Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 133 of 235
Found at i:45116208 original size:56 final size:56
Alignment explanation
Indices: 45116141--45116260 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
45116131 TATTAGTTTA
45116141 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
* *
45116197 TTGCCCATGCTTCTTATTTTATTTTTTCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
45116253 TTGCCCAT
1 TTGCCCAT
45116261 CATCCCTTGT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:45120650 original size:28 final size:28
Alignment explanation
Indices: 45120605--45120670 Score: 96
Period size: 28 Copynumber: 2.4 Consensus size: 28
45120595 GCTTACACTA
* *
45120605 ACTTTGACTTGCATTTAGACTATCTTCC
1 ACTTTGACTTGCACTTAGACTATCTGCC
* *
45120633 ATTTTGGCTTGCACTTAGACTATCTGCC
1 ACTTTGACTTGCACTTAGACTATCTGCC
45120661 ACTTTGACTT
1 ACTTTGACTT
45120671 TCACCCACTT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (28 bp):
ACTTTGACTTGCACTTAGACTATCTGCC
Found at i:45120734 original size:28 final size:28
Alignment explanation
Indices: 45120703--45120775 Score: 101
Period size: 28 Copynumber: 2.6 Consensus size: 28
45120693 TAAACTGTCT
* *
45120703 GCCACTTTGACTTGCATTTAGAATCTCC
1 GCCACTTTGGCTTGCACTTAGAATCTCC
* *
45120731 GCCACTTTGGCTTGCACTTAGACTGTCC
1 GCCACTTTGGCTTGCACTTAGAATCTCC
*
45120759 ACCACTTTGGCTTGCAC
1 GCCACTTTGGCTTGCAC
45120776 CCACCTTTGG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.18, C:0.32, G:0.18, T:0.33
Consensus pattern (28 bp):
GCCACTTTGGCTTGCACTTAGAATCTCC
Found at i:45122765 original size:20 final size:20
Alignment explanation
Indices: 45122738--45122784 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 20
45122728 TAAATATAAG
*
45122738 ATAATAAAC-AAATAAAAAC
1 ATAATAAACAAAAGAAAAAC
45122757 ATGAATAAACTAAAAGAAAAAC
1 AT-AATAAAC-AAAAGAAAAAC
45122779 ATAATA
1 ATAATA
45122785 CATGCAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 2 0.08
20 7 0.29
21 4 0.17
22 11 0.46
ACGTcount: A:0.70, C:0.09, G:0.04, T:0.17
Consensus pattern (20 bp):
ATAATAAACAAAAGAAAAAC
Found at i:45123383 original size:22 final size:21
Alignment explanation
Indices: 45123353--45123399 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
45123343 TACAAATTAA
45123353 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
45123375 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
45123396 ATCT
1 ATCT
45123400 AAGATTGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:45123393 original size:16 final size:16
Alignment explanation
Indices: 45123372--45123422 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 16
45123362 ATTACAAGAT
45123372 CATATCTTCAAGATTG
1 CATATCTTCAAGATTG
45123388 CATATCATATCTAAGATTG
1 CATATC-T-TC-AAGATTG
*
45123407 CATATCCTTAAAGATT
1 CATAT-CTTCAAGATT
45123423 ATATTTCCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
16 6 0.20
17 7 0.23
18 3 0.10
19 13 0.43
20 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (16 bp):
CATATCTTCAAGATTG
Found at i:45123405 original size:19 final size:21
Alignment explanation
Indices: 45123370--45123412 Score: 72
Period size: 19 Copynumber: 2.1 Consensus size: 21
45123360 AGATTACAAG
45123370 ATCATATCTTCAAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
45123391 ATCATATC-T-AAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
45123410 ATC
1 ATC
45123413 CTTAAAGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 13 0.59
20 1 0.05
21 8 0.36
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (21 bp):
ATCATATCTTCAAGATTGCAT
Found at i:45124209 original size:220 final size:220
Alignment explanation
Indices: 45123771--45124590 Score: 1300
Period size: 220 Copynumber: 3.7 Consensus size: 220
45123761 GTCAAATACA
* ** * *
45123771 GAGATGTCAAATCTGCTACCTTCGATTCGTTC-CTTGACAATACAGAGATGTCAAATCATCTTGG
1 GAGATGCCAAATCTG-TTTCTTCGATTTGTTCTC-TGACAATACAGAGATGCCAAATCATCTTGG
* *
45123835 ATCTGCTTCAGCGTAAACACCTGAAGGTCAGATCTACTATGTCTTCGATTTGCTCCTTGTAAACA
64 ATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACA
* * * * *
45123900 CAAGGATGCTAAATCATCTTGGATCTGCTTCAATGTGAAAATATCCGAAGGTCAGATCTGCTATG
129 CAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATG
* * * *
45123965 CCTTCAATCTACTCTCCGTCGAATATG
194 TCTTCGATCTGCTCTCCATCGAATATG
* * * *
45123992 GAGATGCCAAATCTGTTTATTCAATTTGTTCTCTGACAATACAGACATGTCAAATCATCTTGGAT
1 GAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGAT
*
45124057 CTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTACGATTTGCTCCTTGTAAACACA
66 CTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACA
* * *
45124122 AGAATGCCAAATCATCTTGGATCTGCTTTGATGTGAAAACATCCAAAGGTCAGAACTGCTATGTG
131 AGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTC
*
45124187 TTCGATCTGCTCTCTATCGAATATG
196 TTCGATCTGCTCTCCATCGAATATG
45124212 GAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGAT
1 GAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGAT
* * *
45124277 CTGCTTCAGTGTAAACACCTAAAGATCAGATCTGCTATGTCTTTGATTTGCTCCTTGTAAACACA
66 CTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACA
45124342 AGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTC
131 AGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTC
45124407 TTCGATCTGCTCTCCATCGAATATG
196 TTCGATCTGCTCTCCATCGAATATG
* *
45124432 GAGATGCCAAATCTGTTTCTTCGATTTCTTCTCTGACAATACAGATATGCCAAATCATCTTGGAT
1 GAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGAT
* * *
45124497 CTGCTTCAGTGTAAGCACCTGAAGGTCAAATCTGCTATGTCTTTGATTTGCTCCTTGTAAACACA
66 CTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACA
* *
45124562 AGAATACCAACTCATCTTGGATCTGCTTC
131 AGAATGCCAAATCATCTTGGATCTGCTTC
45124591 AGCATGAACA
Statistics
Matches: 555, Mismatches: 43, Indels: 3
0.92 0.07 0.00
Matches are distributed among these distances:
220 540 0.97
221 15 0.03
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (220 bp):
GAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGAT
CTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACA
AGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTC
TTCGATCTGCTCTCCATCGAATATG
Found at i:45124357 original size:87 final size:89
Alignment explanation
Indices: 45124258--45124418 Score: 256
Period size: 89 Copynumber: 1.8 Consensus size: 89
45124248 CAATACAGAG
*
45124258 ATGCCAAATCATCTTGGATCTGCTTC-A-GTGTAAACA-CCTAAAGATCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCC-AAAGATCAGATCTGCTATGTCTT
* *
45124320 TGATTTGCTCCTTGTAAACACAAGA
65 CGATCTGCTCCTTGTAAACACAAGA
*
45124345 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGATCAGATCTGCTATGTCTTC
45124410 GATCTGCTC
66 GATCTGCTC
45124419 TCCATCGAAT
Statistics
Matches: 67, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
87 26 0.39
88 1 0.01
89 38 0.57
90 2 0.03
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (89 bp):
ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGATCAGATCTGCTATGTCTTC
GATCTGCTCCTTGTAAACACAAGA
Found at i:45124744 original size:44 final size:44
Alignment explanation
Indices: 45124679--45124780 Score: 152
Period size: 44 Copynumber: 2.3 Consensus size: 44
45124669 ATCTACTCCA
* *
45124679 CTACTACTTA-GGGAGATAAGATCCGCAATTTTGACCTGTTACC
1 CTACTACTTAGGGGAGATAAGATCCGCAAATTTAACCTGTTACC
* * *
45124722 CTACTGCTTAGGGGAGATAAGATCTGTAAATTTAACCTGTTACC
1 CTACTACTTAGGGGAGATAAGATCCGCAAATTTAACCTGTTACC
45124766 CTACTACTTAGGGGA
1 CTACTACTTAGGGGA
45124781 TTAAGGCGCT
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 9 0.17
44 43 0.83
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (44 bp):
CTACTACTTAGGGGAGATAAGATCCGCAAATTTAACCTGTTACC
Found at i:45125751 original size:9 final size:9
Alignment explanation
Indices: 45125739--45125792 Score: 54
Period size: 9 Copynumber: 5.6 Consensus size: 9
45125729 CCATTTTTTC
45125739 TTTTTTCTT
1 TTTTTTCTT
*
45125748 TTTTTTAATT
1 TTTTTT-CTT
45125758 TTTTTCTCTTT
1 TTTTT-TC-TT
45125769 TTCTTTTCTT
1 TT-TTTTCTT
*
45125779 TTTTTCCTT
1 TTTTTTCTT
45125788 TTTTT
1 TTTTT
45125793 AAATAGAAGT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
9 17 0.45
10 11 0.29
11 7 0.18
12 3 0.08
ACGTcount: A:0.04, C:0.13, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:45128343 original size:12 final size:12
Alignment explanation
Indices: 45128318--45128350 Score: 57
Period size: 12 Copynumber: 2.7 Consensus size: 12
45128308 ATCGGTGACC
45128318 CTCTTTTCTCTTT
1 CTCTTTT-TCTTT
45128331 CTCTTTTTCTTT
1 CTCTTTTTCTTT
45128343 CTCTTTTT
1 CTCTTTTT
45128351 AATAACTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.65
13 7 0.35
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (12 bp):
CTCTTTTTCTTT
Found at i:45128422 original size:50 final size:50
Alignment explanation
Indices: 45128364--45128463 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
45128354 AACTTTAACT
45128364 AATTAGGGTCTTTTTATAATTTTGAAAGCAAATGATGCAATGAAATGCTA
1 AATTAGGGTCTTTTTATAATTTTGAAAGCAAATGATGCAATGAAATGCTA
45128414 AATTAGGGTCTTTTTATAATTTTGAAAGCAAATGATGCAATGAAATGCTA
1 AATTAGGGTCTTTTTATAATTTTGAAAGCAAATGATGCAATGAAATGCTA
45128464 TAAGATGCAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.36
Consensus pattern (50 bp):
AATTAGGGTCTTTTTATAATTTTGAAAGCAAATGATGCAATGAAATGCTA
Found at i:45132442 original size:9 final size:9
Alignment explanation
Indices: 45132337--45132460 Score: 64
Period size: 9 Copynumber: 13.7 Consensus size: 9
45132327 GAAAAACTTA
45132337 AATAAATAT
1 AATAAATAT
45132346 AATGAAATAT
1 AAT-AAATAT
45132356 AAT--ATGA-
1 AATAAAT-AT
**
45132363 AATATGTAT
1 AATAAATAT
45132372 AAT-AATAAT
1 AATAAAT-AT
*
45132381 AATAATAATGT
1 AAT-A-AATAT
*
45132392 AACAAATAT
1 AATAAATAT
** *
45132401 TTTACATAT
1 AATAAATAT
45132410 AA-AAATAT
1 AATAAATAT
45132418 AATAAA-AT
1 AATAAATAT
45132426 AAGT-AATAT
1 AA-TAAATAT
45132435 AATAAATAT
1 AATAAATAT
45132444 ATATAACATAT
1 A-ATAA-ATAT
45132455 AATAAA
1 AATAAA
45132461 ATTTATATAT
Statistics
Matches: 87, Mismatches: 13, Indels: 30
0.67 0.10 0.23
Matches are distributed among these distances:
7 5 0.06
8 17 0.20
9 36 0.41
10 18 0.21
11 8 0.09
12 3 0.03
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.33
Consensus pattern (9 bp):
AATAAATAT
Found at i:45134018 original size:4 final size:4
Alignment explanation
Indices: 45134011--45134039 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
45134001 AATAAATAGA
45134011 TATT TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT T
45134040 TCTTTTGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:45134454 original size:19 final size:19
Alignment explanation
Indices: 45134430--45134498 Score: 138
Period size: 19 Copynumber: 3.6 Consensus size: 19
45134420 CACATCTTCG
45134430 AGATTGCATATCATATCTA
1 AGATTGCATATCATATCTA
45134449 AGATTGCATATCATATCTA
1 AGATTGCATATCATATCTA
45134468 AGATTGCATATCATATCTA
1 AGATTGCATATCATATCTA
45134487 AGATTGCATATC
1 AGATTGCATATC
45134499 CTTAAAGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 50 1.00
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (19 bp):
AGATTGCATATCATATCTA
Found at i:45134909 original size:25 final size:25
Alignment explanation
Indices: 45134881--45134975 Score: 64
Period size: 26 Copynumber: 3.4 Consensus size: 25
45134871 TATTTAAATT
45134881 ATATTTTTTATTAAATTATTTTAAA
1 ATATTTTTTATTAAATTATTTTAAA
* *
45134906 ATATTTTATTTTTATAATTTTTGAAATTTGAAA
