Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 153 of 235
Found at i:51546708 original size:27 final size:27
Alignment explanation
Indices: 51546678--51546885 Score: 192
Period size: 27 Copynumber: 7.8 Consensus size: 27
51546668 ACCCTACAAC
* *
51546678 GGTATTTCAGTAATTTTATAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * *
51546705 GGTATTTCAGTAATTTTAC-AATCAAC
1 GGTATTTCGGTAATTTTACAAATCGAG
*
51546731 GGTATTTCGGTAATTTTGCAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * * *
51546758 GATATTTGGGTAATTTTATAAA-CTGGG
1 GGTATTTCGGTAATTTTACAAATC-GAG
*
51546785 GGTACTTT-GGTAATTTTACAAGTCGAG
1 GGTA-TTTCGGTAATTTTACAAATCGAG
* ** *
51546812 GGTCTTTTAGTAATTTTAC-AATCGAC
1 GGTATTTCGGTAATTTTACAAATCGAG
* * *
51546838 GGTATTTCGGTAATTTTATAAACCGGG
1 GGTATTTCGGTAATTTTACAAATCGAG
51546865 GGTACTTT-GGTAATTTTACAA
1 GGTA-TTTCGGTAATTTTACAA
51546886 CTAGGGGTAT
Statistics
Matches: 146, Mismatches: 28, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
26 46 0.32
27 93 0.64
28 7 0.05
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTACAAATCGAG
Found at i:51546708 original size:81 final size:79
Alignment explanation
Indices: 51546273--51546745 Score: 538
Period size: 81 Copynumber: 5.9 Consensus size: 79
51546263 TACCCCATAA
* * *
51546273 GGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTTTTTCGG
1 GGGTATTTCAGTAATTCTA--CTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGG
*
51546338 TAATTCTATCCTACAG
64 TAATTCTACCCTACAG
* * * *
51546354 GGGTATTTCAGTACTTCTACTTACAGGGGTATTTCGATATTTCTACCCTACAAGGGTATTTTGGT
1 GGGTATTTCAGTAATTCTAC-TACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGT
* *
51546419 ATTTCTATCCTACAG
65 AATTCTACCCTACAG
* *
51546434 GGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGG
1 GGGTATTTCAGTAATTCTA--CTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGG
* *
51546499 TATTTCTACCCTGCAG
64 TAATTCTACCCTACAG
* * * *
51546515 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCAG
1 GGGTATTTCAGTAATTCTA--CTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGG
**
51546580 TAATTCTACATTACAG
64 TAATTCTACCCTACAG
*
51546596 GGGTATTTC-GATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
1 GGGTATTTCAG-TAATTCTA--CTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCG
*
51546660 GTAATTCTACCCTACAA
63 GTAATTCTACCCTACAG
* * * * * ** *
51546677 CGGTATTTCAGTAATTTTA-TAAATCGAGGGTATTTCAGTAATTTTACAAT-CAACGGTATTTCG
1 GGGTATTTCAGTAATTCTACTACA--G-GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCG
51546740 GTAATT
63 GTAATT
51546746 TTGCAAATCG
Statistics
Matches: 347, Mismatches: 37, Indels: 17
0.87 0.09 0.04
Matches are distributed among these distances:
78 3 0.01
79 1 0.00
80 91 0.26
81 250 0.72
82 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (79 bp):
GGGTATTTCAGTAATTCTACTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTA
ATTCTACCCTACAG
Found at i:51546771 original size:80 final size:79
Alignment explanation
Indices: 51546651--51546885 Score: 260
Period size: 80 Copynumber: 2.9 Consensus size: 79
51546641 ACCCTACAAG
* ** * * * *
51546651 GGTATTTCAGTAATTCTACCCTACAACGGTATTTCAGTAATTTTATAAATCGAGGGTA-TTTCAG
1 GGTATTTCAGTAATTTTACAAT-CGACGGTATTTCGGTAATTTTATAAA-CGGGGGTACTTT-GG
51546715 TAATTTTACAA-TCAAC
63 TAATTTTACAAGTCAAC
* * *
51546731 GGTATTTCGGTAATTTTGCAAATCGA-GGATATTTGGGTAATTTTATAAACTGGGGGTACTTTGG
1 GGTATTTCAGTAATTTTAC-AATCGACGG-TATTTCGGTAATTTTATAAAC-GGGGGTACTTTGG
* *
51546795 TAATTTTACAAGTCGAG
63 TAATTTTACAAGTCAAC
* *
51546812 GGTCTTTTAGTAATTTTACAATCGACGGTATTTCGGTAATTTTATAAACCGGGGGTACTTTGGTA
1 GGTATTTCAGTAATTTTACAATCGACGGTATTTCGGTAATTTTATAAA-CGGGGGTACTTTGGTA
51546877 ATTTTACAA
65 ATTTTACAA
51546886 CTAGGGGTAT
Statistics
Matches: 131, Mismatches: 17, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
79 3 0.02
80 103 0.79
81 25 0.19
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (79 bp):
GGTATTTCAGTAATTTTACAATCGACGGTATTTCGGTAATTTTATAAACGGGGGTACTTTGGTAA
TTTTACAAGTCAAC
Found at i:51546825 original size:54 final size:53
Alignment explanation
Indices: 51546649--51546885 Score: 217
Period size: 53 Copynumber: 4.4 Consensus size: 53
51546639 CTACCCTACA
* ** * *
51546649 AGGGTATTTCAGTAATTCTACCCTACAACGGTATTTCAGTAATTTTATAAATCG
1 AGGGTATTTCAGTAATTTTA-CAAACAACGGTATTTCGGTAATTTTACAAATCG
* *
51546703 AGGGTATTTCAGTAATTTTACAATCAACGGTATTTCGGTAATTTTGCAAATCG
1 AGGGTATTTCAGTAATTTTACAAACAACGGTATTTCGGTAATTTTACAAATCG
* ** * *** *
51546756 AGGATATTTGGGTAATTTTATAAACTGGGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTATTTCAGTAATTTTACAAAC-AACGGTA-TTTCGGTAATTTTACAAATCG
* * * * * *
51546810 AGGGTCTTTTAGTAATTTTACAATCGACGGTATTTCGGTAATTTTATAAACCG
1 AGGGTATTTCAGTAATTTTACAAACAACGGTATTTCGGTAATTTTACAAATCG
* *
51546863 GGGGTACTTT-GGTAATTTTACAA
1 AGGGTA-TTTCAGTAATTTTACAA
51546886 CTAGGGGTAT
Statistics
Matches: 148, Mismatches: 31, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
52 3 0.02
53 82 0.55
54 60 0.41
55 3 0.02
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.38
Consensus pattern (53 bp):
AGGGTATTTCAGTAATTTTACAAACAACGGTATTTCGGTAATTTTACAAATCG
Found at i:51548871 original size:12 final size:12
Alignment explanation
Indices: 51548856--51549128 Score: 184
Period size: 12 Copynumber: 22.2 Consensus size: 12
51548846 AAGAAACATT
51548856 ATCAGAA-CTAGA
1 ATCAGAATC-AGA
51548868 ATCAGAATCAGA
1 ATCAGAATCAGA
* * *
51548880 ATCAAAATTAAA
1 ATCAGAATCAGA
51548892 ATCAGAATCAGA
1 ATCAGAATCAGA
51548904 ATCAGAATCAGA
1 ATCAGAATCAGA
* *
51548916 ATTAG-GTGACAGA
1 ATCAGAAT--CAGA
51548929 ATCAGAATCAGA
1 ATCAGAATCAGA
*
51548941 ATCAGTATCAGGTA
1 ATCAGAATCA-G-A
* *
51548955 ACCA-AATCAAA
1 ATCAGAATCAGA
* *
51548966 ATCAAAATCAGT
1 ATCAGAATCAGA
51548978 ATCAGGTAA-CAGA
1 ATCA-G-AATCAGA
*
51548991 ATCAAAATCAGA
1 ATCAGAATCAGA
*
51549003 ATCAGTATCAGGTA
1 ATCAGAATCA-G-A
*
51549017 A-CAGAATCAAA
1 ATCAGAATCAGA
*
51549028 ATCAGAATCAGT
1 ATCAGAATCAGA
51549040 ATCAGGTAA-CAGA
1 ATCA-G-AATCAGA
*
51549053 ATCAAAATCAGA
1 ATCAGAATCAGA
*
51549065 ATCAGTATCAGGTA
1 ATCAGAATCA-G-A
*
51549079 A-CAGAATCAAA
1 ATCAGAATCAGA
*
51549090 ATCAGAATCAGT
1 ATCAGAATCAGA
51549102 ATCAGGTAA-CAGA
1 ATCA-G-AATCAGA
*
51549115 ATCAAAATCAGA
1 ATCAGAATCAGA
51549127 AT
1 AT
51549129 GTGAATGCAA
Statistics
Matches: 203, Mismatches: 36, Indels: 44
0.72 0.13 0.16
Matches are distributed among these distances:
11 15 0.07
12 120 0.59
13 53 0.26
14 15 0.07
ACGTcount: A:0.49, C:0.16, G:0.15, T:0.19
Consensus pattern (12 bp):
ATCAGAATCAGA
Found at i:51548877 original size:18 final size:18
Alignment explanation
Indices: 51548856--51549128 Score: 184
Period size: 19 Copynumber: 14.8 Consensus size: 18
51548846 AAGAAACATT
51548856 ATCAGAA-CTAGAATCAGA
1 ATCAGAATC-AGAATCAGA
* * *
51548874 ATCAGAATCAAAATTAAA
1 ATCAGAATCAGAATCAGA
51548892 ATCAGAATCAGAATCAGA
1 ATCAGAATCAGAATCAGA
* *
51548910 ATCAGAATTAG-GTGACAGA
1 ATCAGAATCAGAAT--CAGA
*
51548929 ATCAGAATCAGAATCAGT
1 ATCAGAATCAGAATCAGA
* *
51548947 ATCAGGTAACCA-AATCAAA
1 ATCA-G-AATCAGAATCAGA
* *
51548966 ATCAAAATCAGTATCAGGTA
1 ATCAGAATCAGAATCA-G-A
*
51548986 A-CAGAATCAAAATCAGA
1 ATCAGAATCAGAATCAGA
*
51549003 ATCAGTATCAGGTAA-CAGA
1 ATCAGAATCA-G-AATCAGA
* *
51549022 ATCAAAATCAGAATCAGT
1 ATCAGAATCAGAATCAGA
*
51549040 ATCAGGTAA-CAGAATCAAA
1 ATCA-G-AATCAGAATCAGA
*
51549059 ATCAGAATCAGTATCAGGTA
1 ATCAGAATCAGAATCA-G-A
*
51549079 A-CAGAATCAAAATCAGA
1 ATCAGAATCAGAATCAGA
*
51549096 ATCAGTATCAGGTAA-CAGA
1 ATCAGAATCA-G-AATCAGA
*
51549115 ATCAAAATCAGAAT
1 ATCAGAATCAGAAT
51549129 GTGAATGCAA
Statistics
Matches: 196, Mismatches: 37, Indels: 44
0.71 0.13 0.16
Matches are distributed among these distances:
17 15 0.08
18 82 0.42
19 84 0.43
20 15 0.08
ACGTcount: A:0.49, C:0.16, G:0.15, T:0.19
Consensus pattern (18 bp):
ATCAGAATCAGAATCAGA
Found at i:51548932 original size:31 final size:31
Alignment explanation
Indices: 51548894--51549128 Score: 400
Period size: 31 Copynumber: 7.6 Consensus size: 31
51548884 AAATTAAAAT
* * * *
51548894 CAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
*
51548925 CAGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
*
51548956 CCA-AATCAAAATCAAAATCAGTATCAGGTAA
1 -CAGAATCAAAATCAGAATCAGTATCAGGTAA
51548987 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
51549018 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
51549049 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
51549080 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
51549111 CAGAATCAAAATCAGAAT
1 CAGAATCAAAATCAGAAT
51549129 GTGAATGCAA
Statistics
Matches: 196, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
30 2 0.01
31 192 0.98
32 2 0.01
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.19
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGTATCAGGTAA
Found at i:51549347 original size:27 final size:26
Alignment explanation
Indices: 51549250--51549348 Score: 74
Period size: 27 Copynumber: 3.7 Consensus size: 26
51549240 CATGGTTGCC
* * * * *
51549250 AGAATAGATATTGTGACAGAGTCACC
1 AGAACAGATAATGTGGCAGAGCCACT
*
51549276 AGATACAGATATTGTGGCAGAGCCACT
1 AGA-ACAGATAATGTGGCAGAGCCACT
* * *
51549303 AGAACAAATATATCTGGCATAGCCAGC-
1 AGAACAGATA-ATGTGGCAGAGCCA-CT
51549330 AGAATCAGATAATGTGGCA
1 AGAA-CAGATAATGTGGCA
51549349 AAACCACTTA
Statistics
Matches: 59, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
26 9 0.15
27 44 0.75
28 6 0.10
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.21
Consensus pattern (26 bp):
AGAACAGATAATGTGGCAGAGCCACT
Found at i:51550350 original size:27 final size:27
Alignment explanation
Indices: 51549921--51550349 Score: 477
Period size: 27 Copynumber: 15.9 Consensus size: 27
51549911 GGCAAAAAGG
* * * *
51549921 GTAATTTTACCCCATAAGGGTATCTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
51549948 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
51549975 GTATTTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
*
51550001 GATAATTCTATCCTACAAGGGTATTTCA
1 G-TAATTCTACCCTACAAGGGTATTTCA
* *
51550029 GTAATTCTA-CTTACAGGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
*
51550054 GATATTTCTACCCTACAAGGGTATTTCA
1 G-TAATTCTACCCTACAAGGGTATTTCA
* * * *
51550082 ATATTTCTATCCTACAAGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * * *
51550109 ATAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
51550136 GTATTTCTACCCTACTAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
51550163 GTATTTCTACCCTGCAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
51550190 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * ** *
51550217 TTAATTTTACTTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
** * *
51550244 GTAATTCTACATTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
51550271 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
51550298 ATAATTCTACCCTATAAGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
