances:
17 5 0.15
18 15 0.45
19 10 0.30
20 3 0.09
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTTTAATATTATTTTCA
Found at i:36893571 original size:37 final size:37
Alignment explanation
Indices: 36893507--36893598 Score: 102
Period size: 37 Copynumber: 2.5 Consensus size: 37
36893497 TTTAAAATCA
*
36893507 TTTACATTTTAATATTATTTTCAATTTTATA-AATTT
1 TTTACATTTTAATATAATTTTCAATTTTATATAATTT
* *
36893543 TTTA-ATTCTTAATAATAATTTTCTATTTTCTATAATTT
1 TTTACATT-TTAAT-ATAATTTTCAATTTTATATAATTT
36893581 TTGTAC-TTTT-ATATAATT
1 TT-TACATTTTAATATAATT
36893599 ATTTAATGAT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
35 3 0.06
36 15 0.31
37 17 0.35
38 9 0.19
39 4 0.08
ACGTcount: A:0.32, C:0.07, G:0.01, T:0.61
Consensus pattern (37 bp):
TTTACATTTTAATATAATTTTCAATTTTATATAATTT
Found at i:36893700 original size:19 final size:18
Alignment explanation
Indices: 36893507--36893705 Score: 70
Period size: 19 Copynumber: 10.3 Consensus size: 18
36893497 TTTAAAATCA
* *
36893507 TTTACATTTTAATATTATT
1 TTTATATTTT-ATATAATT
*
36893526 TTCA-ATTTTATA-AATT
1 TTTATATTTTATATAATT
36893542 TTT-TAATTCTTA-ATAATAAT
1 TTTAT-ATT-TTATATAAT--T
* *
36893562 TTTCTATTTTCTATAATT
1 TTTATATTTTATATAATT
*
36893580 TTTGTACTTTTATATAATT
1 TTTATA-TTTTATATAATT
36893599 ATTTAATGATTTTAT-TAATT
1 -TTT-AT-ATTTTATATAATT
* *
36893619 TTTAAATATTTTCTATACCGTT
1 TTT--ATATTTTATATA--ATT
*
36893641 TTCTATAATTTT-TAAAATATT
1 TT-TAT-ATTTTAT-ATA-ATT
*
36893662 TTTATTATCTTT-TATTATT
1 TTTA-TAT-TTTATATAATT
36893681 TTGTATATTTTATATAATT
1 TT-TATATTTTATATAATT
*
36893700 TCTATA
1 TTTATA
36893706 AACACCATTT
Statistics
Matches: 141, Mismatches: 16, Indels: 47
0.69 0.08 0.23
Matches are distributed among these distances:
16 5 0.04
17 7 0.05
18 24 0.17
19 40 0.28
20 32 0.23
21 20 0.14
22 12 0.09
23 1 0.01
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (18 bp):
TTTATATTTTATATAATT
Found at i:36900687 original size:33 final size:33
Alignment explanation
Indices: 36900645--36900711 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
36900635 AAAAAGTATA
36900645 ATTATAAGCAAGTATATACCAATCGAGCATAAC
1 ATTATAAGCAAGTATATACCAATCGAGCATAAC
36900678 ATTATAAGCAAGTATATACCAATCGAGCATAAC
1 ATTATAAGCAAGTATATACCAATCGAGCATAAC
36900711 A
1 A
36900712 GATATAACTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.46, C:0.18, G:0.12, T:0.24
Consensus pattern (33 bp):
ATTATAAGCAAGTATATACCAATCGAGCATAAC
Found at i:36907438 original size:17 final size:18
Alignment explanation
Indices: 36907418--36907455 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
36907408 TTAAAAAACC
36907418 TAAAATA-ATATAAAAAT
1 TAAAATATATATAAAAAT
*
36907435 TAAAATATTATTTAAAAAT
1 TAAAATA-TATATAAAAAT
36907454 TA
1 TA
36907456 TTAAAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
19 11 0.61
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
TAAAATATATATAAAAAT
Found at i:36907585 original size:26 final size:25
Alignment explanation
Indices: 36907556--36907605 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
36907546 ATAATCTTTT
*
36907556 AAATA-ATATTATACTTTTATAAATTC
1 AAATACATA-TATAATTTTA-AAATTC
36907582 AAATACATATATAATTTTAAAATT
1 AAATACATATATAATTTTAAAATT
36907606 TTACAATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 5 0.23
26 14 0.64
27 3 0.14
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (25 bp):
AAATACATATATAATTTTAAAATTC
Found at i:36916605 original size:25 final size:25
Alignment explanation
Indices: 36916577--36916633 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 25
36916567 CCGTTATTTA
* *
36916577 GCTCTTATGAGCATCCTGTTATATG
1 GCTCTTATAAGCATCCTGATATATG
* * * *
36916602 GCTCTCATAAGCTTTCTGATATTTG
1 GCTCTTATAAGCATCCTGATATATG
36916627 GCTCTTA
1 GCTCTTA
36916634 CAAGTTTCCC
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.19, C:0.21, G:0.18, T:0.42
Consensus pattern (25 bp):
GCTCTTATAAGCATCCTGATATATG
Found at i:36916687 original size:25 final size:25
Alignment explanation
Indices: 36916659--36916722 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 25
36916649 ATGGCTCTCT
36916659 TGAGCTTCCCGTTATACAACTCACA
1 TGAGCTTCCCGTTATACAACTCACA
* * * *
36916684 TGAGCTTTCCGGTATACAGCTCATA
1 TGAGCTTCCCGTTATACAACTCACA
* *
36916709 TGAACTTCCTGTTA
1 TGAGCTTCCCGTTA
36916723 CATGGCTCGG
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.33
Consensus pattern (25 bp):
TGAGCTTCCCGTTATACAACTCACA
Found at i:36919604 original size:43 final size:43
Alignment explanation
Indices: 36919533--36919634 Score: 118
Period size: 43 Copynumber: 2.4 Consensus size: 43
36919523 GTGTTGATAT
* * * *
36919533 TATTGTGATATATTATATTTTAGAAATTTGATTCTTAAT-AGGA
1 TATTATGAGATATTATATCTTAGAAATTTGATTCCTAATGA-GA
* *
36919576 TATTATGAGATATTATCTCTTAGTAATTTGATTCCTAATGAGA
1 TATTATGAGATATTATATCTTAGAAATTTGATTCCTAATGAGA
36919619 TATTAT-AGAATATTAT
1 TATTATGAG-ATATTAT
36919635 TATAAGATAT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
42 2 0.04
43 48 0.94
44 1 0.02
ACGTcount: A:0.35, C:0.05, G:0.13, T:0.47
Consensus pattern (43 bp):
TATTATGAGATATTATATCTTAGAAATTTGATTCCTAATGAGA
Found at i:36920126 original size:6 final size:6
Alignment explanation
Indices: 36920117--36920159 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
36920107 TATTTCGTAG
* * *
36920117 TTTTAA TTTTAA TTTTAA CTTTAA CTTTAG TCTTTAA TTTTAA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA T-TTTAA TTTTAA
36920160 AATCCCCCTC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
6 27 0.84
7 5 0.16
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.60
Consensus pattern (6 bp):
TTTTAA
Found at i:36925203 original size:39 final size:40
Alignment explanation
Indices: 36925108--36925330 Score: 248
Period size: 39 Copynumber: 5.7 Consensus size: 40
36925098 TTGAATGATG
*
36925108 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
36925146 ATCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
36925187 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
36925226 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
36925265 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
36925304 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
36925331 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 15, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
39 90 0.56
40 59 0.37
41 10 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:36925302 original size:79 final size:81
Alignment explanation
Indices: 36925108--36925336 Score: 267
Period size: 79 Copynumber: 2.9 Consensus size: 81
36925098 TTGAATGATG
* * * *
36925108 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTAATATCCGGGCTAAGACCCGAAGGCAT
*
36925170 TTGTACGAGATACTAAT
65 TTGTACGAGATACTAAA
*
36925187 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT-TCTGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-ATTACTAATATCCGGGCTAAGACCCGAAGGCAT
* *
36925248 TTGTGCGAGTTACTAAA
65 TTGTACGAGATACTAAA
* * * *
36925265 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAATATCCGGGCTAAGACCCGAAGGCATT
*
36925329 TGAACGAG
66 TGTACGAG
36925337 GAGCTATATC
Statistics
Matches: 128, Mismatches: 14, Indels: 15
0.82 0.09 0.10
Matches are distributed among these distances:
78 46 0.36
79 53 0.41
80 28 0.22
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTACGAGATACTAAA
Found at i:36925352 original size:79 final size:77
Alignment explanation
Indices: 36925108--36925363 Score: 213
Period size: 79 Copynumber: 3.3 Consensus size: 77
36925098 TTGAATGATG
* * * *
36925108 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
*
36925169 TTTGTACGAGATACTAA
62 TTTGTACGAG-GACTAA
* * *
36925186 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTT
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTT
* *
36925250 GTGCGAGTTACTAAA
65 GTACGAG-GACT-AA
*
36925265 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
36925328 TTGAACGAGGAGCTATA
63 TTGTACGAGGA-CTA-A
* *
36925345 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
36925364 TACGTGATTT
Statistics
Matches: 150, Mismatches: 16, Indels: 22
0.80 0.09 0.12
Matches are distributed among these distances:
78 44 0.29
79 70 0.47
80 35 0.23
81 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (77 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
TACGAGGACTAA
Found at i:36926900 original size:15 final size:16
Alignment explanation
Indices: 36926874--36926908 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
36926864 TTGGAGTAAT
36926874 TCCTTACTCCCTATTC
1 TCCTTACTCCCTATTC
*
36926890 TCCTT-CTCCCTTTTC
1 TCCTTACTCCCTATTC
36926905 TCCT
1 TCCT
36926909 CTTCTAGGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.06, C:0.46, G:0.00, T:0.49
Consensus pattern (16 bp):
TCCTTACTCCCTATTC
Found at i:36942322 original size:26 final size:27
Alignment explanation
Indices: 36942293--36942568 Score: 268
Period size: 26 Copynumber: 10.4 Consensus size: 27
36942283 CCCCGATTTA
* *
36942293 TAAAATTATCTAAATACCCTCAG-TTG
1 TAAAATTACCGAAATACCCTCAGTTTG
*
36942319 TAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACCGAAATACCCTC-AGTTTG
* * *
36942346 TAAAATTACTGAAATACCC-CTGATTG
1 TAAAATTACCGAAATACCCTCAGTTTG
**
36942372 TAAAATTACCGAAATACTTTCAGTTTG
1 TAAAATTACCGAAATACCCTCAGTTTG
* * *
36942399 TAAAATAACCAAAATACCC-C-CTATTG
1 TAAAATTACCGAAATACCCTCAGT-TTG
36942425 TAAAATTACCGAAATACCCTC-GATTTG
1 TAAAATTACCGAAATACCCTCAG-TTTG
* *
36942452 TAAAATTATCGAAATATGCCT-AGTTTG
1 TAAAATTACCGAAATA-CCCTCAGTTTG
*
36942479 TAAAATTACCGAAATACCC-CTA-ATTG
1 TAAAATTACCGAAATACCCTC-AGTTTG
*
36942505 TAAAATTACTGAAATACCCCTCA--TTG
1 TAAAATTACCGAAATA-CCCTCAGTTTG
* *
36942531 TAAAATTATCGAAATACCCCCAGTTTG
1 TAAAATTACCGAAATACCCTCAGTTTG
36942558 TAAAATTACCG
1 TAAAATTACCG
36942569 TAACACCCCT
Statistics
Matches: 207, Mismatches: 29, Indels: 27
0.79 0.11 0.10
Matches are distributed among these distances:
25 7 0.03
26 97 0.47
27 97 0.47
28 6 0.03
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCTCAGTTTG
Found at i:36942347 original size:27 final size:27
Alignment explanation
Indices: 36942293--36942578 Score: 286
Period size: 27 Copynumber: 10.8 Consensus size: 27
36942283 CCCCGATTTA
* *
36942293 TAAAATTATCTAAATA-CCCTCAG-TTG
1 TAAAATTACCGAAATACCCCT-AGTTTG
*
36942319 TAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTACCGAAATACCCCTAGTTTG
* *
36942346 TAAAATTACTGAAATACCCCT-GATTG
1 TAAAATTACCGAAATACCCCTAGTTTG
**
36942372 TAAAATTACCGAAATA-CTTTCAGTTTG
1 TAAAATTACCGAAATACCCCT-AGTTTG
* *
36942399 TAAAATAACCAAAATACCCCCTA--TTG
1 TAAAATTACCGAAATA-CCCCTAGTTTG
*
36942425 TAAAATTACCGAAATA-CCCTCGATTTG
1 TAAAATTACCGAAATACCCCTAG-TTTG
* **
36942452 TAAAATTATCGAAATATGCCTAGTTTG
1 TAAAATTACCGAAATACCCCTAGTTTG
*