1 ATATTTT-TTATTA-AA---TT---ATTTTAAA
*
45134939 ATAATATTTTATATTAAATTATATTAAA
1 AT-AT-TTTT-TATTAAATTATTTTAAA
45134967 ATATTTTTT
1 ATATTTTTT
45134976 TATTTTCTCC
Statistics
Matches: 54, Mismatches: 5, Indels: 22
0.67 0.06 0.27
Matches are distributed among these distances:
25 8 0.15
26 9 0.17
27 4 0.07
28 8 0.15
30 2 0.04
31 2 0.04
33 9 0.17
34 5 0.09
35 7 0.13
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (25 bp):
ATATTTTTTATTAAATTATTTTAAA
Found at i:45140356 original size:19 final size:20
Alignment explanation
Indices: 45140323--45140363 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
45140313 GACAATTGGA
45140323 ATATAAATTATTTTATTTTAT
1 ATATAAATTATTTTA-TTTAT
45140344 ATATAAA-TA-TTTATTTAT
1 ATATAAATTATTTTATTTAT
45140362 AT
1 AT
45140364 TTATCTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 4 0.20
20 2 0.10
21 7 0.35
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
ATATAAATTATTTTATTTAT
Found at i:45140791 original size:84 final size:85
Alignment explanation
Indices: 45140677--45140841 Score: 226
Period size: 84 Copynumber: 2.0 Consensus size: 85
45140667 TAAAACGAGA
* * *
45140677 AATTAAAATTAAATAAAATATGTTTTAGGATTTATTCCCACCGATTAACAAGATTCTATTCGAT-
1 AATTAAAATTAAATAAAATATATTTCAGGATTTATTCCCACCGATTAACAAGATTCTATTCAATA
*
45140741 TTAATTTTGTTTTCAAATTAG
66 TTAATTTT-TTTCCAAATTAG
* ** * *
45140762 AATT-AAATTAAATAAAATCTATTTCAGGATTTATTCCCGTCGTTTAACAAGATTTTATTCAATA
1 AATTAAAATTAAATAAAATATATTTCAGGATTTATTCCCACCGATTAACAAGATTCTATTCAATA
45140826 TTAATTTTTTTCCAAA
66 TTAATTTTTTTCCAAA
45140842 CGAAGACTTA
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
84 58 0.83
85 12 0.17
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.43
Consensus pattern (85 bp):
AATTAAAATTAAATAAAATATATTTCAGGATTTATTCCCACCGATTAACAAGATTCTATTCAATA
TTAATTTTTTTCCAAATTAG
Found at i:45140891 original size:83 final size:84
Alignment explanation
Indices: 45140677--45140880 Score: 209
Period size: 84 Copynumber: 2.4 Consensus size: 84
45140667 TAAAACGAGA
* * * * ** * *
45140677 AATTAAAATTAAATAAAATATGTTTTAGGATTTATTCCCACCGATTAACAAGATTCTATTCGATT
1 AATT-AAATCAAATAAAATCTATTTCAGGATTTATTCCCGTCGTTTAACAAGATTCTATTCAATT
* **
45140742 TAATTTTGTTTTCAAATTAG
65 TAATTTTGTTTCCAAAGAAG
* *
45140762 AATTAAATTAAATAAAATCTATTTCAGGATTTATTCCCGTCGTTTAACAAGATTTTATTCAATAT
1 AATTAAATCAAATAAAATCTATTTCAGGATTTATTCCCGTCGTTTAACAAGATTCTATTCAAT-T
45140827 TAATTTT-TTTCCAAACGAAG
65 TAATTTTGTTTCCAAA-GAAG
* *
45140847 ACTT-AATCAAAT-AATTCTA-TTCTAGGATTTATTC
1 AATTAAATCAAATAAAATCTATTTC-AGGATTTATTC
45140881 TTGTTTTTTA
Statistics
Matches: 102, Mismatches: 14, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
82 3 0.03
83 17 0.17
84 65 0.64
85 17 0.17
ACGTcount: A:0.37, C:0.12, G:0.08, T:0.42
Consensus pattern (84 bp):
AATTAAATCAAATAAAATCTATTTCAGGATTTATTCCCGTCGTTTAACAAGATTCTATTCAATTT
AATTTTGTTTCCAAAGAAG
Found at i:45151437 original size:23 final size:23
Alignment explanation
Indices: 45151405--45151452 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
45151395 TGTAATTGTG
*
45151405 TTAACACCTTTCGATCCTTACGC
1 TTAACACCTTTCAATCCTTACGC
*
45151428 TTAACGCCTTTCAATCCTTACGC
1 TTAACACCTTTCAATCCTTACGC
45151451 TT
1 TT
45151453 CTTCTCTTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.21, C:0.33, G:0.08, T:0.38
Consensus pattern (23 bp):
TTAACACCTTTCAATCCTTACGC
Found at i:45159207 original size:28 final size:28
Alignment explanation
Indices: 45159176--45159233 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
45159166 AAATAAAAAT
* *
45159176 AAAGGGGT-TTAAAATTAAAAGAAAGTAA
1 AAAGGGGTCGTAAAA-TAAAAGAAAATAA
*
45159204 AAAGGGGTCGTAAAATAAAATAAAATAA
1 AAAGGGGTCGTAAAATAAAAGAAAATAA
45159232 AA
1 AA
45159234 TTAATAAGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 21 0.81
29 5 0.19
ACGTcount: A:0.60, C:0.02, G:0.19, T:0.19
Consensus pattern (28 bp):
AAAGGGGTCGTAAAATAAAAGAAAATAA
Found at i:45161857 original size:17 final size:18
Alignment explanation
Indices: 45161835--45161869 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
45161825 GATATGATAC
*
45161835 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
45161852 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
45161870 CAGGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:45162215 original size:35 final size:37
Alignment explanation
Indices: 45162152--45162230 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
45162142 ATTACAAAAT
45162152 CATAT-AT-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
45162188 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
45162223 CATATCAT
1 CATATCAT
45162231 TAAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 21 0.52
36 9 0.22
37 10 0.25
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:45162228 original size:14 final size:15
Alignment explanation
Indices: 45162173--45162228 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
45162163 AGATTGCATA
45162173 TCATATCTAAGATTG
1 TCATATCTAAGATTG
45162188 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
45162206 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
45162223 -CATATC
1 TCATATC
45162229 ATTAAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:45162238 original size:17 final size:19
Alignment explanation
Indices: 45162159--45162230 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
45162149 AATCATATAT
45162159 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
45162178 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
45162196 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
45162213 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
45162231 TAAAGATTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:45162638 original size:45 final size:44
Alignment explanation
Indices: 45162583--45162737 Score: 197
Period size: 45 Copynumber: 3.5 Consensus size: 44
45162573 AGAAGGCGAT
* *
45162583 ATCTGCTATCTTTGATCTGCTCTCCGTCTAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTC-CCGTCTAATACAGAGATGCCAA
* *
45162628 ATCTGTTATCTTCGATCTGCTCCCTGTCTAATATAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCC-GTCTAATACAGAGATGCCAA
* *
45162673 ATCTGCT-TCTTCAATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCT-CCCGTCTAATACAGAGATGCCAA
*
45162717 ATCTG-TCATCTTGGATCTGCT
1 ATCTGCT-ATCTTCGATCTGCT
45162738 TCGATGTAAA
Statistics
Matches: 95, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
43 1 0.01
44 37 0.39
45 57 0.60
ACGTcount: A:0.23, C:0.27, G:0.15, T:0.34
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGCTCCCGTCTAATACAGAGATGCCAA
Found at i:45162766 original size:89 final size:92
Alignment explanation
Indices: 45162597--45162827 Score: 228
Period size: 89 Copynumber: 2.6 Consensus size: 92
45162587 GCTATCTTTG
* * * * * ** *
45162597 ATCTGCTCTCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGC-TCCCTGTCTAATA
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTGGATCTGCTTCCATGTAAAACA
* *
45162661 TAGAGATGCCAAATCTGC-T-TCTTCA
66 TAGAGAGGCCAAATCTGCATGTCTGCA
* *
45162686 ATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTGGATCTGCTTCGATGTAAACAC
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTGGATCTGCTTCCATGTAAA-AC
* * *
45162751 AT-GA-AGGTCAGATCTGCGATGTCTGCG
65 ATAGAGAGGCCAAATCTGC-ATGTCTGCA
* *
45162778 ATCTGCGCCCCGTTTAATACAGAGATGCCAAA----TCATCTTGGATCTGCTTC
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTGGATCTGCTTC
45162828 AATGAAGGTC
Statistics
Matches: 119, Mismatches: 18, Indels: 11
0.80 0.12 0.07
Matches are distributed among these distances:
88 18 0.15
89 56 0.47
90 8 0.07
91 4 0.03
92 33 0.28
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (92 bp):
ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTGGATCTGCTTCCATGTAAAACA
TAGAGAGGCCAAATCTGCATGTCTGCA
Found at i:45163028 original size:78 final size:78
Alignment explanation
Indices: 45162916--45163399 Score: 731
Period size: 78 Copynumber: 6.2 Consensus size: 78
45162906 CGATATCTGC
* * *
45162916 TGTCTTTGCTCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
1 TGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
45162981 GTCAGATCTGCTA
66 GTCAGATCTGCTA
* **
45162994 TGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
1 TGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
* * *
45163059 GTGCA-ATTTGATG
66 GT-CAGATCTGCTA
*
45163072 TGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
1 TGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
45163137 GTCAGATCTGCTA
66 GTCAGATCTGCTA
* ** * *
45163150 TGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCATCTTGGATCTACTTCAATAAAG
1 TGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
**
45163215 GTCCA-ATCTGCCG
66 GT-CAGATCTGCTA
*
45163228 TGTCTTCGATCTGCTC-CCTGTCTAATACAGAGATGCTAAATCATCTTGGATCTGCTTCAATGAA
1 TGTCTTCGATCTGCTCTCC-GTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAA
45163292 GGTCAGATCTGCTA
65 GGTCAGATCTGCTA
* **
45163306 TGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
1 TGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
45163371 GTCAGATCTGCTA
66 GTCAGATCTGCTA
45163384 TGTCTTCGATCTGCTC
1 TGTCTTCGATCTGCTC
45163400 CTTGTAAACG
Statistics
Matches: 364, Mismatches: 36, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
77 6 0.02
78 352 0.97
79 6 0.02
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (78 bp):
TGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
GTCAGATCTGCTA
Found at i:45163200 original size:156 final size:155
Alignment explanation
Indices: 45162916--45163400 Score: 844
Period size: 156 Copynumber: 3.1 Consensus size: 155
45162906 CGATATCTGC
* *
45162916 TGTCTTTGCTCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
1 TGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
*
45162981 GTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCATCTTGGATC
66 GTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCATCTTGGATC
* *
45163046 TGCTTCAATGAAGGTGCAATTTGATG
131 TGCTTCAATGAAGGT-CAATCTGCTG
45163072 TGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
1 TGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
45163137 GTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCATCTTGGATC
66 GTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCATCTTGGATC
* * *
45163202 TACTTCAATAAAGGTCCAATCTGCCG
131 TGCTTCAATGAAGGT-CAATCTGCTG
* *
45163228 TGTCTTCGATCTGCTCCCTGTCTAATACAGAGATGCTAAATCATCTTGGATCTGCTTCAATGAAG
1 TGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
45163293 GTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCATCTTGGATC
66 GTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCATCTTGGATC
*
45163358 TGCTTCAATGAAGGTCAGATCTGCTA
131 TGCTTCAATGAAGGTCA-ATCTGCTG
45163384 TGTCTTCGATCTGCTCC
1 TGTCTTCGATCTGCTCC
45163401 TTGTAAACGC
Statistics
Matches: 313, Mismatches: 15, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
155 2 0.01
156 311 0.99
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (155 bp):
TGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
GTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCATCTTGGATC
TGCTTCAATGAAGGTCAATCTGCTG
Found at i:45163320 original size:37 final size:37
Alignment explanation
Indices: 45163271--45163398 Score: 98
Period size: 37 Copynumber: 3.4 Consensus size: 37