51550325 GTAATTCTACCCTACAATGGTATTT
1 GTAATTCTACCCTACAAGGGTATTT
51550350 TGATAATTTT
Statistics
Matches: 344, Mismatches: 53, Indels: 10
0.85 0.13 0.02
Matches are distributed among these distances:
25 1 0.00
26 22 0.06
27 320 0.93
28 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:51550373 original size:27 final size:26
Alignment explanation
Indices: 51550343--51550546 Score: 101
Period size: 27 Copynumber: 7.7 Consensus size: 26
51550333 ACCCTACAAT
*
51550343 GGTATTTTGATAATTTTATAAATTGAG
1 GGTATTTTGATAATTTTA-AAATCGAG
** * * *
51550370 GGTA-TTACAGTAATTTTACAATCAAC
1 GGTATTTTGA-TAATTTTAAAATCGAG
* * *
51550396 GGTATTTCGGTAAATTTACAAATCGAG
1 GGTATTTTGATAATTTTA-AAATCGAG
* * * * *
51550423 GATATTTGGGTAATTTTATAAACCGGG
1 GGTATTTTGATAATTTTA-AAATCGAG
* * *
51550450 GGTACTTTGGTAATTTTACAAGTC-AG
1 GGTATTTTGATAATTTTA-AAATCGAG
* *
51550476 GGTATTTT-AGTAATTTTACAATCGAC
1 GGTATTTTGA-TAATTTTAAAATCGAG
* *
51550502 GGTATTTCGATAATTTTATAAA-CCAG
1 GGTATTTTGATAATTTTA-AAATCGAG
* *
51550528 AGGTACTTTGGTAATTTTA
1 -GGTATTTTGATAATTTTA
51550547 CAACTAGGGG
Statistics
Matches: 131, Mismatches: 38, Indels: 16
0.71 0.21 0.09
Matches are distributed among these distances:
25 3 0.02
26 52 0.40
27 76 0.58
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (26 bp):
GGTATTTTGATAATTTTAAAATCGAG
Found at i:51550408 original size:26 final size:25
Alignment explanation
Indices: 51550343--51550570 Score: 120
Period size: 26 Copynumber: 8.6 Consensus size: 25
51550333 ACCCTACAAT
* * * *
51550343 GGTATTTTGATAATTTTATAAATTGA
1 GGTATTTCGGTAATTTTA-CAATCGA
* * *
51550369 GGGTATTACAGTAATTTTACAATCAA
1 -GGTATTTCGGTAATTTTACAATCGA
*
51550395 CGGTATTTCGGTAAATTTACAAATCGA
1 -GGTATTTCGGTAATTTTAC-AATCGA
* * * *
51550422 GGATATTTGGGTAATTTTATAAACCGGG
1 GG-TATTTCGGTAATTTTA-CAATC-GA
51550450 GGTACTTT-GGTAATTTTACAAGTC-A
1 GGTA-TTTCGGTAATTTTACAA-TCGA
**
51550475 GGGTATTTTAGTAATTTTACAATCGA
1 -GGTATTTCGGTAATTTTACAATCGA
* * *
51550501 CGGTATTTCGATAATTTTATAAACCAGA
1 -GGTATTTCGGTAATTTTA-CAATC-GA
* *
51550529 GGTACTTT-GGTAATTTTACAACTAGG
1 GGTA-TTTCGGTAATTTTACAA-TCGA
*
51550555 GGTATTTCAGTAATTT
1 GGTATTTCGGTAATTT
51550571 GGTAAACTAA
Statistics
Matches: 154, Mismatches: 33, Indels: 29
0.71 0.15 0.13
Matches are distributed among these distances:
25 8 0.05
26 70 0.45
27 65 0.42
28 11 0.07
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (25 bp):
GGTATTTCGGTAATTTTACAATCGA
Found at i:51550438 original size:80 final size:79
Alignment explanation
Indices: 51550343--51550567 Score: 217
Period size: 79 Copynumber: 2.8 Consensus size: 79
51550333 ACCCTACAAT
* ** *
51550343 GGTATTTTGATAATTTTATAAATTGAGGGTA-TTACAGTAATTTTACAA-TCAACGGTATTTCGG
1 GGTATTTCGATAATTTTATAAACCGAGGGTACTT-CAGTAATTTTACAAGTC-ACGGTATTTCAG
51550406 TAAATTTACAAATCGA-
64 TAAATTTAC-AATCGAC
* * * ** * *
51550422 GGATATTTGGGTAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAAGTCAGGGTATTTTAGT
1 GG-TATTTCGATAATTTTATAAACCGAGGGTACTTCAGTAATTTTACAAGTCACGGTATTTCAGT
*
51550487 AATTTTACAATCGAC
65 AAATTTACAATCGAC
** * *
51550502 GGTATTTCGATAATTTTATAAACC-AGAGGTACTTTGGTAATTTTACAACT-AGGGGTATTTCAG
1 GGTATTTCGATAATTTTATAAACCGAG-GGTACTTCAGTAATTTTACAAGTCA-CGGTATTTCAG
51550565 TAA
64 TAA
51550568 TTTGGTAAAC
Statistics
Matches: 124, Mismatches: 16, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
78 2 0.02
79 63 0.51
80 55 0.44
81 4 0.03
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (79 bp):
GGTATTTCGATAATTTTATAAACCGAGGGTACTTCAGTAATTTTACAAGTCACGGTATTTCAGTA
AATTTACAATCGAC
Found at i:51550533 original size:79 final size:79
Alignment explanation
Indices: 51550379--51550570 Score: 246
Period size: 79 Copynumber: 2.4 Consensus size: 79
51550369 GGGTATTACA
* * * * *
51550379 GTAATTTTACAATCAACGGTATTTCGGTAAATTTACAAATCGAGGATATTTGGGTAATTTTATAA
1 GTAATTTTACAATC-AGGGTATTTCAGTAATTTTACAAATCGAGGATATTTCGATAATTTTATAA
* *
51550444 ACCGGGGGTACTTTG
65 ACCAGAGGTACTTTG
*
51550459 GTAATTTTACAAGTCAGGGTATTTTAGTAATTTTAC-AATCGACGG-TATTTCGATAATTTTATA
1 GTAATTTTACAA-TCAGGGTATTTCAGTAATTTTACAAATCGA-GGATATTTCGATAATTTTATA
51550522 AACCAGAGGTACTTTG
64 AACCAGAGGTACTTTG
51550538 GTAATTTTACAA-CTAGGGGTATTTCAGTAATTT
1 GTAATTTTACAATC-A-GGGTATTTCAGTAATTT
51550571 GGTAAACTAA
Statistics
Matches: 99, Mismatches: 9, Indels: 9
0.85 0.08 0.08
Matches are distributed among these distances:
77 1 0.01
78 1 0.01
79 64 0.65
80 31 0.31
81 2 0.02
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (79 bp):
GTAATTTTACAATCAGGGTATTTCAGTAATTTTACAAATCGAGGATATTTCGATAATTTTATAAA
CCAGAGGTACTTTG
Found at i:51550577 original size:53 final size:53
Alignment explanation
Indices: 51550476--51550577 Score: 118
Period size: 53 Copynumber: 1.9 Consensus size: 53
51550466 TACAAGTCAG
* * *
51550476 GGTATTTTAGTAATTTTACAATCGACGGTATTTCGATAATTTTATAAACCAGA
1 GGTACTTTAGTAATTTTACAATAGACGGTATTTCGATAATTTGATAAACCAGA
* * *
51550529 GGTACTTTGGTAATTTTACAACTAG-GGGTATTTC-AGTAATTTGGTAAAC
1 GGTACTTTAGTAATTTTACAA-TAGACGGTATTTCGA-TAATTTGATAAAC
51550578 TAAAGTATTC
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
52 1 0.02
53 38 0.93
54 2 0.05
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (53 bp):
GGTACTTTAGTAATTTTACAATAGACGGTATTTCGATAATTTGATAAACCAGA
Found at i:51552602 original size:40 final size:40
Alignment explanation
Indices: 51552558--51552689 Score: 192
Period size: 40 Copynumber: 3.3 Consensus size: 40
51552548 ATTATTTGTC
* * * * *
51552558 GCACTTAGTGTGTGCTTCAATATAGCTTCAGCTATATATG
1 GCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATATG
51552598 GCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATATG
1 GCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATATG
* * *
51552638 GCACTTAGTGTGCGATTTGAGATAGCTTCGGCTATGTATG
1 GCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATATG
51552678 GCACTTAGTGTG
1 GCACTTAGTGTG
51552690 TGAGACATCA
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 84 1.00
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (40 bp):
GCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATATG
Found at i:51560111 original size:40 final size:40
Alignment explanation
Indices: 51560001--51560117 Score: 121
Period size: 40 Copynumber: 2.9 Consensus size: 40
51559991 CAGTTATTTG
* * *
51560001 TGGCACTTAGTGTGCGATAC-AATATAGCTTCGACTATATA
1 TGGCACTTAGTGTGCGAT-CTAACATAGCTTTGGCTATATA
* * * *
51560041 TGACATTTAGTGTGCGAT-TCGACATTGCTTTGGCTATATA
1 TGGCACTTAGTGTGCGATCT-AACATAGCTTTGGCTATATA
* *
51560081 TGGCACTTAGTGTGCGATCTAAGATAGCTTTAGCTAT
1 TGGCACTTAGTGTGCGATCTAACATAGCTTTGGCTAT
51560118 GTATAGAACT
Statistics
Matches: 61, Mismatches: 13, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
40 60 0.98
41 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATCTAACATAGCTTTGGCTATATA
Found at i:51560212 original size:16 final size:16
Alignment explanation
Indices: 51560190--51560244 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
51560180 GTTTGGTTCA
*
51560190 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
* *
51560206 TTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
51560222 CTGTAATGGAATA-ATG
1 CTGTAATGGAATAGA-G
51560238 CTGTAAT
1 CTGTAAT
51560245 AAGTAATTCA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
15 1 0.03
16 32 0.97
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:51560514 original size:17 final size:17
Alignment explanation
Indices: 51560492--51560524 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
51560482 AATTATTATT
51560492 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
51560509 AAATATAATTTAATAA
1 AAATATAATTTAATAA
51560525 CATTCTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATAATTTAATAAA
Found at i:51570529 original size:21 final size:20
Alignment explanation
Indices: 51570501--51570539 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
51570491 ATTGAAACAG
51570501 GGGCACACACCCGTGTGGAA
1 GGGCACACACCCGTGTGGAA
**
51570521 GGGCTACACGTCCGTGTGG
1 GGGC-ACACACCCGTGTGG
51570540 CCTTCTTGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.18, C:0.28, G:0.38, T:0.15
Consensus pattern (20 bp):
GGGCACACACCCGTGTGGAA
Found at i:51571888 original size:93 final size:93
Alignment explanation
Indices: 51571774--51571942 Score: 236
Period size: 93 Copynumber: 1.8 Consensus size: 93
51571764 CATCTAAGTA
* *
51571774 GATGCCATGTCCCAGATAGGTCTTACACTAGCTCTCGC-T-TATCTG-TGTCGATGCCATGTCCC
1 GATGCCATGTCCCAGATAGGTCTTACACTAGCT-T-GCATATAT-TGAGGCCGATGCCATGTCCC
* *
51571836 AGATAGTTCTTACATTGACACACCTCAAGCC
63 AGACAGGTCTTACATTGACACACCTCAAGCC
* *
51571867 GATGCCGTGTCTCAGATAGGTCTTACACTAGCTTGCATATATTGAGGCCGATGCCATGTCCCAGA
1 GATGCCATGTCCCAGATAGGTCTTACACTAGCTTGCATATATTGAGGCCGATGCCATGTCCCAGA
51571932 CAGGTCTTACA
66 CAGGTCTTACA
51571943 CTAGCACGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
91 2 0.03
92 4 0.06
93 61 0.91
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (93 bp):
GATGCCATGTCCCAGATAGGTCTTACACTAGCTTGCATATATTGAGGCCGATGCCATGTCCCAGA
CAGGTCTTACATTGACACACCTCAAGCC
Found at i:51572114 original size:14 final size:14
Alignment explanation
Indices: 51572097--51572126 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
51572087 TAAATACAAA
51572097 TAAATTACATTATT
1 TAAATTACATTATT
51572111 TAAATTACATTATT
1 TAAATTACATTATT
51572125 TA
1 TA
51572127 CGTACAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (14 bp):
TAAATTACATTATT
Found at i:51585907 original size:24 final size:24
Alignment explanation
Indices: 51585862--51585907 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
51585852 TTTCTTATGT
*
51585862 GGAGAAATAAGGAAGATGAGAGAA
1 GGAGAAATAAGGAAAATGAGAGAA
51585886 GGAGAAATAAGGAGAAAT-AGAG
1 GGAGAAATAAGGA-AAATGAGAG
51585908 TGAAATAGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 17 0.85
25 3 0.15
ACGTcount: A:0.54, C:0.00, G:0.37, T:0.09
Consensus pattern (24 bp):
GGAGAAATAAGGAAAATGAGAGAA
Found at i:51587789 original size:46 final size:46
Alignment explanation
Indices: 51587733--51587874 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 46
51587723 CTTAGACTGA
51587733 CTATCATCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTAG
1 CTATCATCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTAG
* * * *
51587779 CTATCGTCTCA-ATGCTGATGCCATGTCCTAGACATGGTCTTACACTGG
1 CTATCATCTCATA-GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG
* * * * *
51587827 CTCTCATAAT-GTGGCCGATGCATGTCCCAGATATGTCTTACACTAG
1 CTATCAT-CTCATAGCCGATGCATGTCCCAGACATGTCTTACACTAG
51587873 CT
1 CT
51587875 CACAAACAAA
Statistics
Matches: 78, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
45 1 0.01
46 29 0.37
47 25 0.32
48 22 0.28
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.30
Consensus pattern (46 bp):
CTATCATCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTAG
Found at i:51587851 original size:47 final size:44
Alignment explanation
Indices: 51587746--51587875 Score: 138
