Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 138 of 235
Found at i:46645653 original size:17 final size:17
Alignment explanation
Indices: 46645633--46645667 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
46645623 TTTTTTAAAT
46645633 TTTTTCGTA-TTTTTTTA
1 TTTTT-GTACTTTTTTTA
46645650 TTTTTGTACTTTTTTTA
1 TTTTTGTACTTTTTTTA
46645667 T
1 T
46645668 CACTTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.18
17 14 0.82
ACGTcount: A:0.11, C:0.06, G:0.06, T:0.77
Consensus pattern (17 bp):
TTTTTGTACTTTTTTTA
Found at i:46646824 original size:14 final size:14
Alignment explanation
Indices: 46646785--46646817 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
46646775 AATATAAAAC
*
46646785 AAATAAATTAAATT
1 AAATAAATTAAAGT
46646799 AAATAAATTAAAGT
1 AAATAAATTAAAGT
46646813 AAATA
1 AAATA
46646818 GAATAAAACG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (14 bp):
AAATAAATTAAAGT
Found at i:46647894 original size:29 final size:27
Alignment explanation
Indices: 46647833--46647904 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
46647823 AATGCCTTAT
46647833 TGGTGTGTTTGGGAGGATATGATATAC
1 TGGTGTGTTTGGGAGGATATGATATAC
*
46647860 TGGTGTGTTTGGGAGGCTAT-ATTATAC
1 TGGTGTGTTTGGGAGGATATGA-TATAC
*
46647887 TAGTGTGTTAT-GGAGGAT
1 TGGTGTGTT-TGGGAGGAT
46647905 TTATAATATT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
26 1 0.03
27 38 0.95
28 1 0.03
ACGTcount: A:0.21, C:0.04, G:0.36, T:0.39
Consensus pattern (27 bp):
TGGTGTGTTTGGGAGGATATGATATAC
Found at i:46655063 original size:10 final size:10
Alignment explanation
Indices: 46655044--46655115 Score: 51
Period size: 10 Copynumber: 7.2 Consensus size: 10
46655034 TTCATATTTT
*
46655044 AAATTTTAAA
1 AAATTATAAA
46655054 AAATTATAAA
1 AAATTATAAA
* *
46655064 AATTTCAAAAA
1 AAATT-ATAAA
46655075 AAATTA-AAA
1 AAATTATAAA
*
46655084 ATA-TATAAA
1 AAATTATAAA
46655093 GAAAGTT-TAAA
1 -AAA-TTATAAA
*
46655104 AAATTTTAAA
1 AAATTATAAA
46655114 AA
1 AA
46655116 TTTCTAGAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
8 2 0.04
9 10 0.20
10 25 0.50
11 12 0.24
12 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (10 bp):
AAATTATAAA
Found at i:46658032 original size:15 final size:15
Alignment explanation
Indices: 46658012--46658070 Score: 50
Period size: 15 Copynumber: 3.7 Consensus size: 15
46658002 TGATTTTATG
46658012 TATTATATTTTATAT
1 TATTATATTTTATAT
46658027 TATTAT-TTACTTATAT
1 TATTATATT--TTATAT
*
46658043 T-TTATTATATTATAT
1 TATTA-TATTTTATAT
46658058 TACTTCATATTTT
1 TA-TT-ATATTTT
46658071 TATCATATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 12
0.71 0.04 0.24
Matches are distributed among these distances:
14 2 0.06
15 16 0.46
16 8 0.23
17 8 0.23
18 1 0.03
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (15 bp):
TATTATATTTTATAT
Found at i:46658044 original size:23 final size:24
Alignment explanation
Indices: 46658014--46658128 Score: 93
Period size: 24 Copynumber: 4.9 Consensus size: 24
46658004 ATTTTATGTA
46658014 TTATATTTTA-TATTATTAT-TTAC
1 TTATATTTTATTA-TATTATATTAC
46658037 TTATATTTTATTATATTATATTAC
1 TTATATTTTATTATATTATATTAC
*
46658061 TTCATATTTTTATCATATTA-A-TA-
1 TT-ATA-TTTTATTATATTATATTAC
**
46658084 -TATATTTTAACATA-TATCATTAC
1 TTATATTTTATTATATTAT-ATTAC
*
46658107 TCAT-TATTTATTATATTATATT
1 TTATAT-TTTATTATATTATATT
46658129 TTCATCACAT
Statistics
Matches: 76, Mismatches: 5, Indels: 21
0.75 0.05 0.21
Matches are distributed among these distances:
19 2 0.03
20 9 0.12
21 4 0.05
22 3 0.04
23 17 0.22
24 22 0.29
25 7 0.09
26 12 0.16
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (24 bp):
TTATATTTTATTATATTATATTAC
Found at i:46658050 original size:26 final size:26
Alignment explanation
Indices: 46658021--46658080 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
46658011 GTATTATATT
46658021 TTATATTATTATTTACTT-ATA-TTTTA
1 TTATATTA-TA-TTACTTCATATTTTTA
46658047 TTATATTATATTACTTCATATTTTTA
1 TTATATTATATTACTTCATATTTTTA
*
46658073 TCATATTA
1 TTATATTA
46658081 ATATATATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 6 0.19
25 5 0.16
26 20 0.65
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.62
Consensus pattern (26 bp):
TTATATTATATTACTTCATATTTTTA
Found at i:46658106 original size:46 final size:44
Alignment explanation
Indices: 46658038--46658124 Score: 104
Period size: 46 Copynumber: 1.9 Consensus size: 44
46658028 ATTATTTACT
** *
46658038 TATATTTTATTATATTATATTACTTCATATTTTTATCATATTAATA
1 TATATTTTAACATATTATATTAC-TCAT-TATTTATCATATTAATA
*
46658084 TATATTTTAACATA-TATCATTACTCATTATTTATTATATTA
1 TATATTTTAACATATTAT-ATTACTCATTATTTATCATATTA
46658125 TATTTTCATC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
44 12 0.33
45 7 0.19
46 17 0.47
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (44 bp):
TATATTTTAACATATTATATTACTCATTATTTATCATATTAATA
Found at i:46658187 original size:42 final size:41
Alignment explanation
Indices: 46658075--46658196 Score: 103
Period size: 42 Copynumber: 3.0 Consensus size: 41
46658065 TATTTTTATC
* * *
46658075 ATATTAATATATATTTTAAC-ATATATCA-TTACTCATTA-TT
1 ATATTATTTTATATTTTAACAATATATTATTTA-T-ATTATTT
* *
46658115 -TATTATATTATATTTTCATCACATA-A-TATTTATATATATTT
1 ATATTATTTTATATTTT-AACA-ATATATTATTTATAT-TATTT
46658156 ATATTATTTTATATTTTAACAATATATTATTTCATATTATT
1 ATATTATTTTATATTTTAACAATATATTATTT-ATATTATT
46658197 ATTATCTAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 18
0.72 0.08 0.20
Matches are distributed among these distances:
39 15 0.23
40 9 0.14
41 10 0.15
42 27 0.42
43 4 0.06
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (41 bp):
ATATTATTTTATATTTTAACAATATATTATTTATATTATTT
Found at i:46658199 original size:16 final size:16
Alignment explanation
Indices: 46658180--46658254 Score: 61
Period size: 14 Copynumber: 4.9 Consensus size: 16
46658170 TTTAACAATA
46658180 TATTATTTCATATTAT
1 TATTATTTCATATTAT
* *
46658196 TATTATCTAATA-TA-
1 TATTATTTCATATTAT
* *
46658210 TATTTTTTCATGTATAT
1 TATTATTTCATAT-TAT
*
46658227 TATTA-TTCACATTAT
1 TATTATTTCATATTAT
46658242 TA-T-TTTCATATTA
1 TATTATTTCATATTA
46658255 AATTGATATT
Statistics
Matches: 45, Mismatches: 10, Indels: 10
0.69 0.15 0.15
Matches are distributed among these distances:
14 17 0.38
15 7 0.16
16 17 0.38
17 4 0.09
ACGTcount: A:0.32, C:0.08, G:0.01, T:0.59
Consensus pattern (16 bp):
TATTATTTCATATTAT
Found at i:46658213 original size:30 final size:29
Alignment explanation
Indices: 46658167--46658254 Score: 90
Period size: 30 Copynumber: 3.0 Consensus size: 29
46658157 TATTATTTTA
46658167 TATT-TTAACAATATATTATTTCATATTAT
1 TATTATTAAC-ATATATTATTTCATATTAT
* * *
46658196 TATTATCTAATATATATTTTTTCATGTATAT
1 TATTAT-TAACATATATTATTTCATAT-TAT
*
46658227 TATTATTCACAT-TATTATTTTCATATTA
1 TATTATTAACATATATTA-TTTCATATTA
46658255 AATTGATATT
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
29 10 0.21
30 26 0.54
31 12 0.25
ACGTcount: A:0.34, C:0.08, G:0.01, T:0.57
Consensus pattern (29 bp):
TATTATTAACATATATTATTTCATATTAT
Found at i:46658402 original size:21 final size:22
Alignment explanation
Indices: 46658368--46658411 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
46658358 TATTTCAAAA
*
46658368 TTCATTATTAATT-ACTATGTT
1 TTCATTATTAATTAAATATGTT
46658389 TTCATGTATT-ATTAAATATGTT
1 TTCAT-TATTAATTAAATATGTT
46658411 T
1 T
46658412 ATTATCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (22 bp):
TTCATTATTAATTAAATATGTT
Found at i:46660850 original size:21 final size:21
Alignment explanation
Indices: 46660824--46660874 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
46660814 CCTCAAAACA
*
46660824 GTTGGAGGATCGTTGCAAGTG
1 GTTGGAGGATCATTGCAAGTG
46660845 GTTGGAGGATCATTGCAAGTG
1 GTTGGAGGATCATTGCAAGTG
*
46660866 GTTAGAGGA
1 GTTGGAGGA
46660875 GAATTTTAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.24, C:0.08, G:0.41, T:0.27
Consensus pattern (21 bp):
GTTGGAGGATCATTGCAAGTG
Found at i:46670428 original size:15 final size:15
Alignment explanation
Indices: 46670408--46670466 Score: 50
Period size: 15 Copynumber: 3.7 Consensus size: 15
46670398 TGATTTTATG
46670408 TATTATATTTTATAT
1 TATTATATTTTATAT
46670423 TATTAT-TTACTTATAT
1 TATTATATT--TTATAT
*
46670439 T-TTATTATATTATAT
1 TATTA-TATTTTATAT
46670454 TACTTCATATTTT
1 TA-TT-ATATTTT
46670467 TATCATATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 12
0.71 0.04 0.24
Matches are distributed among these distances:
14 2 0.06
15 16 0.46
16 8 0.23
17 8 0.23
18 1 0.03
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (15 bp):
TATTATATTTTATAT
Found at i:46670440 original size:23 final size:24
Alignment explanation
Indices: 46670410--46670524 Score: 93
Period size: 24 Copynumber: 4.9 Consensus size: 24
46670400 ATTTTATGTA
46670410 TTATATTTTA-TATTATTAT-TTAC
1 TTATATTTTATTA-TATTATATTAC
46670433 TTATATTTTATTATATTATATTAC
1 TTATATTTTATTATATTATATTAC
*
46670457 TTCATATTTTTATCATATTA-A-TA-
1 TT-ATA-TTTTATTATATTATATTAC
**
46670480 -TATATTTTAACATA-TATCATTAC
1 TTATATTTTATTATATTAT-ATTAC
*
46670503 TCAT-TATTTATTATATTATATT
1 TTATAT-TTTATTATATTATATT
46670525 TTCATCACAT
Statistics
Matches: 76, Mismatches: 5, Indels: 21
0.75 0.05 0.21
Matches are distributed among these distances:
19 2 0.03
20 9 0.12
21 4 0.05
22 3 0.04
23 17 0.22
24 22 0.29
25 7 0.09
26 12 0.16
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (24 bp):
TTATATTTTATTATATTATATTAC
Found at i:46670446 original size:26 final size:26
Alignment explanation
Indices: 46670417--46670476 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
46670407 GTATTATATT
46670417 TTATATTATTATTTACTT-ATA-TTTTA
1 TTATATTA-TA-TTACTTCATATTTTTA
46670443 TTATATTATATTACTTCATATTTTTA
1 TTATATTATATTACTTCATATTTTTA
*
46670469 TCATATTA
1 TTATATTA
46670477 ATATATATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 6 0.19
25 5 0.16
26 20 0.65
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.62
Consensus pattern (26 bp):
TTATATTATATTACTTCATATTTTTA
Found at i:46670502 original size:46 final size:44
Alignment explanation
Indices: 46670434--46670520 Score: 104
Period size: 46 Copynumber: 1.9 Consensus size: 44
46670424 ATTATTTACT
** *
46670434 TATATTTTATTATATTATATTACTTCATATTTTTATCATATTAATA
1 TATATTTTAACATATTATATTAC-TCAT-TATTTATCATATTAATA
*
46670480 TATATTTTAACATA-TATCATTACTCATTATTTATTATATTA
1 TATATTTTAACATATTAT-ATTACTCATTATTTATCATATTA
46670521 TATTTTCATC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
44 12 0.33
45 7 0.19
46 17 0.47
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (44 bp):
TATATTTTAACATATTATATTACTCATTATTTATCATATTAATA
Found at i:46670583 original size:42 final size:41
Alignment explanation
Indices: 46670471--46670592 Score: 103
Period size: 42 Copynumber: 3.0 Consensus size: 41
46670461 TATTTTTATC
* * *
46670471 ATATTAATATATATTTTAAC-ATATATCA-TTACTCATTA-TT
1 ATATTATTTTATATTTTAACAATATATTATTTA-T-ATTATTT
* *
46670511 -TATTATATTATATTTTCATCACATA-A-TATTTATATATATTT
1 ATATTATTTTATATTTT-AACA-ATATATTATTTATAT-TATTT
46670552 ATATTATTTTATATTTTAACAATATATTATTTCATATTATT
1 ATATTATTTTATATTTTAACAATATATTATTT-ATATTATT
46670593 ATTATCTAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 18
0.72 0.08 0.20
Matches are distributed among these distances:
39 15 0.23
40 9 0.14
41 10 0.15
42 27 0.42
43 4 0.06
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (41 bp):
ATATTATTTTATATTTTAACAATATATTATTTATATTATTT
Found at i:46670595 original size:16 final size:16
Alignment explanation
Indices: 46670576--46670650 Score: 61
Period size: 14 Copynumber: 4.9 Consensus size: 16
46670566 TTTAACAATA
46670576 TATTATTTCATATTAT
1 TATTATTTCATATTAT
* *
46670592 TATTATCTAATA-TA-
1 TATTATTTCATATTAT
* *
46670606 TATTTTTTCATGTATAT
1 TATTATTTCATAT-TAT
*
46670623 TATTA-TTCACATTAT
1 TATTATTTCATATTAT
46670638 TA-T-TTTCATATTA
1 TATTATTTCATATTA
46670651 AATTGATATT
Statistics
Matches: 45, Mismatches: 10, Indels: 10
0.69 0.15 0.15
Matches are distributed among these distances:
14 17 0.38
15 7 0.16
16 17 0.38
17 4 0.09
ACGTcount: A:0.32, C:0.08, G:0.01, T:0.59
Consensus pattern (16 bp):
TATTATTTCATATTAT
Found at i:46670609 original size:30 final size:29
Alignment explanation
Indices: 46670563--46670650 Score: 90
Period size: 30 Copynumber: 3.0 Consensus size: 29
46670553 TATTATTTTA
46670563 TATT-TTAACAATATATTATTTCATATTAT
1 TATTATTAAC-ATATATTATTTCATATTAT
* * *
46670592 TATTATCTAATATATATTTTTTCATGTATAT