45163261 TGCTAAATCA
*
45163271 TCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATG
1 TCTTCGATCTGCTTCAATGAAGGTCAGATCTGCTATG
** * * ** * *
45163308 TCTTCGATCTGCTCTCCGTCAA-AT-ATGGAGATGCCAAATCA
1 TCTTCGATCTGCT-TCAATGAAGGTCA--GATCTG-C-TAT-G
*
45163349 TCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATG
1 TCTTCGATCTGCTTCAATGAAGGTCAGATCTGCTATG
45163386 TCTTCGATCTGCT
1 TCTTCGATCTGCT
45163399 CCTTGTAAAC
Statistics
Matches: 64, Mismatches: 19, Indels: 16
0.65 0.19 0.16
Matches are distributed among these distances:
36 1 0.02
37 25 0.39
38 11 0.17
39 2 0.03
40 11 0.17
41 13 0.20
42 1 0.02
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (37 bp):
TCTTCGATCTGCTTCAATGAAGGTCAGATCTGCTATG
Found at i:45165114 original size:3 final size:3
Alignment explanation
Indices: 45165088--45165151 Score: 51
Period size: 3 Copynumber: 20.3 Consensus size: 3
45165078 TATATCTTTG
*
45165088 TAT TAT ATAT TAT AAT TA- TAT TAT TAT ATAT TAT T-T GTAT TAT TAT
1 TAT TAT -TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT -TAT TAT TAT
*
45165134 TATT TAC TAT ATAT TAT T
1 TA-T TAT TAT -TAT TAT T
45165152 TTTCACAAAT
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
2 3 0.06
3 34 0.68
4 13 0.26
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:45165128 original size:19 final size:20
Alignment explanation
Indices: 45165088--45165265 Score: 88
Period size: 21 Copynumber: 8.9 Consensus size: 20
45165078 TATATCTTTG
45165088 TATTATATATTATAATTATAT
1 TATTATATATTAT-ATTATAT
*
45165109 TATTATATATTAT-TTGTAT
1 TATTATATATTATATTATAT
45165128 TATTAT-TATT-TACTATATAT
1 TATTATATATTATA-T-TATAT
* * *
45165148 TATT-TTTCA-CAAATTAGTAT
1 TATTATAT-ATTATATTA-TAT
* *
45165168 TATTTTACATTATTATT-TA-
1 TATTATATATTA-TATTATAT
* *
45165187 TATAATATTATTATATTGTAT
1 TATTATA-TATTATATTATAT
45165208 TATT-TATA-TATATTATAT
1 TATTATATATTATATTATAT
* * * *
45165226 TTTTTTACATATATACTATCA-
1 TATTATATAT-TATATTAT-AT
45165247 TATTATATATTATAATTAT
1 TATTATATATTAT-ATTAT
45165266 TTTAAATTAT
Statistics
Matches: 119, Mismatches: 20, Indels: 36
0.68 0.11 0.21
Matches are distributed among these distances:
17 1 0.01
18 16 0.13
19 29 0.24
20 31 0.26
21 38 0.32
22 4 0.03
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.58
Consensus pattern (20 bp):
TATTATATATTATATTATAT
Found at i:45165149 original size:36 final size:35
Alignment explanation
Indices: 45165074--45165150 Score: 95
Period size: 36 Copynumber: 2.1 Consensus size: 35
45165064 TTGCGTAATG
*
45165074 ATTATATATCTTTGTATTATATATTATAATTATATT
1 ATTATATATATTTGTATTATATATTAT-ATTATATT
45165110 ATTATATATTATTTGTATTAT-TATTAT-TTACTATAT
1 ATTATATA-TATTTGTATTATATATTATATTA-TAT-T
45165146 ATTAT
1 ATTAT
45165151 TTTTCACAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
34 3 0.08
35 3 0.08
36 20 0.54
37 11 0.30
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.60
Consensus pattern (35 bp):
ATTATATATATTTGTATTATATATTATATTATATT
Found at i:45165197 original size:27 final size:26
Alignment explanation
Indices: 45165165--45165223 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 26
45165155 CACAAATTAG
*
45165165 TATTATTTTACAT-TATTATTTATATAA
1 TATTATTATA-ATGTATTATTTATAT-A
*
45165192 TATTATTATATTGTATTATTTATATA
1 TATTATTATAATGTATTATTTATATA
45165218 TATTAT
1 TATTAT
45165224 ATTTTTTTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (26 bp):
TATTATTATAATGTATTATTTATATA
Found at i:45165596 original size:19 final size:19
Alignment explanation
Indices: 45165574--45165626 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 19
45165564 TAAATCATTA
*
45165574 TATTTTTGTTTTATATAAT
1 TATTTTTATTTTATATAAT
* *
45165593 TATTATTCTTTTATA-AAT
1 TATTTTTATTTTATATAAT
*
45165611 T-TTTTTATATTATATA
1 TATTTTTATTTTATATA
45165627 TTGTATATTA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
17 10 0.36
18 5 0.18
19 13 0.46
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (19 bp):
TATTTTTATTTTATATAAT
Found at i:45169365 original size:14 final size:14
Alignment explanation
Indices: 45169346--45169375 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
45169336 AAGATATTAT
45169346 TTTTCTAAATAAAG
1 TTTTCTAAATAAAG
*
45169360 TTTTCTAAATGAAG
1 TTTTCTAAATAAAG
45169374 TT
1 TT
45169376 GTACCAGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.07, G:0.10, T:0.47
Consensus pattern (14 bp):
TTTTCTAAATAAAG
Found at i:45169414 original size:14 final size:16
Alignment explanation
Indices: 45169395--45169431 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
45169385 TCGATATCCT
45169395 TTTGCAT-TCAT-GCA
1 TTTGCATCTCATAGCA
45169409 TTTGCATCTCATAGCA
1 TTTGCATCTCATAGCA
45169425 TTT-CATC
1 TTTGCATC
45169432 GCATCGTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 8 0.38
16 6 0.29
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.43
Consensus pattern (16 bp):
TTTGCATCTCATAGCA
Found at i:45169431 original size:15 final size:15
Alignment explanation
Indices: 45169395--45169444 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
45169385 TCGATATCCT
45169395 TTTGCAT-TCATGCA
1 TTTGCATCTCATGCA
45169409 TTTGCATCTCATAGCA
1 TTTGCATCTCAT-GCA
* *
45169425 TTT-CATCGCAT-CG
1 TTTGCATCTCATGCA
45169438 TTTGCAT
1 TTTGCAT
45169445 TCAAAGTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 4 0.13
14 10 0.32
15 11 0.35
16 6 0.19
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (15 bp):
TTTGCATCTCATGCA
Found at i:45175463 original size:45 final size:45
Alignment explanation
Indices: 45175390--45175478 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
45175380 TTTGAGGAGG
*
45175390 TTAGCTTGCGACTATGTCTTAGAAGGAGATATCTTATACAAGACT
1 TTAGCTTGCGACTATGTCTCAGAAGGAGATATCTTATACAAGACT
* *
45175435 TTAGCTTGCGACTATGTCTCAGACGGAGATATCTTGTACAAGAC
1 TTAGCTTGCGACTATGTCTCAGAAGGAGATATCTTATACAAGAC
45175479 ACGGAAAGAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.31
Consensus pattern (45 bp):
TTAGCTTGCGACTATGTCTCAGAAGGAGATATCTTATACAAGACT
Found at i:45177914 original size:206 final size:207
Alignment explanation
Indices: 45177554--45178104 Score: 813
Period size: 206 Copynumber: 2.7 Consensus size: 207
45177544 AGATCTGGCA
* * *
45177554 GAAGCAAGATCCAAGATGGTATGGCATCTTTGTACTTACAAGAAACAAACCGAAGACATAGCTGA
1 GAAGCAAGATCCAAGATGGTTTGGCATCCTTGTACTTACAAGAAACAAATCGAAGACATAGCTGA
* * * *
45177619 TTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTATGTATTGTCAAAG
66 TTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAG
* * **
45177684 AACAAATCGAAGTTTGGCGTCTCCATATTCGATGGAGAGTAGACACATAGCAGATCTGGCCTTCA
131 AACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTCACCTTCA
* *
45177749 TATG-TTTATACT
196 GATGATTT-CACT
* * *
45177761 GAAGC-AGATCCAAGATGATTTGGCATCCTTGTATTTACAAGAAACAAATCGAA-ATCATGGCTG
1 GAAGCAAGATCCAAGATGGTTTGGCATCCTTGTACTTACAAGAAACAAATCGAAGA-CATAGCTG
*
45177824 ATTTGGCTTTCACGTGCTTACGATGAAGAAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
65 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
*
45177889 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTCACCTTC
130 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTCACCTTC
45177954 AGATGATTTCACT
195 AGATGATTTCACT
* * * * *
45177967 GAAGCAAGATCCAAGATGGTTTGGTATTCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGG
1 GAAGCAAGATCCAAGATGGTTTGGCATCCTTGTACTTACAAGAAACAAATCGAAGACATAGCTGA
* * *
45178032 TTTGGTTTTCGCGTGCTTAC-ACTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 TTTGGCTTTCACGTGCTTACGA-TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
45178096 GAACAAATC
130 GAACAAATC
45178105 AAAGAAGCAG
Statistics
Matches: 309, Mismatches: 30, Indels: 10
0.89 0.09 0.03
Matches are distributed among these distances:
205 1 0.00
206 183 0.59
207 124 0.40
208 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (207 bp):
GAAGCAAGATCCAAGATGGTTTGGCATCCTTGTACTTACAAGAAACAAATCGAAGACATAGCTGA
TTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAG
AACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTCACCTTCA
GATGATTTCACT
Found at i:45179965 original size:20 final size:20
Alignment explanation
Indices: 45179930--45180118 Score: 75
Period size: 20 Copynumber: 9.8 Consensus size: 20
45179920 CTTTGTATTA
45179930 TATATTATAATATATTATAAT
1 TATATTAT-ATATATTATAAT
* *
45179951 TATATTATTTATATTATTAT
1 TATATTATATATATTATAAT
**
45179971 TAT-TTACTATATATTATTTT
1 TATATTA-TATATATTATAAT
* * *
45179991 TCACA-AAT-TAGTATTAT-TT
1 T-ATATTATATA-TATTATAAT
*
45180010 TACATTAT-TAT-TTAT-AT
1 TATATTATATATATTATAAT
* *
45180027 AATATTAT-TATATTGT-AT
1 TATATTATATATATTATAAT
45180045 TAT-TTATATATATTATATAT
1 TATATTATATATATTATA-AT
* * *
45180065 TAT-TTTTACATA-TATACT
1 TATATTATATATATTATAAT
45180083 T-TCA-TATTATATATTATAAT
1 TAT-ATTA-TATATATTATAAT
* *
45180103 TATTTTAAAT-TATTAT
1 TATATTATATATATTAT
45180119 GTCATTTTTC
Statistics
Matches: 132, Mismatches: 21, Indels: 32
0.71 0.11 0.17
Matches are distributed among these distances:
17 19 0.14
18 21 0.16
19 27 0.20
20 52 0.39
21 13 0.10
ACGTcount: A:0.38, C:0.04, G:0.01, T:0.58
Consensus pattern (20 bp):
TATATTATATATATTATAAT
Found at i:45179987 original size:50 final size:48
Alignment explanation
Indices: 45179928--45180118 Score: 146
Period size: 47 Copynumber: 3.9 Consensus size: 48
45179918 ATCTTTGTAT
45179928 TATATATTATAATATATTATAATTATATTATTTATATTATTATTATTTAC
1 TATATATTAT--TATATTATAATTATATTATTTATATTATTATTATTTAC
* *
45179978 TATATATTATT-T-TTCACAAATTAGTATTATTT-TA-CATTATTATTTA-
1 TATATATTATTATATT-A-TAATTA-TATTATTTATATTATTATTATTTAC
* *
45180024 TATAATATTATTATATTGT-ATTAT-TTATATATATTATATATTATTTTTAC
1 TAT-ATATTATTATATTATAATTATATTATTTATATTAT-TATTA--TTTAC
* *
45180074 ATATATACTT-TCATATTATATATTATAATTATTTTAAATTATTAT
1 -TATATA-TTATTATATTATA-ATTAT-ATTA-TTTATATTATTAT
45180119 GTCATTTTTC
Statistics
Matches: 112, Mismatches: 10, Indels: 34
0.72 0.06 0.22
Matches are distributed among these distances:
44 5 0.04
45 3 0.03
46 11 0.10
47 26 0.23
48 9 0.08
49 14 0.12
50 20 0.18
51 5 0.04
52 5 0.04
54 6 0.05
55 8 0.07
ACGTcount: A:0.38, C:0.04, G:0.01, T:0.58
Consensus pattern (48 bp):
TATATATTATTATATTATAATTATATTATTTATATTATTATTATTTAC
Found at i:45180034 original size:27 final size:26
Alignment explanation
Indices: 45180002--45180079 Score: 76
Period size: 27 Copynumber: 3.1 Consensus size: 26
45179992 CACAAATTAG
*
45180002 TATTATTTTACAT-TATTATTTATATAA
1 TATTATTATA-ATGTATTATTTATAT-A
*
45180029 TATTATTATATTGTATTATTTATATA
1 TATTATTATAATGTATTATTTATATA
*
45180055 TATTA-TAT-AT-TATT-TTTACATA
1 TATTATTATAATGTATTATTTATATA
45180077 TAT
1 TAT
45180080 ACTTTCATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
22 10 0.22
23 4 0.09
24 1 0.02
25 3 0.07
26 7 0.15
27 21 0.46
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (26 bp):
TATTATTATAATGTATTATTTATATA
Found at i:45180037 original size:13 final size:13
Alignment explanation
Indices: 45180015--45180068 Score: 51
Period size: 13 Copynumber: 4.3 Consensus size: 13
45180005 TATTTTACAT
45180015 TATTATTTATATAA
1 TATTA-TTATATAA
**
45180029 TATTATTATATTG
1 TATTATTATATAA
45180042 TATTATT-TAT-A
1 TATTATTATATAA
*
45180053 TA-TATTATATAT
1 TATTATTATATAA
45180065 TATT
1 TATT
45180069 TTTACATATA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
10 4 0.12
11 5 0.15
12 5 0.15
13 14 0.42
14 5 0.15
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (13 bp):