36942479 TAAAATTACCGAAATACCCCTA-ATTG
1 TAAAATTACCGAAATACCCCTAGTTTG
*
36942505 TAAAATTACTGAAATACCCCTCA--TTG
1 TAAAATTACCGAAATACCCCT-AGTTTG
* *
36942531 TAAAATTATCGAAATACCCCCAGTTTG
1 TAAAATTACCGAAATACCCCTAGTTTG
* *
36942558 TAAAATTACCGTAACACCCCT
1 TAAAATTACCGAAATACCCCT
36942579 GTAGGATAAA
Statistics
Matches: 216, Mismatches: 31, Indels: 25
0.79 0.11 0.09
Matches are distributed among these distances:
24 4 0.02
25 3 0.01
26 96 0.44
27 106 0.49
28 5 0.02
29 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCCTAGTTTG
Found at i:36942361 original size:53 final size:53
Alignment explanation
Indices: 36942293--36942566 Score: 287
Period size: 53 Copynumber: 5.2 Consensus size: 53
36942283 CCCCGATTTA
*
36942293 TAAAATTATCT-AAATACCCTCAGTTGTAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTA-CTGAAATACCCTCAGTTGTAAAATTACCGAAATACCCCTAGTTTG
* **
36942346 TAAAATTACTGAAATACCC-CTGATTGTAAAATTACCGAAATA-CTTTCAGTTTG
1 TAAAATTACTGAAATACCCTCAG-TTGTAAAATTACCGAAATACCCCT-AGTTTG
* ** * *
36942399 TAAAATAACCAAAATACCCCCTA-TTGTAAAATTACCGAAATA-CCCTCGATTTG
1 TAAAATTACTGAAATACCCTC-AGTTGTAAAATTACCGAAATACCCCTAG-TTTG
* *
36942452 TAAAATTA-TCGAAATATGCCT-AGTTTGTAAAATTACCGAAATACCCCTA-ATTG
1 TAAAATTACT-GAAATA-CCCTCAG-TTGTAAAATTACCGAAATACCCCTAGTTTG
* *
36942505 TAAAATTACTGAAATACCCCTCA-TTGTAAAATTATCGAAATACCCCCAGTTTG
1 TAAAATTACTGAAATA-CCCTCAGTTGTAAAATTACCGAAATACCCCTAGTTTG
36942558 TAAAATTAC
1 TAAAATTAC
36942567 CGTAACACCC
Statistics
Matches: 184, Mismatches: 23, Indels: 28
0.78 0.10 0.12
Matches are distributed among these distances:
52 31 0.17
53 125 0.68
54 24 0.13
55 4 0.02
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (53 bp):
TAAAATTACTGAAATACCCTCAGTTGTAAAATTACCGAAATACCCCTAGTTTG
Found at i:36942615 original size:133 final size:132
Alignment explanation
Indices: 36942318--36942628 Score: 330
Period size: 133 Copynumber: 2.3 Consensus size: 132
36942308 ACCCTCAGTT
* * * *
36942318 GTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTGAAATACCCCTGATTGTAAAATTACCG
1 GTAAAATTATCAAAATGCCCCTAGTTTGTAAAATTACCGAAATACCCCTAATTGTAAAATTACCG
** *
36942383 AAATACTTTCAGTTTGTAAAATAACCAAAATACCCCCTATTGTAAAATTACCGAAATACCCTCGA
66 AAATACCCTCAG-TTGTAAAATAACCAAAATACCCCCTATTGTAAAATTACCGAAACACCCTCGA
**
36942448 TTT
130 TAG
36942451 GTAAAATTATCGAAATATG--CCTAGTTTGTAAAATTACCGAAATACCCCTAATTGTAAAATTAC
1 GTAAAATTATC-AAA-ATGCCCCTAGTTTGTAAAATTACCGAAATACCCCTAATTGTAAAATTAC
* * * * *
36942514 TGAAATACCCCTCA-TTGTAAAATTATCGAAATACCCCC-AGTTTGTAAAATTACCGTAACACCC
64 CGAAATA-CCCTCAGTTGTAAAATAACCAAAATACCCCCTA--TTGTAAAATTACCGAAACACCC
36942577 -CTG-TAG
126 TC-GATAG
* * * *
36942583 GATAAAATTATCATAATGCCCCT-GTATGGTAAAATGACCGTAATAC
1 G-TAAAATTATCAAAATGCCCCTAGT-TTGTAAAATTACCGAAATAC
36942629 ACTTGTATAG
Statistics
Matches: 150, Mismatches: 18, Indels: 20
0.80 0.10 0.11
Matches are distributed among these distances:
131 4 0.03
132 28 0.19
133 109 0.73
134 7 0.05
135 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.30
Consensus pattern (132 bp):
GTAAAATTATCAAAATGCCCCTAGTTTGTAAAATTACCGAAATACCCCTAATTGTAAAATTACCG
AAATACCCTCAGTTGTAAAATAACCAAAATACCCCCTATTGTAAAATTACCGAAACACCCTCGAT
AG
Found at i:36942626 original size:27 final size:26
Alignment explanation
Indices: 36942478--36942628 Score: 90
Period size: 27 Copynumber: 5.7 Consensus size: 26
36942468 TGCCTAGTTT
* * *
36942478 GTAAAATTACCGAAATACCCCT-AATT
1 GTAAAATTACCGTAATACCCCTGTA-G
* * * *
36942504 GTAAAATTACTGAAATACCCCT-CATT
1 GTAAAATTACCGTAATACCCCTGTA-G
* * * **
36942530 GTAAAATTATCGAAATACCCCCAGTTT
1 GTAAAATTACCGTAATA-CCCCTGTAG
*
36942557 GTAAAATTACCGTAACACCCCTGTAG
1 GTAAAATTACCGTAATACCCCTGTAG
* * *
36942583 GATAAAATTATCATAATGCCCCTGTATG
1 G-TAAAATTACCGTAATACCCCTGTA-G
*
36942611 GTAAAATGACCGTAATAC
1 GTAAAATTACCGTAATAC
36942629 ACTTGTATAG
Statistics
Matches: 100, Mismatches: 21, Indels: 7
0.78 0.16 0.05
Matches are distributed among these distances:
26 46 0.46
27 52 0.52
28 2 0.02
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (26 bp):
GTAAAATTACCGTAATACCCCTGTAG
Found at i:36942838 original size:27 final size:27
Alignment explanation
Indices: 36942786--36942870 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
36942776 GGAAGTTCTG
* *
36942786 TACTGGTGACTATGTCAC-ATTCACTGT
1 TACTGGTGGCTATGCCACAATT-ACTGT
*
36942813 TACTGGTGGCTATGCCACAATTACTGA
1 TACTGGTGGCTATGCCACAATTACTGT
* * *
36942840 TACGGGTGGCTTTGCCACACTTA-TGT
1 TACTGGTGGCTATGCCACAATTACTGT
36942866 T-CTGG
1 TACTGG
36942871 CAGCTATACT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
25 3 0.06
26 3 0.06
27 40 0.82
28 3 0.06
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.34
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACAATTACTGT
Found at i:36953442 original size:48 final size:48
Alignment explanation
Indices: 36953208--36953451 Score: 232
Period size: 48 Copynumber: 5.1 Consensus size: 48
36953198 ATATGGCATC
* * * *
36953208 GGCATCGGCATCGATATGTGATCCCATGTAAGACCATGTTTGAGACAT
1 GGCATTGGCATCTATATGTGATCCCATGTAAGACCATGTCTGGGACAT
*
36953256 GGCATTGGCATCGT-TATGTGATCCCATGTAAGACCATGTTTGGGACAT
1 GGCATTGGCATC-TATATGTGATCCCATGTAAGACCATGTCTGGGACAT
* * * * *
36953304 GGCATTGGCATCGATATGAGAACATCGTGTAAGACCATAG-CTGGG-CTAT
1 GGCATTGGCATCTATATGTGATC-CCATGTAAGACCAT-GTCTGGGAC-AT
* * * *
36953353 CGGC-TTCG-A--TATGTGTGATCCCATGAAAGACAATGTCTGGGACAT
1 -GGCATTGGCATCTATATGTGATCCCATGTAAGACCATGTCTGGGACAT
* * * *
36953398 GGCATTGGCATCTATAAGTGGTCCCATGTAAGACCATATCTGGGATAT
1 GGCATTGGCATCTATATGTGATCCCATGTAAGACCATGTCTGGGACAT
36953446 GGCATT
1 GGCATT
36953452 TGCACCCTAC
Statistics
Matches: 158, Mismatches: 26, Indels: 24
0.76 0.12 0.12
Matches are distributed among these distances:
44 4 0.03
45 20 0.13
46 9 0.06
48 100 0.63
49 21 0.13
50 4 0.03
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (48 bp):
GGCATTGGCATCTATATGTGATCCCATGTAAGACCATGTCTGGGACAT
Found at i:36956041 original size:17 final size:17
Alignment explanation
Indices: 36956002--36956055 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
36955992 TGGATTACTG
*
36956002 AAATCAAATGATATAGAGC
1 AAATAAAATGATAT-G-GC
*
36956021 -AATAAATTGATATGGC
1 AAATAAAATGATATGGC
*
36956037 AAATAAAATGATGTGGC
1 AAATAAAATGATATGGC
36956054 AA
1 AA
36956056 TTCACAGAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
16 2 0.07
17 17 0.57
18 11 0.37
ACGTcount: A:0.50, C:0.07, G:0.19, T:0.24
Consensus pattern (17 bp):
AAATAAAATGATATGGC
Found at i:36956895 original size:16 final size:16
Alignment explanation
Indices: 36956859--36956898 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
36956849 CTCACGCTAA
**
36956859 TTCTGTTTTCTCTTTTT
1 TTCT-TTTTCTCTTTGC
36956876 TTCTTTTTCTCTTTGC
1 TTCTTTTTCTCTTTGC
36956892 TTCTTTT
1 TTCTTTT
36956899 ATTGGGTAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.00, C:0.20, G:0.05, T:0.75
Consensus pattern (16 bp):
TTCTTTTTCTCTTTGC
Found at i:36959557 original size:14 final size:14
Alignment explanation
Indices: 36959538--36959567 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
36959528 CACTATGTGT
36959538 GTGAGTATTCCCGA
1 GTGAGTATTCCCGA
*
36959552 GTGAGTATTCTCGA
1 GTGAGTATTCCCGA
36959566 GT
1 GT
36959568 ATCTGATGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.17, G:0.30, T:0.33
Consensus pattern (14 bp):
GTGAGTATTCCCGA
Found at i:36968052 original size:37 final size:37
Alignment explanation
Indices: 36968002--36968080 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
36967992 TTATTACGAA
* * *
36968002 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
36968039 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
36968076 GTCTT
1 GTCTT
36968081 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:36968277 original size:47 final size:47
Alignment explanation
Indices: 36968199--36968609 Score: 750
Period size: 47 Copynumber: 8.7 Consensus size: 47
36968189 CCCTTCGGGA
* * * * * *
36968199 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36968246 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36968293 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36968340 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36968387 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36968434 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36968481 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36968528 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36968575 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
36968610 AGAATCCTAA
Statistics
Matches: 354, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 354 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36969771 original size:18 final size:18
Alignment explanation
Indices: 36969748--36969789 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
36969738 CATATGCATT
36969748 TTTAATCACATCAAGCAA
1 TTTAATCACATCAAGCAA
36969766 TTTAATCACATCAAGCAA
1 TTTAATCACATCAAGCAA
36969784 TTTAAT
1 TTTAAT
36969790 ACAATTCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.43, C:0.19, G:0.05, T:0.33
Consensus pattern (18 bp):
TTTAATCACATCAAGCAA
Found at i:36975619 original size:63 final size:63
Alignment explanation
Indices: 36975515--36975639 Score: 232
Period size: 63 Copynumber: 2.0 Consensus size: 63
36975505 ATTTAAAATG
*
36975515 TGTTGTATTTGATTTCATTTGAAATTAGACTCATTAAGGAGTCTAAGCATATAAATTTTATCA
1 TGTTGTATTTGATTTCATTTGAAACTAGACTCATTAAGGAGTCTAAGCATATAAATTTTATCA
*
36975578 TGTTTTATTTGATTTCATTTGAAACTAGACTCATTAAGGAGTCTAAGCATATAAATTTTATC
1 TGTTGTATTTGATTTCATTTGAAACTAGACTCATTAAGGAGTCTAAGCATATAAATTTTATC
36975640 TTATAACCAT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (63 bp):
TGTTGTATTTGATTTCATTTGAAACTAGACTCATTAAGGAGTCTAAGCATATAAATTTTATCA
Found at i:36977422 original size:85 final size:85
Alignment explanation
Indices: 36977293--36977641 Score: 680
Period size: 85 Copynumber: 4.1 Consensus size: 85
36977283 TATTTTATTG
*
36977293 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
36977358 TAACCATAACATCTTGTCCA
66 TAACCATAACATCTTGTCCA
36977378 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
36977443 TAACCATAACATCTTGTCCA
66 TAACCATAACATCTTGTCCA
36977463 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
36977528 TAACCATAACATCTTGTCCA
66 TAACCATAACATCTTGTCCA
36977548 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
*
36977613 TAGCCATAACATCTTGTCCA
66 TAACCATAACATCTTGTCCA
36977633 CCCATGCTC
1 CCCATGCTC
36977642 ATGGCCGACC
Statistics
Matches: 262, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 262 1.00
ACGTcount: A:0.28, C:0.27, G:0.07, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAACCATAACATCTTGTCCA
Found at i:36978135 original size:19 final size:19
Alignment explanation
