Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 177 of 235
Found at i:59991484 original size:38 final size:38
Alignment explanation
Indices: 59991441--59991517 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
59991431 TTTTAGTTGT
59991441 AGTTGACATTTTTATTAAAAGTAAAGACTAAATTGATA
1 AGTTGACATTTTTATTAAAAGTAAAGACTAAATTGATA
59991479 AGTTGACATTTTTATTAAAAGTAAAGACTAAATTGATA
1 AGTTGACATTTTTATTAAAAGTAAAGACTAAATTGATA
59991517 A
1 A
59991518 AAAATATAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.45, C:0.05, G:0.13, T:0.36
Consensus pattern (38 bp):
AGTTGACATTTTTATTAAAAGTAAAGACTAAATTGATA
Found at i:60002032 original size:18 final size:17
Alignment explanation
Indices: 60001999--60002032 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
60001989 ATAAATGGGC
*
60001999 TAATTTAGACTTTATTA
1 TAATTTAGAATTTATTA
60002016 TAATTTAGAGATTTATT
1 TAATTTAGA-ATTTATT
60002033 TTATTCTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.35, C:0.03, G:0.09, T:0.53
Consensus pattern (17 bp):
TAATTTAGAATTTATTA
Found at i:60009132 original size:24 final size:22
Alignment explanation
Indices: 60009105--60009148 Score: 70
Period size: 24 Copynumber: 1.9 Consensus size: 22
60009095 AATCATTTTG
60009105 TTAAAAATTTATCTATTTATATTA
1 TTAAAAATTTAT-T-TTTATATTA
60009129 TTAAAAATTTATTTTTATAT
1 TTAAAAATTTATTTTTATAT
60009149 GTCAGCATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.35
23 1 0.05
24 12 0.60
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (22 bp):
TTAAAAATTTATTTTTATATTA
Found at i:60020968 original size:39 final size:40
Alignment explanation
Indices: 60020908--60021094 Score: 281
Period size: 40 Copynumber: 4.7 Consensus size: 40
60020898 ATTCGGATTG
* *
60020908 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
60020948 A-ATTCCGGGCTGAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
60020987 ATATCCAGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
60021027 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT-CT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
60021066 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
60021095 AGCTAGTAGC
Statistics
Matches: 134, Mismatches: 10, Indels: 7
0.89 0.07 0.05
Matches are distributed among these distances:
39 65 0.49
40 69 0.51
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:60021020 original size:40 final size:40
Alignment explanation
Indices: 60020912--60021117 Score: 278
Period size: 40 Copynumber: 5.2 Consensus size: 40
60020902 GGATTGATAA
* *
60020912 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
60020952 CCGGGCTGAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
60020991 CCAGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
60021031 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT-CTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
60021070 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
60021110 CC-GGCTAA
1 CCGGGCTAA
60021118 ACTCCGAAGG
Statistics
Matches: 150, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
38 1 0.01
39 74 0.49
40 75 0.50
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:60021108 original size:79 final size:79
Alignment explanation
Indices: 60020908--60021127 Score: 288
Period size: 79 Copynumber: 2.8 Consensus size: 79
60020898 ATTCGGATTG
*
60020908 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACTA-ATTCCGGGCTGAGCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAG-CTATA-TCCGGGCTAAGCCCGAAGGC
60020971 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * * * *
60020987 ATATCCAGGCTAAGTCCTGAAGGCATTTGTGCGAGTTA-CTATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TAGCTATATCCGGGCTAAG-CCCGAAGGC
60021051 ATTTGTGCGAGTT-CT
64 ATTTGTGCGAGTTACT
* *
60021066 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTAGCTATATCC-GGCTAAACTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAGCTATATCCGGGCTAAGC-CCGAAGG
60021128 TACTTGGTTT
Statistics
Matches: 122, Mismatches: 13, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
77 1 0.01
78 15 0.12
79 82 0.67
80 24 0.20
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAGCTATATCCGGGCTAAGCCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:60021116 original size:39 final size:39
Alignment explanation
Indices: 60020912--60021117 Score: 265
Period size: 39 Copynumber: 5.2 Consensus size: 39
60020902 GGATTGATAA
*
60020912 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATA-T
*
60020952 CCGGGCTGAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* * *
60020991 CCAGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
60021031 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
* *
60021070 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATAT
60021110 CC-GGCTAA
1 CCGGGCTAA
60021118 ACTCCGAAGG
Statistics
Matches: 149, Mismatches: 13, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
39 75 0.50
40 74 0.50
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:60023306 original size:5 final size:5
Alignment explanation
Indices: 60023298--60023325 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
60023288 CAATCACAAC
60023298 CAAAA CAAAA CAAAA CAAAA CAAAA CAA
1 CAAAA CAAAA CAAAA CAAAA CAAAA CAA
60023326 GTCAATACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.79, C:0.21, G:0.00, T:0.00
Consensus pattern (5 bp):
CAAAA
Found at i:60031280 original size:40 final size:40
Alignment explanation
Indices: 60031201--60031282 Score: 96
Period size: 40 Copynumber: 2.0 Consensus size: 40
60031191 ATGAAGATGT
* * *
60031201 TTAAAAATATTTATTTATTATTTTATATTTTTAATTTTTA
1 TTAAAAATACTTATTTATTATTTTAGATTTTTAAATTTTA
*
60031241 TTAAAAATACTT-TTTATTTTTATTAGA-TTTTAGAATTTTA
1 TTAAAAATACTTATTTATTATT-TTAGATTTTTA-AATTTTA
60031281 TT
1 TT
60031283 TTTAATTATC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
39 13 0.36
40 23 0.64
ACGTcount: A:0.34, C:0.01, G:0.02, T:0.62
Consensus pattern (40 bp):
TTAAAAATACTTATTTATTATTTTAGATTTTTAAATTTTA
Found at i:60033076 original size:106 final size:106
Alignment explanation
Indices: 60032944--60033252 Score: 512
Period size: 106 Copynumber: 2.9 Consensus size: 106
60032934 TTAATAAACC
* *** * *
60032944 GTAATTTATACATATTTTTA-CACCATGTTTAACACATTTTATGGATGATTTCCCATTAGAATTG
1 GTAAATTATACATATTTTTATC-CCATGTTTAGTGCATTTAATGGATGATTTCTCATTAGAATTG
60033008 GTGAATTCGATGCTCCTACTGCTTTAATTTCATTGATAAATA
65 GTGAATTCGATGCTCCTACTGCTTTAATTTCATTGATAAATA
60033050 GTAAATTATACATATTTTTATCCCATGTTTAGTGCATTTAATGGATGATTTCTCATTAGAATTGG
1 GTAAATTATACATATTTTTATCCCATGTTTAGTGCATTTAATGGATGATTTCTCATTAGAATTGG
60033115 TGAATTCGATGCTCCTACTGCTTTAATTTCATTGATAAATA
66 TGAATTCGATGCTCCTACTGCTTTAATTTCATTGATAAATA
** *
60033156 GTTCATTATACATATTCTTATCCCATGTTTAGTGCATTTAATGGATGATTTCTCATTAGAATTGG
1 GTAAATTATACATATTTTTATCCCATGTTTAGTGCATTTAATGGATGATTTCTCATTAGAATTGG
*
60033221 TGAATTCGATGCTCCTAATGCTTTAATTTCAT
66 TGAATTCGATGCTCCTACTGCTTTAATTTCAT
60033253 GTTTTATACT
Statistics
Matches: 192, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
106 191 0.99
107 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.43
Consensus pattern (106 bp):
GTAAATTATACATATTTTTATCCCATGTTTAGTGCATTTAATGGATGATTTCTCATTAGAATTGG
TGAATTCGATGCTCCTACTGCTTTAATTTCATTGATAAATA
Found at i:60055577 original size:24 final size:24
Alignment explanation
Indices: 60055527--60055580 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
60055517 AATCGAATTT
*
60055527 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
60055551 GCACACATAGTGCCATAG-CACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
60055575 GCACAC
1 GCACAC
60055581 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 6 0.22
26 2 0.07
ACGTcount: A:0.30, C:0.39, G:0.17, T:0.15
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:60061760 original size:47 final size:47
Alignment explanation
Indices: 60061701--60061793 Score: 152
Period size: 47 Copynumber: 2.0 Consensus size: 47
60061691 AAGAGGAAGA
*
60061701 GGCCAAAGTGAAAACCTGCAAAGGGCGCTTTGAGAC-CTAATAAAAAG
1 GGCCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACTC-AATAAAAAG
*
60061748 GGCCAAAGTGAAAACCCGCAAAGGGCGTTTTGAGACTCAATAAAAA
1 GGCCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACTCAATAAAAA
60061794 TGAAAAAAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
47 42 0.98
48 1 0.02
ACGTcount: A:0.41, C:0.19, G:0.25, T:0.15
Consensus pattern (47 bp):
GGCCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACTCAATAAAAAG
Found at i:60063066 original size:43 final size:45
Alignment explanation
Indices: 60063011--60063106 Score: 124
Period size: 43 Copynumber: 2.2 Consensus size: 45
60063001 AGCCACCAGC
* * **
60063011 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAATG-AG-T
1 CTTATCTCTCTGAGATAGCAAGAAAGCAGACTGAAGAATGAAGAT
* *
60063054 CTTATCTTTCTGAGATAGCAAGAAAGCAGACTGAAGATTGAAGAT
1 CTTATCTCTCTGAGATAGCAAGAAAGCAGACTGAAGAATGAAGAT
60063099 CTTATCTC
1 CTTATCTC
60063107 CCTAAGCAGT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 34 0.77
44 2 0.05
45 8 0.18
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (45 bp):
CTTATCTCTCTGAGATAGCAAGAAAGCAGACTGAAGAATGAAGAT
Found at i:60063327 original size:176 final size:174
Alignment explanation
Indices: 60062964--60063375 Score: 495
Period size: 176 Copynumber: 2.3 Consensus size: 174
60062954 AAAGATGATG
* * *
60062964 AATCTTATCTCCATGTGTCGGCAATGAAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAG
1 AATCTTATCTCCATGTATTGGCAATGGAGC--ATTTAAGCCACCAGCCTTATCTCTCTGAGGTAG
*
60063029 CAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTTCTGAGATAGCAAGAAAGCAGACTGAAGATTG
64 CAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGATAGCAAGAAAGCAGACTGAAGATTG
* ** **
60063094 AAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTG
129 AAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCAAAGACAGCA
* ** *
60063140 AATCTTATCTCCATGTATTGTCAATGGAGCATTTTTGCCACTAGCCTTATCTCTCTGAGGTAGCA
1 AATCTTATCTCCATGTATTGGCAATGGAGCATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCA
* * * * *
60063205 AGAGGGCAGGTTGAAGTAATTG-GTCTTATCTTCCTGAGGTAGCAAGGAAGTAGATTGAAGATTG
66 AGAGAGCAGGTTGAAG-AA-TGAGTCTTATCTTCCTGAGATAGCAAGAAAGCAGACTGAAGATTG
* * * * *
60063269 AGGATCTTGTTTCCCTTAAGCAGTTGTGGAACA-AGTCGAAGACAGCA
129 AAGATCTTATCTCCC-TAAGCAGTAGTGGAACAGA-TCAAAGACAGCA
* * * *
60063316 AATCTTATCTCCATGTATTGGCAATGGAGCAGATTTAAGTCATCAGCCTTGTCTCCCTGA
1 AATCTTATCTCCATGTATTGGCAATGGAGC--ATTTAAGCCACCAGCCTTATCTCTCTGA
60063376 AGTTGTAGTG
Statistics
Matches: 199, Mismatches: 31, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
174 47 0.24
175 52 0.26
176 79 0.40
178 21 0.11
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (174 bp):
AATCTTATCTCCATGTATTGGCAATGGAGCATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCA
AGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGATAGCAAGAAAGCAGACTGAAGATTGAA
GATCTTATCTCCCTAAGCAGTAGTGGAACAGATCAAAGACAGCA
Found at i:60064972 original size:72 final size:72
