Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 108 of 235
Found at i:37198575 original size:29 final size:28
Alignment explanation
Indices: 37198539--37198610 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 28
37198529 TCATGAGATT
*
37198539 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGAGTTTAAA--GTACA
37198569 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGAGTTTAAAGTACA
37198596 TGGCACTAAGTGTGC
1 -GGCACTAAGTGTGC
37198611 ACGGTTGATT
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
27 5 0.13
29 34 0.87
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGAGTTTAAAGTACA
Found at i:37198770 original size:29 final size:29
Alignment explanation
Indices: 37198707--37198774 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
37198697 TAATCAACCG
37198707 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
37198736 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
37198765 CGCACACTTA
1 CGCACACTTA
37198775 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:37201555 original size:45 final size:44
Alignment explanation
Indices: 37201406--37201557 Score: 137
Period size: 45 Copynumber: 3.4 Consensus size: 44
37201396 CAAAATCCTG
* * * *
37201406 CAGATGGAATCTACCTCTAGCTGTGGATACACAACAAAAATCTCG
1 CAGATAGAATCTGCCTCTAACTGTGGATACACAAC-AAAATCTCA
* * * * *
37201451 TAGATACAATCTGCCT-TAAGATGTGAAAACACAACAAAATC-CTA
1 CAGATAGAATCTGCCTCTAA-CTGTGGATACACAACAAAATCTC-A
* * **
37201495 CAGTTAGAATTTGCCTCTAACTGTGGATGGACAACAAATATCTCA
1 CAGATAGAATCTGCCTCTAACTGTGGATACACAACAAA-ATCTCA
37201540 CAGATAGAATCTGCCTCT
1 CAGATAGAATCTGCCTCT
37201558 GGCTATGGGT
Statistics
Matches: 82, Mismatches: 20, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
43 1 0.01
44 33 0.40
45 47 0.57
46 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.25
Consensus pattern (44 bp):
CAGATAGAATCTGCCTCTAACTGTGGATACACAACAAAATCTCA
Found at i:37201685 original size:34 final size:33
Alignment explanation
Indices: 37201647--37201722 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 33
37201637 GTGGCATGCT
* *
37201647 TAGATCAATGTGATAACATTTAATGGGCTTATAA
1 TAGATCAAT-TGATAACAATTAATAGGCTTATAA
* * *
37201681 TAGATCAATTGGTAGCAATTAATATGCTTATAA
1 TAGATCAATTGATAACAATTAATAGGCTTATAA
37201714 TAGATCAAT
1 TAGATCAAT
37201723 ACGATAGTAC
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
33 28 0.76
34 9 0.24
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (33 bp):
TAGATCAATTGATAACAATTAATAGGCTTATAA
Found at i:37201710 original size:33 final size:34
Alignment explanation
Indices: 37201673--37201789 Score: 121
Period size: 33 Copynumber: 3.5 Consensus size: 34
37201663 CATTTAATGG
* *
37201673 GCTTATAATAGATCAAT-TGGTAGCAATTAATAT
1 GCTTATAATAGATCAATACGATAGCAATTAATAT
* *
37201706 GCTTATAATAGATCAATACGATAGTACTTAATAT
1 GCTTATAATAGATCAATACGATAGCAATTAATAT
** * * *
37201740 GCTTATAACCGGTC-ATACAATTGCAATTAATAT
1 GCTTATAATAGATCAATACGATAGCAATTAATAT
* *
37201773 GCTTATCATAAATCAAT
1 GCTTATAATAGATCAAT
37201790 TCAGTAGCAA
Statistics
Matches: 66, Mismatches: 16, Indels: 3
0.78 0.19 0.04
Matches are distributed among these distances:
33 41 0.62
34 25 0.38
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (34 bp):
GCTTATAATAGATCAATACGATAGCAATTAATAT
Found at i:37203729 original size:14 final size:14
Alignment explanation
Indices: 37203712--37203738 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37203702 ATTAATTTTT
37203712 TAATATTAAAATAA
1 TAATATTAAAATAA
37203726 TAATATTAAAATA
1 TAATATTAAAATA
37203739 GTGCAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
TAATATTAAAATAA
Found at i:37205504 original size:12 final size:13
Alignment explanation
Indices: 37205487--37205515 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
37205477 CAATCGATTC
37205487 TTTTATTTTT-AT
1 TTTTATTTTTAAT
37205499 TTTTATTTTTAAT
1 TTTTATTTTTAAT
37205512 TTTT
1 TTTT
37205516 GATGTTATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTATTTTTAAT
Found at i:37205744 original size:17 final size:17
Alignment explanation
Indices: 37205722--37205781 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
37205712 TGTATTTTTA
37205722 TATTAAATTTAAAATTT
1 TATTAAATTTAAAATTT
* *
37205739 TATTAAA-GTAATATTT
1 TATTAAATTTAAAATTT
*
37205755 TAATTAAAATTTATTAATTT
1 T-ATT-AAATTTA-AAATTT
*
37205775 TACTAAA
1 TATTAAA
37205782 ATTTGAGGAA
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
16 8 0.24
17 10 0.30
18 6 0.18
19 4 0.12
20 5 0.15
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (17 bp):
TATTAAATTTAAAATTT
Found at i:37209630 original size:27 final size:28
Alignment explanation
Indices: 37209596--37209678 Score: 100
Period size: 29 Copynumber: 3.0 Consensus size: 28
37209586 CCTTTGTTTC
* *
37209596 ACTT-TTTTCTTT-TTCTCACTT-TTGTT
1 ACTTCTTTTCTTTGTTCACAATTCTT-TT
37209622 ACTTCTTTTCCTTTGTTCACAATTCTTTT
1 ACTTCTTTT-CTTTGTTCACAATTCTTTT
37209651 ACTTCTTTTCCTTTGTTCACAATTCTTT
1 ACTTCTTTT-CTTTGTTCACAATTCTTT
37209679 CATCACTCTA
Statistics
Matches: 51, Mismatches: 2, Indels: 5
0.88 0.03 0.09
Matches are distributed among these distances:
26 4 0.08
27 4 0.08
28 4 0.08
29 37 0.73
30 2 0.04
ACGTcount: A:0.12, C:0.23, G:0.04, T:0.61
Consensus pattern (28 bp):
ACTTCTTTTCTTTGTTCACAATTCTTTT
Found at i:37209652 original size:29 final size:29
Alignment explanation
Indices: 37209620--37209678 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
37209610 CTCACTTTTG
37209620 TTACTTCTTTTCCTTTGTTCACAATTCTT
1 TTACTTCTTTTCCTTTGTTCACAATTCTT
37209649 TTACTTCTTTTCCTTTGTTCACAATTCTT
1 TTACTTCTTTTCCTTTGTTCACAATTCTT
37209678 T
1 T
37209679 CATCACTCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.14, C:0.24, G:0.03, T:0.59
Consensus pattern (29 bp):
TTACTTCTTTTCCTTTGTTCACAATTCTT
Found at i:37218805 original size:40 final size:40
Alignment explanation
Indices: 37218773--37219793 Score: 1546
Period size: 40 Copynumber: 25.6 Consensus size: 40
37218763 CCAGCATGAT
* * * *
37218773 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
37218813 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
37218853 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
37218893 TGCTCTTTGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
37218933 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
37218973 TGCTCTTTGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
37219013 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
37219053 TGCTCTTTGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
37219093 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
37219133 TGCTCTTTGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
37219173 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
37219213 TGCTCTTTGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
37219253 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
37219293 TGCTCTTTGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
37219333 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
37219373 TGCTCTTTGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
37219413 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
37219453 TGCTCTTTGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
37219493 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
37219533 TGCTCTTTGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
37219573 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
37219613 TGCTCTTTGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
37219653 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
37219693 TGCTCTTCGGGACTTAGCCCGGTTATAGTAACTA-CACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
* ** * * *
37219733 TGC-CTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
37219773 TGC-CTTCGGG-CTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
37219794 ATTAGTAACT
Statistics
Matches: 895, Mismatches: 84, Indels: 5
0.91 0.09 0.01
Matches are distributed among these distances:
39 36 0.04
40 854 0.95
41 5 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:37219753 original size:39 final size:40
Alignment explanation
Indices: 37219691--37219872 Score: 178
Period size: 39 Copynumber: 4.6 Consensus size: 40
37219681 CACTAGCATG
37219691 AATGCTCTTCGGGACTTAGCCCGGTTATAGTAACT-ACACA
1 AATGC-CTTCGGGACTTAGCCCGGTTATAGTAACTCACACA
* * *
37219731 AATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCACACA
* *
37219771 AATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCACACA
* * * * * *
37219810 AATGCCTTC-GGATCTTAGTCCTGATATGGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAGCCCGGTTATAGTAACTCA-CACA
37219851 AA-GCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
37219873 ACATCATTCG
Statistics
Matches: 118, Mismatches: 15, Indels: 18
0.78 0.10 0.12
Matches are distributed among these distances:
38 2 0.02
39 56 0.47
40 50 0.42
41 10 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACA
Found at i:37219775 original size:80 final size:80
Alignment explanation
Indices: 37218773--37219755 Score: 1781
Period size: 80 Copynumber: 12.3 Consensus size: 80
37218763 CCAGCATGAT
* * * * * * * ** *
37218773 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATA
*
37218838 TATCACTAGCACGAA
66 CATCACTAGCACGAA
37218853 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATA
37218918 CATCACTAGCACGAA
66 CATCACTAGCACGAA
37218933 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATA
37218998 CATCACTAGCACGAA
66 CATCACTAGCACGAA
37219013 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATA
37219078 CATCACTAGCACGAA
66 CATCACTAGCACGAA
37219093 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATA
37219158 CATCACTAGCACGAA
66 CATCACTAGCACGAA
37219173 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATA
37219238 CATCACTAGCACGAA
66 CATCACTAGCACGAA
37219253 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATA
37219318 CATCACTAGCACGAA
66 CATCACTAGCACGAA
37219333 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATA
37219398 CATCACTAGCACGAA
66 CATCACTAGCACGAA
37219413 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATA
37219478 CATCACTAGCACGAA
66 CATCACTAGCACGAA
37219493 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATA
37219558 CATCACTAGCACGAA
66 CATCACTAGCACGAA
37219573 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATA
37219638 CATCACTAGCACGAA
66 CATCACTAGCACGAA
* *
37219653 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTTA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATA
* * *
37219718 TAGTAACTA-CACAAA
66 CA-TCACTAGCACGAA
* *
37219733 TGC-CTTCGGGACTTAACCCGGAT
1 TGCTCTTCGGAACTTAGCCCGGAT
37219756 TTAGTAACTC
Statistics
Matches: 884, Mismatches: 18, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
79 18 0.02
80 861 0.97
81 5 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATA
CATCACTAGCACGAA
Found at i:37220221 original size:29 final size:29
Alignment explanation
Indices: 37220181--37220259 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
37220171 CTTAATAATC
*
37220181 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
**
37220211 AACTTGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
37220240 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
37220260 ATCTCACAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
28 3 0.07
29 36 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:37250381 original size:42 final size:44
Alignment explanation
