Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 152 of 235
Found at i:51204954 original size:21 final size:21
Alignment explanation
Indices: 51204928--51204971 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
51204918 ATACACTCAG
51204928 CTTAATTGAGCT-ATTACTAAA
1 CTTAATTGAGCTAATTA-TAAA
51204949 CTTAATTGAGCTAATTATAAA
1 CTTAATTGAGCTAATTATAAA
51204970 CT
1 CT
51204972 ACAAGACCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.39
Consensus pattern (21 bp):
CTTAATTGAGCTAATTATAAA
Found at i:51214281 original size:46 final size:46
Alignment explanation
Indices: 51214223--51214396 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
51214213 ACACCTTATA
51214223 GCCGATGCATGTCCCAAACATGTCTTACACTAGCT-TACATCTCGAG
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTCT-CATCTCGAG
* * * *
51214269 GCCAATGCATGTCCCAAACATGTCTTACATTAGCTCTCATCTCAAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATCTCGAG
** * * * * *
51214315 GTTGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCAT-CTCGAG
* *
51214363 GCCGATGCATGTCTCAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGC
51214397 ACACAAATAA
Statistics
Matches: 104, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
46 56 0.54
47 25 0.24
48 22 0.21
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATCTCGAG
Found at i:51221736 original size:50 final size:50
Alignment explanation
Indices: 51221660--51221895 Score: 196
Period size: 50 Copynumber: 4.8 Consensus size: 50
51221650 TGCTAGGGAT
*
51221660 ATATAAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGAG
1 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGAG
* * * * * * *
51221710 ATATGAGAGCTAGGGTAAGACAATGTCTGGGATAGGGAATCA-ACT--TG
1 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGAG
* * * * * ** *
51221757 ATATGTG-TC-AGTATAAGACCATGTTTAGGACATGGCATTGGCAC-CGAT
1 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC-CTCGAG
* * * * * *
51221805 AGATGAGAGCTAGTGTAAGACCATGTTTGAGACATGGTATCGGCCTCGAT
1 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGAG
* * *
51221855 AAATGAGAGTTAGTGTAAGACAATGTCTGGGACATGGCATC
1 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
51221896 GACTTTGATG
Statistics
Matches: 142, Mismatches: 37, Indels: 14
0.74 0.19 0.07
Matches are distributed among these distances:
45 21 0.15
46 1 0.01
47 8 0.06
48 5 0.04
49 4 0.03
50 103 0.73
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.25
Consensus pattern (50 bp):
ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGAG
Found at i:51222335 original size:41 final size:41
Alignment explanation
Indices: 51222289--51222368 Score: 151
Period size: 41 Copynumber: 2.0 Consensus size: 41
51222279 AGTAGGTCGA
*
51222289 TACCTATGGTGTATAATTATGTGGTAAATTTGATGGATGGT
1 TACCTATGGTGTATAATTATGTGGTAAATTTGACGGATGGT
51222330 TACCTATGGTGTATAATTATGTGGTAAATTTGACGGATG
1 TACCTATGGTGTATAATTATGTGGTAAATTTGACGGATG
51222369 ATTATGTGTG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.28, C:0.06, G:0.26, T:0.40
Consensus pattern (41 bp):
TACCTATGGTGTATAATTATGTGGTAAATTTGACGGATGGT
Found at i:51227793 original size:13 final size:13
Alignment explanation
Indices: 51227775--51227799 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51227765 TATGTGATAT
51227775 GTGTGAAAATTTC
1 GTGTGAAAATTTC
51227788 GTGTGAAAATTT
1 GTGTGAAAATTT
51227800 TATTGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:51228953 original size:22 final size:22
Alignment explanation
Indices: 51228922--51228964 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
51228912 GCAAATACGT
51228922 TTGGCACAAAACCATAATCAGG
1 TTGGCACAAAACCATAATCAGG
* *
51228944 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAACCATAATCAG
51228965 AATAATTGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (22 bp):
TTGGCACAAAACCATAATCAGG
Found at i:51229447 original size:27 final size:27
Alignment explanation
Indices: 51229383--51229755 Score: 270
Period size: 27 Copynumber: 13.8 Consensus size: 27
51229373 ATTTCACCCT
* * *
51229383 TCAAGGGTGTTTTGGTAAATCTACAAA
1 TCAAGGGTATTTTGGTAATTTTACAAA
* * *
51229410 CCAAGGTTATTTTGGTAATTTTGCAAA
1 TCAAGGGTATTTTGGTAATTTTACAAA
* * * **
51229437 TTAACGGTATTTCT-ATAATTTTTGAAA
1 TCAAGGGTATTT-TGGTAATTTTACAAA
* ** *
51229464 GTCAAGGGTATTTTTGCCATTTTATAAA
1 -TCAAGGGTATTTTGGTAATTTTACAAA
* *
51229492 TCAGGGGTAGTTTT-GTAATTTTCCAAA
1 TCAAGGGTA-TTTTGGTAATTTTACAAA
* * * *
51229519 TCAAGGATATTTCGATAATTTTCCAAA
1 TCAAGGGTATTTTGGTAATTTTACAAA
* * *
51229546 TCAGGGGTATTTCT-ATAATGTTACAAA
1 TCAAGGGTATTT-TGGTAATTTTACAAA
** * *
51229573 TTTAGGGTATTTCGGTAATTTTACAAG
1 TCAAGGGTATTTTGGTAATTTTACAAA
** *
51229600 TCGAA-GGTATTTCAGTAATTTTACAAG
1 TC-AAGGGTATTTTGGTAATTTTACAAA
* * *
51229627 TCGAGGGTATTTCGGTAATTTTACAAG
1 TCAAGGGTATTTTGGTAATTTTACAAA
* *
51229654 TCAAGGGTATTTCGGTAATTTCACAAA
1 TCAAGGGTATTTTGGTAATTTTACAAA
* * *
51229681 -CTAGGGTATTTCGATAATTTTACAAA
1 TCAAGGGTATTTTGGTAATTTTACAAA
* * * *
51229707 CCAGGGGTATTTTGGTAATTTTGCTAA
1 TCAAGGGTATTTTGGTAATTTTACAAA
*
51229734 TCAATGGTATTTTGGTAATTTT
1 TCAAGGGTATTTTGGTAATTTT
51229756 GTAAACTAAG
Statistics
Matches: 275, Mismatches: 61, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
26 27 0.10
27 224 0.81
28 24 0.09
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (27 bp):
TCAAGGGTATTTTGGTAATTTTACAAA
Found at i:51229762 original size:80 final size:81
Alignment explanation
Indices: 51229576--51229781 Score: 226
Period size: 80 Copynumber: 2.6 Consensus size: 81
51229566 TTACAAATTT
* * * **
51229576 AGGGTATTTCGGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTACAAGTCGAGGGTATTTC
1 AGGGTATTTCGGTAATTTCACAA-ACTAAGGGTATTTCAGTAATTTTACAAACCGAGGGTATTTC
51229640 GGTAATTTTACAAGTCA
65 GGTAATTTTACAAGTCA
51229657 AGGGTATTTCGGTAATTTCACAAACT-AGGGTATTTC-GATAATTTTACAAACC-AGGGGTATTT
1 AGGGTATTTCGGTAATTTCACAAACTAAGGGTATTTCAG-TAATTTTACAAACCGA-GGGTATTT
* *
51229719 TGGTAATTTTGCTAA-TCA
64 CGGTAATTTTAC-AAGTCA
* * ***
51229737 ATGGTATTTTGGTAATTTTGTAAACTAAGGGTA-TTCAGTAATTTT
1 AGGGTATTTCGGTAATTTCACAAACTAAGGGTATTTCAGTAATTTT
51229782 GTAAACTAAG
Statistics
Matches: 107, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
79 3 0.03
80 73 0.68
81 31 0.29
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (81 bp):
AGGGTATTTCGGTAATTTCACAAACTAAGGGTATTTCAGTAATTTTACAAACCGAGGGTATTTCG
GTAATTTTACAAGTCA
Found at i:51229769 original size:27 final size:27
Alignment explanation
Indices: 51229630--51229798 Score: 141
Period size: 27 Copynumber: 6.3 Consensus size: 27
51229620 TTACAAGTCG
*
51229630 AGGGTATTTCGGTAA-TTT-TACAAGTCA
1 AGGGTATTTCGGTAATTTTGTA-AACT-A
***
51229657 AGGGTATTTCGGTAATTTCACAAACT-
1 AGGGTATTTCGGTAATTTTGTAAACTA
* ** *
51229683 AGGGTATTTCGATAATTTTACAAACCA
1 AGGGTATTTCGGTAATTTTGTAAACTA
* * *
51229710 GGGGTATTTTGGTAATTTTGCTAATC-A
1 AGGGTATTTCGGTAATTTTG-TAAACTA
* *
51229737 ATGGTATTTTGGTAATTTTGTAAACTA
1 AGGGTATTTCGGTAATTTTGTAAACTA
*
51229764 AGGGTA-TTCAGTAATTTTGTAAACTA
1 AGGGTATTTCGGTAATTTTGTAAACTA
*
51229790 AGGGCATTT
1 AGGGTATTT
51229799 TAGTAATTCT
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
26 50 0.43
27 58 0.50
28 8 0.07
29 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTGTAAACTA
Found at i:51229799 original size:80 final size:80
Alignment explanation
Indices: 51229384--51229806 Score: 230
Period size: 81 Copynumber: 5.2 Consensus size: 80
51229374 TTTCACCCTT
* * * ** * * ** * *
51229384 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGTTATTTTGGTAATTTTGCAAATTAACGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAGTCAAGGGTATTTCGGTAATTTCACAAACT-AGGGTATTT
* ** *
51229449 CTATAATTTTTGAAAGT
65 CGATAATTTTACAAA-C
* ** * * * * * *
51229466 CAAGGGTATTTTTGCCATTTTATAAATCAGGGGTAGTTT-TGTAATTTTC-CAAATCAAGGATAT
1 CAAGGGTATTTTGGTAATTTTACAAGTCAAGGGTA-TTTCGGTAA-TTTCACAAA-CTAGGGTAT
* *
51229529 TTCGATAATTTTCCAAAT
63 TTCGATAATTTTACAAAC
* * * * ** * * * *
51229547 CAGGGGTATTTCT-ATAATGTTACAAATTTAGGGTATTTCGGTAATTTTACAAGTCGAAGGTATT
1 CAAGGGTATTT-TGGTAATTTTACAAGTCAAGGGTATTTCGGTAATTTCACAA-ACTAGGGTATT
**
51229611 TC-AGTAATTTTACAAGT
64 TCGA-TAATTTTACAAAC
* *
51229628 CGAGGGTATTTCGGTAATTTTACAAGTCAAGGGTATTTCGGTAATTTCACAAACTAGGGTATTTC
1 CAAGGGTATTTTGGTAATTTTACAAGTCAAGGGTATTTCGGTAATTTCACAAACTAGGGTATTTC
51229693 GATAATTTTACAAAC
66 GATAATTTTACAAAC
* * * * ***
51229708 CAGGGGTATTTTGGTAATTTTGCTAA-TCAATGGTATTTTGGTAATTTTGTAAACTAAGGGTA-T
1 CAAGGGTATTTTGGTAATTTTAC-AAGTCAAGGGTATTTCGGTAATTTCACAAACT-AGGGTATT
**
51229771 TC-AGTAATTTTGTAAAC
64 TCGA-TAATTTTACAAAC
* * *
51229788 TAAGGGCATTTTAGTAATT
1 CAAGGGTATTTTGGTAATT
51229807 CTACCCTACA
Statistics
Matches: 263, Mismatches: 65, Indels: 28
0.74 0.18 0.08
Matches are distributed among these distances:
79 1 0.00
80 100 0.38
81 103 0.39
82 53 0.20
83 6 0.02
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (80 bp):
CAAGGGTATTTTGGTAATTTTACAAGTCAAGGGTATTTCGGTAATTTCACAAACTAGGGTATTTC
GATAATTTTACAAAC
Found at i:51229821 original size:27 final size:27
Alignment explanation
Indices: 51229791--51229871 Score: 126
Period size: 27 Copynumber: 3.0 Consensus size: 27
51229781 TGTAAACTAA
*
51229791 GGGCATTTTAGTAATTCTACCCTACAG
1 GGGCATTTCAGTAATTCTACCCTACAG
*
51229818 GGGCATTTCAGTAATTCTATCCTACAG
1 GGGCATTTCAGTAATTCTACCCTACAG
* *
51229845 GGGCATTTCAGTAATACTAGCCTACAG
1 GGGCATTTCAGTAATTCTACCCTACAG
51229872 ATATGAGATT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (27 bp):
GGGCATTTCAGTAATTCTACCCTACAG
Found at i:51237532 original size:6 final size:6
Alignment explanation
Indices: 51237486--51237544 Score: 59
Period size: 6 Copynumber: 10.0 Consensus size: 6
51237476 TTTTTCTCGA
* * *
51237486 TTTTC- TTTTCT TTGTCA TTTTCT TTCTT-T TTTTCT TGTTCT TTTTCT
1 TTTTCT TTTTCT TTTTCT TTTTCT TT-TTCT TTTTCT TTTTCT TTTTCT
*
51237533 TTTACT TTTTCT
1 TTTTCT TTTTCT
51237545 ACATACTCTT
Statistics
Matches: 43, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
5 7 0.16
6 34 0.79
7 2 0.05
ACGTcount: A:0.03, C:0.17, G:0.03, T:0.76
Consensus pattern (6 bp):
TTTTCT
Found at i:51240586 original size:30 final size:30
Alignment explanation
Indices: 51240551--51240631 Score: 117
Period size: 30 Copynumber: 2.7 Consensus size: 30
51240541 TTTACGAGTC
* *
51240551 TAGGGGCAAAAATGTAATTTTGACAAAGTT
1 TAGGGGCAAAATTGTAATTTTGACAAAATT
*
51240581 TAGGGGCAAAATTGTAATTTTGATAAAATT
1 TAGGGGCAAAATTGTAATTTTGACAAAATT
* *
51240611 TAAGGGCAAAATTATAATTTT
1 TAGGGGCAAAATTGTAATTTT
51240632 TTTCAAAATA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 46 1.00
ACGTcount: A:0.41, C:0.05, G:0.20, T:0.35
Consensus pattern (30 bp):
TAGGGGCAAAATTGTAATTTTGACAAAATT
Found at i:51245302 original size:21 final size:21
Alignment explanation
Indices: 51245276--51245318 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
51245266 AGTTTATGCT
*
51245276 TAAAAAAATATTTG-AAAATAG
1 TAAAAAAA-AGTTGAAAAATAG
51245297 TAAAAAAAAGTTGAAAAATAG
1 TAAAAAAAAGTTGAAAAATAG
51245318 T
1 T
51245319 TTGCGTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.63, C:0.00, G:0.12, T:0.26
Consensus pattern (21 bp):
TAAAAAAAAGTTGAAAAATAG
Found at i:51247115 original size:44 final size:48
Alignment explanation
Indices: 51247052--51247140 Score: 114
Period size: 46 Copynumber: 1.9 Consensus size: 48
51247042 TTCTATTTTT
*
51247052 GAAAACTTATATTCAATTCC-AAATGATT-CCATTTCTCTATTTCAGA
1 GAAAACTTATAATCAATTCCTAAATGATTCCCATTTCTCTATTTCAGA
* * *
51247098 GAAAAC-TATAATC-ATTCCTGAATGTTTCCCATTTCTCTTTTTC
1 GAAAACTTATAATCAATTCCTAAATGATTCCCATTTCTCTATTTC
51247141 TATCCATTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
44 5 0.14
45 12 0.32
46 20 0.54
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.42
Consensus pattern (48 bp):
GAAAACTTATAATCAATTCCTAAATGATTCCCATTTCTCTATTTCAGA
Found at i:51251254 original size:12 final size:13
Alignment explanation
Indices: 51251237--51251274 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
51251227 ATCTTGGAAT
51251237 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
51251249 ATTAAGAACACATA
1 ATTAAGAACA-AGA
51251263 ATTAAGAACAAG
1 ATTAAGAACAAG
51251275 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:51254243 original size:423 final size:423
Alignment explanation
Indices: 51253457--51254303 Score: 1694
Period size: 423 Copynumber: 2.0 Consensus size: 423