Alignment explanation
Indices: 60064882--60065024 Score: 277
Period size: 72 Copynumber: 2.0 Consensus size: 72
60064872 CTAATTTTAA
60064882 CCTCAGTGACCAATTTTATTTATCAATTATCTCTTCTATTTTAATTCAATTTTAATTAAGTTTTG
1 CCTCAGTGACCAATTTTATTTATCAATTATCTCTTCTATTTTAATTCAATTTTAATTAAGTTTTG
60064947 TATTTGC
66 TATTTGC
*
60064954 CCTCAGTGACCAATTTTATTTATCAATTATCTCTTCTATTTTAATTCAATTTTAATTAAGTTTTT
1 CCTCAGTGACCAATTTTATTTATCAATTATCTCTTCTATTTTAATTCAATTTTAATTAAGTTTTG
60065019 TATTTG
66 TATTTG
60065025 TATGACTTAT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 70 1.00
ACGTcount: A:0.27, C:0.15, G:0.06, T:0.52
Consensus pattern (72 bp):
CCTCAGTGACCAATTTTATTTATCAATTATCTCTTCTATTTTAATTCAATTTTAATTAAGTTTTG
TATTTGC
Found at i:60070494 original size:27 final size:27
Alignment explanation
Indices: 60069602--60070481 Score: 1706
Period size: 27 Copynumber: 32.6 Consensus size: 27
60069592 TAAATTGTGC
*
60069602 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60069629 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60069656 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60069683 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60069710 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60069737 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60069764 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60069791 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60069818 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60069845 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60069872 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60069899 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60069926 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60069953 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60069980 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60070007 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60070034 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60070061 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60070088 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60070115 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60070142 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60070169 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60070196 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60070223 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60070250 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60070277 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60070304 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60070331 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60070358 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
60070385 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
60070412 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
60070440 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
60070467 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60070482 GACTTAATAT
Statistics
Matches: 848, Mismatches: 4, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
27 822 0.97
28 26 0.03
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:60072126 original size:15 final size:15
Alignment explanation
Indices: 60072106--60072136 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
60072096 ATAGTTGGGC
*
60072106 TATTGGGCTTTAGGT
1 TATTGGGCATTAGGT
60072121 TATTGGGCATTAGGT
1 TATTGGGCATTAGGT
60072136 T
1 T
60072137 TAGCAGATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.06, G:0.32, T:0.45
Consensus pattern (15 bp):
TATTGGGCATTAGGT
Found at i:60078665 original size:16 final size:16
Alignment explanation
Indices: 60078644--60078680 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
60078634 CTCTAGCGAT
60078644 GCCCCTAAATATCTCA
1 GCCCCTAAATATCTCA
60078660 GCCCCTAAATATCTCA
1 GCCCCTAAATATCTCA
60078676 GCCCC
1 GCCCC
60078681 ATTCGACCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.27, C:0.43, G:0.08, T:0.22
Consensus pattern (16 bp):
GCCCCTAAATATCTCA
Found at i:60081824 original size:13 final size:13
Alignment explanation
Indices: 60081793--60081831 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
60081783 ACATAAAAAA
60081793 AATATTAAA--AT
1 AATATTAAATCAT
*
60081804 ATTATTAAATCAT
1 AATATTAAATCAT
60081817 AATATTAAATCAT
1 AATATTAAATCAT
60081830 AA
1 AA
60081832 ACGATAGTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 8 0.33
13 16 0.67
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (13 bp):
AATATTAAATCAT
Found at i:60082620 original size:4 final size:4
Alignment explanation
Indices: 60082611--60082635 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
60082601 GTTCATAGTT
60082611 CATA CATA CATA CATA CATA CATA C
1 CATA CATA CATA CATA CATA CATA C
60082636 GTGTGTGTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (4 bp):
CATA
Found at i:60085078 original size:19 final size:20
Alignment explanation
Indices: 60085041--60085091 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 20
60085031 TTAAAAAAAT
*
60085041 AAATTATAAAAAGTTATTTTTA
1 AAATTAT-AAAAGTTA-TTTAA
60085063 AAATT-TAAAA-TTATTTAA
1 AAATTATAAAAGTTATTTAA
60085081 AAATTATAAAA
1 AAATTATAAAA
60085092 ATGATAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 9 0.33
19 8 0.30
20 4 0.15
21 1 0.04
22 5 0.19
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (20 bp):
AAATTATAAAAGTTATTTAA
Found at i:60085102 original size:42 final size:42
Alignment explanation
Indices: 60085014--60085113 Score: 107
Period size: 42 Copynumber: 2.4 Consensus size: 42
60085004 TTTAATTAAT
*
60085014 TTTTTAAAATTTTAAAATTAAAAAAATAAATTATAAAAAGTTA
1 TTTTTAAAA-TTTAAAATTAAAAAAATAAATTATAAAAAGTAA
***
60085057 TTTTTAAAATTTAAAATT-ATTTAA-AAATTATAAAAATGATAA
1 TTTTTAAAATTTAAAATTAAAAAAATAAATTATAAAAA-G-TAA
*
60085099 TTTTT-AATTTTAAAA
1 TTTTTAAAATTTAAAA
60085114 AAATAAAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
40 12 0.24
41 13 0.26
42 16 0.32
43 9 0.18
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (42 bp):
TTTTTAAAATTTAAAATTAAAAAAATAAATTATAAAAAGTAA
Found at i:60086052 original size:15 final size:15
Alignment explanation
Indices: 60086032--60086061 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
60086022 AATAAGCCAT
60086032 ATTATGTATATAAAC
1 ATTATGTATATAAAC
60086047 ATTATGTATATAAAC
1 ATTATGTATATAAAC
60086062 CTACAATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.40
Consensus pattern (15 bp):
ATTATGTATATAAAC
Found at i:60088111 original size:21 final size:21
Alignment explanation
Indices: 60088082--60088124 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
60088072 AAAACACGCG
60088082 AACAAAAGCTCATAAGAGCTA
1 AACAAAAGCTCATAAGAGCTA
* * *
60088103 AACAGAAGCTCGTGAGAGCTA
1 AACAAAAGCTCATAAGAGCTA
60088124 A
1 A
60088125 TCCACCCAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.47, C:0.19, G:0.21, T:0.14
Consensus pattern (21 bp):
AACAAAAGCTCATAAGAGCTA
Found at i:60090247 original size:14 final size:14
Alignment explanation
Indices: 60090228--60090258 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
60090218 TTGTGTGTTC
60090228 TTTATTTTATTTTA
1 TTTATTTTATTTTA
*
60090242 TTTATTTTCTTTTA
1 TTTATTTTATTTTA
60090256 TTT
1 TTT
60090259 TTCATAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:60094690 original size:5 final size:5
Alignment explanation
Indices: 60094680--60094712 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
60094670 TTGTGTGTTC
60094680 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
60094713 TCACAAACCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:60096439 original size:4 final size:4
Alignment explanation
Indices: 60096430--60096461 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
60096420 GTTCATAGTT
60096430 CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA
60096462 GAGAGAGAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:60099167 original size:95 final size:95
Alignment explanation
Indices: 60099001--60099191 Score: 364
Period size: 95 Copynumber: 2.0 Consensus size: 95
60098991 ATGTGATTGG
60099001 GTACTGGTCCGTATGTCCTACTGGTGGCTAAGTTATCCGGCATGTGCTGCGGATTCTCGTCAGCT
1 GTACTGGTCCGTATGTCCTACTGGTGGCTAAGTTATCCGGCATGTGCTGCGGATTCTCGTCAGCT
60099066 TATGTGAGCAACACCGTGTAGCTTCGTCAT
66 TATGTGAGCAACACCGTGTAGCTTCGTCAT
*
60099096 GTACTGGTCCGTATGTCCTACTGGTGGCTGAGTTATCCGGCATGTGCTGCGGATTCTCGTCAGCT
1 GTACTGGTCCGTATGTCCTACTGGTGGCTAAGTTATCCGGCATGTGCTGCGGATTCTCGTCAGCT
*
60099161 TGTGTGAGCAACACCGTGTAGCTTCGTCAT
66 TATGTGAGCAACACCGTGTAGCTTCGTCAT
60099191 G
1 G
60099192 AGTGTCAGCT
Statistics
Matches: 94, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
95 94 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (95 bp):
GTACTGGTCCGTATGTCCTACTGGTGGCTAAGTTATCCGGCATGTGCTGCGGATTCTCGTCAGCT
TATGTGAGCAACACCGTGTAGCTTCGTCAT
Found at i:60099878 original size:2 final size:2
Alignment explanation
Indices: 60099873--60099911 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
60099863 TGCATATATA
60099873 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
60099912 AAATGCCCTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:60103148 original size:21 final size:21
Alignment explanation
Indices: 60103122--60103170 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
60103112 CATGGTGTTG
60103122 AAGAAGCCACGTGGGAACCCA
1 AAGAAGCCACGTGGGAACCCA
* **
60103143 AAGAAGCCATGTGGGAACCTG
1 AAGAAGCCACGTGGGAACCCA
60103164 AAGAAGC
1 AAGAAGC
60103171 TATGAGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.39, C:0.22, G:0.31, T:0.08
Consensus pattern (21 bp):
AAGAAGCCACGTGGGAACCCA
Found at i:60105219 original size:19 final size:18
Alignment explanation
Indices: 60105063--60105250 Score: 85
Period size: 18 Copynumber: 10.1 Consensus size: 18
60105053 TCATTAACTC
*
60105063 TCAG-AACAATTATTTAT
1 TCAGTAACAATTAGTTAT
* *
60105080 TCAGTAACAGTCAGTTAT
1 TCAGTAACAATTAGTTAT
* * **
60105098 TCGGTAACAATCAAATAT
1 TCAGTAACAATTAGTTAT
* * **
60105116 TCAATAATAACCAGTTAT
1 TCAGTAACAATTAGTTAT
60105134 TCAGTATCGATCAATTGATCGGTTAT
1 TCAGTA---A-CAATT-A---GTTAT
* * * *
60105160 CCAGTAACAGTCAATTAT
1 TCAGTAACAATTAGTTAT
*
60105178 TCAGTAA-AATTAGATAT
1 TCAGTAACAATTAGTTAT
60105195 TCAGTAACAATTAAGTTAT
1 TCAGTAACAATT-AGTTAT
* * *
60105214 TTAGTAACAGTCA-TTCAT
1 TCAGTAACAATTAGTT-AT
*
60105232 TCAGTGACAATTAGTTAT
1 TCAGTAACAATTAGTTAT
60105250 T
1 T
60105251 TTATACCTTT
Statistics
Matches: 124, Mismatches: 34, Indels: 25
0.68 0.19 0.14
Matches are distributed among these distances:
17 19 0.15
18 70 0.56
19 16 0.13
21 2 0.02
22 5 0.04
23 2 0.02
26 10 0.08
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (18 bp):
TCAGTAACAATTAGTTAT
Found at i:60105499 original size:45 final size:44
Alignment explanation
Indices: 60105434--60105526 Score: 177
Period size: 45 Copynumber: 2.1 Consensus size: 44
60105424 GTAATAGTAT
60105434 AGTAACAATATCGACACACAAAGTGCCGAATCGGTAACGGTAAC