Period size: 47 Copynumber: 2.8 Consensus size: 44
51587736 TCATCTCATA
51587746 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTATCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC--TCGTCTCAAT
* * *
51587792 GCTGATGCCATGTCCTAGACATGGTCTTACACTGGCTC-TCAT-AATGT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCGTC-TCAA--T
*
51587839 GGCCGATGCATGTCCCAGATATGTCTTACACTAGCTC
1 -GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
51587876 ACAAACAAAT
Statistics
Matches: 71, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
45 4 0.06
46 23 0.32
47 26 0.37
48 18 0.25
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.29
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCGTCTCAAT
Found at i:51588251 original size:30 final size:30
Alignment explanation
Indices: 51588206--51588263 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
51588196 AAATTCACAT
* * *
51588206 CTTTGGTAAATTGACCATTTTGCCCCTAAA
1 CTTTGGCAAAATGACCATTTTACCCCTAAA
51588236 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
51588264 TGCTCGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.34
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAAA
Found at i:51595628 original size:35 final size:35
Alignment explanation
Indices: 51595582--51595655 Score: 139
Period size: 35 Copynumber: 2.1 Consensus size: 35
51595572 GGCTAGTTAC
51595582 AACCATTGGATTATCATGCCAACATTAGCCAAATT
1 AACCATTGGATTATCATGCCAACATTAGCCAAATT
*
51595617 AACCATTGGATTATCATGCCAACATTGGCCAAATT
1 AACCATTGGATTATCATGCCAACATTAGCCAAATT
51595652 AACC
1 AACC
51595656 TATACATGCC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.27
Consensus pattern (35 bp):
AACCATTGGATTATCATGCCAACATTAGCCAAATT
Found at i:51604962 original size:43 final size:43
Alignment explanation
Indices: 51604875--51605259 Score: 452
Period size: 43 Copynumber: 9.0 Consensus size: 43
51604865 ATTTTGTACA
* * * * *
51604875 ATGCCAATGTCCCTGACGTGGTCTTACATGTAATCTCATCTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * *
51604918 ATGTC-ACTGTCCCAGACAG-GGTCTTACTCTTAAACACATATCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCACATATCG
* **** *
51604961 ATGCCAACATTTTGGACGTGGTCTTACACGAAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
*
51605004 ATGCCAACGTCCCAGATGTGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
*
51605047 ATG-CAATGTCCCAGACGTGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * *
51605089 ATGCTAACGTCCTAGACGTGATCTTACACGTAATCACATATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * *
51605132 ATGCCGACATCCCAGACGTGGTCTAACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* *
51605175 ATGCCAACATCCCAGACATGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * * *
51605218 ATGCCAACATCCTAAATGTGGTCTTACAAGTAATCACATATC
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATC
51605260 AATGTCTCAT
Statistics
Matches: 289, Mismatches: 48, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
42 42 0.15
43 244 0.84
44 3 0.01
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
Found at i:51605169 original size:171 final size:172
Alignment explanation
Indices: 51604875--51605264 Score: 489
Period size: 171 Copynumber: 2.3 Consensus size: 172
51604865 ATTTTGTACA
* * * * * *
51604875 ATGCCAATGTCCCTGACGTGGTCTTACATGTAATCTCATCTCGATGTCACTGTCCCAGACAGGGT
1 ATGCCAATGTCCCAGACGTGGTCTTACAAGTAATCACATATCGATGTAACTGTCCCAGACAGGAT
* * **** *
51604940 CTTACTCTTAAACACATATCGATGCCAACATTTTGGACGTGGTCTTACACGAAATCACATATCGA
66 CTTACACGTAAACACATATCGATGCCAACATCCCAGACGTGGTCTAACACGAAATCACATATCGA
* **
51605005 TGCCAACGTCCCAGATGTGGTCTTACACGTAATCACATATCG
131 TGCCAACATCCCAGACATGGTCTTACACGTAATCACATATCG
* *
51605047 ATG-CAATGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCTAAC-GTCCTAGAC-GTG
1 ATGCCAATGTCCCAGACGTGGTCTTACAAGTAATCACATATCGATG-TAACTGTCCCAGACAG-G
* * * *
51605109 ATCTTACACGTAATCACATATTGATGCCGACATCCCAGACGTGGTCTAACACGTAATCACATATC
64 ATCTTACACGTAAACACATATCGATGCCAACATCCCAGACGTGGTCTAACACGAAATCACATATC
51605174 GATGCCAACATCCCAGACATGGTCTTACACGTAATCACATATCG
129 GATGCCAACATCCCAGACATGGTCTTACACGTAATCACATATCG
** * * * *
51605218 ATGCCAACATCCTAAATGTGGTCTTACAAGTAATCACATATCAATGT
1 ATGCCAATGTCCCAGACGTGGTCTTACAAGTAATCACATATCGATGT
51605265 CTCATATACA
Statistics
Matches: 187, Mismatches: 28, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
170 1 0.01
171 145 0.78
172 41 0.22
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (172 bp):
ATGCCAATGTCCCAGACGTGGTCTTACAAGTAATCACATATCGATGTAACTGTCCCAGACAGGAT
CTTACACGTAAACACATATCGATGCCAACATCCCAGACGTGGTCTAACACGAAATCACATATCGA
TGCCAACATCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:51606035 original size:15 final size:15
Alignment explanation
Indices: 51606012--51606042 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
51606002 TCAAAAATTC
51606012 CAATACAAAACATAT
1 CAATACAAAACATAT
*
51606027 CAATCCAAAACATAT
1 CAATACAAAACATAT
51606042 C
1 C
51606043 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:51607736 original size:13 final size:12
Alignment explanation
Indices: 51607709--51607755 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
51607699 TGGTTTCTAT
51607709 TTTCA-TTTCCAA
1 TTTCATTTTCC-A
51607721 TTTCATCTTTCCA
1 TTTCAT-TTTCCA
*
51607734 TTTTAATTTTCCA
1 -TTTCATTTTCCA
51607747 TTTCATTTT
1 TTTCATTTT
51607756 TCCTTATTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
12 13 0.43
13 7 0.23
14 10 0.33
ACGTcount: A:0.19, C:0.21, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTCATTTTCCA
Found at i:51607756 original size:13 final size:13
Alignment explanation
Indices: 51607714--51607758 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
51607704 TCTATTTTCA
*
51607714 TTTCCAATTTCATC
1 TTTCC-ATTTCATT
* *
51607728 TTTCCATTTTAAT
1 TTTCCATTTCATT
51607741 TTTCCATTTCATT
1 TTTCCATTTCATT
51607754 TTTCC
1 TTTCC
51607759 TTATTCACAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
13 21 0.81
14 5 0.19
ACGTcount: A:0.18, C:0.24, G:0.00, T:0.58
Consensus pattern (13 bp):
TTTCCATTTCATT
Found at i:51609115 original size:11 final size:11
Alignment explanation
Indices: 51609095--51609128 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
51609085 GAGTTACTTG
51609095 ATTATAATTTA
1 ATTATAATTTA
* *
51609106 CTTATGATTTA
1 ATTATAATTTA
51609117 ATTATAATTTA
1 ATTATAATTTA
51609128 A
1 A
51609129 CTTTTTAAAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.53
Consensus pattern (11 bp):
ATTATAATTTA
Found at i:51612406 original size:19 final size:19
Alignment explanation
Indices: 51612384--51612450 Score: 55
Period size: 19 Copynumber: 3.3 Consensus size: 19
51612374 TGATCTGAAC
51612384 TCATTGAGTTGGTCTGAGT
1 TCATTGAGTTGGTCTGAGT
* *
51612403 TCA-TGATATATGTGACATCTGAGC
1 TCATTGA-GT-TG-G---TCTGAGT
51612427 TCATTGAGTTGGTCTGAGT
1 TCATTGAGTTGGTCTGAGT
51612446 TCATT
1 TCATT
51612451 ATGTTTATGA
Statistics
Matches: 37, Mismatches: 4, Indels: 14
0.67 0.07 0.25
Matches are distributed among these distances:
18 3 0.08
19 15 0.41
20 2 0.05
21 1 0.03
22 1 0.03
23 2 0.05
24 10 0.27
25 3 0.08
ACGTcount: A:0.21, C:0.13, G:0.25, T:0.40
Consensus pattern (19 bp):
TCATTGAGTTGGTCTGAGT
Found at i:51617951 original size:53 final size:54
Alignment explanation
Indices: 51617773--51617965 Score: 190
Period size: 55 Copynumber: 3.6 Consensus size: 54
51617763 GCACTAAGAT
*** * * *
51617773 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAG-ACACGACATTGATGAGTTCTATAAGGC
* * * *
51617828 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACACGACATTGATGAGTT-CTATAAGGC
* * * * * * * *
51617883 AAAGTTCCCATGTAAGAACATGCCAAGGCACGACATTGGTGCGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACACGACATTGATGAGTTCTATAAGGC
*
51617936 AAGGATACCACGTAAGACCATGTCAAGACA
1 AAGGATACCATGTAAGACCATGTCAAGACA
51617966 TGGAAATGGT
Statistics
Matches: 112, Mismatches: 25, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
53 30 0.27
54 18 0.16
55 64 0.57
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACACGACATTGATGAGTTCTATAAGGC
Found at i:51619205 original size:55 final size:55
Alignment explanation
Indices: 51619142--51619252 Score: 170
Period size: 55 Copynumber: 2.0 Consensus size: 55
51619132 AATTGATTGG
* *
51619142 ACCAAAAATTTTGGAAAAACTT-TAGTAAGAATACATATGAGTCTAGTTGTAGGGA
1 ACCAAAAATTCTGGAAAAAATTAT-GTAAGAATACATATGAGTCTAGTTGTAGGGA
* *
51619197 ACCAAAAATTCTGGAAAAAATTATGTAAGAATATATTTGAGTCTAGTTGTAGGGA
1 ACCAAAAATTCTGGAAAAAATTATGTAAGAATACATATGAGTCTAGTTGTAGGGA
51619252 A
1 A
51619253 AATTTACAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
55 50 0.98
56 1 0.02
ACGTcount: A:0.42, C:0.08, G:0.20, T:0.30
Consensus pattern (55 bp):
ACCAAAAATTCTGGAAAAAATTATGTAAGAATACATATGAGTCTAGTTGTAGGGA
Found at i:51621060 original size:26 final size:26
Alignment explanation
Indices: 51621031--51621138 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
51621021 TGGTACAAAT
51621031 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
51621057 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
51621083 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
51621109 TAATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
51621135 TGAT
1 TGAT
51621139 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:51622655 original size:26 final size:26
Alignment explanation
Indices: 51622626--51622678 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
51622616 TTTACAGTTT
51622626 TACCCCTAGTGGATAAATT-ACCGAAA
1 TACCCCTAG-GGATAAATTGACCGAAA
* * *
51622652 TACCCTTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
51622678 T
1 T
51622679 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:51627562 original size:54 final size:54
Alignment explanation
Indices: 51627498--51627705 Score: 201
Period size: 54 Copynumber: 3.9 Consensus size: 54
51627488 TTGGTAAGAT
* *
51627498 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGAAATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * *
51627552 AAGGAAATCATGTAACACCATGTCAAGACATGGCATTGATGAGTTACTATAAGG-
1 AAGGAAATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGC
* * * *
51627606 AA--AAATTCCCATGTAAGACTATGCCAAGGCATGGCATT-AGTGAGTTC-ATAAGTC
1 AAGGAAA-T--CATGTAAGACCATGCCAAGACATGGCATTGA-TAAGTTCTATAAGGC
* * * * * *
51627660 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGAAATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
51627706 AAAAAGGAAA
Statistics
Matches: 126, Mismatches: 19, Indels: 19
0.77 0.12 0.12
Matches are distributed among these distances:
52 3 0.02
53 36 0.29
54 46 0.37
55 39 0.31
56 2 0.02
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.24
Consensus pattern (54 bp):
AAGGAAATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:51627724 original size:108 final size:109
Alignment explanation
Indices: 51627506--51627716 Score: 284
Period size: 108 Copynumber: 2.0 Consensus size: 109