Indices: 37250335--37250432 Score: 121
Period size: 44 Copynumber: 2.3 Consensus size: 44
37250325 CAGATAGGGT
*
37250335 CTTACAC-AAAATCA-AA-TACGATGCCGATATCCCAGACATGGC
1 CTTACACGAAAATCATAAGT-CGATGCCAATATCCCAGACATGGC
* * * *
37250377 CTTACACGTAAATCATAAGTCGATGCCAATGTCCTAGACATGGT
1 CTTACACGAAAATCATAAGTCGATGCCAATATCCCAGACATGGC
37250421 CTTACACGAAAA
1 CTTACACGAAAA
37250433 CACATATCGG
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
42 7 0.15
43 6 0.13
44 33 0.70
45 1 0.02
ACGTcount: A:0.37, C:0.26, G:0.15, T:0.22
Consensus pattern (44 bp):
CTTACACGAAAATCATAAGTCGATGCCAATATCCCAGACATGGC
Found at i:37250390 original size:43 final size:42
Alignment explanation
Indices: 37250278--37250428 Score: 137
Period size: 43 Copynumber: 3.5 Consensus size: 42
37250268 CAATGCCAAC
* * *
37250278 ATCCCAGACGTGGTCTTACATGT-AATCAAATATCAATGCCATT
1 ATCCCAGACATGGTCTTACACGTAAATCAAATA-CGATGCCA-T
* * * *
37250321 GTCCCAGATAGGGTCTTACAC-AAAATCAAATACGATGCCGAT
1 ATCCCAGACATGGTCTTACACGTAAATCAAATACGATGCC-AT
*
37250363 ATCCCAGACATGGCCTTACACGTAAATCATAAGT-CGATGCCAAT
1 ATCCCAGACATGGTCTTACACGTAAATCA-AA-TACGATGCC-AT
* *
37250407 GTCCTAGACATGGTCTTACACG
1 ATCCCAGACATGGTCTTACACG
37250429 AAAACACATA
Statistics
Matches: 87, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
42 24 0.28
43 32 0.37
44 30 0.34
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.25
Consensus pattern (42 bp):
ATCCCAGACATGGTCTTACACGTAAATCAAATACGATGCCAT
Found at i:37255851 original size:35 final size:37
Alignment explanation
Indices: 37255805--37255882 Score: 119
Period size: 35 Copynumber: 2.2 Consensus size: 37
37255795 ATAATCTTCA
37255805 ATGATATGCAATCTTAGATATGATA-CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATATCAATCTTAGAT
*
37255841 ATGAT-TGCAATCTTAGATATGATATGAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATATCAATCTTAGAT
37255876 A-GATATG
1 ATGATATG
37255883 ATTTTGTAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
34 3 0.08
35 22 0.56
36 14 0.36
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGATATCAATCTTAGAT
Found at i:37255853 original size:18 final size:19
Alignment explanation
Indices: 37255805--37255875 Score: 114
Period size: 18 Copynumber: 3.9 Consensus size: 19
37255795 ATAATCTTCA
37255805 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
37255824 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
37255841 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
37255859 ATGATATG-AATCTTAGA
1 ATGATATGCAATCTTAGA
37255876 AGATATGATT
Statistics
Matches: 49, Mismatches: 0, Indels: 7
0.88 0.00 0.12
Matches are distributed among these distances:
17 16 0.33
18 25 0.51
19 8 0.16
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:37255881 original size:21 final size:23
Alignment explanation
Indices: 37255855--37255898 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
37255845 TTGCAATCTT
37255855 AGATATGA-TATG-AATCTTAGA
1 AGATATGATTATGTAATCTTAGA
*
37255876 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
37255899 GATTTAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 8 0.40
22 3 0.15
23 9 0.45
ACGTcount: A:0.39, C:0.05, G:0.18, T:0.39
Consensus pattern (23 bp):
AGATATGATTATGTAATCTTAGA
Found at i:37262707 original size:19 final size:19
Alignment explanation
Indices: 37262667--37262725 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 19
37262657 ATTTCAAAAA
*
37262667 AAAAAG-GAAAAAGAAGAG
1 AAAAAGAGAAAAAAAAGAG
* *
37262685 AAAAAGAGAAAAAAAATAT
1 AAAAAGAGAAAAAAAAGAG
*
37262704 AAAAATA-AAAAAAAA-AG
1 AAAAAGAGAAAAAAAAGAG
37262721 AAAAA
1 AAAAA
37262726 TGGAGAGGCC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
17 6 0.17
18 14 0.40
19 15 0.43
ACGTcount: A:0.81, C:0.00, G:0.14, T:0.05
Consensus pattern (19 bp):
AAAAAGAGAAAAAAAAGAG
Found at i:37264398 original size:200 final size:200
Alignment explanation
Indices: 37263666--37265220 Score: 2488
Period size: 205 Copynumber: 7.7 Consensus size: 200
37263656 GCAGATCTGG
* * *
37263666 CTGAAGCAAGATCCAAGATAGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCT
1 CTGAAGC-ATATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* * * *
37263731 GATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAGACGATTTGGCATCTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * *
37263796 AGAACAAATCGAAGTTTTGCATCTCCATTTCAACGGAGAGCAGATACATAGTAGATCTAACCTTC
130 AGAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTC
37263861 AGATGTTTATA
195 AGATG-----A
* *
37263872 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTATGCTTACAAGGAACAAATCGAAGACATAGCTG
1 CTGAAGCATATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* *
37263937 ATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTCAAA
66 ATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * * * *
37264002 TAACAAATCGAAGTCCGGCATCTCCATTTCGGCGAAGAGTAGATACATAGCAGATCTAAGCTTCA
131 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
37264067 GATGTTTATA
196 GATG-----A
* *
37264077 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCATATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
37264142 ATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* *
37264207 GAACAAATCGAAGTCTGGCATCTCCATTTCAACAGAGAGCAGATACATAGCAGATCTAACCTTCA
131 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
37264272 GATGA
196 GATGA
*
37264277 CTGAAGCATATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCATATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
*
37264342 ATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTAGA
66 ATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
*
37264407 GAACAAATTGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
131 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
37264472 GATGA
196 GATGA
*
37264477 CTGAAGCATATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
1 CTGAAGCATATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
37264542 ATTTGGCTTTCACGTGTTTACGCTGAAG----TCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* *
37264603 GAACAAATCGAAGTCTGGCATCTCCATTTCAACAGAGAGCAGATACATAGCAGATCTAACCTTCA
131 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
37264668 GATGA
196 GATGA
37264673 CTGAAGCATATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
1 CTGAAGCATATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
*
37264738 ATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTAGA
66 ATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* *
37264803 GAACAAATTGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATGTAACCTTCA
131 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
37264868 GATGTTTATA
196 GATG-----A
* * *
37264878 CTGAATCAAATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
1 CTGAAGCATATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * * *
37264943 ATTTGGCTTTCATGTGCTTATGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* *
37265008 GAGCAAATCAAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
131 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
37265073 GATGA
196 GATGA
*
37265078 CTGAAGCATATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGGCATAGCTG
1 CTGAAGCATATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * * * *
37265143 ATTTGGTTTTCGCGTGCTTATGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTAGA
66 ATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
*
37265208 GAACAAATTGAAG
131 GAACAAATCGAAG
37265221 AAACAGATTT
Statistics
Matches: 1268, Mismatches: 72, Indels: 24
0.93 0.05 0.02
Matches are distributed among these distances:
196 191 0.15
200 516 0.41
205 554 0.44
206 7 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (200 bp):
CTGAAGCATATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
GATGA
Found at i:37265542 original size:261 final size:256
Alignment explanation
Indices: 37265052--37265570 Score: 691
Period size: 261 Copynumber: 2.0 Consensus size: 256
37265042 GAGAGCAGAT
* *
37265052 ACATAGCAGATCTAACCTTCAGATGACTGAAGCATATCCAAGATGGTTTGGCATCCTTGTGCTTA
1 ACATAGCAGATCTAACCTTCAGATGACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTA
* * * * * * *
37265117 CAAGGAACAAATCGAAGGCATAGCTGATTTGGTTTTCGCGTGCTTATGCTGAAGCAAATCTAAGA
66 CAAGGAACAAATCGAAGACACAGCAGATTTGGCTTTCACGTGATTACGCTGAAGCAAATCTAAGA
* * * * *
37265182 TGATTTGGCATCTCTGTATTGTTAGAGAACAAATTGAAGAAACAGATTTGGCGTCTCTGTATTCG
131 TGATTTGGCATCTCTGTATTGTCAAAAAACAAATCGAAGAAACAGATTTGGCGTCTCTATATTCG
* *
37265247 GCGGAGAGCAGATCGAAGATATCAACAGGACAGTCATAAGTTTACAA-GAAGCAGATTAAAG
196 ACGGAGAGCAGATCAAAGATATCAACAGGACAGTCATAAGTTTACAATG-AGCAGATTAAAG
* *
37265308 ACATAGCAGATCTGACCTTCAGATGATTTTACTGAAGTAGATCCAAGATGATTTGGCATCCTTGT
1 ACATAGCAGATCTAACCTTCAGATG-----ACTGAAGCAGATCCAAGATGATTTGGCATCCTTGT
* *
37265373 G-TTCACAAGGAGCAAATCGAAGACACAGCAGATTTGGCTTTCACGTGATTACGCTGAAGCAGAT
61 GCTT-ACAAGGAACAAATCGAAGACACAGCAGATTTGGCTTTCACGTGATTACGCTGAAGCAAAT
* *
37265437 CTAAGATGATTTGGCATCTCTGTATTGTCAAAAAATAAATCGAAGAAGCAGATTTGGCGTCTCTA
125 CTAAGATGATTTGGCATCTCTGTATTGTCAAAAAACAAATCGAAGAAACAGATTTGGCGTCTCTA
* * * * * * * *
37265502 TGTTCGATGGAGAGCAGATCAAAGATATTAACATGACAGTCTTGAGTTTCCAATGAGCAGATTGA
190 TATTCGACGGAGAGCAGATCAAAGATATCAACAGGACAGTCATAAGTTTACAATGAGCAGATTAA
37265567 AG
255 AG
37265569 AC
1 AC
37265571 CATGATTCGA
Statistics
Matches: 226, Mismatches: 30, Indels: 9
0.85 0.11 0.03
Matches are distributed among these distances:
256 24 0.11
260 2 0.01
261 199 0.88
262 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (256 bp):
ACATAGCAGATCTAACCTTCAGATGACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTA
CAAGGAACAAATCGAAGACACAGCAGATTTGGCTTTCACGTGATTACGCTGAAGCAAATCTAAGA
TGATTTGGCATCTCTGTATTGTCAAAAAACAAATCGAAGAAACAGATTTGGCGTCTCTATATTCG
ACGGAGAGCAGATCAAAGATATCAACAGGACAGTCATAAGTTTACAATGAGCAGATTAAAG
Found at i:37265882 original size:17 final size:17
Alignment explanation
Indices: 37265857--37265954 Score: 115
Period size: 17 Copynumber: 5.5 Consensus size: 17
37265847 CAATGATATG
*
37265857 CAATATTAGATATGATA
1 CAATCTTAGATATGATA
* *
37265874 CAATCTTAGAAATGATTG
1 CAATCTTAGATATGA-TA
37265892 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
37265909 TGCAATCTTAGATATGATA
1 --CAATCTTAGATATGATA
*
37265928 CAATCTTATATATGATA
1 CAATCTTAGATATGATA
37265945 TGCAATCTTA
1 --CAATCTTA
37265955 AAAGATATGA
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
17 30 0.43
18 15 0.21
19 25 0.36
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:37265908 original size:54 final size:55
Alignment explanation
Indices: 37265849--37265954 Score: 178
Period size: 54 Copynumber: 1.9 Consensus size: 55
37265839 ATAATCTTCA
37265849 ATGATATGCAATATTAGATATGATACAATCTTAGAAATGAT-TGCAATCTTAGAT
1 ATGATATGCAATATTAGATATGATACAATCTTAGAAATGATATGCAATCTTAGAT
* * *
37265903 ATGATATGCAATCTTAGATATGATACAATCTTATATATGATATGCAATCTTA
1 ATGATATGCAATATTAGATATGATACAATCTTAGAAATGATATGCAATCTTA
37265955 AAAGATATGA
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
54 38 0.79
55 10 0.21
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (55 bp):
ATGATATGCAATATTAGATATGATACAATCTTAGAAATGATATGCAATCTTAGAT
Found at i:37265963 original size:17 final size:19
Alignment explanation
Indices: 37265849--37265954 Score: 150
Period size: 19 Copynumber: 5.8 Consensus size: 19
37265839 ATAATCTTCA
*
37265849 ATGATATGCAATATTAGAT
1 ATGATATGCAATCTTAGAT
*
37265868 ATGATA--CAATCTTAGAA
1 ATGATATGCAATCTTAGAT
37265885 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