51253447 GAAGGGGGAC
51253457 GCGGAGTAGGAGCCAAGGAATTAGTCAAGGGAAGTCGATTGGTCCATCTCAGAAACCGGATTCAT
1 GCGGAGTAGGAGCCAAGGAATTAGTCAAGGGAAGTCGATTGGTCCATCTCAGAAACCGGATTCAT
51253522 CATCAAGACTGAAGATCTCCCTTCAATTTCCATTTAGGGGTTTTGGGTTTCTTTATGTTTTGTAT
66 CATCAAGACTGAAGATCTCCCTTCAATTTCCATTTAGGGGTTTTGGGTTTCTTTATGTTTTGTAT
51253587 TCATTATTCTTCTGAGATGTTTTCTTCTATAATTGTGAACTAAACCCCCTAAATACCTAAGGGGA
131 TCATTATTCTTCTGAGATGTTTTCTTCTATAATTGTGAACTAAACCCCCTAAATACCTAAGGGGA
51253652 ATGAAACCTAAGACGGATCTTGTTATTATTATCTGAATAGTATGATAAATATTTGACTTGTTCTT
196 ATGAAACCTAAGACGGATCTTGTTATTATTATCTGAATAGTATGATAAATATTTGACTTGTTCTT
51253717 AATTATGTGTTCTTAATTCTTTTTTTAATATTCTAGGATATTGTTTCAAGTTAATGCTCTTATTT
261 AATTATGTGTTCTTAATTCTTTTTTTAATATTCTAGGATATTGTTTCAAGTTAATGCTCTTATTT
51253782 AGAGGAGGAATAGACCCTGTCTAAGAGTTAATTTGTTATAATTAAGCGGAGTTGATTGCACGCCC
326 AGAGGAGGAATAGACCCTGTCTAAGAGTTAATTTGTTATAATTAAGCGGAGTTGATTGCACGCCC
51253847 AGAGATAGGGTGATAAGATTTTGCCGGATTAGG
391 AGAGATAGGGTGATAAGATTTTGCCGGATTAGG
51253880 GCGGAGTAGGAGCCAAGGAATTAGTCAAGGGAAGTCGATTGGTCCATCTCAGAAACCGGATTCAT
1 GCGGAGTAGGAGCCAAGGAATTAGTCAAGGGAAGTCGATTGGTCCATCTCAGAAACCGGATTCAT
51253945 CATCAAGACTGAAGATCTCCCTTCAATTTCCATTTAGGGGTTTTGGGTTTCTTTATGTTTTGTAT
66 CATCAAGACTGAAGATCTCCCTTCAATTTCCATTTAGGGGTTTTGGGTTTCTTTATGTTTTGTAT
51254010 TCATTATTCTTCTGAGATGTTTTCTTCTATAATTGTGAACTAAACCCCCTAAATACCTAAGGGGA
131 TCATTATTCTTCTGAGATGTTTTCTTCTATAATTGTGAACTAAACCCCCTAAATACCTAAGGGGA
51254075 ATGAAACCTAAGACGGATCTTGTTATTATTATCTGAATAGTATGATAAATATTTGACTTGTTCTT
196 ATGAAACCTAAGACGGATCTTGTTATTATTATCTGAATAGTATGATAAATATTTGACTTGTTCTT
51254140 AATTATGTGTTCTTAATTCTTTTTTTAATATTCTAGGATATTGTTTCAAGTTAATGCTCTTATTT
261 AATTATGTGTTCTTAATTCTTTTTTTAATATTCTAGGATATTGTTTCAAGTTAATGCTCTTATTT
51254205 AGAGGAGGAATAGACCCTGTCTAAGAGTTAATTTGTTATAATTAAGCGGAGTTGATTGCACGCCC
326 AGAGGAGGAATAGACCCTGTCTAAGAGTTAATTTGTTATAATTAAGCGGAGTTGATTGCACGCCC
51254270 AGAGATAGGGTGATAAGATTTTGCCGGATTAGG
391 AGAGATAGGGTGATAAGATTTTGCCGGATTAGG
51254303 G
1 G
51254304 TGAAACCTAA
Statistics
Matches: 424, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
423 424 1.00
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (423 bp):
GCGGAGTAGGAGCCAAGGAATTAGTCAAGGGAAGTCGATTGGTCCATCTCAGAAACCGGATTCAT
CATCAAGACTGAAGATCTCCCTTCAATTTCCATTTAGGGGTTTTGGGTTTCTTTATGTTTTGTAT
TCATTATTCTTCTGAGATGTTTTCTTCTATAATTGTGAACTAAACCCCCTAAATACCTAAGGGGA
ATGAAACCTAAGACGGATCTTGTTATTATTATCTGAATAGTATGATAAATATTTGACTTGTTCTT
AATTATGTGTTCTTAATTCTTTTTTTAATATTCTAGGATATTGTTTCAAGTTAATGCTCTTATTT
AGAGGAGGAATAGACCCTGTCTAAGAGTTAATTTGTTATAATTAAGCGGAGTTGATTGCACGCCC
AGAGATAGGGTGATAAGATTTTGCCGGATTAGG
Found at i:51258473 original size:5 final size:5
Alignment explanation
Indices: 51258463--51258505 Score: 50
Period size: 5 Copynumber: 7.8 Consensus size: 5
51258453 AAAAGGCAAT
51258463 TAAAA TAAAA TATAGAGA TAAAAA TAAAA TAAAA TAAAA TAAA
1 TAAAA TAAAA TA-A-A-A T-AAAA TAAAA TAAAA TAAAA TAAA
51258506 TAGAAGGTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
5 25 0.74
6 3 0.09
7 2 0.06
8 3 0.09
9 1 0.03
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (5 bp):
TAAAA
Found at i:51283828 original size:22 final size:23
Alignment explanation
Indices: 51283803--51283845 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
51283793 TATCCCCACA
*
51283803 TGGAGTGCAG-GGCTGGACGGAG
1 TGGAGTGCAGAGGCTGAACGGAG
*
51283825 TGGAGTGTAGAGGCTGAACGG
1 TGGAGTGCAGAGGCTGAACGG
51283846 GTCGGATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.21, C:0.12, G:0.51, T:0.16
Consensus pattern (23 bp):
TGGAGTGCAGAGGCTGAACGGAG
Found at i:51298444 original size:42 final size:42
Alignment explanation
Indices: 51298392--51298506 Score: 110
Period size: 42 Copynumber: 2.8 Consensus size: 42
51298382 AAGAATCTTG
* *
51298392 CACATTAAGTGCCAATACATAGCCCAAGCTATCTCAAT-TACA
1 CACACTAAGTGCCAATACATAGCCAAAGCTATCTCAATCT-CA
* * **
51298434 CACACTAAGTGCCAACT-CATAGTCAAAGCCATCTTGATCTCA
1 CACACTAAGTGCCAA-TACATAGCCAAAGCTATCTCAATCTCA
* **
51298476 CACACTAAGTGCC-ATATATAGCTGAAGCTAT
1 CACACTAAGTGCCAATACATAGCCAAAGCTAT
51298507 GTAGAATTGC
Statistics
Matches: 59, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
40 1 0.02
41 11 0.19
42 45 0.76
43 2 0.03
ACGTcount: A:0.36, C:0.28, G:0.12, T:0.24
Consensus pattern (42 bp):
CACACTAAGTGCCAATACATAGCCAAAGCTATCTCAATCTCA
Found at i:51317387 original size:20 final size:20
Alignment explanation
Indices: 51317364--51317437 Score: 62
Period size: 20 Copynumber: 3.5 Consensus size: 20
51317354 TTCAAATTCG
51317364 CAACAAAGGTACTTAATTAA
1 CAACAAAGGTACTTAATTAA
51317384 CAACAAAGGTCAGTCCTATACATT-A
1 CAACAAAGGT-A---CT-TA-ATTAA
* *
51317409 CCA-AAAGATACTTAATTAA
1 CAACAAAGGTACTTAATTAA
51317428 CAACAAAGGT
1 CAACAAAGGT
51317438 CAGTCCTATA
Statistics
Matches: 42, Mismatches: 4, Indels: 16
0.68 0.06 0.26
Matches are distributed among these distances:
18 3 0.07
19 5 0.12
20 17 0.40
21 1 0.02
23 1 0.02
24 7 0.17
25 5 0.12
26 3 0.07
ACGTcount: A:0.47, C:0.19, G:0.11, T:0.23
Consensus pattern (20 bp):
CAACAAAGGTACTTAATTAA
Found at i:51317868 original size:39 final size:39
Alignment explanation
Indices: 51317811--51317974 Score: 274
Period size: 39 Copynumber: 4.2 Consensus size: 39
51317801 NNNNNNNNNN
*
51317811 AGCACATTTCCTGCGGACCTGAAGTCCGGATATAATTCC
1 AGCACATTGCCTGCGGACCTGAAGTCCGGATATAATTCC
** *
51317850 AGCACATTGCCTAAGGACCTGAAGTCCAGATATAATTCC
1 AGCACATTGCCTGCGGACCTGAAGTCCGGATATAATTCC
51317889 AGCACATTGCCTGCGGACCTGAAGTCCGGATATAATTCC
1 AGCACATTGCCTGCGGACCTGAAGTCCGGATATAATTCC
* *
51317928 AGCACATTGCCTGTGGACCTGAAGTCCGGATATAATTCT
1 AGCACATTGCCTGCGGACCTGAAGTCCGGATATAATTCC
51317967 AGCACATT
1 AGCACATT
51317975 TAATTATGAT
Statistics
Matches: 116, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 116 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (39 bp):
AGCACATTGCCTGCGGACCTGAAGTCCGGATATAATTCC
Found at i:51325859 original size:40 final size:40
Alignment explanation
Indices: 51325794--51325928 Score: 216
Period size: 40 Copynumber: 3.4 Consensus size: 40
51325784 CGGATGTAAC
* **
51325794 AACCAGCACGAATGCCTTCAAGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
51325834 AACCTGTACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
51325874 AACCCGCATGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
51325914 AACCCGCACGAATGC
1 AACCCGCACGAATGC
51325929 TATGCACATA
Statistics
Matches: 87, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 87 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:51330472 original size:35 final size:35
Alignment explanation
Indices: 51330426--51330496 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
51330416 TCTTGGAAAG
51330426 TTGATATAGCCATGTTAGAGGTTATTAATTTTATC
1 TTGATATAGCCATGTTAGAGGTTATTAATTTTATC
51330461 TTGATATAGCCATGTTAGAGGTTATTAATTTTATC
1 TTGATATAGCCATGTTAGAGGTTATTAATTTTATC
51330496 T
1 T
51330497 ATCTTTCTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.28, C:0.08, G:0.17, T:0.46
Consensus pattern (35 bp):
TTGATATAGCCATGTTAGAGGTTATTAATTTTATC
Found at i:51343805 original size:34 final size:34
Alignment explanation
Indices: 51343761--51343825 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 34
51343751 TTTCAGTTAA
* * *
51343761 GGCCTTAGCCCATACCAGTAATAGTAGCAGTCTC
1 GGCCTGAGCCCATACCAGTAACAGTACCAGTCTC
**
51343795 GGCCTGAGCCCATTTCAGTAACAGTACCAGT
1 GGCCTGAGCCCATACCAGTAACAGTACCAGT
51343826 AGGGCTTAAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 26 1.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (34 bp):
GGCCTGAGCCCATACCAGTAACAGTACCAGTCTC
Found at i:51348415 original size:24 final size:24
Alignment explanation
Indices: 51348370--51348415 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
51348360 AAGCCCTCTC
* *
51348370 GAGCTTTCCGTATAAGGTTCTTGT
1 GAGCTTCCCGTATAAGGCTCTTGT
51348394 GAGCTTCCCG-ATAATGGCTCTT
1 GAGCTTCCCGTATAA-GGCTCTT
51348416 CAGAATGTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.37
Consensus pattern (24 bp):
GAGCTTCCCGTATAAGGCTCTTGT
Found at i:51349858 original size:27 final size:27
Alignment explanation
Indices: 51349816--51349880 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
51349806 GGGCAAAGCA
* *
51349816 GTCATTTTACCCTACAGGGGTATGTCG
1 GTCATTTTACACTACAAGGGTATGTCG
* *
51349843 GTCATTTTACAGTACAAGGGTATTTCG
1 GTCATTTTACACTACAAGGGTATGTCG
*
51349870 GTAATTTTACA
1 GTCATTTTACA
51349881 AATTGAGTGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.37
Consensus pattern (27 bp):
GTCATTTTACACTACAAGGGTATGTCG
Found at i:51349892 original size:27 final size:27
Alignment explanation
Indices: 51349859--51350103 Score: 289
Period size: 27 Copynumber: 9.2 Consensus size: 27
51349849 TTACAGTACA
51349859 AGGGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATTG
* *
51349886 AGTGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATTG
* *
51349913 AGGGTGTTTCGGT-ATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATTG
* * *
51349939 AGGGTGTTTCGGTAATTTTAGAAATCG
1 AGGGTATTTCGGTAATTTTACAAATTG
* * *
51349966 ATGGTGTTTCGGTAATTTCACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATTG
* *
51349993 AGGGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATTG
** *
51350020 AGGGTATTTTAGTAATTTCAC-AATTG
1 AGGGTATTTCGGTAATTTTACAAATTG
**
51350046 AGGGTATTTCGACAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATTG
* **
51350073 GGGGTA-TTCAATAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATTG
51350099 AGGGT
1 AGGGT
51350104 GTAACACCCC
Statistics
Matches: 188, Mismatches: 28, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
26 67 0.36
27 121 0.64
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATTG
Found at i:51349932 original size:80 final size:81
Alignment explanation
Indices: 51349833--51350103 Score: 291
Period size: 80 Copynumber: 3.4 Consensus size: 81
51349823 TACCCTACAG
* * * * *
51349833 GGGTATGTCGGTCATTTTAC-AGTACAAGGGTATTTCGGTAATTTTACAAATTGAGTGTATTTTG
1 GGGTATTTCGGTAATTTTACAAAT-CGAGGGTATTTCGGTAATTTTACAAATTGAGTGTATTTCG
51349897 GTAATTTTACAAATTGA
65 GTAATTTTACAAATTGA
* * * * *
51349914 GGGTGTTTCGGT-ATTTTACAAATCGAGGGTGTTTCGGTAATTTTAGAAATCGA-TGGTGTTTCG
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATTGAGT-GTATTTCG
*
51349977 GTAATTTCACAAATTGA
65 GTAATTTTACAAATTGA
* ** * * *
51349994 GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTCAC-AATTGAGGGTATTTCGA
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATTGAGTGTATTTCGG
* *
51350058 CAATTTTACAAATTGG
66 TAATTTTACAAATTGA
** *
51350074 GGGTA-TTCAATAATTTTACAAATTGAGGGT
1 GGGTATTTCGGTAATTTTACAAATCGAGGGT
51350104 GTAACACCCC
Statistics
Matches: 160, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
79 24 0.15
80 95 0.59
81 41 0.26
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.39
Consensus pattern (81 bp):
GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATTGAGTGTATTTCGG
TAATTTTACAAATTGA
Found at i:51349953 original size:53 final size:54
Alignment explanation
Indices: 51349833--51350103 Score: 282
Period size: 53 Copynumber: 5.1 Consensus size: 54
51349823 TACCCTACAG
* * * * *
51349833 GGGTATGTCGGTCATTTTAC-AGTACAAGGGTATTTCGGTAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAAT-CGAGGGTGTTTCGGTAATTTTACAAATTGA
* * * *
51349887 GTGTATTTTGGTAATTTTACAAATTGAGGGTGTTTCGGT-ATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATTGA
* * * *
51349940 GGGTGTTTCGGTAATTTTAGAAATCGATGGTGTTTCGGTAATTTCACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATTGA
* * ** *
51349994 GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTCAC-AATTGA
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATTGA
** * **
51350047 GGGTATTTCGACAATTTTACAAATTG-GGG-GTATTCAATAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTGT-TTCGGTAATTTTACAAATTGA
51350100 GGGT
1 GGGT
51350104 GTAACACCCC
Statistics
Matches: 181, Mismatches: 32, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
51 1 0.01
52 14 0.08
53 84 0.46
54 80 0.44
55 2 0.01
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.39
Consensus pattern (54 bp):
GGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATTGA
Found at i:51350049 original size:107 final size:107
Alignment explanation
Indices: 51349865--51350070 Score: 270
Period size: 107 Copynumber: 1.9 Consensus size: 107