1 TATTAT-TAACATATATTATTTCATAT-TAT
*
46670623 TATTATTCACAT-TATTATTTTCATATTA
1 TATTATTAACATATATTA-TTTCATATTA
46670651 AATTGATATT
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
29 10 0.21
30 26 0.54
31 12 0.25
ACGTcount: A:0.34, C:0.08, G:0.01, T:0.57
Consensus pattern (29 bp):
TATTATTAACATATATTATTTCATATTAT
Found at i:46670798 original size:21 final size:22
Alignment explanation
Indices: 46670764--46670807 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
46670754 TATTTCAAAA
*
46670764 TTCATTATTAATT-ACTATGTT
1 TTCATTATTAATTAAATATGTT
46670785 TTCATGTATT-ATTAAATATGTT
1 TTCAT-TATTAATTAAATATGTT
46670807 T
1 T
46670808 ATTATCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (22 bp):
TTCATTATTAATTAAATATGTT
Found at i:46674180 original size:20 final size:20
Alignment explanation
Indices: 46674155--46674199 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
46674145 TTCGCGGGAG
46674155 TGTGCTCTCTGAAATGGAAA
1 TGTGCTCTCTGAAATGGAAA
46674175 TGTGCTCTCTGAAATGGAAA
1 TGTGCTCTCTGAAATGGAAA
46674195 TGTGC
1 TGTGC
46674200 GCACATGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (20 bp):
TGTGCTCTCTGAAATGGAAA
Found at i:46674756 original size:23 final size:23
Alignment explanation
Indices: 46674730--46674774 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
46674720 TGGGTATGTG
*
46674730 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
46674753 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
46674775 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:46677018 original size:22 final size:23
Alignment explanation
Indices: 46676970--46677019 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
46676960 TAAAGGTTAT
* *
46676970 GTTTTTTTTTTCAATGATAGTAG
1 GTTTTTTTTATCAATGATAGTAA
* *
46676993 GTTTTTTTTAT-AATTATATTAA
1 GTTTTTTTTATCAATGATAGTAA
46677015 GTTTT
1 GTTTT
46677020 GATTAAATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
22 13 0.57
23 10 0.43
ACGTcount: A:0.24, C:0.02, G:0.12, T:0.62
Consensus pattern (23 bp):
GTTTTTTTTATCAATGATAGTAA
Found at i:46687399 original size:20 final size:20
Alignment explanation
Indices: 46687376--46687423 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
46687366 TAAATATAGA
46687376 TTTTAAATTATAATTATT-TT
1 TTTTAAATT-TAATTATTATT
* * *
46687396 TTTTACATTTTATTCTTATT
1 TTTTAAATTTAATTATTATT
46687416 TTTTAAAT
1 TTTTAAAT
46687424 ATTTCACATT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTTAAATTTAATTATTATT
Found at i:46687504 original size:20 final size:20
Alignment explanation
Indices: 46687476--46687514 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
46687466 TTTGTATATG
*
46687476 ATAATATAATATT-AAAATAA
1 ATAAAATAA-ATTGAAAATAA
46687496 ATAAAATAAATTGAAAATA
1 ATAAAATAAATTGAAAATA
46687515 TTTTCTAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (20 bp):
ATAAAATAAATTGAAAATAA
Found at i:46689949 original size:27 final size:27
Alignment explanation
Indices: 46689909--46689970 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
46689899 TTAATCTTAT
* **
46689909 TCAACC-GATTTGTATCGCCTCACGGA
1 TCAACCAGTTTTGTATCGCCTCACAAA
*
46689935 TCAACCAGTTTTGTATCGGCTCACAAA
1 TCAACCAGTTTTGTATCGCCTCACAAA
46689962 TCAACCAGT
1 TCAACCAGT
46689971 CTAATGCCTC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 6 0.19
27 25 0.81
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
TCAACCAGTTTTGTATCGCCTCACAAA
Found at i:46691504 original size:27 final size:25
Alignment explanation
Indices: 46691378--46691575 Score: 123
Period size: 27 Copynumber: 8.1 Consensus size: 25
46691368 CGATATATAA
46691378 ATATACAT-ATAT-GTATT-AAAAT
1 ATATACATAATATAGTATTAAAAAT
**
46691400 ATATACATAATAATAAAATTAAAAAGT
1 ATATACATAAT-ATAGTATTAAAAA-T
*
46691427 GTATAC-----ATAGTATTAAAAAT
1 ATATACATAATATAGTATTAAAAAT
* * **
46691447 ATGTACATAATATGGCGTTAAAAAT
1 ATATACATAATATAGTATTAAAAAT
*
46691472 ACATACATAATATAGTTATTAAAAAAT
1 ATATACATAATATAG-TATT-AAAAAT
* *
46691499 ATATACATAAAATAATATGTAAAAA-
1 ATATACATAATATAGTAT-TAAAAAT
* *
46691524 A-AT--GTAATATAGTATTAGAAAT
1 ATATACATAATATAGTATTAAAAAT
* *
46691546 ATACACAATATATATGGTATTAAAAAT
1 ATATAC-ATA-ATATAGTATTAAAAAT
46691573 ATA
1 ATA
46691576 GTATTAAATA
Statistics
Matches: 131, Mismatches: 26, Indels: 33
0.69 0.14 0.17
Matches are distributed among these distances:
20 5 0.04
21 16 0.12
22 18 0.14
23 3 0.02
24 4 0.03
25 27 0.21
26 16 0.12
27 42 0.32
ACGTcount: A:0.54, C:0.05, G:0.08, T:0.33
Consensus pattern (25 bp):
ATATACATAATATAGTATTAAAAAT
Found at i:46691579 original size:14 final size:16
Alignment explanation
Indices: 46691552--46691597 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 16
46691542 AAATATACAC
* *
46691552 AATATATATGGTATTA
1 AATACATATAGTATTA
46691568 AA-A-ATATAGTATTA
1 AATACATATAGTATTA
46691582 AATACATATAAGTATT
1 AATACATAT-AGTATT
46691598 GATTAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 12 0.46
15 2 0.08
16 6 0.23
17 6 0.23
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (16 bp):
AATACATATAGTATTA
Found at i:46692037 original size:24 final size:23
Alignment explanation
Indices: 46691967--46692038 Score: 60
Period size: 24 Copynumber: 3.0 Consensus size: 23
46691957 AAATGTATAT
*
46691967 ATATATACGTAATATAGAATTTAA-A
1 ATATATAC-TAATATA-TA-TTAAGA
*
46691992 ATATA-ACTAATATAT-TAAAAGA
1 ATATATACTAATATATAT-TAAGA
46692014 ATATATACATAATATATATTAAGA
1 ATATATAC-TAATATATATTAAGA
46692038 A
1 A
46692039 AAATAATAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 11
0.74 0.06 0.21
Matches are distributed among these distances:
20 1 0.03
21 2 0.05
22 6 0.15
23 9 0.23
24 15 0.38
25 6 0.15
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.35
Consensus pattern (23 bp):
ATATATACTAATATATATTAAGA
Found at i:46692138 original size:22 final size:21
Alignment explanation
Indices: 46692088--46692139 Score: 52
Period size: 22 Copynumber: 2.3 Consensus size: 21
46692078 ATACATATAC
*
46692088 ATATAAGTGTTAAGTAAAAATA
1 ATATAA-TGCTAAGTAAAAATA
46692110 ATAATAATGCTAA-TAAATAATAA
1 AT-ATAATGCTAAGTAAA-AAT-A
46692133 ATATAAT
1 ATATAAT
46692140 AATAGTAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 4 0.15
22 15 0.58
23 7 0.27
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.33
Consensus pattern (21 bp):
ATATAATGCTAAGTAAAAATA
Found at i:46692142 original size:19 final size:19
Alignment explanation
Indices: 46692120--46692159 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
46692110 ATAATAATGC
46692120 TAATAAATAAT-AAATATAA
1 TAAT-AATAATAAAATATAA
*
46692139 TAATAGTAATAAAATATAA
1 TAATAATAATAAAATATAA
46692158 TA
1 TA
46692160 GTATACATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (19 bp):
TAATAATAATAAAATATAA
Found at i:46698857 original size:40 final size:40
Alignment explanation
Indices: 46698802--46698896 Score: 136
Period size: 40 Copynumber: 2.4 Consensus size: 40
46698792 CAAAGTTGGA
* *
46698802 CGGGCTAAGTCCCGAAGGCATTTCTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTCTGCGAGTGACCATATC
* *
46698842 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACCATATC
1 CGGGCTAAGTCCCGAAGGCATTTCTGCGAGTGACCATATC
* *
46698882 TGGGCTAAGACCCGA
1 CGGGCTAAGTCCCGA
46698897 TGGCCTTGCG
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.24
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTCTGCGAGTGACCATATC
Found at i:46707624 original size:58 final size:58
Alignment explanation
Indices: 46707447--46707626 Score: 247
Period size: 58 Copynumber: 3.1 Consensus size: 58
46707437 TCATTGTCAT
* * * ** * * *
46707447 TTTTTATTTTTATTTTGGAGAAAACCA-CACTTGTTTCAAAATGATTC-CATTTCTCCA
1 TTTTCATTTTCATTTTGGAGAAAACCATAAC-CATTTCCAAATGTTTCTCACTTCTCCA
* *
46707504 TTTTTATTTTCATTTTAGAGAAAACCATAACCATTTCCAAATGTTTCTCACTTCTCCA
1 TTTTCATTTTCATTTTGGAGAAAACCATAACCATTTCCAAATGTTTCTCACTTCTCCA
46707562 TTTTCATTTTCATTTTGGAGAAAACCATAACCATTTCCAAATGTTTCTCACTTCTCCA
1 TTTTCATTTTCATTTTGGAGAAAACCATAACCATTTCCAAATGTTTCTCACTTCTCCA
46707620 TTTTCAT
1 TTTTCAT
46707627 CATTTCTGTT
Statistics
Matches: 111, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
57 37 0.33
58 74 0.67
ACGTcount: A:0.28, C:0.21, G:0.07, T:0.44
Consensus pattern (58 bp):
TTTTCATTTTCATTTTGGAGAAAACCATAACCATTTCCAAATGTTTCTCACTTCTCCA
Found at i:46708381 original size:20 final size:20
Alignment explanation
Indices: 46708365--46708402 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
46708355 TATCAATGTC
46708365 TCTACTGTCAGTCCAATCGA
1 TCTACTGTCAGTCCAATCGA
*
46708385 TGTACTGTCAGTCCAATC
1 TCTACTGTCAGTCCAATC
46708403 AGTCATATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.32
Consensus pattern (20 bp):
TCTACTGTCAGTCCAATCGA
Found at i:46711134 original size:5 final size:5
Alignment explanation
Indices: 46711115--46711229 Score: 66
Period size: 5 Copynumber: 23.6 Consensus size: 5
46711105 TAATGTAAAT
* *
46711115 TATAA TATAA -A-AA TATAA TATAA TGT-A TATAA TATAA TATAA -AAAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
* * * *
46711161 TATCA TGAT-A TATAG TAAAA TATAA TATGTAA TA-AA TAT-A TACAAA
1 TATAA T-ATAA TATAA TATAA TATAA TA--TAA TATAA TATAA TA-TAA
*
46711207 TAGAA TATAA TGA-AA TATAA TAT
1 TATAA TATAA T-ATAA TATAA TAT
46711230 GATAAGGGAT
Statistics
Matches: 85, Mismatches: 12, Indels: 26
0.69 0.10 0.21
Matches are distributed among these distances:
3 2 0.02
4 18 0.21
5 54 0.64
6 6 0.07
7 5 0.06
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (5 bp):
TATAA
Found at i:46711156 original size:32 final size:30
Alignment explanation
Indices: 46711091--46711188 Score: 117
Period size: 30 Copynumber: 3.1 Consensus size: 30
46711081 TAATTTACAA
*
46711091 ATAAAAATATATGATAATGTAAATTATAAT
1 ATAAAAATATATGATAATGTAAAATATAAT
46711121 ATAAAAATATAAT-ATAATGTATATAATATAAT
1 ATAAAAATAT-ATGATAATGTA-A-AATATAAT
46711153 ATAAAAAATATCATGATATATAGTAAAATATAAT
1 AT-AAAAATAT-ATGATA-AT-GTAAAATATAAT
46711187 AT
1 AT
46711189 GTAATAAATA
Statistics
Matches: 59, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
30 18 0.31
31 3 0.05
32 9 0.15
33 10 0.17
34 13 0.22
35 3 0.05
36 3 0.05
ACGTcount: A:0.58, C:0.01, G:0.05, T:0.36
Consensus pattern (30 bp):
ATAAAAATATATGATAATGTAAAATATAAT
Found at i:46711163 original size:19 final size:19
Alignment explanation
Indices: 46711126--46711188 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
46711116 ATAATATAAA
***
46711126 AATATAATATAATGTATAT
1 AATATAATATAAAAAATAT
46711145 AATATAATATAAAAAATAT
1 AATATAATATAAAAAATAT
* *
46711164 CATGAT-ATATAGTAAAATAT
1 AAT-ATAATATA-AAAAATAT
46711184 AATAT
1 AATAT
46711189 GTAATAAATA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
19 25 0.69
20 11 0.31
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.37
Consensus pattern (19 bp):
AATATAATATAAAAAATAT
Found at i:46711307 original size:64 final size:64
Alignment explanation
Indices: 46711239--46711580 Score: 269
Period size: 64 Copynumber: 5.2 Consensus size: 64
46711229 TGATAAGGGA
46711239 TATATAAAATAATAGTAATAACATAATAAGTATTTTACATATAAAAATGTAGTAACATAAATAG
1 TATATAAAATAATAGTAATAACATAATAAGTATTTTACATATAAAAATGTAGTAACATAAATAG
* ** * * * * * * * **
46711303 TATATAATATAA-AACATATAACAAAAATAGAATAAATATATATATAATGAAATATAATATGAT-
1 TATATAAAATAATAGTA-ATAAC-ATAATA-AGT-ATTTTACATATAA--AAATGTAGTAACATA
**
46711366 AAGGG
60 AATAG
46711371 ATATATAAAATAATAGTAATAACATAATAAGTATTTTACATATAAAAATGTAGTAACATAAATAG
1 -TATATAAAATAATAGTAATAACATAATAAGTATTTTACATATAAAAATGTAGTAACATAAATAG
* ** * * * * * * * **
46711436 TATATAATATAA-AACATATAACAAAAATAGAATAAATATATATATAATGAAATATAATATGAT-
1 TATATAAAATAATAGTA-ATAAC-ATAATA-AGT-ATTTTACATATAA--AAATGTAGTAACATA
**
46711499 AAGGG
60 AATAG
46711504 ATATATAAAATAATAGTAATAACATAATAAGTATTTTACATATAAAAATGTAGTAACATAAATAG
1 -TATATAAAATAATAGTAATAACATAATAAGTATTTTACATATAAAAATGTAGTAACATAAATAG
*
46711569 TATATAATATAA
1 TATATAAAATAA
46711581 AACATATAAC
Statistics
Matches: 203, Mismatches: 57, Indels: 36
0.69 0.19 0.12
Matches are distributed among these distances:
63 4 0.02
64 63 0.31
65 16 0.08
66 24 0.12
67 24 0.12
68 16 0.08
69 52 0.26
70 4 0.02
ACGTcount: A:0.57, C:0.04, G:0.08, T:0.32
Consensus pattern (64 bp):
TATATAAAATAATAGTAATAACATAATAAGTATTTTACATATAAAAATGTAGTAACATAAATAG
Found at i:46711658 original size:133 final size:133
Alignment explanation
Indices: 46711211--46711624 Score: 828
Period size: 133 Copynumber: 3.1 Consensus size: 133
46711201 TACAAATAGA