37265903 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
37265922 ATGATA--CAATCTTATAT
1 ATGATATGCAATCTTAGAT
37265939 ATGATATGCAATCTTA
1 ATGATATGCAATCTTA
37265955 AAAGATATGA
Statistics
Matches: 78, Mismatches: 4, Indels: 10
0.85 0.04 0.11
Matches are distributed among these distances:
17 30 0.38
18 15 0.19
19 33 0.42
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:37266179 original size:40 final size:40
Alignment explanation
Indices: 37266135--37266213 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 40
37266125 GCATTCACTC
37266135 AAATTTCTCTCCCTCTTACGTTCTTACTCTCTGTGGTTTG
1 AAATTTCTCTCCCTCTTACGTTCTTACTCTCTGTGGTTTG
* *
37266175 AAATTTCTCTCCTTCTTGCGTTCTTACTCTCTGTGGTTT
1 AAATTTCTCTCCCTCTTACGTTCTTACTCTCTGTGGTTT
37266214 ATTCTTATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.11, C:0.27, G:0.13, T:0.49
Consensus pattern (40 bp):
AAATTTCTCTCCCTCTTACGTTCTTACTCTCTGTGGTTTG
Found at i:37268424 original size:29 final size:27
Alignment explanation
Indices: 37268363--37268436 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 27
37268353 CAAAGAAAAC
37268363 AAAATAAAATAAAAAGGAAAAATAAAT
1 AAAATAAAATAAAAAGGAAAAATAAAT
**
37268390 AGAAATAAAATGAAAAAGGATCTAATGAAA-
1 A-AAATAAAAT-AAAAAGGA-AAAAT-AAAT
37268420 AAAATAAAATAAAAAGG
1 AAAATAAAATAAAAAGG
37268437 TCCCTAGTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
27 1 0.02
28 16 0.39
29 17 0.41
30 4 0.10
31 3 0.07
ACGTcount: A:0.72, C:0.01, G:0.12, T:0.15
Consensus pattern (27 bp):
AAAATAAAATAAAAAGGAAAAATAAAT
Found at i:37270502 original size:29 final size:29
Alignment explanation
Indices: 37270459--37270517 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
37270449 CATCAGAACA
*
37270459 ATTGATTCCGTAGGTAGAGACATAAATAT
1 ATTGATTCCGCAGGTAGAGACATAAATAT
*
37270488 ATTGATTCTGCAGGTAGAGACATAAATAT
1 ATTGATTCCGCAGGTAGAGACATAAATAT
37270517 A
1 A
37270518 CTCATTGGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.39, C:0.10, G:0.20, T:0.31
Consensus pattern (29 bp):
ATTGATTCCGCAGGTAGAGACATAAATAT
Found at i:37273274 original size:30 final size:30
Alignment explanation
Indices: 37273240--37273335 Score: 104
Period size: 30 Copynumber: 3.2 Consensus size: 30
37273230 ATTTATCTAG
*
37273240 ATATTAAAATGAGATATTAAATTTAATTTA
1 ATATTAATATGAGATATTAAATTTAATTTA
* * * **
37273270 ATATTTATCT-AGATAGTATTTTATTAATTTA
1 ATATTAATATGAGATATTA-AAT-TTAATTTA
*
37273301 ATATTAATATGAGATATTTAATTTAATTTA
1 ATATTAATATGAGATATTAAATTTAATTTA
37273331 ATATT
1 ATATT
37273336 TATCTTGGCA
Statistics
Matches: 51, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
29 7 0.14
30 21 0.41
31 17 0.33
32 6 0.12
ACGTcount: A:0.43, C:0.01, G:0.06, T:0.50
Consensus pattern (30 bp):
ATATTAATATGAGATATTAAATTTAATTTA
Found at i:37273297 original size:31 final size:29
Alignment explanation
Indices: 37273262--37273366 Score: 111
Period size: 31 Copynumber: 3.4 Consensus size: 29
37273252 GATATTAAAT
*
37273262 TTAATTTAATATTTATCTAGATAGTATTTTA
1 TTAATTTAATATTTATCT-GACA-TATTTTA
* * * *
37273293 TTAATTTAATATTAATATGAGATATTTAA
1 TTAATTTAATATTTATCTGACATATTTTA
*
37273322 TTTAATTTAATATTTATCTTGGCAATATTTTA
1 -TTAATTTAATATTTATC-TGAC-ATATTTTA
37273354 TTAATTTAATATT
1 TTAATTTAATATT
37273367 AATGTGATTA
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
29 6 0.10
30 18 0.29
31 31 0.50
32 7 0.11
ACGTcount: A:0.37, C:0.03, G:0.06, T:0.54
Consensus pattern (29 bp):
TTAATTTAATATTTATCTGACATATTTTA
Found at i:37273313 original size:61 final size:61
Alignment explanation
Indices: 37273240--37273369 Score: 206
Period size: 61 Copynumber: 2.1 Consensus size: 61
37273230 ATTTATCTAG
* * *
37273240 ATATTAAAATGAGATATTAAATTTAATTTAATATTTATCTAGATAGTATTTTATTAATTTA
1 ATATTAATATGAGATATTAAATTTAATTTAATATTTATCTAGACAATATTTTATTAATTTA
* * *
37273301 ATATTAATATGAGATATTTAATTTAATTTAATATTTATCTTGGCAATATTTTATTAATTTA
1 ATATTAATATGAGATATTAAATTTAATTTAATATTTATCTAGACAATATTTTATTAATTTA
37273362 ATATTAAT
1 ATATTAAT
37273370 GTGATTAATT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
61 63 1.00
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.51
Consensus pattern (61 bp):
ATATTAATATGAGATATTAAATTTAATTTAATATTTATCTAGACAATATTTTATTAATTTA
Found at i:37278861 original size:18 final size:18
Alignment explanation
Indices: 37278840--37278882 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
37278830 TGTATCATCA
37278840 ACCTCAAATATACCCTCC
1 ACCTCAAATATACCCTCC
37278858 ACCTCAAATATACCCTCC
1 ACCTCAAATATACCCTCC
37278876 ACCTCAA
1 ACCTCAA
37278883 TTTTATCAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.35, C:0.44, G:0.00, T:0.21
Consensus pattern (18 bp):
ACCTCAAATATACCCTCC
Found at i:37279429 original size:6 final size:6
Alignment explanation
Indices: 37279420--37279451 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
37279410 AAATAACTTT
37279420 TTATAA TTATAA TTATAA TTATAA TTATAA TT
1 TTATAA TTATAA TTATAA TTATAA TTATAA TT
37279452 GTTATTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (6 bp):
TTATAA
Found at i:37283287 original size:17 final size:17
Alignment explanation
Indices: 37283265--37283299 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
37283255 AACCACCAAC
37283265 ACACCAGATTGTGGTTT
1 ACACCAGATTGTGGTTT
37283282 ACACCAGATTGTGGTTT
1 ACACCAGATTGTGGTTT
37283299 A
1 A
37283300 ACTACCAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (17 bp):
ACACCAGATTGTGGTTT
Found at i:37286085 original size:44 final size:46
Alignment explanation
Indices: 37286036--37286190 Score: 167
Period size: 46 Copynumber: 3.4 Consensus size: 46
37286026 ATGCCGATGC
* * *
37286036 CATGTCTTACACTAGCTTA-A-CTCGTAGTC-GATGCATGTCTCAGA
1 CATGTCTTACACTAGCTTACATCTCG-AGGCTGATGCATGTCCCAAA
*
37286080 CATGTCTTACACTGGCTTACATCTCGAGGCTGATGCATGTCCCAAA
1 CATGTCTTACACTAGCTTACATCTCGAGGCTGATGCATGTCCCAAA
* * *
37286126 CATGTCTTACACTAGCTCT-CGTCTC-ACTGCCGATGACATGTCCCAAA
1 CATGTCTTACACTAGCT-TACATCTCGA-GGCTGATG-CATGTCCCAAA
37286173 CATGGTCTTACACTAGCT
1 CAT-GTCTTACACTAGCT
37286191 CTCGTAATGT
Statistics
Matches: 96, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
44 18 0.19
45 5 0.05
46 44 0.46
47 15 0.16
48 14 0.15
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (46 bp):
CATGTCTTACACTAGCTTACATCTCGAGGCTGATGCATGTCCCAAA
Found at i:37304927 original size:47 final size:47
Alignment explanation
Indices: 37304876--37305015 Score: 192
Period size: 47 Copynumber: 3.0 Consensus size: 47
37304866 GATTTTATGA
37304876 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
**
37304923 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * * * * *
37304970 GATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTAATG
1 GATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCAATG
37305016 CGAAATGTGT
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 79 0.96
48 3 0.04
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.26
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:37305045 original size:46 final size:46
Alignment explanation
Indices: 37304989--37305217 Score: 386
Period size: 46 Copynumber: 5.0 Consensus size: 46
37304979 GGAAGTGTAT
* *
37304989 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
37305035 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
37305081 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* *
37305127 ATATGAGGTAAAACCGAATGGCTAATGAGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* * **
37305173 ATATGAGGTAAAGCCGAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
37305218 TGTATATATA
Statistics
Matches: 174, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 174 1.00
ACGTcount: A:0.35, C:0.09, G:0.32, T:0.24
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:37307554 original size:55 final size:53
Alignment explanation
Indices: 37307429--37307826 Score: 357
Period size: 55 Copynumber: 7.5 Consensus size: 53
37307419 AACTTACCAT
* * *
37307429 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTACCTTAT-GAACTCACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTA-CCTTTCCTTATAGAACTCATCAA
* * *
37307482 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGTAACTCATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTACC-TTTCCTTATAG-AACTCATCAA
* * * * *
37307537 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATAAA
1 TGCCATGTCTTGACATGGTCTTACATG-GTACCTTTCCTTATAGAACTCATCAA
* * * ***
37307591 TGCCATGCCTTGGCATGGTCTTACAT-G-A--TATCCTTATCTTAC-CA--AA
1 TGCCATGTCTTGACATGGTCTTACATGGTACCTTTCCTTATAGAACTCATCAA
*** * *
37307637 TGCCATGTTCCAAACATGGTATTACATGGTATCCTTGT-CTTAT-GAACTCACCAA
1 TGCCATG-TCTTGACATGGTCTTACATGGTA-CCTT-TCCTTATAGAACTCATCAA
* *
37307691 TGCCATGTCTTGACATGGTCTTACTTGGGACCTTTTCCTTATAGCAACTCATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTACC-TTTCCTTATAG-AACTCATCAA
* * * * * *
37307746 TGCCATGTCTTGAAATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATAAA
1 TGCCATGTCTTGACATGGTCTTACATG-GTACCTTTCCTTATAGAACTCATCAA
*
37307800 TGCCATGCCTTGACATGGTCTTACATG
1 TGCCATGTCTTGACATGGTCTTACATG
37307827 ATATCCTTAT
Statistics
Matches: 276, Mismatches: 50, Indels: 37
0.76 0.14 0.10
Matches are distributed among these distances:
46 9 0.03
47 13 0.05
48 2 0.01
49 10 0.04
51 2 0.01
52 13 0.05
53 59 0.21
54 76 0.28
55 88 0.32
56 4 0.01
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGGTACCTTTCCTTATAGAACTCATCAA
Found at i:37307616 original size:54 final size:54
Alignment explanation
Indices: 37307429--37307834 Score: 379
Period size: 54 Copynumber: 7.6 Consensus size: 54
37307419 AACTTACCAT
* * * * *
37307429 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTACCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
* ** *
37307482 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTTCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAA
* * * *
37307537 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATAAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
* **
37307591 TGCCATGCCTTGGCATGGTCTTACATGATATCCTTATC-T-T---AC-CA--AA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
** * * * *
37307637 TGCCATGTTCC-AAACATGGTATTACATGGTATCCTTGTCTTAT-GAACTCACCAA
1 TGCCATG--CCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
* * ** *
37307691 TGCCATGTCTTGACATGGTCTTACTTGGGA-CCTTTTCCTTATAGCAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAA
* * * * *
37307746 TGCCATGTCTTGAAATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATAAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
37307800 TGCCATGCCTTGACATGGTCTTACATGATATCCTT
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTT
37307835 ATCTTACCAA
Statistics
Matches: 289, Mismatches: 46, Indels: 35
0.78 0.12 0.09
Matches are distributed among these distances:
46 9 0.03
47 22 0.08
48 4 0.01
49 3 0.01
51 2 0.01
52 8 0.03
53 57 0.20
54 92 0.32
55 88 0.30
56 4 0.01
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
Found at i:37307801 original size:209 final size:209
Alignment explanation
Indices: 37307441--37307887 Score: 795
Period size: 209 Copynumber: 2.1 Consensus size: 209
37307431 CCATGTCTTG
* ** *
37307441 ACATGGTCTTACGTGGTATCCTTACCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTAC
1 ACATGGTCTTACATGGTATCCTTGTCTTATGAACTCACCAATGCCATGCCTTGACATGGTCTTAC
* *
37307506 ATGGGACCTTTTCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCT
66 ATGGGACCTTTTCCTTATAGCAACTCATCAATGCCATGTCTTGAAATGGTCTTACATGATTTCCT
*
37307571 TGCCTTATAGAACTTATAAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACCAA
131 TGCCTTATAGAACTTATAAATGCCATGCCTTGACATGGTCTTACATGATATCCTTATCTTACCAA
37307636 ATGCCATGTTCCAA
196 ATGCCATGTTCCAA
* *
37307650 ACATGGTATTACATGGTATCCTTGTCTTATGAACTCACCAATGCCATGTCTTGACATGGTCTTAC
1 ACATGGTCTTACATGGTATCCTTGTCTTATGAACTCACCAATGCCATGCCTTGACATGGTCTTAC
*
37307715 TTGGGACCTTTTCCTTATAGCAACTCATCAATGCCATGTCTTGAAATGGTCTTACATGATTTCCT
66 ATGGGACCTTTTCCTTATAGCAACTCATCAATGCCATGTCTTGAAATGGTCTTACATGATTTCCT
37307780 TGCCTTATAGAACTTATAAATGCCATGCCTTGACATGGTCTTACATGATATCCTTATCTTACCAA
131 TGCCTTATAGAACTTATAAATGCCATGCCTTGACATGGTCTTACATGATATCCTTATCTTACCAA
*
37307845 ATGTCATGTTCCAA
196 ATGCCATGTTCCAA
37307859 ACATGGTCTTACATGGTATCCTTGTCTTA
1 ACATGGTCTTACATGGTATCCTTGTCTTA
37307888 CCAAATGCCA
Statistics
Matches: 226, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
209 226 1.00
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (209 bp):
ACATGGTCTTACATGGTATCCTTGTCTTATGAACTCACCAATGCCATGCCTTGACATGGTCTTAC
ATGGGACCTTTTCCTTATAGCAACTCATCAATGCCATGTCTTGAAATGGTCTTACATGATTTCCT
TGCCTTATAGAACTTATAAATGCCATGCCTTGACATGGTCTTACATGATATCCTTATCTTACCAA
ATGCCATGTTCCAA
Found at i:37307865 original size:47 final size:47
Alignment explanation
Indices: 37307812--37307934 Score: 210
Period size: 47 Copynumber: 2.6 Consensus size: 47
37307802 CCATGCCTTG
* * *
37307812 ACATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAA
1 ACATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAA
37307859 ACATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAA
1 ACATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAA
*
37307906 ACATGGTCTTACATGGTAGCCTTGTCTTA
1 ACATGGTCTTACATGGTATCCTTGTCTTA
37307935 GTGCCAATGC
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.36
Consensus pattern (47 bp):
ACATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAA
Found at i:37327607 original size:55 final size:53
Alignment explanation
Indices: 37327482--37327879 Score: 366
Period size: 55 Copynumber: 7.5 Consensus size: 53
37327472 AACTTACCAT
* * *
37327482 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTA-CCTTTCCTTATAGAACTCATCAA
* * *
37327535 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGTAACTCATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTACC-TTTCCTTATAG-AACTCATCAA
* * * *
37327590 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATG-GTACCTTTCCTTATAGAACTCATCAA
* * * ***
37327644 TGCCATGCCTTGGCATGGTCTTACAT-G-A--TATCCTTATCTTAC-CA--AA
1 TGCCATGTCTTGACATGGTCTTACATGGTACCTTTCCTTATAGAACTCATCAA
*** * *
37327690 TGCCATGTTCCAAACATGGTATTACATGGTATCCTTGT-CTTAT-GAACTCACCAA
1 TGCCATG-TCTTGACATGGTCTTACATGGTA-CCTT-TCCTTATAGAACTCATCAA
* *
37327744 TGCCATGTCTTGACATGGTCTTACTTGGGACCTTTTCCTTATAGCAACTCATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTACC-TTTCCTTATAG-AACTCATCAA
* * * * * *
37327799 TGCCATGTCTTGAAATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATAAA
1 TGCCATGTCTTGACATGGTCTTACATG-GTACCTTTCCTTATAGAACTCATCAA
*
37327853 TGCCATGCCTTGACATGGTCTTACATG
1 TGCCATGTCTTGACATGGTCTTACATG
37327880 ATATCCTTAT
Statistics
Matches: 277, Mismatches: 49, Indels: 37
0.76 0.13 0.10
Matches are distributed among these distances:
46 9 0.03
47 13 0.05
48 2 0.01
49 10 0.04
51 2 0.01
52 13 0.05
53 59 0.21
54 77 0.28
55 88 0.32
56 4 0.01
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.36
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGGTACCTTTCCTTATAGAACTCATCAA
Found at i:37327666 original size:54 final size:54
Alignment explanation
Indices: 37327471--37327887 Score: 383
Period size: 54 Copynumber: 7.9 Consensus size: 54
37327461 TTTCCTTTTT
* * * * *
37327471 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* ** *
37327524 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTTCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATA
* * *
37327578 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * * **
37327633 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATC-T-T-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
** * * *
37327684 --AC-CA--AATGCCATGTTCC-AAACATGGTATTACATGGTATCCTTGTCTTAT-
1 GAACTCACCAATGCCATG--CCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * ** *
37327733 GAACTCACCAATGCCATGTCTTGACATGGTCTTACTTGGGA-CCTTTTCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATA
* * * *
37327787 GCAACTCATCAATGCCATGTCTTGAAATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* **
37327842 GAACTTATAAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
37327888 ATCTTACCAA
Statistics
Matches: 299, Mismatches: 47, Indels: 35
0.78 0.12 0.09
Matches are distributed among these distances:
46 9 0.03
47 22 0.07
48 4 0.01
49 3 0.01
51 2 0.01
52 8 0.03
53 66 0.22
54 93 0.31
55 88 0.29
56 4 0.01
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
Found at i:37327857 original size:209 final size:209
Alignment explanation
Indices: 37327494--37327940 Score: 786
Period size: 209 Copynumber: 2.1 Consensus size: 209
37327484 CCATGTCTTG
* * *
37327494 ACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTAC
1 ACATGGTCTTACATGGTATCCTTGTCTTATGAACTCACCAATGCCATGCCTTGACATGGTCTTAC
* *
37327559 ATGGGACCTTTTCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCT
66 ATGGGACCTTTTCCTTATAGCAACTCATCAATGCCATGTCTTGAAATGGTCTTACATGATTTCCT
* *
37327624 TGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACCAA
131 TGCCTTATAGAACTTATAAATGCCATGCCTTGACATGGTCTTACATGATATCCTTATCTTACCAA
37327689 ATGCCATGTTCCAA
196 ATGCCATGTTCCAA
* *
37327703 ACATGGTATTACATGGTATCCTTGTCTTATGAACTCACCAATGCCATGTCTTGACATGGTCTTAC
1 ACATGGTCTTACATGGTATCCTTGTCTTATGAACTCACCAATGCCATGCCTTGACATGGTCTTAC
*
37327768 TTGGGACCTTTTCCTTATAGCAACTCATCAATGCCATGTCTTGAAATGGTCTTACATGATTTCCT
66 ATGGGACCTTTTCCTTATAGCAACTCATCAATGCCATGTCTTGAAATGGTCTTACATGATTTCCT
37327833 TGCCTTATAGAACTTATAAATGCCATGCCTTGACATGGTCTTACATGATATCCTTATCTTACCAA
131 TGCCTTATAGAACTTATAAATGCCATGCCTTGACATGGTCTTACATGATATCCTTATCTTACCAA
*
37327898 ATGTCATGTTCCAA
196 ATGCCATGTTCCAA
*
37327912 ACATGGTCTTACATGATATCCTTGTCTTA
1 ACATGGTCTTACATGGTATCCTTGTCTTA
37327941 CCAAATGCCA
Statistics
Matches: 225, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
209 225 1.00
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (209 bp):
ACATGGTCTTACATGGTATCCTTGTCTTATGAACTCACCAATGCCATGCCTTGACATGGTCTTAC
ATGGGACCTTTTCCTTATAGCAACTCATCAATGCCATGTCTTGAAATGGTCTTACATGATTTCCT
TGCCTTATAGAACTTATAAATGCCATGCCTTGACATGGTCTTACATGATATCCTTATCTTACCAA
ATGCCATGTTCCAA
Found at i:37327918 original size:47 final size:47
Alignment explanation
Indices: 37327865--37327987 Score: 210
Period size: 47 Copynumber: 2.6 Consensus size: 47
37327855 CCATGCCTTG
* *
37327865 ACATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAA
1 ACATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAA
37327912 ACATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAA
1 ACATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAA
* *
37327959 ACATGGTCTTACATGGTAGCCTTGTCTTA
1 ACATGGTCTTACATGATATCCTTGTCTTA
37327988 GTGCCAATGC
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.36
Consensus pattern (47 bp):
ACATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAA
Found at i:37328020 original size:48 final size:47
Alignment explanation
Indices: 37327959--37328070 Score: 129
Period size: 46 Copynumber: 2.4 Consensus size: 47
37327949 CATGTTCCAA
** *
37327959 ACATGGTCTTACATGGTAG-CCTTGTCTTAGTGCCAATGCCACATCTTG
1 ACATGGTCTTACATGGTAGTCC-T-TAATAATGCCAATGCCACATCTTG
* * **
37328007 ATATGGTCTTACATGG-AGTCCTTAATAATGCCGATGCCATGTCTTG
1 ACATGGTCTTACATGGTAGTCCTTAATAATGCCAATGCCACATCTTG
37328053 ACATGGTCTTACATGGTA
1 ACATGGTCTTACATGGTA
37328071 TCATTAACCG
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
46 33 0.61
47 4 0.07
48 17 0.31
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.34
Consensus pattern (47 bp):
ACATGGTCTTACATGGTAGTCCTTAATAATGCCAATGCCACATCTTG
Found at i:37336547 original size:27 final size:27
Alignment explanation
Indices: 37336506--37336559 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
37336496 TGTCATGTGA
* *
37336506 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
37336533 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
37336560 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:37344406 original size:48 final size:48
Alignment explanation
Indices: 37344279--37344593 Score: 164
Period size: 48 Copynumber: 6.8 Consensus size: 48
37344269 TGGTTAATGA
*
37344279 GATCCCGTGTAAAACCATGTCTGGGACAT-GCAATCGGCATCAAGATGT
1 GATCCCGTATAAAACCATGTCTGGGACATGGCAATCGGCATC-AGATGT
* * ** * * *
37344327 GATCCCGTATAAGACCATATCAAGGATATGGC-TTCGGCATC-GTTGAAT
1 GATCCCGTATAAAACCATGTCTGGGACATGGCAATCGGCATCAGATG--T
** * * *
37344375 GATTTCGTATAAAACCATGTCTGGGACATGGC-AT-TG--TTA-A-GA
1 GATCCCGTATAAAACCATGTCTGGGACATGGCAATCGGCATCAGATGT
* * * *
37344417 GATCCCGTATAAGACCATGTCTGGGACATGGC-AT-TG--TTA-A-GA
1 GATCCCGTATAAAACCATGTCTGGGACATGGCAATCGGCATCAGATGT
* * *
37344459 GATCCCGTATAAGACCATGTCTGGGACATGGC-ATCGACATCAGTATGA
1 GATCCCGTATAAAACCATGTCTGGGACATGGCAATCGGCATCAG-ATGT
* * * * * **
37344507 GATCCCATGTAAGACCATATCTGGGATATGGC-ATTTGCATC-GATGT
1 GATCCCGTATAAAACCATGTCTGGGACATGGCAATCGGCATCAGATGT
* * * *
37344553 GAGGTACTGTATAAGACCATGGCTGGGACATGGC-ATCGGCA
1 GA--TCCCGTATAAAACCATGTCTGGGACATGGCAATCGGCA
37344594 CCAATATGAG
Statistics
Matches: 212, Mismatches: 43, Indels: 24
0.76 0.15 0.09
Matches are distributed among these distances:
42 73 0.34
44 1 0.00
45 3 0.01
46 8 0.04
47 3 0.01
48 122 0.58
49 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (48 bp):
GATCCCGTATAAAACCATGTCTGGGACATGGCAATCGGCATCAGATGT
Found at i:37344427 original size:42 final size:42
Alignment explanation
Indices: 37344380--37344492 Score: 217
Period size: 42 Copynumber: 2.7 Consensus size: 42
37344370 TGAATGATTT
*
37344380 CGTATAAAACCATGTCTGGGACATGGCATTGTTAAGAGATCC
1 CGTATAAGACCATGTCTGGGACATGGCATTGTTAAGAGATCC
37344422 CGTATAAGACCATGTCTGGGACATGGCATTGTTAAGAGATCC
1 CGTATAAGACCATGTCTGGGACATGGCATTGTTAAGAGATCC
37344464 CGTATAAGACCATGTCTGGGACATGGCAT
1 CGTATAAGACCATGTCTGGGACATGGCAT
37344493 CGACATCAGT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (42 bp):
CGTATAAGACCATGTCTGGGACATGGCATTGTTAAGAGATCC
Found at i:37344520 original size:90 final size:84
Alignment explanation
Indices: 37344380--37344541 Score: 207
Period size: 90 Copynumber: 1.9 Consensus size: 84
37344370 TGAATGATTT
* * *
37344380 CGTATAAAACCATGTCTGGGACATGGCATTGTTAAGAGATCCCGTATAAGACCATGTCTGGGACA
1 CGTATAAAACCATGTCTGGGACATGGCATCGTTAAGAGATCCCATATAAGACCATATCTGGGACA
37344445 TGGCATTGTTAAGAGATCC
66 TGGCATTGTTAAGAGATCC
* * *
37344464 CGTATAAGACCATGTCTGGGACATGGCATCGACATCAGTATGAGATCCCATGTAAGACCATATCT
1 CGTATAAAACCATGTCTGGGACATGGCATCG---T---TAAGAGATCCCATATAAGACCATATCT
*
37344529 GGGATATGGCATT
60 GGGACATGGCATT
37344542 TGCATCGATG
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
84 29 0.45
87 1 0.02
90 35 0.54
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.26
Consensus pattern (84 bp):
CGTATAAAACCATGTCTGGGACATGGCATCGTTAAGAGATCCCATATAAGACCATATCTGGGACA
TGGCATTGTTAAGAGATCC
Found at i:37344613 original size:48 final size:48
Alignment explanation
Indices: 37344464--37344638 Score: 158
Period size: 48 Copynumber: 3.6 Consensus size: 48
37344454 TAAGAGATCC
* * * *
37344464 CGTATAAGACCATGTCTGGGACATGGCATCGACATCAGTATGAGA-TCC
1 CGTATAAGACCATATCTGGGACATGGCATCGGCATCAATATGAGACT-T
* * * ** * *