TATTATTATATAA
Found at i:45180045 original size:40 final size:43
Alignment explanation
Indices: 45179925--45180060 Score: 113
Period size: 40 Copynumber: 3.1 Consensus size: 43
45179915 TATATCTTTG
* * * *
45179925 TATTATATATTATAATA-TATTATAATTATATTATTTATATTAT
1 TATTATTTACTATAATATTATTAT-ATTGTATTATTTATATCAT
* *
45179968 TATTATTTACTATATATTATTTTTCACAAATTAGTATTATTT-TA-CAT
1 TATTATTTACTATA-A-TATTATT---ATATT-GTATTATTTATATCAT
45180015 TATTATTTA-TATAATATTATTATATTGTATTATTTATAT-A-
1 TATTATTTACTATAATATTATTATATTGTATTATTTATATCAT
45180055 TATTAT
1 TATTAT
45180061 ATATTATTTT
Statistics
Matches: 76, Mismatches: 8, Indels: 21
0.72 0.08 0.20
Matches are distributed among these distances:
40 15 0.20
41 7 0.09
43 12 0.16
44 7 0.09
45 3 0.04
46 7 0.09
47 11 0.14
48 5 0.07
49 9 0.12
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (43 bp):
TATTATTTACTATAATATTATTATATTGTATTATTTATATCAT
Found at i:45180116 original size:48 final size:49
Alignment explanation
Indices: 45180002--45180118 Score: 116
Period size: 50 Copynumber: 2.4 Consensus size: 49
45179992 CACAAATTAG
* * * *
45180002 TATTATTTTACATTATTATTTATATAATATTATTATATTGTATTATTTA
1 TATTATTTTAAATTATTATTTACATAATATTATCATATTATATTATTTA
* *
45180051 TATATATTATATATTATT-TTTACATATATACTT-TCATATTATA-TA-TTA
1 TAT-TATTTTAAATTATTATTTACATA-ATA-TTATCATATTATATTATTTA
45180099 TAATTATTTTAAATTATTAT
1 T-ATTATTTTAAATTATTAT
45180119 GTCATTTTTC
Statistics
Matches: 56, Mismatches: 7, Indels: 10
0.77 0.10 0.14
Matches are distributed among these distances:
48 16 0.29
49 15 0.27
50 23 0.41
51 2 0.04
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (49 bp):
TATTATTTTAAATTATTATTTACATAATATTATCATATTATATTATTTA
Found at i:45182547 original size:119 final size:119
Alignment explanation
Indices: 45182368--45182659 Score: 518
Period size: 119 Copynumber: 2.5 Consensus size: 119
45182358 GTGTTTACGT
* *
45182368 TGAAGCAAATCTAAGATGATTTGGCATCTATGTATTGTCAAAGAACAAATCGAAGTTTGGCGTCT
1 TGAAGCAGATCCAAGATGATTTGGCATCTATGTATTGTCAAAGAACAAATCGAAGTTTGGCGTCT
45182433 CCATATTCGATGGAGAGTAGACACATAGCAGATCTGGCCTTCATATGTTTATAC
66 CCATATTCGATGGAGAGTAGACACATAGCAGATCTGGCCTTCATATGTTTATAC
45182487 TGAAGCAGATCCAAGATGATTTGGCATCTATGTATTGTCAAAGAACAAATCGAAGTTTGGCGTCT
1 TGAAGCAGATCCAAGATGATTTGGCATCTATGTATTGTCAAAGAACAAATCGAAGTTTGGCGTCT
45182552 CCATATTCGATGGAGAGTAGACACATAGCAGATCTGGCCTTCATATGTTTATAC
66 CCATATTCGATGGAGAGTAGACACATAGCAGATCTGGCCTTCATATGTTTATAC
45182606 TGAAGCAGATCCAAGATGATTTGGCATCCT-TGTATT-T-ACAAGAAACAAATCGAA
1 TGAAGCAGATCCAAGATGATTTGGCAT-CTATGTATTGTCA-AAG-AACAAATCGAA
45182660 ATCATGGCTG
Statistics
Matches: 168, Mismatches: 2, Indels: 6
0.95 0.01 0.03
Matches are distributed among these distances:
117 1 0.01
118 4 0.02
119 161 0.96
120 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (119 bp):
TGAAGCAGATCCAAGATGATTTGGCATCTATGTATTGTCAAAGAACAAATCGAAGTTTGGCGTCT
CCATATTCGATGGAGAGTAGACACATAGCAGATCTGGCCTTCATATGTTTATAC
Found at i:45182936 original size:207 final size:206
Alignment explanation
Indices: 45182489--45182950 Score: 660
Period size: 207 Copynumber: 2.2 Consensus size: 206
45182479 GTTTATACTG
* * * *
45182489 AAGCAGATCCAAGATGATTTGGCATCTATGTATTGTCAAAGAACAAATCGAAGTTTGGCGTCTCC
1 AAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCC
* * ** * *
45182554 ATATTCGATGGAGAGTAGACACATAGCAGATCTGGCCTTCATATGTTTATACTGAAGCAGATCCA
66 ATATTCGACGGAGAGCAGACACATAGCAGATCTCACCTTCAGATGTTTACACTGAAGCAGATCCA
* *
45182619 AGATGATTTGGCATCCTTGTATTTACAAGAAACAAATCGAAATCATGGCTGATTTGGCTTTCACG
131 AGATGATTTGGCATCCTTGTACTTACAAGAAACAAATCGAAATCATAGCTGATTTGGCTTTCACG
*
45182684 TGCTTACGATG
196 TGCTTACGATA
*
45182695 AAGAAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCC
1 AAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCC
*
45182760 ATATTCGACGGAGGGCAGACACATAGCAGATCTCACCTTCAGATGATTT-CACTGAAGCAAGATC
66 ATATTCGACGGAGAGCAGACACATAGCAGATCTCACCTTCAGATG-TTTACACTGAAGC-AGATC
* * * * * * *
45182824 CAAGATGGTTTGGTATTCTTGTGCTTACAAGGAACAAATCGAAGA-CATAGCTGGTTTGGTTTTC
129 CAAGATGATTTGGCATCCTTGTACTTACAAGAAACAAATCGAA-ATCATAGCTGATTTGGCTTTC
*
45182888 GCGTGCTTAC-ACTA
193 ACGTGCTTACGA-TA
45182902 AAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATC
1 AAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATC
45182951 AAAGAAGCAG
Statistics
Matches: 228, Mismatches: 24, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
206 108 0.47
207 119 0.52
208 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (206 bp):
AAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCC
ATATTCGACGGAGAGCAGACACATAGCAGATCTCACCTTCAGATGTTTACACTGAAGCAGATCCA
AGATGATTTGGCATCCTTGTACTTACAAGAAACAAATCGAAATCATAGCTGATTTGGCTTTCACG
TGCTTACGATA
Found at i:45184811 original size:20 final size:20
Alignment explanation
Indices: 45184776--45184964 Score: 75
Period size: 20 Copynumber: 9.8 Consensus size: 20
45184766 CTTTGTATTA
45184776 TATATTATAATATATTATAAT
1 TATATTAT-ATATATTATAAT
* *
45184797 TATATTATTTATATTATTAT
1 TATATTATATATATTATAAT
**
45184817 TAT-TTACTATATATTATTTT
1 TATATTA-TATATATTATAAT
* * *
45184837 TCACA-AAT-TAGTATTAT-TT
1 T-ATATTATATA-TATTATAAT
*
45184856 TACATTAT-TAT-TTAT-AT
1 TATATTATATATATTATAAT
* *
45184873 AATATTAT-TATATTGT-AT
1 TATATTATATATATTATAAT
45184891 TAT-TTATATATATTATATAT
1 TATATTATATATATTATA-AT
* * *
45184911 TAT-TTTTACATA-TATACT
1 TATATTATATATATTATAAT
45184929 T-TCA-TATTATATATTATAAT
1 TAT-ATTA-TATATATTATAAT
* *
45184949 TATTTTAAAT-TATTAT
1 TATATTATATATATTAT
45184965 GTCATTTTTC
Statistics
Matches: 132, Mismatches: 21, Indels: 32
0.71 0.11 0.17
Matches are distributed among these distances:
17 19 0.14
18 21 0.16
19 27 0.20
20 52 0.39
21 13 0.10
ACGTcount: A:0.38, C:0.04, G:0.01, T:0.58
Consensus pattern (20 bp):
TATATTATATATATTATAAT
Found at i:45184833 original size:50 final size:48
Alignment explanation
Indices: 45184774--45184964 Score: 146
Period size: 47 Copynumber: 3.9 Consensus size: 48
45184764 ATCTTTGTAT
45184774 TATATATTATAATATATTATAATTATATTATTTATATTATTATTATTTAC
1 TATATATTAT--TATATTATAATTATATTATTTATATTATTATTATTTAC
* *
45184824 TATATATTATT-T-TTCACAAATTAGTATTATTT-TA-CATTATTATTTA-
1 TATATATTATTATATT-A-TAATTA-TATTATTTATATTATTATTATTTAC
* *
45184870 TATAATATTATTATATTGT-ATTAT-TTATATATATTATATATTATTTTTAC
1 TAT-ATATTATTATATTATAATTATATTATTTATATTAT-TATTA--TTTAC
* *
45184920 ATATATACTT-TCATATTATATATTATAATTATTTTAAATTATTAT
1 -TATATA-TTATTATATTATA-ATTAT-ATTA-TTTATATTATTAT
45184965 GTCATTTTTC
Statistics
Matches: 112, Mismatches: 10, Indels: 34
0.72 0.06 0.22
Matches are distributed among these distances:
44 5 0.04
45 3 0.03
46 11 0.10
47 26 0.23
48 9 0.08
49 14 0.12
50 20 0.18
51 5 0.04
52 5 0.04
54 6 0.05
55 8 0.07
ACGTcount: A:0.38, C:0.04, G:0.01, T:0.58
Consensus pattern (48 bp):
TATATATTATTATATTATAATTATATTATTTATATTATTATTATTTAC
Found at i:45184880 original size:27 final size:26
Alignment explanation
Indices: 45184848--45184925 Score: 76
Period size: 27 Copynumber: 3.1 Consensus size: 26
45184838 CACAAATTAG
*
45184848 TATTATTTTACAT-TATTATTTATATAA
1 TATTATTATA-ATGTATTATTTATAT-A
*
45184875 TATTATTATATTGTATTATTTATATA
1 TATTATTATAATGTATTATTTATATA
*
45184901 TATTA-TAT-AT-TATT-TTTACATA
1 TATTATTATAATGTATTATTTATATA
45184923 TAT
1 TAT
45184926 ACTTTCATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
22 10 0.22
23 4 0.09
24 1 0.02
25 3 0.07
26 7 0.15
27 21 0.46
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (26 bp):
TATTATTATAATGTATTATTTATATA
Found at i:45184883 original size:13 final size:13
Alignment explanation
Indices: 45184861--45184914 Score: 51
Period size: 13 Copynumber: 4.3 Consensus size: 13
45184851 TATTTTACAT
45184861 TATTATTTATATAA
1 TATTA-TTATATAA
**
45184875 TATTATTATATTG
1 TATTATTATATAA
45184888 TATTATT-TAT-A
1 TATTATTATATAA
*
45184899 TA-TATTATATAT
1 TATTATTATATAA
45184911 TATT
1 TATT
45184915 TTTACATATA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
10 4 0.12
11 5 0.15
12 5 0.15
13 14 0.42
14 5 0.15
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (13 bp):
TATTATTATATAA
Found at i:45184891 original size:40 final size:43
Alignment explanation
Indices: 45184771--45184906 Score: 113
Period size: 40 Copynumber: 3.1 Consensus size: 43
45184761 TATATCTTTG
* * * *
45184771 TATTATATATTATAATA-TATTATAATTATATTATTTATATTAT
1 TATTATTTACTATAATATTATTAT-ATTGTATTATTTATATCAT
* *
45184814 TATTATTTACTATATATTATTTTTCACAAATTAGTATTATTT-TA-CAT
1 TATTATTTACTATA-A-TATTATT---ATATT-GTATTATTTATATCAT
45184861 TATTATTTA-TATAATATTATTATATTGTATTATTTATAT-A-
1 TATTATTTACTATAATATTATTATATTGTATTATTTATATCAT
45184901 TATTAT
1 TATTAT
45184907 ATATTATTTT
Statistics
Matches: 76, Mismatches: 8, Indels: 21
0.72 0.08 0.20
Matches are distributed among these distances:
40 15 0.20
41 7 0.09
43 12 0.16
44 7 0.09
45 3 0.04
46 7 0.09
47 11 0.14
48 5 0.07
49 9 0.12
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (43 bp):
TATTATTTACTATAATATTATTATATTGTATTATTTATATCAT
Found at i:45184962 original size:48 final size:49
Alignment explanation
Indices: 45184848--45184964 Score: 116
Period size: 50 Copynumber: 2.4 Consensus size: 49
45184838 CACAAATTAG
* * * *
45184848 TATTATTTTACATTATTATTTATATAATATTATTATATTGTATTATTTA
1 TATTATTTTAAATTATTATTTACATAATATTATCATATTATATTATTTA
* *
45184897 TATATATTATATATTATT-TTTACATATATACTT-TCATATTATA-TA-TTA
1 TAT-TATTTTAAATTATTATTTACATA-ATA-TTATCATATTATATTATTTA
45184945 TAATTATTTTAAATTATTAT
1 T-ATTATTTTAAATTATTAT
45184965 GTCATTTTTC
Statistics
Matches: 56, Mismatches: 7, Indels: 10
0.77 0.10 0.14
Matches are distributed among these distances:
48 16 0.29
49 15 0.27
50 23 0.41
51 2 0.04
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (49 bp):
TATTATTTTAAATTATTATTTACATAATATTATCATATTATATTATTTA
Found at i:45194824 original size:17 final size:17
Alignment explanation
Indices: 45194802--45194834 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
45194792 GATATGATAC
45194802 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
45194819 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
45194835 AAATCAGGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:45194835 original size:18 final size:17
Alignment explanation
Indices: 45194802--45194835 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
45194792 GATATGATAC
*
45194802 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
45194819 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
45194836 AATCAGGGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:45195127 original size:22 final size:21
Alignment explanation
Indices: 45195092--45195167 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
45195082 AAAAGGTATC
* *
45195092 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
45195113 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
45195136 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
45195155 TGC-AATCATATCT
1 TACAAATCATATCT
45195168 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:45195184 original size:35 final size:37
Alignment explanation
Indices: 45195121--45195218 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
45195111 ATTACAAAAT
45195121 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
45195157 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
45195192 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