46711211 ATATAATGAAATATAATATGATAAGGGATATATAAAATAATAGTAATAACATAATAAGTATTTTA
1 ATATAATGAAATATAATATGATAAGGGATATATAAAATAATAGTAATAACATAATAAGTATTTTA
46711276 CATATAAAAATGTAGTAACATAAATAGTATATAATATAAAACATATAACAAAAATAGAATAAATA
66 CATATAAAAATGTAGTAACATAAATAGTATATAATATAAAACATATAACAAAAATAGAATAAATA
46711341 TAT
131 TAT
46711344 ATATAATGAAATATAATATGATAAGGGATATATAAAATAATAGTAATAACATAATAAGTATTTTA
1 ATATAATGAAATATAATATGATAAGGGATATATAAAATAATAGTAATAACATAATAAGTATTTTA
46711409 CATATAAAAATGTAGTAACATAAATAGTATATAATATAAAACATATAACAAAAATAGAATAAATA
66 CATATAAAAATGTAGTAACATAAATAGTATATAATATAAAACATATAACAAAAATAGAATAAATA
46711474 TAT
131 TAT
46711477 ATATAATGAAATATAATATGATAAGGGATATATAAAATAATAGTAATAACATAATAAGTATTTTA
1 ATATAATGAAATATAATATGATAAGGGATATATAAAATAATAGTAATAACATAATAAGTATTTTA
46711542 CATATAAAAATGTAGTAACATAAATAGTATATAATATAAAACATATAACAAAAATAGAATAAATA
66 CATATAAAAATGTAGTAACATAAATAGTATATAATATAAAACATATAACAAAAATAGAATAAATA
46711607 TAT
131 TAT
46711610 ATATAATGAAATATA
1 ATATAATGAAATATA
46711625 TAATAAAAGA
Statistics
Matches: 281, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
133 281 1.00
ACGTcount: A:0.57, C:0.04, G:0.08, T:0.31
Consensus pattern (133 bp):
ATATAATGAAATATAATATGATAAGGGATATATAAAATAATAGTAATAACATAATAAGTATTTTA
CATATAAAAATGTAGTAACATAAATAGTATATAATATAAAACATATAACAAAAATAGAATAAATA
TAT
Found at i:46713399 original size:43 final size:44
Alignment explanation
Indices: 46713286--46713413 Score: 177
Period size: 44 Copynumber: 2.9 Consensus size: 44
46713276 GCCATGTTGA
* * *
46713286 TATCTTTGATTTGCTCCCTGACAATACAAGGATGTCAAATCTGC
1 TATCTTCGATTTGCTCCCTGACAATACAAAGATGCCAAATCTGC
* * * *
46713330 TATCTTCGATCTGCTCTCTGATAATACAAAGATGCCAAATTTGC
1 TATCTTCGATTTGCTCCCTGACAATACAAAGATGCCAAATCTGC
*
46713374 T-TCTTCGATTTGTTCCCTGACAATACAAAGATGCCAAATC
1 TATCTTCGATTTGCTCCCTGACAATACAAAGATGCCAAATC
46713414 ATCTTAGATT
Statistics
Matches: 72, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
43 34 0.47
44 38 0.53
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (44 bp):
TATCTTCGATTTGCTCCCTGACAATACAAAGATGCCAAATCTGC
Found at i:46713543 original size:87 final size:88
Alignment explanation
Indices: 46713375--46713725 Score: 251
Period size: 87 Copynumber: 4.0 Consensus size: 88
46713365 CAAATTTGCT
* * * * * * ***
46713375 TCTTCGATTTGTTCCCTG-ACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAAC
1 TCTTCGATTTGTTCCTTGTACAACACAAGGACGCCAAATCATCTTGGATCTGCTTCAGTATAAAC
* *
46713439 A-CGTGAAAGCCAAATCTGCTATG
66 ATC-TGAAAGTCAGATCTGCTATG
* *
46713462 TCTTCAATTTGTTCCTTGTAC-ACACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAAC
1 TCTTCGATTTGTTCCTTGTACAACACAAGGACGCCAAATCATCTTGGATCTGCTTCAGTATAAAC
* * *
46713526 AGCTGAAGGTTAGATCTGCTATG
66 ATCTGAAAGTCAGATCTGCTATG
* * * ** * * *
46713549 T-GTC--TGCT-TTCC--GT-CGAATA-TGGAGACGCCAGATTTGTTATCTTGGATCTGCTTTGA
1 TCTTCGAT-TTGTTCCTTGTAC-AACACAAG-GACGCCA-A---ATCATCTTGGATCTGC-TTCA
46713606 TGTGA-AAACATCTGAAAGTCAGATCTGCTATG
58 -GT-ATAAACATCTGAAAGTCAGATCTGCTATG
* * *
46713638 TCTTCGATTTGCTCCTTGTA-AACACAAGAACGCCAAATCATCTTGGATCTGCTTCAGTAAAAAC
1 TCTTCGATTTGTTCCTTGTACAACACAAGGACGCCAAATCATCTTGGATCTGCTTCAGTATAAAC
* *
46713702 ATCTGAAGGTTAGATCTGCTATG
66 ATCTGAAAGTCAGATCTGCTATG
46713725 T
1 T
46713726 ATTTGCTCTC
Statistics
Matches: 205, Mismatches: 37, Indels: 44
0.72 0.13 0.15
Matches are distributed among these distances:
81 1 0.00
82 3 0.01
83 8 0.04
84 6 0.03
85 1 0.00
86 3 0.01
87 112 0.55
88 9 0.04
89 41 0.20
90 3 0.01
91 1 0.00
92 5 0.02
93 9 0.04
94 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (88 bp):
TCTTCGATTTGTTCCTTGTACAACACAAGGACGCCAAATCATCTTGGATCTGCTTCAGTATAAAC
ATCTGAAAGTCAGATCTGCTATG
Found at i:46713833 original size:177 final size:176
Alignment explanation
Indices: 46713442--46714004 Score: 865
Period size: 176 Copynumber: 3.2 Consensus size: 176
46713432 CGTAAACACG
* * * * *
46713442 TGAAAGCCAAATCTGCTATGTCTTCAATTTGTTCCTTGTACACACAAGGATGCCAAATCATCTTG
1 TGAAAGTCAGATCTGCTATGTCTTCAATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTG
* * *
46713507 GATCTGCTTCAGTATAAACAGCTGAAGGTTAGATCTGCTATGTGTCTGCTTTCCGTCGAATATGG
66 GATCTGCTTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGG
*
46713572 AGACGCCAGATTTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
131 AGACGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
* *
46713618 TGAAAGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAACGCCAAATCATCTTG
1 TGAAAGTCAGATCTGCTATGTCTTCAATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTG
* * * *
46713683 GATCTGCTTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTATTTGCTCTCCATTTGAATATG
66 GATCTGCTTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCC-GTCGAATATG
* * *
46713748 GAGATGCCAGATCTATTATCTTGGATCTGCTTTGATGTGAGAACATC
130 GAGACGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
* * * * *
46713795 CGAAAGTCAGATCTTCTATGTTTTCAATTTACTCCTTGTAGACACAAGAATGCCAAATCATCTTG
1 TGAAAGTCAGATCTGCTATGTCTTCAATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTG
* * *
46713860 GATCTACTTTAGAAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGG
66 GATCTGCTTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGG
*
46713925 AGACGCCAGATCTGTTATCTTGGATCTTCTTTGATGTGAAAACATC
131 AGACGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
*
46713971 TGAAAGTCAGATCTGCTATGTCTTCGATTTGCTC
1 TGAAAGTCAGATCTGCTATGTCTTCAATTTGCTC
46714005 TCCGTCGAAG
Statistics
Matches: 345, Mismatches: 41, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
176 187 0.54
177 158 0.46
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (176 bp):
TGAAAGTCAGATCTGCTATGTCTTCAATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTG
GATCTGCTTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGG
AGACGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
Found at i:46714029 original size:177 final size:175
Alignment explanation
Indices: 46713442--46714083 Score: 799
Period size: 176 Copynumber: 3.6 Consensus size: 175
46713432 CGTAAACACG
* * * * * *
46713442 TGAAAGCCAAATCTGCTATGTCTTCAATTTGTTCCTTGTACACACAAG-GATGCCAAATCATCTT
1 TGAAAGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGT-GA-ACAAGAGAAGCCAAATCATCTT
* * *
46713506 GGATCTGCTTCAGTATAAACAGCTGAAGGTTAGATCTGCTATGTGTCTGCTTTCCGTCGAATATG
64 GGATCTGCTTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATG
*
46713571 GAGACGCCAGATTTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
129 GAGACGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
*
46713618 TGAAAGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACA-AGAACGCCAAATCATCTT
1 TGAAAGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTGAACA-AGAGAA-GCCAAATCATCTT
* * * *
46713682 GGATCTGCTTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTATTTGCTCTCCATTTGAATAT
64 GGATCTGCTTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCC-GTCGAATAT
* * *
46713747 GGAGATGCCAGATCTATTATCTTGGATCTGCTTTGATGTGAGAACATC
128 GGAGACGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
* * * * * *
46713795 CGAAAGTCAGATCTTCTATGTTTTCAATTTACTCCTTGTAGACACAAGA-ATGCCAAATCATCTT
1 TGAAAGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGT-GA-ACAAGAGAAGCCAAATCATCTT
* * *
46713859 GGATCTACTTTAGAAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATG
64 GGATCTGCTTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATG
*
46713924 GAGACGCCAGATCTGTTATCTTGGATCTTCTTTGATGTGAAAACATC
129 GAGACGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
* *
46713971 TGAAAGTCAGATCTGCTATGTCTTCGATTTGCT-CTCCGTCGAAGATAGAGAAGCCAAATCTTGT
1 TGAAAGTCAGATCTGCTATGTCTTCGATTTGCTCCT-TGT-GAACA-AGAGAAGCCAAATC----
** **
46714035 TATCTTGGATCTGCTTCAGTGTAAACA-CATGAAGGCCAGATCTGCTATG
59 -ATCTTGGATCTGCTTCAGTAAAAACATC-TGAAGGTTAGATCTGCTATG
46714084 CTTTGGTCTG
Statistics
Matches: 399, Mismatches: 51, Indels: 26
0.84 0.11 0.05
Matches are distributed among these distances:
174 3 0.01
175 8 0.02
176 184 0.46
177 157 0.39
178 3 0.01
179 4 0.01
181 1 0.00
182 39 0.10
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (175 bp):
TGAAAGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTGAACAAGAGAAGCCAAATCATCTTGG
ATCTGCTTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGA
GACGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
Found at i:46714080 original size:93 final size:94
Alignment explanation
Indices: 46713553--46714083 Score: 323
Period size: 87 Copynumber: 5.9 Consensus size: 94
46713543 GCTATGTGTC
* * * * * * *
46713553 TGCTTTCCGTCGAATATGGAGACGCCAGATTTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
1 TGCTCTCCGTCGAAGATAGAGAAGCCAAATCTGTTATCTTGGATCTGCTTTCATGTGAAAACATC
*
46713618 TGAAAGTCAGATCTGCTATGTCTTCGATT
66 TGAAAGCCAGATCTGCTATGTCTTCGATT
* * * * *
46713647 TGCTC-CTTGT-AAACACA-AGAACGCCAAATC----ATCTTGGATCTGC-TTCA-GTAAAAACA
1 TGCTCTC-CGTCGAAGATAGAGAA-GCCAAATCTGTTATCTTGGATCTGCTTTCATGTGAAAACA
* **
46713703 TCTGAAGGTTAGATCTGCTATG---T--ATT
64 TCTGAAAGCCAGATCTGCTATGTCTTCGATT
* * * * * * * * *
46713729 TGCTCTCCATTTGAATATGGAGATGCCAGATCTATTATCTTGGATCTGCTTTGATGTGAGAACAT
1 TGCTCTCC-GTCGAAGATAGAGAAGCCAAATCTGTTATCTTGGATCTGCTTTCATGTGAAAACAT
* * * * *
46713794 CCGAAAGTCAGATCTTCTATGTTTTCAATT
65 CTGAAAGCCAGATCTGCTATGTCTTCGATT
* * * * * * **
46713824 TACTC-CTTGTAGACACA-AGA-ATGCCAAATC----ATCTTGGATCTACTTT-A-GAAAAAACA
1 TGCTCTC-CGTCGA-AGATAGAGAAGCCAAATCTGTTATCTTGGATCTGCTTTCATGTGAAAACA
* ** *
46713880 TCTGAAGGTTAGATCTGCTATG---T-G-TC
64 TCTGAAAGCCAGATCTGCTATGTCTTCGATT
* * * * * *
46713906 TGCTCTCCGTCGAATATGGAGACGCCAGATCTGTTATCTTGGATCTTCTTTGATGTGAAAACATC
1 TGCTCTCCGTCGAAGATAGAGAAGCCAAATCTGTTATCTTGGATCTGCTTTCATGTGAAAACATC
*
46713971 TGAAAGTCAGATCTGCTATGTCTTCGATT
66 TGAAAGCCAGATCTGCTATGTCTTCGATT
*
46714000 TGCTCTCCGTCGAAGATAGAGAAGCCAAATCTTGTTATCTTGGATCTGC-TTCA-GTGTAAACA-
1 TGCTCTCCGTCGAAGATAGAGAAGCCAAATC-TGTTATCTTGGATCTGCTTTCATGTGAAAACAT
*
46714062 CATGAAGGCCAGATCTGCTATG
65 C-TGAAAGCCAGATCTGCTATG
46714084 CTTTGGTCTG
Statistics
Matches: 335, Mismatches: 67, Indels: 71
0.71 0.14 0.15
Matches are distributed among these distances:
81 2 0.01
82 19 0.06
83 11 0.03
84 12 0.04
85 3 0.01
87 67 0.20
88 18 0.05
89 58 0.17
90 25 0.07
92 5 0.01
93 47 0.14
94 43 0.13
95 25 0.07
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (94 bp):
TGCTCTCCGTCGAAGATAGAGAAGCCAAATCTGTTATCTTGGATCTGCTTTCATGTGAAAACATC
TGAAAGCCAGATCTGCTATGTCTTCGATT
Found at i:46725426 original size:17 final size:17
Alignment explanation
Indices: 46725367--46725426 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
46725357 TAATAAATTT
46725367 AAAATATAATATATAATAA
1 AAAATATAAT-TAT-ATAA
46725386 AAAATAT-ATT-TAT-A
1 AAAATATAATTATATAA
*
46725400 AGAATAATAATTATATAA
1 AAAAT-ATAATTATATAA
46725418 AAAATATAA
1 AAAATATAA
46725427 AATATAATGG
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 5 0.14
15 4 0.11
16 4 0.11
17 8 0.23
18 7 0.20
19 7 0.20
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAATATAATTATATAA
Found at i:46725911 original size:22 final size:21
Alignment explanation
Indices: 46725876--46725994 Score: 68
Period size: 19 Copynumber: 5.7 Consensus size: 21
46725866 AAAAGGTATC
* *
46725876 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
46725897 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
46725920 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* * *
46725939 TGCAAATTGTATCATATCTAAGAT
1 TACAAA-T-CAT-ATCTCTAAGAT
* *
46725963 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
46725982 TGC-AATCATATCT
1 TACAAATCATATCT
46725995 AAGATTGTAT
Statistics
Matches: 80, Mismatches: 9, Indels: 19
0.74 0.08 0.18
Matches are distributed among these distances:
18 6 0.08
19 24 0.30
20 2 0.03
21 6 0.08
22 18 0.22
23 11 0.14
24 13 0.16
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:46725919 original size:23 final size:22
Alignment explanation
Indices: 46725876--46725976 Score: 66
Period size: 24 Copynumber: 4.6 Consensus size: 22
46725866 AAAAGGTATC
* *
46725876 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
46725897 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
46725920 TGCATATCATA---TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
* **
46725939 TGCAAATTGTATCATATCTAAGAT
1 TACAAATCATATC-T-TCTAAGAT
* *
46725963 TGCATATCATATCT
1 TACAAATCATATCT
46725977 AAGATTGCAA
Statistics
Matches: 63, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
19 16 0.25
21 3 0.05