1 AGTAACAATATCGACACACAAAGTGCCGAATCGGTAACGGTAAC
60105478 AGTAACAATATTCGACACACAAAGTGCCGAATCGGTAACGGTAAC
1 AGTAACAATA-TCGACACACAAAGTGCCGAATCGGTAACGGTAAC
60105523 AGTA
1 AGTA
60105527 GCGGTAACAG
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 10 0.21
45 38 0.79
ACGTcount: A:0.41, C:0.22, G:0.20, T:0.17
Consensus pattern (44 bp):
AGTAACAATATCGACACACAAAGTGCCGAATCGGTAACGGTAAC
Found at i:60107098 original size:5 final size:5
Alignment explanation
Indices: 60107085--60107146 Score: 115
Period size: 5 Copynumber: 12.2 Consensus size: 5
60107075 TTCTTTAGTT
60107085 TATATA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATA-A TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
60107136 TATAA TATAA T
1 TATAA TATAA T
60107147 TAAAACATAA
Statistics
Matches: 56, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 52 0.93
6 4 0.07
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:60107182 original size:8 final size:8
Alignment explanation
Indices: 60107169--60107197 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
60107159 TATCTTTATT
60107169 ATATAATA
1 ATATAATA
60107177 ATATAATA
1 ATATAATA
60107185 ATATAATA
1 ATATAATA
60107193 ATATA
1 ATATA
60107198 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:60107500 original size:60 final size:60
Alignment explanation
Indices: 60107428--60107547 Score: 213
Period size: 60 Copynumber: 2.0 Consensus size: 60
60107418 TATATATTTA
* *
60107428 CGAATCCATTTTTTAGAAATGGAGACCCAAAAATACACTTTTTCGGTAACGGTAAAATTC
1 CGAATCCATTTTTCAGAAACGGAGACCCAAAAATACACTTTTTCGGTAACGGTAAAATTC
*
60107488 CGAATTCATTTTTCAGAAACGGAGACCCAAAAATACACTTTTTCGGTAACGGTAAAATTC
1 CGAATCCATTTTTCAGAAACGGAGACCCAAAAATACACTTTTTCGGTAACGGTAAAATTC
60107548 AGGTCATTAC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (60 bp):
CGAATCCATTTTTCAGAAACGGAGACCCAAAAATACACTTTTTCGGTAACGGTAAAATTC
Found at i:60107530 original size:30 final size:30
Alignment explanation
Indices: 60107436--60107531 Score: 72
Period size: 30 Copynumber: 3.2 Consensus size: 30
60107426 TACGAATCCA
* *
60107436 TTTTTTAGAAATGGAGACCCAAAAATACAC
1 TTTTTCAGAAACGGAGACCCAAAAATACAC
* * * * * *
60107466 TTTTTCGGTAACGGTAAAATTCC--GAATTCA-
1 TTTTTCAGAAACGG--AGA-CCCAAAAATACAC
60107496 TTTTTCAGAAACGGAGACCCAAAAATACAC
1 TTTTTCAGAAACGGAGACCCAAAAATACAC
60107526 TTTTTC
1 TTTTTC
60107532 GGTAACGGTA
Statistics
Matches: 46, Mismatches: 14, Indels: 12
0.64 0.19 0.17
Matches are distributed among these distances:
27 2 0.04
28 2 0.04
29 5 0.11
30 28 0.61
31 5 0.11
32 2 0.04
33 2 0.04
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (30 bp):
TTTTTCAGAAACGGAGACCCAAAAATACAC
Found at i:60107539 original size:30 final size:30
Alignment explanation
Indices: 60107448--60107539 Score: 82
Period size: 30 Copynumber: 3.1 Consensus size: 30
60107438 TTTTAGAAAT
60107448 GGAGACCCAAAAATACACTTTTTCGGTAAC
1 GGAGACCCAAAAATACACTTTTTCGGTAAC
* * * * * *
60107478 GGTAAAATTCC--GAATTCA-TTTTTCAGAAAC
1 GG--AGA-CCCAAAAATACACTTTTTCGGTAAC
60107508 GGAGACCCAAAAATACACTTTTTCGGTAAC
1 GGAGACCCAAAAATACACTTTTTCGGTAAC
60107538 GG
1 GG
60107540 TAAAATTCAG
Statistics
Matches: 44, Mismatches: 12, Indels: 12
0.65 0.18 0.18
Matches are distributed among these distances:
27 2 0.05
28 2 0.05
29 5 0.11
30 26 0.59
31 5 0.11
32 2 0.05
33 2 0.05
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (30 bp):
GGAGACCCAAAAATACACTTTTTCGGTAAC
Found at i:60111473 original size:19 final size:18
Alignment explanation
Indices: 60111317--60111504 Score: 94
Period size: 18 Copynumber: 10.1 Consensus size: 18
60111307 TCATTAACTC
*
60111317 TCAG-AACAATTATTTAT
1 TCAGTAACAATTAGTTAT
* *
60111334 TCAGTAACAGTCAGTTAT
1 TCAGTAACAATTAGTTAT
* **
60111352 TCAGTAACAATCAAATAT
1 TCAGTAACAATTAGTTAT
* * **
60111370 TCAATAATAACCAGTTAT
1 TCAGTAACAATTAGTTAT
60111388 TCAGTATCGATCAATTGATCGGTTAT
1 TCAGTA---A-CAATT-A---GTTAT
* * * *
60111414 CCAGTAACAGTCAATTAT
1 TCAGTAACAATTAGTTAT
*
60111432 TCAGTAA-AATTAGATAT
1 TCAGTAACAATTAGTTAT
60111449 TCAGTAACAATTAAGTTAT
1 TCAGTAACAATT-AGTTAT
* * *
60111468 TTAGTAACAGTCA-TTCAT
1 TCAGTAACAATTAGTT-AT
*
60111486 TCAGTGACAATTAGTTAT
1 TCAGTAACAATTAGTTAT
60111504 T
1 T
60111505 TTATACCTTT
Statistics
Matches: 126, Mismatches: 32, Indels: 25
0.69 0.17 0.14
Matches are distributed among these distances:
17 19 0.15
18 72 0.57
19 16 0.13
21 2 0.02
22 5 0.04
23 2 0.02
26 10 0.08
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (18 bp):
TCAGTAACAATTAGTTAT
Found at i:60111747 original size:42 final size:44
Alignment explanation
Indices: 60111688--60111778 Score: 141
Period size: 42 Copynumber: 2.1 Consensus size: 44
60111678 GTAACAGTAT
60111688 AGTAACAATATCCGACACACAAAGTGCCGAATC-G-ACGGTAAC
1 AGTAACAATATCCGACACACAAAGTGCCGAATCGGAACGGTAAC
* *
60111730 AGTAATAATATTCGACACACAAAGTGCCGAATCGGTAACGGTAAC
1 AGTAACAATATCCGACACACAAAGTGCCGAATCGG-AACGGTAAC
60111775 AGTA
1 AGTA
60111779 GCTGTAATAG
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
42 31 0.70
43 1 0.02
45 12 0.27
ACGTcount: A:0.41, C:0.22, G:0.20, T:0.18
Consensus pattern (44 bp):
AGTAACAATATCCGACACACAAAGTGCCGAATCGGAACGGTAAC
Found at i:60113336 original size:5 final size:5
Alignment explanation
Indices: 60113328--60113373 Score: 92
Period size: 5 Copynumber: 9.2 Consensus size: 5
60113318 TTTAGTTTAT
60113328 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA A
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA A
60113374 AACATAAAGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 41 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:60113406 original size:8 final size:8
Alignment explanation
Indices: 60113393--60113429 Score: 74
Period size: 8 Copynumber: 4.6 Consensus size: 8
60113383 TATCTTTATT
60113393 ATATAATA
1 ATATAATA
60113401 ATATAATA
1 ATATAATA
60113409 ATATAATA
1 ATATAATA
60113417 ATATAATA
1 ATATAATA
60113425 ATATA
1 ATATA
60113430 CTAAACATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:60119058 original size:22 final size:22
Alignment explanation
Indices: 60119019--60119063 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
60119009 TTTTAACATA
* *
60119019 TTAATAATTTTATACATAGATT
1 TTAATAAATTGATACATAGATT
* *
60119041 TTAATAAATTGATTCATATATT
1 TTAATAAATTGATACATAGATT
60119063 T
1 T
60119064 CATATTAAAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.51
Consensus pattern (22 bp):
TTAATAAATTGATACATAGATT
Found at i:60132825 original size:42 final size:42
Alignment explanation
Indices: 60132763--60132842 Score: 151
Period size: 42 Copynumber: 1.9 Consensus size: 42
60132753 TAAAATCAAC
60132763 CCAACCCCATGCAATACAACATACAATACATGACATGCTAAA
1 CCAACCCCATGCAATACAACATACAATACATGACATGCTAAA
*
60132805 CCAACCCCATGCAATGCAACATACAATACATGACATGC
1 CCAACCCCATGCAATACAACATACAATACATGACATGC
60132843 CATCTCATGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.42, C:0.33, G:0.09, T:0.16
Consensus pattern (42 bp):
CCAACCCCATGCAATACAACATACAATACATGACATGCTAAA
Found at i:60132842 original size:21 final size:21
Alignment explanation
Indices: 60132779--60132842 Score: 53
Period size: 21 Copynumber: 3.0 Consensus size: 21
60132769 CCATGCAATA
60132779 CAACATACAATACATGACATG
1 CAACATACAATACATGACATG
* **
60132800 CTAA-A-CCAACCCCATG-CAATG
1 C-AACATACAA-TACATGAC-ATG
60132821 CAACATACAATACATGACATG
1 CAACATACAATACATGACATG
60132842 C
1 C
60132843 CATCTCATGA
Statistics
Matches: 31, Mismatches: 6, Indels: 12
0.63 0.12 0.24
Matches are distributed among these distances:
20 6 0.19
21 19 0.61
22 6 0.19
ACGTcount: A:0.44, C:0.30, G:0.09, T:0.17
Consensus pattern (21 bp):
CAACATACAATACATGACATG
Found at i:60141589 original size:22 final size:22
Alignment explanation
Indices: 60141550--60141594 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
60141540 TTTTAACATA
* *
60141550 TTAATAATTTTATACATAGATT
1 TTAATAAATTGATACATAGATT
* *
60141572 TTAATAAATTGATTCATATATT
1 TTAATAAATTGATACATAGATT
60141594 T
1 T
60141595 CATATTAAAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.51
Consensus pattern (22 bp):
TTAATAAATTGATACATAGATT
Found at i:60142636 original size:14 final size:14
Alignment explanation
Indices: 60142619--60142646 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
60142609 TAGCTAAAAT
60142619 AACATTAGATGTAC
1 AACATTAGATGTAC
60142633 AACATTAGATGTAC
1 AACATTAGATGTAC
60142647 CATCGAATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (14 bp):
AACATTAGATGTAC
Found at i:60152628 original size:54 final size:54
Alignment explanation
Indices: 60152570--60152785 Score: 163
Period size: 54 Copynumber: 4.0 Consensus size: 54
60152560 TTTACCCTAT
** * *
60152570 AGGGGTATGTCGGTCATTTTAC-ACTACAAGGGTATTTTAATAATTTTACAAATC
1 AGGGGTATGTCAATAATTTTACAAAT-CAAGGGTATTTTAATAATTTTACAAATC
* * * *
60152624 AGGGGTGTTTCAATAATTTTACAAATTAAGGGTATTTTAGTAATTTTACAAATC
1 AGGGGTATGTCAATAATTTTACAAATCAAGGGTATTTTAATAATTTTACAAATC
* * * * * *
60152678 -GATGGTATTTCAGTAATTTTACAAATCGAGGTTATTTCAATAA--TTACACAATC
1 AG-GGGTATGTCAATAATTTTACAAATCAAGGGTATTTTAATAATTTTACA-AATC
* ** ** ***
60152731 -GAGGGTATTTTGATAATTTTACAAATCGGGGGTATTTCGGTAATTTTACAAATC
1 AG-GGGTATGTCAATAATTTTACAAATCAAGGGTATTTTAATAATTTTACAAATC
60152785 A
1 A
60152786 AGGATGTTTC
Statistics
Matches: 132, Mismatches: 24, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
52 5 0.04
53 40 0.30
54 80 0.61
55 7 0.05
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (54 bp):
AGGGGTATGTCAATAATTTTACAAATCAAGGGTATTTTAATAATTTTACAAATC
Found at i:60152795 original size:27 final size:27
Alignment explanation
Indices: 60152596--60152803 Score: 197
Period size: 27 Copynumber: 7.7 Consensus size: 27
60152586 TTTTACACTA
* *
60152596 CAAGGGTATTTTAATAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTACAAAT
* * *
60152623 CAGGGGTGTTTCAATAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTACAAAT
* *
60152650 TAAGGGTATTTTAGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTACAAAT
* *
60152677 CGATGGTATTTCAGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTACAAAT
* * *
60152704 CGAGGTTATTTCAATAA--TTACACAAT
1 CAAGGGTATTTCAGTAATTTTACA-AAT
* *
60152730 CGAGGGTATTT-TGATAATTTTACAAAT
1 CAAGGGTATTTCAG-TAATTTTACAAAT
** *
60152757 CGGGGGTATTTCGGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTACAAAT
* * *
60152784 CAAGGATGTTTCGGTAATTT
1 CAAGGGTATTTCAGTAATTT
60152804 CTCTTTATTA
Statistics
Matches: 152, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
25 5 0.03
26 16 0.11
27 125 0.82
28 6 0.04
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTACAAAT
Found at i:60152802 original size:80 final size:79
Alignment explanation
Indices: 60152598--60152795 Score: 245
Period size: 80 Copynumber: 2.5 Consensus size: 79
60152588 TTACACTACA
* * * * *
60152598 AGGGTATTTTAATAATTTTACAAATCAGGGGTGTTTCAATAATTTTACAAATTAAGGGTATTTTA
1 AGGGTATTTCAGTAATTTTACAAATCAAGGATGTTTCAATAA--TTACAAATCAAGGGTATTTTA
60152663 GTAATTTTACAAATCG
64 GTAATTTTACAAATCG
* * * * *
60152679 ATGGTATTTCAGTAATTTTACAAATCGAGGTTATTTCAATAATTACACAATCGAGGGTATTTT-G