Indices: 36978111--36978153 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
36978101 TAGTTTGCAT
36978111 TCAAACATATGTCTAAATA
1 TCAAACATATGTCTAAATA
36978130 TCAAACATATGTCTAAATA
1 TCAAACATATGTCTAAATA
36978149 TCAAA
1 TCAAA
36978154 TGGAACAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.49, C:0.16, G:0.05, T:0.30
Consensus pattern (19 bp):
TCAAACATATGTCTAAATA
Found at i:36981332 original size:57 final size:58
Alignment explanation
Indices: 36981244--36981381 Score: 165
Period size: 57 Copynumber: 2.4 Consensus size: 58
36981234 CATATAACAG
* ** * * *
36981244 GATTACCAGTCCAGGCTAAATCCTTTTTGTAATATATGCTC-AGAAGAGCTTA-ATTAA
1 GATTACCAGTCCAGCCTAAATCCTAATTGTAACATATGCTCGAG-AGAGATTATATCAA
* *
36981301 GATTACCAGTCCAGCCTAATTCCTAATTGTAACATATGCTCGAGAGGGATTATATCAA
1 GATTACCAGTCCAGCCTAAATCCTAATTGTAACATATGCTCGAGAGAGATTATATCAA
36981359 GATTACCAGTCCAAG-CTAAATCC
1 GATTACCAGTCC-AGCCTAAATCC
36981382 CGTTAGCAAC
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
57 42 0.61
58 25 0.36
59 2 0.03
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (58 bp):
GATTACCAGTCCAGCCTAAATCCTAATTGTAACATATGCTCGAGAGAGATTATATCAA
Found at i:36988996 original size:45 final size:45
Alignment explanation
Indices: 36988947--36989119 Score: 168
Period size: 45 Copynumber: 3.8 Consensus size: 45
36988937 ACTAGAAACG
* * * *
36988947 AGTAAGACCTTGACTGAAAGACATTATGGCATCACGATTCTATCA
1 AGTAAGACCATGACTGAAAGAAACTATGGCATCACAATTCTATCA
* * *
36988992 AGTAAGACCATGACTAAAAGAAAGTATGGCATCACAATTCTATCG
1 AGTAAGACCATGACTGAAAGAAACTATGGCATCACAATTCTATCA
** * * **
36989037 AGTAAGACCAT-AGCTGAAAGATGCTATGGCATCACAAATCAAAGA
1 AGTAAGACCATGA-CTGAAAGAAACTATGGCATCACAATTCTATCA
* ** * *
36989082 AATAAGACCATGGTTGAAAGACACTATGGCAACACAAT
1 AGTAAGACCATGACTGAAAGAAACTATGGCATCACAAT
36989120 AGAAAATGAA
Statistics
Matches: 104, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
44 1 0.01
45 103 0.99
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.21
Consensus pattern (45 bp):
AGTAAGACCATGACTGAAAGAAACTATGGCATCACAATTCTATCA
Found at i:36989152 original size:46 final size:46
Alignment explanation
Indices: 36989082--36989230 Score: 194
Period size: 46 Copynumber: 3.3 Consensus size: 46
36989072 AAATCAAAGA
* *
36989082 AATAAGACCATGGTTGAAAGACACTATGGCAACACAATAGAAAATG
1 AATAAGACCATGGTTGAAAGACACTATGACAACACAACAGAAAATG
* * * *
36989128 AATAAAACCATGGTTGAAATACACTATGACAACACGACGGAAAATG
1 AATAAGACCATGGTTGAAAGACACTATGACAACACAACAGAAAATG
* * *
36989174 AATAAGACCATGGTTGAAAGACACTATGACATCA-AGAC-GAGAATA
1 AATAAGACCATGGTTGAAAGACACTATGACAACACA-ACAGAAAATG
36989219 AATAAGACCATG
1 AATAAGACCATG
36989231 ACCGAAGACA
Statistics
Matches: 90, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
45 17 0.19
46 73 0.81
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.17
Consensus pattern (46 bp):
AATAAGACCATGGTTGAAAGACACTATGACAACACAACAGAAAATG
Found at i:36990627 original size:18 final size:18
Alignment explanation
Indices: 36990604--36990642 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
36990594 TTTTGATGCC
36990604 TTGTTGATGTGTGTTATT
1 TTGTTGATGTGTGTTATT
36990622 TTGTTGATGTGTGTTATT
1 TTGTTGATGTGTGTTATT
36990640 TTG
1 TTG
36990643 ACAATGTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.10, C:0.00, G:0.28, T:0.62
Consensus pattern (18 bp):
TTGTTGATGTGTGTTATT
Found at i:36990649 original size:18 final size:18
Alignment explanation
Indices: 36990610--36990651 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
36990600 TGCCTTGTTG
***
36990610 ATGTGTGTTATTTTGTTG
1 ATGTGTGTTATTTTGACA
36990628 ATGTGTGTTATTTTGACA
1 ATGTGTGTTATTTTGACA
36990646 ATGTGT
1 ATGTGT
36990652 TAATGAATGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.17, C:0.02, G:0.26, T:0.55
Consensus pattern (18 bp):
ATGTGTGTTATTTTGACA
Found at i:36993800 original size:28 final size:27
Alignment explanation
Indices: 36993734--36993801 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 27
36993724 ACTCTTTTAA
*
36993734 AATTTGAAATTTAGTCTTTATATTTTT
1 AATTTAAAATTTAGTCTTTATATTTTT
*
36993761 ATTTTAAGAATTTAGTCTTT-TATGTTTT
1 AATTTAA-AATTTAGTCTTTATAT-TTTT
36993789 AGATTTAAAATTT
1 A-ATTTAAAATTT
36993802 TATATCCATT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
27 8 0.23
28 22 0.63
29 5 0.14
ACGTcount: A:0.31, C:0.03, G:0.09, T:0.57
Consensus pattern (27 bp):
AATTTAAAATTTAGTCTTTATATTTTT
Found at i:36995160 original size:6 final size:6
Alignment explanation
Indices: 36995151--36995175 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
36995141 TATAACTTAG
36995151 CGCTCT CGCTCT CGCTCT CGCTCT C
1 CGCTCT CGCTCT CGCTCT CGCTCT C
36995176 TTTTATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.52, G:0.16, T:0.32
Consensus pattern (6 bp):
CGCTCT
Found at i:36995210 original size:6 final size:6
Alignment explanation
Indices: 36995194--36995235 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
36995184 TTCAGAGAAG
*
36995194 AAAAG- AAAAGAA AAAGAGA AAAAGA AAAAGA AAAAGA GAAAG
1 AAAAGA AAAAG-A AAA-AGA AAAAGA AAAAGA AAAAGA AAAAG
36995236 GGGGAATGGA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
5 5 0.15
6 19 0.58
7 7 0.21
8 2 0.06
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:36995218 original size:14 final size:13
Alignment explanation
Indices: 36995199--36995234 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 13
36995189 AGAAGAAAAG
36995199 AAAAGAAAAAGAGA
1 AAAAGAAAAAGA-A
36995213 AAAAGAAAAAGAA
1 AAAAGAAAAAGAA
36995226 AAAGAGAAA
1 AAA-AGAAA
36995235 GGGGGAATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 4 0.19
14 17 0.81
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAAGAA
Found at i:36995224 original size:20 final size:19
Alignment explanation
Indices: 36995194--36995234 Score: 73
Period size: 20 Copynumber: 2.1 Consensus size: 19
36995184 TTCAGAGAAG
36995194 AAAAGAAAAGAAAAAGAGA
1 AAAAGAAAAGAAAAAGAGA
36995213 AAAAGAAAAAGAAAAAGAGA
1 AAAAG-AAAAGAAAAAGAGA
36995233 AA
1 AA
36995235 GGGGGAATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (19 bp):
AAAAGAAAAGAAAAAGAGA
Found at i:37004049 original size:46 final size:46
Alignment explanation
Indices: 37003948--37004036 Score: 115
Period size: 46 Copynumber: 1.9 Consensus size: 46
37003938 TGTAACCCGC
* * * *
37003948 CCATAAGCGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACGCTCACAT
* * *
37003994 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACGCTCA
37004037 ACCATCCTAG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 36 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACGCTCACAT
Found at i:37008707 original size:77 final size:77
Alignment explanation
Indices: 37008580--37008732 Score: 288
Period size: 77 Copynumber: 2.0 Consensus size: 77
37008570 CGAAAATATT
37008580 CATTTGCTCTACACGGACCAAAATGATTTCTACCACACCGATGGCACTCAGGTTTAACAAATCTC
1 CATTTGCTCTACACGGACCAAAATGATTTCTACCACACCGATGGCACTCAGGTTTAACAAATCTC
37008645 AAGTTCCCTACA
66 AAGTTCCCTACA
*
37008657 CATTTGCTCTACACGGACCAAAATGATTTCTACCACACCGCTGGCACTCAGGTTTAACAAATCTC
1 CATTTGCTCTACACGGACCAAAATGATTTCTACCACACCGATGGCACTCAGGTTTAACAAATCTC
*
37008722 GAGTTCCCTAC
66 AAGTTCCCTAC
37008733 GCTGGCTGCC
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
77 74 1.00
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.26
Consensus pattern (77 bp):
CATTTGCTCTACACGGACCAAAATGATTTCTACCACACCGATGGCACTCAGGTTTAACAAATCTC
AAGTTCCCTACA
Found at i:37011206 original size:46 final size:46
Alignment explanation
Indices: 37011139--37011498 Score: 575
Period size: 46 Copynumber: 7.8 Consensus size: 46
37011129 TGTAACCCGC
* * * * *
37011139 CCATAAGCGAACTCGGACTCAACTCAAAGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
37011185 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
37011231 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
37011277 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
37011323 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
37011373 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
37011416 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
37011462 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37011499 TGCTCAACCA
Statistics
Matches: 294, Mismatches: 11, Indels: 18
0.91 0.03 0.06
Matches are distributed among these distances:
42 2 0.01
43 4 0.01
44 2 0.01
45 2 0.01
46 245 0.83
47 29 0.10
48 2 0.01
49 2 0.01
50 4 0.01
51 2 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:37031095 original size:46 final size:47
Alignment explanation
Indices: 37030940--37031107 Score: 150
Period size: 46 Copynumber: 3.6 Consensus size: 47
37030930 AGGTTGACGC
* * * *
37030940 CATGTCCCAAACATGGTCTTACACTAGCTCTCAAATATCCGTGCCAATG
1 CATGTCCCAAACATGGTCTTACACTGGCT-T-ACATATTCGAGCCAATG
* * * **
37030989 CCATGTCCCAGACATGGTCTTACACTGAC--ACATCTT-GTAGCTGATG
1 -CATGTCCCAAACATGGTCTTACACTGGCTTACATATTCG-AGCCAATG
* *
37031035 CATGTCCTAGACAT-GTCTTACACTGGCTTACAT-TTCGAGGCCAATG
1 CATGTCCCAAACATGGTCTTACACTGGCTTACATATTCGA-GCCAATG
37031081 CATGTCCCAAACAT-GTCTTACACTGGC
1 CATGTCCCAAACATGGTCTTACACTGGC
37031108 AAACAAATAA
Statistics
Matches: 98, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
44 12 0.12
45 17 0.17
46 44 0.45
50 25 0.26
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (47 bp):
CATGTCCCAAACATGGTCTTACACTGGCTTACATATTCGAGCCAATG
Found at i:37038629 original size:46 final size:46
Alignment explanation
Indices: 37038573--37038742 Score: 154
Period size: 46 Copynumber: 3.7 Consensus size: 46
37038563 TGGTTGAGCA
*
37038573 TCCGAACTCGTTGAGTTGGGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* * *
37038619 TCCGAACTCGTTGAGTTGAGTCAGAGTT---C-GTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATG-GATGCGAA-T--G
* * *
37038664 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* *
37038712 -CCTGAGCTCGTTGAGTTGGGTCCGAGTTCAC
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCAC
37038743 TTAGAGGCGG
Statistics
Matches: 99, Mismatches: 13, Indels: 24
0.73 0.10 0.18
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
45 3 0.03
46 51 0.52
47 26 0.26
48 1 0.01
50 4 0.04
51 4 0.04
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
Found at i:37038729 original size:93 final size:93
Alignment explanation
Indices: 37038570--37038740 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
37038560 GGATGGTTGA
* * *
37038570 GCATCCGAACTCGTTGAGTTGGGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAGT
37038635 TGAGTCAGAGTTCGTGAGATGTAACTAG
66 TGAGTCAGAGTTCGTGAGATGTAACTAG
* *
37038663 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCC-GAACTCGTTGAG
* *
37038727 TTGGGTCCGAGTTC
65 TTGAGTCAGAGTTC
37038741 ACTTAGAGGC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCAGAGTTCGTGAGATGTAACTAG