45195219 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:45195226 original size:17 final size:19
Alignment explanation
Indices: 45195128--45195218 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
45195118 AATCATATCT
45195128 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
45195147 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
45195165 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
45195182 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
45195201 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
45195219 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:45207117 original size:25 final size:25
Alignment explanation
Indices: 45207089--45207136 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
45207079 TTATATTATG
* * *
45207089 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACTATTATACCCCTAGGTA
45207114 AAAATGACTATTATACCCCTAGG
1 AAAATGACTATTATACCCCTAGG
45207137 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (25 bp):
AAAATGACTATTATACCCCTAGGTA
Found at i:45207326 original size:26 final size:25
Alignment explanation
Indices: 45207271--45207374 Score: 115
Period size: 25 Copynumber: 4.2 Consensus size: 25
45207261 GAGGAAGTGC
* * **
45207271 AAAAAGGGCTATGCCTCAGTTTACCG
1 AAAAAGGGCTTTGCCCCAGTTTA-TT
45207297 AAAAAGGGCTTTTGCCCCAGTTTATT
1 AAAAAGGGC-TTTGCCCCAGTTTATT
45207323 AAAAA-GGCTTTTGCCCCAGTTTA-T
1 AAAAAGGGC-TTTGCCCCAGTTTATT
*
45207347 CAAAAGGGCTTTGCCCCAG-TTATT
1 AAAAAGGGCTTTGCCCCAGTTTATT
45207371 AAAA
1 AAAA
45207375 GAGGCTAGGC
Statistics
Matches: 69, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
23 3 0.04
24 19 0.28
25 21 0.30
26 14 0.20
27 12 0.17
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (25 bp):
AAAAAGGGCTTTGCCCCAGTTTATT
Found at i:45207332 original size:25 final size:25
Alignment explanation
Indices: 45207297--45207380 Score: 118
Period size: 25 Copynumber: 3.4 Consensus size: 25
45207287 CAGTTTACCG
45207297 AAAAAGGGCTTTTGCCCCAGTTTATT
1 AAAAA-GGCTTTTGCCCCAGTTTATT
*
45207323 AAAAAGGCTTTTGCCCCAGTTTATC
1 AAAAAGGCTTTTGCCCCAGTTTATT
*
45207348 AAAAGGGC-TTTGCCCCAG-TTATT
1 AAAAAGGCTTTTGCCCCAGTTTATT
45207371 AAAAGAGGCT
1 AAAA-AGGCT
45207381 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
23 8 0.15
24 13 0.25
25 26 0.50
26 5 0.10
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (25 bp):
AAAAAGGCTTTTGCCCCAGTTTATT
Found at i:45207391 original size:49 final size:52
Alignment explanation
Indices: 45207272--45207392 Score: 148
Period size: 49 Copynumber: 2.4 Consensus size: 52
45207262 AGGAAGTGCA
45207272 AAAAG-GGCTATGCCT-CAGTTTACCGAAAAAGGGCTTTTGCCCCAGTTTATT
1 AAAAGAGGCTATGCCTCCAGTTTACC-AAAAAGGGCTTTTGCCCCAGTTTATT
* *
45207323 AAAA-AGGCTTTTGCC-CCAGTTTATC-AAAAGGGC-TTTGCCCCAG-TTATT
1 AAAAGAGGC-TATGCCTCCAGTTTACCAAAAAGGGCTTTTGCCCCAGTTTATT
*
45207371 AAAAGAGGCTAGGCCTCCAGTT
1 AAAAGAGGCTATGCCTCCAGTT
45207393 ATATGATAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
48 13 0.21
49 20 0.33
50 8 0.13
51 7 0.11
52 13 0.21
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (52 bp):
AAAAGAGGCTATGCCTCCAGTTTACCAAAAAGGGCTTTTGCCCCAGTTTATT
Found at i:45207624 original size:31 final size:31
Alignment explanation
Indices: 45207585--45207666 Score: 128
Period size: 31 Copynumber: 2.6 Consensus size: 31
45207575 ATACCGTTTA
*
45207585 CAGTAATATGAAATATGTAAAGGCTTCGGCC
1 CAGTAATATGAAATATGAAAAGGCTTCGGCC
*
45207616 TAGTAATATGAAATATGAAAAGGCTTCGGCC
1 CAGTAATATGAAATATGAAAAGGCTTCGGCC
**
45207647 CAGTGTTATGAAATATGAAA
1 CAGTAATATGAAATATGAAA
45207667 TATGAAAAGG
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (31 bp):
CAGTAATATGAAATATGAAAAGGCTTCGGCC
Found at i:45207632 original size:38 final size:37
Alignment explanation
Indices: 45207589--45207689 Score: 106
Period size: 31 Copynumber: 2.8 Consensus size: 37
45207579 CGTTTACAGT
*
45207589 AATATGAAATATGTAAAGGCTTCGGCCTAGTAATATGA
1 AATATGAAATATG-AAAGGCTTCGGCCCAGTAATATGA
**
45207627 AATATG----A--AAAGGCTTCGGCCCAGTGTTATGA
1 AATATGAAATATGAAAGGCTTCGGCCCAGTAATATGA
*
45207658 AATATGAAATATGAAAAGGCTTCAGCCCAGTA
1 AATATGAAATATG-AAAGGCTTCGGCCCAGTA
45207690 TACGCTGAGT
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
31 27 0.53
34 1 0.02
35 1 0.02
38 22 0.43
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.26
Consensus pattern (37 bp):
AATATGAAATATGAAAGGCTTCGGCCCAGTAATATGA
Found at i:45208835 original size:18 final size:18
Alignment explanation
Indices: 45208812--45208849 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
45208802 ACGGTAGGAG
45208812 TAAGAACTGTAGCTAGGC
1 TAAGAACTGTAGCTAGGC
45208830 TAAGAACTGTAGCTAGGC
1 TAAGAACTGTAGCTAGGC
45208848 TA
1 TA
45208850 TGACGTTGCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.24
Consensus pattern (18 bp):
TAAGAACTGTAGCTAGGC
Found at i:45212800 original size:92 final size:92
Alignment explanation
Indices: 45212643--45212827 Score: 325
Period size: 92 Copynumber: 2.0 Consensus size: 92
45212633 CTATATGGGC
45212643 GAAGGTGTCGTTCGCCTACTTGTTGGGCAGAGTTGGGGGAAAGGCAAGTACTTGGGCCAGAGTTG
1 GAAGGTGTCGTTCGCCTACTTGTTGGGCAGAGTTGGGGGAAAGGCAAGTACTTGGGCCAGAGTTG
45212708 GTAGCAGATACAGAAAACAAGATTAAG
66 GTAGCAGATACAGAAAACAAGATTAAG
45212735 GAAGGTGTCGTTCGCCTACTTGTTGGGCAGAGTTGGGGGAAAGGCAAGTACTTGGGCCAGAGTTG
1 GAAGGTGTCGTTCGCCTACTTGTTGGGCAGAGTTGGGGGAAAGGCAAGTACTTGGGCCAGAGTTG
* * * * *
45212800 GTAGCGGATGCTGAAGACAAGGTTAAG
66 GTAGCAGATACAGAAAACAAGATTAAG
45212827 G
1 G
45212828 TGATCAGGAA
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 88 1.00
ACGTcount: A:0.26, C:0.14, G:0.37, T:0.22
Consensus pattern (92 bp):
GAAGGTGTCGTTCGCCTACTTGTTGGGCAGAGTTGGGGGAAAGGCAAGTACTTGGGCCAGAGTTG
GTAGCAGATACAGAAAACAAGATTAAG
Found at i:45215194 original size:20 final size:20
Alignment explanation
Indices: 45215169--45215215 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
45215159 GTTTTGATAT
45215169 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
*
45215189 ACATGATATGTATGGTATGC
1 ACATGATATGTATGATATGC
*
45215209 AGATGAT
1 ACATGAT
45215216 GTATTCATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 22 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.09, G:0.23, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:45215353 original size:24 final size:25
Alignment explanation
Indices: 45215273--45215370 Score: 110
Period size: 25 Copynumber: 3.9 Consensus size: 25
45215263 AGAAGGCCTA
*
45215273 TGCCCCAGTTTACCGAAAAGGGCTTT
1 TGCCCCAGTTTATC-AAAAGGGCTTT
** * *
45215299 TGCCTTAGTTTATTAAAAAGGCTTT
1 TGCCCCAGTTTATCAAAAGGGCTTT
45215324 TGCCCCAGTTTATCAAAAGGGCTTT
1 TGCCCCAGTTTATCAAAAGGGCTTT
*
45215349 T-CCCCAG-TTATTAAAAGAGGCT
1 TGCCCCAGTTTATCAAAAG-GGCT
45215371 AGGCCTCCAG
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
23 9 0.15
24 10 0.16
25 32 0.52
26 10 0.16
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (25 bp):
TGCCCCAGTTTATCAAAAGGGCTTT
Found at i:45215613 original size:31 final size:31
Alignment explanation
Indices: 45215575--45215641 Score: 125
Period size: 31 Copynumber: 2.2 Consensus size: 31
45215565 ATACCGTTTA
*
45215575 CAGTAATATGAAATATGTAAAGGCTTCGGCC
1 CAGTAATATGAAATATGAAAAGGCTTCGGCC
45215606 CAGTAATATGAAATATGAAAAGGCTTCGGCC
1 CAGTAATATGAAATATGAAAAGGCTTCGGCC
45215637 CAGTA
1 CAGTA
45215642 TACGCTGAGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.24
Consensus pattern (31 bp):
CAGTAATATGAAATATGAAAAGGCTTCGGCC
Found at i:45218799 original size:17 final size:17
Alignment explanation
Indices: 45218777--45218810 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
45218767 GAGCTATGGC
45218777 TCCGCGAACCTACCTAA
1 TCCGCGAACCTACCTAA
45218794 TCCGCGAACCTACCTAA
1 TCCGCGAACCTACCTAA
45218811 ACATACCCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.41, G:0.12, T:0.18
Consensus pattern (17 bp):
TCCGCGAACCTACCTAA
Found at i:45221742 original size:18 final size:18
Alignment explanation
Indices: 45221721--45221759 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
45221711 ACTTTAGTTC
* *
45221721 TTTTTCTTTTTGTTTTTA
1 TTTTTCCTTTTATTTTTA
45221739 TTTTTCCTTTTATTTTTA
1 TTTTTCCTTTTATTTTTA
45221757 TTT
1 TTT
45221760 CTATTTCCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.08, C:0.08, G:0.03, T:0.82
Consensus pattern (18 bp):
TTTTTCCTTTTATTTTTA
Found at i:45237382 original size:6 final size:5
Alignment explanation
Indices: 45237347--45237381 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
45237337 TCAATTTGTG
*
45237347 AAAAA AAAAT AAAAT AAAAT AAAAT AAAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AAAA
45237382 AAGAACACAC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (5 bp):
AAAAT
Found at i:45237498 original size:50 final size:50
Alignment explanation
Indices: 45237423--45237626 Score: 390
Period size: 50 Copynumber: 4.1 Consensus size: 50
45237413 TCGAGAAAAT
45237423 CTAATCAATATAAAATAGATGGAGTTTAATAAGGTTTAAAAAACCTTATC
1 CTAATCAATATAAAATAGATGGAGTTTAATAAGGTTTAAAAAACCTTATC
45237473 CTAATCAATATAAAATAGATGGAGTTTAATAAGGTTTAAAAAACCTTATC
1 CTAATCAATATAAAATAGATGGAGTTTAATAAGGTTTAAAAAACCTTATC
*
45237523 CTAATCAATATAAAATAGATGGAGTTTAATAAGGTTTAAAAAACCTTATT
1 CTAATCAATATAAAATAGATGGAGTTTAATAAGGTTTAAAAAACCTTATC
*
45237573 CTAATCAATATAAAATAGATGGAGTTTAATAAGGTTTAAAAAACCTTATT
1 CTAATCAATATAAAATAGATGGAGTTTAATAAGGTTTAAAAAACCTTATC
45237623 CTAA
1 CTAA
45237627 AATAAAATAA
Statistics
Matches: 153, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
50 153 1.00
ACGTcount: A:0.46, C:0.09, G:0.12, T:0.33
Consensus pattern (50 bp):
CTAATCAATATAAAATAGATGGAGTTTAATAAGGTTTAAAAAACCTTATC
Found at i:45240040 original size:38 final size:40
Alignment explanation
Indices: 45239997--45240199 Score: 162
Period size: 38 Copynumber: 4.8 Consensus size: 40
45239987 TTTCAAATTA
*
45239997 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T-T
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTTAT
* *
45240035 ACATGTTTAACCATGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT-AT
* * *
45240076 AAATCAATATATGTAACCGTGGCATATCCATTTAGCACCACGTTACGT
1 --A-C-ATGTA--TAACCGTGGTATATCCACTTAGCACCACGTTA--T
* * *
45240124 ATCAATATGTGTAATCGTGGTATATCCACTTAGCAACACG-T-T
1 A-C---ATGTATAACCGTGGTATATCCACTTAGCACCACGTTAT
* *
45240166 ACACGTATAACAGTGGTATATCCACTTAGCACCA
1 ACATGTATAACCGTGGTATATCCACTTAGCACCA
45240200 TGTTTTTCCA
Statistics
Matches: 132, Mismatches: 20, Indels: 26
0.74 0.11 0.15
Matches are distributed among these distances:
38 60 0.45
39 1 0.01
41 2 0.02
42 2 0.02
43 1 0.01
44 1 0.01
45 4 0.03
46 29 0.22
47 28 0.21
48 4 0.03
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (40 bp):
ACATGTATAACCGTGGTATATCCACTTAGCACCACGTTAT
Found at i:45240149 original size:46 final size:47
Alignment explanation
Indices: 45240042--45240168 Score: 168
Period size: 46 Copynumber: 2.7 Consensus size: 47
45240032 GTTACATGTT
*
45240042 TAACCATGGTATATCCACTTAGCACCACGTTA-ATAAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACAT-AATCAATATATG
* * * *
45240089 TAACCGTGGCATATCCATTTAGCACCACGTTACGT-ATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATAATCAATATATG
* *
45240135 TAATCGTGGTATATCCACTTAGCAACACGTTACA
1 TAACCGTGGTATATCCACTTAGCACCACGTTACA
45240169 CGTATAACAG
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
46 39 0.57
47 29 0.42