22 15 0.24
23 11 0.17
24 18 0.29
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.37
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:46725955 original size:24 final size:21
Alignment explanation
Indices: 46725889--46726020 Score: 117
Period size: 19 Copynumber: 6.6 Consensus size: 21
46725879 AAATTAAATC
*
46725889 TCTAAGATTACAAA-ATCATA
1 TCTAAGATTGCAAATATCATA
46725909 TCTTCTAAGATTGC--ATATCATA
1 ---TCTAAGATTGCAAATATCATA
46725931 TCTAAGATTGCAAATTGTATCATA
1 TCTAAGATTGCAAA---TATCATA
46725955 TCTAAGATTGC--ATATCATA
1 TCTAAGATTGCAAATATCATA
46725974 TCTAAGATTGC--A-ATCATA
1 TCTAAGATTGCAAATATCATA
46725992 TCTAAGATTG----TATCATA
1 TCTAAGATTGCAAATATCATA
46726009 TCTAAGATTGCA
1 TCTAAGATTGCA
46726021 TATCATTGAA
Statistics
Matches: 99, Mismatches: 1, Indels: 22
0.81 0.01 0.18
Matches are distributed among these distances:
17 16 0.16
18 16 0.16
19 30 0.30
21 2 0.02
22 7 0.07
23 10 0.10
24 18 0.18
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (21 bp):
TCTAAGATTGCAAATATCATA
Found at i:46725963 original size:43 final size:38
Alignment explanation
Indices: 46725889--46726026 Score: 156
Period size: 43 Copynumber: 3.5 Consensus size: 38
46725879 AAATTAAATC
*
46725889 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTGC-AAATCATA---TCTAAGATTGCATATCATA
46725931 TCTAAGATTGCAAATTGTATCATATCTAAGATTGCATATCATA
1 TCTAAGATTGC-AA----ATCATATCTAAGATTGCATATCATA
46725974 TCTAAGATTGC-AATCATATCTAAGATTG--TATCATA
1 TCTAAGATTGCAAATCATATCTAAGATTGCATATCATA
*
46726009 TCTAAGATTGCATATCAT
1 TCTAAGATTGCAAATCAT
46726027 TGAAGATTAT
Statistics
Matches: 89, Mismatches: 2, Indels: 16
0.83 0.02 0.15
Matches are distributed among these distances:
35 18 0.20
36 5 0.06
37 16 0.18
41 1 0.01
42 13 0.15
43 30 0.34
46 6 0.07
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (38 bp):
TCTAAGATTGCAAATCATATCTAAGATTGCATATCATA
Found at i:46726034 original size:17 final size:19
Alignment explanation
Indices: 46725912--46726026 Score: 164
Period size: 19 Copynumber: 5.9 Consensus size: 19
46725902 AATCATATCT
46725912 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
46725931 TCTAAGATTGCAAATTGTATCATA
1 TCTAAGATTGC--A---TATCATA
46725955 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
46725974 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
46725992 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
46726009 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
46726027 TGAAGATTAT
Statistics
Matches: 88, Mismatches: 0, Indels: 16
0.85 0.00 0.15
Matches are distributed among these distances:
17 16 0.18
18 16 0.18
19 36 0.41
21 1 0.01
22 1 0.01
24 18 0.20
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:46726185 original size:23 final size:22
Alignment explanation
Indices: 46726144--46726186 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
46726134 CTTGGACTTC
**
46726144 ATTTTTTTTTTGGGTTTATTAT
1 ATTTTTTTTTTGGACTTATTAT
46726166 ATTTTTGTTTTTGGACTTATT
1 ATTTTT-TTTTTGGACTTATT
46726187 TTTGGGCCCG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.14, C:0.02, G:0.14, T:0.70
Consensus pattern (22 bp):
ATTTTTTTTTTGGACTTATTAT
Found at i:46726584 original size:87 final size:87
Alignment explanation
Indices: 46726420--46726584 Score: 199
Period size: 87 Copynumber: 1.9 Consensus size: 87
46726410 ACAATAAAGA
* * *
46726420 GATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACGTGAAAGCCAAATCTGATGTGTCTTCG
1 GATGCCAAATCATCTTAGATCTGCTTCAGTGAAAACACGTGAAAGCCAAATCTGATATGTCTTCA
*
46726485 ATTTGCTCCTTGTGTACACAAG
66 ATCTGCTCCTTGTGTACACAAG
* * * * *
46726507 GATGCCAAATCATCTTGGATCTGCTTCAGT-AAAATCATC-TGAAGGTCAGATCTGCTATGTCTT
1 GATGCCAAATCATCTTAGATCTGCTTCAGTGAAAA-CA-CGTGAAAGCCAAATCTGATATGTCTT
* *
46726570 TAATCTGCTTCTTGT
64 CAATCTGCTCCTTGT
46726585 AAACTTATGA
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
86 3 0.05
87 61 0.94
88 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (87 bp):
GATGCCAAATCATCTTAGATCTGCTTCAGTGAAAACACGTGAAAGCCAAATCTGATATGTCTTCA
ATCTGCTCCTTGTGTACACAAG
Found at i:46726774 original size:261 final size:256
Alignment explanation
Indices: 46726340--46726822 Score: 698
Period size: 261 Copynumber: 1.9 Consensus size: 256
46726330 AAGACTATCA
*
46726340 TGTTGATATCTTCGATCTGCTCTCCGTCGAACACAGAGACGCCAAATCTGCTTCTTCGATTTGTT
1 TGTTGATATCTTCGATCTGCTCTCCGCCGAACACAGAGACGCCAAATCTGCTTCTTCGATTTGTT
* * * ** *
46726405 TTCTGACAATAAAGAGATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACGTGAAAGCCAAA
66 CTCTAACAATAAAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGCAAAAACCAAA
* * * *
46726470 TCTGATGTGTCTTCGATTTGCTCCTTGTGTACACAAGGATGCCAAATCATCTTGGATCTGCTTCA
131 TCAGATATGTCTTCGATTTGCTCCTTGTGAACACAAGGATGCCAAACCATCTTGGATCTGCTTCA
46726535 GTAAAATCATCTGAAGGTCAGATCTGCTATGTCTTTAATCTGCTTCTTGTAAACTTATGACTGTC
196 G-----TCATCTGAAGGTCAGATCTGCTATGTCTTTAATCTGCTTCTTGTAAACTTATGACTGTC
46726600 C
256 C
* * * * *
46726601 TGTTGATATCTTTGATCTGCTCTCCGCCGAATATAGAGACGCCAAATTTGTTTCTTCGATTTGTT
1 TGTTGATATCTTCGATCTGCTCTCCGCCGAACACAGAGACGCCAAATCTGCTTCTTCGATTTGTT
* * *
46726666 CTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGCAAAAACCAAA
66 CTCTAACAATAAAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGCAAAAACCAAA
* * *
46726731 TCAGCTATGTCTTCGATTTGTTTCTTGT-AAGCACAAGGATGCCAAACCATCTTGGATCTGCTTC
131 TCAGATATGTCTTCGATTTGCTCCTTGTGAA-CACAAGGATGCCAAACCATCTTGGATCTGCTTC
*
46726795 AGTCATCTGAAGGTTAGATCTGCTATGT
195 AGTCATCTGAAGGTCAGATCTGCTATGT
46726823 ATCTGCTCTC
Statistics
Matches: 198, Mismatches: 23, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
256 25 0.13
260 1 0.01
261 172 0.87
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.34
Consensus pattern (256 bp):
TGTTGATATCTTCGATCTGCTCTCCGCCGAACACAGAGACGCCAAATCTGCTTCTTCGATTTGTT
CTCTAACAATAAAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGCAAAAACCAAA
TCAGATATGTCTTCGATTTGCTCCTTGTGAACACAAGGATGCCAAACCATCTTGGATCTGCTTCA
GTCATCTGAAGGTCAGATCTGCTATGTCTTTAATCTGCTTCTTGTAAACTTATGACTGTCC
Found at i:46726997 original size:200 final size:202
Alignment explanation
Indices: 46726654--46727197 Score: 894
Period size: 205 Copynumber: 2.7 Consensus size: 202
46726644 AAATTTGTTT
*
46726654 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
** * *
46726719 GCAAAAACCAAATCAGCTATGTCTTCGATTTGTTTCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
46726784 GGATCTGCTTCA-GT-CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCATCGAAATGGAGA
131 GGATCTGCTTCAGGTACATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCATCGAAATGGAGA
**
46726847 TGTTAGA
196 TGCCAGA
* *
46726854 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
*
46726919 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGACGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
46726984 GGATCTGCTTCAGTGTAAACATCTGAAGTTTAGATCTGCTATGTATCTACTCTCCATCGAAATGG
131 GGATCTGCTTCAG-GT--ACATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCATCGAAATGG
46727049 AGATGCCAGA
193 AGATGCCAGA
*
46727059 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * *
46727124 GTGAAAGCCAAATCAGCTATATCTTCGATTTGTTCCTTGTAAGGACAATGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
46727189 AGATCTGCT
131 GGATCTGCT
46727198 ATGTATTTGC
Statistics
Matches: 319, Mismatches: 20, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
200 134 0.42
202 2 0.01
205 183 0.57
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (202 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGGTACATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCATCGAAATGGAGA
TGCCAGA
Found at i:46727177 original size:87 final size:85
Alignment explanation
Indices: 46727085--46727377 Score: 206
Period size: 87 Copynumber: 3.4 Consensus size: 85
46727075 GACAATACAG
*
46727085 AGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACACGTGAAAGCCAAATCAGCTATATCTTC
1 AGATGCCAAACCATCTTAGATTTGCTTCAGCGTAAACACGTGAAAGCCAAAT-AGCTATATCTTC
*
46727150 GATTTGTTCCTTGTAAGGACA
65 GATTTGTTCCTTGTAAGCACA
* * ** * * *
46727171 ATGATGCCAAACCATCTTAGATCTGCTATGTATTTGC-T-CTC-CGTCGAAATG-GAGAT-GCCA
1 A-GATGCCAAACCATCTTAGATTTGCT-T-CA---GCGTAAACACGT-GAAA-GCCAAATAGCTA
* **
46727231 -AACTTCGATTTGTT-CTCTG-ACAATACA
58 TATCTTCGATTTGTTCCT-TGTA-AGCACA
* * * * * * *
46727258 GAGATGCCAAATCATCTTAAATTTGCTTTAGCGTAAGCACGCGAAAACCAAATTAGCTATGTCTT
1 -AGATGCCAAACCATCTTAGATTTGCTTCAGCGTAAACACGTGAAAGCCAAA-TAGCTATATCTT
*
46727323 CGATTTGCTCCTTGTAAGCACA
64 CGATTTGTTCCTTGTAAGCACA
*
46727345 AGGATGCCAAACCATCTTGGATCTTGCTTCAGC
1 A-GATGCCAAACCATCTTAGAT-TTGCTTCAGC
46727378 CAGATCTACT
Statistics
Matches: 155, Mismatches: 30, Indels: 42
0.68 0.13 0.19
Matches are distributed among these distances:
82 2 0.01
83 1 0.01
84 7 0.05
85 5 0.03
86 9 0.06
87 98 0.63
88 17 0.11
89 4 0.03
90 8 0.05
91 2 0.01
92 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (85 bp):
AGATGCCAAACCATCTTAGATTTGCTTCAGCGTAAACACGTGAAAGCCAAATAGCTATATCTTCG
ATTTGTTCCTTGTAAGCACA
Found at i:46727325 original size:174 final size:174
Alignment explanation
Indices: 46727013--46727368 Score: 577
Period size: 174 Copynumber: 2.0 Consensus size: 174
46727003 CATCTGAAGT
*
46727013 TTAGATCTGCTATGTATCTACTCTCCATCGAAATGGAGATGCCAGACTTCGATTTGTTCTCTGAC
1 TTAGATCTGCTATGTATCTACTCTCCATCGAAATGGAGATGCCAAACTTCGATTTGTTCTCTGAC
* * *
46727078 AATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACACGTGAAAGCCAAATCAGCTA
66 AATACAGAGATGCCAAATCATCTTAAATTTGCTTCAGCGTAAACACGCGAAAACCAAATCAGCTA
* * *
46727143 TATCTTCGATTTGTTCCTTGTAAGGACAATGATGCCAAACCATC
131 TATCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATC
* * *
46727187 TTAGATCTGCTATGTATTTGCTCTCCGTCGAAATGGAGATGCCAAACTTCGATTTGTTCTCTGAC
1 TTAGATCTGCTATGTATCTACTCTCCATCGAAATGGAGATGCCAAACTTCGATTTGTTCTCTGAC
* * *
46727252 AATACAGAGATGCCAAATCATCTTAAATTTGCTTTAGCGTAAGCACGCGAAAACCAAATTAGCTA
66 AATACAGAGATGCCAAATCATCTTAAATTTGCTTCAGCGTAAACACGCGAAAACCAAATCAGCTA
*
46727317 TGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATC
131 TATCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATC
*
46727361 TTGGATCT
1 TTAGATCT
46727369 TGCTTCAGCC
Statistics
Matches: 167, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
174 167 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (174 bp):
TTAGATCTGCTATGTATCTACTCTCCATCGAAATGGAGATGCCAAACTTCGATTTGTTCTCTGAC
AATACAGAGATGCCAAATCATCTTAAATTTGCTTCAGCGTAAACACGCGAAAACCAAATCAGCTA
TATCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATC
Found at i:46731139 original size:6 final size:6
Alignment explanation
Indices: 46731113--46731200 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
46731103 AAGAAACATT
* * *
46731113 ATCAGA A-CTAGA ATTAGA ATCAGA ATCAAA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
46731162 ATCAGA ATCAGT ATCAGGTA AT-AGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
46731201 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 5 0.08
6 51 0.80
7 5 0.08
8 3 0.05
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:46731156 original size:25 final size:25
Alignment explanation
Indices: 46731128--46731197 Score: 83
Period size: 25 Copynumber: 2.8 Consensus size: 25
46731118 AACTAGAATT
46731128 AGAATCAGAATCAAAATCAGGTGA-C
1 AGAATCAGAATCAAAATCAGGT-ATC
*
46731153 AGAATCAGAATCAGAATCA-GTATC
1 AGAATCAGAATCAAAATCAGGTATC
46731177 AGGTAAT-AGAATCAAAATCAG
1 A-G-AATCAGAATCAAAATCAG
46731198 AATGTGAATG
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
23 1 0.03
24 4 0.10
25 31 0.79
26 3 0.08
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAAAATCAGGTATC
Found at i:46731163 original size:31 final size:31
Alignment explanation
Indices: 46731122--46731200 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
46731112 TATCAGAACT
* *
46731122 AGAATTAGAATCAGAATCAAAATCAGGTGAC
1 AGAATCAGAATCAGAATCAAAATCAGGTAAC
** *
46731153 AGAATCAGAATCAGAATCAGTATCAGGTAAT
1 AGAATCAGAATCAGAATCAAAATCAGGTAAC
*
46731184 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
46731201 GTGAATGCAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAAAATCAGGTAAC
Found at i:46731465 original size:27 final size:26
Alignment explanation
Indices: 46731417--46731468 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
46731407 GCGAGGCTGC
*
46731417 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
46731443 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
