Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 137 of 235
Found at i:46354413 original size:64 final size:64
Alignment explanation
Indices: 46354312--46354440 Score: 249
Period size: 64 Copynumber: 2.0 Consensus size: 64
46354302 ACGCCAAACC
46354312 ATCTTGAGTCAGTTTGAGAACATCCGAGAGTCTAATCTGCTATGTCCTCGATTTGTTCCTTGTA
1 ATCTTGAGTCAGTTTGAGAACATCCGAGAGTCTAATCTGCTATGTCCTCGATTTGTTCCTTGTA
*
46354376 ATCTTGAGTCTGTTTGAGAACATCCGAGAGTCTAATCTGCTATGTCCTCGATTTGTTCCTTGTA
1 ATCTTGAGTCAGTTTGAGAACATCCGAGAGTCTAATCTGCTATGTCCTCGATTTGTTCCTTGTA
46354440 A
1 A
46354441 GCACAAGGAT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 64 1.00
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (64 bp):
ATCTTGAGTCAGTTTGAGAACATCCGAGAGTCTAATCTGCTATGTCCTCGATTTGTTCCTTGTA
Found at i:46354545 original size:44 final size:44
Alignment explanation
Indices: 46354497--46354676 Score: 213
Period size: 44 Copynumber: 4.1 Consensus size: 44
46354487 TGAAGGTTAG
*
46354497 ATCTGTTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAA
*
46354541 ATCTGCTATCTTCAA-CTCGTTCCCTATGAACACAGGGATGCC--
1 ATCTGCTATCTTCAATCT-GTTCCCTATAAACACAGGGATGCCAA
** * * * * * *
46354583 ATGCTGAAATCTTCAATCTGCTTCGCTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCAATCTG-TTCCCTATAAACACAGGGATGCCAA
*
46354629 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAA
46354673 ATCT
1 ATCT
46354677 TGTTTCTTTT
Statistics
Matches: 111, Mismatches: 19, Indels: 12
0.78 0.13 0.08
Matches are distributed among these distances:
42 2 0.02
43 14 0.13
44 79 0.71
45 14 0.13
46 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (44 bp):
ATCTGCTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAA
Found at i:46354638 original size:88 final size:87
Alignment explanation
Indices: 46354504--46354671 Score: 239
Period size: 88 Copynumber: 1.9 Consensus size: 87
46354494 TAGATCTGTT
*
46354504 ATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAA-CTCGTTCCCTAT
1 ATCTTCAATCTGTTCCCTATAAACACAGGAATGCCAAATCTGCTATCTTCAATCT-GTTCCCTAT
*
46354568 GAACACAGGGATGCCATGCTGAA
65 AAACACAGGGATGCCATGCTGAA
* * * * * *
46354591 ATCTTCAATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTCAATCTG-TTCCCTATAAACACAGGAATGCCAAATCTGCTATCTTCAATCTGTTCCCTAT
46354656 AAACACAGGGATGCCA
65 AAACACAGGGATGCCA
46354672 AATCTTGTTT
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
87 12 0.17
88 57 0.80
89 2 0.03
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (87 bp):
ATCTTCAATCTGTTCCCTATAAACACAGGAATGCCAAATCTGCTATCTTCAATCTGTTCCCTATA
AACACAGGGATGCCATGCTGAA
Found at i:46355595 original size:6 final size:6
Alignment explanation
Indices: 46355584--46355679 Score: 80
Period size: 6 Copynumber: 16.8 Consensus size: 6
46355574 GGCCTCTCTA
* * *
46355584 TTTTTC TTTTTC TTTTT- TTTTCC TTTCT- TTTTTC TTTTTTA TTTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC -TTTTTC TTTTTC
* *
46355631 -CTTTC TTTTTTA TTTTTC -TTTTC -TTTTC TTTTTC -TTTTC TTTTT-
1 TTTTTC -TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
46355675 TTTTT
1 TTTTT
46355680 GAAATAGAAG
Statistics
Matches: 73, Mismatches: 10, Indels: 15
0.74 0.10 0.15
Matches are distributed among these distances:
5 32 0.44
6 33 0.45
7 8 0.11
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTC
Found at i:46355599 original size:5 final size:5
Alignment explanation
Indices: 46355585--46355677 Score: 70
Period size: 5 Copynumber: 18.8 Consensus size: 5
46355575 GCCTCTCTAT
* * *
46355585 TTTTC TTTTTC TTTTT TTTTC CTTTC TTTT- TTCTT- TTTTAT TTTTC
1 TTTTC -TTTTC TTTTC TTTTC TTTTC TTTTC TT-TTC TTTT-C TTTTC
* *
46355631 CTTTC TTTT- TTAT- TTTTC TTTTC TTTTC TTTTTC TTTTC TTTT- TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC -TTTTC TTTTC TTTTC TTTT
46355678 TTGAAATAGA
Statistics
Matches: 73, Mismatches: 9, Indels: 12
0.78 0.10 0.13
Matches are distributed among these distances:
4 14 0.19
5 45 0.62
6 14 0.19
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTC
Found at i:46355604 original size:11 final size:11
Alignment explanation
Indices: 46355584--46355679 Score: 86
Period size: 11 Copynumber: 8.4 Consensus size: 11
46355574 GGCCTCTCTA
46355584 TTTTTCTTTTTC
1 TTTTT-TTTTTC
*
46355596 TTTTTTTTTCC
1 TTTTTTTTTTC
*
46355607 TTTCTTTTTTC
1 TTTTTTTTTTC
46355618 TTTTTTATTTTTCC
1 -TTTTT-TTTTT-C
* *
46355632 TTTCTTTTTTA
1 TTTTTTTTTTC
*
46355643 TTTTTCTTTTC
1 TTTTTTTTTTC
*
46355654 TTTTCTTTTTC
1 TTTTTTTTTTC
46355665 TTTTCTTTTTT-
1 TTTT-TTTTTTC
46355676 TTTT
1 TTTT
46355680 GAAATAGAAG
Statistics
Matches: 68, Mismatches: 12, Indels: 9
0.76 0.13 0.10
Matches are distributed among these distances:
11 39 0.57
12 19 0.28
13 9 0.13
14 1 0.01
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:46361923 original size:35 final size:35
Alignment explanation
Indices: 46361865--46362006 Score: 241
Period size: 35 Copynumber: 4.0 Consensus size: 35
46361855 AATCATATCT
46361865 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
46361902 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
46361937 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
46361972 TCT-AGCATTGTATCATATCTAAGATTGCATATCAT
1 TCTAAG-ATTGTATCATATCTAAGATTGCA-ATCAT
46362007 TGAAGATTAA
Statistics
Matches: 103, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
34 2 0.02
35 86 0.83
36 5 0.05
37 10 0.10
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:46366397 original size:3 final size:3
Alignment explanation
Indices: 46366339--46366381 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
46366329 TGTTTTAAAA
46366339 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
46366382 TTGAACCGTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:46366456 original size:17 final size:16
Alignment explanation
Indices: 46366434--46366472 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
46366424 TATTAAACGG
46366434 TTTTATATATATATGTA
1 TTTTATATATAT-TGTA
* *
46366451 TTTTATATGTATTTTA
1 TTTTATATATATTGTA
46366467 TTTTAT
1 TTTTAT
46366473 TTTAAATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (16 bp):
TTTTATATATATTGTA
Found at i:46366459 original size:11 final size:11
Alignment explanation
Indices: 46366443--46366476 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
46366433 GTTTTATATA
46366443 TATATGTATTT
1 TATATGTATTT
46366454 TATATGTATTT
1 TATATGTATTT
*
46366465 TAT-TTTATTT
1 TATATGTATTT
46366475 TA
1 TA
46366477 AATATATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 8 0.36
11 14 0.64
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (11 bp):
TATATGTATTT
Found at i:46366541 original size:26 final size:26
Alignment explanation
Indices: 46366512--46366561 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
46366502 TATCTGTTAA
*
46366512 TTTAAATTGTTTTATAAATTATTTAT
1 TTTAAATTATTTTATAAATTATTTAT
* *
46366538 TTTAAGTTATTTTATACATTATTT
1 TTTAAATTATTTTATAAATTATTT
46366562 TATTGCTTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (26 bp):
TTTAAATTATTTTATAAATTATTTAT
Found at i:46370202 original size:10 final size:10
Alignment explanation
Indices: 46370187--46370225 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
46370177 TATACAAGTT
46370187 AAAAAAATCG
1 AAAAAAATCG
*
46370197 AAAAAAATTCA
1 AAAAAAA-TCG
46370208 AAAAAAATCG
1 AAAAAAATCG
46370218 AAAAAAAT
1 AAAAAAAT
46370226 GTGATTTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.74, C:0.08, G:0.05, T:0.13
Consensus pattern (10 bp):
AAAAAAATCG
Found at i:46370203 original size:11 final size:11
Alignment explanation
Indices: 46370187--46370224 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
46370177 TATACAAGTT
46370187 AAAAAAATCGA
1 AAAAAAATCGA
*
46370198 AAAAAATTC-A
1 AAAAAAATCGA
46370208 AAAAAAATCGA
1 AAAAAAATCGA
46370219 AAAAAA
1 AAAAAA
46370225 TGTGATTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 9 0.38
11 15 0.62
ACGTcount: A:0.76, C:0.08, G:0.05, T:0.11
Consensus pattern (11 bp):
AAAAAAATCGA
Found at i:46378269 original size:19 final size:19
Alignment explanation
Indices: 46378245--46378284 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
46378235 AGCTCCCATG
46378245 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
46378264 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
46378283 TA
1 TA
46378285 TCAGCTCACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:46382237 original size:19 final size:19
Alignment explanation
Indices: 46382213--46382252 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
46382203 AGCTCCCATG
46382213 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
46382232 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
46382251 TA
1 TA
46382253 TCAGCTCACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:46384451 original size:19 final size:19
Alignment explanation
Indices: 46384427--46384466 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
46384417 TTTAATTTTG
*
46384427 ATCAAGTTAATTTAAATTA