1 AGGGTATTTCAGTAATTTTACAAATCAAGGATGTTTCAATAATTACA-AATCAAGGGTATTTTAG
60152743 ATAATTTTACAAATCG
65 -TAATTTTACAAATCG
* *
60152759 GGGGTATTTCGGTAATTTTACAAATCAAGGATGTTTC
1 AGGGTATTTCAGTAATTTTACAAATCAAGGATGTTTC
60152796 GGTAATTTCT
Statistics
Matches: 100, Mismatches: 15, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
79 6 0.06
80 59 0.59
81 35 0.35
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (79 bp):
AGGGTATTTCAGTAATTTTACAAATCAAGGATGTTTCAATAATTACAAATCAAGGGTATTTTAGT
AATTTTACAAATCG
Found at i:60155669 original size:48 final size:48
Alignment explanation
Indices: 60155609--60155703 Score: 154
Period size: 48 Copynumber: 2.0 Consensus size: 48
60155599 AGGTTTATCA
* * * *
60155609 TTTTTTTTATTTAAGCAATGAAAATGATACTTAAGTTTTTGGTCATCC
1 TTTTTTTGATTTAAGAAATGAAAAGGATACTCAAGTTTTTGGTCATCC
60155657 TTTTTTTGATTTAAGAAATGAAAAGGATACTCAAGTTTTTGGTCATC
1 TTTTTTTGATTTAAGAAATGAAAAGGATACTCAAGTTTTTGGTCATC
60155704 GATTCAATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.45
Consensus pattern (48 bp):
TTTTTTTGATTTAAGAAATGAAAAGGATACTCAAGTTTTTGGTCATCC
Found at i:60157677 original size:17 final size:18
Alignment explanation
Indices: 60157644--60157679 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
60157634 CATGTGTGCA
60157644 AATAATAAACATATATTT
1 AATAATAAACATATATTT
*
60157662 AATAATAAA-TTATATTT
1 AATAATAAACATATATTT
60157679 A
1 A
60157680 CTTATTCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (18 bp):
AATAATAAACATATATTT
Found at i:60157774 original size:19 final size:21
Alignment explanation
Indices: 60157729--60157777 Score: 66
Period size: 19 Copynumber: 2.4 Consensus size: 21
60157719 ATATTATATA
*
60157729 AAACATAAAGAATAAATAAAGG
1 AAACA-AAAGAATAAAGAAAGG
60157751 AAACAAAAGAA-AAAGAAA-G
1 AAACAAAAGAATAAAGAAAGG
60157770 AAACAAAA
1 AAACAAAA
60157778 ATGGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 9 0.35
20 6 0.23
21 6 0.23
22 5 0.19
ACGTcount: A:0.76, C:0.06, G:0.12, T:0.06
Consensus pattern (21 bp):
AAACAAAAGAATAAAGAAAGG
Found at i:60163721 original size:18 final size:18
Alignment explanation
Indices: 60163700--60163786 Score: 129
Period size: 18 Copynumber: 4.8 Consensus size: 18
60163690 CGTTTACGAT
*
60163700 ACTATTCATGTATACGGC
1 ACTATTCACGTATACGGC
*
60163718 ACTATTCACGTATACGGT
1 ACTATTCACGTATACGGC
*
60163736 ACTGTTCACGTATACGGC
1 ACTATTCACGTATACGGC
*
60163754 ACTATTCACGTATACGGT
1 ACTATTCACGTATACGGC
*
60163772 ACTGTTCACGTATAC
1 ACTATTCACGTATAC
60163787 AGTAGTTGGG
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 62 1.00
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.32
Consensus pattern (18 bp):
ACTATTCACGTATACGGC
Found at i:60163756 original size:36 final size:36
Alignment explanation
Indices: 60163694--60163786 Score: 159
Period size: 36 Copynumber: 2.6 Consensus size: 36
60163684 TACGACCGTT
* * *
60163694 TACGATACTATTCATGTATACGGCACTATTCACGTA
1 TACGGTACTGTTCACGTATACGGCACTATTCACGTA
60163730 TACGGTACTGTTCACGTATACGGCACTATTCACGTA
1 TACGGTACTGTTCACGTATACGGCACTATTCACGTA
60163766 TACGGTACTGTTCACGTATAC
1 TACGGTACTGTTCACGTATAC
60163787 AGTAGTTGGG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 54 1.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (36 bp):
TACGGTACTGTTCACGTATACGGCACTATTCACGTA
Found at i:60170891 original size:3 final size:3
Alignment explanation
Indices: 60170883--60170922 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
60170873 CAACTATACT
*
60170883 ATA ATA ATA ACA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
60170923 GAGTAAACTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:60181156 original size:248 final size:248
Alignment explanation
Indices: 60180718--60181210 Score: 776
Period size: 248 Copynumber: 2.0 Consensus size: 248
60180708 TCTTCTCATG
*
60180718 GTAAGCATTTCATTGACATGGATTGCAGCATATGAACTTTGTTTGATTCAGTATTCACTCGTAGT
1 GTAAGCATTTCATTGACATGGATTGCAGCATATGAACTTTGTTTGATTCAGTATTCACTCGTAGC
* * * *
60180783 ATGCGATATCATTTTCCTAATTTTAAACCTGTCTTTAGTAGATGTTTTTGCCTACTTGATTCATA
66 ATGCGATATCATCTTCCTAATTCTAAACCAGTCTTTAGTAGATGTTTCTGCCTACTTGATTCATA
* *
60180848 GATACATAAAATCTTGTTCTTGGTTCTTCCTTGAGTATTTTGTCCCGGAAAGAATTTTAGATAGC
131 AATACATAAAATCTTGTTCTTGGTTCTTCATTGAGTATTTTGTCCCGGAAAGAATTTTAGATAGC
*
60180913 CAATGGAAATTTTCTGGGAAATAAGGTGTGAGGCAAAAAAGTATCATGGAGCT
196 CAATGGAAATTTTCTGGGAAATAAGGTGTGAGACAAAAAAGTATCATGGAGCT
** *
60180966 GTAAGCATTTCATTGACATGGATTGCAGCATATGAACTTTGTTTGATTTGGTATTCAAC-CGTGG
1 GTAAGCATTTCATTGACATGGATTGCAGCATATGAACTTTGTTTGATTCAGTATTC-ACTCGTAG
60181030 CATGCGATATCATCTTCCTAATTCTAAA-CAGCTCTTTAGTAGATGTTTCTGCCTACTTGATTCA
65 CATGCGATATCATCTTCCTAATTCTAAACCAG-TCTTTAGTAGATGTTTCTGCCTACTTGATTCA
* * *
60181094 TAAATACATAAAATCTTGTT-TGTGGTTCTTCATTGTGTGTTTTGTCCCGGTAAGAATTTTAGAT
129 TAAATACATAAAATCTTGTTCT-TGGTTCTTCATTGAGTATTTTGTCCCGGAAAGAATTTTAGAT
* * * *
60181158 AGCCGATGGAAGTTTTTTGGGAAATAAGGTGTGAGACGAAAAAGTATCATGGA
193 AGCCAATGGAAATTTTCTGGGAAATAAGGTGTGAGACAAAAAAGTATCATGGA
60181211 AGCCCTAGGA
Statistics
Matches: 224, Mismatches: 18, Indels: 6
0.90 0.07 0.02
Matches are distributed among these distances:
247 3 0.01
248 219 0.98
249 2 0.01
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38
Consensus pattern (248 bp):
GTAAGCATTTCATTGACATGGATTGCAGCATATGAACTTTGTTTGATTCAGTATTCACTCGTAGC
ATGCGATATCATCTTCCTAATTCTAAACCAGTCTTTAGTAGATGTTTCTGCCTACTTGATTCATA
AATACATAAAATCTTGTTCTTGGTTCTTCATTGAGTATTTTGTCCCGGAAAGAATTTTAGATAGC
CAATGGAAATTTTCTGGGAAATAAGGTGTGAGACAAAAAAGTATCATGGAGCT
Found at i:60189452 original size:22 final size:22
Alignment explanation
Indices: 60189398--60189455 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 22
60189388 ATTAAGTTTC
* *
60189398 TCCTCTTTTCTTTCTTTTCTGAT
1 TCCTCTCTT-TTTCTTCTCTGAT
60189421 TCTCTCTCTTTTTCTTCTCTTG-T
1 TC-CTCTCTTTTTCTTCTC-TGAT
60189444 TCCTCTCTTTTT
1 TCCTCTCTTTTT
60189456 TGGTTTTATG
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
22 10 0.32
23 13 0.42
24 8 0.26
ACGTcount: A:0.02, C:0.29, G:0.03, T:0.66
Consensus pattern (22 bp):
TCCTCTCTTTTTCTTCTCTGAT
Found at i:60195298 original size:45 final size:46
Alignment explanation
Indices: 60195231--60195354 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
60195221 CATATGACCT
*
60195231 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCT-AGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
60195274 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
60195320 CTTATCACTTTATCACTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
60195355 CACTTATCAC
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 8 0.11
44 4 0.05
45 21 0.28
46 41 0.55
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (46 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
Found at i:60195358 original size:37 final size:37
Alignment explanation
Indices: 60195317--60195486 Score: 201
Period size: 37 Copynumber: 4.8 Consensus size: 37
60195307 GCTGAAGCTA
*
60195317 CCACTTATCACTTTATCACTTGATCAGATAAGTGTAG
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
* *
60195354 CCACTTATCACTTTGT--C-TG-T-AGCTGAAG-CTA-
1 CCACTTATCACTTTGTCACTTGATCAGAT-AAGTGTAG
* *
60195385 CCACTTATCACTTTATCACTTGATCAGATAAGTGTAA
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
**
60195422 CCACTTATCACTTTGTTTCTTGATCAGATAAGTGTAG
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
**
60195459 CCACTTATCACTTTGTTTCTTGATCAGA
1 CCACTTATCACTTTGTCACTTGATCAGA
60195487 AGTACTCAAA
Statistics
Matches: 115, Mismatches: 10, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
31 15 0.13
32 5 0.04
33 5 0.04
34 4 0.03
35 5 0.04
36 5 0.04
37 76 0.66
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.38
Consensus pattern (37 bp):
CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
Found at i:60195394 original size:68 final size:68
Alignment explanation
Indices: 60195303--60195437 Score: 261
Period size: 68 Copynumber: 2.0 Consensus size: 68
60195293 ATCAGATAAG
*
60195303 TGTAGCTGAAGCTACCACTTATCACTTTATCACTTGATCAGATAAGTGTAGCCACTTATCACTTT
1 TGTAGCTGAAGCTACCACTTATCACTTTATCACTTGATCAGATAAGTGTAACCACTTATCACTTT
60195368 GTC
66 GTC
60195371 TGTAGCTGAAGCTACCACTTATCACTTTATCACTTGATCAGATAAGTGTAACCACTTATCACTTT
1 TGTAGCTGAAGCTACCACTTATCACTTTATCACTTGATCAGATAAGTGTAACCACTTATCACTTT
60195436 GT
66 GT
60195438 TTCTTGATCA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 66 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (68 bp):
TGTAGCTGAAGCTACCACTTATCACTTTATCACTTGATCAGATAAGTGTAACCACTTATCACTTT
GTC
Found at i:60204506 original size:17 final size:19
Alignment explanation
Indices: 60204462--60204500 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
60204452 TGAATTAAGG
60204462 AAGGTTAGAGTTTTCTCCA
1 AAGGTTAGAGTTTTCTCCA
60204481 AAGGTTAGAGTTTTCTCCA
1 AAGGTTAGAGTTTTCTCCA
60204500 A
1 A
60204501 GTTAGACTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (19 bp):
AAGGTTAGAGTTTTCTCCA
Found at i:60206436 original size:40 final size:40
Alignment explanation
Indices: 60206378--60206544 Score: 253
Period size: 40 Copynumber: 4.2 Consensus size: 40
60206368 AAGTGCTTTT
* *
60206378 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTATCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* **
60206418 TGAATGCACATACATGCCCATGTTTGTACTTTAGTACCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* *
60206458 TGAATGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
*
60206498 TGAATGCACATACATGCCGCTGTTTGTACTTCGGTACCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
60206538 TTGAATG
1 -TGAATG
60206545 TATTATAATG
Statistics
Matches: 113, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
40 107 0.95
41 6 0.05
ACGTcount: A:0.21, C:0.29, G:0.19, T:0.32
Consensus pattern (40 bp):
TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
Found at i:60211480 original size:69 final size:69
Alignment explanation
Indices: 60211400--60211540 Score: 264
Period size: 69 Copynumber: 2.0 Consensus size: 69
60211390 CAGTATCGTA
60211400 TTAACATCATACTTCAAGCAAAAGAACTTTCTCAGGTCAAATTAATGTGTTTGAGAATATATATA
1 TTAACATCATACTTCAAGCAAAAGAACTTTCTCAGGTCAAATTAATGTGTTTGAGAATATATATA
60211465 CATC
66 CATC
* *
60211469 TTAACATCATACTTCAAGCAAAAGAACTTTCTCAGGTCAAATTAATTTGTTTGAGCATATATATA
1 TTAACATCATACTTCAAGCAAAAGAACTTTCTCAGGTCAAATTAATGTGTTTGAGAATATATATA
60211534 CATC
66 CATC
60211538 TTA
1 TTA
60211541 TAGGAAACAA
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (69 bp):
TTAACATCATACTTCAAGCAAAAGAACTTTCTCAGGTCAAATTAATGTGTTTGAGAATATATATA
CATC
Found at i:60218728 original size:64 final size:64
Alignment explanation
Indices: 60218627--60218755 Score: 258
Period size: 64 Copynumber: 2.0 Consensus size: 64
60218617 CAATCTGATC
60218627 ATGGACACATTCATTTCAACCACTAGCTATTCAAATGGAGAGTGGATTCTTGTAGTCAATAAGG
1 ATGGACACATTCATTTCAACCACTAGCTATTCAAATGGAGAGTGGATTCTTGTAGTCAATAAGG
60218691 ATGGACACATTCATTTCAACCACTAGCTATTCAAATGGAGAGTGGATTCTTGTAGTCAATAAGG
1 ATGGACACATTCATTTCAACCACTAGCTATTCAAATGGAGAGTGGATTCTTGTAGTCAATAAGG
60218755 A
1 A