46731469 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:46731474 original size:67 final size:67
Alignment explanation
Indices: 46731379--46732224 Score: 1683
Period size: 67 Copynumber: 12.6 Consensus size: 67
46731369 GAACAGATAT
*
46731379 ATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
46731444 AG
66 AG
46731446 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
46731511 AG
66 AG
46731513 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
46731578 AG
66 AG
46731580 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
46731645 AG
66 AG
46731647 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
46731712 AG
66 AG
46731714 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
46731779 AG
66 AG
46731781 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
46731846 AG
66 AG
46731848 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
46731913 AG
66 AG
46731915 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
46731980 AG
66 AG
46731982 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
46732047 AG
66 AG
46732049 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
46732114 AG
66 AG
46732116 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
46732181 AG
66 AG
46732183 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGA
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGA
46732225 ACGCTTCCTC
Statistics
Matches: 778, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 778 1.00
ACGTcount: A:0.30, C:0.22, G:0.30, T:0.18
Consensus pattern (67 bp):
ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
AG
Found at i:46731532 original size:27 final size:26
Alignment explanation
Indices: 46731484--46731535 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
46731474 GCGAGGCTGC
*
46731484 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
46731510 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
46731536 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:46731599 original size:27 final size:26
Alignment explanation
Indices: 46731551--46731602 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
46731541 GCGAGGCTGC
*
46731551 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
46731577 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
46731603 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:46731666 original size:27 final size:26
Alignment explanation
Indices: 46731618--46731669 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
46731608 GCGAGGCTGC
*
46731618 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
46731644 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
46731670 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:46731733 original size:27 final size:26
Alignment explanation
Indices: 46731685--46731736 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
46731675 GCGAGGCTGC
*
46731685 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
46731711 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
46731737 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:46731800 original size:27 final size:26
Alignment explanation
Indices: 46731752--46731803 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
46731742 GCGAGGCTGC
*
46731752 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
46731778 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
46731804 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:46731867 original size:27 final size:26
Alignment explanation
Indices: 46731819--46731870 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
46731809 GCGAGGCTGC
*
46731819 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
46731845 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
46731871 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:46731934 original size:27 final size:26
Alignment explanation
Indices: 46731886--46731937 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
46731876 GCGAGGCTGC
*
46731886 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
46731912 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
46731938 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:46732001 original size:27 final size:26
Alignment explanation
Indices: 46731953--46732004 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
46731943 GCGAGGCTGC
*
46731953 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
46731979 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
46732005 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:46732068 original size:27 final size:26
Alignment explanation
Indices: 46732020--46732071 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
46732010 GCGAGGCTGC
*
46732020 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
46732046 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
46732072 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:46732135 original size:27 final size:26
Alignment explanation
Indices: 46732087--46732138 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
46732077 GCGAGGCTGC
*
46732087 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
46732113 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
46732139 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:46732202 original size:27 final size:26
Alignment explanation
Indices: 46732154--46732205 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
46732144 GCGAGGCTGC
*
46732154 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
46732180 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
46732206 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:46732479 original size:27 final size:27
Alignment explanation
Indices: 46732449--46732565 Score: 146
Period size: 27 Copynumber: 4.3 Consensus size: 27
46732439 AGGGTAAAAT
* *
46732449 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
46732476 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
46732503 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
46732530 GGT-ATTTCTACCCTACAAGGGTATTTT
1 GGTAATTT-TACCCTACAAGGGTATTTC
46732557 GGTAATTTT
1 GGTAATTTT
46732566 GTAAATTGAG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.04
27 70 0.91
28 4 0.05
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:46733164 original size:163 final size:163
Alignment explanation
Indices: 46732667--46733702 Score: 1571
Period size: 163 Copynumber: 6.4 Consensus size: 163
46732657 AGTATTTCAG
* * * * * *
46732667 TAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAA
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTATAA
* * * * * * *
46732732 ACCAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTA-TTTTGGTAATTTTATAAACAAAGGGTA
66 ACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTTGGTAATTTTGTAAACCAAGAGTA
* * *
46732796 TTTTAGTAATTTTACAAACCAGGGGTATTTTGG
131 TTTTGGTAATTTTACAAACTAGGGGTATTTTGA
** * * * * *
46732829 TAATTTTGTAAACCAAGAGTATTTTGGTAATTCTGTA-AA-TCAGGGGTACTTTGGTAATTTTAC
1 TAATTTTACAAACCAGGGGTATTTTGGTAATT-T-TACAAGCCAGGGGTATTTTGGTAATTTTAT
* * * * *** * ** *** * *
46732892 AAGTC-GAGGGTATTTCAATAATTTTACAGGTC-GAGAGTA-TTTCAGTAATTTCACAAATCAGG
64 AA-ACAAAGGGTATTTTAGTAATTTTACAAACCAG-GGGTATTTTTGGTAATTTTGTAAACCAAG
*
46732954 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGA
127 AGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGA
46732991 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTATAA
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTATAA
46733056 ACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTTGGTAATTTTGTAAACCAAGAGTA
66 ACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTTGGTAATTTTGTAAACCAAGAGTA
46733121 TTTTGGTAATTTTACAAACTAGGGGTATTTTGA
131 TTTTGGTAATTTTACAAACTAGGGGTATTTTGA
46733154 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTATAA
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTATAA
46733219 ACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTTGGTAATTTTGTAAACCAAGAGTA
66 ACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTTGGTAATTTTGTAAACCAAGAGTA
46733284 TTTTGGTAATTTTACAAACTAGGGGTATTTTGA
131 TTTTGGTAATTTTACAAACTAGGGGTATTTTGA
46733317 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTATAA
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTATAA
46733382 ACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTTGGTAATTTTGTAAACCAAGAGTA
66 ACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTTGGTAATTTTGTAAACCAAGAGTA
46733447 TTTTGGTAATTTTACAAACTAGGGGTATTTTGA
131 TTTTGGTAATTTTACAAACTAGGGGTATTTTGA
46733480 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTATAA
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTATAA
46733545 ACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTTGGTAATTTTGTAAACCAAGAGTA
66 ACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTTGGTAATTTTGTAAACCAAGAGTA
*
46733610 TTTTGGTAATTTTACAAACTAGGGGTATTTTGG
131 TTTTGGTAATTTTACAAACTAGGGGTATTTTGA
* * ** * * *
46733643 TGATTTTATAAACCAAAGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTAGTAATTT
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTT
46733703 GGTAAACTAA
Statistics
Matches: 805, Mismatches: 60, Indels: 17
0.91 0.07 0.02
Matches are distributed among these distances:
160 2 0.00
161 5 0.01
162 198 0.25
163 598 0.74
164 2 0.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (163 bp):
TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTATAA
ACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTTGGTAATTTTGTAAACCAAGAGTA
TTTTGGTAATTTTACAAACTAGGGGTATTTTGA
Found at i:46733709 original size:27 final size:27
Alignment explanation
Indices: 46732666--46733702 Score: 1142
Period size: 27 Copynumber: 38.3 Consensus size: 27
46732656 GAGTATTTCA
* * *
46732666 GTAATTTCACAAATCAGGGGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* *
46732693 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* *
46732720 ATAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* *
46732747 GTAATTTTACAAGCCAGGGGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* * *
46732774 GTAATTTTATAAACAAAGGGTATTTTA
1 GTAATTTTATAAACCAGGGGTATTTTG
*
46732801 GTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* * *
46732828 GTAATTTTGTAAACCAAGAGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* * * *
46732855 GTAATTCTGTAAATCAGGGGTACTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* ** **
46732882 GTAATTTTACAAGTC-GAGGGTATTTCA
1 GTAATTTTATAAACCAG-GGGTATTTTG
* * *** * **
46732909 ATAATTTTACAGGTC-GAGAGTATTTCA
1 GTAATTTTATAAACCAG-GGGTATTTTG
* * *
46732936 GTAATTTCACAAATCAGGGGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* *
46732963 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* *
46732990 ATAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* *
46733017 GTAATTTTACAAGCCAGGGGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* * *
46733044 GTAATTTTATAAACAAAGGGTATTTTA
1 GTAATTTTATAAACCAGGGGTATTTTG
*
46733071 GTAATTTTACAAACCAGGGGTATTTTTG
1 GTAATTTTATAAACCAGGGGTA-TTTTG
* * *
46733099 GTAATTTTGTAAACCAAGAGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* *
46733126 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* *
46733153 ATAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* *
46733180 GTAATTTTACAAGCCAGGGGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* * *
46733207 GTAATTTTATAAACAAAGGGTATTTTA
1 GTAATTTTATAAACCAGGGGTATTTTG
*
46733234 GTAATTTTACAAACCAGGGGTATTTTTG
1 GTAATTTTATAAACCAGGGGTA-TTTTG
* * *
46733262 GTAATTTTGTAAACCAAGAGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* *
46733289 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* *
46733316 ATAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* *
46733343 GTAATTTTACAAGCCAGGGGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* * *
46733370 GTAATTTTATAAACAAAGGGTATTTTA
1 GTAATTTTATAAACCAGGGGTATTTTG
*
46733397 GTAATTTTACAAACCAGGGGTATTTTTG
1 GTAATTTTATAAACCAGGGGTA-TTTTG
* * *
46733425 GTAATTTTGTAAACCAAGAGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* *
46733452 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* *
46733479 ATAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* *
46733506 GTAATTTTACAAGCCAGGGGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* * *
46733533 GTAATTTTATAAACAAAGGGTATTTTA
1 GTAATTTTATAAACCAGGGGTATTTTG
*