Found at i:37046320 original size:93 final size:93
Alignment explanation
Indices: 37046161--37046331 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
37046151 GGATGGTTGA
* *
37046161 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATAGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATAGATGCGAACGCCCGAACTCGTTGAGT
37046226 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * **
37046254 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGTTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATAGATGCGAACGCCCGAACTCGTTGAGT
37046319 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
37046332 ACTTAGGGGT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATAGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:37046334 original size:46 final size:45
Alignment explanation
Indices: 37046165--37046336 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 45
37046155 GGTTGAGCAT
* * *
37046165 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATAGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCGAACGC
* * *
37046211 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAAC---GC
37046256 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCGAACGC
**
37046304 CCGAGTTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
37046337 GGGGTGGGTT
Statistics
Matches: 106, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 2 0.02
46 59 0.56
47 28 0.26
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAACGC
Found at i:37047802 original size:46 final size:44
Alignment explanation
Indices: 37047713--37047835 Score: 142
Period size: 46 Copynumber: 2.7 Consensus size: 44
37047703 ACATATCCAT
37047713 GCCAATGCCATGTCCCAAACATGGTCTTACACTGACAAGTCTCGTA-
1 GCCAATG-CATGTCCCAAACAT-GTCTTACACTGACAAGTCTCG-AG
* *
37047759 GCCAATGCATGTCCGAAACATGTCTTACACTGGCTTACA-TCTCGAG
1 GCCAATGCATGTCCCAAACATGTCTTACACTGAC--A-AGTCTCGAG
* *
37047805 GCCTATGCATGTCCCAGACATGTCTTACACT
1 GCCAATGCATGTCCCAAACATGTCTTACACT
37047836 AGCACACAAA
Statistics
Matches: 68, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
44 12 0.18
45 14 0.21
46 41 0.60
47 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (44 bp):
GCCAATGCATGTCCCAAACATGTCTTACACTGACAAGTCTCGAG
Found at i:37052664 original size:160 final size:160
Alignment explanation
Indices: 37052400--37052722 Score: 646
Period size: 160 Copynumber: 2.0 Consensus size: 160
37052390 AAATTGATTT
37052400 TGAGTTCTGTAGCTTCAGTTATAAATAATTTAGTAACTATTGCTCAGGAAAATAGCTTGTGGTGA
1 TGAGTTCTGTAGCTTCAGTTATAAATAATTTAGTAACTATTGCTCAGGAAAATAGCTTGTGGTGA
37052465 ATATGTGAATTTGTTGTAAACATTGATGAAACTATTTGAGTTGCTTATAAGCTATGGCTGAAATT
66 ATATGTGAATTTGTTGTAAACATTGATGAAACTATTTGAGTTGCTTATAAGCTATGGCTGAAATT
37052530 GATGTACAAGATATATATATATATGTGTGG
131 GATGTACAAGATATATATATATATGTGTGG
37052560 TGAGTTCTGTAGCTTCAGTTATAAATAATTTAGTAACTATTGCTCAGGAAAATAGCTTGTGGTGA
1 TGAGTTCTGTAGCTTCAGTTATAAATAATTTAGTAACTATTGCTCAGGAAAATAGCTTGTGGTGA
37052625 ATATGTGAATTTGTTGTAAACATTGATGAAACTATTTGAGTTGCTTATAAGCTATGGCTGAAATT
66 ATATGTGAATTTGTTGTAAACATTGATGAAACTATTTGAGTTGCTTATAAGCTATGGCTGAAATT
37052690 GATGTACAAGATATATATATATATGTGTGG
131 GATGTACAAGATATATATATATATGTGTGG
37052720 TGA
1 TGA
37052723 AGCCGAATGG
Statistics
Matches: 163, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
160 163 1.00
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (160 bp):
TGAGTTCTGTAGCTTCAGTTATAAATAATTTAGTAACTATTGCTCAGGAAAATAGCTTGTGGTGA
ATATGTGAATTTGTTGTAAACATTGATGAAACTATTTGAGTTGCTTATAAGCTATGGCTGAAATT
GATGTACAAGATATATATATATATGTGTGG
Found at i:37052774 original size:48 final size:48
Alignment explanation
Indices: 37052706--37052867 Score: 234
Period size: 48 Copynumber: 3.4 Consensus size: 48
37052696 CAAGATATAT
* * * * *
37052706 ATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* * * *
37052754 ATATGTATATGTGGTAAAGCCAAATGACGAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
37052802 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGGAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
37052850 ATATGTATATGTGGTAAA
1 ATATGTATATGTGGTAAA
37052868 ATAAAATTCT
Statistics
Matches: 100, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 100 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
Found at i:37053158 original size:48 final size:48
Alignment explanation
Indices: 37053098--37053315 Score: 337
Period size: 48 Copynumber: 4.5 Consensus size: 48
37053088 TATATATGTG
* * *
37053098 TGGTGAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATA
1 TGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATA
* * *
37053146 TGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATA
* *
37053194 TGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATA
1 TGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATA
* * *
37053242 TGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATA
37053290 TGGTAAAGCCGAATGGCTAATGTGAA
1 TGGTAAAGCCGAATGGCTAATGTGAA
37053316 TGTTGTAACA
Statistics
Matches: 153, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 153 1.00
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
TGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATA
Found at i:37053242 original size:96 final size:96
Alignment explanation
Indices: 37053087--37053315 Score: 431
Period size: 96 Copynumber: 2.4 Consensus size: 96
37053077 CAAGATATAT
* * *
37053087 ATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATATGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATATGGTAA
37053152 AGCCGAATGGCGAATGTGAAATATGTATGAG
66 AGCCGAATGGCGAATGTGAAATATGTATGAG
37053183 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATATGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATATGGTAA
37053248 AGCCGAATGGCGAATGTGAAATATGTATGAG
66 AGCCGAATGGCGAATGTGAAATATGTATGAG
37053279 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
37053316 TGTTGTAACA
Statistics
Matches: 130, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
96 130 1.00
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.31
Consensus pattern (96 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATATGGTAA
AGCCGAATGGCGAATGTGAAATATGTATGAG
Found at i:37061764 original size:48 final size:47
Alignment explanation
Indices: 37061712--37061806 Score: 136
Period size: 48 Copynumber: 2.0 Consensus size: 47
37061702 TTTAGTTCTT
* *
37061712 TCCCTAATTAAACACACAATTGATAAAATTTTCATATCAAAATTTTC
1 TCCCTAATTAAACACACAATCGATAAAATTTTCATACCAAAATTTTC
* * *
37061759 NTCCCTAATTAAACACATAATCGGTAAAATTTTCTTACCAAAATTTTC
1 -TCCCTAATTAAACACACAATCGATAAAATTTTCATACCAAAATTTTC
37061807 ATGTGACCTT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.40, C:0.20, G:0.03, T:0.36
Consensus pattern (47 bp):
TCCCTAATTAAACACACAATCGATAAAATTTTCATACCAAAATTTTC
Found at i:37063794 original size:80 final size:80
Alignment explanation
Indices: 37063661--37063824 Score: 310
Period size: 80 Copynumber: 2.0 Consensus size: 80
37063651 CATCAATACA
37063661 CATCCCAAACCATTCAATGAGGCATAGCTGTAAACTATAAATTCCTTACCCGATTTAGGTTGGAC
1 CATCCCAAACCATTCAATGAGGCATAGCTGTAAACTATAAATTCCTTACCCGATTTAGGTTGGAC
*
37063726 TAATATAGGCGTTTC
66 TAATATAGGAGTTTC
*
37063741 CATCCCAAACCATTCAATGAGGCATAGCTGTAAACTATAAATTTCTTACCCGATTTAGGTTGGAC
1 CATCCCAAACCATTCAATGAGGCATAGCTGTAAACTATAAATTCCTTACCCGATTTAGGTTGGAC
37063806 TAATATAGGAGTTTC
66 TAATATAGGAGTTTC
37063821 CATC
1 CATC
37063825 AATAAAGCTT
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 82 1.00
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (80 bp):
CATCCCAAACCATTCAATGAGGCATAGCTGTAAACTATAAATTCCTTACCCGATTTAGGTTGGAC
TAATATAGGAGTTTC
Found at i:37065562 original size:43 final size:42
Alignment explanation
Indices: 37065499--37065618 Score: 134
Period size: 43 Copynumber: 2.8 Consensus size: 42
37065489 TACCATACCA
** * *
37065499 ATGCCATATACCAAATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATAGCCCAGATATGGTCTTACATGTAATCTCATATCG
* **
37065541 ATGCCAATAGCCCAGCTATGGTCTTAC-TCAAAGTCTCATATCG
1 ATGCC-ATAGCCCAGATATGGTCTTACATGTAA-TCTCATATCG
* *
37065584 ATGCCATATCCCAGATATGGTCTTACACGTAATCT
1 ATGCCATAGCCCAGATATGGTCTTACATGTAATCT
37065619 TAGTAACCCT
Statistics
Matches: 63, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
42 30 0.48
43 33 0.52
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (42 bp):
ATGCCATAGCCCAGATATGGTCTTACATGTAATCTCATATCG
Found at i:37068616 original size:48 final size:48
Alignment explanation
Indices: 37068559--37068932 Score: 658
Period size: 48 Copynumber: 7.8 Consensus size: 48
37068549 TGTTACAACA
37068559 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
37068607 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
37068655 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
37068703 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
37068751 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * * *
37068799 TTCACATTCGTCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
37068847 TTCACATTCGTCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
37068895 TTCACATTAGCCATTCGGCTTTACCACATATACATATC
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATC
37068933 NNNNNNNNNN
Statistics
Matches: 316, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 316 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:37074959 original size:43 final size:41
Alignment explanation
Indices: 37074897--37075016 Score: 136
Period size: 43 Copynumber: 2.8 Consensus size: 41
37074887 TACAATACCA
* *
37074897 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATTG
1 ATGCCATATCCCAGATATGGTCTTACA-GTAATCTCATATCG
* *
37074939 ATGCCAATAGCCCAGCTATGGTC-T-CAGTCAAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACAGT--AA-TCTCATATCG
37074982 ATGCCATATCCCAGATATGGTCTTACACGTAATCT
1 ATGCCATATCCCAGATATGGTCTTACA-GTAATCT
37075017 TAGTAGCCCT
Statistics
Matches: 65, Mismatches: 6, Indels: 14
0.76 0.07 0.16
Matches are distributed among these distances:
40 2 0.03
41 2 0.03
42 26 0.40
43 31 0.48
44 2 0.03
45 2 0.03
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.31
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACAGTAATCTCATATCG
Found at i:37078042 original size:13 final size:13
Alignment explanation
Indices: 37078024--37078049 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37078014 TACTCGGACA
37078024 CTGTCATATTTCC
1 CTGTCATATTTCC
37078037 CTGTCATATTTCC
1 CTGTCATATTTCC
37078050 TTATTTGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.08, T:0.46
Consensus pattern (13 bp):
CTGTCATATTTCC
Found at i:37080278 original size:38 final size:38
Alignment explanation
Indices: 37080227--37080302 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