51349855 TACAAGGGTA
* * ** * * *
51349865 TTTCGGTAATTTTACAAATTGAGTGTATTTTGGTAATTTTACAAATTGAGGGTGTTTCGGTATTT
1 TTTCGGTAATTTCACAAATTGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTATTT
* * ** *
51349930 TACAAATCGAGGGTGTTTCGGTAATTTTAGAAATCGATGGTG
66 CACAAATCGAGGGTATTTCGACAATTTTACAAATCGATGGTG
*
51349972 TTTCGGTAATTTCACAAATTGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATT
1 TTTCGGTAATTTCACAAATTGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGT-ATT
*
51350037 TCAC-AATTGAGGGTATTTCGACAATTTTACAAAT
65 TCACAAATCGAGGGTATTTCGACAATTTTACAAAT
51350071 TGGGGGTATT
Statistics
Matches: 84, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
107 78 0.93
108 6 0.07
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (107 bp):
TTTCGGTAATTTCACAAATTGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTATTT
CACAAATCGAGGGTATTTCGACAATTTTACAAATCGATGGTG
Found at i:51354596 original size:26 final size:27
Alignment explanation
Indices: 51354562--51354624 Score: 78
Period size: 27 Copynumber: 2.3 Consensus size: 27
51354552 ATACCCTTAG
51354562 TTGTAAAAAT-ACTGAAATA-CTCTCGA-
1 TTGT-AAAATGACTGAAATACCT-TCGAC
51354588 TGTGTAAAATGACTGAAATACCTTCGAC
1 T-TGTAAAATGACTGAAATACCTTCGAC
51354616 TTGTAAAAT
1 TTGTAAAAT
51354625 TACCAAAGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
26 6 0.18
27 24 0.73
28 3 0.09
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (27 bp):
TTGTAAAATGACTGAAATACCTTCGAC
Found at i:51354844 original size:27 final size:27
Alignment explanation
Indices: 51354633--51354845 Score: 223
Period size: 27 Copynumber: 7.9 Consensus size: 27
51354623 ATTACCAAAG
*
51354633 TACCCCCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
51354660 TACCCCCGATTTACATAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * * *
51354687 TACCCCCGTTTTACATAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-ATTT
* * * *
51354714 TACCCTCAACTTATAGAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-ATTT
**
51354741 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
51354768 TACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
*
51354795 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
*
51354822 TACCCTCGATTTACAAAATTACTA
1 TACCCTCGATTTACAGAATTACTA
51354846 AAATACCCTT
Statistics
Matches: 160, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
27 160 1.00
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:51354852 original size:27 final size:27
Alignment explanation
Indices: 51354795--51355047 Score: 149
Period size: 27 Copynumber: 9.3 Consensus size: 27
51354785 ATTACTGTTT
* ***
51354795 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTTGATTTACAAAATTACTAAAA
*
51354822 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* ** *
51354849 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* ** *
51354876 TACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTACAAAATTACTAAAA
* *** *
51354903 TACCCTTGGTTTGTGAAATTA-TCGAAA
1 TACCCTTGATTTACAAAATTACT-AAAA
* ** *
51354930 TA-CCTTCAATTTGTAAAATTACCAAAA
1 TACCCTT-GATTTACAAAATTACTAAAA
* *
51354957 TACCCCTGATTTACAAAGTTAC-AGAAA
1 TACCCTTGATTTACAAAATTACTA-AAA
51354984 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACTA-AAA
* * *
51355013 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACTAAAA
51355040 TACCCTTG
1 TACCCTTG
51355048 GTTTGTAGAT
Statistics
Matches: 180, Mismatches: 33, Indels: 26
0.75 0.14 0.11
Matches are distributed among these distances:
26 5 0.03
27 146 0.81
28 10 0.06
29 19 0.11
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTAAAA
Found at i:51354854 original size:81 final size:81
Alignment explanation
Indices: 51354633--51354843 Score: 255
Period size: 81 Copynumber: 2.6 Consensus size: 81
51354623 ATTACCAAAG
* * * * **
51354633 TACCCCCGATTTACAGAATTACTATTTTACCCCCGATTTACATAATTACCATTTTACCCCCGTTT
1 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAATT
*
51354698 TACATAATTATCGTTT
66 TACAGAATTATCGTTT
* * * * * *
51354714 TACCCTCAACTTATAGAATTA-TCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAAT
1 TACCCTCGATTTACAGAATTACT-ATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAAT
*
51354778 TTATAGAATTA-CTGTTT
65 TTACAGAATTATC-GTTT
*
51354795 TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
51354844 TAAAATACCC
Statistics
Matches: 108, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
80 2 0.02
81 105 0.97
82 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAATT
TACAGAATTATCGTTT
Found at i:51354907 original size:81 final size:78
Alignment explanation
Indices: 51354822--51355074 Score: 206
Period size: 81 Copynumber: 3.1 Consensus size: 78
51354812 ATTACTATTT
*
51354822 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGTT
1 TACCCTTGATTT-CAAAATTA-TAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCT-GTT
51354887 TGTAAAATTACCAAAA
63 TGTAAAATTACCAAAA
* ** * ** *
51354903 TACCCTTGGTTTGTGAAATTATCGAAATA-CCTTCAATTTGTAAAATTACCAAAATACCCCTGAT
1 TACCCTTGATTT-CAAAATTAT-AAAATACCCTT-GGTTTGTAAAATTACCAAAATACCCCTGTT
51354967 T-TACAAAGTTA-CAGAAA
63 TGTA-AAA-TTACCA-AAA
* ** ** *
51354984 TACCCTTGACTTTCTAAAAATTATAGAAATACCATTGGTTTACAAAATTACTGAAATACCCTTGG
1 TACCCTTGA-TTTC--AAAATTATA-AAATACCCTTGGTTTGTAAAATTACCAAAATACCCCT-G
* *
51355049 TTTGTAGATTTACCAAAA
61 TTTGTAAAATTACCAAAA
*
51355067 CACCCTTG
1 TACCCTTG
51355075 TAGGACGAAA
Statistics
Matches: 134, Mismatches: 25, Indels: 24
0.73 0.14 0.13
Matches are distributed among these distances:
79 2 0.01
80 13 0.10
81 60 0.45
82 3 0.02
83 45 0.34
84 9 0.07
85 2 0.01
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (78 bp):
TACCCTTGATTTCAAAATTATAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGTTTGT
AAAATTACCAAAA
Found at i:51355133 original size:27 final size:27
Alignment explanation
Indices: 51355103--51355170 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
51355093 ATACCTCTAT
* *
51355103 TAGGGTAAAGTGATCGTAA-AGCCCTTG
1 TAGGGTAAAGTGACCGTAATA-CCCCTG
51355130 TAGGGTAAAGTGACCGTAATACCCCTG
1 TAGGGTAAAGTGACCGTAATACCCCTG
* *
51355157 TATGGTAAAATGAC
1 TAGGGTAAAGTGAC
51355171 GAATATGCCC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
27 35 0.97
28 1 0.03
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.25
Consensus pattern (27 bp):
TAGGGTAAAGTGACCGTAATACCCCTG
Found at i:51356018 original size:25 final size:25
Alignment explanation
Indices: 51355980--51356049 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
51355970 AGGAAGTGCT
* *
51355980 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
51356005 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
51356030 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
51356050 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:51356062 original size:24 final size:24
Alignment explanation
Indices: 51355979--51356074 Score: 95
Period size: 25 Copynumber: 3.9 Consensus size: 24
51355969 GAGGAAGTGC
*
51355979 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTATGCCCCAGTTTA-T
* *
51356004 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
51356028 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTATGCCCCAGTTTAT
*
51356052 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
51356075 ATATGATAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
23 5 0.08
24 11 0.18
25 43 0.72
26 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Found at i:51356073 original size:50 final size:50
Alignment explanation
Indices: 51355980--51356074 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
51355970 AGGAAGTGCT
**
51355980 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
* **
51356030 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
51356075 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:51356255 original size:42 final size:42
Alignment explanation
Indices: 51356196--51356287 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
51356186 TAGTCTCCCC
* ** *
51356196 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
51356238 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
51356280 AAATGGGC
1 AAATGGGC
51356288 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:51370176 original size:29 final size:29
Alignment explanation
Indices: 51370123--51370200 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
51370113 AATCATATTC
* *
51370123 ATATGGCCCCTTTAGGCCCAAATCACCTAT
1 ATATGG-CCCATTAGGCCCAAATCACATAT
* *
51370153 ATATGGCCCATTAGGCCCAAATCATATTT
1 ATATGGCCCATTAGGCCCAAATCACATAT
*
51370182 ATATGGCCCGTTAGGCCCA
1 ATATGGCCCATTAGGCCCA
51370201 GACACATTCA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
29 37 0.86
30 6 0.14
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATAT
Found at i:51381615 original size:68 final size:67
Alignment explanation
Indices: 51381543--51381692 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
51381533 CATCATGTGT
* * * *
51381543 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
51381605 ATGTAG
62 ATGTAG
** * *
51381611 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
51381676 AG
66 AG
51381678 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
51381693 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:51381648 original size:64 final size:64
Alignment explanation
Indices: 51381567--51381750 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
51381557 AGACATTATG
* *
51381567 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
51381631 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
51381696 AA
63 AA
* * * *
51381698 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
51381751 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:51389979 original size:25 final size:25
Alignment explanation
Indices: 51389951--51390030 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 25
51389941 CTCTTATGAT
*
51389951 CTTACTGATATTTAGCTCGGAGGAG
1 CTTACTGATATTTAACTCGGAGGAG
* *
51389976 CTTAC-CATTATTTAACTTGGAGGAG
1 CTTACTGA-TATTTAACTCGGAGGAG
* * * *
51390001 CTTACTGTTATTCAACTCAGAGAAG
1 CTTACTGATATTTAACTCGGAGGAG
51390026 CTTAC
1 CTTAC
51390031 CATTTATAGC
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
24 1 0.02
25 43 0.98
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.34
Consensus pattern (25 bp):
CTTACTGATATTTAACTCGGAGGAG
Found at i:51393434 original size:43 final size:43
Alignment explanation
Indices: 51393386--51393469 Score: 98
Period size: 43 Copynumber: 2.0 Consensus size: 43
51393376 TGAGATATGT
51393386 AGCAT-CTGAGCTCGTTAAGAAGTCCGAGTTCATTATGGATGCG
1 AGCATCCT-AGCTCGTTAAGAAGTCCGAGTTCATTATGGATGCG
* * ** * *
51393429 AGCATCCTAGCTTGTTGAGTGGTCTGATTTCATTATGGATG
1 AGCATCCTAGCTCGTTAAGAAGTCCGAGTTCATTATGGATG
51393470 TGCTACATGT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
43 32 0.94
44 2 0.06
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (43 bp):
AGCATCCTAGCTCGTTAAGAAGTCCGAGTTCATTATGGATGCG
Found at i:51407617 original size:93 final size:93
Alignment explanation
Indices: 51407458--51407638 Score: 326
Period size: 93 Copynumber: 1.9 Consensus size: 93
51407448 TAGGAGTTAG
** *
51407458 ATACCAAAATTTAAAGAAATTAATATTGTTAGTGCTCAGGTTGCCTCCCGAGAAGTGCTTATTTA
1 ATACCAAAATTTAAAGAAATTAATATTGTTAGCACTCAGGTTGCCTCCCGAGAAGCGCTTATTTA
51407523 TAGTCTAAGCTCGACTTACCTCTGCTAA
66 TAGTCTAAGCTCGACTTACCTCTGCTAA
*
51407551 ATACCAAAATTTAAAGAAATTAATATTGTTAGCACTCATGTTGCCTCCCGAGAAGCGCTTATTTA
1 ATACCAAAATTTAAAGAAATTAATATTGTTAGCACTCAGGTTGCCTCCCGAGAAGCGCTTATTTA
51407616 TAGTCTAAGCTCGACTTACCTCT
66 TAGTCTAAGCTCGACTTACCTCT
51407639 CCAGCGAATG
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 84 1.00
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.33
Consensus pattern (93 bp):
ATACCAAAATTTAAAGAAATTAATATTGTTAGCACTCAGGTTGCCTCCCGAGAAGCGCTTATTTA
TAGTCTAAGCTCGACTTACCTCTGCTAA
Found at i:51410394 original size:25 final size:25
Alignment explanation
Indices: 51410366--51410452 Score: 113
Period size: 26 Copynumber: 3.4 Consensus size: 25
51410356 CTGGAGGCCT
*
51410366 AGCCTCTTTTAAT-AACTGGGGCATA
1 AGCC-CTTTTGATAAACTGGGGCATA
*
51410391 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTT-GATAAACTGGGGCATA
*
51410417 AGCCCTTTTTGGTAAACTGGGGCATA
1 AGCCC-TTTTGATAAACTGGGGCATA
51410443 AGCCCTTTTG