48 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (47 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACATAATCAATATATG
Found at i:45244304 original size:39 final size:39
Alignment explanation
Indices: 45244261--45244586 Score: 438
Period size: 39 Copynumber: 8.3 Consensus size: 39
45244251 AAAAAATCTT
*
45244261 ATTCAGTATAATCAGTGGATAATGCTCGTTTGAGCAAGC
1 ATTCAGCATAATCAGTGGATAATGCTCGTTTGAGCAAGC
* * * *
45244300 ATTCAGCATGATTAGTGGATAGTGCTTGTTTGAGCAAGC
1 ATTCAGCATAATCAGTGGATAATGCTCGTTTGAGCAAGC
* *
45244339 ATTCAGCATAATCAGTGGATATTGCTCATTTGAGCAAGC
1 ATTCAGCATAATCAGTGGATAATGCTCGTTTGAGCAAGC
*
45244378 ATTCAGCATAATCAGTGGATATTGCTCGTTTGAGCAAGC
1 ATTCAGCATAATCAGTGGATAATGCTCGTTTGAGCAAGC
*
45244417 ATTCAGCATAATTAGTGGATAATGCTCGTTTTGAGCAAGC
1 ATTCAGCATAATCAGTGGATAATGCTCG-TTTGAGCAAGC
* *
45244457 ATTCAACATAATTAGTGGATAAT-CTCGTTTGAGCAAGC
1 ATTCAGCATAATCAGTGGATAATGCTCGTTTGAGCAAGC
* * *
45244495 ATTCAGTATAATCAGTGGATAATGCTCATTTGAGCAAAC
1 ATTCAGCATAATCAGTGGATAATGCTCGTTTGAGCAAGC
** * * * *
45244534 ATTCAATATAATCAGTGGATATTGTTCGTTTGAACAAATC
1 ATTCAGCATAATCAGTGGATAATGCTCGTTTGAGC-AAGC
*
45244574 ATTCAGTATAATC
1 ATTCAGCATAATC
45244587 GATATTCCAT
Statistics
Matches: 258, Mismatches: 26, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
38 31 0.12
39 179 0.69
40 48 0.19
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (39 bp):
ATTCAGCATAATCAGTGGATAATGCTCGTTTGAGCAAGC
Found at i:45252077 original size:22 final size:21
Alignment explanation
Indices: 45252047--45252112 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
45252037 TACAAATTAA
45252047 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
45252069 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
45252090 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
45252109 ATCT
1 ATCT
45252113 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:45252099 original size:19 final size:19
Alignment explanation
Indices: 45252064--45252161 Score: 164
Period size: 19 Copynumber: 5.2 Consensus size: 19
45252054 AGATTACAAG
45252064 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
45252085 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
45252104 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
45252121 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
45252140 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
45252159 ATC
1 ATC
45252162 CTTAAAGATT
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.23
19 49 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:45252128 original size:36 final size:37
Alignment explanation
Indices: 45252064--45252161 Score: 153
Period size: 36 Copynumber: 2.6 Consensus size: 37
45252054 AGATTACAAG
45252064 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
45252104 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
45252140 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
45252162 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
36 36 0.64
38 11 0.20
39 1 0.02
40 8 0.14
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:45252783 original size:44 final size:44
Alignment explanation
Indices: 45252734--45252971 Score: 226
Period size: 44 Copynumber: 5.6 Consensus size: 44
45252724 TCGAAATGGA
* *
45252734 GATGCCAGATCTGTTATCTTTGATTTGTTCCCTATAAACACAGG
1 GATGCCAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGG
45252778 GATGCC--A-----TATCTTCGATTTGTTCCCTATAAACACAGG
1 GATGCCAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGG
* ** * ** * *
45252815 GATG--ACATGCTGAAATCTTCGATCTGCTTTGCTATAAGCATAGG
1 GATGCCAGAT-CTGCTATCTTCGATTTG-TTCCCTATAAACACAGG
* *
45252859 AATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGG
1 GATGCCAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGG
* * *
45252903 GATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGG
1 GATGCCAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGG
* **
45252947 GATGCCATA-CTGAAATCTTCGATTT
1 GATGCCAGATCTGCTATCTTCGATTT
45252972 TCTTTGCTAT
Statistics
Matches: 157, Mismatches: 26, Indels: 23
0.76 0.13 0.11
Matches are distributed among these distances:
37 34 0.22
42 1 0.01
43 23 0.15
44 82 0.52
45 14 0.09
46 3 0.02
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.33
Consensus pattern (44 bp):
GATGCCAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGG
Found at i:45252789 original size:37 final size:37
Alignment explanation
Indices: 45252748--45252818 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
45252738 CCAGATCTGT
*
45252748 TATCTTTGATTTGTTCCCTATAAACACAGGGATGCCA
1 TATCTTCGATTTGTTCCCTATAAACACAGGGATGCCA
45252785 TATCTTCGATTTGTTCCCTATAAACACAGGGATG
1 TATCTTCGATTTGTTCCCTATAAACACAGGGATG
45252819 ACATGCTGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (37 bp):
TATCTTCGATTTGTTCCCTATAAACACAGGGATGCCA
Found at i:45252969 original size:132 final size:125
Alignment explanation
Indices: 45252739--45253004 Score: 397
Period size: 132 Copynumber: 2.1 Consensus size: 125
45252729 ATGGAGATGC
* * * *
45252739 CAGATCTGTTATCTTTGATTTGTTCCCTATAAACACAGGGATGCCATATCTTCGATTTGTTCCCT
1 CAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATATCTTCAACTTGTTCCCT
*
45252804 ATAAACACAGGGATGACATGCTGAAATCTTCGATCTGCTTTGCTATAAGCATAGGAATGT
66 ATAAACACAGGGATGACATACTGAAATCTTCGATCTGCTTTGCTATAAGCATAGGAATGT
45252864 CAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTT
1 CAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCC--A-----TATCTTCAACTT
* * *
45252929 GTTCCCTATAAACACAGGGATGCCATACTGAAATCTTCGATTTTCTTTGCTATAAGCATAGGAAT
59 GTTCCCTATAAACACAGGGATGACATACTGAAATCTTCGATCTGCTTTGCTATAAGCATAGGAAT
45252994 GT
124 GT
45252996 CAGATCTGC
1 CAGATCTGC
45253005 GTGGAAATTG
Statistics
Matches: 126, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
125 43 0.34
127 1 0.01
132 82 0.65
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.33
Consensus pattern (125 bp):
CAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATATCTTCAACTTGTTCCCT
ATAAACACAGGGATGACATACTGAAATCTTCGATCTGCTTTGCTATAAGCATAGGAATGT
Found at i:45253148 original size:21 final size:21
Alignment explanation
Indices: 45253109--45253148 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
45253099 TTTATTTCAA
*
45253109 AATATAAATGATATAGAATAT
1 AATATAAATGAAATAGAATAT
*
45253130 AATATAAATGAAATGGAAT
1 AATATAAATGAAATAGAAT
45253149 TACTGATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.12, T:0.30
Consensus pattern (21 bp):
AATATAAATGAAATAGAATAT
Found at i:45253189 original size:21 final size:21
Alignment explanation
Indices: 45253156--45253196 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
45253146 AATTACTGAT
* *
45253156 AAAAGTTCTATATCTCTATAG
1 AAAAGTTCGATATATCTATAG
*
45253177 AAAAGTTGGATATATCTATA
1 AAAAGTTCGATATATCTATA
45253197 TAATCAATCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (21 bp):
AAAAGTTCGATATATCTATAG
Found at i:45253293 original size:23 final size:19
Alignment explanation
Indices: 45253246--45253304 Score: 91
Period size: 19 Copynumber: 3.1 Consensus size: 19
45253236 ATATCTATGG
45253246 ATTAATAATACTCTATATA
1 ATTAATAATACTCTATATA
45253265 ATTAATAATACTCTATATA
1 ATTAATAATACTCTATATA
* *
45253284 GATAAATAATAATCTATATA
1 -ATTAATAATACTCTATATA
45253304 A
1 A
45253305 CATAATCTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 20 0.54
20 17 0.46
ACGTcount: A:0.51, C:0.08, G:0.02, T:0.39
Consensus pattern (19 bp):
ATTAATAATACTCTATATA
Found at i:45253311 original size:14 final size:14
Alignment explanation
Indices: 45253292--45253320 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
45253282 TAGATAAATA
45253292 ATAATCTATATAAC
1 ATAATCTATATAAC
45253306 ATAATCTATATAAC
1 ATAATCTATATAAC
45253320 A
1 A
45253321 AAGTAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAATCTATATAAC
Found at i:45254127 original size:88 final size:86
Alignment explanation
Indices: 45253976--45254403 Score: 325
Period size: 88 Copynumber: 4.9 Consensus size: 86
45253966 CAGATCTGCT
* * * * *
45253976 ATCTTCGATCTG-TTCCCTATAAACATAGGGATGCCAAATCTGCTATCTTCAACTTTTTCCCTAT
1 ATCTTCGATCTGCTTCCCTATAAACACAGGGATGTCAGATCTGCTATCTTCATC-TGTTCCCTAT
45254040 AAACACAGGGATGCCATGCTGAA
65 AAACACAGGGATGCCAT-CTGAA
* * *
45254063 ATCTTCGATCTGCTTCGCTGTAAGCACA-GGAGTGTCAGATCTGCTATCTTCGATCTGTTCCCTA
1 ATCTTCGATCTGCTTCCCTATAAACACAGGGA-TGTCAGATCTGCTATCTTC-ATCTGTTCCCTA
* * **
45254127 TAAACACAAGGATTCCAAATCTGCT
64 TAAACACAGGGATGCC--ATCTGAA
* * * ** *
45254152 ATCTTC-AACTTG-TTCCCTATAAACATAGGGATG-C-CATGCTGAAATCTTCGATCTGCTTCGC
1 ATCTTCGATC-TGCTTCCCTATAAACACAGGGATGTCAGAT-CTGCTATCTTC-ATCTG-TTCCC
* * **
45254213 TGTAAACACAGGAGTAT-CAGATCTGCT
62 TATAAACACAGG-G-ATGC-CATCTGAA
* * * * * *
45254240 ATCTTCGATCT-ATTCCCTATAAACACAGGGATGCCAAATCTTCTATATTCAACTTGTTCCCTAT
1 ATCTTCGATCTGCTTCCCTATAAACACAGGGATGTCAGATCTGCTATCTTCATC-TGTTCCCTAT
45254304 AAACACAGGGATGCCATCCTGAA
65 AAACACAGGGATGCCAT-CTGAA
* * * * * * *
45254327 ATCTTCGATCTGCTTCGCTGTAAGCACA-AGAGTGTTAGATCTACTATCTTCAATCTATTCCCTA
1 ATCTTCGATCTGCTTCCCTATAAACACAGGGA-TGTCAGATCTGCTATCTTC-ATCTGTTCCCTA
45254391 TAAACACAGGGAT
64 TAAACACAGGGAT
45254404 CCCAAATCTT
Statistics
Matches: 270, Mismatches: 49, Indels: 43
0.75 0.14 0.12
Matches are distributed among these distances:
86 6 0.02
87 49 0.18
88 177 0.66
89 32 0.12
90 6 0.02
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (86 bp):
ATCTTCGATCTGCTTCCCTATAAACACAGGGATGTCAGATCTGCTATCTTCATCTGTTCCCTATA
AACACAGGGATGCCATCTGAA
Found at i:45254413 original size:132 final size:132
Alignment explanation
Indices: 45253872--45254412 Score: 895
Period size: 132 Copynumber: 4.1 Consensus size: 132
45253862 CCAACAATTA
45253872 GGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTC
1 GGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTC
* *
45253937 GATCTGCTTCGCTGTAAGTAC-AGAAGTGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACA
66 GATCTGCTTCGCTGTAAGCACAAG-AGTGTCAGATCTGCTATCTTCGATCTATTCCCTATAAACA
*
45254001 TAG
130 CAG
*
45254004 GGATGCCAAATCTGCTATCTTCAACTTTTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTC
1 GGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTC
* *
45254069 GATCTGCTTCGCTGTAAGCACAGGAGTGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACAC
66 GATCTGCTTCGCTGTAAGCACAAGAGTGTCAGATCTGCTATCTTCGATCTATTCCCTATAAACAC
*
45254134 AA
131 AG
* *
45254136 GGATTCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACATAGGGATGCCATGCTGAAATCTTC
1 GGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTC
* * *
45254201 GATCTGCTTCGCTGTAAACACAGGAGTATCAGATCTGCTATCTTCGATCTATTCCCTATAAACAC
66 GATCTGCTTCGCTGTAAGCACAAGAGTGTCAGATCTGCTATCTTCGATCTATTCCCTATAAACAC
45254266 AG
131 AG
* * *
45254268 GGATGCCAAATCTTCTATATTCAACTTGTTCCCTATAAACACAGGGATGCCATCCTGAAATCTTC
1 GGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTC
* * *
45254333 GATCTGCTTCGCTGTAAGCACAAGAGTGTTAGATCTACTATCTTCAATCTATTCCCTATAAACAC
66 GATCTGCTTCGCTGTAAGCACAAGAGTGTCAGATCTGCTATCTTCGATCTATTCCCTATAAACAC
45254398 AG
131 AG
*
45254400 GGATCCCAAATCT
1 GGATGCCAAATCT
45254413 TGTTTCTCTA
Statistics
Matches: 384, Mismatches: 24, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
132 383 1.00
133 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (132 bp):
GGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTC
