Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 178 of 235
Found at i:60397583 original size:2 final size:2
Alignment explanation
Indices: 60397576--60397606 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
60397566 CTTCGTTAGT
*
60397576 GA GA GA GA GA GA GA GA AA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
60397607 TTACAAGTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
GA
Found at i:60400449 original size:18 final size:18
Alignment explanation
Indices: 60400426--60400461 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
60400416 TTTGCCTGAG
60400426 TTAAACTTGTCTCTGGTT
1 TTAAACTTGTCTCTGGTT
60400444 TTAAACTTGTCTCTGGTT
1 TTAAACTTGTCTCTGGTT
60400462 GGTAGGTCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.50
Consensus pattern (18 bp):
TTAAACTTGTCTCTGGTT
Found at i:60413325 original size:40 final size:39
Alignment explanation
Indices: 60413281--60413444 Score: 97
Period size: 40 Copynumber: 4.1 Consensus size: 39
60413271 AATGTACGAT
* *
60413281 TAGGGGCACCAATGTG-CATTCTGCGGTACTGAAGTACAAA
1 TAGGGGCACCAA-GTGAAATT-AGCGGTACTGAAGTACAAA
* ** *
60413321 TAGGGTCATGTAAGTGAAATTAGGGGTACTGAAGTACAAA
1 TAGGGGCA-CCAAGTGAAATTAGCGGTACTGAAGTACAAA
* *
60413361 TAGGGGCACGTAAGTGCAAA--AGGGGTA-TCGAAGTACAAA
1 TAGGGGCAC-CAAGTG-AAATTAGCGGTACT-GAAGTACAAA
* * * *
60413400 CAGGGGCACATAAGT-ACAATCAAG-GGTACCGAAGTACAAA
1 TAGGGGCAC-CAAGTGA-AAT-TAGCGGTACTGAAGTACAAA
60413440 TAGGG
1 TAGGG
60413445 TCGCATAAGT
Statistics
Matches: 102, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
37 1 0.01
38 3 0.03
39 30 0.29
40 58 0.57
41 10 0.10
ACGTcount: A:0.37, C:0.15, G:0.30, T:0.19
Consensus pattern (39 bp):
TAGGGGCACCAAGTGAAATTAGCGGTACTGAAGTACAAA
Found at i:60413364 original size:20 final size:20
Alignment explanation
Indices: 60413305--60413444 Score: 98
Period size: 20 Copynumber: 7.0 Consensus size: 20
60413295 TGCATTCTGC
60413305 GGTACTGAAGTACAAATA-G
1 GGTACTGAAGTACAAATAGG
*
60413324 GGT-CATGTAAGTGA-AATTAGG
1 GGTAC-TG-AAGT-ACAAATAGG
60413345 GGTACTGAAGTACAAATAGG
1 GGTACTGAAGTACAAATAGG
* *
60413365 GGCAC-GTAAGTGCAAA-AGG
1 GGTACTG-AAGTACAAATAGG
*
60413384 GGTA-TCGAAGTACAAACAGG
1 GGTACT-GAAGTACAAATAGG
* *
60413404 GGCACAT-AAGTAC-AATCAAG
1 GGTAC-TGAAGTACAAAT-AGG
*
60413424 GGTACCGAAGTACAAATAGG
1 GGTACTGAAGTACAAATAGG
60413444 G
1 G
60413445 TCGCATAAGT
Statistics
Matches: 94, Mismatches: 12, Indels: 29
0.70 0.09 0.21
Matches are distributed among these distances:
18 1 0.01
19 23 0.24
20 58 0.62
21 10 0.11
22 2 0.02
ACGTcount: A:0.39, C:0.13, G:0.30, T:0.18
Consensus pattern (20 bp):
GGTACTGAAGTACAAATAGG
Found at i:60413452 original size:40 final size:40
Alignment explanation
Indices: 60413305--60413466 Score: 152
Period size: 40 Copynumber: 4.1 Consensus size: 40
60413295 TGCATTCTGC
* * ** * *
60413305 GGTACTGAAGTACAAATAGGGTCATGTAAGTGA-AATTAGG
1 GGTACCGAAGTACAAATAGGGGCACATAAGT-ACAATCAAG
* * *
60413345 GGTACTGAAGTACAAATAGGGGCACGTAAGTGCAA--AAGG
1 GGTACCGAAGTACAAATAGGGGCACATAAGTACAATCAA-G
* *
60413384 GGTATCGAAGTACAAACAGGGGCACATAAGTACAATCAAG
1 GGTACCGAAGTACAAATAGGGGCACATAAGTACAATCAAG
* * *
60413424 GGTACCGAAGTACAAATAGGGTCGCATAAGTGCAATC-AG
1 GGTACCGAAGTACAAATAGGGGCACATAAGTACAATCAAG
60413463 GGTA
1 GGTA
60413467 TAATTTACGT
Statistics
Matches: 104, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
38 1 0.01
39 37 0.36
40 64 0.62
41 2 0.02
ACGTcount: A:0.38, C:0.14, G:0.30, T:0.19
Consensus pattern (40 bp):
GGTACCGAAGTACAAATAGGGGCACATAAGTACAATCAAG
Found at i:60418673 original size:68 final size:68
Alignment explanation
Indices: 60418523--60418680 Score: 160
Period size: 68 Copynumber: 2.3 Consensus size: 68
60418513 CTAGCCAATT
* * *
60418523 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACA
**
60418588 TTTA
65 CATA
* * *