37344512 CATGTAAGACCATATCTGGGATATGGCATTTGCATCGATGTGAGGTAC-T
1 CGTATAAGACCATATCTGGGACATGGCATCGGCATCAATATGA-G-ACTT
** *
37344561 -GTATAAGACCATGGCTGGGACATGGCATCGGCACCAATATGAGACTT
1 CGTATAAGACCATATCTGGGACATGGCATCGGCATCAATATGAGACTT
* *
37344608 CGTATAAGACCATATCTAGGATATGGCATCG
1 CGTATAAGACCATATCTGGGACATGGCATCG
37344639 ATATGTGGTC
Statistics
Matches: 97, Mismatches: 25, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
46 2 0.02
47 2 0.02
48 91 0.94
49 1 0.01
50 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (48 bp):
CGTATAAGACCATATCTGGGACATGGCATCGGCATCAATATGAGACTT
Found at i:37352334 original size:42 final size:42
Alignment explanation
Indices: 37352287--37352495 Score: 229
Period size: 42 Copynumber: 4.7 Consensus size: 42
37352277 TGAATGATTT
*
37352287 CGTATAAAACCATGTCTGGGACATGGCATTGTTAAGAGATCC
1 CGTATAAGACCATGTCTGGGACATGGCATTGTTAAGAGATCC
37352329 CGTATAAGACCATGTCTGGGACATGGCATTGTTAAGAGATCC
1 CGTATAAGACCATGTCTGGGACATGGCATTGTTAAGAGATCC
* *
37352371 CGTATAAGACCATGTCTGGGACATGGCATCGGCATCAATATGAGATCC
1 CGTATAAGACCATGTCTGGGACATGGCAT-TG--T---TAAGAGATCC
* * * * * *
37352419 CATGTAAGACCATATCTGGGATATGGCATTAGTATCGATGTGAGGTCC
1 CGTATAAGACCATGTCTGGGACATGGCATT-GT-T--A--AGAGATCC
37352467 CGTATAAGACCATGTCTGGGACATGGCAT
1 CGTATAAGACCATGTCTGGGACATGGCAT
37352496 CGGCACCGAT
Statistics
Matches: 143, Mismatches: 13, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
42 70 0.49
43 1 0.01
44 2 0.01
45 1 0.01
46 2 0.01
48 67 0.47
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (42 bp):
CGTATAAGACCATGTCTGGGACATGGCATTGTTAAGAGATCC
Found at i:37352519 original size:48 final size:48
Alignment explanation
Indices: 37352182--37352545 Score: 274
Period size: 48 Copynumber: 7.8 Consensus size: 48
37352172 ACCATGGTTA
* * * * *
37352182 ATGAGATCCCGTGTAAAACCATGTCTGGGACAT-GCAATCGGCATCAAG
1 ATGAGATCCCGTATAAGACCATATCTGGGACATGGC-ATCGGCATCGAT
* ** * *
37352230 ATGTGATCCCGTATAAGACCATATCAAGGATATGGCTTCGGCATCG-T
1 ATGAGATCCCGTATAAGACCATATCTGGGACATGGCATCGGCATCGAT
** * * *
37352277 -TGAATGATTTCGTATAAAACCATGTCTGGGACATGGCAT-----T-GTT
1 ATG-A-GATCCCGTATAAGACCATATCTGGGACATGGCATCGGCATCGAT
* * *
37352320 AAGAGATCCCGTATAAGACCATGTCTGGGACATGGCAT-----T-GTT
1 ATGAGATCCCGTATAAGACCATATCTGGGACATGGCATCGGCATCGAT
* * *
37352362 AAGAGATCCCGTATAAGACCATGTCTGGGACATGGCATCGGCATCAAT
1 ATGAGATCCCGTATAAGACCATATCTGGGACATGGCATCGGCATCGAT
* * * ** *
37352410 ATGAGATCCCATGTAAGACCATATCTGGGATATGGCATTAGTATCGAT
1 ATGAGATCCCGTATAAGACCATATCTGGGACATGGCATCGGCATCGAT
* * * *
37352458 GTGAGGTCCCGTATAAGACCATGTCTGGGACATGGCATCGGCACCGAT
1 ATGAGATCCCGTATAAGACCATATCTGGGACATGGCATCGGCATCGAT
* * *
37352506 ATGAGA-CTTCGTATAAGACCATATCTGGGATATGGTATCG
1 ATGAGATC-CCGTATAAGACCATATCTGGGACATGGCATCG
37352546 ATATGTGGTT
Statistics
Matches: 254, Mismatches: 50, Indels: 24
0.77 0.15 0.07
Matches are distributed among these distances:
42 74 0.29
43 3 0.01
44 1 0.00
46 2 0.01
47 2 0.01
48 170 0.67
49 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (48 bp):
ATGAGATCCCGTATAAGACCATATCTGGGACATGGCATCGGCATCGAT
Found at i:37353858 original size:44 final size:44
Alignment explanation
Indices: 37353795--37353953 Score: 146
Period size: 43 Copynumber: 3.7 Consensus size: 44
37353785 TATGTGTTAT
* * *
37353795 CGTGTAAGACCACATCTGGGACGTTGGCATCGATTTTTTATTTA
1 CGTGTAAGACCACATCTGGGACATTGGCATCGATATTTGATTTA
** * * *
37353839 CGTGTAAGACCATGTCTGGGACGTTGGCGTCG-TATATGATTT-
1 CGTGTAAGACCACATCTGGGACATTGGCATCGATATTTGATTTA
** * * *
37353881 CGTGTAAGACTC-TGTCTAGGACAATGGCATTGATATTTGA-TTA
1 CGTGTAAGAC-CACATCTGGGACATTGGCATCGATATTTGATTTA
* *
37353924 CATGTAAGATCACATCTGGGACATTGGCAT
1 CGTGTAAGACCACATCTGGGACATTGGCAT
37353954 TGTACGAGCT
Statistics
Matches: 93, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
42 28 0.30
43 36 0.39
44 29 0.31
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (44 bp):
CGTGTAAGACCACATCTGGGACATTGGCATCGATATTTGATTTA
Found at i:37355407 original size:54 final size:54
Alignment explanation
Indices: 37355338--37355455 Score: 182
Period size: 54 Copynumber: 2.2 Consensus size: 54
37355328 ATGGTCACGC
* *
37355338 ACACACGGGCGTGTGCCAGACCGTACGACCAAGTCAGTTTCGACCACGGGCTAG
1 ACACACGGGCATGTGCCAGACCGTACGACCAAGTCAGTTTCGACCACGAGCTAG
* ** *
37355392 ACACATGGGCATGTGCCAGACCGTGTGGCCAAGTCAGTTTCGACCACGAGCTAG
1 ACACACGGGCATGTGCCAGACCGTACGACCAAGTCAGTTTCGACCACGAGCTAG
37355446 ACACACGGGC
1 ACACACGGGC
37355456 GTGTCTTGTG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.25, C:0.31, G:0.30, T:0.15
Consensus pattern (54 bp):
ACACACGGGCATGTGCCAGACCGTACGACCAAGTCAGTTTCGACCACGAGCTAG
Found at i:37362914 original size:18 final size:18
Alignment explanation
Indices: 37362857--37362915 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
37362847 TAGCCTATTT
* *
37362857 CAGTAACAGAAATTAGTG
1 CAGTAACAGTAATCAGTG
* *
37362875 CAGTAACCA-TGATCAATG
1 CAGTAA-CAGTAATCAGTG
*
37362893 CAGTAACAGTAATCAGTT
1 CAGTAACAGTAATCAGTG
37362911 CAGTA
1 CAGTA
37362916 TGCAAGCAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
17 2 0.06
18 28 0.88
19 2 0.06
ACGTcount: A:0.41, C:0.17, G:0.19, T:0.24
Consensus pattern (18 bp):
CAGTAACAGTAATCAGTG
Found at i:37363199 original size:23 final size:23
Alignment explanation
Indices: 37363173--37363222 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
37363163 ACCCCATGCA
37363173 ATGCAACATA-ATATTATACATGG-
1 ATGCAACATACATA-TA-ACATGGC
37363196 ATGCAACATACATATAACATGGC
1 ATGCAACATACATATAACATGGC
37363219 ATGC
1 ATGC
37363223 TCAAATACAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 16 0.64
24 3 0.12
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (23 bp):
ATGCAACATACATATAACATGGC
Found at i:37363307 original size:27 final size:27
Alignment explanation
Indices: 37363258--37363373 Score: 99
Period size: 27 Copynumber: 4.3 Consensus size: 27
37363248 AACAAATATT
* * * * *
37363258 TCATTTTACCTTACCGGGTTATTACAG
1 TCATTTTACCCTACAGGGGTATTTCGG
*
37363285 TCATTTTACCCTACAGGGGTATTTTGG
1 TCATTTTACCCTACAGGGGTATTTCGG
* ** *
37363312 TCATTCTACCCTATGGGGGTGTTTCGG
1 TCATTTTACCCTACAGGGGTATTTCGG
**
37363339 TCATTTTACCCT-GTGAGGGTATTTCGG
1 TCATTTTACCCTACAG-GGGTATTTCGG
*
37363366 ACATTTTA
1 TCATTTTA
37363374 TCACATAAGA
Statistics
Matches: 72, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
26 1 0.01
27 71 0.99
ACGTcount: A:0.18, C:0.20, G:0.22, T:0.41
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTTCGG
Found at i:37368305 original size:79 final size:78
Alignment explanation
Indices: 37368203--37368425 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
37368193 GCTCCTCGTT
* *
37368203 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
37368268 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
37368283 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
37368347 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
37368361 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
37368424 GA
63 GA
37368426 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
78 45 0.36
79 60 0.48
80 20 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:37368320 original size:39 final size:40
Alignment explanation
Indices: 37368203--37368425 Score: 280
Period size: 39 Copynumber: 5.7 Consensus size: 40
37368193 GCTCCTCGTT
* *
37368203 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
37368243 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
37368283 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
37368322 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
37368361 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
37368402 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37368426 CATCATTCAA
Statistics
Matches: 167, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 88 0.53
40 67 0.40
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:37372169 original size:48 final size:48
Alignment explanation
Indices: 37372116--37372287 Score: 193
Period size: 48 Copynumber: 3.6 Consensus size: 48
37372106 GTGTGAGTAT
* *
37372116 TGAGATCCCATATAAGACCATTTCTGGGATATCGCATCGGCATCAATA
1 TGAGATCCCATATAAGACCATGTCTGGGATATAGCATCGGCATCAATA
* * * * * * *
37372164 GGAGATCCCATGTAAGACCATATTTGGGATATGGCATTGGCATTAATA
1 TGAGATCCCATATAAGACCATGTCTGGGATATAGCATCGGCATCAATA
* * * *
37372212 TGAGGTCCCACATAAGACCATGTCTGGGACATAGCATCGGCA-CCATA
1 TGAGATCCCATATAAGACCATGTCTGGGATATAGCATCGGCATCAATA
** *
37372259 TGAGATTTCATGTAAGACCATGTCTGGGA
1 TGAGATCCCATATAAGACCATGTCTGGGA
37372288 CATGGCTTTG
Statistics
Matches: 101, Mismatches: 23, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
47 27 0.27
48 74 0.73
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (48 bp):
TGAGATCCCATATAAGACCATGTCTGGGATATAGCATCGGCATCAATA
Found at i:37372323 original size:42 final size:42
Alignment explanation
Indices: 37372263--37372491 Score: 173
Period size: 42 Copynumber: 5.4 Consensus size: 42
37372253 ACCATATGAG
*
37372263 ATTTCATGTAAGACCATGTCTGGGACATGGCTTTGATATAAT
1 ATTTCCTGTAAGACCATGTCTGGGACATGGCTTTGATATAAT
* * *
37372305 ATTTCCTGTAAGATCATGTCTGGGACATGGCATTGATACAAT
1 ATTTCCTGTAAGACCATGTCTGGGACATGGCTTTGATATAAT
* *
37372347 A-TTCCGTGTAAGACCATAG-CTGGG-CTATTGGCATCTG-TATGAT
1 ATTTCC-TGTAAGACCAT-GTCTGGGAC-A-TGGC-TTTGATATAAT
* * * * * * *
37372390 ATTACGTGTAAGACCATGTCTGGGACATGGCATCGTTATGAG
1 ATTTCCTGTAAGACCATGTCTGGGACATGGCTTTGATATAAT
* * * *
37372432 ATTTCGTGTAAGACCATAG-CTAGG-CTATTGGCTTCGATATGAT
1 ATTTCCTGTAAGACCAT-GTCTGGGAC-A-TGGCTTTGATATAAT
* *
37372475 ATTACATGTAAGACCAT
1 ATTTCCTGTAAGACCAT
37372492 ATTCGAGATA
Statistics
Matches: 153, Mismatches: 22, Indels: 23
0.77 0.11 0.12
Matches are distributed among these distances:
41 7 0.05
42 86 0.56
43 55 0.36
44 5 0.03
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.33
Consensus pattern (42 bp):
ATTTCCTGTAAGACCATGTCTGGGACATGGCTTTGATATAAT
Found at i:37372398 original size:43 final size:43
Alignment explanation
Indices: 37372345--37372492 Score: 178
Period size: 43 Copynumber: 3.5 Consensus size: 43
37372335 CATTGATACA
*
37372345 ATATTCCGTGTAAGACCATAGCTGGGCTATTGGCATCTG-TATG
1 ATATTACGTGTAAGACCATAGCTGGGCTATTGGCATC-GATATG
*
37372388 ATATTACGTGTAAGACCAT-GTCTGGGAC-A-TGGCATCGTTATG
1 ATATTACGTGTAAGACCATAG-CTGGG-CTATTGGCATCGATATG
* * * *
37372430 AGATTTCGTGTAAGACCATAGCTAGGCTATTGGCTTCGATATG
1 ATATTACGTGTAAGACCATAGCTGGGCTATTGGCATCGATATG
*
37372473 ATATTACATGTAAGACCATA
1 ATATTACGTGTAAGACCATA
37372493 TTCGAGATAT
Statistics
Matches: 90, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
41 2 0.02
42 34 0.38
43 53 0.59
44 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.32
Consensus pattern (43 bp):
ATATTACGTGTAAGACCATAGCTGGGCTATTGGCATCGATATG
Found at i:37372408 original size:85 final size:85
Alignment explanation
Indices: 37372297--37372491 Score: 257
Period size: 85 Copynumber: 2.3 Consensus size: 85
37372287 ACATGGCTTT
* * * * * *
37372297 GATATAATATTTCCTGTAAGATCATGTCTGGGACATGGCATTGATACAATATTCCGTGTAAGACC
1 GATATGATATTACATGTAAGACCATGTCTGGGACATGGCATCGATACAAGATTCCGTGTAAGACC
*
37372362 ATAGCTGGGCTATTGGCATC
66 ATAGCTAGGCTATTGGCATC
* * ** *
37372382 TG-TATGATATTACGTGTAAGACCATGTCTGGGACATGGCATCGTTATGAGATTTCGTGTAAGAC
1 -GATATGATATTACATGTAAGACCATGTCTGGGACATGGCATCGATACAAGATTCCGTGTAAGAC
*
37372446 CATAGCTAGGCTATTGGCTTC
65 CATAGCTAGGCTATTGGCATC
37372467 GATATGATATTACATGTAAGACCAT
1 GATATGATATTACATGTAAGACCAT
37372492 ATTCGAGATA
Statistics
Matches: 95, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
84 1 0.01