GATCTGCTTCGCTGTAAGCACAAGAGTGTCAGATCTGCTATCTTCGATCTATTCCCTATAAACAC
AG
Found at i:45255313 original size:1 final size:1
Alignment explanation
Indices: 45255303--45255354 Score: 50
Period size: 1 Copynumber: 52.0 Consensus size: 1
45255293 GGCCTCTCCA
* * * * * *
45255303 TTTTTCTTTTTTTTCTTTTTATTGTTTTTTTTCTTTTTTCTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
45255355 GAAATAGAAG
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.02, C:0.08, G:0.02, T:0.88
Consensus pattern (1 bp):
T
Found at i:45255317 original size:9 final size:9
Alignment explanation
Indices: 45255303--45255352 Score: 66
Period size: 9 Copynumber: 5.6 Consensus size: 9
45255293 GGCCTCTCCA
45255303 TTTTTCTTT
1 TTTTTCTTT
45255312 TTTTTCTTT
1 TTTTTCTTT
* *
45255321 TTATTGTTT
1 TTTTTCTTT
45255330 TTTTTCTTT
1 TTTTTCTTT
45255339 TTTCTT-TTT
1 TTT-TTCTTT
45255348 TTTTT
1 TTTTT
45255353 TTGAAATAGA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
8 2 0.06
9 32 0.89
10 2 0.06
ACGTcount: A:0.02, C:0.08, G:0.02, T:0.88
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:45256460 original size:7 final size:7
Alignment explanation
Indices: 45256428--45256459 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
45256418 AATCTTCTTC
45256428 TTTTTCT
1 TTTTTCT
45256435 TTTTTCT
1 TTTTTCT
45256442 TTTTTCT
1 TTTTTCT
45256449 TTTTT-T
1 TTTTTCT
45256455 TTTTT
1 TTTTT
45256460 TGAAATTGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (7 bp):
TTTTTCT
Found at i:45260633 original size:22 final size:21
Alignment explanation
Indices: 45260603--45260668 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
45260593 TACAAATTAA
45260603 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
45260625 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
45260646 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
45260665 ATCT
1 ATCT
45260669 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:45260655 original size:19 final size:19
Alignment explanation
Indices: 45260620--45260717 Score: 164
Period size: 19 Copynumber: 5.2 Consensus size: 19
45260610 AGATTACAAG
45260620 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
45260641 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
45260660 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
45260677 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
45260696 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
45260715 ATC
1 ATC
45260718 CTTAAAGATT
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.23
19 49 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:45260684 original size:36 final size:37
Alignment explanation
Indices: 45260620--45260717 Score: 153
Period size: 36 Copynumber: 2.6 Consensus size: 37
45260610 AGATTACAAG
45260620 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
45260660 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
45260696 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
45260718 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
36 36 0.64
38 11 0.20
39 1 0.02
40 8 0.14
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:45263520 original size:44 final size:44
Alignment explanation
Indices: 45263446--45263933 Score: 627
Period size: 44 Copynumber: 11.1 Consensus size: 44
45263436 TCACCGAAAG
*
45263446 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAAATCGAAGATAA
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAA
* * *
45263490 CAGGTTTGGCGTCTCTGTATTGTTAAAGAGCAGATCGAAGATAA
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAA
* * * *
45263534 CAGGTTTGGCGACTCTATATTGTCAGAGAGCAGATTGAAGATAA
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAA
* *
45263578 CAGGTTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAA
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAA
* * * *
45263622 CAGGTTTGGCGTCTCTATATTGACAGAGAGCAGATCGAACATAA
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAA
* * * * * *
45263666 CAGATTTGGCATCTCTGCATT-ACTGAGAGCAAATCGAAGATGA
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAA
* * *
45263709 CAGATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGATGA
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAA
* * * *
45263753 TAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAAATGA
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAA
* * * *
45263797 CAGATTTGGCATCTCTGTATTGTCAGAGAGCAGCTAGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAA
* * * *
45263841 CAGATTTGGCATCTCTGTATTGTCAGAGAGCAGCTAGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAA
* * *
45263885 CAGATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAA
45263929 CAGAT
1 CAGAT
45263934 CTGACATTTG
Statistics
Matches: 401, Mismatches: 42, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
43 38 0.09
44 363 0.91
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (44 bp):
CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAA
Found at i:45263913 original size:263 final size:263
Alignment explanation
Indices: 45263446--45263933 Score: 717
Period size: 263 Copynumber: 1.9 Consensus size: 263
45263436 TCACCGAAAG
* * *
45263446 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAAATCGAAGATAACAGGTTTGGCGTCTCTGTATT
1 CAGATTTGGCATCTCTGTATTGACAGAGAGCAAATCGAAGATAACAGATTTGGCGTCTCTGTATT
** * * *
45263511 GTTAAAGAGCAGATCGAAGATAACAGGTTTGGCGACTCTATATTGTCAGAGAGCAGATTGAAGAT
66 GACAAAGAGCAGATCGAAAATAACAGATTTGGCGACTCTATATTGTCAGAGAGCAGATAGAAGAT
* ** * * *
45263576 AACAGGTTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAGGTTTGGCGTCTCTATA
131 AACAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATAGAAGATAACAGATTTGGCATCTCTATA
45263641 TTGACAGAGAGCAGATCGAACATAACAGATTTGGCATCTCTGCATTACTGAGAGCAAATCGAAGA
196 TTGACAGAGAGCAGATCGAACATAACAGATTTGGCATCTCTGCATTACTGAGAGCAAATCGAAGA
45263706 TGA
261 TGA
* * *
45263709 CAGATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGATGATAGATTTGGCGTCTCTGTATT
1 CAGATTTGGCATCTCTGTATTGACAGAGAGCAAATCGAAGATAACAGATTTGGCGTCTCTGTATT
* * * *
45263774 GACAGAGAGCAGATCGAAAATGACAGATTTGGC-ATCTCTGTATTGTCAGAGAGCAGCTAGAAGA
66 GACAAAGAGCAGATCGAAAATAACAGATTTGGCGA-CTCTATATTGTCAGAGAGCAGATAGAAGA
* * * *
45263838 TAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGCTAGAAGATAGCAGATTTGGCATCTCTGT
130 TAACAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATAGAAGATAACAGATTTGGCATCTCTAT
* *
45263903 ATTGACAGAGAGCAGATCGAAGATAGCAGAT
195 ATTGACAGAGAGCAGATCGAACATAACAGAT
45263934 CTGACATTTG
Statistics
Matches: 197, Mismatches: 27, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
262 1 0.01
263 196 0.99
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (263 bp):
CAGATTTGGCATCTCTGTATTGACAGAGAGCAAATCGAAGATAACAGATTTGGCGTCTCTGTATT
GACAAAGAGCAGATCGAAAATAACAGATTTGGCGACTCTATATTGTCAGAGAGCAGATAGAAGAT
AACAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATAGAAGATAACAGATTTGGCATCTCTATA
TTGACAGAGAGCAGATCGAACATAACAGATTTGGCATCTCTGCATTACTGAGAGCAAATCGAAGA
TGA
Found at i:45265556 original size:12 final size:12
Alignment explanation
Indices: 45265532--45265556 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45265522 ATTATACACC
45265532 ATTATATATTAT
1 ATTATATATTAT
45265544 ATTATATATTAT
1 ATTATATATTAT
45265556 A
1 A
45265557 CATTTTTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
ATTATATATTAT
Found at i:45265579 original size:29 final size:28
Alignment explanation
Indices: 45265502--45265573 Score: 99
Period size: 29 Copynumber: 2.5 Consensus size: 28
45265492 TATTATTTTT
45265502 CTTTATATATTATTTATATTATTATACAC
1 CTTTATATATTATTTATA-TATTATACAC
* *
45265531 CATTATATATTATATTATATATTATACAT
1 CTTTATATATTAT-TTATATATTATACAC
*
45265560 TTTTATATATTATT
1 CTTTATATATTATT
45265574 CCATATGTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
28 1 0.03
29 32 0.84
30 5 0.13
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (28 bp):
CTTTATATATTATTTATATATTATACAC
Found at i:45265606 original size:26 final size:26
Alignment explanation
Indices: 45265577--45265627 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
45265567 TATTATTCCA
*
45265577 TATGTTAT-TTTTATTTTATCATAAAT
1 TATGTTATATTTTATTAT-TCATAAAT
*
45265603 TATGTTTTATTTTATTATTCATAAA
1 TATGTTATATTTTATTATTCATAAA
45265628 CTAGGTAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (26 bp):
TATGTTATATTTTATTATTCATAAAT
Found at i:45268395 original size:12 final size:13
Alignment explanation
Indices: 45268350--45268400 Score: 52
Period size: 13 Copynumber: 4.0 Consensus size: 13
45268340 CCTCCTTTCT
*
45268350 TTTCTCTTTTCTTA
1 TTTCT-TTTTCTTC
* *
45268364 TTTC-TCTTATTC
1 TTTCTTTTTCTTC
45268376 -TTCTTTTTCTTC
1 TTTCTTTTTCTTC
45268388 TTTCTTTTTCTTC
1 TTTCTTTTTCTTC
45268401 CCTTGTGTGT
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
11 3 0.10
12 11 0.37
13 12 0.40
14 4 0.13
ACGTcount: A:0.04, C:0.24, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTCTTTTTCTTC
Found at i:45269034 original size:50 final size:50
Alignment explanation
Indices: 45268954--45269055 Score: 159
Period size: 50 Copynumber: 2.0 Consensus size: 50
45268944 AGGCTAAAGG
* * * *
45268954 CACGGGCGTATGTCTAGGCTGTGTAACTCACTGTTTTGGATTTAAGGTCA
1 CACGAGCGTATGTCCAAGCCGTGTAACTCACTGTTTTGGATTTAAGGTCA
*
45269004 CACGAGCGTATGTCCAAGCCGTGTAACTCACTGTTTTGGATTTAGGGTCA
1 CACGAGCGTATGTCCAAGCCGTGTAACTCACTGTTTTGGATTTAAGGTCA
45269054 CA
1 CA
45269056 TGGCCAGGAA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (50 bp):
CACGAGCGTATGTCCAAGCCGTGTAACTCACTGTTTTGGATTTAAGGTCA
Found at i:45275174 original size:48 final size:50
Alignment explanation
Indices: 45275121--45275218 Score: 173
Period size: 49 Copynumber: 2.0 Consensus size: 50
45275111 ATATAAGAAA
*
45275121 TAAAACATGACAA-TTTTTAAATAAGAAAAA-TATACGTAAAACACAATG
1 TAAAACATGACAATTTTTTAAATAAGAAAAACTATACATAAAACACAATG
45275169 TAAAACATGACAATTTTTTAAATAAGAAAAACTATACATAAAACACAATG
1 TAAAACATGACAATTTTTTAAATAAGAAAAACTATACATAAAACACAATG
45275219 CATATTTAAG
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
48 13 0.28
49 17 0.36
50 17 0.36
ACGTcount: A:0.56, C:0.11, G:0.07, T:0.26
Consensus pattern (50 bp):
TAAAACATGACAATTTTTTAAATAAGAAAAACTATACATAAAACACAATG
Found at i:45275562 original size:15 final size:15
Alignment explanation
Indices: 45275507--45275563 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 15
45275497 AAAAAATGTG
*
45275507 ATATAATATATAA-T
1 ATATAAAATATAATT
*
45275521 A-AAAAAATAT-ATT
1 ATATAAAATATAATT
45275534 -TATAAGAATAATAATT
1 ATATAA-AAT-ATAATT
45275550 ATATAAAATATAAT
1 ATATAAAATATAAT
45275564 GGTTTAGAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 11
0.71 0.06 0.23
Matches are distributed among these distances:
12 1 0.03
13 11 0.32
14 4 0.12
15 7 0.21
16 6 0.18
17 5 0.15
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (15 bp):
ATATAAAATATAATT
Found at i:45275898 original size:7 final size:7
Alignment explanation
Indices: 45275870--45276123 Score: 63
Period size: 7 Copynumber: 35.6 Consensus size: 7
45275860 AAAAGATGAC
45275870 ATAATAAT
1 ATAAT-AT
45275878 ATAA-A-
1 ATAATAT
45275883 ATAAT-T
1 ATAATAT
45275889 ATAATAT
1 ATAATAT
45275896 ATAATAT
1 ATAATAT
45275903 GA-AAGTAT
1 -ATAA-TAT
*
45275911 AT-ATGT
1 ATAATAT
45275917 A-AA-A-
1 ATAATAT
45275921 ATAATAT
1 ATAATAT
45275928 ATAATAT
1 ATAATAT
*
45275935 AT-ATAA
1 ATAATAT