1 AGCCCTTTTG
51410453 CACTTCCTCC
Statistics
Matches: 57, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
24 5 0.09
25 10 0.18
26 38 0.67
27 4 0.07
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.31
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTGGGGCATA
Found at i:51410409 original size:26 final size:26
Alignment explanation
Indices: 51410379--51410451 Score: 137
Period size: 26 Copynumber: 2.8 Consensus size: 26
51410369 CTCTTTTAAT
51410379 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
51410405 AACTGGGGCATAAGCCCTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
51410431 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
51410452 GCACTTCCTC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:51418008 original size:26 final size:27
Alignment explanation
Indices: 51417978--51418050 Score: 123
Period size: 26 Copynumber: 2.8 Consensus size: 27
51417968 CTCTTTTAAT
51417978 AACTGGGGCATAA-CCCTTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTTCAGTA
*
51418004 AACTGGGGCATAAGCCC-TTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTTCAGTA
51418030 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
51418051 GCACTTCCTC
Statistics
Matches: 44, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
26 38 0.86
27 6 0.14
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (27 bp):
AACTGGGGCATAAGCCCTTTTTCAGTA
Found at i:51418125 original size:9 final size:9
Alignment explanation
Indices: 51418111--51418144 Score: 50
Period size: 9 Copynumber: 3.6 Consensus size: 9
51418101 TCATGTGCAG
51418111 ATCATACAT
1 ATCATACAT
51418120 ATCATATGCAT
1 ATCATA--CAT
51418131 ATCATACAT
1 ATCATACAT
51418140 ATCAT
1 ATCAT
51418145 GTGCATATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 14 0.61
11 9 0.39
ACGTcount: A:0.41, C:0.21, G:0.03, T:0.35
Consensus pattern (9 bp):
ATCATACAT
Found at i:51418129 original size:20 final size:20
Alignment explanation
Indices: 51418100--51418156 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
51418090 TTATGAAAAC
*
51418100 ATCATGTGCAGATCATACAT
1 ATCATGTGCATATCATACAT
*
51418120 ATCATATGCATATCATACAT
1 ATCATGTGCATATCATACAT
51418140 ATCATGTGCATATCATA
1 ATCATGTGCATATCATA
51418157 TCAATATTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:51418163 original size:11 final size:11
Alignment explanation
Indices: 51418100--51418157 Score: 61
Period size: 11 Copynumber: 5.6 Consensus size: 11
51418090 TTATGAAAAC
* *
51418100 ATCATGTGCAG
1 ATCATATGCAT
51418111 ATCATA--CAT
1 ATCATATGCAT
51418120 ATCATATGCAT
1 ATCATATGCAT
51418131 ATCATA--CAT
1 ATCATATGCAT
*
51418140 ATCATGTGCAT
1 ATCATATGCAT
51418151 ATCATAT
1 ATCATAT
51418158 CAATATTGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.41
11 23 0.59
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.34
Consensus pattern (11 bp):
ATCATATGCAT
Found at i:51418231 original size:25 final size:25
Alignment explanation
Indices: 51418203--51418250 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
51418193 ATAATTAAAC
* * *
51418203 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
51418228 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
51418251 CATACTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:51424316 original size:21 final size:20
Alignment explanation
Indices: 51424287--51424325 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
51424277 AATTTTATGC
*
51424287 AATTTAGCTCATAGTTTTAGT
1 AATTAAGCTCAT-GTTTTAGT
*
51424308 AATTAAGCTGATGTTTTA
1 AATTAAGCTCATGTTTTA
51424326 TGACAGTAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (20 bp):
AATTAAGCTCATGTTTTAGT
Found at i:51432755 original size:43 final size:43
Alignment explanation
Indices: 51432703--51432786 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
51432693 TGAGGTATGT
* *
51432703 AGCATCCGAGCTCGTTGAGAGGTCCAAGTTCATTATGGATGCC
1 AGCATCCGAGCTCATTGAGAGGTCCAAGTTCATGATGGATGCC
* *
51432746 AGCATCCGAGCTCATTGAGTGGTCCGAGTTCATGATGGATG
1 AGCATCCGAGCTCATTGAGAGGTCCAAGTTCATGATGGATG
51432787 TGATTCATGT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (43 bp):
AGCATCCGAGCTCATTGAGAGGTCCAAGTTCATGATGGATGCC
Found at i:51443862 original size:19 final size:17
Alignment explanation
Indices: 51443824--51443856 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
51443814 TAAAATACAC
51443824 TCTCTTTACTCTCCCAT
1 TCTCTTTACTCTCCCAT
*
51443841 TCTCTTTATTCTCCCA
1 TCTCTTTACTCTCCCA
51443857 CATTCTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.12, C:0.39, G:0.00, T:0.48
Consensus pattern (17 bp):
TCTCTTTACTCTCCCAT
Found at i:51452231 original size:22 final size:22
Alignment explanation
Indices: 51452201--51452245 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
51452191 TAAAGAAGAA
51452201 AGATAGATCATTGAGATTATGC
1 AGATAGATCATTGAGATTATGC
*
51452223 AGATGGATCATTGAGATTATGC
1 AGATAGATCATTGAGATTATGC
51452245 A
1 A
51452246 TTGATTACAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.09, G:0.24, T:0.31
Consensus pattern (22 bp):
AGATAGATCATTGAGATTATGC
Found at i:51456984 original size:46 final size:46
Alignment explanation
Indices: 51456932--51457145 Score: 232
Period size: 46 Copynumber: 4.6 Consensus size: 46
51456922 TGTGAGCTAA
***
51456932 TGTAAGACATGTCTGGGACATGCATCAGCCACCTTATGAAAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCAGCCACGAGATGAAAGCCAG
* * * * * *
51456978 TGTAAGACCATGTCTGGGATATGGCATC-GACATTGAGACGAGAGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCAGCCA-CGAGATGAAAGCCAG
* * *
51457026 TGTAAGTCATGTCTGGGACATGCATCAGCCTCGAGATGTAAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCAGCCACGAGATGAAAGCCAG
* * * *
51457072 TGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGATAGTCAG
1 TGTAAGACATGTCTGGGACATGCATCAGCCACGAGATGAAAGCCAG
51457118 TGTAAGACCATGTCTGGGACATGGCATC
1 TGTAAGA-CATGTCTGGGACAT-GCATC
51457146 TACTTGAGAT
Statistics
Matches: 137, Mismatches: 25, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
46 68 0.50
47 45 0.33
48 24 0.18
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCAGCCACGAGATGAAAGCCAG
Found at i:51457037 original size:47 final size:47
Alignment explanation
Indices: 51456932--51457195 Score: 229
Period size: 47 Copynumber: 5.7 Consensus size: 47
51456922 TGTGAGCTAA
* * *** *
51456932 TGTAAGA-CATGTCTGGGACAT-GCATCAGCCACCTTATGAAAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATC-GACTCGAGATGAGAGCCAG
* * * *
51456978 TGTAAGACCATGTCTGGGATATGGCATCGACATTGAGACGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGAC-TCGAGATGAGAGCCAG
* *
51457026 TGTAAG-TCATGTCTGGGACAT-GCATCAGCCTCGAGATGTA-AGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATC-GACTCGAGATG-AGAGCCAG
* * *
51457072 TGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGATAGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACT-CGAGATGAGAGCCAG
* *
51457118 TGTAAGACCATGTCTGGGACATGGCATCTACTTGAGAT-ATGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACTCGAGATGA-GAGCCAG
* * * *
51457165 TATAAGACCATGTCTAGGATATGACATCGAC
1 TGTAAGACCATGTCTGGGACATGGCATCGAC
51457196 ACCTTACCCA
Statistics
Matches: 179, Mismatches: 28, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
45 4 0.02
46 68 0.38
47 81 0.45
48 26 0.15
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACTCGAGATGAGAGCCAG
Found at i:51457145 original size:94 final size:93
Alignment explanation
Indices: 51456925--51457196 Score: 293
Period size: 94 Copynumber: 2.9 Consensus size: 93
51456915 AATTGTGTGT
* * *** *
51456925 GAGCTAATGTAAGACATGTCTGGGACATGCATCAGCCACCTTATGAAAGCCAGTGTAAGACCATG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTAAGCCAGTGTAAGACCATG
*
51456990 TCTGGGATATGGCATCGACATTGAGACGA
66 TCTGGGATAT-GCATCGACATCGAGACGA
*
51457019 GAGCTAGTGTAAGTCATGTCTGGGACATGCATCAGCCTCGAGATGTAAGCCAGTGTAAGA-CATG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTAAGCCAGTGTAAGACCATG
* * *
51457083 TCTGGGACATGCATCGGC-TACGAGATGA
66 TCTGGGATATGCATCGACAT-CGAGACGA
* * * * *
51457111 TAG-TCAGTGTAAGACCATGTCTGGGACATGGCATCTA--CTTGAGATATGAGCCAGTATAAGAC
1 GAGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATC-AGCCTCGAGATGTAAGCCAGTGTAAGAC
*
51457173 CATGTCTAGGATATGACATCGACA
62 CATGTCTGGGATATG-CATCGACA
51457197 CCTTACCCAC
Statistics
Matches: 150, Mismatches: 20, Indels: 14
0.82 0.11 0.08
Matches are distributed among these distances:
91 2 0.01
92 23 0.15
93 47 0.31
94 71 0.47
95 7 0.05
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (93 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTAAGCCAGTGTAAGACCATG
TCTGGGATATGCATCGACATCGAGACGA
Found at i:51459386 original size:21 final size:20
Alignment explanation
Indices: 51459358--51459396 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
51459348 TAGTACATGG
* *
51459358 CCTAACCACATGGGTGTGCC
1 CCTAACCAAACGGGTGTGCC
51459378 CCTAGACCAAACGGGTGTG
1 CCTA-ACCAAACGGGTGTG
51459397 TGAGCCTTGC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (20 bp):
CCTAACCAAACGGGTGTGCC
Found at i:51462155 original size:11 final size:11
Alignment explanation
Indices: 51462139--51462172 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
51462129 ATGTCAAATC
*
51462139 ATCAAGAATAA
1 ATCAAGAACAA
51462150 ATCAAGAACAA
1 ATCAAGAACAA
51462161 ATCAAGAACAA
1 ATCAAGAACAA
51462172 A
1 A
51462173 ACTAGATGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.65, C:0.15, G:0.09, T:0.12
Consensus pattern (11 bp):
ATCAAGAACAA
Found at i:51467382 original size:11 final size:11
Alignment explanation
Indices: 51467366--51467400 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
51467356 CATGTCAAAT
51467366 AATCAAGAATA
1 AATCAAGAATA
*
51467377 AATCAAGAACA
1 AATCAAGAATA
51467388 AATCAAGAATA
1 AATCAAGAATA
51467399 AA
1 AA
51467401 ACTAGATGCG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.66, C:0.11, G:0.09, T:0.14
Consensus pattern (11 bp):
AATCAAGAATA
Found at i:51469532 original size:10 final size:10
Alignment explanation
Indices: 51469519--51469543 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
51469509 CTTAATTTGG
51469519 TATTTATTGT
1 TATTTATTGT
51469529 TATTTATTGT
1 TATTTATTGT
51469539 TATTT
1 TATTT
51469544 GGTGTTAGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.08, T:0.72
Consensus pattern (10 bp):
TATTTATTGT
Found at i:51469929 original size:162 final size:162
Alignment explanation
Indices: 51469662--51469970 Score: 442
Period size: 162 Copynumber: 1.9 Consensus size: 162
51469652 AAAATTATGA
* *
51469662 TTTTAATTATTAAATTGATATTTAAGATTGCTGGTCACCTTATTTAAATTTTTAAATAAACAATT
1 TTTTAATGATTAAATTGATATTTAAGATTGCTGGTCACCTTATTTAAATTGTTAAATAAACAATT
* *
51469727 TAAAGGTGGTCGAATCAGGTACATTTCGAGCCTAACTAATTAGCATGAATACAAAACTAGTATGG
66 TAAAAGTGGTCGAATCAGGTACATTTCGAGCCTAACTAATTAGCATGAATACAAAACTAGTATAG
51469792 TTGACCAAATAATTGTACGCTGATATTTATAC
131 TTGACCAAATAATTGTACGCTGATATTTATAC
* *** * ***
51469824 TTTTAATGATTAAATTGATATTTAAGCTTG-TGGGTTGGCTTATTTCAATTGTTAAATAAGTGAT
1 TTTTAATGATTAAATTGATATTTAAGATTGCT-GGTCACCTTATTTAAATTGTTAAATAAACAAT
* ** *
51469888 TTAAAAGTGG-CTGAATTAGGTATGTTTTGAGCCTAACTAATTAGCATGAATACAAAACTAGTAT
65 TTAAAAGTGGTC-GAATCAGGTACATTTCGAGCCTAACTAATTAGCATGAATACAAAACTAGTAT
51469952 AGTTGACCAAATAATTGTA
129 AGTTGACCAAATAATTGTA
51469971 TGTTCATATT
Statistics
Matches: 129, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
161 2 0.02
162 127 0.98
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.38
Consensus pattern (162 bp):
TTTTAATGATTAAATTGATATTTAAGATTGCTGGTCACCTTATTTAAATTGTTAAATAAACAATT
TAAAAGTGGTCGAATCAGGTACATTTCGAGCCTAACTAATTAGCATGAATACAAAACTAGTATAG
TTGACCAAATAATTGTACGCTGATATTTATAC
Found at i:51470931 original size:12 final size:12
Alignment explanation
Indices: 51470899--51470933 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
51470889 CCCCACACAC
*
51470899 CCGTGTGCCAGG
1 CCGTGTGCTAGG
51470911 CCGTGTGCTAGG
1 CCGTGTGCTAGG
51470923 CCGTGTGCTAG
1 CCGTGTGCTAG
51470934 TCCATGTAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.09, C:0.29, G:0.40, T:0.23
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:51474574 original size:27 final size:27
Alignment explanation
Indices: 51474542--51474665 Score: 108
Period size: 27 Copynumber: 4.6 Consensus size: 27
51474532 ATTTGAAAAA
51474542 AGAAGCCTTTGTGGCAATCTATGAAAT