60418592 TCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTA
60418654 CTACATA
63 C-ACATA
*
60418661 GTATCTCGTAGCTCTTTTGT
1 -TATCTCGTAGCTCTCTTGT
60418681 ACACATGATG
Statistics
Matches: 74, Mismatches: 10, Indels: 11
0.78 0.11 0.12
Matches are distributed among these distances:
68 35 0.47
69 7 0.09
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACAC
ATA
Found at i:60435664 original size:40 final size:40
Alignment explanation
Indices: 60435614--60435801 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
60435604 TTGACGACAA
* *
60435614 TTCGGTTATGTATGGCACTTAGTGTGCTATTCGAGATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGCTATTTGAGATAGC
60435654 TTCGGCTATGTATGGCACTTAGTGTGCTATTTGAGATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGCTATTTGAGATAGC
*
60435694 TTCGGCTACGTATGGCACTTAGTGTG-TGATTTGAGATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGCT-ATTTGAGATAGC
* * * * * *
60435734 TTCGGCTATGTATTGCACTTAGTGTTCGAGATTAAAATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGCTA-TTTGAGATAGC
*
60435775 TTCGGCTATGTATTTGCACTTAGTGTG
1 TTCGGCTATGTA-TGGCACTTAGTGTG
60435802 AGAGAATTCG
Statistics
Matches: 133, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 99 0.74
41 20 0.15
42 13 0.10
ACGTcount: A:0.21, C:0.15, G:0.27, T:0.38
Consensus pattern (40 bp):
TTCGGCTATGTATGGCACTTAGTGTGCTATTTGAGATAGC
Found at i:60435892 original size:24 final size:24
Alignment explanation
Indices: 60435864--60435913 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
60435854 TTGGTTCAAG
60435864 TATGTATATAAATCATACGAGCTT
1 TATGTATATAAATCATACGAGCTT
*
60435888 TATGTATATGAATCATACGAGCTT
1 TATGTATATAAATCATACGAGCTT
60435912 TA
1 TA
60435914 AATTGAAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (24 bp):
TATGTATATAAATCATACGAGCTT
Found at i:60440812 original size:40 final size:40
Alignment explanation
Indices: 60440746--60441010 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
60440736 ACAATTCAGT
* * *
60440746 TATGTATGGCACTTAGTGTTCTATTCGAGATAACTTCGGC
1 TATGTATGGCACTTAGTGTGCGATTCGAGATAGCTTCGGC
* * *
60440786 GATCTATGGCACTTAGTGTGCGATTCGAGATAGCTTCGCC
1 TATGTATGGCACTTAGTGTGCGATTCGAGATAGCTTCGGC
* * * *
60440826 TATGTATGCCACTTAGGGTACGATTCGAGATAGCGTCGGC
1 TATGTATGGCACTTAGTGTGCGATTCGAGATAGCTTCGGC
* * *
60440866 TATATACT-GCACTTAGTGTGTGATTCGAGATAGCTTCAGC
1 TATGTA-TGGCACTTAGTGTGCGATTCGAGATAGCTTCGGC
*
60440906 TATGTATTGCACTTAGTGTGCGATTCGAGATAGCTTCGGC
1 TATGTATGGCACTTAGTGTGCGATTCGAGATAGCTTCGGC
* * *
60440946 TATGTATGGCACTTAGTGTGCGAGATT-AAAATAGCTTCGAC
1 TATGTATGGCACTTAGTGTGC--GATTCGAGATAGCTTCGGC
* *
60440987 AATGTATTGTCACTTAGTGTGCGA
1 TATGTA-TGGCACTTAGTGTGCGA
60441011 GAATTTGAGT
Statistics
Matches: 191, Mismatches: 29, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
39 1 0.01
40 155 0.81
41 17 0.09
42 18 0.09
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (40 bp):
TATGTATGGCACTTAGTGTGCGATTCGAGATAGCTTCGGC
Found at i:60441108 original size:33 final size:33
Alignment explanation
Indices: 60441071--60441146 Score: 136
Period size: 33 Copynumber: 2.3 Consensus size: 33
60441061 TGGTTCAGGT
60441071 ATGTATATGAATCTTACGAGATTTAAATTTAAG
1 ATGTATATGAATCTTACGAGATTTAAATTTAAG
60441104 ATGTATATGAATCTTACGAGATTTAAATTTAAG
1 ATGTATATGAATCTTACGAGATTTAAATTTAAG
*
60441137 AAGT-TATGAA
1 ATGTATATGAA
60441147 GTTTGAACAT
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
32 6 0.14
33 36 0.86
ACGTcount: A:0.41, C:0.05, G:0.16, T:0.38
Consensus pattern (33 bp):
ATGTATATGAATCTTACGAGATTTAAATTTAAG
Found at i:60442260 original size:12 final size:12
Alignment explanation
Indices: 60442226--60442260 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
60442216 TTTGGAATGG
*
60442226 CCTAGCACACAA
1 CCTAGCACACGA
60442238 CCTAGCACACGA
1 CCTAGCACACGA
60442250 CCTAGCACACG
1 CCTAGCACACG