*
45275941 AGAATAT
1 ATAATAT
*
45275948 A-AAGAAT
1 ATAA-TAT
*
45275955 ACGTAATACA
1 A--TAATA-T
*
45275965 AGTAAAAAT
1 A-TAATA-T
45275974 ATAATA-
1 ATAATAT
45275980 ATAATAT
1 ATAATAT
45275987 ATAA-AT
1 ATAATAT
*
45275993 AATAATGT
1 -ATAATAT
*
45276001 AAAATA-
1 ATAATAT
45276007 ATAATAGTTT
1 ATAATA---T
* * *
45276017 GTAAAAA
1 ATAATAT
45276024 ATAATAT
1 ATAATAT
*
45276031 ATAATAA
1 ATAATAT
45276038 ATAATA-
1 ATAATAT
45276044 ATAATAT
1 ATAATAT
*
45276051 AAAATAGTGT
1 ATAATA---T
45276061 ATAGATAAT
1 ATA-AT-AT
45276070 ATAA-A-
1 ATAATAT
*
45276075 ATAATGT
1 ATAATAT
*
45276082 ATAATAAA
1 ATAAT-AT
45276090 ATAATTAT
1 ATAA-TAT
45276098 ATAATAT
1 ATAATAT
45276105 ATAATAT
1 ATAATAT
*
45276112 AAAGATAT
1 ATA-ATAT
45276120 ATAA
1 ATAA
45276124 ACATTATGTG
Statistics
Matches: 181, Mismatches: 31, Indels: 69
0.64 0.11 0.25
Matches are distributed among these distances:
4 1 0.01
5 10 0.06
6 37 0.20
7 79 0.44
8 29 0.16
9 12 0.07
10 10 0.06
11 2 0.01
12 1 0.01
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.33
Consensus pattern (7 bp):
ATAATAT
Found at i:45275955 original size:22 final size:21
Alignment explanation
Indices: 45275898--45275955 Score: 53
Period size: 22 Copynumber: 2.6 Consensus size: 21
45275888 TATAATATAT
* *
45275898 AATATGAAAGTATATATGTAAA
1 AATAT-AAAGAATATATATAAA
* *
45275920 AATAATATATAATATATATAAA
1 AAT-ATAAAGAATATATATAAA
45275942 GAATATAAAGAATA
1 -AATATAAAGAATA
45275956 CGTAATACAA
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
22 23 0.82
23 5 0.18
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.31
Consensus pattern (21 bp):
AATATAAAGAATATATATAAA
Found at i:45275982 original size:3 final size:3
Alignment explanation
Indices: 45275974--45276110 Score: 51
Period size: 3 Copynumber: 46.0 Consensus size: 3
45275964 AAGTAAAAAT
* * * *
45275974 ATA ATA ATA ATA TATAA ATA ATA AT- GTA A-A ATA ATA ATA GTTT GTA
1 ATA ATA ATA ATA -AT-A ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA
* *
45276020 A-A A-A ATA ATA TATA ATAA ATA ATA ATA AT- ATA A-A ATA GTGT ATA
1 ATA ATA ATA ATA -ATA AT-A ATA ATA ATA ATA ATA ATA ATA AT-A ATA
* *
45276064 GATA AT- ATA A-A ATA ATGT ATA ATA A-A ATA ATT AT- ATA ATA TATA
1 -ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA -ATA
45276108 ATA
1 ATA
45276111 TAAAGATATA
Statistics
Matches: 102, Mismatches: 14, Indels: 36
0.67 0.09 0.24
Matches are distributed among these distances:
2 19 0.19
3 62 0.61
4 20 0.20
5 1 0.01
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:45275997 original size:20 final size:20
Alignment explanation
Indices: 45275970--45276112 Score: 59
Period size: 20 Copynumber: 7.0 Consensus size: 20
45275960 ATACAAGTAA
45275970 AAAT-ATAATAATAATATAT
1 AAATAATAATAATAATATAT
45275989 AAATAATAATGTAA-AATA-AT
1 AAATAATAA--TAATAATATAT
** *
45276009 AATAGTTTGTAAAAAATAATATAT
1 AA-A--TAAT-AATAATAATATAT
45276033 -AATAAATAATAATAATATA-
1 AAAT-AATAATAATAATATAT
* *
45276052 AAATAGTGTATAGATAATATA-
1 AAATAAT-AATA-ATAATATAT
*
45276073 AAATAATGTATAATAA-A-AT
1 AAATAAT-AATAATAATATAT
*
45276092 AATTATATAATATATAATATA
1 AAATA-ATAATA-ATAATATA
45276113 AAGATATATA
Statistics
Matches: 95, Mismatches: 11, Indels: 33
0.68 0.08 0.24
Matches are distributed among these distances:
18 1 0.01
19 14 0.15
20 36 0.38
21 26 0.27
22 7 0.07
23 7 0.07
24 4 0.04
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (20 bp):
AAATAATAATAATAATATAT
Found at i:45276010 original size:30 final size:30
Alignment explanation
Indices: 45275974--45276054 Score: 90
Period size: 30 Copynumber: 2.6 Consensus size: 30
45275964 AAGTAAAAAT
* *
45275974 ATAATAATAATATATAAATAATAATGTAAA
1 ATAATAATAATATATAAAAAATAATATAAA
* * * *
45276004 ATAATAATAGTTTGTAAAAAATAATATATA
1 ATAATAATAATATATAAAAAATAATATAAA
45276034 ATAAATAATAATAATATAAAA
1 AT-AATAATAAT-ATATAAAA
45276055 TAGTGTATAG
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
30 26 0.65
31 8 0.20
32 6 0.15
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (30 bp):
ATAATAATAATATATAAAAAATAATATAAA
Found at i:45276012 original size:50 final size:51
Alignment explanation
Indices: 45275915--45276056 Score: 125
Period size: 50 Copynumber: 2.8 Consensus size: 51
45275905 AAGTATATAT
* * *
45275915 GTAAAAATAATATATAAT-ATATATAAAGAAT-ATAAAGAATACGTAATA-CAA
1 GTAAAAAT-ATA-ATAATAATATATAAATAATAATTAA-AATACATAATAGCAA
***
45275966 GTAAAAATATAATAATAATATATAAATAATAATGTAAAATA-ATAATAGTTT
1 GTAAAAATATAATAATAATATATAAATAATAAT-TAAAATACATAATAGCAA
*
45276017 GTAAAAA-ATAATATATAATAAAT-AATAATAATATAAAATA
1 GTAAAAATATAATA-ATAATATATAAATAATAAT-TAAAATA
45276057 GTGTATAGAT
Statistics
Matches: 78, Mismatches: 8, Indels: 11
0.80 0.08 0.11
Matches are distributed among these distances:
49 5 0.06
50 42 0.54
51 29 0.37
52 2 0.03
ACGTcount: A:0.62, C:0.01, G:0.06, T:0.31
Consensus pattern (51 bp):
GTAAAAATATAATAATAATATATAAATAATAATTAAAATACATAATAGCAA
Found at i:45276070 original size:21 final size:20
Alignment explanation
Indices: 45276023--45276093 Score: 81
Period size: 20 Copynumber: 3.5 Consensus size: 20
45276013 GTTTGTAAAA
* *
45276023 AATAATATATAATAAAT-AAT
1 AATAATATAAAAT-AATGTAT
*
45276043 AATAATATAAAATAGTGTAT
1 AATAATATAAAATAATGTAT
45276063 AGATAATATAAAATAATGTAT
1 A-ATAATATAAAATAATGTAT
*
45276084 AATAAAATAA
1 AATAATATAA
45276094 TTATATAATA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
19 2 0.05
20 23 0.52
21 19 0.43
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (20 bp):
AATAATATAAAATAATGTAT
Found at i:45276087 original size:10 final size:10
Alignment explanation
Indices: 45276023--45276110 Score: 70
Period size: 10 Copynumber: 8.4 Consensus size: 10
45276013 GTTTGTAAAA
45276023 AATAATATAT
1 AATAATATAT
45276033 AATAA-ATAAT
1 AATAATAT-AT
*
45276043 AATAATATAA
1 AATAATATAT
* *
45276053 AATAGTGTAT
1 AATAATATAT
*
45276063 AGATAATATAA
1 A-ATAATATAT
*
45276074 AATAATGTAT
1 AATAATATAT
*
45276084 AATAAAATAATT
1 AATAATAT-A-T
45276096 ATATAATATAT
1 A-ATAATATAT
45276107 AATA
1 AATA
45276111 TAAAGATATA
Statistics
Matches: 60, Mismatches: 12, Indels: 12
0.71 0.14 0.14
Matches are distributed among these distances:
9 2 0.03
10 37 0.62
11 12 0.20
12 3 0.05
13 6 0.10
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (10 bp):
AATAATATAT
Found at i:45276118 original size:51 final size:51
Alignment explanation
Indices: 45276021--45276172 Score: 131
Period size: 51 Copynumber: 3.0 Consensus size: 51
45276011 TAGTTTGTAA
* *
45276021 AAAATAATATATAAT-AAATAA-TA-ATAATATAAAATAGTGTATAGATAATAT
1 AAAATAATGTATAATAAAATAATTATATAATATAAAATA--GTAAAGAT-ATAT
*
45276072 AAAATAATGTATAATAAAATAATTATATAATATATAATA-TAAAGATATAT
1 AAAATAATGTATAATAAAATAATTATATAATATAAAATAGTAAAGATATAT
* * *
45276122 AAACATTATGTGAT-A-AAAATATATTATAATAA-ATAATA-AGTAATGATATAT
1 AAA-ATAATGT-ATAATAAAATA-ATTAT-ATAATATAAAATAGTAAAGATATAT
45276173 GTTAATTAAT
Statistics
Matches: 86, Mismatches: 7, Indels: 16
0.79 0.06 0.15
Matches are distributed among these distances:
50 14 0.16
51 46 0.53
52 12 0.14
53 2 0.02
54 12 0.14
ACGTcount: A:0.59, C:0.01, G:0.06, T:0.35
Consensus pattern (51 bp):
AAAATAATGTATAATAAAATAATTATATAATATAAAATAGTAAAGATATAT
Found at i:45278188 original size:205 final size:205
Alignment explanation
Indices: 45277836--45278418 Score: 916
Period size: 205 Copynumber: 2.8 Consensus size: 205
45277826 AATCTGCTTC
* *
45277836 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACACA
1 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACG
* * *
45277901 TGAAAGCC-AATACAACAATGTCTTCGATTCGCTCCTTGTAAGCACAAGGATGCCAAATTATCTT
66 TGAAAGCCAAAT-CAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
* * *
45277965 GGATCTTCTTCAGTATAAACATCTAAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGCGG
130 GGATCTCCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTCGAAGCGG
45278030 AGATGCCAGAT
195 AGATGCCAGAT
* * *
45278041 TTCGATTTGTTCTCTAACAATATAGAGATGCCAAATTATCTTAGATTTGCTTCATCGTAAACACG
1 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACG
* * *
45278106 TGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGCAAGCACAAGAATGCCAAATCATCTTA
66 TGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTG
* *
45278171 GATCTCCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGTTCCCCGTCGAAGTGGA
131 GATCTCCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTCGAAGCGGA
45278236 GATGCCAGAT
196 GATGCCAGAT
* * * *
45278246 TTTGATTCGTTCTCTGACAATACAGAGATGCCACATCATCTTAGATTTGCTTCATTGTAAACACG
1 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACG
* *
45278311 TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTG
66 TGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTG
* **
45278376 GATCTAGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATG
131 GATCT-CCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATG
45278419 CTGCGGCCTA
Statistics
Matches: 345, Mismatches: 31, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
205 308 0.89
206 37 0.11
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (205 bp):
TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACG
TGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTG
GATCTCCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTCGAAGCGGA
GATGCCAGAT
Found at i:45299470 original size:26 final size:26
Alignment explanation
Indices: 45299440--45299497 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
45299430 ATTTACATTC
** * *
45299440 AATGTAATTCATTATTTTTGTTAAAT
1 AATGTAATGAATTATTCTTGTTAAAG
45299466 AATGTAATGAATTATTCTTGTTAAAG
1 AATGTAATGAATTATTCTTGTTAAAG
45299492 AATGTA
1 AATGTA
45299498 TTTGTATTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (26 bp):
AATGTAATGAATTATTCTTGTTAAAG
Found at i:45303756 original size:21 final size:20
Alignment explanation
Indices: 45303731--45303769 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
45303721 ATTATCAATA
45303731 ATTATTTAAAGTTTAAATTAT
1 ATTA-TTAAAGTTTAAATTAT
*
45303752 ATTATTACAGTTTAAATT
1 ATTATTAAAGTTTAAATT
45303770 TTAAATATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (20 bp):
ATTATTAAAGTTTAAATTAT
Found at i:45304931 original size:14 final size:14
Alignment explanation
Indices: 45304909--45304946 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
45304899 AGTAAGTAAA
45304909 AAAAT-TTTAAAGT
1 AAAATATTTAAAGT
*
45304922 AAAATATTTAAATT
1 AAAATATTTAAAGT
*
45304936 AATATATTTAA
1 AAAATATTTAA
45304947 TTTTTATGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 5 0.23
14 17 0.77
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (14 bp):
AAAATATTTAAAGT
Found at i:45305137 original size:14 final size:14
Alignment explanation
Indices: 45305118--45305148 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
45305108 TAAAATTAAA
45305118 AAAAAAAGAAAAAG
1 AAAAAAAGAAAAAG
*
45305132 AAAAAAAGAAGAAG
1 AAAAAAAGAAAAAG
45305146 AAA
1 AAA
45305149 CAGACCACCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (14 bp):
AAAAAAAGAAAAAG
Found at i:45305760 original size:11 final size:11
Alignment explanation
Indices: 45305744--45305768 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
45305734 TGCAGAAGAA
45305744 ATAAAATATTT
1 ATAAAATATTT
45305755 ATAAAATATTT
1 ATAAAATATTT
45305766 ATA
1 ATA
45305769 GGGTAATGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
ATAAAATATTT
Done.