1 ATCAAGTTAATTAAAATTA
46384446 ATCAAGTTAATTAAAATTA
1 ATCAAGTTAATTAAAATTA
46384465 AT
1 AT
46384467 ATGATATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.40
Consensus pattern (19 bp):
ATCAAGTTAATTAAAATTA
Found at i:46384984 original size:68 final size:72
Alignment explanation
Indices: 46384909--46385047 Score: 180
Period size: 72 Copynumber: 2.0 Consensus size: 72
46384899 ATTTTAATAA
* *
46384909 CTTAATATTCAA-TTAACTTTAATACTTA-TCT-TA-AT-AGTATTTTATTAATTTAATATTAAA
1 CTTAATATTAAATTTAA-TTTAATACTTATTCTGTAGATAAATATTTTATTAATTTAATATTAAA
*
46384969 GTGATTAT
65 ATGATTAT
** *
46384977 CTTAATATTAAATTTAATTTAATGTTTATTTTGTAGATAAATATTTTATTAATTTAATATTAAAA
1 CTTAATATTAAATTTAATTTAATACTTATTCTGTAGATAAATATTTTATTAATTTAATATTAAAA
46385042 TGATTA
66 TGATTA
46385048 AGTTTAATCA
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
68 20 0.33
69 6 0.10
70 2 0.03
71 2 0.03
72 30 0.50
ACGTcount: A:0.40, C:0.04, G:0.05, T:0.51
Consensus pattern (72 bp):
CTTAATATTAAATTTAATTTAATACTTATTCTGTAGATAAATATTTTATTAATTTAATATTAAAA
TGATTAT
Found at i:46389700 original size:120 final size:118
Alignment explanation
Indices: 46389453--46389702 Score: 256
Period size: 120 Copynumber: 2.1 Consensus size: 118
46389443 GGCTTATTTA
* * * *
46389453 TGAAAGTAATGAATGAGAAAAAGGTTCGAAAGATTAATGAAAGATTAAAGGAACTTTTTTGTTAA
1 TGAAAGTAATGAATGAGAAAAAGGTTCAAAAGATTAATGAAAGATTAAAGGAACATATTTGCTAA
* * **
46389518 TACATTGAACCTAAAGATAGAACCAATTGGCTATTTACTTGCAGGCTTATTTC
66 TACATTGAACATAAAGATAGAACCAATTAGCTATTTACTTGCAGGCTTACCTC
* * *
46389571 TGAAGGTAATGAATGAGAAAAAAATGGTGT-AAAAGATTAGTGAAAGTTTAAAGGAA-ATATTTG
1 TGAAAGTAATGAATGAG--AAAAA-GGT-TCAAAAGATTAATGAAAGATTAAAGGAACATATTTG
* * * * * * *
46389634 CTAATACA-TGAAACATAAAGATGGAATCAGTTAG-TAATTTTCTTGTAGGCTTGCCTG
62 CTAATACATTG-AACATAAAGATAGAACCAATTAGCT-ATTTACTTGCAGGCTTACCTC
46389691 TGAAAGTAATGA
1 TGAAAGTAATGA
46389703 TTTTGGATGA
Statistics
Matches: 107, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
118 16 0.15
119 3 0.03
120 61 0.57
121 26 0.24
122 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (118 bp):
TGAAAGTAATGAATGAGAAAAAGGTTCAAAAGATTAATGAAAGATTAAAGGAACATATTTGCTAA
TACATTGAACATAAAGATAGAACCAATTAGCTATTTACTTGCAGGCTTACCTC
Found at i:46392535 original size:31 final size:31
Alignment explanation
Indices: 46392500--46392568 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
46392490 ACTTTCAAAA
46392500 GTTACATAATAGTAACTAATGTTATCAAATT
1 GTTACATAATAGTAACTAATGTTATCAAATT
* * * *
46392531 GTTACATAGTAGTCATTAATGTTATCAACTT
1 GTTACATAATAGTAACTAATGTTATCAAATT
*
46392562 GTAACAT
1 GTTACAT
46392569 TTTCATCTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.39
Consensus pattern (31 bp):
GTTACATAATAGTAACTAATGTTATCAAATT
Found at i:46393560 original size:21 final size:21
Alignment explanation
Indices: 46393535--46393580 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
46393525 TCTCTCTTTA
46393535 TTTTA-TAATAATTTTTAATTT
1 TTTTAGTAATAA-TTTTAATTT
**
46393556 TTTTAGTTTTAATTTTAATTT
1 TTTTAGTAATAATTTTAATTT
46393577 TTTT
1 TTTT
46393581 TAGATTTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (21 bp):
TTTTAGTAATAATTTTAATTT
Found at i:46393581 original size:22 final size:21
Alignment explanation
Indices: 46393547--46393588 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
46393537 TTATAATAAT
*
46393547 TTTTAATTTTTTTAGTTTTAA
1 TTTTAATTTTTTTAGATTTAA
46393568 TTTTAATTTTTTTTAGATTTA
1 TTTTAA-TTTTTTTAGATTTA
46393589 TATATATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (21 bp):
TTTTAATTTTTTTAGATTTAA
Found at i:46403034 original size:54 final size:53
Alignment explanation
Indices: 46402950--46403111 Score: 182
Period size: 54 Copynumber: 3.0 Consensus size: 53
46402940 CCATGGCAAC
* * * *
46402950 ATGTGATATGTGATTTTCATATAAGGCCATAGCTGGGTTATGGCATCGGTGTG
1 ATGTGATATGTGATTTCCGTATAAGACCATAGCTGGGATATGGCATCGGTGTG
* * * * *
46403003 ATGTGATCATGTGATTTCCGTATAAGACCATAGCTGGGCTATGTCATCAGAGAG
1 ATGTGAT-ATGTGATTTCCGTATAAGACCATAGCTGGGATATGGCATCGGTGTG
* * * *
46403057 ATATGATTATGT-ACTTCTGTATAAGACCATATCTGGGATATGGCATCGGTGTG
1 ATGTGA-TATGTGATTTCCGTATAAGACCATAGCTGGGATATGGCATCGGTGTG
46403110 AT
1 AT
46403112 ATGTGCCACT
Statistics
Matches: 90, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
53 42 0.47
54 47 0.52
55 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.34
Consensus pattern (53 bp):
ATGTGATATGTGATTTCCGTATAAGACCATAGCTGGGATATGGCATCGGTGTG
Found at i:46403133 original size:47 final size:47
Alignment explanation
Indices: 46403073--46403163 Score: 155
Period size: 47 Copynumber: 1.9 Consensus size: 47
46403063 TTATGTACTT
*
46403073 CTGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATGTGCCA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGTGATATGTGCCA
* *
46403120 CTGTATAAGACCATATTTGGGATATGGCATTAGTGTGATATGTG
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGTGATATGTG
46403164 ATCCGTGTGC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.26, C:0.13, G:0.27, T:0.33
Consensus pattern (47 bp):
CTGTATAAGACCATATCTGGGATATGGCATCAGTGTGATATGTGCCA
Found at i:46405082 original size:6 final size:6
Alignment explanation
Indices: 46405073--46405110 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
46405063 CAGCTACTGC
*
46405073 TATTGT TATTGT TATTGT TATTGT TACTGT TATTGT TA
1 TATTGT TATTGT TATTGT TATTGT TATTGT TATTGT TA
46405111 CCGTTACGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.18, C:0.03, G:0.16, T:0.63
Consensus pattern (6 bp):
TATTGT
Found at i:46405111 original size:12 final size:12
Alignment explanation
Indices: 46405076--46405116 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
46405066 CTACTGCTAT
*
46405076 TGTTATTGTTAT
1 TGTTATTGTTAC
46405088 TGTTATTGTTAC
1 TGTTATTGTTAC
46405100 TGTTATTGTTAC
1 TGTTATTGTTAC
*
46405112 CGTTA
1 TGTTA
46405117 CGGTGTATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.17, C:0.07, G:0.17, T:0.59
Consensus pattern (12 bp):
TGTTATTGTTAC
Found at i:46405116 original size:18 final size:18
Alignment explanation
Indices: 46405077--46405117 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
46405067 TACTGCTATT
* **
46405077 GTTATTGTTATTGTTATT
1 GTTACTGTTATTGTTACC
46405095 GTTACTGTTATTGTTACC
1 GTTACTGTTATTGTTACC
46405113 GTTAC
1 GTTAC
46405118 GGTGTATTCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.17, C:0.10, G:0.17, T:0.56
Consensus pattern (18 bp):
GTTACTGTTATTGTTACC
Found at i:46405248 original size:18 final size:18
Alignment explanation
Indices: 46405225--46405268 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
46405215 TAAATAAAGG
46405225 TACTGAATAATTGACTGC
1 TACTGAATAATTGACTGC
* *
46405243 TACTGAATATTTGACTGT
1 TACTGAATAATTGACTGC
46405261 TACTGAAT
1 TACTGAAT
46405269 TAATAATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.39
Consensus pattern (18 bp):
TACTGAATAATTGACTGC
Found at i:46409190 original size:23 final size:23
Alignment explanation
Indices: 46409108--46409194 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
46409098 CCTGATCAGT
*
46409108 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
46409130 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
46409150 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
46409173 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
46409195 TCGATAAAGC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.62
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:46447243 original size:28 final size:28
Alignment explanation
Indices: 46447184--46447245 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
46447174 CCTATTCATT
*
46447184 AACAGT-ACAGTCTGGGCCTAAACCCTA
1 AACAGTAACAGTCTGGGCCTAAACCCAA
* * **
46447211 TACAGTAACAGTGTGGGCCTATGCCCAA
1 AACAGTAACAGTCTGGGCCTAAACCCAA
46447239 AACAGTA
1 AACAGTA
46447246 TAATCATAAC
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
27 5 0.18
28 23 0.82
ACGTcount: A:0.34, C:0.26, G:0.21, T:0.19
Consensus pattern (28 bp):
AACAGTAACAGTCTGGGCCTAAACCCAA
Found at i:46447374 original size:20 final size:22
Alignment explanation
Indices: 46447349--46447399 Score: 70
Period size: 23 Copynumber: 2.4 Consensus size: 22
46447339 AGCCAACTCA
*
46447349 CTAATA-T-CGCAACACAACTG
1 CTAATAGTACGCAACAAAACTG
46447369 CTAATAGTAACGCAACAAAACTG
1 CTAATAGT-ACGCAACAAAACTG
46447392 CTAATAGT
1 CTAATAGT
46447400 GGTAAACATG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 6 0.22
21 1 0.04
23 20 0.74
ACGTcount: A:0.43, C:0.24, G:0.12, T:0.22
Consensus pattern (22 bp):
CTAATAGTACGCAACAAAACTG
Found at i:46447384 original size:23 final size:23
Alignment explanation
Indices: 46447356--46447399 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
46447346 TCACTAATAT
*
46447356 CGCAACACAACTGCTAATAGTAA
1 CGCAACAAAACTGCTAATAGTAA
46447379 CGCAACAAAACTGCTAATAGT
1 CGCAACAAAACTGCTAATAGT
46447400 GGTAAACATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.43, C:0.25, G:0.14, T:0.18
Consensus pattern (23 bp):