1 AGAAGCCTTTGTGGCAATCTATGAAAT
* * * *
51474569 AGAAGCCTTTATGGAAATCGATGGAAT
1 AGAAGCCTTTGTGGCAATCTATGAAAT
* *
51474596 -GAAAGCTTTTGTGGCAAT-TGTGAAAT
1 AG-AAGCCTTTGTGGCAATCTATGAAAT
* * * *
51474622 AGGAGCTTTTGTGGCAATCCATGGAAAG
1 AGAAGCCTTTGTGGCAATCTAT-GAAAT
* *
51474650 AAAAGCCTTCGTGGCA
1 AGAAGCCTTTGTGGCA
51474666 CATTCTAAAG
Statistics
Matches: 75, Mismatches: 18, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
26 21 0.28
27 38 0.51
28 16 0.21
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (27 bp):
AGAAGCCTTTGTGGCAATCTATGAAAT
Found at i:51474655 original size:54 final size:54
Alignment explanation
Indices: 51474540--51474665 Score: 148
Period size: 53 Copynumber: 2.4 Consensus size: 54
51474530 ACATTTGAAA
*
51474540 AAAG-AAGCCTTTGTGGCAATCTATGAAATAGAAGCCTTTATGGAAATCGATGG
1 AAAGAAAGCCTTTGTGGCAATCTATGAAATAGAAGCCTTTATGGAAATCCATGG
* * * * * * *
51474593 AATGAAAGCTTTTGTGGCAAT-TGTGAAATAGGAGCTTTTGTGGCAATCCATGG
1 AAAGAAAGCCTTTGTGGCAATCTATGAAATAGAAGCCTTTATGGAAATCCATGG
*
51474646 AAAGAAAAGCCTTCGTGGCA
1 AAAG-AAAGCCTTTGTGGCA
51474666 CATTCTAAAG
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
53 32 0.53
54 28 0.47
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.27
Consensus pattern (54 bp):
AAAGAAAGCCTTTGTGGCAATCTATGAAATAGAAGCCTTTATGGAAATCCATGG
Found at i:51483637 original size:69 final size:69
Alignment explanation
Indices: 51483526--51483663 Score: 249
Period size: 69 Copynumber: 2.0 Consensus size: 69
51483516 GTAACGTTAG
* * *
51483526 TAGTAATATTAGAATGATTCTAATGTTACAAACAATGAGTGGCATCTAGCAATGCATCATTGCTG
1 TAGTAATATTAGAACGATTCTAATGTTACAAAAAATGAGTGGCATCTAGCAATGCATCATTGCTA
51483591 CCTA
66 CCTA
51483595 TAGTAATATTAGAACGATTCTAATGTTACAAAAAATGAGTGGCATCTAGCAATGCATCATTGCTA
1 TAGTAATATTAGAACGATTCTAATGTTACAAAAAATGAGTGGCATCTAGCAATGCATCATTGCTA
51483660 CCTA
66 CCTA
51483664 AGTTAAGAGA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 66 1.00
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (69 bp):
TAGTAATATTAGAACGATTCTAATGTTACAAAAAATGAGTGGCATCTAGCAATGCATCATTGCTA
CCTA
Found at i:51486856 original size:15 final size:15
Alignment explanation
Indices: 51486836--51486866 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
51486826 TGAAGACTAG
51486836 TAGAAGATGCATGGA
1 TAGAAGATGCATGGA
51486851 TAGAAGATGCATGGA
1 TAGAAGATGCATGGA
51486866 T
1 T
51486867 GACAAGCTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.23
Consensus pattern (15 bp):
TAGAAGATGCATGGA
Found at i:51487915 original size:26 final size:26
Alignment explanation
Indices: 51487856--51487917 Score: 83
Period size: 24 Copynumber: 2.5 Consensus size: 26
51487846 ATTTTGAAGT
51487856 TTAAAAAAAAAGAAAAAAATACGAAA
1 TTAAAAAAAAAGAAAAAAATACGAAA
* * *
51487882 TT--AAAAAAATAAAAAAATGCGAGA
1 TTAAAAAAAAAGAAAAAAATACGAAA
51487906 TTAAAAAAAAAG
1 TTAAAAAAAAAG
51487918 TGAAGTGTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
24 21 0.70
26 9 0.30
ACGTcount: A:0.73, C:0.03, G:0.10, T:0.15
Consensus pattern (26 bp):
TTAAAAAAAAAGAAAAAAATACGAAA
Found at i:51488840 original size:27 final size:27
Alignment explanation
Indices: 51488838--51488935 Score: 58
Period size: 30 Copynumber: 3.4 Consensus size: 27
51488828 AAAGAAAAAG
51488838 AAAAGAAAAAATGAGAAAAAGAACACAAG
1 AAAAGAAAAAATGAGAAAAAGAA-A-AAG
* *
51488867 AATAGCAAAAGA-GAGAGAAAAGAAAATTAG
1 AAAAG-AAAAAATGAGA-AAAAGAAAA--AG
* *
51488897 AAAAG--AAAAGGATGAACAAGAAAAAG
1 AAAAGAAAAAATGA-GAAAAAGAAAAAG
51488923 AAAATAGAAAAAA
1 -AAA-AGAAAAAA
51488936 AAAGTTTGAT
Statistics
Matches: 54, Mismatches: 5, Indels: 19
0.69 0.06 0.24
Matches are distributed among these distances:
26 2 0.04
27 6 0.11
28 13 0.24
29 11 0.20
30 22 0.41
ACGTcount: A:0.70, C:0.04, G:0.19, T:0.06
Consensus pattern (27 bp):
AAAAGAAAAAATGAGAAAAAGAAAAAG
Found at i:51488854 original size:21 final size:21
Alignment explanation
Indices: 51488807--51488860 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
51488797 AAATCAATTG
51488807 AGAGAAAAAG-AAAGAAAGGAA
1 AGAGAAAAAGAAAAGAAA-GAA
*
51488828 AAAGAAAAAGAAAAGAAA-AA
1 AGAGAAAAAGAAAAGAAAGAA
51488848 ATGAGAAAAAGAA
1 A-GAGAAAAAGAA
51488861 CACAAGAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 3 0.10
21 19 0.66
22 7 0.24
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (21 bp):
AGAGAAAAAGAAAAGAAAGAA
Found at i:51488933 original size:7 final size:6
Alignment explanation
Indices: 51488809--51488938 Score: 52
Period size: 6 Copynumber: 20.0 Consensus size: 6
51488799 ATCAATTGAG
*
51488809 AGAAAA AGAAAGAA AGGAAAA AGAAAA AGAAAA GAAAAAA TGAGAAAA
1 AGAAAA AG-AA-AA A-GAAAA AGAAAA AGAAAA -AGAAAA --AGAAAA
* * * *
51488857 AGAACACA AG-AAT AGCAAA AGAGAG AG-AAA AGAAAA TTAG-AAA AGAAAA
1 AGAA-A-A AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA --AGAAAA AGAAAA
*
51488906 GGATGAACA AGAAAA AGAAAA TAGAAAA A-AAAA
1 --A-GAAAA AGAAAA AGAAAA -AGAAAA AGAAAA
51488939 GTTTGATTGC
Statistics
Matches: 97, Mismatches: 11, Indels: 33
0.69 0.08 0.23
Matches are distributed among these distances:
5 11 0.11
6 42 0.43
7 22 0.23
8 17 0.18
9 5 0.05
ACGTcount: A:0.72, C:0.03, G:0.20, T:0.05
Consensus pattern (6 bp):
AGAAAA
Found at i:51499511 original size:28 final size:28
Alignment explanation
Indices: 51499479--51499548 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
51499469 ATAGTAAGTC
51499479 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
51499507 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
51499535 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51499549 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:51507300 original size:28 final size:28
Alignment explanation
Indices: 51507268--51507337 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
51507258 ATAGTAAGTC
51507268 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
51507296 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
51507324 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51507338 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:51512275 original size:48 final size:48
Alignment explanation
Indices: 51512223--51512406 Score: 172
Period size: 48 Copynumber: 3.8 Consensus size: 48
51512213 CGAAATCACT
* *
51512223 TATCGATGCCGAAGCCATATCCCTGATATGGTCTTACACGGGATAGTG
1 TATCGATGCCGAAGCCATATCCCAGACATGGTCTTACACGGGATAGTG
* * * ** *
51512271 TATCGATGCCGATGCCATGTCCCAGACATGGTCTTATACGTAATCACT-
1 TATCGATGCCGAAGCCATATCCCAGACATGGTCTTACACGGGAT-AGTG
* * * ** * * * *
51512319 TATTGACGCTGAAGCCATATCCTTGATATGGTCTTACATGGGATCGCG
1 TATCGATGCCGAAGCCATATCCCAGACATGGTCTTACACGGGATAGTG
* * *
51512367 TATCGATGCTGATGCCATGTCCCAGACATGGTCTTACACG
1 TATCGATGCCGAAGCCATATCCCAGACATGGTCTTACACG
51512407 AGATCTCGTT
Statistics
Matches: 103, Mismatches: 31, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
48 101 0.98
49 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (48 bp):
TATCGATGCCGAAGCCATATCCCAGACATGGTCTTACACGGGATAGTG
Found at i:51512309 original size:96 final size:96
Alignment explanation
Indices: 51512184--51512407 Score: 333
Period size: 96 Copynumber: 2.3 Consensus size: 96
51512174 GACCTCATAT
* *
51512184 CGATTCCATGTCCCAGGA-ATGGTCTTATACGAAATCACTTATCGATGCCGAAGCCATATCCCTG
1 CGATGCCATGTCCCA-GACATGGTCTTATACGAAATCACTTATCGACGCCGAAGCCATATCCCTG
*
51512248 ATATGGTCTTACACGGGATAGTGTATCGATGC
65 ATATGGTCTTACACGGGATAGCGTATCGATGC
* * * *
51512280 CGATGCCATGTCCCAGACATGGTCTTATACGTAATCACTTATTGACGCTGAAGCCATATCCTTGA
1 CGATGCCATGTCCCAGACATGGTCTTATACGAAATCACTTATCGACGCCGAAGCCATATCCCTGA
* *
51512345 TATGGTCTTACATGGGATCGCGTATCGATGC
66 TATGGTCTTACACGGGATAGCGTATCGATGC
* *
51512376 TGATGCCATGTCCCAGACATGGTCTTACACGA
1 CGATGCCATGTCCCAGACATGGTCTTATACGA
51512408 GATCTCGTTA
Statistics
Matches: 115, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
95 2 0.02
96 113 0.98
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.29
Consensus pattern (96 bp):
CGATGCCATGTCCCAGACATGGTCTTATACGAAATCACTTATCGACGCCGAAGCCATATCCCTGA
TATGGTCTTACACGGGATAGCGTATCGATGC
Found at i:51514865 original size:11 final size:11
Alignment explanation
Indices: 51514849--51514883 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
51514839 GGAAGAGAGG
51514849 TTGATTTTTGC
1 TTGATTTTTGC
*
51514860 TTGATTTTAGC
1 TTGATTTTTGC
*
51514871 TTGATTCTTGC
1 TTGATTTTTGC
51514882 TT
1 TT
51514884 AACTGAAGGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.11, C:0.11, G:0.17, T:0.60
Consensus pattern (11 bp):
TTGATTTTTGC
Found at i:51521409 original size:47 final size:47
Alignment explanation
Indices: 51521242--51521414 Score: 151
Period size: 47 Copynumber: 3.7 Consensus size: 47
51521232 ATTTGTGTGC
* * * *
51521242 TAGTGGAAGA-CATGTCTGGGACAT-GCATTGGCCTCGACAT-G-TAAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCA-TCGCCTCGA-GTCGAT-AGT
*
51521288 TAGTGTAAGA-CATGTCTGGGACTTGGCATCTGCCTCGATGTCGATAGT
1 TAGTGTAAGACCATGTCTGGGACATGGCATC-GCCTCGA-GTCGATAGT
* * * *
51521336 CAGTATAAGACCATGTCTGGGACATGGCATCGTCTTGA-TCGATGAGT
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGCCTCGAGTCGAT-AGT
* *
51521383 TAGTGTAAGACCATGTTTGGGCCATGGCATCG
1 TAGTGTAAGACCATGTCTGGGACATGGCATCG
51521415 GTATTATACC
Statistics
Matches: 106, Mismatches: 15, Indels: 11
0.80 0.11 0.08
Matches are distributed among these distances:
46 28 0.26
47 42 0.40
48 16 0.15
49 20 0.19
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (47 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCGCCTCGAGTCGATAGT
Found at i:51530689 original size:18 final size:18
Alignment explanation
Indices: 51530666--51530734 Score: 77
Period size: 18 Copynumber: 3.8 Consensus size: 18
51530656 AGGATGTGTC
51530666 ATTCATTTTCAAAACGTT
1 ATTCATTTTCAAAACGTT
* *
51530684 ATTCATTATCAAAAAGTT
1 ATTCATTTTCAAAACGTT
* *
51530702 ATAC-TCTTTCAAAACATT
1 ATTCAT-TTTCAAAACGTT
*
51530720 ATTAATTTTCAAAAC
1 ATTCATTTTCAAAAC
51530735 ATCACTTATT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
17 1 0.02
18 39 0.95
19 1 0.02
ACGTcount: A:0.41, C:0.16, G:0.03, T:0.41
Consensus pattern (18 bp):
ATTCATTTTCAAAACGTT
Found at i:51531804 original size:17 final size:18
Alignment explanation
Indices: 51531767--51531804 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
51531757 CCCAAAATTT
*
51531767 CCACACGCTCGTGTGGGC
1 CCACACGCCCGTGTGGGC
*
51531785 CCACACGCCCTTGT-GGC
1 CCACACGCCCGTGTGGGC
51531802 CCA
1 CCA
51531805 TACGACCCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.13, C:0.45, G:0.26, T:0.16
Consensus pattern (18 bp):
CCACACGCCCGTGTGGGC
Found at i:51532730 original size:24 final size:22
Alignment explanation
Indices: 51532686--51532732 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
51532676 AACTCTAAAC
* *
51532686 ATATCCCTAAAAATTCTCCACA
1 ATATCCCCAAAAATTCGCCACA
51532708 ATATCCTCCAAAAATTCGGCCACA
1 ATATCC-CCAAAAATTC-GCCACA
51532732 A
1 A
51532733 CAACCCCACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 6 0.29
23 9 0.43
24 6 0.29
ACGTcount: A:0.40, C:0.32, G:0.04, T:0.23
Consensus pattern (22 bp):
ATATCCCCAAAAATTCGCCACA
Found at i:51535270 original size:6 final size:6
Alignment explanation
Indices: 51535252--51535388 Score: 120
Period size: 6 Copynumber: 22.3 Consensus size: 6
51535242 AAGAAACATT
*
51535252 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATTAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
51535299 GTCACAGA ATCAGA ATCAGA ATCAGA ATCAGT ATCAGGTA A-CCGA ATCAAA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* *
51535350 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
51535389 GTGAATGCAA
Statistics
Matches: 106, Mismatches: 14, Indels: 22
0.75 0.10 0.15
Matches are distributed among these distances:
5 6 0.06
6 89 0.84
7 8 0.08
8 3 0.03
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:51535310 original size:31 final size:31
Alignment explanation
Indices: 51535272--51535388 Score: 126
Period size: 31 Copynumber: 3.6 Consensus size: 31
51535262 GAATCAGAAT
* *
51535272 CAGAATCAGAATCAGAATCAGAATTAGGTCA
1 CAGAATCAAAATCAGAATCAGAATTAGGTAA
*
51535303 CAGAATCAGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAG-A--A-T-T-AGGTAA
* * *
51535340 CCGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGAATTAGGTAA
51535371 CAGAATCAAAATCAGAAT
1 CAGAATCAAAATCAGAAT
51535389 GTGAATGCAA