60442261 GGTGTGTGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.34, C:0.43, G:0.14, T:0.09
Consensus pattern (12 bp):
CCTAGCACACGA
Found at i:60445805 original size:26 final size:26
Alignment explanation
Indices: 60445776--60445825 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
60445766 CCGAATGCCT
60445776 AAAACGTGAGCGTTTGATCGTGGAGG
1 AAAACGTGAGCGTTTGATCGTGGAGG
60445802 AAAACGTGAGCGTTTGATCGTGGA
1 AAAACGTGAGCGTTTGATCGTGGA
60445826 AGCTACCGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.12, G:0.36, T:0.24
Consensus pattern (26 bp):
AAAACGTGAGCGTTTGATCGTGGAGG
Found at i:60453557 original size:16 final size:16
Alignment explanation
Indices: 60453536--60453603 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
60453526 TTTGGTTCGC
*
60453536 TGTATTGGATTAAAGG
1 TGTATTGGATTAGAGG
60453552 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
60453568 TGTAATGGATTAGAGG
1 TGTATTGGATTAGAGG
*
60453584 TGTATTGGAATAGAGG
1 TGTATTGGATTAGAGG
60453600 TGTA
1 TGTA
60453604 ATAGCAAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.29, C:0.00, G:0.35, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:60453640 original size:45 final size:44
Alignment explanation
Indices: 60453584--60453674 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
60453574 GGATTAGAGG
* *
60453584 TGTATTGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAG-AAATCAACTGTTTGGTTGAA
* ***
60453629 TGTAATGGAATAGAGGCGTAATAGTAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
60453673 TG
1 TG
60453675 GAATAGAGAT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 18 0.45
45 22 0.55
ACGTcount: A:0.31, C:0.05, G:0.29, T:0.35
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
Found at i:60453860 original size:18 final size:17
Alignment explanation
Indices: 60453839--60453873 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
60453829 TTATTATTAA
*
60453839 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
60453857 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
60453874 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:60453986 original size:18 final size:17
Alignment explanation
Indices: 60453959--60453993 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
60453949 TTAATATTAA
*
60453959 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
60453977 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
60453994 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:60454038 original size:120 final size:119
Alignment explanation
Indices: 60453825--60454044 Score: 377
Period size: 120 Copynumber: 1.8 Consensus size: 119
60453815 ATATTTAAAC
* * *
60453825 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAG
1 ATAATTAATATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAACAG
60453890 ACTTATATGAATTTACTCAAATCATAATATATGATACTATAAATGAAAATTTGAA
66 ACTTATATGAATTTACTCAAATCATAATATA-GATACTATAAATGAAAATTTGAA
* *
60453945 ATAATTAATATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATAT
1 ATAATTAATATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAACAG
*
60454010 TCTTATATGAATTTACTCAAATCATAATATAGATA
66 ACTTATATGAATTTACTCAAATCATAATATAGATA
60454045 ATTTAACATA
Statistics
Matches: 94, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
119 4 0.04
120 90 0.96
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.42
Consensus pattern (119 bp):
ATAATTAATATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAACAG
ACTTATATGAATTTACTCAAATCATAATATAGATACTATAAATGAAAATTTGAA
Found at i:60454435 original size:13 final size:13
Alignment explanation
Indices: 60454417--60454441 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60454407 GCCTTAACAA
60454417 GAGCAGCACTCAT
1 GAGCAGCACTCAT
60454430 GAGCAGCACTCA
1 GAGCAGCACTCA
60454442 AAATAGATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.32, G:0.24, T:0.12