CGCAACAAAACTGCTAATAGTAA
Found at i:46450148 original size:25 final size:24
Alignment explanation
Indices: 46450060--46450202 Score: 90
Period size: 25 Copynumber: 5.8 Consensus size: 24
46450050 GGCTCTTTAT
*
46450060 GAGCTTCCCGATTAATGGCTCTCCA
1 GAGCTTCCCG-TTAATGGCTTTCCA
* * * ** **
46450085 GAGCTCCCCGATATTGGCTCACTT
1 GAGCTTCCCGTTAATGGCTTTCCA
* * *
46450109 GAAACTTTCTGTTAATGGCTTTCCA
1 G-AGCTTCCCGTTAATGGCTTTCCA
* *
46450134 GAGCTTCCCGATTAATGACTTTTCA
1 GAGCTTCCCG-TTAATGGCTTTCCA
* * *
46450159 GAGCTACCCGTTATTGGC-TTACA
1 GAGCTTCCCGTTAATGGCTTTCCA
46450182 TGAGCTTCCCGTTATATGGCT
1 -GAGCTTCCCGTTA-ATGGCT
46450203 CGAAAGAGCT
Statistics
Matches: 86, Mismatches: 27, Indels: 9
0.70 0.22 0.07
Matches are distributed among these distances:
23 4 0.05
24 34 0.40
25 48 0.56
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.34
Consensus pattern (24 bp):
GAGCTTCCCGTTAATGGCTTTCCA
Found at i:46450201 original size:74 final size:74
Alignment explanation
Indices: 46450060--46450202 Score: 180
Period size: 74 Copynumber: 1.9 Consensus size: 74
46450050 GGCTCTTTAT
* * * * *
46450060 GAGCTTCCCGATTAATGGCTCTCCAGAGCTCCCCGATATTGGCTCACTTGAAACTTTCTGTTAAT
1 GAGCTTCCCGATTAATGACTCTCCAGAGCTACCCGATATTGGCTCACATGAAACTTCCCGTTAAT
46450125 GGCTTTCCA
66 GGCTTTCCA
* * * * *
46450134 GAGCTTCCCGATTAATGACTTTTCAGAGCTACCCGTTATTGGCTTACATG-AGCTTCCCGTTATA
1 GAGCTTCCCGATTAATGACTCTCCAGAGCTACCCGATATTGGCTCACATGAAACTTCCCGTTA-A
46450198 TGGCT
65 TGGCT
46450203 CGAAAGAGCT
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
73 9 0.16
74 49 0.84
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.34
Consensus pattern (74 bp):
GAGCTTCCCGATTAATGACTCTCCAGAGCTACCCGATATTGGCTCACATGAAACTTCCCGTTAAT
GGCTTTCCA
Found at i:46450211 original size:25 final size:24
Alignment explanation
Indices: 46450158--46450219 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
46450148 ATGACTTTTC
* *
46450158 AGAGCTACCCGTTATTGGCTTACA
1 AGAGCTTCCCGTTATTGGCTGACA
*
46450182 TGAGCTTCCCGTTATATGGCTCGA-A
1 AGAGCTTCCCGTTAT-TGGCT-GACA
46450207 AGAGCTTCCCGTT
1 AGAGCTTCCCGTT
46450220 TAAATGCTCA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
24 13 0.41
25 18 0.56
26 1 0.03
ACGTcount: A:0.21, C:0.26, G:0.23, T:0.31
Consensus pattern (24 bp):
AGAGCTTCCCGTTATTGGCTGACA
Found at i:46450211 original size:74 final size:74
Alignment explanation
Indices: 46450060--46450222 Score: 175
Period size: 74 Copynumber: 2.2 Consensus size: 74
46450050 GGCTCTTTAT
* * * * *
46450060 GAGCTTCCCGATTAATGGCTCTCCAGAGCTCCCCGATATTGGCTCACTTGAAACTTTCTGTTAAT
1 GAGCTTCCCGATTAATGACTCTCCAGAGCTACCCGATATTGGCTCACATGAAACTTCCCGTTAAT
****
46450125 GGCTTTCCA
66 GGCTCGAAA
* * * * *
46450134 GAGCTTCCCGATTAATGACTTTTCAGAGCTACCCGTTATTGGCTTACATG-AGCTTCCCGTTATA
1 GAGCTTCCCGATTAATGACTCTCCAGAGCTACCCGATATTGGCTCACATGAAACTTCCCGTTA-A
46450198 TGGCTCGAAA
65 TGGCTCGAAA
*
46450208 GAGCTTCCCGTTTAA
1 GAGCTTCCCGATTAA
46450223 ATGCTCAATG
Statistics
Matches: 73, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
73 9 0.12
74 64 0.88
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.33
Consensus pattern (74 bp):
GAGCTTCCCGATTAATGACTCTCCAGAGCTACCCGATATTGGCTCACATGAAACTTCCCGTTAAT
GGCTCGAAA
Found at i:46450240 original size:25 final size:25
Alignment explanation
Indices: 46450181--46450240 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
46450171 ATTGGCTTAC
*
46450181 ATGAGCTTCCCGTTATATGGCTCGA
1 ATGAGCTTCCCGTTAAATGGCTCGA
*
46450206 AAGAGCTTCCCGTTTAAAT-GCTC-A
1 ATGAGCTTCCCG-TTAAATGGCTCGA
46450230 ATGAGCATTCC
1 ATGAGC-TTCC
46450241 TGAATACGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 6 0.20
25 19 0.63
26 5 0.17
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (25 bp):
ATGAGCTTCCCGTTAAATGGCTCGA
Found at i:46453298 original size:28 final size:28
Alignment explanation
Indices: 46453266--46453320 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
46453256 CAGTAGAAAA
*
46453266 CCCTAAACCCTTCCAAAAATTAAACTAG
1 CCCTAAACCCTTCCAAAAATAAAACTAG
46453294 CCCTAAACCCTTCCAAAAATAAAACTA
1 CCCTAAACCCTTCCAAAAATAAAACTA
46453321 ATTAGGGTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.45, C:0.33, G:0.02, T:0.20
Consensus pattern (28 bp):
CCCTAAACCCTTCCAAAAATAAAACTAG
Found at i:46457818 original size:18 final size:18
Alignment explanation
Indices: 46457795--46457837 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
46457785 ATTCAAGGTG
46457795 TAATTAATTTAAAATT-TT
1 TAATTAA-TTAAAATTATT
*
46457813 TAATTAATTAAATTTATT
1 TAATTAATTAAAATTATT
46457831 TAATTAA
1 TAATTAA
46457838 AAATTATTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TAATTAATTAAAATTATT
Found at i:46457872 original size:13 final size:13
Alignment explanation
Indices: 46457854--46457880 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
46457844 TTCTCGTCCC
46457854 AGTTGGACATTCA
1 AGTTGGACATTCA
46457867 AGTTGGACATTCA
1 AGTTGGACATTCA
46457880 A
1 A
46457881 AACCCAGTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (13 bp):
AGTTGGACATTCA
Found at i:46460187 original size:45 final size:45
Alignment explanation
Indices: 46460137--46460243 Score: 135
Period size: 45 Copynumber: 2.4 Consensus size: 45
46460127 GTAGCAGTAG
* * *
46460137 CAGTAACAGTAATAGTATTCAACACACAAAGCG-CTGAATCTGTAA
1 CAGTAACGGTAACAGTATTCAACACACAAAGCGTC-GAATCGGTAA
* * * *
46460182 CAGTAATGGTAACAATATTCGACACACAAAGTGTCGAATCGGTAA
1 CAGTAACGGTAACAGTATTCAACACACAAAGCGTCGAATCGGTAA
46460227 CAGTAACGGTAACAGTA
1 CAGTAACGGTAACAGTA
46460244 ACAGTAGTCG
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
45 51 0.98
46 1 0.02
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (45 bp):
CAGTAACGGTAACAGTATTCAACACACAAAGCGTCGAATCGGTAA
Found at i:46460238 original size:12 final size:12
Alignment explanation
Indices: 46460221--46460245 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
46460211 AGTGTCGAAT
46460221 CGGTAACAGTAA
1 CGGTAACAGTAA
46460233 CGGTAACAGTAA
1 CGGTAACAGTAA
46460245 C
1 C
46460246 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:46461325 original size:5 final size:5
Alignment explanation
Indices: 46461315--46461380 Score: 104
Period size: 5 Copynumber: 14.0 Consensus size: 5
46461305 TGTTTCTTTT
46461315 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATAT- A-ATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
46461363 ATAT- A-ATA ATATA ATATA
1 ATATA ATATA ATATA ATATA
46461381 CTTAATTATT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
3 4 0.07
4 4 0.07
5 49 0.86
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:46461335 original size:15 final size:14
Alignment explanation
Indices: 46461315--46461380 Score: 100
Period size: 13 Copynumber: 4.7 Consensus size: 14
46461305 TGTTTCTTTT
46461315 ATATAATATAATATA
1 ATATAATATAA-ATA
46461330 ATATAATATAATATA
1 ATATAATATAA-ATA
46461345 ATATAATAT-AATA
1 ATATAATATAAATA
46461358 ATATAATAT-AATA
1 ATATAATATAAATA
46461371 ATATAATATA
1 ATATAATATA
46461381 CTTAATTATT
Statistics
Matches: 50, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
13 25 0.50
14 1 0.02
15 24 0.48
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
ATATAATATAAATA
Found at i:46461878 original size:33 final size:33
Alignment explanation
Indices: 46461765--46461878 Score: 83
Period size: 33 Copynumber: 3.5 Consensus size: 33
46461755 TTCTTTGTGT
* *
46461765 CATAGTCCAACTATGGTCTTACACAG-CAT--TGC
1 CATAGCCCAACTATGGCCTT--ACAGTCATAATGC
* * * * *
46461797 CATGGCCCAACCATGGTCTTACAGTCGTAGTGC
1 CATAGCCCAACTATGGCCTTACAGTCATAATGC
* **
46461830 CATAACCCAGTTATGGCCTTATCA-TCATAATGC
1 CATAGCCCAACTATGGCCTTA-CAGTCATAATGC
46461863 CATAGCCCAACTATGG
1 CATAGCCCAACTATGG
46461879 TCTAACATAT
Statistics
Matches: 63, Mismatches: 15, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
30 4 0.06
31 2 0.03
32 17 0.27
33 38 0.60
34 2 0.03
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (33 bp):
CATAGCCCAACTATGGCCTTACAGTCATAATGC
Found at i:46462063 original size:117 final size:117
Alignment explanation
Indices: 46461857--46462089 Score: 369
Period size: 117 Copynumber: 2.0 Consensus size: 117
46461847 CTTATCATCA
*
46461857 TAATGCCATAGCCCAACTATGGTCTAACATATAAATACTGCCATGGTCCAACCATGGTCATACAT
1 TAATGCCATAGCCCAACTATAGTCTAACATATAAATACTGCCATGGTCCAACCATGGTCATACAT
* *
46461922 TCAAAGTGTCATAACCTAGTTATGGT-TATTTCCGTCAATTCATCCTTTACAT
66 TCAAAGTGCCATAACCTAGTTATGGTCT-TATCCGTCAATTCATCCTTTACAT
* *
46461974 TAATGCCATAGCCCAACTATAGTCTTACATATAAATACTGCCATGGTCCAACCATGGTCTTACAT
1 TAATGCCATAGCCCAACTATAGTCTAACATATAAATACTGCCATGGTCCAACCATGGTCATACAT
*** *
46462039 TTTTAGTGCCATAACCTAGTTATGGTCTTATCCGTCAATTCCTCCTTTACA
66 TCAAAGTGCCATAACCTAGTTATGGTCTTATCCGTCAATTCATCCTTTACA
46462090 CTGAACAATT
Statistics
Matches: 106, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
117 105 0.99
118 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.33
Consensus pattern (117 bp):
TAATGCCATAGCCCAACTATAGTCTAACATATAAATACTGCCATGGTCCAACCATGGTCATACAT