60218756 AGACACTCAG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.29
Consensus pattern (64 bp):
ATGGACACATTCATTTCAACCACTAGCTATTCAAATGGAGAGTGGATTCTTGTAGTCAATAAGG
Found at i:60219187 original size:33 final size:33
Alignment explanation
Indices: 60219150--60219217 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
60219140 GAATGCTAAA
60219150 ATGCCACCAGGGATTACACAATCAATTCAAGAG
1 ATGCCACCAGGGATTACACAATCAATTCAAGAG
60219183 ATGCCACCAGGGATTACACAATCAATTCAAGAG
1 ATGCCACCAGGGATTACACAATCAATTCAAGAG
60219216 AT
1 AT
60219218 TCTGGATTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.40, C:0.24, G:0.18, T:0.19
Consensus pattern (33 bp):
ATGCCACCAGGGATTACACAATCAATTCAAGAG
Found at i:60221716 original size:3 final size:3
Alignment explanation
Indices: 60221708--60221751 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
60221698 TGAAGTTGAT
60221708 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G-A GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
60221752 AATGGCCGAG
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 38 0.95
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:60232689 original size:111 final size:111
Alignment explanation
Indices: 60232495--60232716 Score: 435
Period size: 111 Copynumber: 2.0 Consensus size: 111
60232485 TTATTATCTA
60232495 GCCTAAAAATTAAGGGATTTGTTTATCTAAACTAATTAACTAAACTGAGGGTACACAGAGAGAAA
1 GCCTAAAAATTAAGGGATTTGTTTATCTAAACTAATTAACTAAACTGAGGGTACACAGAGAGAAA
*
60232560 ATTGGGAAAAGCTTTTTGGGAAAACTCGATTGATTAAGACAATACT
66 ATTGGGAAAAGCTTTTTGGGAAAACTCAATTGATTAAGACAATACT
60232606 GCCTAAAAATTAAGGGATTTGTTTATCTAAACTAATTAACTAAACTGAGGGTACACAGAGAGAAA
1 GCCTAAAAATTAAGGGATTTGTTTATCTAAACTAATTAACTAAACTGAGGGTACACAGAGAGAAA
60232671 ATTGGGAAAAGCTTTTTGGGAAAACTCAATTGATTAAGACAATACT
66 ATTGGGAAAAGCTTTTTGGGAAAACTCAATTGATTAAGACAATACT
60232717 CAAGGAAAAA
Statistics
Matches: 110, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
111 110 1.00
ACGTcount: A:0.41, C:0.12, G:0.19, T:0.28
Consensus pattern (111 bp):
GCCTAAAAATTAAGGGATTTGTTTATCTAAACTAATTAACTAAACTGAGGGTACACAGAGAGAAA
ATTGGGAAAAGCTTTTTGGGAAAACTCAATTGATTAAGACAATACT
Found at i:60233474 original size:13 final size:13
Alignment explanation
Indices: 60233456--60233481 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
60233446 TCGACAGGGA
60233456 CACGCCCGTGTGC
1 CACGCCCGTGTGC
60233469 CACGCCCGTGTGC
1 CACGCCCGTGTGC
60233482 GATTGCTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.46, G:0.31, T:0.15
Consensus pattern (13 bp):
CACGCCCGTGTGC
Found at i:60235403 original size:15 final size:15
Alignment explanation
Indices: 60235383--60235412 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
60235373 AGTTACTACT
60235383 CAAATTTTGAAATCA
1 CAAATTTTGAAATCA
60235398 CAAATTTTGAAATCA
1 CAAATTTTGAAATCA
60235413 TTCGTAACGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.07, T:0.33
Consensus pattern (15 bp):
CAAATTTTGAAATCA
Found at i:60237054 original size:30 final size:31
Alignment explanation
Indices: 60237020--60237084 Score: 114
Period size: 30 Copynumber: 2.1 Consensus size: 31
60237010 CAATCGAGAC
*
60237020 TTAACCCTTTTTCACCATTTTCTAGCATGT-
1 TTAACCCTTTTTCACCATTTTCTAACATGTA
60237050 TTAACCCTTTTTCACCATTTTCTAACATGTA
1 TTAACCCTTTTTCACCATTTTCTAACATGTA
60237081 TTAA
1 TTAA
60237085 TTTCTCATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 29 0.88
31 4 0.12
ACGTcount: A:0.25, C:0.25, G:0.05, T:0.46
Consensus pattern (31 bp):
TTAACCCTTTTTCACCATTTTCTAACATGTA
Found at i:60239938 original size:25 final size:24
Alignment explanation
Indices: 60239901--60239953 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
60239891 GCACACAGCC
* * *
60239901 GTGTTCCAGCCCGTGTGCCAGGCT
1 GTGTTACAGCCCGTATGCCAGGAT
60239925 GTGTTACACGCCCGTATGCCAGGAT
1 GTGTTACA-GCCCGTATGCCAGGAT
60239950 GTGT
1 GTGT
60239954 AACTCTCGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 7 0.28
25 18 0.72
ACGTcount: A:0.13, C:0.28, G:0.32, T:0.26
Consensus pattern (24 bp):
GTGTTACAGCCCGTATGCCAGGAT
Found at i:60240884 original size:41 final size:41
Alignment explanation
Indices: 60240822--60240949 Score: 175
Period size: 41 Copynumber: 3.1 Consensus size: 41
60240812 CACAAAAGTG
* *
60240822 ATTCACGGGTACCAAACTACAAACAGGGGCACGTATGTGCA
1 ATTCACGGGTACCGAAGTACAAACAGGGGCACGTATGTGCA
* * **
60240863 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGCATGTGTG
1 ATTCACGGGTACCGAAGTACAAACAGGGGCACGTATGTGCA
* * *
60240904 ATTTATGGGTACCGAAGTACAAACAGGGGCACGTATATGCA
1 ATTCACGGGTACCGAAGTACAAACAGGGGCACGTATGTGCA
60240945 ATTCA
1 ATTCA
60240950 TACAATAATT
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 74 1.00
ACGTcount: A:0.33, C:0.20, G:0.27, T:0.20
Consensus pattern (41 bp):
ATTCACGGGTACCGAAGTACAAACAGGGGCACGTATGTGCA
Found at i:60247470 original size:25 final size:26
Alignment explanation
Indices: 60247438--60247492 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
60247428 TTATTAAATT
*
60247438 ATATATTTTAATTATAA-TATATTTA
1 ATATATTTTAATAATAATTATATTTA
*
60247463 ATATA-TTTAATAATAATTATGTTTA
1 ATATATTTTAATAATAATTATATTTA
60247488 A-ATAT
1 ATATAT
60247493 GATTAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATATTTTAATAATAATTATATTTA
Found at i:60247726 original size:16 final size:16
Alignment explanation
Indices: 60247705--60247740 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
60247695 GATTAGTTAT
60247705 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
60247721 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
60247737 TACA
1 TACA
60247741 NNNNNNNNNN
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:60255199 original size:89 final size:89
Alignment explanation
Indices: 60255048--60255224 Score: 311
Period size: 89 Copynumber: 2.0 Consensus size: 89
60255038 CCGAATGTCA
* *
60255048 ATTCACCCGGGGAGTACGAAAATGTACAACGATCTGAGACGTCAGTTTTGGTGGCATGGTATGAA
1 ATTCACCCGGGGAGTACGAAAATGTACAACAATCTGAAACGTCAGTTTTGGTGGCATGGTATGAA
60255113 ACGAGACATCTCCGACTTTGTTTC
66 ACGAGACATCTCCGACTTTGTTTC
*
60255137 ATTCACCCGGGGAGTACGAAAATGTACAACAATTTGAAACGTC-GATTTTGGTGGCATGGTATGA
1 ATTCACCCGGGGAGTACGAAAATGTACAACAATCTGAAACGTCAG-TTTTGGTGGCATGGTATGA
60255201 AACGAGACATCTCCGACTTTGTTT
65 AACGAGACATCTCCGACTTTGTTT
60255225 TGAGATGTTT
Statistics
Matches: 84, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
88 1 0.01
89 83 0.99
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (89 bp):
ATTCACCCGGGGAGTACGAAAATGTACAACAATCTGAAACGTCAGTTTTGGTGGCATGGTATGAA
ACGAGACATCTCCGACTTTGTTTC
Found at i:60256367 original size:63 final size:63
Alignment explanation
Indices: 60256263--60256389 Score: 227
Period size: 63 Copynumber: 2.0 Consensus size: 63
60256253 ACCAATGATA
* *
60256263 AGCTAAATTCCTCAACAATGATATAGTACATTTCAAGCATTCCTCAAGTGTACAAGACAATTC
1 AGCTAAATTCCTCAACAATGATATAGCACACTTCAAGCATTCCTCAAGTGTACAAGACAATTC
*
60256326 AGCTGAATTCCTCAACAATGATATAGCACACTTCAAGCATTCCTCAAGTGTACAAGACAATTC
1 AGCTAAATTCCTCAACAATGATATAGCACACTTCAAGCATTCCTCAAGTGTACAAGACAATTC
60256389 A
1 A
60256390 TCAAATACTC
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.27
Consensus pattern (63 bp):
AGCTAAATTCCTCAACAATGATATAGCACACTTCAAGCATTCCTCAAGTGTACAAGACAATTC
Found at i:60257044 original size:99 final size:99
Alignment explanation
Indices: 60256873--60257072 Score: 364
Period size: 99 Copynumber: 2.0 Consensus size: 99
60256863 CCGAGAACCG
60256873 ACTAAACCTGCTCTGATACCACCAAAGTTAACTCCCCCACGCCCGAAACCCTCGCCGGAGTCGAG
1 ACTAAACCTGCTCTGATACCACCAAAGTTAACTCCCCCACGCCCGAAACCCTCGCCGGAGTCGAG
*
60256938 CACGAGGAATTACTAAAATTATTTGAGCACTTAA
66 CAAGAGGAATTACTAAAATTATTTGAGCACTTAA
* *
60256972 ACTAAACCTGCTCTGATACCACCAAATTTAACTCCCCCACGCCCGAAACCGTCGCCGGAGTCGAG
1 ACTAAACCTGCTCTGATACCACCAAAGTTAACTCCCCCACGCCCGAAACCCTCGCCGGAGTCGAG
*
60257037 CAAGAGGAATTACTAAACTTATTTGAGCACTTAA
66 CAAGAGGAATTACTAAAATTATTTGAGCACTTAA
60257071 AC
1 AC
60257073 AAATTCAGAC
Statistics
Matches: 97, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
99 97 1.00
ACGTcount: A:0.33, C:0.31, G:0.16, T:0.20
Consensus pattern (99 bp):
ACTAAACCTGCTCTGATACCACCAAAGTTAACTCCCCCACGCCCGAAACCCTCGCCGGAGTCGAG
CAAGAGGAATTACTAAAATTATTTGAGCACTTAA
Found at i:60257141 original size:59 final size:59
Alignment explanation
Indices: 60257074--60257191 Score: 218
Period size: 59 Copynumber: 2.0 Consensus size: 59
60257064 CACTTAAACA
* *
60257074 AATTCAGACAAGCTGTCCAACTGCGTCACAGTTACTTAAAAATTCATATCTCGAGTTCT
1 AATTCAGACAAGCTGTCCAACTACGTCACAGTTACTTAAAAACTCATATCTCGAGTTCT
60257133 AATTCAGACAAGCTGTCCAACTACGTCACAGTTACTTAAAAACTCATATCTCGAGTTCT
1 AATTCAGACAAGCTGTCCAACTACGTCACAGTTACTTAAAAACTCATATCTCGAGTTCT
60257192 GAAACTTGAA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.30
Consensus pattern (59 bp):
AATTCAGACAAGCTGTCCAACTACGTCACAGTTACTTAAAAACTCATATCTCGAGTTCT
Found at i:60259395 original size:21 final size:21
Alignment explanation
Indices: 60259345--60259396 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
60259335 TAGGGAACAA
* **
60259345 ATGCCCATGTGGTCCAGGGAC
1 ATGCCCGTGTGGTCCAAAGAC
60259366 ATGCCCGTGTGGTCCAAAGAC
1 ATGCCCGTGTGGTCCAAAGAC
*
60259387 ATGCTCGTGT
1 ATGCCCGTGT
60259397 TGCAGGCCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (21 bp):
ATGCCCGTGTGGTCCAAAGAC
Found at i:60261085 original size:38 final size:37
Alignment explanation
Indices: 60261012--60261090 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 37
60261002 TATTACGAAA
* *
60261012 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCTCCACACGAAGTCATCGGG
*
60261049 TCTTACCCGGACAAAAAT-TCCCACACGTAGTCATCGGG
1 TCTTACCCGGAC-AAAATCT-CCACACGAAGTCATCGGG
60261087 TCTT
1 TCTT
60261091 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 13 0.35
38 24 0.65
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCTCCACACGAAGTCATCGGG
Found at i:60261161 original size:58 final size:58
Alignment explanation
Indices: 60261071--60261181 Score: 186
Period size: 58 Copynumber: 1.9 Consensus size: 58
60261061 AAAAATTCCC
* * *
60261071 ACACGTAGTCATCGGGTCTTTAGAGCTCGGATATAGTACAAGCACGAAGCTTAAGGCT
1 ACACGTAGTCATCAGGTCCTTAGAACTCGGATATAGTACAAGCACGAAGCTTAAGGCT
*
60261129 ACACGTAGTCATCAGGTCCTTAGAACTCGGATATAGTACGAGCACGAAGCTTA
1 ACACGTAGTCATCAGGTCCTTAGAACTCGGATATAGTACAAGCACGAAGCTTA
60261182 GGGACATTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
58 49 1.00
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.23
Consensus pattern (58 bp):
ACACGTAGTCATCAGGTCCTTAGAACTCGGATATAGTACAAGCACGAAGCTTAAGGCT
Found at i:60261345 original size:47 final size:47
Alignment explanation
Indices: 60261282--60262109 Score: 1566
Period size: 47 Copynumber: 17.6 Consensus size: 47
60261272 CACATTTATG
* * * ** * * **
60261282 CACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
60261329 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
60261376 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
60261423 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
60261470 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