51627496 ATAAGGATAT
* *
51627506 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAACACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAACACC
* * * *
51627571 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAATTCC
66 ATGTCAAGACATGGCAATGATAAGTTACAAAAAGGAAAAATTCC
* * * * *
51627615 CATGTAAGACTATGCCAAGGCATGGCATT-AGTGAGTTC-ATAAGTCAAGGATACCACGTAAGAC
1 CATGTAAGACCATGCCAAGGCATGGCATTGA-TAAGTTCTATAAGGCAAGGAAACCACGTAACAC
*
51627678 CATGTCAAGACATGGCAATGGTAAGTT-CAAAAAGGAAAA
65 CATGTCAAGACATGGCAATGATAAGTTACAAAAAGGAAAA
51627717 GGTTCCCAAG
Statistics
Matches: 89, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 10 0.11
108 45 0.51
109 34 0.38
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.22
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAACACC
ATGTCAAGACATGGCAATGATAAGTTACAAAAAGGAAAAATTCC
Found at i:51628715 original size:8 final size:8
Alignment explanation
Indices: 51628702--51628726 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
51628692 AGTTATAGTT
51628702 TATATTTC
1 TATATTTC
51628710 TATATTTC
1 TATATTTC
51628718 TATATTTC
1 TATATTTC
51628726 T
1 T
51628727 TAGTGAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (8 bp):
TATATTTC
Found at i:51632818 original size:43 final size:43
Alignment explanation
Indices: 51632732--51632818 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 43
51632722 AATGTATATG
* *
51632732 ATCTGAACTCATTGAGTTGGTCTGAGTTCATGATATATGTGAC
1 ATCTGAACTCATTGAGTTGATCTGAGTTCATGATATATATGAC
* * *
51632775 ATCTGAGCTCATTGAGTTGATCTGAGTTCATGATGTTTATGAC
1 ATCTGAACTCATTGAGTTGATCTGAGTTCATGATATATATGAC
51632818 A
1 A
51632819 CATGTAATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.38
Consensus pattern (43 bp):
ATCTGAACTCATTGAGTTGATCTGAGTTCATGATATATATGAC
Found at i:51642115 original size:13 final size:14
Alignment explanation
Indices: 51642097--51642125 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
51642087 CGCTTTCATG
51642097 TGCTTCAT-CTTAT
1 TGCTTCATACTTAT
51642110 TGCTTCATACTTAT
1 TGCTTCATACTTAT
51642124 TG
1 TG
51642126 ACCTGAACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.17, C:0.21, G:0.10, T:0.52
Consensus pattern (14 bp):
TGCTTCATACTTAT
Found at i:51649978 original size:44 final size:43
Alignment explanation
Indices: 51649930--51650034 Score: 115
Period size: 44 Copynumber: 2.4 Consensus size: 43
51649920 GCCAATATAC
*
51649930 ATATATATAGCCGAATCTTTCTCGATCTCGCACACTAAGTGCAA
1 ATATATATAGCCGAATCTTT-TCGATCTCGCACAATAAGTGCAA
* * * * * *
51649974 ATATATATAGCTGAAGCTATTTTGATTTCGTACAATAAGTGCAC
1 ATATATATAGCCGAATCT-TTTCGATCTCGCACAATAAGTGCAA
51650018 ATA-AT-TAGCCGAATCTT
1 ATATATATAGCCGAATCTT
51650035 CATCGAACAC
Statistics
Matches: 51, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
41 1 0.02
42 9 0.18
43 2 0.04
44 37 0.73
45 2 0.04
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.33
Consensus pattern (43 bp):
ATATATATAGCCGAATCTTTTCGATCTCGCACAATAAGTGCAA
Found at i:51650548 original size:20 final size:21
Alignment explanation
Indices: 51650509--51650549 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
51650499 ACTTTAATAA
51650509 CTATCATCAAACACTCAAAAT
1 CTATCATCAAACACTCAAAAT
*
51650530 CTATCATTAAACA-TCAAAAT
1 CTATCATCAAACACTCAAAAT
51650550 AATCTTGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (21 bp):
CTATCATCAAACACTCAAAAT
Found at i:51652831 original size:19 final size:19
Alignment explanation
Indices: 51652795--51652834 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
51652785 AAAAATTAAT
51652795 ATTAACTAAATGCAAATGA
1 ATTAACTAAATGCAAATGA
51652814 ATTAATCTAAATGC-AATGA
1 ATTAA-CTAAATGCAAATGA
51652833 AT
1 AT
51652835 GAGATGAGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.30
Consensus pattern (19 bp):
ATTAACTAAATGCAAATGA
Found at i:51658390 original size:13 final size:12
Alignment explanation
Indices: 51658376--51658425 Score: 64
Period size: 13 Copynumber: 3.9 Consensus size: 12
51658366 TGGTTTCTAT
51658376 TTTCATTTTCCA
1 TTTCATTTTCCA
51658388 TTTCATGTTTCCA
1 TTTCAT-TTTCCA
*
51658401 TTTTATTTTTCCA
1 TTTCA-TTTTCCA
51658414 TTTCAATTTTCC
1 TTTC-ATTTTCC
51658426 TTATTAACAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
12 6 0.18
13 25 0.76
14 2 0.06
ACGTcount: A:0.16, C:0.22, G:0.02, T:0.60
Consensus pattern (12 bp):
TTTCATTTTCCA
Found at i:51658397 original size:26 final size:26
Alignment explanation
Indices: 51658368--51658418 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
51658358 CATAATTTTG
*
51658368 GTTTCTATTTTCA-TTTTCCATTTCAT
1 GTTTCCATTTT-ATTTTTCCATTTCAT
51658394 GTTTCCATTTTATTTTTCCATTTCA
1 GTTTCCATTTTATTTTTCCATTTCA
51658419 ATTTTCCTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.16, C:0.20, G:0.04, T:0.61
Consensus pattern (26 bp):
GTTTCCATTTTATTTTTCCATTTCAT
Found at i:51662162 original size:47 final size:46
Alignment explanation
Indices: 51662094--51662217 Score: 162
Period size: 47 Copynumber: 2.7 Consensus size: 46
51662084 TTTGTGCACT
* *
51662094 AGTGTAAGA-CATGTCTAGGACAT-GCATCGCCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGCCCA-ACT-TGAGAGCC
* **
51662140 AGTGTAAGACCATGTCTGGGACATGGCATCAACTTAACTTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GCCCAACTTGAGAGCC
51662187 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
51662218 GTATTATACC
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
46 9 0.13
47 51 0.74
48 7 0.10
49 2 0.03
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGCCCAACTTGAGAGCC
Found at i:51666364 original size:21 final size:20
Alignment explanation
Indices: 51666335--51666373 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
51666325 AACACATTGG
*
51666335 GAGAACGAATATTATCCTAAA
1 GAGAACGAAGA-TATCCTAAA
*
51666356 GAGATCGAAGATATCCTA
1 GAGAACGAAGATATCCTA
51666374 TGAGGGTAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.44, C:0.15, G:0.18, T:0.23
Consensus pattern (20 bp):
GAGAACGAAGATATCCTAAA
Found at i:51668023 original size:22 final size:24
Alignment explanation
Indices: 51667987--51668030 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
51667977 TTGCTTTTGT
51667987 TTTTCTTAGGCTTTC-TATTTTTC
1 TTTTCTTAGGCTTTCATATTTTTC
*
51668010 TTTTC-TAGGGTTTCATATTTT
1 TTTTCTTAGGCTTTCATATTTT
51668031 CTATCTTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.11, C:0.14, G:0.11, T:0.64
Consensus pattern (24 bp):
TTTTCTTAGGCTTTCATATTTTTC
Found at i:51669646 original size:177 final size:177
Alignment explanation
Indices: 51669350--51669706 Score: 583
Period size: 177 Copynumber: 2.0 Consensus size: 177
51669340 TGATAGTCTC
* *
51669350 ACTTCGGAATAGGATCTTTCGATGAAGCGAATATAAAATAAACTTAGTAAAAGCTGAAAACTAAT
1 ACTTCGGAATAGGATCTTTCAATGAAGCGAATATAAAATAAACATAGTAAAAGCTGAAAACTAAT
**
51669415 AAAAACCTAAAGAATAAGTTTCTTCTCCCTAAATTTGAGTGTTTAATGTGTTGTTCTAAGCTCTT
66 AAAAACCTAAAGAATAAGTTTCTTCTCCCTAAATTTGAGTGTTTAATGTGTTGTTCTAAAATCTT
* * *
51669480 ATTTATATATTACATGTATTATGGCCTAATTAGGTCAAGTAAATATG
131 ATTTATATATTACATGTATTATGACCTAAATAGGTCAAGTAAATAGG
*
51669527 ACTTCGGAATAGGATCTTTCAATTAAGCGAATATAAAATAAACATAGTAAAAGCTGAAAACTAAT
1 ACTTCGGAATAGGATCTTTCAATGAAGCGAATATAAAATAAACATAGTAAAAGCTGAAAACTAAT
* * *
51669592 AAAAACCTAAAGAAT-ATTTTTTGTCTCCCTAAATTT-ATGTGTTTAATGTGTTGTTTTAAAATC
66 AAAAACCTAAAGAATAAGTTTCT-TCTCCCTAAATTTGA-GTGTTTAATGTGTTGTTCTAAAATC
51669655 TTATTTATATATTACATGTATTATGACCTAAATAGGTCAAGTAAATAGG
129 TTATTTATATATTACATGTATTATGACCTAAATAGGTCAAGTAAATAGG
51669704 ACT
1 ACT
51669707 AAGCATGTTA
Statistics
Matches: 167, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
176 6 0.04
177 161 0.96
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.36
Consensus pattern (177 bp):
ACTTCGGAATAGGATCTTTCAATGAAGCGAATATAAAATAAACATAGTAAAAGCTGAAAACTAAT
AAAAACCTAAAGAATAAGTTTCTTCTCCCTAAATTTGAGTGTTTAATGTGTTGTTCTAAAATCTT
ATTTATATATTACATGTATTATGACCTAAATAGGTCAAGTAAATAGG
Found at i:51670535 original size:20 final size:20
Alignment explanation
Indices: 51670506--51670549 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
51670496 GTTGGTTTAA
51670506 TAAA-AGGGTTGATTATGTT
1 TAAATAGGGTTGATTATGTT
51670525 TAAATAGGGTTGATTATGTT
1 TAAATAGGGTTGATTATGTT
51670545 TAAAT
1 TAAAT
51670550 TGGTATGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 4 0.17
20 20 0.83
ACGTcount: A:0.34, C:0.00, G:0.23, T:0.43
Consensus pattern (20 bp):
TAAATAGGGTTGATTATGTT
Found at i:51674785 original size:22 final size:21
Alignment explanation
Indices: 51674760--51674800 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
51674750 ATTAGATTAA
51674760 AATTAAAATTAATAATATTATG
1 AATTAAAATTAATAA-ATTATG
* *
51674782 AATTAATATTCATAAATTA
1 AATTAAAATTAATAAATTA
51674801 GACCATCTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (21 bp):
AATTAAAATTAATAAATTATG
Found at i:51681394 original size:5 final size:4
Alignment explanation
Indices: 51681337--51681394 Score: 66
Period size: 4 Copynumber: 14.0 Consensus size: 4
51681327 CAAAATTCAG
51681337 AATA AATA AATA AATA AATA AATA AAT- AATA AA-A TAATAA AATA TAATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA -AAT-A AATA -AATA
51681386 AATA CAATA
1 AATA -AATA
51681395 TTGGGATCAT
Statistics
Matches: 48, Mismatches: 0, Indels: 11
0.81 0.00 0.19
Matches are distributed among these distances:
3 4 0.08
4 32 0.67
5 11 0.23
6 1 0.02
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (4 bp):
AATA
Found at i:51683143 original size:28 final size:28
Alignment explanation
Indices: 51683101--51683160 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
51683091 ACATATACTA
* *
51683101 GAAATTTTATTTCACGCGTATGCATGTG
1 GAAATTTTATCTCACACGTATGCATGTG
*
51683129 GAAATTTTATCTCACACTTATGCATGTG
1 GAAATTTTATCTCACACGTATGCATGTG
51683157 GAAA
1 GAAA
51683161 CTACGTATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (28 bp):
GAAATTTTATCTCACACGTATGCATGTG
Found at i:51686880 original size:26 final size:26
Alignment explanation
Indices: 51686838--51686888 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
51686828 TCTTAAAAAT
* *
51686838 ACTTTTTAACATCATTTTTTCAAAGC
1 ACTTTTTAAAATCATTTTTTAAAAGC
51686864 ACTTTTTAAAAGT-ATTTTTTAAAAG
1 ACTTTTTAAAA-TCATTTTTTAAAAG
51686889 TAATGTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.47
Consensus pattern (26 bp):
ACTTTTTAAAATCATTTTTTAAAAGC
Found at i:51686882 original size:13 final size:13
Alignment explanation
Indices: 51686824--51686890 Score: 55
Period size: 13 Copynumber: 5.2 Consensus size: 13
51686814 ATGGACATTT
* *
51686824 TATTTCTTAAAAA
1 TATTTTTTAAAAG
* *
51686837 TACTTTTTAACA-
1 TATTTTTTAAAAG
*
51686849 TCATTTTTTCAAAG
1 T-ATTTTTTAAAAG
* *
51686863 CACTTTTTAAAAG
1 TATTTTTTAAAAG
51686876 TATTTTTTAAAAG
1 TATTTTTTAAAAG
51686889 TA
1 TA
51686891 ATGTTAAATT
Statistics
Matches: 41, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
12 1 0.02
13 40 0.98