TCAAAGTGCCATAACCTAGTTATGGTCTTATCCGTCAATTCATCCTTTACAT
Found at i:46466874 original size:3 final size:3
Alignment explanation
Indices: 46466866--46466926 Score: 65
Period size: 3 Copynumber: 21.3 Consensus size: 3
46466856 GAAAAATAAA
* * *
46466866 AAG AAG AAG AAG AAG -AG GAG AAG AAG AA- AA- AAA AAG AAA AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
*
46466911 AAG AAG AAG GAG AAG A
1 AAG AAG AAG AAG AAG A
46466927 GGAATTGAGA
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
2 6 0.12
3 44 0.88
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:46468215 original size:30 final size:32
Alignment explanation
Indices: 46468147--46468215 Score: 81
Period size: 31 Copynumber: 2.2 Consensus size: 32
46468137 ACTGTTAATT
* **
46468147 AGTGACTATTTTGTCACTTTTTTATAACATTG
1 AGTGACTATTTTGTAACTTTTCGATAACATTG
*
46468179 -GTGACTATTTTGTAACTTTTCGA-AA-GTTG
1 AGTGACTATTTTGTAACTTTTCGATAACATTG
46468208 AGTGACTA
1 AGTGACTA
46468216 AAATGAAACC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 3 0.09
30 9 0.28
31 20 0.62
ACGTcount: A:0.26, C:0.12, G:0.17, T:0.45
Consensus pattern (32 bp):
AGTGACTATTTTGTAACTTTTCGATAACATTG
Found at i:46475922 original size:29 final size:29
Alignment explanation
Indices: 46475874--46475930 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 29
46475864 AAAATGGATC
46475874 AAATCAAAATTTTAGGTATAAAATTACACA
1 AAATCAAAATTTTA-GTATAAAATTACACA
*
46475904 AAATCAAAATTTTTA-TATAGAATTACA
1 AAATCAAAA-TTTTAGTATAAAATTACA
46475931 TGTTAAACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 11 0.44
30 9 0.36
31 5 0.20
ACGTcount: A:0.53, C:0.09, G:0.05, T:0.33
Consensus pattern (29 bp):
AAATCAAAATTTTAGTATAAAATTACACA
Found at i:46477259 original size:12 final size:14
Alignment explanation
Indices: 46477233--46477266 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
46477223 AAACATTGAT
46477233 AATATAAATTAAAA
1 AATATAAATTAAAA
46477247 AATA-AAATTAAAA
1 AATATAAATTAAAA
46477260 AAT-TAAA
1 AATATAAA
46477267 AGTATAACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 15 0.79
14 4 0.21
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AATATAAATTAAAA
Found at i:46478594 original size:18 final size:18
Alignment explanation
Indices: 46478571--46478613 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
46478561 ATTTAAGGTG
46478571 TAATTAATTTAAAATT-TT
1 TAATTAA-TTAAAATTATT
*
46478589 TAATTAATTAAATTTATT
1 TAATTAATTAAAATTATT
46478607 TAATTAA
1 TAATTAA
46478614 AAATCTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TAATTAATTAAAATTATT
Found at i:46483276 original size:18 final size:18
Alignment explanation
Indices: 46483255--46483319 Score: 67
Period size: 18 Copynumber: 3.4 Consensus size: 18
46483245 ATGCTGCTGC
46483255 TGATGATGACAACGATGA
1 TGATGATGACAACGATGA
*
46483273 TGATGATGACAATGATAATGA
1 TGATGATGACAACG---ATGA
* * *
46483294 AGATGATGACGACGACGA
1 TGATGATGACAACGATGA
46483312 TGATGATG
1 TGATGATG
46483320 GCAGTGAAGA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
18 23 0.61
21 15 0.39
ACGTcount: A:0.38, C:0.09, G:0.29, T:0.23
Consensus pattern (18 bp):
TGATGATGACAACGATGA
Found at i:46486847 original size:22 final size:22
Alignment explanation
Indices: 46486819--46486882 Score: 65
Period size: 26 Copynumber: 2.7 Consensus size: 22
46486809 AAAACATAAT
46486819 ATAATATTTATCATAAAGGTAA
1 ATAATATTTATCATAAAGGTAA
* * *
46486841 ATAATATTTAATTAAAACAAAGTTAA
1 ATAATATTT-A-T--CATAAAGGTAA
46486867 ATAATATTTATCATAA
1 ATAATATTTATCATAA
46486883 TATTTAAATT
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
22 12 0.36
23 1 0.03
24 2 0.06
25 1 0.03
26 17 0.52
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.38
Consensus pattern (22 bp):
ATAATATTTATCATAAAGGTAA
Found at i:46486930 original size:31 final size:31
Alignment explanation
Indices: 46486895--46486959 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
46486885 TTTAAATTAA
*
46486895 ATTTTAAAAAATAAAAAATATTTTAAGCTTT
1 ATTTTAAAAAATAAAAAATATTTAAAGCTTT
* * * *
46486926 ATTTTTAAAATTAAAGATTATTTAAAGCTTT
1 ATTTTAAAAAATAAAAAATATTTAAAGCTTT
46486957 ATT
1 ATT
46486960 ATAACAATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (31 bp):
ATTTTAAAAAATAAAAAATATTTAAAGCTTT
Found at i:46487512 original size:20 final size:20
Alignment explanation
Indices: 46487489--46487548 Score: 61
Period size: 22 Copynumber: 3.0 Consensus size: 20
46487479 AAAAAATACC
* *
46487489 AATAATATATAAACATAAAA
1 AATAATAAATAAAAATAAAA
46487509 AAT-ATAAA-AATAAATATAAA
1 AATAATAAATAA-AAATA-AAA
46487529 AATAAATAAATAAAAATAAA
1 AAT-AATAAATAAAAATAAA
46487549 TATATTAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
18 2 0.06
19 8 0.24
20 9 0.27
21 2 0.06
22 10 0.30
23 2 0.06
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (20 bp):
AATAATAAATAAAAATAAAA
Found at i:46487514 original size:17 final size:15
Alignment explanation
Indices: 46487495--46487548 Score: 62
Period size: 12 Copynumber: 3.9 Consensus size: 15
46487485 TACCAATAAT
*
46487495 ATATAAACATAAAAA
1 ATATAAAAATAAAAA
46487510 ATATAAAAAT---AA
1 ATATAAAAATAAAAA
*
46487522 ATATAAAAATAAATA
1 ATATAAAAATAAAAA
46487537 A-ATAAAAATAAA
1 ATATAAAAATAAA
46487549 TATATTAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
12 12 0.35
14 11 0.32
15 11 0.32
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (15 bp):
ATATAAAAATAAAAA
Found at i:46487525 original size:12 final size:12
Alignment explanation
Indices: 46487508--46487552 Score: 72
Period size: 12 Copynumber: 3.6 Consensus size: 12
46487498 TAAACATAAA
46487508 AAATATAAAAAT
1 AAATATAAAAAT
46487520 AAATATAAAAAT
1 AAATATAAAAAT
46487532 AAATAAATAAAAAT
1 AAAT--ATAAAAAT
46487546 AAATATA
1 AAATATA
46487553 TTAAAATCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
12 19 0.61
14 12 0.39
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
AAATATAAAAAT
Found at i:46487548 original size:26 final size:27
Alignment explanation
Indices: 46487489--46487552 Score: 94
Period size: 26 Copynumber: 2.4 Consensus size: 27
46487479 AAAAAATACC
*
46487489 AATAATATATAAACATAAAAAATATAAA
1 AATAA-ATATAAAAATAAAAAATATAAA
*
46487517 AATAAATATAAAAATAAATAA-ATAAA
1 AATAAATATAAAAATAAAAAATATAAA
46487543 AATAAATATA
1 AATAAATATA
46487553 TTAAAATCTA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
26 15 0.44
27 14 0.41
28 5 0.15
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (27 bp):
AATAAATATAAAAATAAAAAATATAAA
Found at i:46487558 original size:14 final size:14
Alignment explanation
Indices: 46487492--46487559 Score: 77
Period size: 14 Copynumber: 4.9 Consensus size: 14
46487482 AAATACCAAT
*
46487492 AATATATAAACATAA
1 AATATATAAAAAT-A
*
46487507 AAAATATAAAAAT-
1 AATATATAAAAATA
46487520 AA-ATATAAAAATA
1 AATATATAAAAATA
*
46487533 AATAAATAAAAATA
1 AATATATAAAAATA
*
46487547 AATATATTAAAAT
1 AATATATAAAAAT
46487560 CTACTGAAAG
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
12 10 0.22
13 4 0.09
14 21 0.46
15 11 0.24
ACGTcount: A:0.72, C:0.01, G:0.00, T:0.26
Consensus pattern (14 bp):
AATATATAAAAATA
Found at i:46491235 original size:5 final size:6
Alignment explanation
Indices: 46491218--46491242 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
46491208 TTTAAAAATA
46491218 TATTTT TATTTT TATTTT TATTTT T
1 TATTTT TATTTT TATTTT TATTTT T
46491243 CCGTTAACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:46491960 original size:23 final size:23
Alignment explanation
Indices: 46491931--46491974 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
46491921 TCATGTATTT
*
46491931 TTTTTTAAATTTTAAATTTTAAA
1 TTTTTTAAATTTTAAAATTTAAA
*
46491954 TTTTTTATATTTTAAAATTTA
1 TTTTTTAAATTTTAAAATTTA
46491975 GGTTGACTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (23 bp):
TTTTTTAAATTTTAAAATTTAAA
Found at i:46491974 original size:7 final size:7
Alignment explanation
Indices: 46491933--46491957 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
46491923 ATGTATTTTT
46491933 TTTTAAA
1 TTTTAAA
46491940 TTTTAAA
1 TTTTAAA
46491947 TTTTAAA
1 TTTTAAA
46491954 TTTT
1 TTTT
46491958 TTATATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (7 bp):
TTTTAAA
Found at i:46493981 original size:3 final size:3
Alignment explanation
Indices: 46493973--46494000 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
46493963 CAATTTTGTT
46493973 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
46494001 GAACGTACAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:46494951 original size:21 final size:22
Alignment explanation
Indices: 46494925--46494971 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
46494915 CTCTGCTCAA
*
46494925 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
46494946 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
46494968 ACTC
1 ACTC
46494972 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:46499411 original size:8 final size:8
Alignment explanation