46733560 GTAATTTTACAAACCAGGGGTATTTTTG
1 GTAATTTTATAAACCAGGGGTA-TTTTG
* * *
46733588 GTAATTTTGTAAACCAAGAGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* *
46733615 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTATAAACCAGGGGTATTTTG
* ** *
46733642 GTGATTTTATAAACCAAAGGTATTTTA
1 GTAATTTTATAAACCAGGGGTATTTTG
* *
46733669 GTAATTTTACAAACCAGGGGTATTTTA
1 GTAATTTTATAAACCAGGGGTATTTTG
46733696 GTAATTT
1 GTAATTT
46733703 GGTAAACTAA
Statistics
Matches: 861, Mismatches: 143, Indels: 12
0.85 0.14 0.01
Matches are distributed among these distances:
26 1 0.00
27 771 0.90
28 89 0.10
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
GTAATTTTATAAACCAGGGGTATTTTG
Found at i:46739127 original size:68 final size:65
Alignment explanation
Indices: 46739011--46739262 Score: 203
Period size: 68 Copynumber: 3.8 Consensus size: 65
46739001 TACAGATGGT
** * * * *
46739011 ATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACGAGACA
1 ATGTAGCTAGGTCACATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGCTACGAG--A
46739074 TTATA
62 -TATA
* *
46739079 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT-
1 ATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATATA
* * * * * * *
46739143 ATGTAGTTAGGTCACATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCACATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
46739208 A-A
63 ATA
* * *
46739210 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
46739263 CGAACTATAT
Statistics
Matches: 150, Mismatches: 26, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
62 1 0.01
63 19 0.13
64 19 0.13
65 11 0.07
66 17 0.11
67 32 0.21
68 50 0.33
69 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.24
Consensus pattern (65 bp):
ATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATATA
Found at i:46747983 original size:26 final size:27
Alignment explanation
Indices: 46747928--46747987 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
46747918 GCGAGGCTGC
46747928 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGTCACCAGATA
* *
46747955 CAGATATTGTGGC-TAGTCCACCAGA-A
1 CAGATATTGTGACGAAGT-CACCAGATA
46747981 CAGATAT
1 CAGATAT
46747988 ATATATGTGG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
26 11 0.37
27 19 0.63
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (27 bp):
CAGATATTGTGACGAAGTCACCAGATA
Found at i:46748074 original size:27 final size:26
Alignment explanation
Indices: 46748026--46748077 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
46748016 GCGAGGCTGC
*
46748026 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
46748052 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
46748078 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:46748325 original size:27 final size:27
Alignment explanation
Indices: 46748295--46748519 Score: 276
Period size: 27 Copynumber: 8.3 Consensus size: 27
46748285 AGGGCAAAAT
* *
46748295 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
46748322 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
46748349 AGTAATTCTACCATACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
46748376 AGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * *
46748403 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
46748430 AGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
46748457 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
46748484 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
46748511 GGCAATTTT
1 GGTAATTTT
46748520 GTAAATCGAG
Statistics
Matches: 175, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
26 7 0.04
27 161 0.92
28 7 0.04
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:46748385 original size:54 final size:54
Alignment explanation
Indices: 46748295--46748517 Score: 304
Period size: 54 Copynumber: 4.1 Consensus size: 54
46748285 AGGGCAAAAT
* * * * * *
46748295 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
* *
46748349 AGTAATTCTACCATACAAGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
* * *
46748403 GGTAATTCTACCCTACAGGGGTATTTTAGTAATTT-TACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGT-ATTTCTACCCTACAAGGGTATTTC
* *
46748457 GGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
*
46748511 GGCAATT
1 GGTAATT
46748518 TTGTAAATCG
Statistics
Matches: 147, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
53 4 0.03
54 139 0.95
55 4 0.03
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
Found at i:46748518 original size:81 final size:81
Alignment explanation
Indices: 46748299--46748519 Score: 336
Period size: 81 Copynumber: 2.7 Consensus size: 81
46748289 CAAAATGGTA
* * *
46748299 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCAT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACCAT
46748363 ACAAGGGTATTTCAGT
66 ACAAGGGTATTTCAGT
* *
46748379 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTTTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACCAT
* *
46748444 ACAGGGGTATTTCGGT
66 ACAAGGGTATTTCAGT
* * * *
46748460 ATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGCAATTTT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTT
46748520 GTAAATCGAG
Statistics
Matches: 128, Mismatches: 12, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
80 4 0.03
81 124 0.97
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACCAT
ACAAGGGTATTTCAGT
Found at i:46748586 original size:81 final size:81
Alignment explanation
Indices: 46748501--46748658 Score: 190
Period size: 81 Copynumber: 2.0 Consensus size: 81
46748491 CTACCCTACA
** ** * *
46748501 AGGGTATTTCGGCAATTTTGTAAATCGAGGGTAAAACGGTAATTCCATAAATCAGGGGTACTTTG
1 AGGGTATTTCAACAATTTTACAAATCGAGGGTAAAACAGTAATTCCACAAATCAGGGGTACTTTG
46748566 GTAATTTTACAAGTCG
66 GTAATTTTACAAGTCG
* ** *** * *
46748582 AGGGTATTTCAATAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTG
1 AGGGTATTTCAACAATTTTACAAATCGAGGGTAAAACAGTAATTCCACAAATCAGGGGTACTTTG
46748647 GTAATTTTACAA
66 GTAATTTTACAA
46748659 ACTAGGGGTA
Statistics
Matches: 63, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
81 63 1.00
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (81 bp):
AGGGTATTTCAACAATTTTACAAATCGAGGGTAAAACAGTAATTCCACAAATCAGGGGTACTTTG
GTAATTTTACAAGTCG
Found at i:46748833 original size:109 final size:109
Alignment explanation
Indices: 46748637--46748913 Score: 407
Period size: 109 Copynumber: 2.6 Consensus size: 109
46748627 CACAAATCAG
* * * ** * *
46748637 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGAGTATTTTGG
*
46748702 TAATTTTACAAGCCAGGGGTATTTTGGTAATTTTATAAA-CAAA
66 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAA
46748745 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTTGGTAATTTTGTAAACCAAGAGTATTTTG
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTA-TTTTGGTAATTTTGTAAACCAAGAGTATTTTG
* *
46748810 GTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAA
65 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAA
* * *
46748855 -GGTATTTTAGTAATTTTACAAACCAGAGGTATTTTGGTAATTTGGTAAACTAA-AGTATT
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGAGTATT
46748914 CTAAACAGGA
Statistics
Matches: 154, Mismatches: 13, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
107 6 0.04
108 50 0.32
109 94 0.61
110 4 0.03
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (109 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGAGTATTTTGG
TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAA
Found at i:46748904 original size:27 final size:27
Alignment explanation
Indices: 46748553--46748897 Score: 370
Period size: 27 Copynumber: 12.7 Consensus size: 27
46748543 TTCCATAAAT
* **
46748553 CAGGGGTACTTTGGTAATTTTACAAGT
1 CAGGGGTATTTTGGTAATTTTACAAAC
*** ***
46748580 C-GAGGGTATTTCAATAATTTTACAGGT
1 CAG-GGGTATTTTGGTAATTTTACAAAC
** * *
46748607 C-GAGGGTATTTCAGTAATTTCACAAAT
1 CAG-GGGTATTTTGGTAATTTTACAAAC
46748634 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* *
46748661 TAGGGGTATTTTGATAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
46748688 CAGGGGTATTTTGGTAATTTTACAAGC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
46748715 CAGGGGTATTTTGGTAATTTTATAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* * *
46748742 AAAGGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
**
46748769 CAGGGGTATTTTTGGTAATTTTGTAAAC
1 CAGGGGTA-TTTTGGTAATTTTACAAAC
* *
46748797 CAAGAGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* * *
46748824 TAGGGGTATTTTGGTGATTTTATAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
** *
46748851 CAAAGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
46748878 CAGAGGTATTTTGGTAATTT
1 CAGGGGTATTTTGGTAATTT
46748898 GGTAAACTAA
Statistics
Matches: 269, Mismatches: 46, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.00
27 245 0.91
28 23 0.09
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:46749530 original size:35 final size:36
Alignment explanation
Indices: 46749474--46749599 Score: 184
Period size: 35 Copynumber: 3.5 Consensus size: 36
46749464 AATCATATCT
46749474 TCTAAGATTGCATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGC-TATCATATCTAAGATTGCAATCATA
46749511 TCTAAGATTG-TATCATATCTAAGATTGCATATCATA
1 TCTAAGATTGCTATCATATCTAAGATTGCA-ATCATA
* * *
46749547 TCTATGATTGCAATCATATCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATATCTAAGATTGCAATCATA
46749582 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
46749600 TGAAGATTAT
Statistics
Matches: 81, Mismatches: 5, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
35 35 0.43
36 20 0.25
37 26 0.32
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (36 bp):
TCTAAGATTGCTATCATATCTAAGATTGCAATCATA
Found at i:46749540 original size:54 final size:54
Alignment explanation
Indices: 46749474--46749599 Score: 243
Period size: 54 Copynumber: 2.3 Consensus size: 54
46749464 AATCATATCT
46749474 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
*
46749528 TCTAAGATTGCATATCATATCTATGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
46749582 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
46749600 TGAAGATTAT
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
54 71 1.00
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
Found at i:46749543 original size:14 final size:15
Alignment explanation
Indices: 46749488--46749597 Score: 78
Period size: 17 Copynumber: 6.5 Consensus size: 15
46749478 AGATTGCATA
46749488 TCATATCTAAGATTG
1 TCATATCTAAGATTG
46749503 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
46749521 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
*
46749538 CATATCATATCTATGATTG
1 ----TCATATCTAAGATTG
46749557 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
46749575 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
46749592 -CATATC
1 TCATATC
46749598 ATTGAAGATT
Statistics
Matches: 84, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
14 6 0.07
17 32 0.38
18 30 0.36
19 16 0.19
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:46749607 original size:17 final size:19
Alignment explanation
Indices: 46749474--46749599 Score: 201
Period size: 19 Copynumber: 6.9 Consensus size: 19
46749464 AATCATATCT
46749474 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
46749493 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
46749511 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
46749528 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
46749547 TCTATGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
46749565 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
46749582 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
46749600 TGAAGATTAT
Statistics
Matches: 99, Mismatches: 2, Indels: 12
0.88 0.02 0.11
Matches are distributed among these distances:
17 32 0.32
18 31 0.31
19 36 0.36
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:46749713 original size:23 final size:22
Alignment explanation
Indices: 46749672--46749714 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
46749662 CTTGGACTTC
**
46749672 ATTTTTTTTTTGGGTTTATTAT
1 ATTTTTTTTTTGGACTTATTAT
46749694 ATTTTTGTTTTTGGACTTATT
1 ATTTTT-TTTTTGGACTTATT
46749715 TTTGGGCCCG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.14, C:0.02, G:0.14, T:0.70
Consensus pattern (22 bp):
ATTTTTTTTTTGGACTTATTAT
Found at i:46751099 original size:132 final size:132