ACGTcount: A:0.37, C:0.10, G:0.04, T:0.48
Consensus pattern (13 bp):
TATTTTTTAAAAG
Found at i:51688815 original size:30 final size:30
Alignment explanation
Indices: 51688779--51688846 Score: 100
Period size: 30 Copynumber: 2.3 Consensus size: 30
51688769 TACCAACTAG
* *
51688779 GTTCTCCTTTTGGTTTCACCTAGGCATATA
1 GTTCTCCTTTCGATTTCACCTAGGCATATA
*
51688809 GTTCTCCTTTCGATTTCATCTAGGCATATA
1 GTTCTCCTTTCGATTTCACCTAGGCATATA
*
51688839 GATCTCCT
1 GTTCTCCT
51688847 CTTAGTCTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.18, C:0.25, G:0.15, T:0.43
Consensus pattern (30 bp):
GTTCTCCTTTCGATTTCACCTAGGCATATA
Found at i:51690231 original size:51 final size:51
Alignment explanation
Indices: 51690171--51690339 Score: 198
Period size: 51 Copynumber: 3.3 Consensus size: 51
51690161 ATTAAACATT
* *
51690171 TCTCACATGGTCTTACACCTTATATCATATATG-GAGATACCATGAAGCCTC
1 TCTCACATGGTCTTATACCTCATATCATATATGTG-GATACCATGAAGCCTC
* * * *
51690222 TCTCACATGGTTTTATACCTCATATCATATTTGTGGATGCCATGCAGCCTC
1 TCTCACATGGTCTTATACCTCATATCATATATGTGGATACCATGAAGCCTC
* ** * *
51690273 TCTCACATGGTCTTATACCTCATA-CGATATCTGTGGATGTCATGGAGCCTT
1 TCTCACATGGTCTTATACCTCATATC-ATATATGTGGATACCATGAAGCCTC
*
51690324 TCTTACATGGTCTTAT
1 TCTCACATGGTCTTAT
51690340 GCTTTATTTT
Statistics
Matches: 104, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
50 1 0.01
51 102 0.98
52 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (51 bp):
TCTCACATGGTCTTATACCTCATATCATATATGTGGATACCATGAAGCCTC
Found at i:51690962 original size:20 final size:20
Alignment explanation
Indices: 51690937--51690977 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
51690927 AAGCAGTGCC
51690937 TTACACTCACGCCCTACTAT
1 TTACACTCACGCCCTACTAT
51690957 TTACACTCACGCCCTACTAT
1 TTACACTCACGCCCTACTAT
51690977 T
1 T
51690978 CTTACACCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.39, G:0.05, T:0.32
Consensus pattern (20 bp):
TTACACTCACGCCCTACTAT
Found at i:51693243 original size:49 final size:49
Alignment explanation
Indices: 51693186--51693357 Score: 188
Period size: 49 Copynumber: 3.5 Consensus size: 49
51693176 GTTGTGTGTT
* *
51693186 AGTGTAAGACCTGTCTAGGACATGGCATCGACAC-CGATAGATAAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATAAAAGCC
* **
51693235 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATATATAAAATTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATAAAAGCC
* * * ** ** *
51693284 AGTGTAAGACCTGTCTGGGACACGGCATCAACTTTAAT-G-TACTAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATAAAAGCC
51693331 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACC-TGTCTGGGACATGGC
51693358 GTCGGCATTT
Statistics
Matches: 104, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
47 14 0.13
48 15 0.14
49 75 0.72
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATAAAAGCC
Found at i:51694421 original size:40 final size:41
Alignment explanation
Indices: 51694371--51694450 Score: 110
Period size: 40 Copynumber: 2.0 Consensus size: 41
51694361 AAGGTTTTTA
51694371 GACAAGGGCCA-GGACACGGGC-ATGTCATGGCCGTGTGAGG
1 GACAAGGGCCATGGACACGGGCGATGTCA-GGCCGTGTGAGG
* *
51694411 GACATGGGCCATGGACACGGGCGTGTGTCAGGCCGTGTGA
1 GACAAGGGCCATGGACACGGGCG-ATGTCAGGCCGTGTGA
51694451 AAACCCCTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 10 0.29
41 10 0.29
42 10 0.29
43 5 0.14
ACGTcount: A:0.20, C:0.23, G:0.42, T:0.15
Consensus pattern (41 bp):
GACAAGGGCCATGGACACGGGCGATGTCAGGCCGTGTGAGG
Found at i:51696723 original size:12 final size:12
Alignment explanation
Indices: 51696694--51696723 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
51696684 AATAGTCTAA
51696694 TATTTTAATATT
1 TATTTTAATATT
51696706 TA-TTTAATATT
1 TATTTTAATATT
51696717 TATTTTA
1 TATTTTA
51696724 TAGTATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
TATTTTAATATT
Found at i:51696825 original size:62 final size:59
Alignment explanation
Indices: 51696759--51696875 Score: 180
Period size: 62 Copynumber: 1.9 Consensus size: 59
51696749 AGTAATTATC
* * *
51696759 TTAATATTAAATTTAATTTAATATTTATCTTGTAGATAAATATTCTATTATTTTAATAAGAT
1 TTAATATTAAATTTAATCTAATATTTATC-T-T-GATAAATATTATATTAATTTAATAAGAT
51696821 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
1 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
51696876 TTAAAGTGAT
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
59 22 0.42
60 1 0.02
61 1 0.02
62 28 0.54
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.51
Consensus pattern (59 bp):
TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATAAGAT
Found at i:51697919 original size:20 final size:22
Alignment explanation
Indices: 51697894--51697933 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
51697884 ATGCCATGCA
*
51697894 TATATT-GG-AAGCATGCCATT
1 TATATTAGGTAAGAATGCCATT
51697914 TATATTAGGTAAGAATGCCA
1 TATATTAGGTAAGAATGCCA
51697934 CTAGGACTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 2 0.12
22 9 0.53
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (22 bp):
TATATTAGGTAAGAATGCCATT
Found at i:51702338 original size:40 final size:40
Alignment explanation
Indices: 51702279--51702397 Score: 148
Period size: 40 Copynumber: 3.0 Consensus size: 40
51702269 TACATAGTCG
*
51702279 AAGCTATCTCAAATCGCACACTAAGTGCCATATATAGCCA
1 AAGCTATCTCGAATCGCACACTAAGTGCCATATATAGCCA
* * * **
51702319 AAGCTTTCTCGAATTGCACACTAAGTGCCATATGTAGCTG
1 AAGCTATCTCGAATCGCACACTAAGTGCCATATATAGCCA
* * * *
51702359 AAGCTATGTTGAATCGCACACTAAGTGCCACAAATAGCC
1 AAGCTATCTCGAATCGCACACTAAGTGCCATATATAGCC
51702398 GATTTGTAGT
Statistics
Matches: 65, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (40 bp):
AAGCTATCTCGAATCGCACACTAAGTGCCATATATAGCCA
Found at i:51713471 original size:28 final size:28
Alignment explanation
Indices: 51713430--51713489 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
51713420 ATATCGTTGA
* *
51713430 ATACTCAATGTCTCACACACTAAGTGTT
1 ATACTCAATATCTCACACACTAAGTGTC
* *
51713458 ATACTCGATATCTCGCACACTAAGTGTC
1 ATACTCAATATCTCACACACTAAGTGTC
51713486 ATAC
1 ATAC
51713490 ATAGCCGAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.30
Consensus pattern (28 bp):
ATACTCAATATCTCACACACTAAGTGTC
Found at i:51713574 original size:40 final size:40
Alignment explanation
Indices: 51713470--51713575 Score: 115
Period size: 40 Copynumber: 2.6 Consensus size: 40
51713460 ACTCGATATC
* * *
51713470 TCGCACACTAAGTGTCATACATAGCCGAAGCTATCTCAAA
1 TCGCACACTAAGTGCCATAAATAGCCAAAGCTATCTCAAA
* * * * *
51713510 TCACACACTAGGT-CGCATATATAGCCAAAGCTTTCTCGAA
1 TCGCACACTAAGTGC-CATAAATAGCCAAAGCTATCTCAAA
*
51713550 TCGCACACTAAGTGCCACAAATAGCC
1 TCGCACACTAAGTGCCATAAATAGCC
51713576 GATTTGTCAT
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
40 52 0.98
41 1 0.02
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.22
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATAAATAGCCAAAGCTATCTCAAA
Found at i:51714087 original size:21 final size:20
Alignment explanation
Indices: 51714063--51714102 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
51714053 ACTTGTTTAA
51714063 CTATCAACAACCATTCAAAAT
1 CTATCAACAACCA-TCAAAAT
* *
51714084 CTATCATCAATCATCAAAA
1 CTATCAACAACCATCAAAA
51714103 ATCATACATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (20 bp):
CTATCAACAACCATCAAAAT
Found at i:51716603 original size:15 final size:15
Alignment explanation
Indices: 51716583--51716614 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
51716573 CATTTCACTA
*
51716583 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
51716598 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
51716613 TT
1 TT
51716615 TGCATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:51724727 original size:16 final size:16
Alignment explanation
Indices: 51724685--51724727 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
51724675 GTAGCCAACC
51724685 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
* * *
51724701 TTTCGGGTTTTTGGCA
1 TTTCAGCTTTTCGGCA
*
51724717 TTTCATCTTTT
1 TTTCAGCTTTT
51724728 GTCGGTCTAC
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.09, C:0.19, G:0.19, T:0.53
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCA
Found at i:51732737 original size:19 final size:19
Alignment explanation
Indices: 51732713--51732751 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
51732703 TTATCTTAAC
*
51732713 AGTATTTTATTACTTTACT
1 AGTATTTTATTAATTTACT
51732732 AGTATTTTATTAATTTACT
1 AGTATTTTATTAATTTACT
51732751 A
1 A
51732752 TTAAAGTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.31, C:0.08, G:0.05, T:0.56
Consensus pattern (19 bp):
AGTATTTTATTAATTTACT
Found at i:51735933 original size:24 final size:24
Alignment explanation
Indices: 51735878--51735934 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 24
51735868 TAAAACAACA
* *
51735878 AAAATAAAATCTATTCTAAAAAGG
1 AAAAGAAAATCTAATCTAAAAAGG
** * *
51735902 AAGGGAAAATCTAATCTTAAAATG
1 AAAAGAAAATCTAATCTAAAAAGG
51735926 AAAAGAAAA
1 AAAAGAAAA
51735935 GAGAAGGAAA
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.60, C:0.07, G:0.12, T:0.21
Consensus pattern (24 bp):
AAAAGAAAATCTAATCTAAAAAGG
Found at i:51735960 original size:5 final size:5
Alignment explanation
Indices: 51735952--51735979 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
51735942 AAAAGAAACT
51735952 TAACC TAACC TAACC TAACC TAACC TAA
1 TAACC TAACC TAACC TAACC TAACC TAA
51735980 AACTATGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.43, C:0.36, G:0.00, T:0.21
Consensus pattern (5 bp):
TAACC
Found at i:51737215 original size:12 final size:11
Alignment explanation
Indices: 51737190--51737223 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 11
51737180 TCATTTTGGT
*
51737190 AAAATGAAAAA
1 AAAAAGAAAAA
51737201 AAAAAGAAAAGA
1 AAAAAGAAAA-A
51737213 AAAAAGAAAAA
1 AAAAAGAAAAA
51737224 GAGCATGGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (11 bp):
AAAAAGAAAAA
Found at i:51743328 original size:83 final size:83
Alignment explanation
Indices: 51743189--51743438 Score: 500
Period size: 83 Copynumber: 3.0 Consensus size: 83
51743179 GTCGTTGTTG
51743189 AGAGATGAAGCCTATCAGTGGTGGCTTACTGTGAAAGAGGGTACTCAGCCCGATCGATTAACTTG
1 AGAGATGAAGCCTATCAGTGGTGGCTTACTGTGAAAGAGGGTACTCAGCCCGATCGATTAACTTG
51743254 GGAGTTTTTTAAAAATGT
66 GGAGTTTTTTAAAAATGT
51743272 AGAGATGAAGCCTATCAGTGGTGGCTTACTGTGAAAGAGGGTACTCAGCCCGATCGATTAACTTG
1 AGAGATGAAGCCTATCAGTGGTGGCTTACTGTGAAAGAGGGTACTCAGCCCGATCGATTAACTTG
51743337 GGAGTTTTTTAAAAATGT
66 GGAGTTTTTTAAAAATGT
51743355 AGAGATGAAGCCTATCAGTGGTGGCTTACTGTGAAAGAGGGTACTCAGCCCGATCGATTAACTTG
1 AGAGATGAAGCCTATCAGTGGTGGCTTACTGTGAAAGAGGGTACTCAGCCCGATCGATTAACTTG
51743420 GGAGTTTTTTAAAAATGT
66 GGAGTTTTTTAAAAATGT
51743438 A
1 A
51743439 TTCCAAGGGA
Statistics
Matches: 167, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 167 1.00
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (83 bp):