37080217 TTCATCCTTT
*
37080227 TTCATTTCTTTTGGCCGACAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
37080265 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
37080303 GGAGTTCTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:37081585 original size:40 final size:40
Alignment explanation
Indices: 37081491--37081635 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
37081481 TACTCGAATG
*
37081491 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
37081532 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
37081572 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
37081612 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
37081636 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:37088987 original size:49 final size:49
Alignment explanation
Indices: 37088927--37090112 Score: 2111
Period size: 49 Copynumber: 24.6 Consensus size: 49
37088917 GATAATTGTG
37088927 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
37088974 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37089021 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
37089070 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37089117 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37089166 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37089213 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37089262 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37089311 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37089360 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37089409 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37089458 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37089507 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37089556 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37089605 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37089654 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37089703 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37089752 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37089801 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37089850 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37089899 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCTATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37089946 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37089993 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
37090040 ATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37090087 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
37090113 TCCCGAAGGG
Statistics
Matches: 1104, Mismatches: 25, Indels: 20
0.96 0.02 0.02
Matches are distributed among these distances:
47 324 0.29
48 3 0.00
49 777 0.70
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:37110215 original size:29 final size:29
Alignment explanation
Indices: 37110182--37110238 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
37110172 AATGAATGAG
37110182 ATTGGTGAGTTTAGTTTCCATTATACGAT
1 ATTGGTGAGTTTAGTTTCCATTATACGAT
37110211 ATTGGTGAGTTTAGTTTCCATTATACGA
1 ATTGGTGAGTTTAGTTTCCATTATACGA
37110239 ACTTACGAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.25, C:0.11, G:0.21, T:0.44
Consensus pattern (29 bp):
ATTGGTGAGTTTAGTTTCCATTATACGAT
Found at i:37115152 original size:21 final size:21
Alignment explanation
Indices: 37115126--37115202 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
37115116 CGGCCTGTAG
* * *
37115126 CACGGGCATGTCCCAGTGTTA
1 CACGGGCGTGTCCCAGGGTCA
*
37115147 CACGGGTGTGTCCCAGGGTCA
1 CACGGGCGTGTCCCAGGGTCA
*
37115168 CACGGGTGTGTCCCAGGGTCA
1 CACGGGCGTGTCCCAGGGTCA
37115189 CACGGGCGTGTCCC
1 CACGGGCGTGTCCC
37115203 TTGGACCATA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.14, C:0.31, G:0.35, T:0.19
Consensus pattern (21 bp):
CACGGGCGTGTCCCAGGGTCA
Found at i:37116991 original size:37 final size:37
Alignment explanation
Indices: 37116945--37117015 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 37
37116935 TGTTTTCGAT
*
37116945 TGGACTAGCTATTT-GGAGCAATTGGCGTCTTATCGGG
1 TGGACTAGCT-TTTCAGAGCAATTGGCGTCTTATCGGG
* * *
37116982 TGGATTAGCTTTTCAGAGTAATTGGCGTGTTATC
1 TGGACTAGCTTTTCAGAGCAATTGGCGTCTTATC
37117016 AAGCGGATGA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
36 3 0.10
37 26 0.90
ACGTcount: A:0.20, C:0.14, G:0.30, T:0.37
Consensus pattern (37 bp):
TGGACTAGCTTTTCAGAGCAATTGGCGTCTTATCGGG
Found at i:37121645 original size:24 final size:24
Alignment explanation
Indices: 37121618--37121663 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
37121608 TATGTAGTGT
*
37121618 ATCATGGAGAGATATTA-GGAGAAA
1 ATCAAGGAGAGAT-TTATGGAGAAA
*
37121642 ATCAAGGAGTGATTTATGGAGA
1 ATCAAGGAGAGATTTATGGAGA
37121664 GATTTAAGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 3 0.16
24 16 0.84
ACGTcount: A:0.41, C:0.04, G:0.30, T:0.24
Consensus pattern (24 bp):
ATCAAGGAGAGATTTATGGAGAAA
Found at i:37126397 original size:47 final size:48
Alignment explanation
Indices: 37126333--37126423 Score: 139
Period size: 47 Copynumber: 1.9 Consensus size: 48
37126323 TGCAAACCAA
37126333 TGGTGGCTTGCCCACAAAGTGTT-TCAGTGGCAGTATATCTGCATATG
1 TGGTGGCTTGCCCACAAAGTGTTATCAGTGGCAGTATATCTGCATATG
** * *
37126380 TGGTGGCTTTTCCACAAAGTGTTATCAGTGGCAGTTTATTTGCA
1 TGGTGGCTTGCCCACAAAGTGTTATCAGTGGCAGTATATCTGCA
37126424 AATCAATGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 21 0.54
48 18 0.46
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (48 bp):
TGGTGGCTTGCCCACAAAGTGTTATCAGTGGCAGTATATCTGCATATG
Found at i:37127454 original size:55 final size:55
Alignment explanation
Indices: 37127370--37127479 Score: 211
Period size: 55 Copynumber: 2.0 Consensus size: 55
37127360 GGACAAATGG
*
37127370 TTTTTGAAAATAAAGTTGAACATTTGATTGTACTAGTTTTTAATGAACTACACAA
1 TTTTTGAAAATAAAGTTGAACATTTGATTGTACTAGTTTTGAATGAACTACACAA
37127425 TTTTTGAAAATAAAGTTGAACATTTGATTGTACTAGTTTTGAATGAACTACACAA
1 TTTTTGAAAATAAAGTTGAACATTTGATTGTACTAGTTTTGAATGAACTACACAA
37127480 ATGGTTTAAA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.39
Consensus pattern (55 bp):
TTTTTGAAAATAAAGTTGAACATTTGATTGTACTAGTTTTGAATGAACTACACAA
Found at i:37130778 original size:27 final size:27
Alignment explanation
Indices: 37130748--37130801 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
37130738 ATGAATAAAA
*
37130748 TACCCCTATAGGGTAAAATGACT-ATTT
1 TACCCCTAGAGGGT-AAATGACTGATTT
*
37130775 TACCCCTCGAGGGTAAATGACTGATTT
1 TACCCCTAGAGGGTAAATGACTGATTT
37130802 GTGCTATGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 8 0.33
27 16 0.67
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (27 bp):
TACCCCTAGAGGGTAAATGACTGATTT
Found at i:37130985 original size:26 final size:26
Alignment explanation
Indices: 37130954--37131003 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
37130944 TTTACCACAT
37130954 ATACTGTTACTCGCAGCTTTGCTGAG
1 ATACTGTTACTCGCAGCTTTGCTGAG
* *
37130980 ATACTGTTACTGGTAGCTTTGCTG
1 ATACTGTTACTCGCAGCTTTGCTG
37131004 CGAAACTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.18, C:0.20, G:0.24, T:0.38
Consensus pattern (26 bp):
ATACTGTTACTCGCAGCTTTGCTGAG
Found at i:37131019 original size:26 final size:26
Alignment explanation
Indices: 37130968--37131032 Score: 85
Period size: 26 Copynumber: 2.5 Consensus size: 26
37130958 TGTTACTCGC
* * *
37130968 AGCTTTGCTGAGATACTGTTACTGGT
1 AGCTTTGCTGCGAAACTATTACTGGT
*
37130994 AGCTTTGCTGCGAAACTATTATTGGT
1 AGCTTTGCTGCGAAACTATTACTGGT
*
37131020 AGCCTTGCTGCGA
1 AGCTTTGCTGCGA
37131033 TATTGGTGTG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.35
Consensus pattern (26 bp):
AGCTTTGCTGCGAAACTATTACTGGT
Found at i:37133470 original size:27 final size:29
Alignment explanation
Indices: 37133420--37133473 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
37133410 CACTATGTGC
*
37133420 TATATTGGTGTGTTTTGGATGGATTATAT
1 TATACTGGTGTGTTTTGGATGGATTATAT
37133449 TATACTGGTGTG-TTTGGA-GGATTAT
1 TATACTGGTGTGTTTTGGATGGATTAT
37133474 TTAATTACAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 7 0.29
28 6 0.25
29 11 0.46
ACGTcount: A:0.20, C:0.02, G:0.30, T:0.48
Consensus pattern (29 bp):
TATACTGGTGTGTTTTGGATGGATTATAT
Found at i:37133873 original size:26 final size:25
Alignment explanation
Indices: 37133816--37133874 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
37133806 AAGTATGAAA
**
37133816 AAGTGAAATTATGAATTGAAATGTG
1 AAGTGAAATTATGAATTGAAATAAG
*
37133841 AATTGAAATTGA-GATATTGAAATAAG
1 AAGTGAAATT-ATGA-ATTGAAATAAG
37133867 AAGTGAAA
1 AAGTGAAA
37133875 ATAGAATGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 11 0.39
26 17 0.61
ACGTcount: A:0.49, C:0.00, G:0.22, T:0.29
Consensus pattern (25 bp):
AAGTGAAATTATGAATTGAAATAAG
Found at i:37135951 original size:29 final size:31
Alignment explanation
Indices: 37135903--37135966 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 31
37135893 TTTATAATTA
*
37135903 TTTAATTAGATAATTATTATT-TATTTAATAT
1 TTTAATAAGATAATTATTATTAT-TTTAATAT
*
37135934 TTTAATAAGAT-ATT-TTATTATTTTATTAT
1 TTTAATAAGATAATTATTATTATTTTAATAT
37135963 TTTA
1 TTTA
37135967 TTTAGTCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 16 0.53
30 4 0.13
31 10 0.33
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (31 bp):
TTTAATAAGATAATTATTATTATTTTAATAT
Found at i:37135955 original size:8 final size:8
Alignment explanation
Indices: 37135944--37135968 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
37135934 TTTAATAAGA
37135944 TATTTTAT
1 TATTTTAT
37135952 TATTTTAT
1 TATTTTAT
37135960 TATTTTAT
1 TATTTTAT
37135968 T
1 T
37135969 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:37138159 original size:72 final size:72
Alignment explanation
Indices: 37138082--37138241 Score: 320
Period size: 72 Copynumber: 2.2 Consensus size: 72
37138072 TAGTCGGTTG
37138082 TTCTTTCCCCATTCTTTTCTTCCCTCTTTTCTTCCTTTTTGATTTGGAATACCGATTGTACTCGG
1 TTCTTTCCCCATTCTTTTCTTCCCTCTTTTCTTCCTTTTTGATTTGGAATACCGATTGTACTCGG
37138147 CCTTCTT
66 CCTTCTT
37138154 TTCTTTCCCCATTCTTTTCTTCCCTCTTTTCTTCCTTTTTGATTTGGAATACCGATTGTACTCGG
1 TTCTTTCCCCATTCTTTTCTTCCCTCTTTTCTTCCTTTTTGATTTGGAATACCGATTGTACTCGG
37138219 CCTTCTT
66 CCTTCTT
37138226 TTCTTTCCCCATTCTT
1 TTCTTTCCCCATTCTT
37138242 GATTGATTGC
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 88 1.00
ACGTcount: A:0.09, C:0.30, G:0.09, T:0.52
Consensus pattern (72 bp):
TTCTTTCCCCATTCTTTTCTTCCCTCTTTTCTTCCTTTTTGATTTGGAATACCGATTGTACTCGG
CCTTCTT
Found at i:37139522 original size:26 final size:26
Alignment explanation
Indices: 37139493--37139568 Score: 125
Period size: 26 Copynumber: 2.9 Consensus size: 26
37139483 TTCGCCACAT
37139493 ATACTGTTACTGGCGGATTTGCTGAG
1 ATACTGTTACTGGCGGATTTGCTGAG
*