Consensus pattern (13 bp):
GAGCAGCACTCAT
Found at i:60457494 original size:15 final size:15
Alignment explanation
Indices: 60457474--60457525 Score: 59
Period size: 15 Copynumber: 3.2 Consensus size: 15
60457464 ACTACAAAAC
60457474 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
60457489 ATTTATAATTATAATAAAT
1 ATTTATTA-T-TAAT--AT
60457508 ATTTATTATTAATAT
1 ATTTATTATTAATAT
60457523 ATT
1 ATT
60457526 AATATTGAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
15 12 0.39
16 1 0.03
17 8 0.26
18 1 0.03
19 9 0.29
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:60457531 original size:17 final size:16
Alignment explanation
Indices: 60457477--60457531 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 16
60457467 ACAAAACATT
60457477 TATTATTAATATATTTA
1 TATTATTAATATA-TTA
60457494 TAATTA-TAATAAATATT-
1 T-ATTATTAAT--ATATTA
60457511 TATTATTAATATATTAA
1 TATTATTAATATATT-A
60457528 TATT
1 TATT
60457532 GAATATTTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
15 5 0.16
16 4 0.12
17 14 0.44
18 6 0.19
19 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TATTATTAATATATTA
Found at i:60460182 original size:37 final size:37
Alignment explanation
Indices: 60460117--60460266 Score: 187
Period size: 37 Copynumber: 3.9 Consensus size: 37
60460107 TACATATGAT
*
60460117 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
*
60460152 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
60460189 CACTTATCACTTTGTCTCTTGATCAGATAAATGTAGCTAAAGC
1 CACTTATCACTTTGTCTCTTGATCAGAT-AA-GT-G-T--AGC
60460232 TATCACTTATCACTTTGTCTCTTGATCAGATAAGT
1 ---CACTTATCACTTTGTCTCTTGATCAGATAAGT
60460267 ATATCCGAAG
Statistics
Matches: 101, Mismatches: 3, Indels: 13
0.86 0.03 0.11
Matches are distributed among these distances:
35 10 0.10
36 4 0.04
37 46 0.46
38 2 0.02
39 2 0.02
40 1 0.01
41 1 0.01
43 3 0.03
44 2 0.02
45 2 0.02
46 28 0.28
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
Found at i:60460242 original size:46 final size:46
Alignment explanation
Indices: 60460189--60460457 Score: 331
Period size: 46 Copynumber: 5.6 Consensus size: 46
60460179 TAAGTGTAGC
* * **
60460189 CACTTATCACTTTGTCTCTTGATCAGATAAATGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* * *
60460235 CACTTATCACTTTGTCTCTTGATCAGATAAGTATATCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
60460281 CACTTTTCACTTTTCACTTGTCACTTGATCAGATAAGTGTAACCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
60460333 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
60460385 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
60460431 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
60460458 AGTACTCAAA
Statistics
Matches: 202, Mismatches: 14, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
46 110 0.54
49 1 0.00
50 1 0.00
51 3 0.01
52 87 0.43
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:60460308 original size:52 final size:52
Alignment explanation
Indices: 60460232--60460451 Score: 299
Period size: 52 Copynumber: 4.3 Consensus size: 52
60460222 TAGCTAAAGC
* * *
60460232 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATATCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * *
60460285 TTTCACTTTTCACTTGTCACTTGATCAGATAAGTGTAACCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * *
60460337 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
60460389 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
60460435 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
60460452 ATCAGAAGTA
Statistics
Matches: 148, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
46 43 0.29
50 1 0.01
52 90 0.61
53 14 0.09
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:60460400 original size:98 final size:94
Alignment explanation