Indices: 46499398--46499427 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
46499388 CAACCTGGTT
46499398 TTTTTTTC
1 TTTTTTTC
46499406 TTTTTTTC
1 TTTTTTTC
46499414 -TTTTTTC
1 TTTTTTTC
46499421 TTTTTTT
1 TTTTTTT
46499428 GTAGGCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.33
8 14 0.67
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (8 bp):
TTTTTTTC
Found at i:46499419 original size:15 final size:15
Alignment explanation
Indices: 46499399--46499427 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
46499389 AACCTGGTTT
46499399 TTTTTTCTTTTTTTC
1 TTTTTTCTTTTTTTC
46499414 TTTTTTCTTTTTTT
1 TTTTTTCTTTTTTT
46499428 GTAGGCTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (15 bp):
TTTTTTCTTTTTTTC
Found at i:46500299 original size:43 final size:42
Alignment explanation
Indices: 46500164--46500323 Score: 153
Period size: 43 Copynumber: 3.8 Consensus size: 42
46500154 GCGTTTATTT
* * *
46500164 AAAAAAACGTCGCTAAAAGCCATGACTTTTAGCAGA-GTTTGT
1 AAAAAAACGCCGCTAAAAGCCATGACTTTTAGC-GACATTTGC
* * * * * *
46500206 AAAAAAGCGCGGCTAAAAGTCATGGCTTTTAGTGGCATTTGC
1 AAAAAAACGCCGCTAAAAGCCATGACTTTTAGCGACATTTGC
*** * * *
46500248 TGGGAAAGCGCCGCTAAAAGTCATGGCTTTTAGCGACATTTGC
1 -AAAAAAACGCCGCTAAAAGCCATGACTTTTAGCGACATTTGC
46500291 AAAAAAA-GCCGCTAAAAGCCATGACTTTTAGCG
1 AAAAAAACGCCGCTAAAAGCCATGACTTTTAGCG
46500324 GCGTTTTTCC
Statistics
Matches: 95, Mismatches: 21, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
41 25 0.26
42 34 0.36
43 36 0.38
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (42 bp):
AAAAAAACGCCGCTAAAAGCCATGACTTTTAGCGACATTTGC
Found at i:46500319 original size:41 final size:41
Alignment explanation
Indices: 46500164--46500323 Score: 135
Period size: 41 Copynumber: 3.8 Consensus size: 41
46500154 GCGTTTATTT
* *
46500164 AAAAAAACGTCGCTAAAAGCCATGACTTTTAGCAGA-GTTTG-
1 AAAAAAA-GCCGCTAAAAGCCATGACTTTTAGC-GACATTTGC
* * * * *
46500205 TAAAAAAGCGCGGCTAAAAGTCATGGCTTTTAGTGGCATTTGC
1 AAAAAAAGC-C-GCTAAAAGCCATGACTTTTAGCGACATTTGC
** ** * *
46500248 TGGGAAAGCGCCGCTAAAAGTCATGGCTTTTAGCGACATTTGC
1 --AAAAAAAGCCGCTAAAAGCCATGACTTTTAGCGACATTTGC
46500291 AAAAAAAGCCGCTAAAAGCCATGACTTTTAGCG
1 AAAAAAAGCCGCTAAAAGCCATGACTTTTAGCG
46500324 GCGTTTTTCC
Statistics
Matches: 94, Mismatches: 19, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
40 1 0.01
41 35 0.37
42 23 0.24
43 29 0.31
44 1 0.01
45 5 0.05
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (41 bp):
AAAAAAAGCCGCTAAAAGCCATGACTTTTAGCGACATTTGC
Found at i:46500456 original size:31 final size:33
Alignment explanation
Indices: 46500403--46500483 Score: 94
Period size: 31 Copynumber: 2.5 Consensus size: 33
46500393 TTCATGCATT
* *
46500403 AAATCCAACCAAATACAACAAATATAGCA-T-A
1 AAATACAACCAAAAACAACAAATATAGCATTAA
* * * *
46500434 AAATGCAGCCAAAAACAGCAAATTTAGCATTAA
1 AAATACAACCAAAAACAACAAATATAGCATTAA
46500467 AAATACAACCAAAAACA
1 AAATACAACCAAAAACA
46500484 TTAATTCTAA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
31 24 0.59
32 1 0.02
33 16 0.39
ACGTcount: A:0.58, C:0.21, G:0.06, T:0.15
Consensus pattern (33 bp):
AAATACAACCAAAAACAACAAATATAGCATTAA
Found at i:46500772 original size:21 final size:21
Alignment explanation
Indices: 46500718--46500772 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
46500708 GCTGCCATTG
* *
46500718 CTGCTGCCCCTACCTTCCTCA
1 CTGCTGCCCCTGCCTCCCTCA
** *
46500739 CTGCTGCAGCTGCCTCCCTCT
1 CTGCTGCCCCTGCCTCCCTCA
*
46500760 CTGCTGCCTCTGC
1 CTGCTGCCCCTGC
46500773 TCTAAGTTGT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.05, C:0.49, G:0.16, T:0.29
Consensus pattern (21 bp):
CTGCTGCCCCTGCCTCCCTCA
Found at i:46501208 original size:13 final size:14
Alignment explanation
Indices: 46501183--46501211 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
46501173 TGATGAATTG
46501183 AATTAAACAATTAT
1 AATTAAACAATTAT
46501197 AATTAAAC-ATTAT
1 AATTAAACAATTAT
46501210 AA
1 AA
46501212 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:46505713 original size:9 final size:9
Alignment explanation
Indices: 46505699--46505752 Score: 54
Period size: 9 Copynumber: 6.0 Consensus size: 9
46505689 TATTTATGTA
46505699 TTATGTAAG
1 TTATGTAAG
*
46505708 TTATGTAAA
1 TTATGTAAG
46505717 TTATGTAAG
1 TTATGTAAG
* * **
46505726 TTGTTTATC
1 TTATGTAAG
*
46505735 TTATGTAAA
1 TTATGTAAG
46505744 TTATGTAAG
1 TTATGTAAG
46505753 ATATAATATA
Statistics
Matches: 34, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
9 34 1.00
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:46505721 original size:18 final size:18
Alignment explanation
Indices: 46505698--46505751 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 18
46505688 ATATTTATGT
46505698 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
* * *
46505716 ATTATGTAAGTTGTTTAT
1 ATTATGTAAGTTATGTAA
* *
46505734 CTTATGTAAATTATGTAA
1 ATTATGTAAGTTATGTAA
46505752 GATATAATAT
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (18 bp):
ATTATGTAAGTTATGTAA
Found at i:46507381 original size:25 final size:24
Alignment explanation
Indices: 46507319--46507385 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 24
46507309 TTCCTAATAT
46507319 TGGCTCGT-ATGAGCTTCCCGTTAA
1 TGGCTC-TCATGAGCTTCCCGTTAA
46507343 TGGCTCTC-TGGAGCTTCCCGTTACA
1 TGGCTCTCAT-GAGCTTCCCGTTA-A
46507368 TGGCT-TACATGAGCTTCC
1 TGGCTCT-CATGAGCTTCC
46507386 TATTTATATG
Statistics
Matches: 38, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
23 2 0.05
24 20 0.53
25 15 0.39
26 1 0.03
ACGTcount: A:0.15, C:0.28, G:0.24, T:0.33
Consensus pattern (24 bp):
TGGCTCTCATGAGCTTCCCGTTAA
Found at i:46522793 original size:5 final size:5
Alignment explanation
Indices: 46522779--46522820 Score: 61
Period size: 5 Copynumber: 8.8 Consensus size: 5
46522769 TATTTCCAAA
*
46522779 AAAAT AAAA- ATAA- AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
46522821 GAACATATAC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
4 6 0.18
5 28 0.82
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:46530646 original size:18 final size:19
Alignment explanation
Indices: 46530611--46530651 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
46530601 TTAAAAGAAT
46530611 AAAAAAAAGAGATCATTGA
1 AAAAAAAAGAGATCATTGA
46530630 CAAAAAAAA-AGAT-ATTGA
1 -AAAAAAAAGAGATCATTGA
46530648 AAAA
1 AAAA
46530652 CAGCTCCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 4 0.19
18 5 0.24
19 4 0.19
20 8 0.38
ACGTcount: A:0.68, C:0.05, G:0.12, T:0.15
Consensus pattern (19 bp):
AAAAAAAAGAGATCATTGA
Found at i:46539840 original size:30 final size:30
Alignment explanation
Indices: 46539806--46539866 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
46539796 TCCTTAACTC
46539806 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
46539836 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
46539866 A
1 A
46539867 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:46542502 original size:17 final size:18
Alignment explanation
Indices: 46542470--46542505 Score: 56
Period size: 17 Copynumber: 2.0 Consensus size: 18
46542460 AAAATCCTAA
46542470 CTTTTTCTCCTTTCTTTCT
1 CTTTTTCT-CTTTCTTTCT
46542489 CTTTTTCT-TTTCTTTCT
1 CTTTTTCTCTTTCTTTCT
46542506 TTCCTTCTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
19 8 0.47
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (18 bp):
CTTTTTCTCTTTCTTTCT
Found at i:46542507 original size:25 final size:25
Alignment explanation
Indices: 46542479--46542526 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
46542469 ACTTTTTCTC
* * *
46542479 CTTTCTTTCTCTTTTTCTTTTCTTT
1 CTTTCCTTCTCTGTTTCGTTTCTTT
46542504 CTTTCCTTCTCTGTTTCGTTTCT
1 CTTTCCTTCTCTGTTTCGTTTCT
46542527 GCTTTGGCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.00, C:0.27, G:0.04, T:0.69
Consensus pattern (25 bp):
CTTTCCTTCTCTGTTTCGTTTCTTT
Found at i:46542525 original size:21 final size:21
Alignment explanation
Indices: 46542479--46542526 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
46542469 ACTTTTTCTC
*
46542479 CTTTCTTTCTCTTTTTCTTTT
1 CTTTCTTTCTCTTTCTCTTTT
46542500 CTTTCTTTC-C-TTCTCTGTTT
1 CTTTCTTTCTCTTTCTCT-TTT
46542520 CGTTTCT
1 C-TTTCT
46542527 GCTTTGGCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 5 0.21
20 5 0.21
21 14 0.58
ACGTcount: A:0.00, C:0.27, G:0.04, T:0.69
Consensus pattern (21 bp):
CTTTCTTTCTCTTTCTCTTTT
Found at i:46544573 original size:6 final size:6
Alignment explanation
Indices: 46544564--46544597 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
46544554 ATAATAATAA
46544564 TATTTT TATTTT TATTTT TATTATGT TATTTT TA
1 TATTTT TATTTT TATTTT TATT-T-T TATTTT TA
46544598 ATGTAAAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 19 0.73
7 2 0.08
8 5 0.19
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (6 bp):
TATTTT
Found at i:46548653 original size:21 final size:21
Alignment explanation
Indices: 46548627--46548673 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
46548617 CTGAACTACT
*
46548627 TTCTTCTAATCGATCTGAACA