85 93 0.98
86 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.32
Consensus pattern (85 bp):
GATATGATATTACATGTAAGACCATGTCTGGGACATGGCATCGATACAAGATTCCGTGTAAGACC
ATAGCTAGGCTATTGGCATC
Found at i:37375284 original size:44 final size:44
Alignment explanation
Indices: 37375219--37375303 Score: 100
Period size: 44 Copynumber: 1.9 Consensus size: 44
37375209 ATGATATCTC
* * *
37375219 AAATTCCATGGTTGTACCATGGAAATTAAGGAAGAATTGACGTA
1 AAATTCCATGGTTATAACATGGAAATTAAAGAAGAATTGACGTA
* * *
37375263 AAATTCCAT-GTTCATAACATGGCATTTAAAGAGGAATTGAC
1 AAATTCCATGGTT-ATAACATGGAAATTAAAGAAGAATTGAC
37375304 AGTTAAGGAT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
43 3 0.09
44 31 0.91
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (44 bp):
AAATTCCATGGTTATAACATGGAAATTAAAGAAGAATTGACGTA
Found at i:37375695 original size:108 final size:108
Alignment explanation
Indices: 37375503--37375799 Score: 450
Period size: 108 Copynumber: 2.7 Consensus size: 108
37375493 ATAAGGATAT
* * * * * *
37375503 CATGTAAGATCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGGCC
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCATGTAAGACC
** *
37375568 ATGTCAAGACATGATATTGATGAGTTACTACAAGGCAAAGGTCC
65 ATGTCAAGACATGGCATTGATGAGTTACTACAAGGAAAAGGTCC
* * *
37375612 TATGTAAGACCATTCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
* *
37375677 TGTCAAGACATGGCATTGATGAGTTACTATAATGAAAAGGTCC
66 TGTCAAGACATGGCATTGATGAGTTACTACAAGGAAAAGGTCC
*
37375720 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCACGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
37375785 TGTCAAGACATGGCA
66 TGTCAAGACATGGCA
37375800 ATGGTAAGTT
Statistics
Matches: 170, Mismatches: 18, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
108 138 0.81
109 32 0.19
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.23
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
TGTCAAGACATGGCATTGATGAGTTACTACAAGGAAAAGGTCC
Found at i:37375811 original size:53 final size:54
Alignment explanation
Indices: 37375495--37375799 Score: 325
Period size: 55 Copynumber: 5.6 Consensus size: 54
37375485 TTGGTAAGAT
* * * * *
37375495 AAGGATATCATGTAAGATCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * ** *
37375549 AAGGAAATCATGTAAGGCCATGTCAAGACATGATATTGATGAGTTACTACAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * *
37375604 AAAGG-T-CCTATGTAAGACCAT-TCCAAGGCATGGCAATGGTGAGTTC-ATAAGGC
1 -AAGGATACC-ATGTAAGACCATGT-CAAGACATGGCATTGATGAGTTCTATAAGGC
**
37375657 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAATGAA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAA-GGC
* * * *
37375713 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
*
37375765 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
37375800 ATGGTAAGTT
Statistics
Matches: 207, Mismatches: 33, Indels: 23
0.79 0.13 0.09
Matches are distributed among these distances:
52 9 0.04
53 68 0.33
54 45 0.22
55 76 0.37
56 9 0.04
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:37379950 original size:21 final size:22
Alignment explanation
Indices: 37379924--37379965 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
37379914 GTGTATTTTG
37379924 ATGTTTAATGGTAGA-AAACAT
1 ATGTTTAATGGTAGATAAACAT
*
37379945 ATGTTTAATGTTAGATAAACA
1 ATGTTTAATGGTAGATAAACA
37379966 ATATTTACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.43, C:0.05, G:0.17, T:0.36
Consensus pattern (22 bp):
ATGTTTAATGGTAGATAAACAT
Found at i:37379972 original size:21 final size:21
Alignment explanation
Indices: 37379927--37379972 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
37379917 TATTTTGATG
*
37379927 TTTAATGGTAGAAAACATATG
1 TTTAATGGTAGAAAACATATA
*
37379948 TTTAATGTTAGATAAACA-ATA
1 TTTAATGGTAGA-AAACATATA
37379969 TTTA
1 TTTA
37379973 CAAAGTGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.43, C:0.04, G:0.13, T:0.39
Consensus pattern (21 bp):
TTTAATGGTAGAAAACATATA
Found at i:37380069 original size:26 final size:26
Alignment explanation
Indices: 37380039--37380090 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
37380029 AATTTGTAAA
*
37380039 AAAGTGTGAATAAATGAAAAATGTGG
1 AAAGTGTGAATAAATGAAAAACGTGG
37380065 AAAGTGTGAATAAATGAAAAACGTGG
1 AAAGTGTGAATAAATGAAAAACGTGG
37380091 GCTTTTATGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.50, C:0.02, G:0.27, T:0.21
Consensus pattern (26 bp):
AAAGTGTGAATAAATGAAAAACGTGG
Found at i:37382072 original size:20 final size:20
Alignment explanation
Indices: 37382043--37382096 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
37382033 CACGGCCTGC
37382043 CCACACGGGCGTGTCCCAAA
1 CCACACGGGCGTGTCCCAAA
*
37382063 CCACATGGGCGTGTCCCAAA
1 CCACACGGGCGTGTCCCAAA
*
37382083 CCACACAGGCGTGT
1 CCACACGGGCGTGT
37382097 GACCCTTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.24, C:0.37, G:0.26, T:0.13
Consensus pattern (20 bp):
CCACACGGGCGTGTCCCAAA
Found at i:37387031 original size:26 final size:26
Alignment explanation
Indices: 37387002--37387109 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
37386992 TGGTACAAAT
37387002 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
37387028 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
37387054 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
37387080 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
37387106 TGAT
1 TGAT
37387110 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:37392853 original size:25 final size:25
Alignment explanation
Indices: 37392825--37392872 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
37392815 CGTGGAAGAA
37392825 AATTCTTAGATTTGGTTGCAAAGCC
1 AATTCTTAGATTTGGTTGCAAAGCC
37392850 AATTCTTAGATTTGGTTGCAAAG
1 AATTCTTAGATTTGGTTGCAAAG
37392873 TCAAGTTGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (25 bp):
AATTCTTAGATTTGGTTGCAAAGCC
Found at i:37399539 original size:25 final size:25
Alignment explanation
Indices: 37399511--37399559 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
37399501 AATTTTCCTT
37399511 TCCTTAACCTAATTACAACTACTCG
1 TCCTTAACCTAATTACAACTACTCG
37399536 TCCTTAACCTAATTACAACTACTC
1 TCCTTAACCTAATTACAACTACTC
37399560 TTGTACGAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.02, T:0.33
Consensus pattern (25 bp):
TCCTTAACCTAATTACAACTACTCG
Found at i:37408003 original size:34 final size:34
Alignment explanation
Indices: 37407940--37408009 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 34
37407930 ACAACTTTTG
* * *
37407940 TAAAAGGTGTTAGCATGAAAACACCTAAAATGAC
1 TAAAAGGTGTTAGCATAAAAACACATAAAAGGAC
*
37407974 TAAAAGGTGTTAGCATAAAAACATATAAAAGGAC
1 TAAAAGGTGTTAGCATAAAAACACATAAAAGGAC
37408008 TA
1 TA
37408010 TTTTGCATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.50, C:0.11, G:0.17, T:0.21
Consensus pattern (34 bp):
TAAAAGGTGTTAGCATAAAAACACATAAAAGGAC
Found at i:37408681 original size:46 final size:47
Alignment explanation
Indices: 37408504--37408722 Score: 162
Period size: 46 Copynumber: 4.7 Consensus size: 47
37408494 ATTGTGGGCT
* * * * * *
37408504 AGTGTAA-AACATGTTTGGGACATGCATCAGCCAC-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCTACGA-GAAGAGAGCC
* * * *
37408550 TGTGTAAGACCATGTCTGGGACATGACATTGGC-ATCGAGAAGAGTGCT
1 AGTGTAAGACCATGTCTGGGACATG-CATCGGCTA-CGAGAAGAGAGCC
* ** * *
37408598 AGTGTAAGA-CATGTCCGGGACATGCATCGATTTCGAGACGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCTACGAGAAG-AGAGCC
* * * *
37408644 AGTGTAAGA-CATGTCTAGGACATGCATCGGCTACGAGATGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCTACGAGAAGAGAGCC
* *
37408690 AGTGTAACACCATGTCTGGGATATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGC
37408723 ACCCTACCCC
Statistics
Matches: 136, Mismatches: 28, Indels: 16
0.76 0.16 0.09
Matches are distributed among these distances:
45 1 0.01
46 63 0.46
47 43 0.32
48 28 0.21
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCTACGAGAAGAGAGCC
Found at i:37411480 original size:50 final size:51
Alignment explanation
Indices: 37411403--37411531 Score: 206
Period size: 50 Copynumber: 2.5 Consensus size: 51
37411393 GACCATGGCA
*
37411403 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* *
37411454 A-AAGTGATAAGTGATAGTTTCGGCTACACTTATCTGATTAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* *
37411504 ACAAGTGAAAAGTGGTAGCTTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
37411532 CTGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
50 47 0.66
51 24 0.34
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:37411545 original size:31 final size:31
Alignment explanation
Indices: 37411507--37411624 Score: 209
Period size: 31 Copynumber: 3.8 Consensus size: 31
37411497 ACAAATGACA
37411507 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
37411538 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
37411569 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
37411600 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
37411625 AAGTGACAAG
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 82 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:37411712 original size:47 final size:46
Alignment explanation
Indices: 37411642--37411765 Score: 167
Period size: 47 Copynumber: 2.7 Consensus size: 46
37411632 AAGTGATTTC
* * *
37411642 CGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
* *
37411688 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
* * *
37411735 CGTGTAAGACCATAGCTGGGCTATGGCATCA
1 CGTATAAGACCATATCTGGGATATGGCATCA
37411766 ATATGTGAAT
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
46 28 0.41
47 41 0.59
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
Found at i:37411794 original size:42 final size:42
Alignment explanation
Indices: 37411693--37411848 Score: 181
Period size: 42 Copynumber: 3.6 Consensus size: 42
37411683 TGCTACTGTA
* *
37411693 TAAGACCATATCTGGGATATGGCATCAGTGAGATATGTG-AT-TCGTG
1 TAAGACCATAGCTGGGCTATGGCATC----A-ATATGTGAATAT-GTG
37411739 TAAGACCATAGCTGGGCTATGGCATCAATATGTGAATATGTG
1 TAAGACCATAGCTGGGCTATGGCATCAATATGTGAATATGTG
* *
37411781 TAAGACCATAGCTGGGCTATGGCATCATTATGTGAAGATGTG
1 TAAGACCATAGCTGGGCTATGGCATCAATATGTGAATATGTG
* **
37411823 TAAGACCATAGTTGAACTATGGCATC
1 TAAGACCATAGCTGGGCTATGGCATC
37411849 GAGAAAACGA
Statistics
Matches: 101, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
41 7 0.07
42 69 0.68
43 1 0.01
46 24 0.24
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (42 bp):
TAAGACCATAGCTGGGCTATGGCATCAATATGTGAATATGTG
Found at i:37418053 original size:46 final size:45
Alignment explanation
Indices: 37418003--37418178 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
37417993 TGGTTGAGCA
37418003 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
37418049 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
37418096 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
37418142 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37418179 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:37418159 original size:93 final size:93
Alignment explanation
Indices: 37418000--37418170 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
37417990 GGATGGTTGA
* *
37418000 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
37418065 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
37418093 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
37418158 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
37418171 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:37426274 original size:46 final size:46