Indices: 60460189--60460457 Score: 321
Period size: 98 Copynumber: 2.8 Consensus size: 94
60460179 TAAGTGTAGC
* * ** *
60460189 CACTTATCACTTTGTCTCTTGATCAGATAAATGTAGCTAAAGCTATCACTTATCAC--TTTGTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTTTGTCA
*
60460252 CTTGATCAGATAAGTATATCCGAAGCTAT
66 CTTGATCAGATAAGTATAGCCGAAGCTAT
* *
60460281 CACTTTTCACTTTTCACTTGTCACTTGATCAGATAAGTGTAACCGAAGCTATCACTTATCACTTT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT
* *
60460346 CCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
60 ----TTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
60460385 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCAC--TTTGTCA
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTTTGTCA
60460448 CTTGATCAGA
66 CTTGATCAGA
60460458 AGTACTCAAA
Statistics
Matches: 152, Mismatches: 13, Indels: 24
0.80 0.07 0.13
Matches are distributed among these distances:
92 25 0.16
95 1 0.01
96 1 0.01
98 83 0.55
100 1 0.01
101 1 0.01
104 40 0.26
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (94 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTTTGTCA
CTTGATCAGATAAGTATAGCCGAAGCTAT
Found at i:60462585 original size:68 final size:68
Alignment explanation
Indices: 60462468--60462617 Score: 187
Period size: 68 Copynumber: 2.2 Consensus size: 68
60462458 CTATTACAAA
* * * * *
60462468 GGTCTTACACAGTATGATCCCATGTTTAATGTCCCAGTGGACTCTCTTTGTTGCCACAGTCGAGC
1 GGTCTTACACAATAGGAACCCATATTTAATGTCCCAGTGGACTCCCTTTGTTGCCACAGTCGAGC
60462533 TAT
66 TAT
* * *
60462536 GGTCTTACACAATAGGAACCCATATTTAATGTCCTGACG-GG-CTCCCTTTGTTGCCATAGTTGA
1 GGTCTTACACAATAGGAACCCATATTTAATGTCC-CA-GTGGACTCCCTTTGTTGCCACAGTCGA
*
60462599 GTTAT
64 GCTAT
60462604 GGTCTTACACAATA
1 GGTCTTACACAATA
60462618 TAACCTCTTT
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
68 67 0.94
69 3 0.04
70 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.33
Consensus pattern (68 bp):
GGTCTTACACAATAGGAACCCATATTTAATGTCCCAGTGGACTCCCTTTGTTGCCACAGTCGAGC
TAT
Found at i:60462782 original size:38 final size:39
Alignment explanation
Indices: 60462721--60462831 Score: 101
Period size: 35 Copynumber: 3.0 Consensus size: 39
60462711 AGAGTCGAGG
* **
60462721 GACCCTCGTCACAATGTCACTCTAGCGAGCCAGTTGATA
1 GACCGTCGTCACGGTGTCACTCTAGCGAGCCAGTTGATA
* * *
60462760 -ATCAC-T-GTCACGGTGTCGCTCTA--TAG--AGTCGATA
1 GA-C-CGTCGTCACGGTGTCACTCTAGCGAGCCAGTTGATA
60462794 GACCGTCGTCACGGTGTCACTCTAGCGAGCCAGTTGAT
1 GACCGTCGTCACGGTGTCACTCTAGCGAGCCAGTTGAT
60462832 GACATTCCAT
Statistics
Matches: 55, Mismatches: 8, Indels: 18
0.68 0.10 0.22
Matches are distributed among these distances:
33 1 0.02
34 9 0.16
35 17 0.31
36 2 0.04
37 2 0.04
38 15 0.27
39 8 0.15
40 1 0.02
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
GACCGTCGTCACGGTGTCACTCTAGCGAGCCAGTTGATA
Found at i:60462786 original size:73 final size:73
Alignment explanation
Indices: 60462694--60462831 Score: 213
Period size: 73 Copynumber: 1.9 Consensus size: 73
60462684 CTTATTGCCA
*
60462694 TCACGGTATCGCTCCATAGAGTCGAGGGACCCTCGTCACAATGTCACTCTAGCGAGCCAGTTGAT
1 TCACGGTATCGCTCCATAGAGTCGAGAGACCCTCGTCACAATGTCACTCTAGCGAGCCAGTTGAT
60462759 AATCACTG
66 AATCACTG
* * * * **
60462767 TCACGGTGTCGCTCTATAGAGTCGATAGACCGTCGTCACGGTGTCACTCTAGCGAGCCAGTTGAT
1 TCACGGTATCGCTCCATAGAGTCGAGAGACCCTCGTCACAATGTCACTCTAGCGAGCCAGTTGAT
60462832 GACATTCCAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
73 58 1.00
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (73 bp):
TCACGGTATCGCTCCATAGAGTCGAGAGACCCTCGTCACAATGTCACTCTAGCGAGCCAGTTGAT
AATCACTG
Found at i:60469246 original size:16 final size:16
Alignment explanation
Indices: 60469225--60469276 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
60469215 TTTGGTTCGC
60469225 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