37139519 ATACTGTTATTGGCGGATTTGCTGAG
1 ATACTGTTACTGGCGGATTTGCTGAG
* *
37139545 ATACTGTTACTGGCAGCTTTGCTG
1 ATACTGTTACTGGCGGATTTGCTG
37139569 CGGTATTGGT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.18, C:0.16, G:0.29, T:0.37
Consensus pattern (26 bp):
ATACTGTTACTGGCGGATTTGCTGAG
Found at i:37140847 original size:52 final size:52
Alignment explanation
Indices: 37140762--37140863 Score: 159
Period size: 52 Copynumber: 2.0 Consensus size: 52
37140752 GATCACATAG
* * * *
37140762 CTGTGTCTTACCCTGTGTAGCTCTCTGACGGGTCACACGGCCATCCACACGT
1 CTGTGTCCTACCCTGTGTAACTCTCTAACGGGTCACACGGCCAACCACACGT
*
37140814 CTGTGTCCTACCCTGTGTAACTCTCTAAGGGGTCACACGGCCAACCACAC
1 CTGTGTCCTACCCTGTGTAACTCTCTAACGGGTCACACGGCCAACCACAC
37140864 ACTTGTGTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 45 1.00
ACGTcount: A:0.19, C:0.35, G:0.22, T:0.25
Consensus pattern (52 bp):
CTGTGTCCTACCCTGTGTAACTCTCTAACGGGTCACACGGCCAACCACACGT
Found at i:37154925 original size:15 final size:15
Alignment explanation
Indices: 37154907--37154935 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
37154897 GCCTTTGGGC
37154907 CCCACATGAGAAAAT
1 CCCACATGAGAAAAT
37154922 CCCACATGAGAAAA
1 CCCACATGAGAAAA
37154936 CCAGACGGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.28, G:0.14, T:0.10
Consensus pattern (15 bp):
CCCACATGAGAAAAT
Found at i:37156542 original size:13 final size:13
Alignment explanation
Indices: 37156526--37156551 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37156516 TTGATTCCAA
37156526 AAGTGCTATGTTT
1 AAGTGCTATGTTT
37156539 AAGTGCTATGTTT
1 AAGTGCTATGTTT
37156552 TATGCTTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (13 bp):
AAGTGCTATGTTT
Found at i:37170706 original size:2 final size:2
Alignment explanation
Indices: 37170701--37170726 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
37170691 AATTGAAAAA
37170701 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
37170727 GAGGATATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:37175248 original size:22 final size:22
Alignment explanation
Indices: 37175223--37175265 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
37175213 TATCAAAAGC
*
37175223 GGAATTTTAAATACTT-AGTTTT
1 GGAAGTTTAAATA-TTAAGTTTT
*
37175245 GGAAGTTTGAATATTAAGTTT
1 GGAAGTTTAAATATTAAGTTT
37175266 AACCTCCTGC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.33, C:0.02, G:0.19, T:0.47
Consensus pattern (22 bp):
GGAAGTTTAAATATTAAGTTTT
Found at i:37183251 original size:38 final size:38
Alignment explanation
Indices: 37183195--37183317 Score: 194
Period size: 38 Copynumber: 3.3 Consensus size: 38
37183185 AGGCCCAGAT
* * *
37183195 ATAT-TTCCAGTACATAGCCTGCGGACCTCAAGTTCGG
1 ATATGTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
*
37183232 ATATGTTCCATCACGTAGCCTGCGGACCTCAAGTCCGG
1 ATATGTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
*
37183270 ATATGTTCCAGCACGTAGCCTGCGGACTTCAAGTCCGG
1 ATATGTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
37183308 ATATGTTCCA
1 ATATGTTCCA
37183318 AATACCATGC
Statistics
Matches: 79, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
37 4 0.05
38 75 0.95
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (38 bp):
ATATGTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
Found at i:37187435 original size:19 final size:19
Alignment explanation
Indices: 37187411--37187457 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
37187401 CTTTCTTTCT
37187411 TTTGCATT-CATTCCATACA
1 TTTGCATTACATTCCA-ACA
* *
37187430 TTTGCATTATATTGCAACA
1 TTTGCATTACATTCCAACA
37187449 TTTGCATTA
1 TTTGCATTA
37187458 AACTTTCACT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 20 0.80
20 5 0.20
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.45
Consensus pattern (19 bp):
TTTGCATTACATTCCAACA
Found at i:37190260 original size:6 final size:6
Alignment explanation
Indices: 37190249--37190275 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
37190239 GTTATATGGA
37190249 AAAGGC AAAGGC AAAGGC AAAGGC AAA
1 AAAGGC AAAGGC AAAGGC AAAGGC AAA
37190276 AAAAAACACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.56, C:0.15, G:0.30, T:0.00
Consensus pattern (6 bp):
AAAGGC
Found at i:37190290 original size:8 final size:8
Alignment explanation
Indices: 37190277--37190305 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
37190267 AAAGGCAAAA
37190277 AAAAACAC
1 AAAAACAC
37190285 AAAAACAC
1 AAAAACAC
37190293 AAAAACAC
1 AAAAACAC
37190301 AAAAA
1 AAAAA
37190306 AAACAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.79, C:0.21, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAACAC
Found at i:37190297 original size:9 final size:9
Alignment explanation
Indices: 37190276--37190315 Score: 57
Period size: 8 Copynumber: 4.7 Consensus size: 9
37190266 CAAAGGCAAA
37190276 AAAAAACAC
1 AAAAAACAC
37190285 -AAAAACAC
1 AAAAAACAC
37190293 -AAAAACAC
1 AAAAAACAC
*
37190301 AAAAAAAAC
1 AAAAAACAC
37190310 AAAAAA
1 AAAAAA
37190316 ATTCTAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
8 16 0.55
9 13 0.45
ACGTcount: A:0.82, C:0.17, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAACAC
Found at i:37191559 original size:66 final size:66
Alignment explanation
Indices: 37191459--37191585 Score: 227
Period size: 66 Copynumber: 1.9 Consensus size: 66
37191449 CATTCATATA
*
37191459 ATAACACATCTACTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACACATT
1 ATAACACATCTACTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
37191524 C
66 C
* *
37191525 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGACA
1 ATAACACATCTACTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACA
37191586 TAAGCATAGA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 58 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.35
Consensus pattern (66 bp):
ATAACACATCTACTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
C
Found at i:37191838 original size:43 final size:43
Alignment explanation
Indices: 37191649--37192634 Score: 535
Period size: 43 Copynumber: 22.6 Consensus size: 43
37191639 ATTCACAAGC
* * * *
37191649 CTTAAGCCCCTAAGCAATAGGGTAACAG-GCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGA-AGAT
* * * *
37191694 CTTAACCCCCTAAGTAGTAGGGAAACAGATCGAAGACGAAGGGT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAA-GAT
* * * * * *
37191738 CTTAAACCCCTAATCGGTAGGGTAACAGACCGAA-TTGTAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGAT
* * *
37191780 CTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGAT
* * **
37191823 CTTAACCCCCGAAGCAGTAGGG-AGACAGATCGAAGATGATGGG
1 CTTAACCCCCTAAGCAGTAGGGTA-ACAGATCGAAGATGAAGAT
* * * * *
37191866 CTTTAATCCCCTAAGCAGTAGGGTAACA-AGCCAA-ATTTACA-AGC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGA-TGA-AGA-T
* *
37191910 CTTAACCCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGA-AGAT
* * *
37191955 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAA-GAT
* * * * * * *
37191999 CTTAAACCCGTAATCGGTAGGGTAACAGACCGAA-TTGCAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGAT
* * * *
37192041 CTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGGAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGAT
* * * *
37192084 CTTAACCCCCTAAGTAGTAGGGAAACAGATCGAAGATGATGGGT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGA-AGAT
* * * * *
37192128 TTTAACCCCCTAAGCAGTAGGGTAACA-AGCCAA-ATTTACA-AGC
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGA-TGA-AGA-T
* * * * *
37192171 CTTAAACCCCTAAGCAGTAGGGTAACA-AGCCAA-ATTTACA-AGC
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGA-TGA-AGA-T
* *
37192214 CTTAACCCCCTAAGCAGTAGGGTAACAG-GCTGAAGACTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGA-AGAT
* * **
37192259 CTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGAT-AATGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAA-GAT
* * * *
37192302 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCAA-ATTTACA-AGC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGA-TGA-AGA-T
* * * * *
37192346 CTTAAACCCCTAAGCAGTAGGATAACTG-GCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGA-AGAT
* * ** * * **
37192391 CTTAGCCCCCTAAGCAGTAGGGAAACAGATAAAAAATGATGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGAT
* * * * *
37192434 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCGAA-TTTACAAAC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGA-TCGAAGATGA-AGAT
* * * *
37192478 CTTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACAAAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGA-AGAT
* * * * *
37192523 CTTAACCCCCTAACCAGTAGGGTAACAGGTTGAA-TTTATAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGA-AGAT
* * * * * **
37192566 CTTAACCCCTTAAGCAGTTGGGAAATAGATCGAAGATGATGGGC
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGA-AGAT
* *
37192610 CTTAAACCCCTAAGTAGTAGGGTAA
1 CTTAACCCCCTAAGCAGTAGGGTAA
37192635 TAGGCTGGAA
Statistics
Matches: 739, Mismatches: 158, Indels: 89
0.75 0.16 0.09
Matches are distributed among these distances:
42 63 0.09
43 296 0.40
44 198 0.27
45 176 0.24
46 6 0.01
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (43 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGAT
Found at i:37191888 original size:129 final size:129
Alignment explanation
Indices: 37191690--37192154 Score: 605
Period size: 129 Copynumber: 3.6 Consensus size: 129
37191680 GAAGATTTAC
* * *
37191690 AGATCTTAACCCCCTAAGTAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGG
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAAGCAG
37191755 TAGGGTAACAGACCGAATTGTAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGA
66 TAGGGTAACAGACCGAATTGTAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGA
* * * * *
37191819 AGATCTTAACCCCCGAAGCAGTAGGGAGACAGATCGAAGATGATGGG-CTTTAATCCCCTAAGCA
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTC-TTAAACCCCTAAGCA
* * * * * * *
37191883 GTAGGGTAACA-AGCCAAATT-TACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAG-GCTGAAG
65 GTAGGGTAACAGA-CCGAATTGTA-GA-TCTTATCTCCCTAAGCAGTAGGGAAACAGATC-GAAG
*
37191945 ATTTA
126 A-TGA
* * *
37191950 CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCGTAATCG
1 -AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAAGCA
* *
37192015 GTAGGGTAACAGACCGAATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGG
65 GTAGGGTAACAGACCGAATTGTAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGA
* * * * *
37192080 AGATCTTAACCCCCTAAGTAGTAGGGAAACAGATCGAAGATGATGGGTTTTAACCCCCTAAGCAG
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAAGCAG
37192145 TAGGGTAACA
66 TAGGGTAACA
37192155 AGCCAAATTT
Statistics
Matches: 283, Mismatches: 42, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
