genome.fa.s4.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  138  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46645633--46645667	17	2.1	17	89	10	54	11	5	5	77	1.12
46646785--46646817	14	2.4	14	94	0	57	66	0	3	30	1.06
46647833--46647904	27	2.7	27	85	8	94	20	4	36	38	1.72
46655044--46655115	10	7.2	10	73	17	51	65	1	2	30	1.15
46658012--46658070	15	3.7	15	71	24	50	30	5	0	64	1.15
46658014--46658128	24	4.9	24	74	20	93	33	6	0	59	1.24
46658021--46658080	26	2.3	26	86	11	79	31	6	0	61	1.22
46658038--46658124	46	1.9	44	81	9	104	35	8	0	56	1.29
46658075--46658196	42	3.0	41	72	20	103	37	7	0	54	1.28
46658180--46658254	14	4.9	16	69	15	61	32	8	1	58	1.35
46658167--46658254	30	3.0	29	76	12	90	34	7	1	56	1.36
46658368--46658411	22	2.0	22	83	12	56	29	6	6	56	1.51
46660824--46660874	21	2.4	21	93	0	84	23	7	41	27	1.82
46670408--46670466	15	3.7	15	71	24	50	30	5	0	64	1.15
46670410--46670524	24	4.9	24	74	20	93	33	6	0	59	1.24
46670417--46670476	26	2.3	26	86	11	79	31	6	0	61	1.22
46670434--46670520	46	1.9	44	81	9	104	35	8	0	56	1.29
46670471--46670592	42	3.0	41	72	20	103	37	7	0	54	1.28
46670576--46670650	14	4.9	16	69	15	61	32	8	1	58	1.35
46670563--46670650	30	3.0	29	76	12	90	34	7	1	56	1.36
46670764--46670807	22	2.0	22	83	12	56	29	6	6	56	1.51
46674155--46674199	20	2.2	20	100	0	90	26	15	26	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46674730--46674774	23	2.0	23	82	8	56	37	8	13	40	1.76
46676970--46677019	22	2.2	23	82	3	57	24	2	12	62	1.40
46687376--46687423	20	2.4	20	79	6	53	29	4	0	66	1.10
46687476--46687514	20	2.0	20	85	10	53	66	0	2	30	1.05
46689909--46689970	27	2.3	27	86	2	81	27	29	16	27	1.97
46691378--46691575	27	8.1	25	68	17	123	54	5	7	33	1.51
46691552--46691597	14	2.9	16	81	15	51	50	2	8	39	1.46
46691967--46692038	24	3.0	23	73	20	60	55	4	5	34	1.42
46692088--46692139	22	2.3	21	78	18	52	57	1	7	32	1.38
46692120--46692159	19	2.1	19	86	9	55	65	0	2	32	1.06
46698802--46698896	40	2.4	40	89	0	136	23	25	27	24	2.00
46707447--46707626	58	3.1	58	89	2	247	27	21	6	44	1.77
46708365--46708402	20	1.9	20	94	0	67	23	28	15	31	1.96
46711115--46711229	5	23.6	5	69	21	66	58	1	5	34	1.31
46711091--46711188	30	3.1	30	83	14	117	58	1	5	35	1.27
46711126--46711188	19	3.3	19	78	8	56	57	1	4	36	1.30
46711239--46711580	64	5.2	64	68	12	269	56	3	7	31	1.46
46711211--46711624	133	3.1	133	100	0	828	57	3	8	30	1.45
46713286--46713413	44	2.9	44	84	1	177	28	23	14	33	1.93
46713375--46713725	87	4.0	88	71	15	251	28	20	18	32	1.96
46713442--46714004	176	3.2	176	88	0	865	26	19	19	33	1.96
46713442--46714083	176	3.6	175	83	5	799	27	19	19	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46713553--46714083	87	5.9	94	70	15	323	27	19	19	33	1.96
46725367--46725426	17	3.5	17	74	21	63	65	0	1	33	1.03
46725876--46725994	19	5.7	21	74	17	68	39	15	8	36	1.78
46725876--46725976	24	4.6	22	74	14	66	39	15	7	36	1.77
46725889--46726020	19	6.6	21	81	18	117	37	15	10	36	1.82
46725889--46726026	43	3.5	38	83	14	156	37	15	10	36	1.81
46725912--46726026	19	5.9	19	84	15	164	36	14	11	37	1.82
46726144--46726186	23	1.9	22	85	4	59	13	2	13	69	1.28
46726420--46726584	87	1.9	87	81	5	199	26	21	18	33	1.96
46726340--46726822	261	1.9	256	86	3	698	26	21	18	33	1.96
46726654--46727197	205	2.7	202	92	1	894	28	22	17	31	1.97
46727085--46727377	87	3.4	85	68	18	206	29	22	17	30	1.97
46727013--46727368	174	2.0	174	91	0	577	29	22	17	30	1.97
46731113--46731200	6	14.3	6	71	17	65	48	13	17	20	1.80
46731128--46731197	25	2.8	25	81	14	83	48	14	18	18	1.81
46731122--46731200	31	2.5	31	87	0	104	49	12	17	20	1.79