60469241 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* * *
60469257 TGTAATGGAATAGATG
1 TGTATTGGATTAGAGG
60469273 TGTA
1 TGTA
60469277 ATAGCAAATC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.29, C:0.00, G:0.35, T:0.37
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:60469323 original size:45 final size:44
Alignment explanation
Indices: 60469257--60469351 Score: 118
Period size: 45 Copynumber: 2.1 Consensus size: 44
60469247 GGATTAGAGG
* * * *
60469257 TGTAATGGAATAGATGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAAAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
60469302 TGTAATGGAATAAAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAAAGGCGTAATAGCAAAACACTGTTTGGTTGAA
60469346 TGTAAT
1 TGTAAT
60469352 AGAGGTGTAA
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 18 0.42
45 25 0.58
ACGTcount: A:0.36, C:0.05, G:0.25, T:0.34
Consensus pattern (44 bp):
TGTAATGGAATAAAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:60469534 original size:18 final size:17
Alignment explanation
Indices: 60469513--60469547 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
60469503 TTATTATTTA
*
60469513 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
60469531 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
60469548 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:60469541 original size:28 final size:27
Alignment explanation
Indices: 60469471--60469543 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
60469461 TTTATTATCA
*
60469471 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
60469499 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
60469526 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
60469544 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:60475888 original size:27 final size:26
Alignment explanation
Indices: 60475840--60475899 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
60475830 GCGAGGCTGC
*
60475840 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
60475867 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
60475893 CAGATAT
1 CAGATAT
60475900 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:60476705 original size:27 final size:27
Alignment explanation
Indices: 60476641--60476812 Score: 186
Period size: 27 Copynumber: 6.4 Consensus size: 27
60476631 GGGGCAAAAT
* * *
60476641 GGTAATTTTACCCCACAAGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
60476667 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
60476694 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
60476721 GGTATTTCTATCCTACAGGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
60476748 -AAAAGTTCTACCCTACAGGGGTATTTT
1 GGTAA-TTCTACCCTACAGGGGTATTTC
* *
60476775 GGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
60476802 GGTAATTCTAC
1 GGTAATTCTAC
60476813 AACTTATCGA
Statistics
Matches: 120, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
26 20 0.17
27 98 0.82
28 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:60482878 original size:71 final size:67
Alignment explanation
Indices: 60482776--60482959 Score: 251
Period size: 71 Copynumber: 2.7 Consensus size: 67
60482766 GAACATATAT
* *
60482776 ATATATATATGTGGCAAAGCCACTATATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCA
1 ATATATATATGTGGCAAAGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCA
60482841 GAA
66 G-A
* *
60482844 TGGATATATATATGTGGCAAAGCCACCAGATTGCAGCAAGGCTGTCAGATATTGTGACGAAGTCA
1 ---ATATATATATGTGGCAAAGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCA
*
60482909 CTAGA
63 CCAGA
* * * *
60482914 ATAGATATATGTGGCGAGGCCACCAGATTGCAGTGAGGCTGCCAGA
1 ATATATATATGTGGCAAAGCCACCAGATTGCAGCGAGGCTGCCAGA
60482960 ACACTTCCTC
Statistics
Matches: 102, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
67 40 0.39
70 1 0.01