128 4 0.01
129 140 0.49
130 31 0.11
131 32 0.11
132 73 0.26
133 3 0.01
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (129 bp):
AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAAGCAG
TAGGGTAACAGACCGAATTGTAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGA
Found at i:37192114 original size:261 final size:261
Alignment explanation
Indices: 37191638--37192241 Score: 1025
Period size: 261 Copynumber: 2.3 Consensus size: 261
37191628 AGAATCAGTG
* * *
37191638 AATTCACAAGCCTTAAGCCCCTAAGCAATAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
1 AATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
*
37191703 CTAAGTAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGAC
66 CTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGAC
*
37191768 CGAATTGTAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCCC
131 CGAATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCCC
* *
37191833 GAAGCAGTAGGGAGACAGATCGAAGATGATGGGCTTTAATCCCCTAAGCAGTAGGGTAACAAGCC
196 GAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCC
37191898 A
261 A
*
37191899 AATTTACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
1 AATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
*
37191964 CTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCGTAATCGGTAGGGTAACAGAC
66 CTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGAC
*
37192029 CGAATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGGAGATCTTAACCCCC
131 CGAATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCCC
* * *
37192094 TAAGTAGTAGGGAAACAGATCGAAGATGATGGGTTTTAACCCCCTAAGCAGTAGGGTAACAAGCC
196 GAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCC
37192159 A
261 A
* * *
37192160 AATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAAGC-CAA-ATTTACA-AGCCTTAACCC
1 AATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGA-TCTTAACCC
*
37192222 CCTAAGCAGTAGGGTAACAG
65 CCTAAGCAGTAGGGAAACAG
37192242 GCTGAAGACT
Statistics
Matches: 325, Mismatches: 17, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
258 1 0.00
259 34 0.10
260 2 0.01
261 288 0.89
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (261 bp):
AATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
CTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGAC
CGAATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCCC
GAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCC
A
Found at i:37192309 original size:175 final size:177
Alignment explanation
Indices: 37192048--37192418 Score: 556
Period size: 175 Copynumber: 2.1 Consensus size: 177
37192038 GATCTTATCT
* ** *
37192048 CCCTAAGCAGTAGGGAAACA-GATCGAAGA--TGGAGATCTTAACCCCCTAAGTAGTAGGGAAAC
1 CCCTAAGCAGTAGGGAAACAGGCT-GAAGACTTACAGATCTTAACCCCCTAAGCAGTAGGGAAAC
* * *
37192110 AGATCGAAGATGATGGGTTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAGCCTTA
65 AGATCAAAGATAATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAGCCTTA
*
37192175 AACCCCTAAGCAGTAGGGTAACAAGC-CAA-ATTTACA-AGCCTTAACC
130 AACCCCTAAGCAGTAGGATAACAAGCTCAAGATTTACAGA-CCTTAACC
*
37192221 CCCTAAGCAGTAGGGTAACAGGCTGAAGACTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA
1 CCCTAAGCAGTAGGGAAACAGGCTGAAGACTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA
37192286 GATCAAAGATAATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAGCCTTAA
66 GATCAAAGATAATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAGCCTTAA
** * * *
37192351 ACCCCTAAGCAGTAGGATAACTGGCTGAAGATTTACAGATCTTAGCC
131 ACCCCTAAGCAGTAGGATAACAAGCTCAAGATTTACAGACCTTAACC
37192398 CCCTAAGCAGTAGGGAAACAG
1 CCCTAAGCAGTAGGGAAACAG
37192419 ATAAAAAATG
Statistics
Matches: 177, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
173 24 0.14
174 2 0.01
175 115 0.65
176 2 0.01
177 33 0.19
178 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (177 bp):
CCCTAAGCAGTAGGGAAACAGGCTGAAGACTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA
GATCAAAGATAATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAGCCTTAA
ACCCCTAAGCAGTAGGATAACAAGCTCAAGATTTACAGACCTTAACC
Found at i:37192339 original size:132 final size:132
Alignment explanation
Indices: 37192172--37192550 Score: 632
Period size: 132 Copynumber: 2.9 Consensus size: 132
37192162 TTTACAAGCC
* *
37192172 TTAAACCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAGCCTTAACCCCCTAAGCAGTAGGGT
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGT
* * *
37192237 AACAGGCTGAAGACTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATAATGGG
66 AACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAAATAATGGG
37192302 CT
131 CT
*
37192304 TTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAGCCTTAAACCCCTAAGCAGTAGGAT
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGT
* * *
37192369 AACTGGCTGAAGATTTACAGATCTTAGCCCCCTAAGCAGTAGGGAAACAGATAAAAAATGATGGG
66 AACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAAATAATGGG
37192434 CT
131 CT
* *
37192436 TTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACCTTAAACCCCTAAGCAGTAGGGT
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGT
* * *
37192501 AACAGGCTGAAGATTTACAAATCTTAACCCCCTAACCAGTAGGGTAACAG
66 AACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAG
37192551 GTTGAATTTA
Statistics
Matches: 230, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 230 1.00
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.20
Consensus pattern (132 bp):
TTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGT
AACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAAATAATGGG
CT
Found at i:37192490 original size:175 final size:174
Alignment explanation
Indices: 37191638--37192634 Score: 554
Period size: 175 Copynumber: 5.7 Consensus size: 174
37191628 AGAATCAGTG
* * *
37191638 AATTCACAAGCCTTAAGCCCCTAAGCAATAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
1 AATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAA-ATTTACAGATCTTAACCCC
* ** * * * * * *
37191703 CTAAGTAGTAGGGAAACAGATCGAAGACGAAGGG-TCTTAAACCCCTAATCGGTAGGGTAACAGA
65 CTAAGCAGTAGGGAAACAGATAAAAAATGATGGGCT-TTAACCCCCTAAGCAGTAGGGTAACAGA
* * * * * * *
37191767 CCGAATTG-T-AG-ATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGA
129 CC-AA-AGATAAGAACCTTAACCCCCTAAGCAGTAGGGTAACA-AGCCA
* * * * * * * **
37191813 AGA--T-GAAGATCTTAACCCCCGAAGCAGTAGGG-AGACA-GATCGAAGA-TGA-TGGGCTTTA
1 A-ATTTACAAG-CCTTAAACCCCTAAGCAGTAGGGTA-ACAGGCT-GAA-ATTTACAGATC-TTA
* * *** * * *** *
37191871 ATCCCCTAAGCAGTAGGGTAACA-AGCCAAATTTACAAGCCTTAACCCCCTAAGCAGTAGGGTAA
60 ACCCCCTAAGCAGTAGGGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAA
* ** * * * *
37191935 CAGGCTGAAGATTTACAG-ATCTTAACCCCCTAAGCAGTAGGGAAAC-AGATCG
125 CAGACCAAAGA--TA-AGAACCTTAACCCCCTAAGCAGTAGGGTAACAAG-CCA
* * * * * * * * * *
37191987 AA--GACGAAGGGTCTTAAACCCGTAATCGGTAGGGTAACAGACCG-AA-TTGCAGATCTTATCT
1 AATTTAC-AA--GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAATTTACAGATCTTAACC
** * * *
37192048 CCCTAAGCAGTAGGGAAACAGAT--CGAA-GATGGAGATCTTAACCCCCTAAGTAGTAGGGAAAC
63 CCCTAAGCAGTAGGGAAACAGATAAAAAATGATGG-GCT-TTAACCCCCTAAGCAGTAGGGTAAC
* * * ****
37192110 AGATCGAAGATGATGGGTTTTAACCCCCTAAGCAGTAGGGTAACAAGCCA
126 AGACCAAAGAT-AAGAACCTTAACCCCCTAAGCAGTAGGGTAACAAGCCA
* * *
37192160 AATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAAGC-CAAATTTACA-AGCCTTAACCCC
1 AATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAATTTACAGA-TCTTAACCCC
* * * * * * ** * *
37192223 CTAAGCAGTAGGGTAACAGGCTGAAGACTTA-CAGATCTTAACCCCCTAAGCAGTAGGGAAACAG
65 CTAAGCAGTAGGGAAACA-GATAAAAAATGATGGGCT-TTAACCCCCTAAGCAGTAGGGTAACAG
* ** *
37192287 ATCAAAGATAATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCA
128 ACCAAAGATAA-GAACCTTAACCCCCTAAGCAGTAGGGTAACAAGCCA
* * *
37192335 AATTTACAAGCCTTAAACCCCTAAGCAGTAGGATAACTGGCTGAAGATTTACAGATCTTAGCCCC
1 AATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAA-ATTTACAGATCTTAACCCC
37192400 CTAAGCAGTAGGGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACA-AG
65 CTAAGCAGTAGGGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAGA-
* ** * * *
37192464 CCGAATTTACA-AACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGA
129 CCAAAGATA-AGAACCTTAACCCCCTAAGCAGTAGGGTAACAAGC-CA
** * * * *
37192511 AGATTTACAAATCTTAACCCCCTAACCAGTAGGGTAACAGGTTG-AATTTATAGATCTTAACCCC
1 A-ATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAATTTACAGATCTTAACCCC
* * * ** * * * *
37192575 TTAAGCAGTTGGGAAATAGATCGAAGATGATGGGCCTTAAACCCCTAAGTAGTAGGGTAA
65 CTAAGCAGTAGGGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAA
37192635 TAGGCTGGAA
Statistics
Matches: 635, Mismatches: 144, Indels: 86
0.73 0.17 0.10
Matches are distributed among these distances:
170 1 0.00
171 1 0.00
172 65 0.10
173 93 0.15
174 89 0.14
175 245 0.39
176 67 0.11
177 73 0.11
178 1 0.00
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (174 bp):
AATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAATTTACAGATCTTAACCCCC
TAAGCAGTAGGGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAGACC
AAAGATAAGAACCTTAACCCCCTAAGCAGTAGGGTAACAAGCCA
Found at i:37192613 original size:132 final size:131
Alignment explanation
Indices: 37192129--37192653 Score: 507
Period size: 132 Copynumber: 4.0 Consensus size: 131
37192119 ATGATGGGTT
* *** ** * *
37192129 TTAACCCCCTAAGCAGTAGGGTAACA-AGCCAAATT-TACAAGCCTTAAACCCCTAAGCAGTAGG
1 TTAACCCCCTAAGCAGTAGGGAAACAGATAAAAATTATA-GGGCTTTAACCCCCTAAGCAGTAGG
* *
37192192 GTAACAAG-CC-AAATTTACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGACTTAC
65 G-AA-AAGACCGAAA-TTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTAC
*
37192255 AGATC
127 AAATC
* *
37192260 TTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATAAT-GGGCTTTAACCCCCTAAGCAGTAGG
1 TTAACCCCCTAAGCAGTAGGGAAACAGAT-AAAAATTATAGGGCTTTAACCCCCTAAGCAGTAGG
* *
37192324 GTAACAAG-CC-AAATTTACAAGCCTTAAACCCCTAAGCAGTAGGATAACTGGCTGAAGATTTAC
65 G-AA-AAGACCGAAA-TTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTAC
*
37192387 AGATC
127 AAATC
* *
37192392 TTAGCCCCCTAAGCAGTAGGGAAACAGATAAAAAATGAT-GGGCTTTAACCCCCTAAGCAGTAGG
1 TTAACCCCCTAAGCAGTAGGGAAACAGAT-AAAAATTATAGGGCTTTAACCCCCTAAGCAGTAGG
* *
37192456 GTAACAAG-CCGAATTTACAAACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACA
65 G-AA-AAGACCGAAATTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACA
37192520 AATC
128 AATC
* * * ** * ** * *
37192524 TTAACCCCCTAACCAGTAGGGTAACAGGTTGAATTTATAGATC-TTAACCCCTTAAGCAGTTGGG
1 TTAACCCCCTAAGCAGTAGGGAAACAGATAAAAATTATAGGGCTTTAACCCCCTAAGCAGTAGGG
* * *** * *
37192588 AAATAGATCGAAGATGATGGGCCTTAAACCCCTAAGTAGTAGGGTAATAGGCTGGAA-A-TTACA
66 AAA-AGACCGAA-ATTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACA
37192651 AAT
128 AAT
37192654 TTTTTTTTCC