46731417--46731468	27	2.0	26	84	3	68	34	21	26	17	1.95
46731379--46732224	67	12.6	67	99	0	1683	29	22	29	17	1.97
46731484--46731535	27	2.0	26	84	3	68	34	21	26	17	1.95
46731551--46731602	27	2.0	26	84	3	68	34	21	26	17	1.95
46731618--46731669	27	2.0	26	84	3	68	34	21	26	17	1.95
46731685--46731736	27	2.0	26	84	3	68	34	21	26	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46731752--46731803	27	2.0	26	84	3	68	34	21	26	17	1.95
46731819--46731870	27	2.0	26	84	3	68	34	21	26	17	1.95
46731886--46731937	27	2.0	26	84	3	68	34	21	26	17	1.95
46731953--46732004	27	2.0	26	84	3	68	34	21	26	17	1.95
46732020--46732071	27	2.0	26	84	3	68	34	21	26	17	1.95
46732087--46732138	27	2.0	26	84	3	68	34	21	26	17	1.95
46732154--46732205	27	2.0	26	84	3	68	34	21	26	17	1.95
46732449--46732565	27	4.3	27	83	4	146	24	19	18	36	1.94
46732667--46733702	163	6.4	163	91	1	1571	31	8	20	39	1.83
46732666--46733702	27	38.3	27	84	1	1142	31	8	20	39	1.83
46739011--46739262	68	3.8	65	76	10	203	30	16	28	24	1.97
46747928--46747987	27	2.3	27	85	8	79	35	20	21	23	1.96
46748026--46748077	27	2.0	26	84	3	68	34	21	26	17	1.95
46748295--46748519	27	8.3	27	86	3	276	24	20	18	35	1.95
46748295--46748517	54	4.1	54	85	2	304	25	21	18	34	1.96
46748299--46748519	81	2.7	81	90	0	336	24	21	18	35	1.95
46748501--46748658	81	2.0	81	81	0	190	31	11	22	34	1.90
46748637--46748913	109	2.6	109	89	2	407	32	7	20	39	1.81
46748553--46748897	27	12.7	27	83	1	370	31	9	20	38	1.84
46749474--46749599	35	3.5	36	87	7	184	35	15	11	38	1.82
46749474--46749599	54	2.3	54	98	0	243	35	15	11	38	1.82
46749488--46749597	17	6.5	15	85	8	78	35	15	10	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46749474--46749599	19	6.9	19	87	10	201	35	15	11	38	1.82
46749672--46749714	23	1.9	22	85	4	59	13	2	13	69	1.28
46750916--46751269	132	2.7	132	90	1	530	27	18	24	29	1.98
46757972--46758074	52	2.0	51	96	0	179	28	16	35	18	1.92
46768199--46768345	73	2.0	74	95	1	269	40	10	20	28	1.86
46768745--46769233	47	10.3	47	91	2	753	32	8	30	29	1.87
46768745--46769233	96	5.1	94	92	1	753	32	8	30	29	1.87
46768745--46769233	143	3.4	143	91	2	779	32	8	30	29	1.87
46770998--46771280	44	6.4	44	89	0	449	26	15	30	26	1.96
46773026--46773264	130	1.8	130	82	1	309	25	18	20	35	1.95
46774585--46774631	23	2.0	25	83	8	62	38	2	25	34	1.68
46775764--46775808	23	2.0	23	82	8	56	13	37	31	17	1.89
46777622--46777667	19	2.5	19	89	3	76	76	0	4	19	0.96
46777622--46777673	6	8.5	6	78	4	59	76	0	3	19	0.93
46780205--46780265	30	2.0	30	90	0	95	14	27	36	21	1.93
46783368--46783934	90	6.4	90	87	4	776	27	26	15	30	1.96
46783368--46783984	45	14.0	45	64	16	245	26	26	15	31	1.95
46796014--46796119	5	20.6	5	74	12	81	64	0	2	32	1.15
46796003--46796121	15	7.7	16	73	14	83	63	1	2	32	1.18
46796003--46796115	31	3.7	29	77	14	111	63	1	2	31	1.18
46798006--46798035	3	10.3	3	92	7	53	70	0	0	30	0.88
46798006--46798037	11	2.8	11	95	4	55	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46798006--46798039	14	2.4	14	90	9	52	73	0	0	26	0.83
46798085--46798173	18	5.1	17	70	8	54	75	0	6	17	1.02
46798110--46798151	6	7.2	6	78	5	50	78	0	2	19	0.86
46798136--46798182	24	1.9	25	86	4	69	72	0	4	23	1.02
46798184--46798211	4	7.0	4	100	0	56	50	0	0	50	1.00
46798213--46798264	22	2.5	20	85	11	77	75	1	0	23	0.91
46798314--46798415	30	3.4	30	95	0	186	16	28	37	17	1.92
46803013--46803234	45	5.0	45	78	7	213	24	17	24	33	1.96
46806108--46806184	40	1.9	40	91	0	127	46	20	9	23	1.79
46812899--46812969	35	2.0	36	88	2	108	32	0	33	33	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235