60261517 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
60261564 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
60261611 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
60261658 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
60261705 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
60261752 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
60261799 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
60261846 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
60261893 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
60261940 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
60261987 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
60262034 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
*
60262081 CACTTTCACATTCATCACATCGGCTATTA
1 CACTTTCACATTCATCACATCGGCCATTA
60262110 GGTGTGATAT
Statistics
Matches: 771, Mismatches: 10, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 771 1.00
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.30
Consensus pattern (47 bp):
CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
Found at i:60261521 original size:141 final size:141
Alignment explanation
Indices: 60261282--60262634 Score: 1734
Period size: 141 Copynumber: 9.1 Consensus size: 141
60261272 CACATTTATG
* * * ** * * **
60261282 CACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCAC
60261347 ATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
66 ATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
60261412 TCACGCATATA
131 TCACGCATATA
60261423 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCAC
60261488 ATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
66 ATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
60261553 TCACGCATATA
131 TCACGCATATA
60261564 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCAC
60261629 ATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
66 ATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
60261694 TCACGCATATA
131 TCACGCATATA
60261705 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCAC
60261770 ATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
66 ATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
60261835 TCACGCATATA
131 TCACGCATATA
60261846 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCAC
60261911 ATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
66 ATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
60261976 TCACGCATATA
131 TCACGCATATA
60261987 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCAC
* * **
60262052 ATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATCGGCTATTAGGTGTGA
66 ATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCT--
60262117 TATCACATCGGCTATTAGGCCTTATCACACATATA
129 TAT--CA-C-GC----A-----TAT---------A
* * **
60262152 CACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCAC
* * **
60262217 ATCGGCTATTAGGTGTGATATCACATCGGCTATTAGGCCTTATCACACAATACACTTTCACATTC
66 ATCGGCCATTAAGCCT--TAT--CA-C-GC----A-----TAT--------ACACTTTCACATTC
* **
60262282 ATCACATCGGCCATTAGGCCTTATCACATATATA
108 ATCACATCGGCCATTAAGCCTTATCACGCATATA
* * **
60262316 CACTTTCACATTCATCACATCGGCTATTAGGTGTGATATCACATCGGCTATTAGGCCTTATCACA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCT--TAT--CA-C-GC----A-----TAT----
* * **
60262381 CATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
47 -----ACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATT
*
60262446 CATCACATCGGCCATTAGGCCTTATCACGCATATA
107 CATCACATCGGCCATTAAGCCTTATCACGCATATA
60262481 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCAC
60262546 ATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
66 ATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
**
60262611 TCACATATATATA
131 TCAC--GCATATA
60262624 CACTTTCACAT
1 CACTTTCACAT
60262635 ATGGGTTTAA
Statistics
Matches: 1088, Mismatches: 51, Indels: 144
0.85 0.04 0.11
Matches are distributed among these distances:
141 762 0.70
143 19 0.02
145 2 0.00
146 1 0.00
147 2 0.00
150 3 0.00
151 1 0.00
155 1 0.00
156 3 0.00
159 2 0.00
160 1 0.00
161 2 0.00
163 3 0.00
164 31 0.03
165 150 0.14
166 3 0.00
167 3 0.00
168 2 0.00
169 3 0.00
170 1 0.00
171 2 0.00
173 6 0.01
174 1 0.00
175 1 0.00
178 2 0.00
179 3 0.00
180 3 0.00
183 2 0.00
184 4 0.00
186 6 0.01
188 63 0.06
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (141 bp):
CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCAC
ATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
TCACGCATATA
Found at i:60262139 original size:71 final size:71
Alignment explanation
Indices: 60262047--60262182 Score: 227
Period size: 71 Copynumber: 1.9 Consensus size: 71
60262037 TTTCACATTC
* *
60262047 ATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATCGGCTATTAGG
1 ATCACATCGGCCATTAAGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGG
60262112 TGTGAT
66 TGTGAT
* * *
60262118 ATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTTATCACATCGGCCATTAGG
1 ATCACATCGGCCATTAAGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGG
60262183 CCTTATCACA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
71 60 1.00
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (71 bp):
ATCACATCGGCCATTAAGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGG
TGTGAT
Found at i:60262148 original size:24 final size:24
Alignment explanation
Indices: 60262094--60262145 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
60262084 TTTCACATTC
**
60262094 ATCACATCGGCTATTAGGTGTGAT
1 ATCACATCGGCTATTAGGCCTGAT
60262118 ATCACATCGGCTATTAGGCCT--T
1 ATCACATCGGCTATTAGGCCTGAT
60262140 ATCACA
1 ATCACA
60262146 CATATACACT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 7 0.27
24 19 0.73
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (24 bp):
ATCACATCGGCTATTAGGCCTGAT
Found at i:60262169 original size:47 final size:47
Alignment explanation
Indices: 60262117--60262229 Score: 199
Period size: 47 Copynumber: 2.4 Consensus size: 47
60262107 TTAGGTGTGA
60262117 TATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATT
1 TATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATT
* *
60262164 TATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
1 TATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATT
*
60262211 CATCACATCGGCTATTAGG
1 TATCACATCGGCTATTAGG
60262230 TGTGATATCA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 62 1.00
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33
Consensus pattern (47 bp):
TATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATT
Found at i:60262208 original size:118 final size:118
Alignment explanation
Indices: 60262000--60262464 Score: 842
Period size: 118 Copynumber: 3.9 Consensus size: 118
60261990 TTTCACATTC
* * * *
60262000 ATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAG
1 ATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGG
**
60262065 CCTTATCACGCATATACACTTTCACATTCATCACATCGGCTATTAGGTGTGAT
66 CCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGTGTGAT
*
60262118 ATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTTATCACATCGGCCATTAGG
1 ATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGG
60262183 CCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGTGTGAT
66 CCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGTGTGAT
60262236 ATCACATCGGCTATTAGGCCTTATCACACA-ATACACTTTCACATTCATCACATCGGCCATTAGG
1 ATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGG
60262300 CCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGTGTGAT
66 CCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGTGTGAT
*
60262353 ATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTTATCACATCGGCCATTAGG
1 ATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGG
*
60262418 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
66 CCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGG
60262465 CCTTATCACG
Statistics
Matches: 336, Mismatches: 10, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
117 116 0.35
118 220 0.65
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.32
Consensus pattern (118 bp):
ATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGG
CCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGTGTGAT
Found at i:60262265 original size:24 final size:24
Alignment explanation
Indices: 60262212--60262263 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
60262202 TTTCACATTC
**
60262212 ATCACATCGGCTATTAGGTGTGAT
1 ATCACATCGGCTATTAGGCCTGAT
60262236 ATCACATCGGCTATTAGGCCT--T
1 ATCACATCGGCTATTAGGCCTGAT
60262258 ATCACA
1 ATCACA
60262264 CAATACACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 7 0.27
24 19 0.73
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (24 bp):
ATCACATCGGCTATTAGGCCTGAT
Found at i:60262284 original size:70 final size:71
Alignment explanation
Indices: 60262164--60262299 Score: 238
Period size: 70 Copynumber: 1.9 Consensus size: 71
60262154 CTTTCACATT
* *
60262164 TATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAG
1 TATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAG
60262229 GTGTGA
66 GTGTGA
*
60262235 TATCACATCGGCTATTAGGCCTTATCACACA-ATACACTTTCACATTCATCACATCGGCCATTAG
1 TATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAG
60262299 G
66 G
60262300 CCTTATCACA
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
70 33 0.53
71 29 0.47
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (71 bp):
TATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAG
GTGTGA
Found at i:60262335 original size:47 final size:47
Alignment explanation
Indices: 60262236--60262634 Score: 370
Period size: 47 Copynumber: 8.0 Consensus size: 47
60262226 TAGGTGTGAT
*
60262236 ATCACATCGGCTATTAGGCCTTATCACACA-ATACACTTTCACATTC
1 ATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTC
*
60262282 ATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTC
1 ATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTC
* ** *
60262329 ATCACATCGGCTATTAGGTGTGATATCACATCGGCTATTAGGC-CTTATCACACATATAC
1 ATCACATCGGCCATTAGGCCT--TATCACA-C--ATA-TA--CACTT-T--CACAT-T-C
*** ** *
60262388 ACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTC
1 A---TCACA-TCGGC-CAT---TA----GGCCTTATCACACATATACACTTTCACATTC
*
60262447 ATCACATCGGCCATTAGGCCTTATCACGCATATACACTTTCACATTC
1 ATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTC
* *
60262494 ATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTC
1 ATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTC
* *
60262541 ATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTC
1 ATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTC
* *
60262588 ATCACATCGGCCATTAAGCCTTATCACATATATATACACTTTCACAT
1 ATCACATCGGCCATTAGGCCTTATCAC--ACATATACACTTTCACAT
60262635 ATGGGTTTAA
Statistics
Matches: 297, Mismatches: 27, Indels: 55
0.78 0.07 0.15
Matches are distributed among these distances:
46 28 0.09
47 183 0.62
49 23 0.08
52 2 0.01
53 2 0.01
54 6 0.02
55 4 0.01