1 TTCTTCTAATCGATCCGAACA
46548648 TTCTTCTAATCGATCCGAACA
1 TTCTTCTAATCGATCCGAACA
46548669 TTCTT
1 TTCTT
46548674 GAAATTCTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.09, T:0.40
Consensus pattern (21 bp):
TTCTTCTAATCGATCCGAACA
Found at i:46556480 original size:9 final size:9
Alignment explanation
Indices: 46556463--46556496 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
46556453 GCCATATACT
46556463 GTTTCTATA
1 GTTTCTATA
*
46556472 GTTTTTATA
1 GTTTCTATA
*
46556481 ATTTCTATA
1 GTTTCTATA
46556490 GTTTCTA
1 GTTTCTA
46556497 ATAGGCATCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.24, C:0.09, G:0.09, T:0.59
Consensus pattern (9 bp):
GTTTCTATA
Found at i:46557566 original size:17 final size:16
Alignment explanation
Indices: 46557540--46557574 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
46557530 AGGATAACAA
46557540 TTTATCCAATTCATCAT
1 TTTATCCAATTCA-CAT
*
46557557 TTTATTCAATTCACAT
1 TTTATCCAATTCACAT
46557573 TT
1 TT
46557575 CATCATTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.29, C:0.20, G:0.00, T:0.51
Consensus pattern (16 bp):
TTTATCCAATTCACAT
Found at i:46559624 original size:25 final size:25
Alignment explanation
Indices: 46559579--46559652 Score: 78
Period size: 25 Copynumber: 3.0 Consensus size: 25
46559569 TACTAATCTA
* * **
46559579 AAAAATATATAATAAAT-AAAATTT
1 AAAAATATACAAAAAATAAAAATAG
46559603 AAAAATATACAAAAAATAAAAATAG
1 AAAAATATACAAAAAATAAAAATAG
* *
46559628 AGAAATTTACAAAAAATGAAAAATA
1 AAAAATATACAAAAAAT-AAAAATA
46559653 AAACAAAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
24 15 0.36
25 20 0.48
26 7 0.17
ACGTcount: A:0.70, C:0.03, G:0.04, T:0.23
Consensus pattern (25 bp):
AAAAATATACAAAAAATAAAAATAG
Found at i:46560540 original size:24 final size:23
Alignment explanation
Indices: 46560464--46560549 Score: 84
Period size: 23 Copynumber: 3.7 Consensus size: 23
46560454 AATGTTCACT
* * *
46560464 AACATGTTCATTTAAC-TTAATCG
1 AACATGTTCA-TGAACATTAAACA
* *
46560487 AACATGTTTAAGAACATTAAACA
1 AACATGTTCATGAACATTAAACA
**
46560510 AACATGTTCATGAACATATAATTA
1 AACATGTTCATGAACAT-TAAACA
46560534 AACATGTTCATGAACA
1 AACATGTTCATGAACA
46560550 ATGTTAATAA
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
22 3 0.06
23 29 0.56
24 20 0.38
ACGTcount: A:0.44, C:0.15, G:0.09, T:0.31
Consensus pattern (23 bp):
AACATGTTCATGAACATTAAACA
Found at i:46560995 original size:40 final size:40
Alignment explanation
Indices: 46560940--46561019 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
46560930 AATTCATCCA
46560940 ACATTCTATCCCTTCCTTCTACACGCTTGGATGTTTTCAC
1 ACATTCTATCCCTTCCTTCTACACGCTTGGATGTTTTCAC
46560980 ACATTCTATCCCTTCCTTCTACACGCTTGGATGTTTTCAC
1 ACATTCTATCCCTTCCTTCTACACGCTTGGATGTTTTCAC
46561020 CTTTTTATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.17, C:0.33, G:0.10, T:0.40
Consensus pattern (40 bp):
ACATTCTATCCCTTCCTTCTACACGCTTGGATGTTTTCAC
Found at i:46568569 original size:10 final size:9
Alignment explanation
Indices: 46568555--46568672 Score: 55
Period size: 9 Copynumber: 12.7 Consensus size: 9
46568545 TTTTAATTTG
46568555 TTTTTATAA
1 TTTTTATAA
*
46568564 TATTTTGTAA
1 T-TTTTATAA
46568574 TTTTTA-ATA
1 TTTTTATA-A
* *
46568583 TATTTATAG
1 TTTTTATAA
*
46568592 TTTTTAAATAG
1 TTTTT--ATAA
*
46568603 TTTTTGTAA
1 TTTTTATAA
46568612 TTTGTTAT-A
1 TTT-TTATAA
46568621 TTTTTCATAA
1 TTTTT-ATAA
*
46568631 TTCTATATAA
1 TT-TTTATAA
*
46568641 -TTTTAT-T
1 TTTTTATAA
*
46568648 TTTTTGTAA
1 TTTTTATAA
46568657 TTTTCTATAA
1 TTTT-TATAA
*
46568667 TATTTA
1 TTTTTA
46568673 AATAAATTTC
Statistics
Matches: 82, Mismatches: 15, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
8 12 0.15
9 33 0.40
10 26 0.32
11 11 0.13
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.63
Consensus pattern (9 bp):
TTTTTATAA
Found at i:46578117 original size:26 final size:26
Alignment explanation
Indices: 46578081--46578190 Score: 159
Period size: 26 Copynumber: 4.2 Consensus size: 26
46578071 CATGAAATTC
46578081 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
46578107 TTATCATGAAACATTTACCTAGCCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
46578133 TTATCATGGAACATTTACTTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
46578159 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
46578185 TTATCA
1 TTATCA
46578191 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
26 75 0.97
27 2 0.03
ACGTcount: A:0.35, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:46579317 original size:15 final size:15
Alignment explanation
Indices: 46579297--46579328 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
46579287 GTAGCTTAGG
46579297 AGTAAGATTTAGATT
1 AGTAAGATTTAGATT
46579312 AGTAAGATTTAGATT
1 AGTAAGATTTAGATT
46579327 AG
1 AG
46579329 GTTTTCTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.38
Consensus pattern (15 bp):
AGTAAGATTTAGATT
Found at i:46581588 original size:138 final size:138
Alignment explanation
Indices: 46581340--46581616 Score: 410
Period size: 138 Copynumber: 2.0 Consensus size: 138
46581330 AAAAAAAAAG
* * * *
46581340 AATTATATTCTTTTCAAAAGAATATTAATTTCCATGTCTTTTATATTTTAACCAAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATCAATTTCCATATATTTTATATTTTAACCAAAATTAATTAA
* * *
46581405 TAGAACTGTTTATATTAATAAATTCAGTAAAATATGTACAATTAATTTTTTACATGAATCAACTT
66 TAGAACTGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTACATGAATCAAATT
46581470 CATATATT
131 CATATATT
**
46581478 AATTATATTCTTTCCAAAAGAATATCAATTTCCATATATTTTATATTTTAACTGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATCAATTTCCATATATTTTATATTTTAACCAAAATTAATTAA
* * ** * **
46581543 TATAATTGTTTATATTAATAAATTTGGTAAAATATATATAATTAATATTTTGTATGAATCAAATT
66 TAGAACTGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTACATGAATCAAATT
46581608 CATATATT
131 CATATATT
46581616 A
1 A
46581617 GTTTTATCTA
Statistics
Matches: 123, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
138 123 1.00
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.45
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAAGAATATCAATTTCCATATATTTTATATTTTAACCAAAATTAATTAA
TAGAACTGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTACATGAATCAAATT
CATATATT
Found at i:46583692 original size:55 final size:55
Alignment explanation
Indices: 46583592--46583718 Score: 132
Period size: 55 Copynumber: 2.3 Consensus size: 55
46583582 GCAATCTTGC
* * * * *
46583592 CAAATTAACACGGGCGTGCAACACGCCTGTGTCTATAAGCCGTGGTAGAAATTGA
1 CAAATTAACACGGGCGTACAACACGCCCGTGCCCATAAGCCGTGGTAGAAACTGA
* * * *
46583647 GAAATTAACACGGGCGTACGACACGCCCGTGCCCACT-A-CCTGTGGTCGAAACTGT
1 CAAATTAACACGGGCGTACAACACGCCCGTGCCCA-TAAGCC-GTGGTAGAAACTGA
*
46583702 CAAAATAACACGGGCGT
1 CAAATTAACACGGGCGT
46583719 GCGCATATGT
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
54 2 0.03
55 56 0.95
56 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.25, T:0.19
Consensus pattern (55 bp):
CAAATTAACACGGGCGTACAACACGCCCGTGCCCATAAGCCGTGGTAGAAACTGA
Found at i:46584955 original size:32 final size:32
Alignment explanation
Indices: 46584914--46584982 Score: 138
Period size: 32 Copynumber: 2.2 Consensus size: 32
46584904 CTGTGAGACT
46584914 TTATTGGTTATGAGTGTGTCAACATTGAATTG
1 TTATTGGTTATGAGTGTGTCAACATTGAATTG
46584946 TTATTGGTTATGAGTGTGTCAACATTGAATTG
1 TTATTGGTTATGAGTGTGTCAACATTGAATTG
46584978 TTATT
1 TTATT
46584983 CTAGAACTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.25, C:0.06, G:0.23, T:0.46
Consensus pattern (32 bp):
TTATTGGTTATGAGTGTGTCAACATTGAATTG
Found at i:46585322 original size:4 final size:4
Alignment explanation
Indices: 46585313--46585338 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
46585303 TCTTAAAAAA
46585313 ATAC ATAC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC AT
46585339 TTTAGTAGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (4 bp):
ATAC
Found at i:46586590 original size:14 final size:14
Alignment explanation
Indices: 46586556--46586595 Score: 62
Period size: 15 Copynumber: 2.8 Consensus size: 14
46586546 CTTGTTACTA
*
46586556 TATTCTGAATTATG
1 TATTCTTAATTATG
46586570 TATTTCTTAATTATG
1 TA-TTCTTAATTATG
46586585 TATTCTTAATT
1 TATTCTTAATT
46586596 CTTGCTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 11 0.46
15 13 0.54
ACGTcount: A:0.28, C:0.07, G:0.07, T:0.57
Consensus pattern (14 bp):
TATTCTTAATTATG
Found at i:46594961 original size:64 final size:64
Alignment explanation
Indices: 46594881--46595052 Score: 195
Period size: 67 Copynumber: 2.7 Consensus size: 64
46594871 AGACATTATG
* *
46594881 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAACAGAGCTACGAGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAACAGAGCTACGAGATAA
* * * * * *
46594945 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAACAGAGCTACGAGAT
46595010 AA
63 AA
* * *
46595012 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGT
46595053 GTACAAGAGA
Statistics