Statistics
Matches: 341, Mismatches: 44, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
129 1 0.00
130 4 0.01
131 61 0.18
132 266 0.78
133 8 0.02
134 1 0.00
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.21
Consensus pattern (131 bp):
TTAACCCCCTAAGCAGTAGGGAAACAGATAAAAATTATAGGGCTTTAACCCCCTAAGCAGTAGGG
AAAAGACCGAAATTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAAT
C
Found at i:37192618 original size:88 final size:86
Alignment explanation
Indices: 37191647--37192650 Score: 502
Period size: 87 Copynumber: 11.5 Consensus size: 86
37191637 GAATTCACAA
* * *
37191647 GCCTTAAGCCCCTAAGCAATAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGTAGT
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTG-A-ATTTACAGATCTTAA-CCCCTAAGCAGT
* *
37191712 AGGGAAACAGATCGAAGACGAAGG
63 AGGGAAACAGATCGAAGATGATGG
* * * * * *
37191736 GTCTTAAACCCCTAATCGGTAGGGTAACAGACCGAATTGT--AGATCTTATCTCCCTAAGCAGTA
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATT-TACAGATCTTAAC-CCCTAAGCAGTA
*
37191799 GGGAAACAGATCGAAGATGA-AG
64 GGGAAACAGATCGAAGATGATGG
** * * * * * * **
37191821 ATCTTAACCCCCGAAGCAGTAGGG-AGACA-GATCGAAGATGA-TGGGCTTTAATCCCCTAAGCA
1 GCCTTAAACCCCTAAGCAGTAGGGTA-ACAGGCT-GAA-TTTACAGATC-TTAA-CCCCTAAGCA
* * * * ***
37191883 GTAGGGTAACA-AGCCAA-ATTTACAA
61 GTAGGGAAACAGATCGAAGA-TGATGG
*
37191908 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGT
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTG-A-ATTTACAGATCTTAA-CCCCTAAGCAGT
* *
37191973 AGGGAAACAGATCGAAGACGAAGG
63 AGGGAAACAGATCGAAGATGATGG
* * * * * * * *
37191997 GTCTTAAACCCGTAATCGGTAGGGTAACAGACCGAA-TTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAAC-CCCTAAGCAGTAG
37192061 GGAAACAGATCGAAGATG--GAG
65 GGAAACAGATCGAAGATGATG-G
** * * * * * * ** * *
37192082 ATCTTAACCCCCTAAGTAGTAGGGAAACA-GATCGAAGATGATGGGTTTTAACCCCCTAAGCAGT
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCT-GAA-TTTACAGATCTTAA-CCCCTAAGCAGT
* * * * ***
37192146 AGGGTAACA-AGCCAA-ATTTACAA
63 AGGGAAACAGATCGAAGA-TGATGG
* ** *
37192169 GCCTTAAACCCCTAAGCAGTAGGGTAACAAGCCAAATTTACA-AGCCTTAACCCCCTAAGCAGTA
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGA-TCTTAA-CCCCTAAGCAGTA
* * * **
37192233 GGGTAACAG-GCTGAAGACTTACAG
64 GGGAAACAGATC-GAAGA-TGATGG
** * * * * ** **
37192257 ATCTTAACCCCCTAAGCAGTAGGGAAACA-GATCAAAGATA-ATGGGCTTTAACCCCCTAAGCAG
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCT-GAATTTACA-GATC-TTAA-CCCCTAAGCAG
* * * * ***
37192320 TAGGGTAACA-AGCCAA-ATTTACAA
62 TAGGGAAACAGATCGAAGA-TGATGG
* * *
37192344 GCCTTAAACCCCTAAGCAGTAGGATAACTGGCTGAAGATTTACAGATCTTAGCCCCCTAAGCAGT
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTG-A-ATTTACAGATCTTA-ACCCCTAAGCAGT
** *
37192409 AGGGAAACAGATAAAAAATGATGG
63 AGGGAAACAGATCGAAGATGATGG
* * * * * *
37192433 GCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACCTTAAACCCCTAAGCAGTAG
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTT-AACCCCTAAGCAGTAG
* * * ***
37192498 GGTAACAG-GCTGAAGATTTACAA
65 GGAAACAGATC-GAAGA-TGATGG
** * * * * *
37192521 ATCTTAACCCCCTAACCAGTAGGGTAACAGGTTGAATTTATAGATCTTAACCCCTTAAGCAGTTG
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCC-TAAGCAGTAG
*
37192586 GGAAATAGATCGAAGATGATGG
65 GGAAACAGATCGAAGATGATGG
* * *
37192608 GCCTTAAACCCCTAAGTAGTAGGGTAATAGGCTGGAAATTACA
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCT-GAATTTACA
37192651 AATTTTTTTT
Statistics
Matches: 688, Mismatches: 178, Indels: 99
0.71 0.18 0.10
Matches are distributed among these distances:
84 2 0.00
85 56 0.08
86 123 0.18
87 205 0.30
88 170 0.25
89 129 0.19
90 3 0.00
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.21
Consensus pattern (86 bp):
GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCTAAGCAGTAGG
GAAACAGATCGAAGATGATGG
Found at i:37192772 original size:68 final size:68
Alignment explanation
Indices: 37192663--37192853 Score: 294
Period size: 68 Copynumber: 2.8 Consensus size: 68
37192653 TTTTTTTTTC
* * *
37192663 CCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG-AGGATCTTT
1 CCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCA-AACCTCT
37192727 TCTT
65 TCTT
*
37192731 CCTGAAATGGCATTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAGCAAACCTCTT
1 CCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCAAACCTCTT
37192796 CTT
66 CTT
* * * *
37192799 CCAGAAATGGCATTGGAGAGGCTAAAAGCCATAGTAGATCTCCTTGAAGTTTCAG
1 CCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG
37192854 TGGAAGAAGA
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
68 112 0.99
69 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (68 bp):
CCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCAAACCTCTT
CTT
Found at i:37193071 original size:44 final size:44
Alignment explanation
Indices: 37192965--37193868 Score: 1557
Period size: 44 Copynumber: 20.6 Consensus size: 44
37192955 GATTTCAGCA
* ** *
37192965 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAGATTTCAG-CA
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
*
37193008 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
* * * * *
37193052 TGGCATCCCTGTGCTTATAGGGAAC-GGATCGAAGATAGCAGA-T
1 TGGCATCCCTGTGCTTATAGGGAACAAG-TTGAAAACATCAGACT
* * * * * * ** *
37193095 CTGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAG-CA
1 -TGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ACATCAGACT
37193140 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
37193184 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
37193228 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
37193272 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
37193316 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
37193360 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
37193404 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
37193448 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
37193492 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
37193536 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
37193580 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
37193624 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
37193668 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
37193712 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
37193756 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
*
37193800 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
37193844 TGGCATCCCTGTGCTTATAGGGAAC
1 TGGCATCCCTGTGCTTATAGGGAAC
37193869 GGATCGAAGA
Statistics
Matches: 821, Mismatches: 32, Indels: 15
0.95 0.04 0.02
Matches are distributed among these distances:
43 46 0.06
44 768 0.94
45 7 0.01
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.25
Consensus pattern (44 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGACT
Found at i:37193160 original size:88 final size:88
Alignment explanation
Indices: 37192906--37193924 Score: 473
Period size: 88 Copynumber: 11.6 Consensus size: 88
37192896 AGGAGCAGAC
*
37192906 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCCAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
37192971 CCCTGTGCTTATAGGGAACAAGT
66 CCCTGTGCTTATAGGGAACAAGT
* ** * * * * * * **
37192994 TGAAGATTTCAG--CATGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ACATCAG-ATTTG
1 CGAAGATAGCAGATC-TGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAGCA--TG
*
37193054 GCATCCCTGTGCTTATAGGGAAC-GGAT
62 GCATCCCTGTGCTTATAGGGAACAAG-T
37193081 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
37193146 CCCTGTGCTTATAGGGAACAAGT
66 CCCTGTGCTTATAGGGAACAAGT
* * * * * * * * * * ** *
37193169 TGAAAACATCAGA-CTTGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ACATCAGACTTGG
1 CGAAGATAGCAGATC-TGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAG-CATGG
37193231 CATCCCTGTGCTTATAGGGAACAAGT
63 CATCCCTGTGCTTATAGGGAACAAGT
* * * * * * * * * * ** *
37193257 TGAAAACATCAGA-CTTGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ACATCAGACTTGG
1 CGAAGATAGCAGATC-TGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAG-CATGG
37193319 CATCCCTGTGCTTATAGGGAACAAGT
63 CATCCCTGTGCTTATAGGGAACAAGT
* * * * * * * * * * ** *
37193345 TGAAAACATCAGA-CTTGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ACATCAGACTTGG
1 CGAAGATAGCAGATC-TGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAG-CATGG
37193407 CATCCCTGTGCTTATAGGGAACAAGT
63 CATCCCTGTGCTTATAGGGAACAAGT
* * * * * * * * * * ** *
37193433 TGAAAACATCAGA-CTTGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ACATCAGACTTGG
1 CGAAGATAGCAGATC-TGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAG-CATGG
37193495 CATCCCTGTGCTTATAGGGAACAAGT
63 CATCCCTGTGCTTATAGGGAACAAGT
* * * * * * * * * * ** *
37193521 TGAAAACATCAGA-CTTGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ACATCAGACTTGG
1 CGAAGATAGCAGATC-TGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAG-CATGG
37193583 CATCCCTGTGCTTATAGGGAACAAGT
63 CATCCCTGTGCTTATAGGGAACAAGT
* * * * * * * * * * ** *
37193609 TGAAAACATCAGA-CTTGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ACATCAGACTTGG
1 CGAAGATAGCAGATC-TGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAG-CATGG
37193671 CATCCCTGTGCTTATAGGGAACAAGT
63 CATCCCTGTGCTTATAGGGAACAAGT
* * * * * * * * * * ** *
37193697 TGAAAACATCAGA-CTTGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ACATCAGACTTGG
1 CGAAGATAGCAGATC-TGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAG-CATGG
37193759 CATCCCTGTGCTTATAGGGAACAAGT
63 CATCCCTGTGCTTATAGGGAACAAGT
* * * * * * * * * * **
37193785 TGAAAACATCAGA-CTTGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ACATCAG-ATTTG
1 CGAAGATAGCAGATC-TGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAGCA--TG
*
37193846 GCATCCCTGTGCTTATAGGGAAC-GGAT
62 GCATCCCTGTGCTTATAGGGAACAAG-T
*
37193873 CGAAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGAT
37193925 AGCGGATATC
Statistics
Matches: 859, Mismatches: 52, Indels: 39
0.90 0.05 0.04
Matches are distributed among these distances:
85 1 0.00
86 8 0.01
87 68 0.08
88 770 0.90
89 11 0.01
90 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.25
Consensus pattern (88 bp):
CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
CCCTGTGCTTATAGGGAACAAGT
Found at i:37194303 original size:22 final size:22
Alignment explanation
Indices: 37194263--37194304 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
37194253 TGGCCACCCA
*
37194263 CCTTGGCCACCAACTCCACCAC
1 CCTTGGCCACCAACACCACCAC
37194285 CCTTGGCCACCTAA-ACCACC
1 CCTTGGCCACC-AACACCACC
37194305 CCAACCACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.24, C:0.52, G:0.10, T:0.14
Consensus pattern (22 bp):
CCTTGGCCACCAACACCACCAC
Done.