56 5 0.02
57 5 0.02
58 1 0.00
59 4 0.01
60 1 0.00
61 5 0.02
62 5 0.02
63 4 0.01
64 5 0.02
65 2 0.01
66 2 0.01
69 7 0.02
71 3 0.01
ACGTcount: A:0.30, C:0.29, G:0.10, T:0.31
Consensus pattern (47 bp):
ATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTC
Found at i:60262362 original size:71 final size:71
Alignment explanation
Indices: 60262282--60262417 Score: 236
Period size: 71 Copynumber: 1.9 Consensus size: 71
60262272 TTTCACATTC
* *
60262282 ATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGG
1 ATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGG
60262347 TGTGAT
66 TGTGAT
* *
60262353 ATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTTATCACATCGGCCATTAGG
1 ATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGG
60262418 CCTTATCACA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 61 1.00
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (71 bp):
ATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGG
TGTGAT
Found at i:60262383 original size:24 final size:24
Alignment explanation
Indices: 60262329--60262380 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
60262319 TTTCACATTC
**
60262329 ATCACATCGGCTATTAGGTGTGAT
1 ATCACATCGGCTATTAGGCCTGAT
60262353 ATCACATCGGCTATTAGGCCT--T
1 ATCACATCGGCTATTAGGCCTGAT
60262375 ATCACA
1 ATCACA
60262381 CATATACACT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 7 0.27
24 19 0.73
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (24 bp):
ATCACATCGGCTATTAGGCCTGAT
Found at i:60262463 original size:94 final size:94
Alignment explanation
Indices: 60262353--60262634 Score: 483
Period size: 94 Copynumber: 3.0 Consensus size: 94
60262343 TAGGTGTGAT
* * * *
60262353 ATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTTATCACATCGGCCATTAGG
1 ATCACATCGGCCATTAGGCCTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAG
60262418 CCTTATCACATATATACACTTTCACATTC
66 CCTTATCACATATATACACTTTCACATTC
60262447 ATCACATCGGCCATTAGGCCTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAG
1 ATCACATCGGCCATTAGGCCTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAG
**
60262512 CCTTATCACGCATATACACTTTCACATTC
66 CCTTATCACATATATACACTTTCACATTC
*
60262541 ATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAG
1 ATCACATCGGCCATTAGGCCTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAG
60262606 CCTTATCACATATATATACACTTTCACAT
66 CCTTATCAC--ATATATACACTTTCACAT
60262635 ATGGGTTTAA
Statistics
Matches: 177, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
94 161 0.91
96 16 0.09
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (94 bp):
ATCACATCGGCCATTAGGCCTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAG
CCTTATCACATATATACACTTTCACATTC
Found at i:60289999 original size:42 final size:42
Alignment explanation
Indices: 60289953--60290077 Score: 187
Period size: 43 Copynumber: 2.9 Consensus size: 42
60289943 ATGTGTGGCG
** *
60289953 TCCGAGCTTGTTGAGTGGTCCAGTTCATTATGGATGCGAGCA
1 TCCGAGCTCATTGAGTGGTCGAGTTCATTATGGATGCGAGCA
60289995 TCCGAGCTCATTGAGTGGTCTGAGTTCATTATGGATGCGAGCA
1 TCCGAGCTCATTGAGTGGTC-GAGTTCATTATGGATGCGAGCA
* *
60290038 TCCAAGCTCATTGAGTGGTTCGAGTTCATAATGGATGCGA
1 TCCGAGCTCATTGAGTGG-TCGAGTTCATTATGGATGCGA
60290078 TACATGTGAT
Statistics
Matches: 76, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
42 18 0.24
43 56 0.74
44 2 0.03
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (42 bp):
TCCGAGCTCATTGAGTGGTCGAGTTCATTATGGATGCGAGCA
Found at i:60294441 original size:40 final size:40
Alignment explanation
Indices: 60294397--60294565 Score: 261
Period size: 40 Copynumber: 4.2 Consensus size: 40
60294387 GCTCCTCATT
* *
60294397 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
60294437 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
60294477 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
60294517 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
60294556 CAAATGCCTT
1 CAAATGCCTT
60294566 TGGATCTTAG
Statistics
Matches: 121, Mismatches: 7, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
39 31 0.26
40 88 0.73
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:60294581 original size:119 final size:120
Alignment explanation
Indices: 60294399--60294614 Score: 280
Period size: 119 Copynumber: 1.8 Consensus size: 120
60294389 TCCTCATTCA
*
60294399 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
60294464 -TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATGA-TAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * * **
60294519 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTT-TGGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
*
60294581 ATATGATCACTTAGCACAAAGCCTTCGGGACTTA
64 ATATGATAACTTAGCACAAAGCCTTCGGGACTTA
60294615 GCTCGGACAT
Statistics
Matches: 83, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
118 4 0.05
119 57 0.69
120 22 0.27
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATGATAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:60294605 original size:79 final size:79
Alignment explanation
Indices: 60294397--60294621 Score: 233
Period size: 80 Copynumber: 2.8 Consensus size: 79
60294387 GCTCCTCATT
* * * * *
60294397 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAACCCGGATT-GAGTAACTAGCACAAA-GCCTTCGGGACTTAGCCCG
*
60294461 GATTTAGTAACTCGCA
64 GAATTAGTAACTCGCA
* * *
60294477 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTGAGTAACTAGCA-CAAAGCCTTCGGGACTTAGCCCGG
*
60294541 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
* ** * *
60294556 CAAATGCCTT-TGGATCTTAGTCCGGATATGA-TCACTTAGCACAAAGCCTTCGGGACTTAGCTC
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TGAGTAAC-TAGCACAAAGCCTTCGGGACTTAGCCC
60294619 GGA
63 GGA
60294622 CATCATTCAA
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.02
79 57 0.46
80 60 0.48
81 5 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATTGAGTAACTAGCACAAAGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:60297184 original size:24 final size:24
Alignment explanation
Indices: 60297119--60297189 Score: 83
Period size: 23 Copynumber: 3.0 Consensus size: 24
60297109 TTTCCATCAC
* *
60297119 ATGGCTCTTTGTGAGCTTCCTGAT
1 ATGGTTCTTTGTGAGCTTCCTAAT
*
60297143 A-GGCTT-TTCGTGAGCTTCCTAAT
1 ATGG-TTCTTTGTGAGCTTCCTAAT
*
60297166 ATGGTTCTTTGTGAACTTCCTAAT
1 ATGGTTCTTTGTGAGCTTCCTAAT
60297190 TACAGCTCTT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
23 20 0.51
24 19 0.49
ACGTcount: A:0.17, C:0.20, G:0.21, T:0.42
Consensus pattern (24 bp):
ATGGTTCTTTGTGAGCTTCCTAAT
Found at i:60297257 original size:23 final size:24
Alignment explanation
Indices: 60297225--60297284 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
60297215 TATAGCCCTG
*
60297225 ATAAGCTTCCTGAAA-GGCTCTTT
1 ATAAGCTTCCCGAAATGGCTCTTT
*
60297248 ATGAGCTTCCCGAAATGGCTCTTT
1 ATAAGCTTCCCGAAATGGCTCTTT
*
60297272 GTAAGCTTCCCGA
1 ATAAGCTTCCCGA
60297285 TTATGTGCTC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
23 13 0.41
24 19 0.59
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (24 bp):
ATAAGCTTCCCGAAATGGCTCTTT
Found at i:60299902 original size:74 final size:74
Alignment explanation
Indices: 60299781--60299929 Score: 280
Period size: 74 Copynumber: 2.0 Consensus size: 74
60299771 GTTGGATTGA
60299781 CCCAATAAGAATAGACCCTGAATCCATTTATGACTTTATTAAATTCTGACATTCAAATTTTGGCA
1 CCCAATAAGAATAGACCCTGAATCCATTTATGACTTTATTAAATTCTGACATTCAAATTTTGGCA
60299846 TACCTTAAT
66 TACCTTAAT
* *
60299855 CCCAATAAGAATAGAGCCTGAATCCATTTATGGCTTTATTAAATTCTGACATTCAAATTTTGGCA
1 CCCAATAAGAATAGACCCTGAATCCATTTATGACTTTATTAAATTCTGACATTCAAATTTTGGCA
60299920 TACCTTAAT
66 TACCTTAAT
60299929 C
1 C
60299930 TTGAATGGAT
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 73 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.35
Consensus pattern (74 bp):
CCCAATAAGAATAGACCCTGAATCCATTTATGACTTTATTAAATTCTGACATTCAAATTTTGGCA
TACCTTAAT
Found at i:60312917 original size:21 final size:22
Alignment explanation
Indices: 60312879--60312919 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
60312869 CATTAGGGAC
60312879 TTAGGTTATGTCATTTTCTTCT
1 TTAGGTTATGTCATTTTCTTCT
60312901 TTAGGATTA-GTC-TTTTCTT
1 TTAGG-TTATGTCATTTTCTT
60312920 TTTCTTTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.39
22 8 0.44
23 3 0.17
ACGTcount: A:0.15, C:0.12, G:0.15, T:0.59
Consensus pattern (22 bp):
TTAGGTTATGTCATTTTCTTCT
Found at i:60314171 original size:31 final size:30
Alignment explanation
Indices: 60314097--60314174 Score: 93
Period size: 31 Copynumber: 2.6 Consensus size: 30
60314087 CGTTTACAGT
* *
60314097 AAAGGCTTCGGCCCAATGATATGATAATGA
1 AAAGGCTTCGGCCCAGTGACATGATAATGA
** * *
60314127 AAAGAATTTGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGACATG-ATAATGA
60314158 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
60314175 ATATGTTGAG
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
30 18 0.47
31 20 0.53
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTGACATGATAATGA
Found at i:60315994 original size:20 final size:20
Alignment explanation
Indices: 60315969--60316008 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
60315959 TAAAATTAAA
60315969 GTTAGTTTGATTGATGAAGT
1 GTTAGTTTGATTGATGAAGT
60315989 GTTAGTTTGATTGATGAAGT
1 GTTAGTTTGATTGATGAAGT
60316009 ATCCCTTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.45
Consensus pattern (20 bp):
GTTAGTTTGATTGATGAAGT
Found at i:60317758 original size:85 final size:85
Alignment explanation
Indices: 60317615--60317821 Score: 414
Period size: 85 Copynumber: 2.4 Consensus size: 85
60317605 GCTTAGGTTC
60317615 GTTTTTGATAATTTTTACGTTTTTGAGATCGTTGCTTATTGTTCGGCCAACTCCCATGCTCAAAT
1 GTTTTTGATAATTTTTACGTTTTTGAGATCGTTGCTTATTGTTCGGCCAACTCCCATGCTCAAAT
60317680 CCAAGGTTCGTTCTGTGTTG
66 CCAAGGTTCGTTCTGTGTTG
60317700 GTTTTTGATAATTTTTACGTTTTTGAGATCGTTGCTTATTGTTCGGCCAACTCCCATGCTCAAAT
1 GTTTTTGATAATTTTTACGTTTTTGAGATCGTTGCTTATTGTTCGGCCAACTCCCATGCTCAAAT
60317765 CCAAGGTTCGTTCTGTGTTG
66 CCAAGGTTCGTTCTGTGTTG
60317785 GTTTTTGATAATTTTTACGTTTTTGAGATCGTTGCTT
1 GTTTTTGATAATTTTTACGTTTTTGAGATCGTTGCTT
60317822 CAAGTACTTC
Statistics
Matches: 122, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 122 1.00
ACGTcount: A:0.17, C:0.17, G:0.20, T:0.46
Consensus pattern (85 bp):
GTTTTTGATAATTTTTACGTTTTTGAGATCGTTGCTTATTGTTCGGCCAACTCCCATGCTCAAAT
CCAAGGTTCGTTCTGTGTTG
Found at i:60327951 original size:48 final size:48
Alignment explanation
Indices: 60327880--60327975 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
60327870 TCTGAAATAG
60327880 TTCCTCCTGGGGTCCTAAGGGAAACTAGAGGAAAGAGGGACAGATCTC
1 TTCCTCCTGGGGTCCTAAGGGAAACTAGAGGAAAGAGGGACAGATCTC
*
60327928 TTCCTCCTGGGGTCCTAAGGGAAACTAGAGGAAAGAGTGACAGATCTC
1 TTCCTCCTGGGGTCCTAAGGGAAACTAGAGGAAAGAGGGACAGATCTC
60327976 AACGGTAGGA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.29, C:0.21, G:0.30, T:0.20
Consensus pattern (48 bp):
TTCCTCCTGGGGTCCTAAGGGAAACTAGAGGAAAGAGGGACAGATCTC
Found at i:60328767 original size:13 final size:13