AGAGATGAAGCCTATCAGTGGTGGCTTACTGTGAAAGAGGGTACTCAGCCCGATCGATTAACTTG
GGAGTTTTTTAAAAATGT
Found at i:51756698 original size:9 final size:10
Alignment explanation
Indices: 51756671--51756697 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
51756661 ATATTGATTG
51756671 TTATTTTTAA
1 TTATTTTTAA
51756681 TTATTTTTAA
1 TTATTTTTAA
51756691 TTATTTT
1 TTATTTT
51756698 ATGGGTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (10 bp):
TTATTTTTAA
Found at i:51757420 original size:48 final size:50
Alignment explanation
Indices: 51757355--51757473 Score: 143
Period size: 50 Copynumber: 2.4 Consensus size: 50
51757345 GTAGATGGAA
* *
51757355 GACTAAGATGATAAAACAAGTATC-C-AAATGAGTTGATAGAAGCTTGAT
1 GACTGAGATGATAAAACAAGTATCTCTAAATGAGTTGATAGAAGCCTGAT
* * * * * *
51757403 GATTGAGATAATAAAACAAGTCTCTCTACATGATTTGATGGAAGCCTGAT
1 GACTGAGATGATAAAACAAGTATCTCTAAATGAGTTGATAGAAGCCTGAT
*
51757453 GACTGAAATGATAAAACAAGT
1 GACTGAGATGATAAAACAAGT
51757474 TTTGTTTGCA
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
48 20 0.34
49 1 0.02
50 37 0.64
ACGTcount: A:0.42, C:0.12, G:0.20, T:0.26
Consensus pattern (50 bp):
GACTGAGATGATAAAACAAGTATCTCTAAATGAGTTGATAGAAGCCTGAT
Found at i:51769281 original size:17 final size:18
Alignment explanation
Indices: 51769259--51769292 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
51769249 ATACTAATCA
*
51769259 TACA-TTATTAATCATAT
1 TACATTTATGAATCATAT
51769276 TACATTTATGAATCATA
1 TACATTTATGAATCATA
51769293 CCTCAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.41, C:0.12, G:0.03, T:0.44
Consensus pattern (18 bp):
TACATTTATGAATCATAT
Found at i:51770575 original size:35 final size:35
Alignment explanation
Indices: 51770464--51770577 Score: 140
Period size: 35 Copynumber: 3.3 Consensus size: 35
51770454 CAAGGTAACT
* * *
51770464 TCACATATAACCGAATATACAAGTTTAATATAAGC
1 TCACATGTAACCAAATATACAAGTTCAATATAAGC
* * *
51770499 TCACATTTAATCAAATACT-CAAGTTCAATATAACC
1 TCACATGTAACCAAATA-TACAAGTTCAATATAAGC
*
51770534 TCACATGTAGCCAAATATACAAGTTCAATATAAGC
1 TCACATGTAACCAAATATACAAGTTCAATATAAGC
*
51770569 TTACATGTA
1 TCACATGTA
51770578 CTTACCTATG
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
34 1 0.01
35 65 0.97
36 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.30
Consensus pattern (35 bp):
TCACATGTAACCAAATATACAAGTTCAATATAAGC
Found at i:51773155 original size:39 final size:39
Alignment explanation
Indices: 51773108--51774017 Score: 1709
Period size: 39 Copynumber: 23.3 Consensus size: 39
51773098 GGATTAAGAT
*
51773108 CCGAAGGCATTTG-TGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCA-TTGCTGCGAGTTACTAATTCCGGGCTAAGC
51773147 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
1 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
51773186 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
1 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
51773225 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
1 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
51773264 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
1 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
51773303 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
1 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
51773342 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
1 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
51773381 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
1 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
51773420 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
1 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
51773459 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
1 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
51773498 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
1 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
51773537 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
1 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
51773576 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
1 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
51773615 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
1 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
51773654 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
1 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
51773693 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
1 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
51773732 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
1 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
51773771 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
1 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
51773810 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
1 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
51773849 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
1 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
51773888 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
1 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
* *
51773927 CCGAAGGCATTGCTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAG-C
* *
51773967 CCGAAGGCATTTG-TGCGAGTTACT-ATAACCGGGCTATGTC
1 CCGAAGGCA-TTGCTGCGAGTTACTAAT-TCCGGGCTAAG-C
51774007 CCGAAGGCATT
1 CCGAAGGCATT
51774018 TGAACGAGGA
Statistics
Matches: 860, Mismatches: 7, Indels: 8
0.98 0.01 0.01
Matches are distributed among these distances:
38 3 0.00
39 814 0.95
40 40 0.05
41 3 0.00
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
CCGAAGGCATTGCTGCGAGTTACTAATTCCGGGCTAAGC
Found at i:51776043 original size:27 final size:25
Alignment explanation
Indices: 51776013--51776078 Score: 60
Period size: 27 Copynumber: 2.5 Consensus size: 25
51776003 AAAATCATCT
51776013 CTTTCAAAAACCAAGGTTTAGAAAAAA
1 CTTTCAAAAACCAA--TTTAGAAAAAA
** * *
51776040 CTTTTGAAAACTCAATTTTGAGAAAA
1 CTTTCAAAAAC-CAATTTAGAAAAAA
51776066 CTTTTCAAAAACC
1 C-TTTCAAAAACC
51776079 CATTCCACAA
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
26 11 0.35
27 17 0.55
28 3 0.10
ACGTcount: A:0.45, C:0.17, G:0.09, T:0.29
Consensus pattern (25 bp):
CTTTCAAAAACCAATTTAGAAAAAA
Found at i:51784868 original size:14 final size:15
Alignment explanation
Indices: 51784837--51784874 Score: 69
Period size: 14 Copynumber: 2.6 Consensus size: 15
51784827 TAAGTAAGCA
51784837 AATTAAATGTTGATG
1 AATTAAATGTTGATG
51784852 AATTAAATGTT-ATG
1 AATTAAATGTTGATG
51784866 AATTAAATG
1 AATTAAATG
51784875 GTAAGTAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.45, C:0.00, G:0.16, T:0.39
Consensus pattern (15 bp):
AATTAAATGTTGATG
Found at i:51796297 original size:43 final size:43
Alignment explanation
Indices: 51796249--51796332 Score: 105
Period size: 43 Copynumber: 2.0 Consensus size: 43
51796239 TGAGGTATGT
* *
51796249 AGCATCCGAGGTCATTGAGAGGTCCGATTTCATTATGGATGAG
1 AGCATCCGAGCTCATTGAGAGGTCCGATTTCATGATGGATGAG
** * * *
51796292 AGCATCTTAGCTCGTTGAGTGGTTCGATTTCATGATGGATG
1 AGCATCCGAGCTCATTGAGAGGTCCGATTTCATGATGGATG
51796333 TGATTCATGT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.32
Consensus pattern (43 bp):
AGCATCCGAGCTCATTGAGAGGTCCGATTTCATGATGGATGAG
Found at i:51802611 original size:43 final size:43
Alignment explanation
Indices: 51802557--51802641 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
51802547 TGAGGTATAT
*
51802557 AGCATCAGAGCTCGTTGAGAGGT-CAGAGTTCATTATGGATGCA
1 AGCATCAGAGCTCGTTGAGAGGTCCA-AGTTCATGATGGATGCA
* * *
51802600 AGCATCTGAGCTCGTTGAGTGGTCCATGTTCATGATGGATGC
1 AGCATCAGAGCTCGTTGAGAGGTCCAAGTTCATGATGGATGC
51802642 GATTCATATA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 35 0.95
44 2 0.05
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.28
Consensus pattern (43 bp):
AGCATCAGAGCTCGTTGAGAGGTCCAAGTTCATGATGGATGCA
Found at i:51807397 original size:18 final size:18
Alignment explanation
Indices: 51807343--51807397 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 18
51807333 CTTGGCTCAT
* *
51807343 TGCAATAACAATAAATAG
1 TGCAGTAACAATAAACAG
*
51807361 TGCAGTAACAATAATCAG
1 TGCAGTAACAATAAACAG
* *
51807379 TGCAGTTACAGTAAACAG
1 TGCAGTAACAATAAACAG
51807397 T
1 T
51807398 ATGCAAATCC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.45, C:0.15, G:0.16, T:0.24
Consensus pattern (18 bp):
TGCAGTAACAATAAACAG
Found at i:51807759 original size:27 final size:27
Alignment explanation
Indices: 51807693--51807973 Score: 237
Period size: 27 Copynumber: 10.4 Consensus size: 27
51807683 ATACACATAC
* * * *
51807693 ATCACATAGGGGCAAAATTGTCGTTCT
1 ATCACATAAGGGCAAAACTGTCATTTT
* *
51807720 A-CTCATAATGGCAAAACTGTCATTTT
1 ATCACATAAGGGCAAAACTGTCATTTT
* *
51807746 ACCTCATAAGGGCAAAA-TCGTCATTTT
1 ATCACATAAGGGCAAAACT-GTCATTTT
**
51807773 ATCACATAAGGGCAAAACAATCATTTT
1 ATCACATAAGGGCAAAACTGTCATTTT
** * * *
51807800 GCCACATAATGGTAAAACCGTCATTTT
1 ATCACATAAGGGCAAAACTGTCATTTT
* **
51807827 AGCTTATAAGGGCAAAA-TCGTCATTTT
1 ATCACATAAGGGCAAAACT-GTCATTTT
**
51807854 ATCACATAAGGGCAAAACAATCATTTT
1 ATCACATAAGGGCAAAACTGTCATTTT
** * * *
51807881 GCCACATAATGGTAAAACCGTCATTTT
1 ATCACATAAGGGCAAAACTGTCATTTT
* **
51807908 AGCTTATAAGGGCAAAA-TCGTCATTTT
1 ATCACATAAGGGCAAAACT-GTCATTTT
*
51807935 ATCACATAAGGGCAAAACAGTCATTTT
1 ATCACATAAGGGCAAAACTGTCATTTT
*
51807962 ATCTCATAAGGG
1 ATCACATAAGGG
51807974 TTCAGGTAGG
Statistics
Matches: 200, Mismatches: 47, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
26 21 0.10
27 179 0.89
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.30
Consensus pattern (27 bp):
ATCACATAAGGGCAAAACTGTCATTTT
Found at i:51807787 original size:54 final size:54
Alignment explanation
Indices: 51807697--51807973 Score: 272
Period size: 54 Copynumber: 5.1 Consensus size: 54
51807687 ACATACATCA
* * * * * * *
51807697 CATAGGGGCAAAATTGTCGTTCTA-CTCATAATGGCAAAACTGTCATTTTACCT
1 CATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAACAGTCATTTTACCT
* * *
51807750 CATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAACAATCATTTTGCCA
1 CATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAACAGTCATTTTACCT
* * * * ** * *
51807804 CATAATGGTAAAACCGTCATTTTAGCTTATAAGGGCAAAATC-GTCATTTTATCA
1 CATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAA-CAGTCATTTTACCT
* ** * * * *
51807858 CATAAGGGCAAAA-CAATCATTTTGCCACATAATGGTAAAACCGTCATTTTAGCT
1 CATAAGGGCAAAATC-GTCATTTTATCACATAAGGGCAAAACAGTCATTTTACCT
* *
51807912 TATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAACAGTCATTTTATCT
1 CATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAACAGTCATTTTACCT
51807966 CATAAGGG
1 CATAAGGG
51807974 TTCAGGTAGG
Statistics
Matches: 180, Mismatches: 39, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
53 22 0.12
54 156 0.87
55 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.30
Consensus pattern (54 bp):
CATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAACAGTCATTTTACCT
Found at i:51807817 original size:81 final size:81
Alignment explanation
Indices: 51807723--51807961 Score: 433
Period size: 81 Copynumber: 3.0 Consensus size: 81
51807713 TCGTTCTACT
* * * *
51807723 CATAATGGCAAAACTGTCATTTTACCTCATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAA
1 CATAATGGTAAAACCGTCATTTTAGCTTATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAA
51807788 AACAATCATTTTGCCA
66 AACAATCATTTTGCCA
51807804 CATAATGGTAAAACCGTCATTTTAGCTTATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAA
1 CATAATGGTAAAACCGTCATTTTAGCTTATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAA
51807869 AACAATCATTTTGCCA
66 AACAATCATTTTGCCA
51807885 CATAATGGTAAAACCGTCATTTTAGCTTATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAA
1 CATAATGGTAAAACCGTCATTTTAGCTTATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAA
*
51807950 AACAGTCATTTT
66 AACAATCATTTT
51807962 ATCTCATAAG
Statistics
Matches: 153, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
81 153 1.00
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30
Consensus pattern (81 bp):
CATAATGGTAAAACCGTCATTTTAGCTTATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAA
AACAATCATTTTGCCA
Found at i:51811007 original size:16 final size:17
Alignment explanation
Indices: 51810983--51811016 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
51810973 TAATAACAAG
51810983 ATTCATCTTAGGT-TTC
1 ATTCATCTTAGGTATTC
*
51810999 ATTCCTCTTAGGTATTC
1 ATTCATCTTAGGTATTC
51811016 A
1 A
51811017 GGGGTTTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.47
Consensus pattern (17 bp):
ATTCATCTTAGGTATTC
Found at i:51812486 original size:18 final size:19
Alignment explanation
Indices: 51812456--51812506 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 19
51812446 CTTGGCCCAT
*
51812456 TGCAGTAATAGTAAAT-AG
1 TGCAGTAACAGTAAATCAG
*
51812474 TGTAGTAACAGT-AATCAG
1 TGCAGTAACAGTAAATCAG
*
51812492 TGCAATAACAGTAAA
1 TGCAGTAACAGTAAA
51812507 CAATATGCAG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 3 0.11
18 22 0.81
19 2 0.07
ACGTcount: A:0.45, C:0.10, G:0.20, T:0.25
Consensus pattern (19 bp):
TGCAGTAACAGTAAATCAG
Found at i:51812887 original size:27 final size:27
Alignment explanation
Indices: 51812835--51813083 Score: 160
Period size: 27 Copynumber: 9.4 Consensus size: 27
51812825 ATACACATAC
51812835 ACCACA-AAGGGGCAAAAT-AGTCATTTT
1 ACCACATAA-GGGCAAAATCA-TCATTTT
* *
51812862 ACCTCATAAGGGCAAAATCATAATTTT
1 ACCACATAAGGGCAAAATCATCATTTT
*
51812889 ATCACATAAGGGCAAAAT-AGTCATTTT
1 ACCACATAAGGGCAAAATCA-TCATTTT
* *
51812916 GCCACATAAGGGCAAAA-CTGTCATTTT
1 ACCACATAAGGGCAAAATC-ATCATTTT
* * * *
51812943 AGCTCATAA-AGCAAAATCGTCATTTT
1 ACCACATAAGGGCAAAATCATCATTTT
* * * *
51812969 ATCGCATAAGAG-AAAAACATCATTTT
1 ACCACATAAGGGCAAAATCATCATTTT
* * *
51812995 GCCACATAAGGGCAAAATCGTCATTTA
1 ACCACATAAGGGCAAAATCATCATTTT
* *
51813022 ATCACCTAAGGG-AAAA--A-CATTTT
1 ACCACATAAGGGCAAAATCATCATTTT
** * *
51813045 GTCACCTAAGGG-AAAAACAATCATTTT
1 ACCACATAAGGGCAAAATC-ATCATTTT
* *
51813072 ATCTCATAAGGG
1 ACCACATAAGGG
51813084 TTCAGGTACG
Statistics
Matches: 178, Mismatches: 32, Indels: 24
0.76 0.14 0.10
Matches are distributed among these distances:
23 20 0.11
26 47 0.26
27 108 0.61
28 3 0.02
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (27 bp):
ACCACATAAGGGCAAAATCATCATTTT
Found at i:51812907 original size:54 final size:53
Alignment explanation
Indices: 51812835--51813083 Score: 202
Period size: 53 Copynumber: 4.7 Consensus size: 53
51812825 ATACACATAC
* *
51812835 ACCACA-AAGGGGCAAAATAGTCATTTTACCTCATAAGGGCAAAATCATAATTTT
1 ACCACATAA-GGGCAAAATAGTCATTTTACCACATAAGGGCAAAA-CATCATTTT
* * *
51812889 ATCACATAAGGGCAAAATAGTCATTTTGCCACATAAGGGCAAAACTGTCATTTT
1 ACCACATAAGGGCAAAATAGTCATTTTACCACATAAGGGCAAAAC-ATCATTTT
* * * * * * * *
51812943 AGCTCATAA-AGCAAAATCGTCATTTTATCGCATAAGAGAAAAACATCATTTT
1 ACCACATAAGGGCAAAATAGTCATTTTACCACATAAGGGCAAAACATCATTTT
* * * * *
51812995 GCCACATAAGGGCAAAATCGTCATTTAATCACCTAAGGG-AAAA-A-CATTTT
1 ACCACATAAGGGCAAAATAGTCATTTTACCACATAAGGGCAAAACATCATTTT
** * * * * * *
51813045 GTCACCTAAGGGAAAAACAATCATTTTATCTCATAAGGG
1 ACCACATAAGGGCAAAATAGTCATTTTACCACATAAGGG
51813084 TTCAGGTACG
Statistics
Matches: 160, Mismatches: 32, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
50 36 0.22
51 1 0.01
52 17 0.11
53 53 0.33
54 51 0.32
55 2 0.01
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (53 bp):
ACCACATAAGGGCAAAATAGTCATTTTACCACATAAGGGCAAAACATCATTTT
Found at i:51812964 original size:26 final size:27
Alignment explanation
Indices: 51812844--51813038 Score: 166
Period size: 27 Copynumber: 7.3 Consensus size: 27
51812834 CACCACAAAG
* * *
51812844 GGGCAAAATAGTCATTTTACCTCATAA
1 GGGCAAAATCGTCATTTTAGCACATAA
* * *
51812871 GGGCAAAATCATAATTTTATCACATAA
1 GGGCAAAATCGTCATTTTAGCACATAA
*
51812898 GGGCAAAATAGTCATTTT-GCCACATAA
1 GGGCAAAATCGTCATTTTAG-CACATAA
*
51812925 GGGCAAAA-CTGTCATTTTAGCTCATAA
1 GGGCAAAATC-GTCATTTTAGCACATAA
* * *
51812952 -AGCAAAATCGTCATTTTATCGCATAA
1 GGGCAAAATCGTCATTTTAGCACATAA
* * *
51812978 GAG-AAAAACATCATTTT-GCCACATAA
1 GGGCAAAATCGTCATTTTAG-CACATAA
* * *
51813004 GGGCAAAATCGTCATTTAATCACCTAA
1 GGGCAAAATCGTCATTTTAGCACATAA
*
51813031 GGGAAAAA
1 GGGCAAAA
51813039 CATTTTGTCA
Statistics
Matches: 135, Mismatches: 25, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
26 41 0.30
27 93 0.69
28 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (27 bp):
GGGCAAAATCGTCATTTTAGCACATAA
Found at i:51813042 original size:23 final size:23
Alignment explanation
Indices: 51813016--51813063 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
51813006 GCAAAATCGT
51813016 CATTTAATCACCTAAGGGAAAAA
1 CATTTAATCACCTAAGGGAAAAA
**
51813039 CATTTTGTCACCTAAGGGAAAAA
1 CATTTAATCACCTAAGGGAAAAA
51813062 CA
1 CA
51813064 ATCATTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.44, C:0.19, G:0.15, T:0.23
Consensus pattern (23 bp):
CATTTAATCACCTAAGGGAAAAA
Found at i:51827124 original size:15 final size:16
Alignment explanation
Indices: 51827089--51827126 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
51827079 ATGATTACTG
51827089 ATTTTATGTTTAGAAT
1 ATTTTATGTTTAGAAT
* *
51827105 ATTTTAT-TTTGGACT
1 ATTTTATGTTTAGAAT
51827120 ATTTTAT
1 ATTTTAT
51827127 AGCCGCTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.26, C:0.03, G:0.11, T:0.61
Consensus pattern (16 bp):
ATTTTATGTTTAGAAT
Found at i:51829910 original size:33 final size:33
Alignment explanation
Indices: 51829839--51829911 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 33
51829829 TCTATCGGGG
*
51829839 TAGTAAACACGGAATAAAGTAAGTCTTTCAAGA
1 TAGTAAACACGAAATAAAGTAAGTCTTTCAAGA
* * *
51829872 CAGTAAACACGAAATAGAGTAAGT-TTGTCAGGA
1 TAGTAAACACGAAATAAAGTAAGTCTT-TCAAGA
51829905 TAGTAAA
1 TAGTAAA
51829912 TTAGGAACAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
32 2 0.06
33 32 0.94
ACGTcount: A:0.45, C:0.11, G:0.21, T:0.23
Consensus pattern (33 bp):
TAGTAAACACGAAATAAAGTAAGTCTTTCAAGA
Found at i:51831821 original size:68 final size:68
Alignment explanation
Indices: 51831655--51831830 Score: 159
Period size: 68 Copynumber: 2.6 Consensus size: 68
51831645 TAGTACCACT
* * * *
51831655 CATGCGACCTAGC--CA-ATTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCTACATATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAAT
*
51831717 CACT
65 CACA
* * *
51831721 CATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGT
1 CATGCGACCTAGCTACATATATATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGA
51831783 ATCACA
63 ATCACA
*
51831789 CATGTGACCTAGCTACAATATAGTATCTCGTAGC-CTTCTTGT
1 CATGCGACCTAGCTAC-ATATA-TATCTCGTAGCTC-TCTTGT
51831831 ACACATGATG
Statistics
Matches: 90, Mismatches: 11, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
66 13 0.14
67 1 0.01
68 35 0.39
69 9 0.10
70 6 0.07
71 26 0.29
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (68 bp):
CATGCGACCTAGCTACATATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATC
ACA
Found at i:51833758 original size:17 final size:18
Alignment explanation
Indices: 51833714--51833747 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
51833704 TTTAATTGGA
51833714 AAATTAATTTATCTAATT
1 AAATTAATTTATCTAATT
51833732 AAATTAATTTAT-TAAT
1 AAATTAATTTATCTAAT
51833748 AATATTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (18 bp):
AAATTAATTTATCTAATT
Found at i:51848684 original size:10 final size:10
Alignment explanation
Indices: 51848666--51848717 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
51848656 ATTATTAACA
*
51848666 TAATGAATTT
1 TAATTAATTT
51848676 TAATTAATTTT
1 TAATTAA-TTT
51848687 ATAATTAATTT
1 -TAATTAATTT
*
51848698 TGATTAATTT
1 TAATTAATTT
*
51848708 TGATT-ATTT
1 TAATTAATTT
51848717 T
1 T
51848718 CCACAGATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
9 5 0.13
10 20 0.53
11 6 0.16
12 7 0.18
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.60
Consensus pattern (10 bp):
TAATTAATTT
Found at i:51848690 original size:22 final size:22
Alignment explanation
Indices: 51848665--51848708 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
51848655 AATTATTAAC
51848665 ATAATGAATTTTAATTAATTTT
1 ATAATGAATTTTAATTAATTTT
* *
51848687 ATAATTAATTTTGATTAATTTT
1 ATAATGAATTTTAATTAATTTT
51848709 GATTATTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (22 bp):
ATAATGAATTTTAATTAATTTT
Found at i:51852835 original size:26 final size:26
Alignment explanation
Indices: 51852806--51852860 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
51852796 TTTACAGTTT
51852806 TACCCCAAGGAGATAAATT-ACCGAAA
1 TACCCCAAGG-GATAAATTGACCGAAA
* * *
51852832 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCAAGGGATAAATTGACCGAAA
51852858 TAC
1 TAC
51852861 ATGTTTGACT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.40, C:0.24, G:0.15, T:0.22
Consensus pattern (26 bp):
TACCCCAAGGGATAAATTGACCGAAA
Found at i:51853245 original size:33 final size:34
Alignment explanation
Indices: 51853168--51853248 Score: 85
Period size: 33 Copynumber: 2.4 Consensus size: 34
51853158 TATGGGCCAT
*
51853168 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
* * ** *
51853202 AATGTAATCTGAA-AA-GGGCTCTGGCCTAGTATC
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGT-TC
51853235 ACTGTTATCTGAAT
1 ACTGTTATCTGAAT
51853249 GGGCTTAGGC
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
32 12 0.32
33 14 0.38
34 11 0.30
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.31
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
Found at i:51858995 original size:17 final size:16
Alignment explanation
Indices: 51858964--51858997 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
51858954 AAATATTATG
51858964 AAATAAAAACAAACAA
1 AAATAAAAACAAACAA
*
51858980 AAATAAACATCAAACAA
1 AAATAAA-AACAAACAA
51858997 A
1 A