71 61 0.60
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.23
Consensus pattern (67 bp):
ATATATATATGTGGCAAAGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCA
GA
Found at i:60483787 original size:27 final size:27
Alignment explanation
Indices: 60483591--60483790 Score: 276
Period size: 27 Copynumber: 7.4 Consensus size: 27
60483581 GGGGCAAAAT
* * **
60483591 GGTAATTTTACCAC-ACAAGGGTATCGC
1 GGTAATTCTACC-CTACAGGGGTATTTC
60483618 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
60483645 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
60483672 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
60483699 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
60483726 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
60483753 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
60483780 GATAATTCTAC
1 GGTAATTCTAC
60483791 AACTTATCCA
Statistics
Matches: 154, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
26 1 0.01
27 153 0.99
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:60486185 original size:28 final size:28
Alignment explanation
Indices: 60486154--60486210 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
60486144 CAAAATAAAC
60486154 ACAGAAAATAATTTTAAAATATTTTTCT
1 ACAGAAAATAATTTTAAAATATTTTTCT
60486182 ACAGAAAATAATTTTAAAATATTTTTCT
1 ACAGAAAATAATTTTAAAATATTTTTCT
60486210 A
1 A
60486211 ACTTAGATTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.47, C:0.07, G:0.04, T:0.42
Consensus pattern (28 bp):
ACAGAAAATAATTTTAAAATATTTTTCT
Found at i:60489982 original size:27 final size:27
Alignment explanation
Indices: 60489944--60490000 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
60489934 CTAAACAACC
60489944 AAAATGACACCAATTTATAATATAAAT
1 AAAATGACACCAATTTATAATATAAAT
60489971 AAAATGACACCAATTTATAATATAAAT
1 AAAATGACACCAATTTATAATATAAAT
60489998 AAA
1 AAA
60490001 CATCCAATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.58, C:0.11, G:0.04, T:0.28
Consensus pattern (27 bp):
AAAATGACACCAATTTATAATATAAAT
Found at i:60490833 original size:41 final size:40
Alignment explanation
Indices: 60490767--60490883 Score: 144
Period size: 41 Copynumber: 2.9 Consensus size: 40
60490757 TTCATGGCCA
* * *
60490767 AAGCTATCCCAAATCATACACTAAGTGCCATATATAGCCG
1 AAGCTATCTCGAATCACACACTAAGTGCCATATATAGCCG
* *
60490807 AAGCTATCTCGATCTCACACACTAAGTGCCATATATAGTCG
1 AAGCTATCTCGA-ATCACACACTAAGTGCCATATATAGCCG
* * * *
60490848 AAGCTATGTCGAATCGCACACTAGGTACCATATATA
1 AAGCTATCTCGAATCACACACTAAGTGCCATATATA
60490884 TAGCTAATTT
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
40 30 0.45
41 36 0.55
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.25
Consensus pattern (40 bp):
AAGCTATCTCGAATCACACACTAAGTGCCATATATAGCCG
Found at i:60501823 original size:72 final size:72
Alignment explanation
Indices: 60501706--60501849 Score: 279
Period size: 72 Copynumber: 2.0 Consensus size: 72
60501696 CCATGTTATA
60501706 TGTTTTTTATTTTGTATAAGTGTGTAAGAGATTAAGGTTGACCAAAGCTTGGAAAATAGCCTAGG
1 TGTTTTTTATTTTGTATAAGTGTGTAAGAGATTAAGGTTGACCAAAGCTTGGAAAATAGCCTAGG
60501771 TATATTC
66 TATATTC
*
60501778 TGTTTTTTATTTTGTATAAGTGTGTAAGAGATTAAGGTTGACCAAAGCTTGGAAAATAGTCTAGG
1 TGTTTTTTATTTTGTATAAGTGTGTAAGAGATTAAGGTTGACCAAAGCTTGGAAAATAGCCTAGG
60501843 TATATTC
66 TATATTC
60501850 CACACAGGCA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.40
Consensus pattern (72 bp):
TGTTTTTTATTTTGTATAAGTGTGTAAGAGATTAAGGTTGACCAAAGCTTGGAAAATAGCCTAGG
TATATTC
Found at i:60503122 original size:29 final size:28
Alignment explanation
Indices: 60503080--60503136 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 28
60503070 TTTGGGACCA
* *
60503080 CAAAATCTGAGATATAAATAATTATTTT
1 CAAAATCCGAGATAGAAATAATTATTTT
*
60503108 NCAAAATCCGAGATAGAAGTAATTATTTT
1 -CAAAATCCGAGATAGAAATAATTATTTT