Alignment explanation
Indices: 46750916--46751269 Score: 530
Period size: 132 Copynumber: 2.7 Consensus size: 132
46750906 CATAGATGTN
* * *
46750916 TCGACTTCCTGAGGTTGTAGTGAAGCATATTTAAGTCACTAACCTAACTCCCTAAAGTTGTAGTG
1 TCGACTTCCTGAGGTTGCAGTGAAGCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTG
*
46750981 GAGTAGGTTGAAATTTTAGATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGACGAA
66 GAGTAGGTTGAAATTTTAGATCTCGTTTCCCCGAAGTTGCAGTGGAGCAGATCGAAGACGACGAA
46751046 TC
131 TC
*
46751048 TCGACTTCCTGAGGTTACAGTGAAGCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTG
1 TCGACTTCCTGAGGTTGCAGTGAAGCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTG
* * * *
46751113 GAGTAGGTTGAAATTTTAGATCTCGTTTCCCCGAAGTTGCAGTGGAGCAGATTGAATATGATGAA
66 GAGTAGGTTGAAATTTTAGATCTCGTTTCCCCGAAGTTGCAGTGGAGCAGATCGAAGACGACGAA
46751178 TC
131 TC
* * * * *
46751180 TTGACTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCA-TCACCCTAGATCCCTAAAGTTGTAGT
1 TCGACTTCCTGAGGTTGCAGTGAAGCAGATTTAAGTCACT-AACCTAGCTCCCTAAAGTTGTAGT
* **
46751244 GGAGTAGGCTGACAATTGCAGATCTC
65 GGAGTAGGTTGA-AATTTTAGATCTC
46751270 ATCTCCAGTG
Statistics
Matches: 202, Mismatches: 18, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
131 1 0.00
132 190 0.94
133 11 0.05
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (132 bp):
TCGACTTCCTGAGGTTGCAGTGAAGCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTG
GAGTAGGTTGAAATTTTAGATCTCGTTTCCCCGAAGTTGCAGTGGAGCAGATCGAAGACGACGAA
TC
Found at i:46758053 original size:52 final size:51
Alignment explanation
Indices: 46757972--46758074 Score: 179
Period size: 52 Copynumber: 2.0 Consensus size: 51
46757962 AAACTTTAGC
46757972 GGTTCAGGCAGACACACTAAGCGTAAAATATGAGTTGGAGTCGGAGCGCGG
1 GGTTCAGGCAGACACACTAAGCGTAAAATATGAGTTGGAGTCGGAGCGCGG
* *
46758023 NGGTTCAGGCAGACACATTAAGCGTGAAATATGAGTTGGAGTCGGAGCGCGG
1 -GGTTCAGGCAGACACACTAAGCGTAAAATATGAGTTGGAGTCGGAGCGCGG
46758075 ACAAGAGCTG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.28, C:0.17, G:0.36, T:0.18
Consensus pattern (51 bp):
GGTTCAGGCAGACACACTAAGCGTAAAATATGAGTTGGAGTCGGAGCGCGG
Found at i:46768319 original size:73 final size:74
Alignment explanation
Indices: 46768199--46768345 Score: 269
Period size: 73 Copynumber: 2.0 Consensus size: 74
46768189 TTAGTCAAAC
46768199 AGTGAAACAGGGGAAACTTTAAGAAAAATCTGGTATTCATTGGCCAAACCTAAAATTCTGAAAAT
1 AGTGAAACAGGGGAAACTTTAAGAAAAATCTGGTATTCATTGGCCAAACCTAAAATTCTGAAAAT
46768264 TTTATGGAT
66 TTTATGGAT
* *
46768273 AGTGAAACAGGGGAAA-TTTAAGAAAAATCTGGTATTGATTGGCCAAACCTAAAATTCTGGAAAT
1 AGTGAAACAGGGGAAACTTTAAGAAAAATCTGGTATTCATTGGCCAAACCTAAAATTCTGAAAAT
46768337 TTTATGGAT
66 TTTATGGAT
46768346 GGAAGATATA
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
73 55 0.77
74 16 0.23
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.29
Consensus pattern (74 bp):
AGTGAAACAGGGGAAACTTTAAGAAAAATCTGGTATTCATTGGCCAAACCTAAAATTCTGAAAAT
TTTATGGAT
Found at i:46768796 original size:47 final size:47
Alignment explanation
Indices: 46768745--46769233 Score: 753
Period size: 47 Copynumber: 10.3 Consensus size: 47
46768735 TACATGATAG
* *
46768745 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
* *
46768794 TATATGTGATAAGGCCTAATGGCTGATGTGATGAAGGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
46768841 TATATGTGATAAGGCCTAAGGGCCGATGTGATGAATGTGAAAGTGCA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
46768888 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
*
46768937 TATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
46768984 TATATGTGATAAGGCCTAATAGCCGATGTGTTGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
46769033 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
46769080 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
46769127 TATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * * * * *
46769174 TATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
46769221 TAAATGTGATAAG
1 TATATGTGATAAG
46769234 TCCCGAAGGG
Statistics
Matches: 406, Mismatches: 30, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
47 275 0.68
49 131 0.32
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:46768870 original size:96 final size:94
Alignment explanation
Indices: 46768745--46769233 Score: 753
Period size: 96 Copynumber: 5.1 Consensus size: 94
46768735 TACATGATAG
* *
46768745 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
* *
46768810 TAATGGCTGATGTGATGAAGGTGAAAGTGTA
64 TAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
46768841 TATATGTGATAAGGCCTAAGGGCCGATGTGATGAATGTGAAAGTGCATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
46768906 ATGGCCGATGTGATGAATGTGAAAGTGTATA
66 ATGGCCGATGTGATGAATGTGAAAGTG--TA
*
46768937 TATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
* *
46769002 ATAGCCGATGTGTTGAATGTGAAAGTGTATA
66 ATGGCCGATGTGATGAATGTGAAAGTG--TA
46769033 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
*
46769098 ATAGCCGATGTGATGAATGTGAAAGTGTA
66 ATGGCCGATGTGATGAATGTGAAAGTGTA
* * * *
46769127 TATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
* * * *
46769192 GTGGCCAACGTGATGGATGTGAAAGTGTA
66 ATGGCCGATGTGATGAATGTGAAAGTGTA
*
46769221 TAAATGTGATAAG
1 TATATGTGATAAG
46769234 TCCCGAAGGG
Statistics
Matches: 367, Mismatches: 24, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
94 142 0.39
96 225 0.61
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
ATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:46769009 original size:143 final size:143
Alignment explanation
Indices: 46768745--46769233 Score: 779
Period size: 143 Copynumber: 3.4 Consensus size: 143
46768735 TACATGATAG
46768745 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* *
46768810 TAATGGCTGATGTGATGAAGGTGAAAGTGTATATATGTGATAAGGCCTAAGGGCCGATGTGATGA
66 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
46768875 ATGTGAAAGTGCA
131 ATGTGAAAGTGTA
* *
46768888 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* *
46768953 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGTTGA
66 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
46769018 ATGTGAAAGTGTATA
131 ATGTGAAAGTG--TA
* *
46769033 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* * *
46769096 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
66 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
46769161 ATGTGAAAGTGTA
131 ATGTGAAAGTGTA
* * * * *
46769174 TATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
46769234 TCCCGAAGGG
Statistics
Matches: 323, Mismatches: 19, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
141 50 0.15
142 1 0.00
143 226 0.70
145 46 0.14
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (143 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
TAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTA
Found at i:46771303 original size:44 final size:44
Alignment explanation
Indices: 46770998--46771280 Score: 449
Period size: 44 Copynumber: 6.4 Consensus size: 44
46770988 GGCGAATCCT
46770998 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
* * *
46771042 GCAGATTTTGCATCTCTGTATTGGCAGAGGGCAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
* ** *
46771086 GCAAATTTGGTGTCTCTGTATTGGCGAAGAGCAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
*
46771130 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGGTCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
* *
46771174 GCAGATTTGGAATCTCTGTATTGGCGGAGAGCAGATCGAAGATT
1 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
* * *
46771218 CCAGATTTGGCGTCTCTGTATTGGCGAAGAGCAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
46771262 GCAGATTTGGCATCTCTGT
1 GCAGATTTGGCATCTCTGT
46771281 GTTGACAAAG
Statistics
Matches: 214, Mismatches: 25, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 214 1.00
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.27
Consensus pattern (44 bp):
GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
Found at i:46773260 original size:130 final size:130
Alignment explanation
Indices: 46773026--46773264 Score: 309
Period size: 130 Copynumber: 1.8 Consensus size: 130
46773016 AAAATACTTA
* *
46773026 AAAATGAAGACGATGTTCAATGTTTGGCGATTTGAGAACCGTGCCCTATCGTGCTGGGTTGCGTT
1 AAAATGAAGACGATGTTCAATGTTTGGCGATTTGAGAACCGAGCCCTATCGTGCTGGGTTGCGCT
* * * * **
46773091 TTTTCATTGGTTCGAAACAATTGAACATCCCTTTGGAATTTCACTCACATTTTCTAAAATCTTTC
66 TTTTCATTGCTCCAAAACAATCGAACATCCCTTCAGAATTTCACTCACATTTTCTAAAATCTTTC
** * * *
46773156 AAAATGAAGGTGATGTTCGATGTTTGGCGATTTGAGAATCGAGCCCTATCGTGTTGGGTTGCGCT
1 AAAATGAAGACGATGTTCAATGTTTGGCGATTTGAGAACCGAGCCCTATCGTGCTGGGTTGCGCT
* ** *
46773221 TTTTCATTTCTCCAAAATGATCGAATATCTCC-TCAGAATTTCAC
66 TTTTCATTGCTCCAAAACAATCGAACATC-CCTTCAGAATTTCAC
46773265 ACGTATTTTA
Statistics
Matches: 91, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
130 89 0.98
131 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.36
Consensus pattern (130 bp):
AAAATGAAGACGATGTTCAATGTTTGGCGATTTGAGAACCGAGCCCTATCGTGCTGGGTTGCGCT
TTTTCATTGCTCCAAAACAATCGAACATCCCTTCAGAATTTCACTCACATTTTCTAAAATCTTTC
Found at i:46774629 original size:23 final size:25
Alignment explanation
Indices: 46774585--46774631 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 25
46774575 TATATTATTA
*
46774585 GGGGGTTATATATAATATATATAAG
1 GGGGGTTATATATAATACATATAAG
*
46774610 GGGGGTTGTA-AT-ATACATATAA
1 GGGGGTTATATATAATACATATAA
46774632 ATGTGTTTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 2 0.10
25 9 0.45
ACGTcount: A:0.38, C:0.02, G:0.26, T:0.34
Consensus pattern (25 bp):
GGGGGTTATATATAATACATATAAG
Found at i:46775807 original size:23 final size:23
Alignment explanation
Indices: 46775764--46775808 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
46775754 CACAGGCTGG
* *
46775764 CACATGGGCGTGTGGCTAGCCCT
1 CACACGGGCGTCTGGCTAGCCCT
46775787 CACACGGGCGTCT-GCTCAGCCC
1 CACACGGGCGTCTGGCT-AGCCC
46775809 GTGGGAATGG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.13, C:0.38, G:0.31, T:0.18
Consensus pattern (23 bp):
CACACGGGCGTCTGGCTAGCCCT
Found at i:46777645 original size:18 final size:19
Alignment explanation
Indices: 46777622--46777667 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
46777612 CTCTAGGAAA
46777622 AAAAATAAATAG-AAAAAT
1 AAAAATAAATAGTAAAAAT
*
46777640 AAAAATAATTAGTAAAAAT
1 AAAAATAAATAGTAAAAAT
46777659 AAAAATAAA
1 AAAAATAAA
46777668 AATAAATGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 11 0.44
19 14 0.56
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (19 bp):
AAAAATAAATAGTAAAAAT
Found at i:46777662 original size:5 final size:6
Alignment explanation
Indices: 46777622--46777673 Score: 59
Period size: 6 Copynumber: 8.5 Consensus size: 6
46777612 CTCTAGGAAA
* * * *
46777622 AAAAAT AAATAG AAAAAT AAAAAT AATTAGT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AA-AAAT AAAAAT AAAAAT AAAAAT
46777671 AAA
1 AAA
46777674 TGGACTCAAT
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
6 33 0.89
7 4 0.11
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (6 bp):
AAAAAT
Found at i:46780241 original size:30 final size:30
Alignment explanation
Indices: 46780205--46780265 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
46780195 AAAGGGCTAG
* *
46780205 CACATGGGCGTGTGGCCTGCCCATGTGGAT
1 CACATGGGCGTGTGCCCAGCCCATGTGGAT
*
46780235 CACATGGGCGTGTGCCCAGGCCATGTGGAT
1 CACATGGGCGTGTGCCCAGCCCATGTGGAT
46780265 C
1 C
46780266 CTAAAAAGTC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.21
Consensus pattern (30 bp):
CACATGGGCGTGTGCCCAGCCCATGTGGAT
Found at i:46783484 original size:90 final size:90
Alignment explanation
Indices: 46783368--46783934 Score: 776
Period size: 90 Copynumber: 6.4 Consensus size: 90
46783358 TAATAACCTT
* * *
46783368 GATCTGCTCCCCGTCAAATACAGAGACGCCAAATCTG-CTATCTTCGATTTGCTTTGATGTAAAC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTTCGATGTAAAC
*
46783432 ATACGAATGTCAGATCTGCTATCTTC
65 ACACGAATGTCAGATCTGCTATCTTC
* * * * * *
46783458 GATCTACTTCCCGTCTAATACAGAGACGCCAAATCTGTCATTTTCAATCTACTTTGATGT---CA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
46783520 -AC--A---CAGATCTGCTATCTTC
66 CACGAATGTCAGATCTGCTATCTTC
* *
46783539 GATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTATCATCTTCGATCTGCTTCGATGTAAACA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
*
46783604 CACGAATGTCAGATCTGCTATATTC
66 CACGAATGTCAGATCTGCTATCTTC
* *