Statistics
Matches: 74, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
31 44 0.59
32 1 0.01
33 1 0.01
34 2 0.03
35 1 0.01
36 1 0.01
37 24 0.32
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGAATTAGGTAA
Found at i:51535313 original size:37 final size:37
Alignment explanation
Indices: 51535266--51535388 Score: 150
Period size: 37 Copynumber: 3.5 Consensus size: 37
51535256 GAACTAGAAT
* *
51535266 CAGAATCAGAATCAGAATCAGAATCAGAATTAGGTCA
1 CAGAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
*
51535303 CAGAATCAGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
* *
51535340 C-----C-GAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
*
51535371 CAGAATCAAAATCAGAAT
1 CAGAATCAGAATCAGAAT
51535389 GTGAATGCAA
Statistics
Matches: 74, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
31 29 0.39
32 1 0.01
36 1 0.01
37 43 0.58
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (37 bp):
CAGAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
Found at i:51535548 original size:27 final size:26
Alignment explanation
Indices: 51535508--51535615 Score: 108
Period size: 27 Copynumber: 4.0 Consensus size: 26
51535498 AGCATGACTG
* * * *
51535508 CCAGAATAGATATTGTGACAGAGTCA
1 CCAGAACAAATATTGTGGCAGAGCCA
* *
51535534 CCAGATACATATATTGTGGTAGAGCCA
1 CCAGA-ACAAATATTGTGGCAGAGCCA
*
51535561 CCAGAACAAATATTTGTGGCATAGCCA
1 CCAGAACAAATA-TTGTGGCAGAGCCA
* *
51535588 CCAGAATCAAATAATGTGGCAAAGCCA
1 CCAGAA-CAAATATTGTGGCAGAGCCA
51535615 C
1 C
51535616 TTAACAGAAT
Statistics
Matches: 69, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
26 11 0.16
27 52 0.75
28 6 0.09
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.21
Consensus pattern (26 bp):
CCAGAACAAATATTGTGGCAGAGCCA
Found at i:51536210 original size:27 final size:27
Alignment explanation
Indices: 51536173--51536580 Score: 380
Period size: 27 Copynumber: 15.2 Consensus size: 27
51536163 GGCAAAAAGG
* * *
51536173 GTAATTTTACCCTATAAGGGTATCTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
51536200 GTAATTGTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * * *
51536227 ATATTTCTACCCTACAAGCGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
51536254 GTAATTCTATCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
51536281 GTAATTCTA-CCTCCAGGGGTATTT-T
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
51536306 GATATTTCTACCCTATAAGGGTATTTTA
1 G-TAATTCTACCCTACAAGGGTATTTCA
* * *
51536334 GTATTTCTATCCTAC-AGGGGATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
51536360 ATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
51536387 GTATTTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
51536413 GATATTTCTACGCTACAAGGGTATTTCA
1 G-TAATTCTACCCTACAAGGGTATTTCA
* * *
51536441 GTAATTCTACCC--CTAGGGGCATTTCG
1 GTAATTCTACCCTAC-AAGGGTATTTCA
* **
51536467 GTAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
51536494 GTAATTCTACCCTACAAGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
51536521 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* ***
51536548 GTAATTTTA-TAAATCAAGGGTATTTCA
1 GTAATTCTACCCTA-CAAGGGTATTTCA
51536575 GTAATT
1 GTAATT
51536581 TTACAATTAA
Statistics
Matches: 316, Mismatches: 55, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
25 2 0.01
26 64 0.20
27 247 0.78
28 3 0.01
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:51536330 original size:80 final size:81
Alignment explanation
Indices: 51536172--51536547 Score: 454
Period size: 80 Copynumber: 4.7 Consensus size: 81
51536162 GGGCAAAAAG
* * * * *
51536172 GGTAATTTTACCCTATAAGGGTATCTCAGTAATTGTACCCTACAGGGGTATTTCAATATTTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTAC
*
51536237 CCTACAAGCGTATTTC
66 CCTACAAGGGTATTTC
* * * * *
51536253 GGTAATTCTATCCTATAGGGGTATTTCAGTAATTCTA-CCTCCAGGGGTATTTTGATATTTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTAC
* *
51536317 CCTATAAGGGTATTTT
66 CCTACAAGGGTATTTC
* * * * * *
51536333 AGTATTTCTATCCTAC-AGGGGATTTCAATAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTAC
51536397 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
* * * * * *
51536413 GATATTTCTACGCTACAAGGGTATTTCAGTAATTCTACCC--CTAGGGGCATTTCGGTAATTCTA
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTAC-AGGGGTATTTCGATATTTCTA
* *
51536476 CCCTACAGGGGTATTTT
65 CCCTACAAGGGTATTTC
* *
51536493 GGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCG
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCG
51536548 GTAATTTTAT
Statistics
Matches: 252, Mismatches: 38, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
79 18 0.07
80 170 0.67
81 63 0.25
82 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (81 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTAC
CCTACAAGGGTATTTC
Found at i:51536339 original size:107 final size:108
Alignment explanation
Indices: 51536172--51536546 Score: 429
Period size: 107 Copynumber: 3.5 Consensus size: 108
51536162 GGGCAAAAAG
* * * * * * * *
51536172 GGTAATTTTACCCTATAAGGGTA-TCTCAGTAATTGTACCCTACAGGGGTATTTCAATATTTCTA
1 GGTAATTCTACCCTACAAGGGTATTTTGA-TATTTCTACCCTACAAGGGTATTTCAGTATTTCTA
* * * *
51536236 CCCTACAAGCGTATTTCGGTAATTCTATCCTATAGGGGTATTTC
65 CCCTACAAGGGCATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * * * *
51536280 AGTAATTCTA-CCTCCAGGGGTATTTTGATATTTCTACCCTATAAGGGTATTTTAGTATTTCTAT
1 GGTAATTCTACCCTACAAGGGTATTTTGATATTTCTACCCTACAAGGGTATTTCAGTATTTCTAC
* **
51536344 CCTAC-AGGGGATTTCAATAATTCTACCCTACAGGGGTATTTC
66 CCTACAAGGGCATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * *
51536386 GGTATTTCTACCCTACAAGGGTATTTCGATATTTCTACGCTACAAGGGTATTTCAGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTTGATATTTCTACCCTACAAGGGTATTTCAGTATTTCTAC
* *
51536451 CC--CTAGGGGCATTTCGGTAATTCTACCCTACAGGGGTATTTT
66 CCTAC-AAGGGCATTTCGGTAATTCTACCCTACAGGGGTATTTC
*
51536493 GGTAATTCTACCCTACAAGGGTATTTT-AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTTGA-TATTTCTACCCTACAAGGGTATTTC
51536547 GGTAATTTTA
Statistics
Matches: 223, Mismatches: 39, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
105 1 0.00
106 40 0.18
107 171 0.77
108 11 0.05
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (108 bp):
GGTAATTCTACCCTACAAGGGTATTTTGATATTTCTACCCTACAAGGGTATTTCAGTATTTCTAC
CCTACAAGGGCATTTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:51536581 original size:27 final size:27
Alignment explanation
Indices: 51536535--51536720 Score: 151
Period size: 27 Copynumber: 7.0 Consensus size: 27
51536525 TTCTACCCTA
51536535 CAAGGGTATTTCGGTAATTTTATAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
* *
51536562 CAAGGGTATTTCAGTAATTTTA-CAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
* * * *
51536588 TAACGATATTTCGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
* * * *
51536615 CGAGGATATTTGGGTAATTTTATAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAT
* * * * *
51536642 CTAGGGTACTTGGGTAATTTTACAAGT
1 CAAGGGTATTTCGGTAATTTTATAAAT
* ** *
51536669 CGAGGGTATTTTAGTAATTTTA-CAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
* * * *
51536695 CGACGATATTTCAGTAATTTTATAAA
1 CAAGGGTATTTCGGTAATTTTATAAA
51536721 CTGGGGGTAC
Statistics
Matches: 128, Mismatches: 29, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
26 42 0.33
27 86 0.67
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTATAAAT
Found at i:51536625 original size:134 final size:134
Alignment explanation
Indices: 51536361--51536633 Score: 293
Period size: 134 Copynumber: 2.0 Consensus size: 134
51536351 GGGATTTCAA
* * * ***
51536361 TAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGATATTTCTACGC
1 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATATTTCTAAAA
** ** * ** *
51536426 TACAAGGGTATTTCAGTAATTCTACCCCTAGGGGCATTTCGGTAATTCTACCCTACAGGGGTATT
66 TACAAGGGTATTTCAGTAATTCTACAACTAACGACATTTCGGTAATTCTACAATACAGGGATATT
*
51536491 TTGG
131 TGGG
* *
51536495 TAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCGGTAATTT-TATA
1 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGAT-ATTTCTA-A
* * * *
51536559 AAT-CAAGGGTATTTCAGTAATTTTACAATTAACGATATTTCGGTAATTTTACAA-ATC-GAGGA
64 AATACAAGGGTATTTCAGTAATTCTACAACTAACGACATTTCGGTAATTCTACAATA-CAG-GGA
51536621 TATTTGGG
127 TATTTGGG
51536629 TAATT
1 TAATT
51536634 TTATAAACCT
Statistics
Matches: 114, Mismatches: 21, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
133 2 0.02
134 107 0.94
135 5 0.04
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (134 bp):
TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATATTTCTAAAA
TACAAGGGTATTTCAGTAATTCTACAACTAACGACATTTCGGTAATTCTACAATACAGGGATATT
TGGG
Found at i:51536634 original size:80 final size:80
Alignment explanation
Indices: 51536541--51536746 Score: 225
Period size: 80 Copynumber: 2.6 Consensus size: 80
51536531 CCTACAAGGG
* * * *
51536541 TATTTCGGTAATTTTATAAATCAAGGGTATTTCAGTAATTTTACAA-TTAACGATATTTCGGTAA
1 TATTTCGGTAATTTTATAAACCAAGGGTACTTCAGTAATTTTACAAGTCAACGATATTTCAGTAA
*
51536605 TTTTACAAATCGAGGA
66 TTTTAC-AATCGACGA
* * ** * * * *
51536621 TATTTGGGTAATTTTATAAACCTAGGGTACTTGGGTAATTTTACAAGTCGAGGGTATTTTAGTAA
1 TATTTCGGTAATTTTATAAACCAAGGGTACTTCAGTAATTTTACAAGTCAACGATATTTCAGTAA
51536686 TTTTACAATCGACGA
66 TTTTACAATCGACGA
* *** **
51536701 TATTTCAGTAATTTTATAAACTGGGGGTACTTTGGTAATTTTACAA
1 TATTTCGGTAATTTTATAAACCAAGGGTACTTCAGTAATTTTACAA
51536747 CTGGGGGTAT
Statistics
Matches: 106, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 88 0.83
81 18 0.17
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (80 bp):
TATTTCGGTAATTTTATAAACCAAGGGTACTTCAGTAATTTTACAAGTCAACGATATTTCAGTAA
TTTTACAATCGACGA
Found at i:51536753 original size:27 final size:27
Alignment explanation
Indices: 51536601--51536767 Score: 105
Period size: 27 Copynumber: 6.3 Consensus size: 27
51536591 CGATATTTCG
* * *
51536601 GTAATTTTACAAATCGAGGATA-TTTGG
1 GTAATTTTACAACTCGAGGGTACTTT-A
* * **
51536628 GTAATTTTATAAAC-CTAGGGTACTTGG
1 GTAATTTTA-CAACTCGAGGGTACTTTA
* *
51536655 GTAATTTTACAAGTCGAGGGTATTTTA
1 GTAATTTTACAACTCGAGGGTACTTTA
* *
51536682 GTAATTTTACAA-TCGACGATA-TTTCA
1 GTAATTTTACAACTCGAGGGTACTTT-A
* * *
51536708 GTAATTTTATAAACT-GGGGGTACTTTG
1 GTAATTTTA-CAACTCGAGGGTACTTTA
*
51536735 GTAATTTTACAACT-GGGGGTA-TTTCA
1 GTAATTTTACAACTCGAGGGTACTTT-A
51536761 GTAATTT
1 GTAATTT
51536768 GGTAAACTAA
Statistics
Matches: 112, Mismatches: 20, Indels: 17
0.75 0.13 0.11
Matches are distributed among these distances:
25 6 0.05
26 37 0.33
27 61 0.54
28 8 0.07
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAACTCGAGGGTACTTTA
Found at i:51536775 original size:27 final size:25
Alignment explanation
Indices: 51536701--51536767 Score: 82
Period size: 26 Copynumber: 2.6 Consensus size: 25
51536691 CAATCGACGA
51536701 TATTTCAGTAATTTTATAAACTGGGGG
1 TATTTCAGTAA-TTT-TAAACTGGGGG
*
51536728 TACTTT-GGTAATTTTACAACTGGGGG
1 TA-TTTCAGTAATTTTA-AACTGGGGG
51536754 TATTTCAGTAATTT
1 TATTTCAGTAATTT
51536768 GGTAAACTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
25 5 0.14
26 21 0.60
27 6 0.17
28 3 0.09
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.43
Consensus pattern (25 bp):
TATTTCAGTAATTTTAAACTGGGGG
Found at i:51537665 original size:40 final size:40
Alignment explanation
Indices: 51537610--51537693 Score: 161
Period size: 40 Copynumber: 2.1 Consensus size: 40
51537600 GGTGTTACAC
51537610 CTCTACCTCCCTTAAAGAAATTTCGTCCCTGAAATTTCCG
1 CTCTACCTCCCTTAAAGAAATTTCGTCCCTGAAATTTCCG
51537650 CTCTACCTCCCTTAAAGAAATTTCGTCCCTGAAATTTCCG
1 CTCTACCTCCCTTAAAGAAATTTCGTCCCTGAAATTTCCG
51537690 -TCTA
1 CTCTA
51537694 ATAGGGTAGT
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
39 4 0.09
40 40 0.91
ACGTcount: A:0.25, C:0.32, G:0.10, T:0.33
Consensus pattern (40 bp):
CTCTACCTCCCTTAAAGAAATTTCGTCCCTGAAATTTCCG
Found at i:51540560 original size:27 final size:27
Alignment explanation
Indices: 51540522--51540646 Score: 178
Period size: 27 Copynumber: 4.6 Consensus size: 27
51540512 NNNNNNNNNN
51540522 GATTTACAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACTGTTTTACCCTC
* *
51540549 GATTTATAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACTGTTTTACCCTC
* * *
51540576 GATTTACAAAATTACTGTTTTACCATT
1 GATTTACAGAATTACTGTTTTACCCTC
* *
51540603 GATTTATAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACTGTTTTACCCTC
*
51540630 GATTTACAAAATTACTG
1 GATTTACAGAATTACTG
51540647 AAATACCCTT
Statistics
Matches: 83, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 83 1.00
ACGTcount: A:0.30, C:0.19, G:0.10, T:0.41
Consensus pattern (27 bp):
GATTTACAGAATTACTGTTTTACCCTC
Found at i:51540653 original size:27 final size:27
Alignment explanation
Indices: 51540522--51540673 Score: 169
Period size: 27 Copynumber: 5.6 Consensus size: 27
51540512 NNNNNNNNNN
* *
51540522 GATTTACAGAATTACTGTTTTACCCTC
1 GATTTACAAAATTACCGTTTTACCCTC
* *
51540549 GATTTATAGAATTACCGTTTTACCCTC
1 GATTTACAAAATTACCGTTTTACCCTC
* * *
51540576 GATTTACAAAATTACTGTTTTACCATT
1 GATTTACAAAATTACCGTTTTACCCTC
* *
51540603 GATTTATAGAATTACCGTTTTACCCTC
1 GATTTACAAAATTACCGTTTTACCCTC
* *** *
51540630 GATTTACAAAATTACTGAAATACCCTT
1 GATTTACAAAATTACCGTTTTACCCTC
*
51540657 GGTTTACAAAATTACCG
1 GATTTACAAAATTACCG
51540674 AAATACCCCT
Statistics
Matches: 104, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 104 1.00
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.39
Consensus pattern (27 bp):
GATTTACAAAATTACCGTTTTACCCTC
Found at i:51540663 original size:81 final size:81
Alignment explanation
Indices: 51540522--51540671 Score: 210
Period size: 81 Copynumber: 1.9 Consensus size: 81
51540512 NNNNNNNNNN
* * * ***
51540522 GATTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAA
1 GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGAAATACCCTCGATTTACAAAA
51540587 TTACTGTTTTACCATT
66 TTACTGTTTTACCATT
* * * *
51540603 GATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTGAAATACCCTTGGTTTACAAAA
1 GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGAAATACCCTCGATTTACAAAA
51540668 TTAC
66 TTAC
51540672 CGAAATACCC
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 59 1.00
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.39
Consensus pattern (81 bp):
GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGAAATACCCTCGATTTACAAAA
TTACTGTTTTACCATT
Found at i:51540670 original size:54 final size:54
Alignment explanation
Indices: 51540522--51540673 Score: 223
Period size: 54 Copynumber: 2.8 Consensus size: 54
51540512 NNNNNNNNNN
* *
51540522 GATTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC
1 GATTTACAAAATTACTGTTTTACCCTTGATTTATAGAATTACCGTTTTACCCTC
*
51540576 GATTTACAAAATTACTGTTTTACCATTGATTTATAGAATTACCGTTTTACCCTC
1 GATTTACAAAATTACTGTTTTACCCTTGATTTATAGAATTACCGTTTTACCCTC
*** * * *
51540630 GATTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTACCG
1 GATTTACAAAATTACTGTTTTACCCTTGATTTATAGAATTACCG
51540674 AAATACCCCT
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 88 1.00
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.39
Consensus pattern (54 bp):
GATTTACAAAATTACTGTTTTACCCTTGATTTATAGAATTACCGTTTTACCCTC
Found at i:51540696 original size:27 final size:27
Alignment explanation
Indices: 51540666--51540861 Score: 275
Period size: 27 Copynumber: 7.3 Consensus size: 27
51540656 TGGTTTACAA
51540666 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
51540693 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
51540720 AAATACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
51540747 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
51540774 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
51540801 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
51540828 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
51540855 AATTACC
1 AATTACC
51540862 ATTTTGCCCC
Statistics
Matches: 149, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 149 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:51540697 original size:54 final size:51
Alignment explanation
Indices: 51540639--51540860 Score: 230
Period size: 54 Copynumber: 4.1 Consensus size: 51
51540629 CGATTTACAA
* *
51540639 AATTACTGAAATACCCTTGGTTTACAAAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGG-GTA-GAAA-TACCGAAATACCCCTGTAGGGTAG
**
51540693 AATTACTGAAATACCCCTGTAGGGTAGAAATACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATA-CCCT-T-GGGTAGAAATACCGAAATACCCCTGTAGGGTAG
51540747 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCC-T-T-GGGTAGAAATACCGAAATACCCCTGTAGGGTAG
* * * * * *
51540801 AATTACTAAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATA-CCCT-T-GGGTAGAAATACCGAAATACCCCTGTAGGGTAG
51540855 AATTAC
1 AATTAC
51540861 CATTTTGCCC
Statistics
Matches: 149, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
53 4 0.03
54 129 0.87
55 11 0.07
56 3 0.02
57 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.26
Consensus pattern (51 bp):
AATTACTGAAATACCCTTGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
Found at i:51540872 original size:81 final size:81
Alignment explanation
Indices: 51540666--51540857 Score: 314
Period size: 81 Copynumber: 2.4 Consensus size: 81
51540656 TGGTTTACAA
* * *
51540666 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAAATACTAAAA
1 AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACTAAAA
51540731 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* *
51540747 AATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTAAAA
1 AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACTAAAA
51540812 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* *
51540828 AATTACCGAGATACCCTTGTGGGGTA-AAAT
1 AATTACCGAAATACCCTTGTAGGGTAGAAAT
51540858 TACCATTTTG
Statistics
Matches: 103, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
80 4 0.04
81 99 0.96
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.24
Consensus pattern (81 bp):
AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACTAAAA
TACCCCTGTAGGGTAG
Found at i:51541773 original size:18 final size:17
Alignment explanation
Indices: 51541745--51541778 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
51541735 GGCTTTAACC
51541745 CATTACAGAATAAGAAA
1 CATTACAGAATAAGAAA
*
51541762 CATTATCAGAATCAGAA
1 CATTA-CAGAATAAGAA
51541779 TCAGAATCAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.15, G:0.12, T:0.21
Consensus pattern (17 bp):
CATTACAGAATAAGAAA
Found at i:51541775 original size:6 final size:6
Alignment explanation
Indices: 51541766--51542020 Score: 189
Period size: 6 Copynumber: 41.3 Consensus size: 6
51541756 AAGAAACATT
* * *
51541766 ATCAGA ATCAGA ATCAGA ATCAGA ATTAGA ATTA-A GTCACAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
51541815 ATCAGA ATCAGT ATCAGGTA A-CCGA ATCAAA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* **
51541866 A-CAGA ATCAAA ATCAGA ATGTGA ATCTAGA ATCAGA ATCAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA
* * * *
51541914 ATCAGA ATCAGA ATTAGA ATTAG- GTCACAGA ATCAGA ATCAGA ATCAGT
1 ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA
* * * *
51541963 ATCAGGTA A-CCGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
51542013 ATCAGA AT
1 ATCAGA AT
51542021 GTGAATGCAA
Statistics
Matches: 198, Mismatches: 32, Indels: 38
0.74 0.12 0.14
Matches are distributed among these distances:
5 11 0.06
6 162 0.82
7 18 0.09
8 7 0.04
ACGTcount: A:0.47, C:0.16, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:51541849 original size:37 final size:36
Alignment explanation
Indices: 51541808--51542020 Score: 181
Period size: 31 Copynumber: 6.2 Consensus size: 36
51541798 TAAGTCACAG
*
51541808 AATCAGAATCAGAATCAGTATCAGGTAACCGAATC-
1 AATCAGAATCAGAATCAGTATCAGGTAACAGAATCA
51541843 -A--A-AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGAATCAGTATCAGGTAACAGAATC-A
** *
51541876 AATCAGAATGTGAATCTAGAATCA-G-AATCAGAATCA
1 AATCAGAATCAGAATC-AGTATCAGGTAA-CAGAATCA
* * * *
51541912 GAATCAGAATCAGAATTAGAATTAGGTCACAG-----
1 -AATCAGAATCAGAATCAGTATCAGGTAACAGAATCA
*
51541944 AATCAGAATCAGAATCAGTATCAGGTAACCGAATC-
1 AATCAGAATCAGAATCAGTATCAGGTAACAGAATCA
51541979 -A--A-AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGAATCAGTATCAGGTAACAGAATC-A
51542012 AATCAGAAT
1 AATCAGAAT
51542021 GTGAATGCAA
Statistics
Matches: 142, Mismatches: 15, Indels: 40
0.72 0.08 0.20
Matches are distributed among these distances:
31 82 0.58
32 2 0.01
34 4 0.03
36 11 0.08
37 36 0.25
38 7 0.05
ACGTcount: A:0.47, C:0.16, G:0.17, T:0.20
Consensus pattern (36 bp):
AATCAGAATCAGAATCAGTATCAGGTAACAGAATCA
Found at i:51542001 original size:136 final size:136
Alignment explanation
Indices: 51541766--51542026 Score: 513
Period size: 136 Copynumber: 1.9 Consensus size: 136
51541756 AAGAAACATT
51541766 ATCAGAATCAGAATCAGAATCAGAATTAGAATTAAGTCACAGAATCAGAATCAGAATCAGTATCA
1 ATCAGAATCAGAATCAGAATCAGAATTAGAATTAAGTCACAGAATCAGAATCAGAATCAGTATCA
51541831 GGTAACCGAATCAAAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAATGTGAATCTAGA
66 GGTAACCGAATCAAAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAATGTGAATCTAGA
51541896 ATCAGA
131 ATCAGA
*
51541902 ATCAGAATCAGAATCAGAATCAGAATTAGAATTAGGTCACAGAATCAGAATCAGAATCAGTATCA
1 ATCAGAATCAGAATCAGAATCAGAATTAGAATTAAGTCACAGAATCAGAATCAGAATCAGTATCA
51541967 GGTAACCGAATCAAAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAATGTGAAT
66 GGTAACCGAATCAAAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAATGTGAAT
51542027 GCAATCCCAC
Statistics
Matches: 124, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
136 124 1.00
ACGTcount: A:0.47, C:0.15, G:0.17, T:0.21
Consensus pattern (136 bp):
ATCAGAATCAGAATCAGAATCAGAATTAGAATTAAGTCACAGAATCAGAATCAGAATCAGTATCA
GGTAACCGAATCAAAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAATGTGAATCTAGA
ATCAGA
Found at i:51542075 original size:81 final size:81
Alignment explanation
Indices: 51541982--51542140 Score: 309
Period size: 81 Copynumber: 2.0 Consensus size: 81
51541972 CCGAATCAAA
*
51541982 ATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAATGTGAATGCAATCCCACCCCAATCCAG
1 ATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAATGTGAATGCAATCCCAACCCAATCCAG
51542047 CCGTATACACCTTAAT
66 CCGTATACACCTTAAT
51542063 ATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAATGTGAATGCAATCCCAACCCAATCCAG
1 ATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAATGTGAATGCAATCCCAACCCAATCCAG
51542128 CCGTATACACCTT
66 CCGTATACACCTT
51542141 CGTACCAACC
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.40, C:0.26, G:0.14, T:0.21
Consensus pattern (81 bp):
ATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAATGTGAATGCAATCCCAACCCAATCCAG
CCGTATACACCTTAAT
Found at i:51542250 original size:26 final size:26
Alignment explanation
Indices: 51542221--51542328 Score: 108
Period size: 27 Copynumber: 4.0 Consensus size: 26
51542211 AGCATGACTG
* * *
51542221 CCAGAATAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
*
51542247 CCAGATACAGATATTGTGGTAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
* *
51542274 CCAGAACAAATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
* * *
51542301 CCAGAATAAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGGCAGAGCCA
51542328 C
1 C
51542329 TTAACAGAAT
Statistics
Matches: 68, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
26 11 0.16
27 53 0.78
28 4 0.06
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:51542411 original size:32 final size:31
Alignment explanation
Indices: 51542342--51542417 Score: 80
Period size: 32 Copynumber: 2.4 Consensus size: 31
51542332 ACAGAATACG
* *
51542342 TGGCACAAAGCCATCAATAACTGTAATAACT
1 TGGCACAAAGCCATCAATAACGGTAATAAAT
* * *
51542373 TGGGCACATAGCCATCAGTGACGGTAATATAAT
1 T-GGCACAAAGCCATCAATAACGGTAATA-AAT
*
51542406 TGGCACACAGCC
1 TGGCACAAAGCC
51542418 TTCGGTAAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
31 1 0.03
32 33 0.89
33 3 0.08
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.21
Consensus pattern (31 bp):
TGGCACAAAGCCATCAATAACGGTAATAAAT
Found at i:51544139 original size:25 final size:25
Alignment explanation
Indices: 51544105--51544160 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
51544095 ATCCTGGCAG
51544105 TTGCGGAAGCTTAATTTAAGAACAA
1 TTGCGGAAGCTTAATTTAAGAACAA
51544130 TTGCGGAAGCTTAATTTAAGAACAA
1 TTGCGGAAGCTTAATTTAAGAACAA
51544155 TTGCGG
1 TTGCGG
51544161 TTACGTGATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.29
Consensus pattern (25 bp):
TTGCGGAAGCTTAATTTAAGAACAA
Found at i:51544604 original size:12 final size:12
Alignment explanation
Indices: 51544589--51545467 Score: 218