Alignment explanation
Indices: 37426204--37426430 Score: 312
Period size: 46 Copynumber: 4.9 Consensus size: 46
37426194 TTTGACATGA
* * * * ** *
37426204 TGCCATAGTGTCTTTCAACTATGGTCTTACCCATTTTC-TGCCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* ** * * *
37426250 TGCCATGGTATCTTCCAACCATGGTCTTATTCATTTCATGTTACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
37426296 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
37426342 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
37426388 TGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
37426431 AAGAGCACAC
Statistics
Matches: 164, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 4 0.02
46 160 0.98
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:37431921 original size:29 final size:29
Alignment explanation
Indices: 37431814--37431914 Score: 159
Period size: 29 Copynumber: 3.5 Consensus size: 29
37431804 TAGGTCACTA
37431814 AACTTTAATTTATTACGTTTTGGTCATTG
1 AACTTTAATTTATTACGTTTTGGTCATTG
* *
37431843 AACTTTAATTTATT-CGTTTTGATCAATG
1 AACTTTAATTTATTACGTTTTGGTCATTG
* *
37431871 GACTTTAATTTATTACCTTTTGGTCATTG
1 AACTTTAATTTATTACGTTTTGGTCATTG
37431900 AACTTTAATTTATTA
1 AACTTTAATTTATTA
37431915 TATTTTGATC
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
28 25 0.39
29 39 0.61
ACGTcount: A:0.27, C:0.11, G:0.11, T:0.51
Consensus pattern (29 bp):
AACTTTAATTTATTACGTTTTGGTCATTG
Found at i:37436883 original size:3 final size:3
Alignment explanation
Indices: 37436871--37436925 Score: 62
Period size: 3 Copynumber: 19.3 Consensus size: 3
37436861 GCATCTCCAT
* * *
37436871 TTC TTC -TC TTC TTT TTC TTC TTC -TC CTC TTC TTA TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
37436917 -TC TTC TTC T
1 TTC TTC TTC T
37436926 ACTGTTTTGC
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
2 6 0.14
3 38 0.86
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:37436893 original size:17 final size:17
Alignment explanation
Indices: 37436871--37436917 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
37436861 GCATCTCCAT
* *
37436871 TTCTTCTCTTCTTTTTC
1 TTCTTCTCTTCTTCTTA
*
37436888 TTCTTCTCCTCTTCTTA
1 TTCTTCTCTTCTTCTTA
37436905 TTCTTCTTCTTCT
1 TTCTTC-TCTTCT
37436918 CTTCTTCTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
17 20 0.80
18 5 0.20
ACGTcount: A:0.02, C:0.32, G:0.00, T:0.66
Consensus pattern (17 bp):
TTCTTCTCTTCTTCTTA
Found at i:37436899 original size:20 final size:20
Alignment explanation
Indices: 37436871--37436923 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
37436861 GCATCTCCAT
*
37436871 TTCTTCTCTTCTTTTTCTTC
1 TTCTTCTCTTCTTATTCTTC
*
37436891 TTCTCCTCTTCTTATTCTTC
1 TTCTTCTCTTCTTATTCTTC
37436911 TTCTTCTCTTCTT
1 TTCTTCTCTTCTT
37436924 CTACTGTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.02, C:0.32, G:0.00, T:0.66
Consensus pattern (20 bp):
TTCTTCTCTTCTTATTCTTC
Found at i:37436920 original size:17 final size:16
Alignment explanation
Indices: 37436870--37436925 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 16
37436860 GGCATCTCCA
37436870 TTTCTTC-TCTTCT-T
1 TTTCTTCTTCTTCTCT
37436884 TTTCTTCTTCTCCTCTTCT
1 TTTCTTCTTCT--TC-TCT
37436903 TATTCTTCTTCTTCTCT
1 T-TTCTTCTTCTTCTCT
37436920 TCTTCT
1 T-TTCT
37436926 ACTGTTTTGC
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
14 7 0.20
15 3 0.09
17 10 0.29
18 3 0.09
19 2 0.06
20 10 0.29
ACGTcount: A:0.02, C:0.32, G:0.00, T:0.66
Consensus pattern (16 bp):
TTTCTTCTTCTTCTCT
Found at i:37437239 original size:16 final size:16
Alignment explanation
Indices: 37437218--37437266 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
37437208 ACGCGTTTCC
37437218 CTCTTTTCTTT-TTCTT
1 CTCTTTTCTTTCTT-TT
*
37437234 CTCTTTCCTTTCTTTT
1 CTCTTTTCTTTCTTTT
* *
37437250 CTCTCTTCTTTATTTT
1 CTCTTTTCTTTCTTTT
37437266 C
1 C
37437267 CCTATCCTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
16 26 0.93
17 2 0.07
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.69
Consensus pattern (16 bp):
CTCTTTTCTTTCTTTT
Found at i:37437946 original size:19 final size:20
Alignment explanation
Indices: 37437924--37437965 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
37437914 AAAGCATAAG
*
37437924 AAGG-AAAAAAAAAGAAACA
1 AAGGAAAAAAAAAAGAAAAA
37437943 AAGGAAAAAAAAAAGAAAAA
1 AAGGAAAAAAAAAAGAAAAA
37437963 AAG
1 AAG
37437966 TCAATAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.81, C:0.02, G:0.17, T:0.00
Consensus pattern (20 bp):
AAGGAAAAAAAAAAGAAAAA
Found at i:37441406 original size:28 final size:28
Alignment explanation
Indices: 37441375--37441430 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
37441365 TTTCTAATTA
* * *
37441375 AATTCAATTTTAATCCTTTTTATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
* *
37441403 AATTTACTTTAAATACTTTATATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
37441431 TTTAAATATT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (28 bp):
AATTCAATTTAAATACTTTATATATTTT
Found at i:37441476 original size:17 final size:17
Alignment explanation
Indices: 37441456--37441489 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
37441446 TATATTACTA
37441456 TTATTATCCAT-TATTTT
1 TTATTAT-CATATATTTT
37441473 TTATTATCATATATTTT
1 TTATTATCATATATTTT
37441490 ATCTATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATTATCATATATTTT
Found at i:37441526 original size:14 final size:14
Alignment explanation
Indices: 37441471--37441545 Score: 55
Period size: 14 Copynumber: 5.3 Consensus size: 14
37441461 ATCCATTATT
*
37441471 TTTTATTATCATATA
1 TTTTATT-TTATATA
* *
37441486 TTTTATCTATAAATTA
1 TTTTAT-TTTATA-TA
* *
37441502 TATTATATTATATA
1 TTTTATTTTATATA
37441516 TTTTATTTTATATA
1 TTTTATTTTATATA
*
37441530 -TTT-CTTTATATA
1 TTTTATTTTATATA
37441542 TTTT
1 TTTT
37441546 TTTATAAAAT
Statistics
Matches: 47, Mismatches: 10, Indels: 8
0.72 0.15 0.12
Matches are distributed among these distances:
12 8 0.17
13 6 0.13
14 14 0.30
15 11 0.23
16 8 0.17
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (14 bp):
TTTTATTTTATATA
Found at i:37441537 original size:12 final size:12
Alignment explanation
Indices: 37441522--37441551 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
37441512 TATATTTTAT
37441522 TTTATATATTTC
1 TTTATATATTTC
*
37441534 TTTATATATTTT
1 TTTATATATTTC
37441546 TTTATA
1 TTTATA
37441552 AAATTGTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (12 bp):
TTTATATATTTC
Found at i:37441921 original size:18 final size:18
Alignment explanation
Indices: 37441895--37441935 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
37441885 TACCATATTA
*
37441895 TATTTCATACTATATTTT
1 TATTACATACTATATTTT
37441913 TATTACATACTATATTTT
1 TATTACATACTATATTTT
37441931 TATTA
1 TATTA
37441936 TTCAATATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.59
Consensus pattern (18 bp):
TATTACATACTATATTTT
Found at i:37442008 original size:22 final size:22
Alignment explanation
Indices: 37441970--37442019 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
37441960 CTTTCTCATA
* *
37441970 TATTTTTTTATTATATATTATT
1 TATTTTTTTATTATATAGTAAT
*
37441992 TATTTTGTTT-TTCTATAGTAAT
1 TATTTT-TTTATTATATAGTAAT
37442014 TATTTT
1 TATTTT
37442020 ACCATATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 21 0.88
23 3 0.12
ACGTcount: A:0.24, C:0.02, G:0.04, T:0.70
Consensus pattern (22 bp):
TATTTTTTTATTATATAGTAAT
Found at i:37442071 original size:21 final size:22
Alignment explanation
Indices: 37442045--37442105 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 22
37442035 GCAAAATACT
37442045 TATTATATTT-TTATTATTTTA
1 TATTATATTTCTTATTATTTTA
37442066 TATTATATTTCCTTA-TATTTTA
1 TATTATATTT-CTTATTATTTTA
* *
37442088 T-TCATATTATATTATTAT
1 TATTATATT-TCTTATTAT
37442106 ACATAACTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
21 19 0.56
22 12 0.35
23 3 0.09
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.66
Consensus pattern (22 bp):
TATTATATTTCTTATTATTTTA
Found at i:37458077 original size:206 final size:206
Alignment explanation
Indices: 37457714--37458268 Score: 853
Period size: 206 Copynumber: 2.7 Consensus size: 206
37457704 GCAGATCTGG
* ** * *
37457714 CTGAAGCAGGATCCAAGATGATTTGGCATCCTTGTGCTTACCTGGAACAAAACGAAGACATAACT
1 CTGAAGCA-GATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCT
* *
37457779 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTCAG
* *
37457844 AGAGCAGATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
130 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
37457909 CAGATGATTAGA
195 CAGATGATTAGA
*
37457921 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATTGAA-ATCATAGCT
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGA-CATAGCT
* * *
37457985 GATTTAGCTTTCACATGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTTTGTATTGTCAG
65 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTCAG
*
37458050 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAGCCTT
130 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
*
37458115 TAGATGATTAGA
195 CAGATGATTAGA
* * * * *
37458127 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTATTTACAACGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
* ** *
37458192 ATTTGGTTTTCGTGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCAT-TTCTGTATTATCAG
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTT-TGTATTGTCAG
37458256 AGAACAAATCGAA
130 AGAACAAATCGAA
37458269 AAAGCAGATT
Statistics
Matches: 317, Mismatches: 28, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
205 3 0.01
206 305 0.96
207 9 0.03
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTCAGA
GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
AGATGATTAGA
Found at i:37459820 original size:28 final size:28
Alignment explanation
Indices: 37459789--37459844 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
37459779 TTTCTAATTA
* *
37459789 AATTCAACTTT-AATCCTTTTTATATTTT
1 AATT-AACTTTAAATACTTTATATATTTT
*
37459817 AATTTACTTTAAATACTTTATATATTTT
1 AATTAACTTTAAATACTTTATATATTTT
37459845 TTTAAATATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 5 0.21
28 19 0.79
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.57
Consensus pattern (28 bp):
AATTAACTTTAAATACTTTATATATTTT
Found at i:37459940 original size:14 final size:14
Alignment explanation
Indices: 37459885--37459959 Score: 55
Period size: 14 Copynumber: 5.3 Consensus size: 14
37459875 ATCCATTATT
*
37459885 TTTTATTATCATATA
1 TTTTATT-TTATATA
* *
37459900 TTTTATCTATAAATTA
1 TTTTAT-TTTATA-TA
* *
37459916 TATTATATTATATA
1 TTTTATTTTATATA
37459930 TTTTATTTTATATA
1 TTTTATTTTATATA
*
37459944 -TTT-CTTTATATA
1 TTTTATTTTATATA
37459956 TTTT
1 TTTT
37459960 TTATAAAATT
Statistics
Matches: 47, Mismatches: 10, Indels: 8
0.72 0.15 0.12
Matches are distributed among these distances:
12 8 0.17
13 6 0.13
14 14 0.30
15 11 0.23
16 8 0.17
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (14 bp):
TTTTATTTTATATA
Found at i:37459951 original size:12 final size:11
Alignment explanation
Indices: 37459935--37459964 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
37459925 ATATATTTTA
37459935 TTTTATATATT
1 TTTTATATATT
37459946 TCTTTATATATT
1 T-TTTATATATT
37459958 TTTTATA
1 TTTTATA
37459965 AAATTGTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTATATATT
Found at i:37459982 original size:20 final size:21
Alignment explanation
Indices: 37459954--37459993 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