Matches: 88, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
63 9 0.10
64 25 0.28
66 21 0.24
67 31 0.35
68 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAACAGAGCTACGAGATAA
Found at i:46599548 original size:22 final size:22
Alignment explanation
Indices: 46599523--46599568 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
46599513 CCAAATTGTG
*
46599523 GAAAT-GTTAGAATGGATGTTTA
1 GAAATGGTTA-AATGAATGTTTA
46599545 GAAATGGTTAAATGAATGTTTA
1 GAAATGGTTAAATGAATGTTTA
46599567 GA
1 GA
46599569 CATGCTTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.39, C:0.00, G:0.26, T:0.35
Consensus pattern (22 bp):
GAAATGGTTAAATGAATGTTTA
Found at i:46601118 original size:3 final size:3
Alignment explanation
Indices: 46601112--46601140 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
46601102 ATTATTATTA
46601112 TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
46601141 ATTAAAGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:46605920 original size:16 final size:16
Alignment explanation
Indices: 46605899--46605932 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
46605889 GAAATAAACT
* *
46605899 AAAATTAATATTTAAA
1 AAAATTAAAAATTAAA
46605915 AAAATTAAAAATTAAA
1 AAAATTAAAAATTAAA
46605931 AA
1 AA
46605933 TATAAAATGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAATTAAAAATTAAA
Found at i:46612530 original size:79 final size:80
Alignment explanation
Indices: 46612447--46612607 Score: 288
Period size: 79 Copynumber: 2.0 Consensus size: 80
46612437 TTATTCGAGT
*
46612447 ATTATAATCTAAATTTGAATTAAATATCATTATTTGTCAAATGTCTGAAAT-AAAAAATATTTTA
1 ATTATAATCTAAATTTGAATTAAATATCATTATTTGTCAAATATCTGAAATAAAAAAATATTTTA
*
46612511 AATTTAACATTTTCA
66 AATTTAACATTTCCA
*
46612526 ATTATAATCTAAATTTGAATTAAATATCATTATTTTTCAAATATCTGAAATAAAAAAATATTTTA
1 ATTATAATCTAAATTTGAATTAAATATCATTATTTGTCAAATATCTGAAATAAAAAAATATTTTA
46612591 AATTTAACATTTCCA
66 AATTTAACATTTCCA
46612606 AT
1 AT
46612608 CATATGTTGA
Statistics
Matches: 78, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
79 49 0.63
80 29 0.37
ACGTcount: A:0.45, C:0.08, G:0.04, T:0.43
Consensus pattern (80 bp):
ATTATAATCTAAATTTGAATTAAATATCATTATTTGTCAAATATCTGAAATAAAAAAATATTTTA
AATTTAACATTTCCA
Found at i:46613290 original size:20 final size:20
Alignment explanation
Indices: 46613253--46613291 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
46613243 TTTCAATATC
*
46613253 AAACACATTCATTTCAAGTT
1 AAACACATTAATTTCAAGTT
46613273 AAACA-ATTAATTTCCAAGT
1 AAACACATTAATTT-CAAGT
46613292 CTTAATTGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.44, C:0.18, G:0.05, T:0.33
Consensus pattern (20 bp):
AAACACATTAATTTCAAGTT
Found at i:46615759 original size:19 final size:20
Alignment explanation
Indices: 46615723--46615766 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
46615713 TATATATACT
* *
46615723 TTAATTAAATCTTTAATTAC
1 TTAATTAAATCCTTAATTAA
46615743 TTAATTAAA-CCTTAATTAA
1 TTAATTAAATCCTTAATTAA
46615762 TTAAT
1 TTAAT
46615767 CTTACACCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (20 bp):
TTAATTAAATCCTTAATTAA
Found at i:46616945 original size:107 final size:108
Alignment explanation
Indices: 46616632--46617008 Score: 395
Period size: 114 Copynumber: 3.4 Consensus size: 108
46616622 CACTCTAATA
* * * * * *
46616632 AAAAAAATCAAAAATTTTTGGGTGCTGGTCTTCTAATAACTGACACCAGTACAAAAAATATTA--
1 AAAAAATTCAAAATTTTTTGGGTGCTGGTCTTC---TAA-TG--GCCAGGAAAAAAAATATCAGG
* * *
46616695 GAAAAATTTTTTTTGGTGCTGGCTTTCTAATGGCCGGCACCACTGTAGGA
60 GAAAACTTTTTTTTGGTGCTGGCCTTCTAATGGCCGGCACCACTGTA-GT
* *
46616745 AAAAGAATTCAAAATTTTTTGGGTACTGGTCTTCTAATGGTCGGCACCAGTAAAAAAAATATCAG
1 AAAA-AATTCAAAATTTTTTGGGTGCTGGTCTTCTAA---T-GG--CCAGGAAAAAAAATATCAG
* *
46616810 GGAAAACTTTTTTTTGGTGCTAGCCTTCTAATGGCCGGCACCACTGTTGT
59 GGAAAACTTTTTTTTGGTGCTGGCCTTCTAATGGCCGGCACCACTGTAGT
*
46616860 AAAAAA-TCAAAATTTTTTGGGTGCTGGTCTTCTAATGG-CAGGAACAAAAATATCA-GGAAATA
1 AAAAAATTCAAAATTTTTTGGGTGCTGGTCTTCTAATGGCCAGGAAAAAAAATATCAGGGAAA-A
*
46616922 TTTTTTTTTTGGTGCTGGCCTTCTAATGGCCGGCACCACTGTAGT
65 -CTTTTTTTTGGTGCTGGCCTTCTAATGGCCGGCACCACTGTAGT
* *
46616967 AAAAAAAAATTCAAAATTTTCTGGGTGTTGGTCTTCTAATGG
1 ---AAAAAATTCAAAATTTTTTGGGTGCTGGTCTTCTAATGG
46617009 TCGGCACCAG
Statistics
Matches: 230, Mismatches: 20, Indels: 30
0.82 0.07 0.11
Matches are distributed among these distances:
105 5 0.02
106 16 0.07
107 41 0.18
109 2 0.01
110 7 0.03
111 33 0.14
113 33 0.14
114 45 0.20
115 5 0.02
116 43 0.19
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.33
Consensus pattern (108 bp):
AAAAAATTCAAAATTTTTTGGGTGCTGGTCTTCTAATGGCCAGGAAAAAAAATATCAGGGAAAAC
TTTTTTTTGGTGCTGGCCTTCTAATGGCCGGCACCACTGTAGT
Found at i:46617048 original size:111 final size:112
Alignment explanation
Indices: 46616620--46617070 Score: 480
Period size: 111 Copynumber: 4.0 Consensus size: 112
46616610 TAATGCAAGT
* * * ** * *
46616620 ACCACTCTAATAAAAAAAATCAAAAATTTTTGGGTGCTGGTCTTCTAAT-AACTGACACCAGTAC
1 ACCACTGTAGTAAAAAAAATCAAAATTTTTTGGGTGCTGGTCTTCTAATGGTCAGGCACCAGTAC
* * * *
46616684 AAAAAATATTAGAAAAATTTTTTTTGGTGCTGGCTTTCTAATGGCCGGC
66 -AAAAATATCAG-GAACTTTTTTTTGGTGCTGGCCTTCTAATGGCCGGC
* * *
46616733 ACCACTGTAGGAAAAAGAATTCAAAATTTTTTGGGTACTGGTCTTCTAATGGTC-GGCACCAGTA
1 ACCACTGTAGTAAAAA-AAATCAAAATTTTTTGGGTGCTGGTCTTCTAATGGTCAGGCACCAGT-
* *
46616797 AAAAAAATATCAGGGAAAACTTTTTTTTGGTGCTAGCCTTCTAATGGCCGGC
64 ACAAAAATATCA-GG--AACTTTTTTTTGGTGCTGGCCTTCTAATGGCCGGC
*
46616849 ACCACTGTTGT--AAAAAATCAAAATTTTTTGGGTGCTGGTCTTCTAATGG-CAGG----A--AC
1 ACCACTGTAGTAAAAAAAATCAAAATTTTTTGGGTGCTGGTCTTCTAATGGTCAGGCACCAGTAC
*
46616905 AAAAATATCAGGAAATATTTTTTTTTTGGTGCTGGCCTTCTAATGGCCGGC
66 AAAAATATCAGG--A-A-CTTTTTTTTGGTGCTGGCCTTCTAATGGCCGGC
* *
46616956 ACCACTGTAGTAAAAAAAAATTCAAAATTTTCTGGGTGTTGGTCTTCTAATGGTC-GGCACCAGT
1 ACCACTGTAGT-AAAAAAAA-TCAAAATTTTTTGGGTGCTGGTCTTCTAATGGTCAGGCACCAGT
* * *
46617020 ACAAAAATATCAGG-A-TTTTTTTTTGTGCTGTCTTTCTAATGGCCGGC
64 ACAAAAATATCAGGAACTTTTTTTTGGTGCTGGCCTTCTAATGGCCGGC
46617067 ACCA
1 ACCA
46617071 AACCTTATAT
Statistics
Matches: 290, Mismatches: 28, Indels: 42
0.81 0.08 0.12
Matches are distributed among these distances:
105 5 0.02
106 12 0.04
107 41 0.14
109 1 0.00
110 6 0.02
111 65 0.22
112 2 0.01
113 49 0.17
114 50 0.17
115 4 0.01
116 41 0.14
117 14 0.05
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.33
Consensus pattern (112 bp):
ACCACTGTAGTAAAAAAAATCAAAATTTTTTGGGTGCTGGTCTTCTAATGGTCAGGCACCAGTAC
AAAAATATCAGGAACTTTTTTTTGGTGCTGGCCTTCTAATGGCCGGC
Found at i:46617212 original size:28 final size:28
Alignment explanation
Indices: 46617181--46617268 Score: 113
Period size: 28 Copynumber: 3.0 Consensus size: 28
46617171 TCATCAAATG
* *
46617181 AGTTTTTTTTTAGTGGGTTGTATAAGTA
1 AGTTTTTTTTTAGTGGATTGTATAAGGA
*
46617209 AGTTTTTTTGTAGTGGATTGTATAAGGA
1 AGTTTTTTTTTAGTGGATTGTATAAGGA
46617237 AGTTTTTTTTTTGTAGTGGATTGTATATAGGA
1 AG--TTTTTTTT-TAGTGGATTGTATA-AGGA
46617269 GTTATTTGTG
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
28 27 0.52
30 7 0.13
31 14 0.27
32 4 0.08
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.51
Consensus pattern (28 bp):
AGTTTTTTTTTAGTGGATTGTATAAGGA
Found at i:46617249 original size:31 final size:29
Alignment explanation
Indices: 46617181--46617268 Score: 117
Period size: 31 Copynumber: 3.0 Consensus size: 29
46617171 TCATCAAATG
* *
46617181 AGTTTTTTTT-TAGTGGGTTGTATAAGTA
1 AGTTTTTTTTGTAGTGGATTGTATAAGGA
46617209 AG-TTTTTTTGTAGTGGATTGTATAAGGA
1 AGTTTTTTTTGTAGTGGATTGTATAAGGA
46617237 AGTTTTTTTTTTGTAGTGGATTGTATATAGGA
1 AG--TTTTTTTTGTAGTGGATTGTATA-AGGA
46617269 GTTATTTGTG
Statistics
Matches: 53, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
27 7 0.13
28 20 0.38
31 22 0.42
32 4 0.08
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.51
Consensus pattern (29 bp):
AGTTTTTTTTGTAGTGGATTGTATAAGGA
Found at i:46625610 original size:16 final size:16
Alignment explanation
Indices: 46625585--46625615 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
46625575 CCTTTTTTTT
*
46625585 ATTTCTTTTCAATTTA
1 ATTTCGTTTCAATTTA
46625601 ATTTCGTTTCAATTT
1 ATTTCGTTTCAATTT
46625616 TTTCAATTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.13, G:0.03, T:0.61
Consensus pattern (16 bp):
ATTTCGTTTCAATTTA
Found at i:46625628 original size:5 final size:5
Alignment explanation
Indices: 46625620--46625644 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
46625610 CAATTTTTTC
46625620 AATTT AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT AATTT AATTT
46625645 CTATTTTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:46625933 original size:5 final size:5
Alignment explanation
Indices: 46625925--46625978 Score: 63
Period size: 5 Copynumber: 10.2 Consensus size: 5
46625915 TCTTTCCCTC
* *
46625925 TAATT TAATT TCATT TCAATT TTATT TCCAATT TAATT TAATT TAATT
1 TAATT TAATT TAATT T-AATT TAATT T--AATT TAATT TAATT TAATT
46625973 TAATT T
1 TAATT T
46625979 CTATTTTTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