Period size: 12 Copynumber: 71.2 Consensus size: 12
51544579 AAGAAATATT
51544589 ATCAGAA-CTAGA
1 ATCAGAATC-AGA
51544601 ATCAGAATCAGA
1 ATCAGAATCAGA
*
51544613 ATC--AATTA-A
1 ATCAGAATCAGA
*
51544622 TATCAGAATCAGT
1 -ATCAGAATCAGA
51544635 ATCAGGTAA-CAGA
1 ATCA-G-AATCAGA
* **
51544648 ATCAAAATTGGA
1 ATCAGAATCAGA
* *
51544660 ATCGGTATCAGGTA
1 ATCAGAATCA-G-A
*
51544674 A-CAGAATCAAA
1 ATCAGAATCAGA
*
51544685 ATCAGAATCAGT
1 ATCAGAATCAGA
51544697 ATCAGGTAA-CAGA
1 ATCA-G-AATCAGA
*
51544710 ATCAAAATCAGA
1 ATCAGAATCAGA
*
51544722 ATCAGTATCAGGTA
1 ATCAGAATCA-G-A
*
51544736 A-CAGAATCAAA
1 ATCAGAATCAGA
*
51544747 ATCAGAATCAGT
1 ATCAGAATCAGA
51544759 ATCAGGTAA-CAGA
1 ATCA-G-AATCAGA
* **
51544772 ATCAAAATTGGA
1 ATCAGAATCAGA
* *
51544784 ATCGGTATCAGGTA
1 ATCAGAATCA-G-A
*
51544798 A-CAGAATCAAA
1 ATCAGAATCAGA
*
51544809 ATCAGAATCAGT
1 ATCAGAATCAGA
51544821 ATCAGGTAA-CAGA
1 ATCA-G-AATCAGA
* **
51544834 ATCAAAATTGGA
1 ATCAGAATCAGA
* *
51544846 ATCGGTATCAGGTA
1 ATCAGAATCA-G-A
*
51544860 A-CAGAATCAAA
1 ATCAGAATCAGA
*
51544871 ATCAGAATCAGT
1 ATCAGAATCAGA
51544883 ATCAGGTAA-CAGA
1 ATCA-G-AATCAGA
* **
51544896 ATCAAAATTGGA
1 ATCAGAATCAGA
* *
51544908 ATCGGTATCAGGTA
1 ATCAGAATCA-G-A
*
51544922 A-CAGAATCAAA
1 ATCAGAATCAGA
*
51544933 ATCAGAATCAGT
1 ATCAGAATCAGA
51544945 ATCAGGTAA-CAGA
1 ATCA-G-AATCAGA
* **
51544958 ATCAAAATTGGA
1 ATCAGAATCAGA
* *
51544970 ATCGGTATCAGGTA
1 ATCAGAATCA-G-A
*
51544984 A-CAGAATCAAA
1 ATCAGAATCAGA
*
51544995 ATCAGAATCAGT
1 ATCAGAATCAGA
51545007 ATCAGGTAA-CAGA
1 ATCA-G-AATCAGA
* **
51545020 ATCAAAATTGGA
1 ATCAGAATCAGA
* *
51545032 ATCGGTATCAGGTA
1 ATCAGAATCA-G-A
*
51545046 A-CAGAATCAAA
1 ATCAGAATCAGA
*
51545057 ATCAGAATCAGT
1 ATCAGAATCAGA
51545069 ATCAGGTAA-CAGA
1 ATCA-G-AATCAGA
* **
51545082 ATCAAAATTGGA
1 ATCAGAATCAGA
* *
51545094 ATCGGTATCAGGTA
1 ATCAGAATCA-G-A
*
51545108 A-CAGAATCAAA
1 ATCAGAATCAGA
*
51545119 ATCAGAATCAGT
1 ATCAGAATCAGA
51545131 ATCAGGTAA-CAGA
1 ATCA-G-AATCAGA
* **
51545144 ATCAAAATTGGA
1 ATCAGAATCAGA
* *
51545156 ATCGGTATCAGGTA
1 ATCAGAATCA-G-A
*
51545170 A-CAGAATCAAA
1 ATCAGAATCAGA
*
51545181 ATCAGAATCAGT
1 ATCAGAATCAGA
51545193 ATCAGGTAA-CAGA
1 ATCA-G-AATCAGA
* **
51545206 ATCAAAATTGGA
1 ATCAGAATCAGA
* *
51545218 ATCGGTATCAGGTA
1 ATCAGAATCA-G-A
*
51545232 A-CAGAATCAAA
1 ATCAGAATCAGA
*
51545243 ATCAGAATCAGT
1 ATCAGAATCAGA
51545255 ATCAGGTAA-CAGA
1 ATCA-G-AATCAGA
* **
51545268 ATCAAAATTGGA
1 ATCAGAATCAGA
* *
51545280 ATCGGTATCAGGTA
1 ATCAGAATCA-G-A
*
51545294 A-CAGAATCAAA
1 ATCAGAATCAGA
*
51545305 ATCAGAATCAGT
1 ATCAGAATCAGA
51545317 ATCAGGTAA-CAGA
1 ATCA-G-AATCAGA
* **
51545330 ATCAAAATTGGA
1 ATCAGAATCAGA
* *
51545342 ATCGGTATCAGGTA
1 ATCAGAATCA-G-A
*
51545356 A-CAGAATCAAA
1 ATCAGAATCAGA
*
51545367 ATCAGAATCAGT
1 ATCAGAATCAGA
51545379 ATCAGGTAA-CAGA
1 ATCA-G-AATCAGA
* **
51545392 ATCAAAATTGGA
1 ATCAGAATCAGA
* *
51545404 ATCGGTATCAGGTA
1 ATCAGAATCA-G-A
*
51545418 A-CAGAATCAAA
1 ATCAGAATCAGA
*
51545429 ATCAGAATCAGT
1 ATCAGAATCAGA
51545441 ATCAGGTAA-CAGA
1 ATCA-G-AATCAGA
*
51545454 ATCAAAATCAGA
1 ATCAGAATCAGA
51545466 AT
1 AT
51545468 GTGTATGCAA
Statistics
Matches: 600, Mismatches: 181, Indels: 172
0.63 0.19 0.18
Matches are distributed among these distances:
9 1 0.00
10 7 0.01
11 54 0.09
12 279 0.47
13 205 0.34
14 54 0.09
ACGTcount: A:0.46, C:0.15, G:0.19, T:0.21
Consensus pattern (12 bp):
ATCAGAATCAGA
Found at i:51544668 original size:31 final size:31
Alignment explanation
Indices: 51544623--51545467 Score: 1366
Period size: 31 Copynumber: 27.3 Consensus size: 31
51544613 ATCAATTAAT
51544623 ATCAGAATCAGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
** *
51544654 ATTGGAATCGGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
51544685 ATCAGAATCAGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
51544716 ATCAGAATCAGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
51544747 ATCAGAATCAGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
** *
51544778 ATTGGAATCGGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
51544809 ATCAGAATCAGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
** *
51544840 ATTGGAATCGGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
51544871 ATCAGAATCAGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
** *
51544902 ATTGGAATCGGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
51544933 ATCAGAATCAGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
** *
51544964 ATTGGAATCGGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
51544995 ATCAGAATCAGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
** *
51545026 ATTGGAATCGGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
51545057 ATCAGAATCAGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
** *
51545088 ATTGGAATCGGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
51545119 ATCAGAATCAGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
** *
51545150 ATTGGAATCGGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
51545181 ATCAGAATCAGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
** *
51545212 ATTGGAATCGGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
51545243 ATCAGAATCAGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
** *
51545274 ATTGGAATCGGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
51545305 ATCAGAATCAGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
** *
51545336 ATTGGAATCGGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
51545367 ATCAGAATCAGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
** *
51545398 ATTGGAATCGGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
51545429 ATCAGAATCAGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAA
51545460 ATCAGAAT
1 ATCAGAAT
51545468 GTGTATGCAA
Statistics
Matches: 742, Mismatches: 72, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 742 1.00
ACGTcount: A:0.46, C:0.15, G:0.19, T:0.21
Consensus pattern (31 bp):
ATCAGAATCAGTATCAGGTAACAGAATCAAA
Found at i:51544694 original size:62 final size:62
Alignment explanation
Indices: 51544623--51545461 Score: 1651
Period size: 62 Copynumber: 13.5 Consensus size: 62
51544613 ATCAATTAAT
51544623 ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
** *
51544685 ATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAATCAGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
51544747 ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
51544809 ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
51544871 ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
51544933 ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
51544995 ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
51545057 ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
51545119 ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
51545181 ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
51545243 ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
51545305 ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
51545367 ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
51545429 ATCAGAATCAGTATCAGGTAACAGAATCAAAAT
1 ATCAGAATCAGTATCAGGTAACAGAATCAAAAT
51545462 CAGAATGTGT
Statistics
Matches: 771, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 771 1.00
ACGTcount: A:0.46, C:0.15, G:0.19, T:0.21
Consensus pattern (62 bp):
ATCAGAATCAGTATCAGGTAACAGAATCAAAATTGGAATCGGTATCAGGTAACAGAATCAAA
Found at i:51544742 original size:19 final size:19
Alignment explanation
Indices: 51544718--51544775 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
51544708 GAATCAAAAT
51544718 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
51544737 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
51544749 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
51544768 CAGAATCA
1 CAGAATCA
51544776 AAATTGGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:51545623 original size:27 final size:26
Alignment explanation
Indices: 51545587--51545694 Score: 108
Period size: 27 Copynumber: 4.0 Consensus size: 26
51545577 AGCATGGCTG
*
51545587 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
*
51545613 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* * *
51545640 CCAGAACAAATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
* * * *
51545667 CCAAAATCAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGACAGAGCCA
51545694 C
1 C
51545695 TTAACAGAAT
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
26 11 0.15
27 55 0.77
28 5 0.07
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:51545903 original size:22 final size:22
Alignment explanation
Indices: 51545850--51545910 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 22
51545840 AGGTAAATAC
*
51545850 GGTTGGCACGAAGCCATAGTCA
1 GGTTGGCACAAAGCCATAGTCA
* * * * *
51545872 AGATGACACAAAGCCATATTTA
1 GGTTGGCACAAAGCCATAGTCA
*
51545894 GGTTGGCACAGAGCCAT
1 GGTTGGCACAAAGCCAT
51545911 CGATAACGGG
Statistics
Matches: 29, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.33, C:0.21, G:0.26, T:0.20
Consensus pattern (22 bp):
GGTTGGCACAAAGCCATAGTCA
Found at i:51546293 original size:27 final size:27
Alignment explanation
Indices: 51546273--51546692 Score: 540
Period size: 27 Copynumber: 15.6 Consensus size: 27
51546263 TACCCCATAA
*
51546273 GGGTATCTCAGTAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* * *
51546300 GGGTATTTCGGTATTTCTACCCTACAA
1 GGGTATTTCAGTAATTCTACCCTACAG
* * *
51546327 GGGTTTTTCGGTAATTCTATCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* *
51546354 GGGTATTTCAGTACTTCTA-CTTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* *
51546380 GGGTATTTC-GATATTTCTACCCTACAA
1 GGGTATTTCAG-TAATTCTACCCTACAG
** * *
51546407 GGGTATTTTGGTATTTCTATCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
*
51546434 GGGTATTTCAATAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* * *
51546461 GGGTATTTCGGTATTTCTACCCTACAA
1 GGGTATTTCAGTAATTCTACCCTACAG
* * *
51546488 GGGTATTTCGGTATTTCTACCCTGCAG
1 GGGTATTTCAGTAATTCTACCCTACAG
51546515 GGGTATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
*
51546542 GGGTATTTCAGTAATTCTACCTTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
**
51546569 GGGTATTTCAGTAATTCTACATTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
51546596 GGGTATTTC-GATAATTCTACCCTACAG
1 GGGTATTTCAG-TAATTCTACCCTACAG
* *
51546623 GGGTATTTCGGTAATTCTACCCTACAA
1 GGGTATTTCAGTAATTCTACCCTACAG
*
51546650 GGGTATTTCAGTAATTCTACCCTACAA
1 GGGTATTTCAGTAATTCTACCCTACAG
*
51546677 CGGTATTTCAGTAATT
1 GGGTATTTCAGTAATT
51546693 TTATAAATCG
Statistics
Matches: 349, Mismatches: 39, Indels: 10
0.88 0.10 0.03
Matches are distributed among these distances:
25 1 0.00
26 23 0.07
27 323 0.93
28 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCTACCCTACAG
Found at i:51546490 original size:81 final size:81
Alignment explanation
Indices: 51546273--51546692 Score: 610
Period size: 81 Copynumber: 5.2 Consensus size: 81
51546263 TACCCCATAA
* *
51546273 GGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTTTTTCGG
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGG
*
51546338 TAATTCTATCCTACAG
66 TAATTCTACCCTACAG
* * * *
51546354 GGGTATTTCAGTACTTCTA-CTTACAGGGGTATTTCGATATTTCTACCCTACAAGGGTATTTTGG
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGG
* *
51546418 TATTTCTATCCTACAG
66 TAATTCTACCCTACAG
*
51546434 GGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGG
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGG
* *
51546499 TATTTCTACCCTGCAG
66 TAATTCTACCCTACAG
* * * * *
51546515 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCAG
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGG
**
51546580 TAATTCTACATTACAG
66 TAATTCTACCCTACAG
* *
51546596 GGGTATTTC-GATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
1 GGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCG
*
51546660 GTAATTCTACCCTACAA
65 GTAATTCTACCCTACAG
*
51546677 CGGTATTTCAGTAATT
1 GGGTATTTCAGTAATT
51546693 TTATAAATCG
Statistics
Matches: 305, Mismatches: 31, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
80 74 0.24
81 230 0.75
82 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.36
Consensus pattern (81 bp):
GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGG
TAATTCTACCCTACAG
Done.