37459944 TTTCTTTATA
*
37459954 TATTTTTTA-TAAAATTGTAT
1 TATTATTTACTAAAATTGTAT
*
37459974 TATTATTTACTAAATTTGTA
1 TATTATTTACTAAAATTGTA
37459994 AATGGCAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (21 bp):
TATTATTTACTAAAATTGTAT
Found at i:37462683 original size:206 final size:206
Alignment explanation
Indices: 37462320--37462874 Score: 853
Period size: 206 Copynumber: 2.7 Consensus size: 206
37462310 GCAGATCTGG
* ** * *
37462320 CTGAAGCAGGATCCAAGATGATTTGGCATCCTTGTGCTTACCTGGAACAAAACGAAGACATAACT
1 CTGAAGCA-GATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCT
* *
37462385 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTCAG
* *
37462450 AGAGCAGATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
130 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
37462515 CAGATGATTAGA
195 CAGATGATTAGA
*
37462527 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATTGAA-ATCATAGCT
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGA-CATAGCT
* * *
37462591 GATTTAGCTTTCACATGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTTTGTATTGTCAG
65 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTCAG
*
37462656 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAGCCTT
130 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
*
37462721 TAGATGATTAGA
195 CAGATGATTAGA
* * * * *
37462733 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTATTTACAACGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
* ** *
37462798 ATTTGGTTTTCGTGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCAT-TTCTGTATTATCAG
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTT-TGTATTGTCAG
37462862 AGAACAAATCGAA
130 AGAACAAATCGAA
37462875 AAAGCAGATT
Statistics
Matches: 317, Mismatches: 28, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
205 3 0.01
206 305 0.96
207 9 0.03
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTCAGA
GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
AGATGATTAGA
Found at i:37464426 original size:28 final size:28
Alignment explanation
Indices: 37464395--37464450 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
37464385 TTTCTAATTA
* *
37464395 AATTCAACTTT-AATCCTTTTTATATTTT
1 AATT-AACTTTAAATACTTTATATATTTT
*
37464423 AATTTACTTTAAATACTTTATATATTTT
1 AATTAACTTTAAATACTTTATATATTTT
37464451 TTTAAATATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 5 0.21
28 19 0.79
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.57
Consensus pattern (28 bp):
AATTAACTTTAAATACTTTATATATTTT
Found at i:37464546 original size:14 final size:14
Alignment explanation
Indices: 37464491--37464565 Score: 55
Period size: 14 Copynumber: 5.3 Consensus size: 14
37464481 ATCCATTATT
*
37464491 TTTTATTATCATATA
1 TTTTATT-TTATATA
* *
37464506 TTTTATCTATAAATTA
1 TTTTAT-TTTATA-TA
* *
37464522 TATTATATTATATA
1 TTTTATTTTATATA
37464536 TTTTATTTTATATA
1 TTTTATTTTATATA
*
37464550 -TTT-CTTTATATA
1 TTTTATTTTATATA
37464562 TTTT
1 TTTT
37464566 TTATAAAATT
Statistics
Matches: 47, Mismatches: 10, Indels: 8
0.72 0.15 0.12
Matches are distributed among these distances:
12 8 0.17
13 6 0.13
14 14 0.30
15 11 0.23
16 8 0.17
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (14 bp):
TTTTATTTTATATA
Found at i:37464557 original size:12 final size:11
Alignment explanation
Indices: 37464541--37464570 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
37464531 ATATATTTTA
37464541 TTTTATATATT
1 TTTTATATATT
37464552 TCTTTATATATT
1 T-TTTATATATT
37464564 TTTTATA
1 TTTTATA
37464571 AAATTGTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTATATATT
Found at i:37464588 original size:20 final size:21
Alignment explanation
Indices: 37464560--37464599 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
37464550 TTTCTTTATA
*
37464560 TATTTTTTA-TAAAATTGTAT
1 TATTATTTACTAAAATTGTAT
*
37464580 TATTATTTACTAAATTTGTA
1 TATTATTTACTAAAATTGTA
37464600 AATGGCAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (21 bp):
TATTATTTACTAAAATTGTAT
Found at i:37464940 original size:18 final size:18
Alignment explanation
Indices: 37464914--37464954 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
37464904 TACCATATTA
*
37464914 TATTTCATACTATATTTT
1 TATTACATACTATATTTT
37464932 TATTACATACTATATTTT
1 TATTACATACTATATTTT
37464950 TATTA
1 TATTA
37464955 TTCAATATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.59
Consensus pattern (18 bp):
TATTACATACTATATTTT
Found at i:37465091 original size:21 final size:22
Alignment explanation
Indices: 37465065--37465125 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 22
37465055 GCAAAATACT
37465065 TATTATATTT-TTATTATTTTA
1 TATTATATTTCTTATTATTTTA
37465086 TATTATATTTCCTTA-TATTTTA
1 TATTATATTT-CTTATTATTTTA
* *
37465108 T-TCATATTATATTATTAT
1 TATTATATT-TCTTATTAT
37465126 ACATAACTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
21 19 0.56
22 12 0.35
23 3 0.09
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.66
Consensus pattern (22 bp):
TATTATATTTCTTATTATTTTA
Found at i:37466601 original size:16 final size:17
Alignment explanation
Indices: 37466564--37466603 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
37466554 TCCAAAACAT
*
37466564 TATTAAAAATGATAGAA
1 TATTAAAAATGATACAA
37466581 -A-TAAAAAT-ATACAA
1 TATTAAAAATGATACAA
37466595 TATTAAAAA
1 TATTAAAAA
37466604 ATGCTCAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 5
0.77 0.04 0.19
Matches are distributed among these distances:
14 5 0.25
15 8 0.40
16 7 0.35
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.28
Consensus pattern (17 bp):
TATTAAAAATGATACAA
Found at i:37469007 original size:27 final size:27
Alignment explanation
Indices: 37468977--37469039 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
37468967 CTCAACTTGT
*
37468977 AAAACTACCAAAGTACCCTC-GATTTAC
1 AAAATTACCAAAGTACCCTCAG-TTTAC
***
37469004 AAAATTACCATTTTACCCTCAGTTTAC
1 AAAATTACCAAAGTACCCTCAGTTTAC
37469031 AAAATTACC
1 AAAATTACC
37469040 GTTTTACCCT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.40, C:0.27, G:0.05, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAGTACCCTCAGTTTAC
Found at i:37469044 original size:27 final size:28
Alignment explanation
Indices: 37468990--37469051 Score: 101
Period size: 27 Copynumber: 2.3 Consensus size: 28
37468980 ACTACCAAAG
37468990 TACCCTC-GATTTACAAAATTACCATTT
1 TACCCTCAGATTTACAAAATTACCATTT
*
37469017 TACCCTCAG-TTTACAAAATTACCGTTT
1 TACCCTCAGATTTACAAAATTACCATTT
37469044 TACCCTCA
1 TACCCTCA
37469052 ATTGTGAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.31, C:0.29, G:0.05, T:0.35
Consensus pattern (28 bp):
TACCCTCAGATTTACAAAATTACCATTT
Found at i:37469116 original size:27 final size:27
Alignment explanation
Indices: 37469086--37469155 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
37469076 TGTAGGATAG
**
37469086 AATTACCAAAATACCAC-TGGTTTG-AGA
1 AATTACCAAAATACC-CTTAATTTGTA-A
*
37469113 AATTACCGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCTTAATTTGTAA
37469140 AATTACCAAAATACCC
1 AATTACCAAAATACCC
37469156 CTGATTAACA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 1 0.03
27 35 0.95
28 1 0.03
ACGTcount: A:0.43, C:0.21, G:0.09, T:0.27
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAATTTGTAA
Found at i:37470073 original size:31 final size:31
Alignment explanation
Indices: 37470035--37470206 Score: 344
Period size: 31 Copynumber: 5.5 Consensus size: 31
37470025 TTTAACGGTT
37470035 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
37470066 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
37470097 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
37470128 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
37470159 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
37470190 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
37470207 ACTGTAAACG
Statistics
Matches: 141, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 141 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:37470277 original size:42 final size:42
Alignment explanation
Indices: 37470230--37470321 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
37470220 TGGCCCTTAG
* ** *
37470230 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
37470272 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
37470314 GCCCATTT
1 GCCCATTT
37470322 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:37470537 original size:26 final size:26
Alignment explanation
Indices: 37470466--37470588 Score: 196
Period size: 26 Copynumber: 4.8 Consensus size: 26
37470456 CCTCTTTAAT
**
37470466 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
37470491 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
37470516 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
37470542 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
37470568 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
37470589 GCACTTCCTC
Statistics
Matches: 91, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 33 0.36
26 58 0.64
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:37470577 original size:52 final size:51
Alignment explanation
Indices: 37470466--37470588 Score: 230
Period size: 52 Copynumber: 2.4 Consensus size: 51
37470456 CCTCTTTAAT
37470466 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATA
37470516 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCAATA
37470568 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
37470589 GCACTTCCTC
Statistics
Matches: 71, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
50 10 0.14
51 25 0.35
52 36 0.51
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (51 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATA
Found at i:37470663 original size:20 final size:20
Alignment explanation
Indices: 37470638--37470704 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
37470628 TTATGAATAC
37470638 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
37470658 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
37470678 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
37470698 ATCATGT
1 ATCATGT
37470705 ATATCATATC
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.39
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:37471577 original size:27 final size:26
Alignment explanation
Indices: 37471526--37471581 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
37471516 GTAAATCTAC
*
37471526 AAACCAAGGGTATTTCAATAATTTTGT
1 AAACCAAGGGTATTCCAATAATTTT-T
* * *
37471553 AAACCAATGGTATTCCTATAGTTTTT
1 AAACCAAGGGTATTCCAATAATTTTT
37471579 AAA
1 AAA
37471582 AAAGTCAAGG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (26 bp):
AAACCAAGGGTATTCCAATAATTTTT
Found at i:37471640 original size:27 final size:26
Alignment explanation
Indices: 37471590--37471686 Score: 72
Period size: 27 Copynumber: 3.6 Consensus size: 26
37471580 AAAAAGTCAA
*
37471590 GGGTATTTCT-GTAATTTTGTAAATTAG
1 GGGTATTT-TGGTAATTTT-CAAATTAG
37471617 GGGTATTTTGGTAATTTTACAAATT-G
1 GGGTATTTTGGTAATTTT-CAAATTAG
* * * **
37471643 AGGGTGTCTCGGTAATTTCTCAAACCAG
1 -GGGTATTTTGGTAATTT-TCAAATTAG
*
37471671 TGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
37471687 CTATCCTACA
Statistics
Matches: 55, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
26 2 0.04
27 51 0.93
28 2 0.04
ACGTcount: A:0.25, C:0.08, G:0.24, T:0.43
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTCAAATTAG
Done.