Alignment explanation
Indices: 60328749--60328773 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60328739 TATGGGTGCA
60328749 CACGGTCGTGTTG
1 CACGGTCGTGTTG
60328762 CACGGTCGTGTT
1 CACGGTCGTGTT
60328774 CTGCTTTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.24, G:0.36, T:0.32
Consensus pattern (13 bp):
CACGGTCGTGTTG
Found at i:60346264 original size:116 final size:117
Alignment explanation
Indices: 60346054--60346287 Score: 411
Period size: 116 Copynumber: 2.0 Consensus size: 117
60346044 AAGGAAGAAG
*
60346054 AAAGGTTGAAGAGGTTCGGCCATGCATGTGACTAGGCTAAGGTATGTTTAGTGATGTTCCATGAG
1 AAAGGTTGAAGAGATTCGGCCATGCATGTGACTAGGCTAAGGTATGTTTAGTGATGTTCCATGAG
60346119 ATGCATGCATATTTTAGTTGTTAGCTTGAGTTCTACCTAGCCCATGGTCTAA
66 ATGCATGCATATTTTAGTTGTTAGCTTGAGTTCTACCTAGCCCATGGTCTAA
60346171 AAAGG-TGAAGAGATTCGGCCATGCATGT-AGCTAGGCTAAGGTATGTTT-GATGATGTTCCATG
1 AAAGGTTGAAGAGATTCGGCCATGCATGTGA-CTAGGCTAAGGTATGTTTAG-TGATGTTCCATG
*
60346233 AGATGCATGCATGTTTTAGTTGTTAGCTTGAGTTCTACCTAGCCCATGGTCTAA
64 AGATGCATGCATATTTTAGTTGTTAGCTTGAGTTCTACCTAGCCCATGGTCTAA
60346287 A
1 A
60346288 TCTTGCTATG
Statistics
Matches: 113, Mismatches: 2, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
115 2 0.02
116 106 0.94
117 5 0.04
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.33
Consensus pattern (117 bp):
AAAGGTTGAAGAGATTCGGCCATGCATGTGACTAGGCTAAGGTATGTTTAGTGATGTTCCATGAG
ATGCATGCATATTTTAGTTGTTAGCTTGAGTTCTACCTAGCCCATGGTCTAA
Found at i:60347295 original size:39 final size:40
Alignment explanation
Indices: 60347195--60347419 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
60347185 TTGAATGATG
* * * *
60347195 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
60347235 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
60347275 TCCGAGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
60347314 TCCGGGTTAAGTCCCGATGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
60347354 GCCGGGTTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
60347395 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
60347420 AACGAGGAGC
Statistics
Matches: 158, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
39 33 0.21
40 115 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:60347573 original size:76 final size:76
Alignment explanation
Indices: 60347447--60347598 Score: 286
Period size: 76 Copynumber: 2.0 Consensus size: 76
60347437 AGTTAAATTC
*
60347447 CGAAGGTACGTGATTTGGGAATGAATGATCTTGCTGTAAAAATTTCAGTTAATACTCTAGAAACA
1 CGAAGGTACGTGATTTGGGAATGAATGATCTTGCTGTAAAAATTTCAGTTAATACTATAGAAACA
60347512 TCCCAACATTG
66 TCCCAACATTG
*
60347523 CGAAGGTACGTGATTTGGGAATGAATGATCTTGCTGTAAAAATTTCAGTTAATGCTATAGAAACA
1 CGAAGGTACGTGATTTGGGAATGAATGATCTTGCTGTAAAAATTTCAGTTAATACTATAGAAACA
60347588 TCCCAACATTG
66 TCCCAACATTG
60347599 AGGTATGTTT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.30
Consensus pattern (76 bp):
CGAAGGTACGTGATTTGGGAATGAATGATCTTGCTGTAAAAATTTCAGTTAATACTATAGAAACA
TCCCAACATTG
Found at i:60370175 original size:91 final size:91
Alignment explanation
Indices: 60370014--60370197 Score: 325
Period size: 91 Copynumber: 2.0 Consensus size: 91
60370004 ATTCCGTACA
*
60370014 TATGTGACTTTAATGTCTAATGTATAAATATGGGCTAAGTGCCTTGTGTTCCTCTTTTCGATGCT
1 TATGTGACTTTAATGTCTAATGTATAAATATGGGCTAAGTGCCTTGTGTTCATCTTTTCGATGCT
*
60370079 CAAATGATTAAACCAATTTATTTGTT
66 CAAATGATGAAACCAATTTATTTGTT
60370105 TATGTGACTTTAATGTCTAATGTATAAATATGGGCTAAGTGCCTTGTGTTCATCTTTTCGATGC-
1 TATGTGACTTTAATGTCTAATGTATAAATATGGGCTAAGTGCCTTGTGTTCATCTTTTCGATGCT
*
60370169 CTAAATGATGAAATCAATTTATTTGTT
66 C-AAATGATGAAACCAATTTATTTGTT
60370196 TA
1 TA
60370198 ATTAAGCTCA
Statistics
Matches: 89, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
90 1 0.01
91 88 0.99
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.43
Consensus pattern (91 bp):
TATGTGACTTTAATGTCTAATGTATAAATATGGGCTAAGTGCCTTGTGTTCATCTTTTCGATGCT
CAAATGATGAAACCAATTTATTTGTT
Found at i:60370624 original size:79 final size:81
Alignment explanation
Indices: 60370488--60370670 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
60370478 TTGAATGATG
* *
60370488 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
60370552 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
60370567 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
60370629 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
60370647 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
60370671 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:60370686 original size:40 final size:40
Alignment explanation
Indices: 60370489--60370672 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
60370479 TGAATGATGT
* * * *
60370489 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
60370529 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
60370569 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
60370607 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
60370648 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
60370673 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:60370694 original size:79 final size:79
Alignment explanation
Indices: 60370541--60370705 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
60370531 GGACTAAGAT
* **
60370541 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
60370606 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
60370620 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
60370683 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
60370699 CCGAAGG
1 CCGAAGG
60370706 TATGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:60372693 original size:40 final size:40
Alignment explanation
Indices: 60372604--60372867 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
60372594 TTGAATGATG
* *
60372604 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
60372643 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
60372683 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
60372722 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
60372762 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
60372802 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
60372843 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
60372868 AACGAGGAGC
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 53 0.26
40 143 0.69
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:60372885 original size:120 final size:118
Alignment explanation
Indices: 60372604--60372900 Score: 338
Period size: 119 Copynumber: 2.5 Consensus size: 118
60372594 TTGAATGATG
* *
60372604 TCCGGGCTAAGTCCCGAAGGC-TTGTG--CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGCATT-TGAAC-GAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGC
* *
60372664 ATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
61 ATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
* ** * *
60372722 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* *
60372787 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA-AA
* * *
60372843 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
60372901 TACGTGATTT
Statistics
Matches: 153, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
118 23 0.15
119 64 0.42
120 64 0.42
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:60379941 original size:40 final size:39
Alignment explanation
Indices: 60379857--60380041 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 39
60379847 TTGAATGATG
* * *
60379857 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-T-ACTAAA
* *
60379897 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGATACTAAA
* *
60379937 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
* * *
60379976 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTCCTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGATACTA-AA
*
60380017 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
60380042 AACGAGGAGT
Statistics
Matches: 126, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 35 0.28
40 78 0.62
41 12 0.10
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:60379993 original size:79 final size:81
Alignment explanation
Indices: 60379857--60380041 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
60379847 TTGAATGATG
*
60379857 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
60379921 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
60379936 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
* *
60379998 TTTGTGCGAGTTCCTATA
64 TTTGTGCGAGATACTATA
* *
60380016 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
60380042 AACGAGGAGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:60380063 original size:79 final size:79
Alignment explanation
Indices: 60379858--60380074 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
60379848 TGAATGATGT
** * * * **
60379858 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
60379921 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
60379938 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
* *
60380003 GCGAGTTCCT-ATAA
66 GCGAGATACTAAT-A
* * * *
60380017 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGTTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
60380075 TACGTGATTT
Statistics
Matches: 114, Mismatches: 18, Indels: 11
0.80 0.13 0.08
Matches are distributed among these distances:
78 3 0.03
79 70 0.61
80 41 0.36
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:60381352 original size:129 final size:129
Alignment explanation
Indices: 60381122--60381378 Score: 451
Period size: 129 Copynumber: 2.0 Consensus size: 129
60381112 TAAACTGTAC
* *
60381122 TAATTGGCCCTACCAAAAATTCTAGAAAAAAATATGTTGACGGGAATATGAGTCTAGTTTCAGGG
1 TAATTGGCCCAACCAAAAATTCTAGAAAAAAATATGTAGACGGGAATATGAGTCTAGTTTCAGGG
60381187 AAAAATCACGAAACTGATTTTCGAGTTGTGAAACTCAAGATATGATTTTTAAAGCGACTAGTAT
66 AAAAATCACGAAACTGATTTTCGAGTTGTGAAACTCAAGATATGATTTTTAAAGCGACTAGTAT
* * *
60381251 TAATTGGCCCAACCAAAAATTCTAGAAAAAAATATGTAGATGGGCATATGAGTCTAGTTTTAGGG
1 TAATTGGCCCAACCAAAAATTCTAGAAAAAAATATGTAGACGGGAATATGAGTCTAGTTTCAGGG
* *
60381316 AAAAATGACGAAACTGATTTTCGAGTTGTGAAACTCAGGATATGATTTTTAAAGCGACTAGTA
66 AAAAATCACGAAACTGATTTTCGAGTTGTGAAACTCAAGATATGATTTTTAAAGCGACTAGTA
60381379 CGCAGATTGG
Statistics
Matches: 121, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
129 121 1.00
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.29
Consensus pattern (129 bp):
TAATTGGCCCAACCAAAAATTCTAGAAAAAAATATGTAGACGGGAATATGAGTCTAGTTTCAGGG
AAAAATCACGAAACTGATTTTCGAGTTGTGAAACTCAAGATATGATTTTTAAAGCGACTAGTAT
Found at i:60392097 original size:12 final size:13
Alignment explanation
Indices: 60392080--60392109 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
60392070 AAGTTTCTTA
60392080 AAATGGAAAT-AG
1 AAATGGAAATGAG
60392092 AAATGGAAATGAG
1 AAATGGAAATGAG
60392105 AAATG
1 AAATG
60392110 ATATATTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.57, C:0.00, G:0.27, T:0.17
Consensus pattern (13 bp):
AAATGGAAATGAG
Done.