51858998 TGCCATCCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.76, C:0.15, G:0.00, T:0.09
Consensus pattern (16 bp):
AAATAAAAACAAACAA
Found at i:51863265 original size:46 final size:46
Alignment explanation
Indices: 51863212--51863387 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
51863202 TATTTGGGCA
51863212 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAGCG
* * * * *
51863258 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATG---CGA-GCG
* * * * *
51863305 TCCGAGCTTGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAGCG
* * *
51863351 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGG
51863388 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 63 0.60
47 30 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAGCG
Found at i:51863367 original size:93 final size:93
Alignment explanation
Indices: 51863208--51863380 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
51863198 GGAATATTTG
* * *
51863208 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTCAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
51863273 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAGATGTAACTA
* * * *
51863301 GGCATCCGAGCTTGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTCAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
51863366 TTGAGTCCAAGTTCG
66 TTGAGTCCAAGTTCG
51863381 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTCAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCAAGTTCGTGAGATGTAACTA
Found at i:51866280 original size:15 final size:15
Alignment explanation
Indices: 51866241--51866320 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
51866231 GTATCTTGGG
*
51866241 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
51866256 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
51866271 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
51866286 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
51866301 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
51866315 TTTCTT
1 TTTCTT
51866321 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:51866310 original size:30 final size:30
Alignment explanation
Indices: 51866232--51866319 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
51866222 CATAGTATCG
* * *
51866232 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
51866262 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
51866292 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
51866320 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:51867905 original size:49 final size:49
Alignment explanation
Indices: 51867848--51867944 Score: 176
Period size: 49 Copynumber: 2.0 Consensus size: 49
51867838 AGAAACCATG
* *
51867848 GCTAGGGTTTTTCAAGCTTCCAAGCTCGATTGTAAGTCCGTTCTAGCCA
1 GCTAGGGTTTTCCAAACTTCCAAGCTCGATTGTAAGTCCGTTCTAGCCA
51867897 GCTAGGGTTTTCCAAACTTCCAAGCTCGATTGTAAGTCCGTTCTAGCC
1 GCTAGGGTTTTCCAAACTTCCAAGCTCGATTGTAAGTCCGTTCTAGCC
51867945 TCGTTTTTAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.32
Consensus pattern (49 bp):
GCTAGGGTTTTCCAAACTTCCAAGCTCGATTGTAAGTCCGTTCTAGCCA
Found at i:51869108 original size:46 final size:46
Alignment explanation
Indices: 51869058--51869230 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
51869048 TGGTTGAGCA
* *
51869058 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGTTGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGTTACGAACG
* * * * * * *
51869104 TCCGAACTTGTTGAGTTGAGTCCGAGTTC-GTGAAAT-GTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGTTACGA-ACG
* *
51869151 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGTTACGAACG
* *
51869197 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
51869231 AGGGCGGGTT
Statistics
Matches: 101, Mismatches: 21, Indels: 10
0.77 0.16 0.08
Matches are distributed among these distances:
45 1 0.01
46 66 0.65
47 33 0.33
48 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGTTACGAACG
Found at i:51869214 original size:93 final size:93
Alignment explanation
Indices: 51869055--51869225 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
51869045 GGATGGTTGA
* * * * * *
51869055 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGTTGCGAATGTCCGAACTTGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
51869120 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
51869148 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
51869213 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
51869226 ACTTAAGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:51876605 original size:42 final size:42
Alignment explanation
Indices: 51876528--51876607 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 42
51876518 GTGCAAGGTT
* *
51876528 CACACGGCCAAGACACACACCTATGTTTTAGGCCGTGTAGCA
1 CACACGGCCAAGACACACACCCATGTTCTAGGCCGTGTAGCA
** *
51876570 CACACGGCTGAGACATACACCCATGTCTCTA-GCCGTGT
1 CACACGGCCAAGACACACACCCATGT-TCTAGGCCGTGT
51876608 GCCTAATTCT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
42 29 0.91
43 3 0.09
ACGTcount: A:0.26, C:0.33, G:0.21, T:0.20
Consensus pattern (42 bp):
CACACGGCCAAGACACACACCCATGTTCTAGGCCGTGTAGCA
Found at i:51877996 original size:43 final size:42
Alignment explanation
Indices: 51877949--51878061 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 42
51877939 GCGATTACGT
* *
51877949 GTAAGACCACGTCTAGGACGTTGGCATCGATATGTGTTTACAA
1 GTAAGACCACGTCT-GGACGTTGGCATCGATATGAGGTTACAA
* * *
51877992 GTAAGAACATGTCTGGTAC-TGTGGCATCGATATGAGGTTACAT
1 GTAAGACCACGTCTGG-ACGT-TGGCATCGATATGAGGTTACAA
* *
51878035 GTAATACCACATCTGGGACGTTGGCAT
1 GTAAGACCACGTCT-GGACGTTGGCAT
51878062 TGTATGATAT
Statistics
Matches: 57, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
42 3 0.05
43 51 0.89
44 3 0.05
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (42 bp):
GTAAGACCACGTCTGGACGTTGGCATCGATATGAGGTTACAA
Found at i:51883245 original size:22 final size:22
Alignment explanation
Indices: 51883220--51883263 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
51883210 AATTATTAAC
*
51883220 ATAATTAATT-TTAATTAATTTT
1 ATAATAAATTGTT-ATTAATTTT
51883242 ATAATAAATTGTTATTAATTTT
1 ATAATAAATTGTTATTAATTTT
51883264 GATTATTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 18 0.90
23 2 0.10
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
ATAATAAATTGTTATTAATTTT
Found at i:51888510 original size:46 final size:45
Alignment explanation
Indices: 51888442--51888612 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 45
51888432 GTAACCCGCC
51888442 CATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCAT
* * *
51888487 CAATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 C-ATAAGCGAACTCAGACTCAACTCAACGAGCTCGG--G-C-A-TTCGCAT
* * * *
51888537 C-TCA-CGAACTCAGACTCCACTCAATGAGCTCGGACATTCGCAT
1 CATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCAT
* *
51888580 CCATAAGTGAACTC-GACTCAACTCAATGAGCTC
1 -CATAAGCGAACTCAGACTCAACTCAACGAGCTC
51888613 AGATGCCCAA
Statistics
Matches: 103, Mismatches: 13, Indels: 20
0.76 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 21 0.20
46 38 0.37
47 25 0.24
48 3 0.03
49 1 0.01
50 5 0.05
51 2 0.02
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.20
Consensus pattern (45 bp):
CATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:51893954 original size:16 final size:16
Alignment explanation
Indices: 51893933--51893963 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51893923 AAACTCTCTT
*
51893933 TCATACTTGGTAACTG
1 TCATACTCGGTAACTG
51893949 TCATACTCGGTAACT
1 TCATACTCGGTAACT
51893964 CTTTACGCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (16 bp):
TCATACTCGGTAACTG
Found at i:51895961 original size:38 final size:38
Alignment explanation
Indices: 51895918--51895993 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
51895908 ACAGTTAATG
51895918 AAGATTACCGAAGTGAACTAATAACCTATAAGTAGATT
1 AAGATTACCGAAGTGAACTAATAACCTATAAGTAGATT
51895956 AAGATTACCGAAGTGAACTAATAACCTATAAGTAGATT
1 AAGATTACCGAAGTGAACTAATAACCTATAAGTAGATT
51895994 TAATTAATTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (38 bp):
AAGATTACCGAAGTGAACTAATAACCTATAAGTAGATT
Found at i:51920696 original size:40 final size:40
Alignment explanation
Indices: 51920598--51920821 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
51920588 TCCTCGTTCA
* * * * *
51920598 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
51920637 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
51920677 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
51920717 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
51920757 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
51920797 AAGGCCTTC-GGATCTTAATCCGGAT
1 AATGCCTTCGGGA-CTTAACCCGGAT
51920822 ATATTCACTT
Statistics
Matches: 171, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 37 0.22
40 134 0.78
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:51920844 original size:80 final size:80
Alignment explanation
Indices: 51920601--51920860 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
51920591 TCGTTCAAAT
* * * ** * * * *
51920601 GCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* * *
51920665 ACAACTCGCACGAAT
66 ATAACTAGCACGAAA
* * *
51920680 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* *
51920745 ATAACTCGCACGAAT
66 ATAACTAGCACGAAA
** * *
51920760 GCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGATAT
1 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATAT
* *
51920824 ATTCACTTAGCAC-AAA
65 AATAAC-TAGCACGAAA
* *
51920840 GCCTTCAGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
51920861 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
79 33 0.21
80 119 0.76
81 5 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
ATAACTAGCACGAAA
Found at i:51920844 original size:120 final size:118
Alignment explanation
Indices: 51920596--51920860 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 118
51920586 GCTCCTCGTT
* * *
51920596 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAA-GCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGA
* * * *
51920661 TTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
65 TTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATAACAACTAGCA
* * * *
51920715 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 C-AAAGCCTTCGGGACTTAGCCCGGATTTAATAACTCACAC-AATGCCTTCGGGACATAACCCGG
** * * *
51920780 ATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCA
64 ATTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATATA-ACAAC-TAGCA
*
51920836 CAAAGCCTTCAGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
51920861 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
119 35 0.29
120 81 0.66
121 6 0.05
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (118 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGAT
TTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATAACAACTAGCA
Done.