46783629 GATCTGCTCCCCGTCTAATACGGAGACGCCAAATCTGTCATCTTCAATCTGCTTCGATGTAAACA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
46783694 CACGAATGTCAGATCTGCTATCTTC
66 CACGAATGTCAGATCTGCTATCTTC
** *
46783719 GATCTGCTCCCCGTCTAATATGGAGACGCCAAATCTGTCATCTTCTATCTGCTTCGATGTAAACA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
* *
46783784 CACGAATGTCAGATCTACTATCTTT
66 CACGAATGTCAGATCTGCTATCTTC
* ** * *
46783809 GATCTGCTCCCCATCTAATATGGAGACGCCAAATCTGTCATATTCGATCTGATTCGATGTAAACA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
* * *
46783874 CATGAATATCAGATCTTCTATCTTC
66 CACGAATGTCAGATCTGCTATCTTC
* * *
46783899 GATCTACTCCCCGCCTAATACAGAGATGCCAAATCT
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCT
46783935 ACTTCTTCGA
Statistics
Matches: 428, Mismatches: 39, Indels: 20
0.88 0.08 0.04
Matches are distributed among these distances:
81 68 0.16
84 3 0.01
85 2 0.00
86 2 0.00
87 3 0.01
90 349 0.82
91 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (90 bp):
GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
CACGAATGTCAGATCTGCTATCTTC
Found at i:46783494 original size:45 final size:45
Alignment explanation
Indices: 46783368--46783984 Score: 245
Period size: 45 Copynumber: 14.0 Consensus size: 45
46783358 TAATAACCTT
* * *
46783368 GATCTGCTCCCCGTCAAATACAGAGACGCCAAATCTGCTATCTTC
1 GATCTGCTTCCCGTCTAATACAGAGATGCCAAATCTGCTATCTTC
* * * * * *
46783413 GATTTGCTT--TGATGTAA-ACATACGAATGTCAGATCTGCTATCTTC
1 GATCTGCTTCCCG-TCTAATACAGA-G-ATGCCAAATCTGCTATCTTC
* * *
46783458 GATCTACTTCCCGTCTAATACAGAGACGCCAAATCTG-TCATTTTC
1 GATCTGCTTCCCGTCTAATACAGAGATGCCAAATCTGCT-ATCTTC
* * * * * * *
46783503 AATCTACTT--TG-AT-GT-CA-ACA---CAGATCTGCTATCTTC
1 GATCTGCTTCCCGTCTAATACAGAGATGCCAAATCTGCTATCTTC
* *
46783539 GATCTGCTCCCCGTCTAATACAGAGATGCCAAATCT-ATCATCTTC
1 GATCTGCTTCCCGTCTAATACAGAGATGCCAAATCTGCT-ATCTTC
* * * * *
46783584 GATCTGCTT--CGATGTAA-ACACACGAATGTCAGATCTGCTATATTC
1 GATCTGCTTCCCG-TCTAATACAGA-G-ATGCCAAATCTGCTATCTTC
* * *
46783629 GATCTGCTCCCCGTCTAATACGGAGACGCCAAATCTG-TCATCTTC
1 GATCTGCTTCCCGTCTAATACAGAGATGCCAAATCTGCT-ATCTTC
* * * * *
46783674 AATCTGCTT--CGATGTAA-ACACACGAATGTCAGATCTGCTATCTTC
1 GATCTGCTTCCCG-TCTAATACAGA-G-ATGCCAAATCTGCTATCTTC
* ** *
46783719 GATCTGCTCCCCGTCTAATATGGAGACGCCAAATCTG-TCATCTTC
1 GATCTGCTTCCCGTCTAATACAGAGATGCCAAATCTGCT-ATCTTC
* * * * * * *
46783764 TATCTGCTT--CGATGTAA-ACACACGAATGTCAGATCTACTATCTTT
1 GATCTGCTTCCCG-TCTAATACAGA-G-ATGCCAAATCTGCTATCTTC
* * ** * *
46783809 GATCTGCTCCCCATCTAATATGGAGACGCCAAATCTG-TCATATTC
1 GATCTGCTTCCCGTCTAATACAGAGATGCCAAATCTGCT-ATCTTC
* * * ** * *
46783854 GATCTGATT--CGATGTAA-ACACATGAATATCAGATCTTCTATCTTC
1 GATCTGCTTCCCG-TCTAATACAGA-G-ATGCCAAATCTGCTATCTTC
* * * *
46783899 GATCTACTCCCCGCCTAATACAGAGATGCCAAATCTACT-TCTTC
1 GATCTGCTTCCCGTCTAATACAGAGATGCCAAATCTGCTATCTTC
* *
46783943 GATTTG-TTCCCTGTC-AATATAGAGATGCCAAATCTGCTATCT
1 GATCTGCTTCCC-GTCTAATACAGAGATGCCAAATCTGCTATCT
46783985 ACATTGTCCC
Statistics
Matches: 402, Mismatches: 119, Indels: 103
0.64 0.19 0.17
Matches are distributed among these distances:
36 18 0.04
37 1 0.00
38 1 0.00
39 3 0.01
40 3 0.01
41 3 0.01
42 3 0.01
43 49 0.12
44 43 0.11
45 227 0.56
46 28 0.07
47 23 0.06
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (45 bp):
GATCTGCTTCCCGTCTAATACAGAGATGCCAAATCTGCTATCTTC
Found at i:46796034 original size:5 final size:5
Alignment explanation
Indices: 46796014--46796119 Score: 81
Period size: 5 Copynumber: 20.6 Consensus size: 5
46796004 AAAATTATAC
* * * *
46796014 ATAAT AAAAA ATAAT ATAAT ATAAT ATAAT ATAAT ATAAAA ATAAC ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT AT-AAT ATAAT ATAAT
* * *
46796065 GAATAAT ATATAT AGTAAA ATGAT ATAAT ATAAT AAAAT AT-AT A-AAT
1 --ATAAT ATA-AT A-TAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
*
46796112 AAAAT ATA
1 ATAAT ATA
46796120 TAATGAATTA
Statistics
Matches: 80, Mismatches: 14, Indels: 14
0.74 0.13 0.13
Matches are distributed among these distances:
4 6 0.08
5 58 0.73
6 9 0.11
7 7 0.09
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (5 bp):
ATAAT
Found at i:46796120 original size:15 final size:16
Alignment explanation
Indices: 46796003--46796121 Score: 83
Period size: 15 Copynumber: 7.7 Consensus size: 16
46795993 TACAAATTTT
*
46796003 TAAAAT-TATACATAA
1 TAAAATATATATATAA
*
46796018 TAAAAAATA-ATATAA
1 TAAAATATATATATAA
*
46796033 TATAATATA-ATATAA
1 TAAAATATATATATAA
* *
46796048 TATAAAAATA-ACATAA
1 TA-AAATATATATATAA
* *
46796064 T-GAATAATATATATAG
1 TAAAAT-ATATATATAA
46796080 TAAAATGATATAATATAA
1 TAAAAT-ATAT-ATATAA
46796098 T-AAA-ATATATA-AA
1 TAAAATATATATATAA
46796111 TAAAATATATA
1 TAAAATATATA
46796122 ATGAATTAAT
Statistics
Matches: 82, Mismatches: 14, Indels: 16
0.73 0.12 0.14
Matches are distributed among these distances:
13 3 0.04
14 8 0.10
15 37 0.45
16 18 0.22
17 10 0.12
18 6 0.07
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.33
Consensus pattern (16 bp):
TAAAATATATATATAA
Found at i:46796123 original size:30 final size:29
Alignment explanation
Indices: 46796003--46796115 Score: 111
Period size: 31 Copynumber: 3.7 Consensus size: 29
46795993 TACAAATTTT
*
46796003 TAAAATTATACATAATAAAAAATAATATAA
1 TAAAA-TATATATAATAAAAAATAATATAA
* *
46796033 TATAATATAATATAATATAAAAATAACATAA
1 TAAAATAT-ATATAATA-AAAAATAATATAA
*
46796064 TGAATAATATATATAGTAAAATGATATAATATAA
1 T-AA-AATATATATAATAAAA--A-ATAATATAA
46796098 TAAAATATATA-AATAAAA
1 TAAAATATATATAATAAAA
46796116 TATATAATGA
Statistics
Matches: 69, Mismatches: 7, Indels: 13
0.78 0.08 0.15
Matches are distributed among these distances:
29 3 0.04
30 11 0.16
31 22 0.32
32 16 0.23
33 8 0.12
34 9 0.13
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.32
Consensus pattern (29 bp):
TAAAATATATATAATAAAAAATAATATAA
Found at i:46798014 original size:3 final size:3
Alignment explanation
Indices: 46798006--46798035 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
46797996 AAAAAGAAAG
46798006 ATA ATA ATA ATA ATA ATA A-A ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
46798036 AAAACTCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:46798030 original size:11 final size:11
Alignment explanation
Indices: 46798006--46798037 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
46797996 AAAAAGAAAG
46798006 ATAATAATAATA
1 ATAATAA-AATA
46798018 ATAATAAAATA
1 ATAATAAAATA
46798029 ATAATAAAA
1 ATAATAAAA
46798038 AACTCAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.65
12 7 0.35
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
ATAATAAAATA
Found at i:46798030 original size:14 final size:14
Alignment explanation
Indices: 46798006--46798039 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
46797996 AAAAAGAAAG
46798006 ATAATAATAATAATA
1 ATAA-AATAATAATA
46798021 ATAAAATAATAATA
1 ATAAAATAATAATA
46798035 A-AAAA
1 ATAAAA
46798040 CTCAATGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 4 0.21
14 11 0.58
15 4 0.21
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
ATAAAATAATAATA
Found at i:46798125 original size:18 final size:17
Alignment explanation
Indices: 46798085--46798173 Score: 54
Period size: 18 Copynumber: 5.1 Consensus size: 17
46798075 ATGATAATAG
* *
46798085 TAAAAAAAATATGAAAGA
1 TAAAAAAAAAAT-AAAAA
*
46798103 GAAAAGAAAAAATAAAAA
1 TAAAA-AAAAAATAAAAA
* *
46798121 TAAAAATAAAATTAGAAA
1 TAAAAA-AAAAATAAAAA
* ***
46798139 TAATAAAAAAATATGTA
1 TAAAAAAAAAATAAAAA
*
46798156 TAAAAAAATAA-AAAAA
1 TAAAAAAAAAATAAAAA
46798172 TA
1 TA
46798174 TAAGTATAAG
Statistics
Matches: 53, Mismatches: 16, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
16 4 0.08
17 17 0.32
18 26 0.49
19 6 0.11
ACGTcount: A:0.75, C:0.00, G:0.07, T:0.18
Consensus pattern (17 bp):
TAAAAAAAAAATAAAAA
Found at i:46798170 original size:7 final size:6
Alignment explanation
Indices: 46798110--46798151 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
46798100 AGAGAAAAGA
* * *
46798110 AAAAAT AAAAAT AAAAAT AAAATT AGAAAT AATAA- AAAAAT A
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT A
46798152 TGTATAAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
5 4 0.14
6 25 0.86
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (6 bp):
AAAAAT
Found at i:46798170 original size:24 final size:25
Alignment explanation
Indices: 46798136--46798182 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
46798126 ATAAAATTAG
*
46798136 AAATAATAAAAAAATATGTATAAAA
1 AAATAATAAAAAAATAAGTATAAAA
*
46798161 AAATAA-AAAAATATAAGTATAA
1 AAATAATAAAAAAATAAGTATAA
46798183 GATTAATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.23
Consensus pattern (25 bp):
AAATAATAAAAAAATAAGTATAAAA
Found at i:46798193 original size:4 final size:4
Alignment explanation
Indices: 46798184--46798211 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
46798174 TAAGTATAAG
46798184 ATTA ATTA ATTA ATTA ATTA ATTA ATTA
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA
46798212 GTAAAATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
ATTA
Found at i:46798231 original size:22 final size:20
Alignment explanation
Indices: 46798213--46798264 Score: 77
Period size: 22 Copynumber: 2.5 Consensus size: 20
46798203 AATTAATTAG
46798213 TAAAATAAAAATAAATAATA
1 TAAAATAAAAATAAATAATA
*
46798233 TAACAATTAAAAATAAATAAAA
1 TAA-AA-TAAAAATAAATAATA
46798255 TAAAATAAAA
1 TAAAATAAAA
46798265 TTGGGGTGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 8 0.28
21 4 0.14
22 17 0.59
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (20 bp):
TAAAATAAAAATAAATAATA
Found at i:46798348 original size:30 final size:30
Alignment explanation
Indices: 46798314--46798415 Score: 186
Period size: 30 Copynumber: 3.4 Consensus size: 30
46798304 GCTCGTGTGT
46798314 CCAGGCCGTGTGGGTCACAAGGCCATGTCG
1 CCAGGCCGTGTGGGTCACAAGGCCATGTCG
*
46798344 CCAGGCCGTGTGGGTTACAAGGCCATGTCG
1 CCAGGCCGTGTGGGTCACAAGGCCATGTCG
*
46798374 CCAGGCCGTGTGGGTCACAAGGCAATGTCG
1 CCAGGCCGTGTGGGTCACAAGGCCATGTCG
46798404 CCAGGCCGTGTG
1 CCAGGCCGTGTG
46798416 TGTTTTCCTT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 69 1.00
ACGTcount: A:0.17, C:0.28, G:0.37, T:0.18
Consensus pattern (30 bp):
CCAGGCCGTGTGGGTCACAAGGCCATGTCG
Found at i:46803077 original size:45 final size:45
Alignment explanation
Indices: 46803013--46803234 Score: 213
Period size: 45 Copynumber: 5.0 Consensus size: 45
46803003 AGGACTATGC
46803013 TATGTGTTTTCGTGTAAGACCATGTCTGAGACATTGGCATCGATA
1 TATGTGTTTTCGTGTAAGACCATGTCTGAGACATTGGCATCGATA
* * * * *
46803058 TATGTGTTTTCATGTAAGACCACGTCTGGGACGTTGGCATCAATA
1 TATGTGTTTTCGTGTAAGACCATGTCTGAGACATTGGCATCGATA
* ** *
46803103 TATGTGTTTTCGTGTAAGACCACGTCTG-GTATGTTAGCATCGATA
1 TATGTGTTTTCGTGTAAGACCATGTCTGAG-ACATTGGCATCGATA
* * * * *
46803148 TATATGGTTACGAGTAAGACCATGTCT-AGGACATCGGCATCG-TA
1 TATGTGTTTTCGTGTAAGACCATGTCTGA-GACATTGGCATCGATA
* * * * *
46803192 T-T-TG-ATTCGTGTAAGACCCTATCTGGGACAGTGGCATCGATA
1 TATGTGTTTTCGTGTAAGACCATGTCTGAGACATTGGCATCGATA
46803234 T
1 T
46803235 GAGATAGCAT
Statistics
Matches: 146, Mismatches: 26, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
41 26 0.18
42 5 0.03
43 1 0.01
44 4 0.03
45 109 0.75
46 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (45 bp):
TATGTGTTTTCGTGTAAGACCATGTCTGAGACATTGGCATCGATA
Found at i:46806166 original size:40 final size:40
Alignment explanation
Indices: 46806108--46806184 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
46806098 ATCCTACTGA
*
46806108 ACGAAACTAAACTAGTATCATGCATCAACTAAATCAACTC
1 ACGAAACTAAACTAGTATCATGAATCAACTAAATCAACTC
* *
46806148 ACGAAACTAAACTGGTATCATGAATCAATTAAATCAA
1 ACGAAACTAAACTAGTATCATGAATCAACTAAATCAA
46806185 TTCAATAACT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.47, C:0.21, G:0.09, T:0.23
Consensus pattern (40 bp):
ACGAAACTAAACTAGTATCATGAATCAACTAAATCAACTC
Found at i:46812956 original size:35 final size:36
Alignment explanation
Indices: 46812899--46812969 Score: 108
Period size: 35 Copynumber: 2.0 Consensus size: 36
46812889 AAAATTGGAC
* *
46812899 ATGGATGGAATTTTTTTGAAAGTTTAGTAGGAAGGG
1 ATGGAAGGAATTTTTTGGAAAGTTTAGTAGGAAGGG
*
46812935 ATGGAAGGAA-TTTTTGGAAAGTTTAGTAGTAAGGG
1 ATGGAAGGAATTTTTTGGAAAGTTTAGTAGGAAGGG
46812970 TATTTTGGTC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 23 0.72
36 9 0.28
ACGTcount: A:0.32, C:0.00, G:0.34, T:0.34
Consensus pattern (36 bp):
ATGGAAGGAATTTTTTGGAAAGTTTAGTAGGAAGGG
Done.