5 34 0.81
6 4 0.10
7 4 0.10
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.59
Consensus pattern (5 bp):
TAATT
Found at i:46625967 original size:38 final size:38
Alignment explanation
Indices: 46625925--46626003 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 38
46625915 TCTTTCCCTC
*
46625925 TAATTTAATTTCATTTC-AATTTTATTTCCAATTTAATT
1 TAATTTAATTTAATTTCTAATTTTATTTCC-ATTTAATT
* * *
46625963 TAATTTAATTTAATTTCTATTTTTATTTGCATTTCATT
1 TAATTTAATTTAATTTCTAATTTTATTTCCATTTAATT
46626001 TAA
1 TAA
46626004 ATCAAAATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
38 26 0.72
39 10 0.28
ACGTcount: A:0.30, C:0.09, G:0.01, T:0.59
Consensus pattern (38 bp):
TAATTTAATTTAATTTCTAATTTTATTTCCATTTAATT
Found at i:46626037 original size:21 final size:21
Alignment explanation
Indices: 46626011--46626054 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
46626001 TAAATCAAAA
46626011 TTTTTGAAATTAAAAATTTAT
1 TTTTTGAAATTAAAAATTTAT
** *
46626032 TTTTTGCGATTTAAAATTTAT
1 TTTTTGAAATTAAAAATTTAT
46626053 TT
1 TT
46626055 CCATTAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.57
Consensus pattern (21 bp):
TTTTTGAAATTAAAAATTTAT
Found at i:46626490 original size:5 final size:5
Alignment explanation
Indices: 46626406--46626473 Score: 100
Period size: 5 Copynumber: 13.0 Consensus size: 5
46626396 CTTTCCCTCC
*
46626406 AATTT AATTT AATTT CAATTT CATTTCT AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT -AATTT -AATT-T AATTT AATTT AATTT AATTT
46626454 AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT AATTT
46626474 CTATTTGCAT
Statistics
Matches: 59, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
5 46 0.78
6 12 0.20
7 1 0.02
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (5 bp):
AATTT
Found at i:46626513 original size:21 final size:20
Alignment explanation
Indices: 46626487--46626535 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
46626477 TTTGCATTTC
46626487 ATTTAAATTAAATTTTTTGAA
1 ATTTAAATT-AATTTTTTGAA
* *
46626508 ATTTAACATTTATTTTTTGCA
1 ATTTAA-ATTAATTTTTTGAA
46626529 ATTTAAA
1 ATTTAAA
46626536 ATTTATTTCC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.04
21 21 0.84
22 3 0.12
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.53
Consensus pattern (20 bp):
ATTTAAATTAATTTTTTGAA
Found at i:46626539 original size:21 final size:21
Alignment explanation
Indices: 46626498--46626543 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
46626488 TTTAAATTAA
*
46626498 ATTTTTTGAAATTTAACATTT
1 ATTTTTTGAAATTTAAAATTT
*
46626519 ATTTTTTGCAATTTAAAATTT
1 ATTTTTTGAAATTTAAAATTT
46626540 ATTT
1 ATTT
46626544 CCATTAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (21 bp):
ATTTTTTGAAATTTAAAATTT
Found at i:46626698 original size:32 final size:35
Alignment explanation
Indices: 46626662--46626732 Score: 94
Period size: 36 Copynumber: 2.1 Consensus size: 35
46626652 TTTCACTTAA
*
46626662 TATTTCCATT-AAATTTT-TTTCA-TTTTATTTTT
1 TATTTCCATTAAAATTTTATTTCATTTTTATTATT
*
46626694 TATTTTCATTAAAATTTTCATTTCATTTTTATTATT
1 TATTTCCATTAAAATTTT-ATTTCATTTTTATTATT
46626730 TAT
1 TAT
46626733 ATTACATTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
32 9 0.27
33 7 0.21
35 5 0.15
36 12 0.36
ACGTcount: A:0.25, C:0.08, G:0.00, T:0.66
Consensus pattern (35 bp):
TATTTCCATTAAAATTTTATTTCATTTTTATTATT
Found at i:46630050 original size:54 final size:52
Alignment explanation
Indices: 46629904--46630056 Score: 182
Period size: 52 Copynumber: 2.9 Consensus size: 52
46629894 TATCATACCG
* * * * * * *
46629904 ATGCCATATCCCAGATATGGTCGTACACGGGAGCACTTATCACTT-TTCTCCG
1 ATGCCAAAGCCCAGCTATGGTCTTATAC-GGATCACTTATCACTTGTTCTCCA
*
46629956 ATGCCAAAGCCCAGCTATGGTCTTATACGGATCACTTATCACTTGTTTTCCA
1 ATGCCAAAGCCCAGCTATGGTCTTATACGGATCACTTATCACTTGTTCTCCA
* *
46630008 ATGCCATAGCCCAGCTATGGTCTTATATGGATATCACTTATCACTTGTT
1 ATGCCAAAGCCCAGCTATGGTCTTATACGG--ATCACTTATCACTTGTT
46630057 GCCATGGTCC
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
51 15 0.17
52 56 0.64
54 17 0.19
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (52 bp):
ATGCCAAAGCCCAGCTATGGTCTTATACGGATCACTTATCACTTGTTCTCCA
Found at i:46633101 original size:58 final size:58
Alignment explanation
Indices: 46632922--46633238 Score: 247
Period size: 58 Copynumber: 5.5 Consensus size: 58
46632912 ATTTTTGTAT
* * * * *
46632922 TGGTGCCGGCCATTAGAAGGCCAACACCAAAAAAATTTTGAAATATTTTTTTACTACAG
1 TGGTGCCGGCCATTAGAAGACCAGCACCCAAAAAATTTT-AAATTTTTTTTTACTATAG
** * *** * * *
46632981 TGGTGTTGGCCATTAGAAGACCAGCA-CC-AAAATTTTTTTTTTTTTGATATTTTC-GTAC
1 TGGTGCCGGCCATTAGAAGACCAGCACCCAAAAAATTTTAAATTTTT--T-TTTACTATAG
*
46633039 TGGTGCCGGGCATTAGAAGACCAGCACCCAAAAAATTTTAAATTTTTTTTTACTATAG
1 TGGTGCCGGCCATTAGAAGACCAGCACCCAAAAAATTTTAAATTTTTTTTTACTATAG
* * * * *
46633097 TGGTGCCGGCCATTAGAAGGCCAGCA--CAAAAAA---AAAATTTCTTGATATTT-TTGTAC
1 TGGTGCCGGCCATTAGAAGACCAGCACCCAAAAAATTTTAAATTT-TT--T-TTTACTATAG
** * * *
46633153 TGGTGCTTGCCATTAGAAGACAAGCACCCAAAAAATTTTGAATTTTTTTTTACTAGAG
1 TGGTGCCGGCCATTAGAAGACCAGCACCCAAAAAATTTTAAATTTTTTTTTACTATAG
** *
46633211 TGGTGCTAGCCATTAGAAGGCCAGCACC
1 TGGTGCCGGCCATTAGAAGACCAGCACC
46633239 AATTTTTTTT
Statistics
Matches: 199, Mismatches: 43, Indels: 33
0.72 0.16 0.12
Matches are distributed among these distances:
53 6 0.03
54 2 0.01
56 37 0.19
57 18 0.09
58 88 0.44
59 28 0.14
60 15 0.08
61 5 0.03
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (58 bp):
TGGTGCCGGCCATTAGAAGACCAGCACCCAAAAAATTTTAAATTTTTTTTTACTATAG
Found at i:46633179 original size:114 final size:115
Alignment explanation
Indices: 46632797--46633237 Score: 411
Period size: 114 Copynumber: 3.9 Consensus size: 115
46632787 AGAAAAGATT
* * * *
46632797 TTTCTTGATATTTTTGTACCGGTGCCTG---TTA-AAGACTAGCACTCAAAAAA-TTTAAA-TTT
1 TTTCTTGATATTTTTGTACTGGTGCCGGCCATTAGAAGACAAGCACCCAAAAAATTTTAAATTTT
* ** * * * ****
46632856 TTTTTACAAGTGTGGT-CTTGGCTATTAGAAGACCAGCAC-CAAT--TTTT
66 TTTTTACTACAGTGGTGC-TGGCCATTAGAAGGCCAGCACAAAATAAAAAA
* * * * * *
46632903 TTTTTTGGTATTTTTGTATTGGTGCCGGCCATTAGAAGGCCAA-CACCAAAAAAATTTTGAAATA
1 TTTCTTGATATTTTTGTACTGGTGCCGGCCATTAGAA-GACAAGCACCCAAAAAATTTT-AAATT
* * ******
46632967 TTTTTTTACTACAGTGGTGTTGGCCATTAGAAGACCAGCACCAAAATTTTTTT
64 TTTTTTTACTACAGTGGTGCTGGCCATTAGAAGGCCAGCA-CAAAATAAAAAA
* * * *
46633020 TTTTTTGATATTTTCGTACTGGTGCCGGGCATTAGAAGACCAGCACCCAAAAAATTTTAAATTTT
1 TTTCTTGATATTTTTGTACTGGTGCCGGCCATTAGAAGACAAGCACCCAAAAAATTTTAAATTTT
* *
46633085 TTTTTACTATAGTGGTGCCGGCCATTAGAAGGCCAGCACAAAA-AAAAAA
66 TTTTTACTACAGTGGTGCTGGCCATTAGAAGGCCAGCACAAAATAAAAAA
** *
46633134 TTTCTTGATATTTTTGTACTGGTGCTTGCCATTAGAAGACAAGCACCCAAAAAATTTTGAATTTT
1 TTTCTTGATATTTTTGTACTGGTGCCGGCCATTAGAAGACAAGCACCCAAAAAATTTTAAATTTT
* *
46633199 TTTTTACTAGAGTGGTGCTAGCCATTAGAAGGCCAGCAC
66 TTTTTACTACAGTGGTGCTGGCCATTAGAAGGCCAGCAC
46633238 CAATTTTTTT
Statistics
Matches: 277, Mismatches: 44, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
106 23 0.08
109 3 0.01
110 11 0.04
111 6 0.02
112 3 0.01
113 34 0.12
114 95 0.34
115 8 0.03
116 43 0.16
117 51 0.18
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.36
Consensus pattern (115 bp):
TTTCTTGATATTTTTGTACTGGTGCCGGCCATTAGAAGACAAGCACCCAAAAAATTTTAAATTTT
TTTTTACTACAGTGGTGCTGGCCATTAGAAGGCCAGCACAAAATAAAAAA
Found at i:46634235 original size:29 final size:32
Alignment explanation
Indices: 46634193--46634258 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 32
46634183 TAATATAAAT
*
46634193 AAAATTACACTTTACTCCCTT-AAAATTATAA
1 AAAATTACACTTTAATCCCTTAAAAATTATAA
**
46634224 AAAATTA-A-TTTAATCTTTTAAAAATTATAA
1 AAAATTACACTTTAATCCCTTAAAAATTATAA
46634254 AAAAT
1 AAAAT
46634259 ATATACTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 8 0.26
30 16 0.52
31 7 0.23
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.38
Consensus pattern (32 bp):
AAAATTACACTTTAATCCCTTAAAAATTATAA
Found at i:46634275 original size:26 final size:30
Alignment explanation
Indices: 46634214--46634276 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
46634204 TTACTCCCTT
* *
46634214 AAAATTATAAAAAATTAATTTAATCTTTTA
1 AAAATTATAAAAAATTAATATAATCTATTA
46634244 AAAATTATAAAAAA-T-ATAT-A-CTATTA
1 AAAATTATAAAAAATTAATATAATCTATTA
46634270 AAAATTA
1 AAAATTA
46634277 AAATTTCATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 12 0.39
27 1 0.03
28 3 0.10
29 1 0.03
30 14 0.45
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (30 bp):
AAAATTATAAAAAATTAATATAATCTATTA
Found at i:46638164 original size:26 final size:26
Alignment explanation
Indices: 46638135--46638242 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
46638125 TGGTACAAAT
46638135 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
46638161 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
46638187 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
46638213 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
46638239 TGAT
1 TGAT
46638243 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Done.