60503137 ATGATTATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.44, C:0.09, G:0.11, T:0.35
Consensus pattern (28 bp):
CAAAATCCGAGATAGAAATAATTATTTT
Found at i:60508602 original size:37 final size:37
Alignment explanation
Indices: 60508546--60508624 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
60508536 CCGAGCTCTA
* * *
60508546 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
60508583 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
60508620 AAGAC
1 AAGAC
60508625 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:60514108 original size:44 final size:44
Alignment explanation
Indices: 60513985--60514112 Score: 115
Period size: 44 Copynumber: 3.0 Consensus size: 44
60513975 ATTCAGTATT
* * *
60513985 GATGCCTCTGTCCCAGACAGGGTCTTATACGA-AA--TCAGATAC
1 GATGCCTGTGTCCCAGACACGGTCTTACAC-ATAATTTCAGATAC
* * * *
60514027 GATG-CTGATATCCAAGACATGGTCTTACACATAAATTTCA-ATTC
1 GATGCCTG-TGTCCCAGACACGGTCTTACACAT-AATTTCAGATAC
60514071 GATGCCTGTGTCCCAGACACGGTCTTACACAATAATTT-AGAT
1 GATGCCTGTGTCCCAGACACGGTCTTACAC-ATAATTTCAGAT
60514113 CAATACCAAC
Statistics
Matches: 69, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
41 3 0.04
42 22 0.32
43 3 0.04
44 33 0.48
45 8 0.12
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.28
Consensus pattern (44 bp):
GATGCCTGTGTCCCAGACACGGTCTTACACATAATTTCAGATAC
Found at i:60517991 original size:15 final size:15
Alignment explanation
Indices: 60517971--60518002 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
60517961 TTAGTATGTG
*
60517971 TTATTGTTATTTAAC
1 TTATTGTTATTCAAC
60517986 TTATTGTTATTCAAC
1 TTATTGTTATTCAAC
60518001 TT
1 TT
60518003 GTTATAAGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.09, G:0.06, T:0.59
Consensus pattern (15 bp):
TTATTGTTATTCAAC
Found at i:60522175 original size:27 final size:27
Alignment explanation
Indices: 60522145--60522322 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
60522135 ATATTGAGTC
* * * *
60522145 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
60522172 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
60522199 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
60522227 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
60522254 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
60522281 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
60522308 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60522323 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:60522284 original size:82 final size:81
Alignment explanation
Indices: 60522166--60522321 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
60522156 TGCTATATAA
* *
60522166 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
60522231 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
60522248 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
60522312 CACTTAGTGC
65 CACTTAGTGC
60522322 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:60525778 original size:27 final size:27
Alignment explanation
Indices: 60525748--60525925 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
60525738 ATATTGAGTC
* * * *
60525748 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
60525775 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
60525802 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
60525830 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
60525857 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
60525884 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
60525911 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60525926 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:60525887 original size:82 final size:81
Alignment explanation
Indices: 60525769--60525924 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
60525759 TGCTATATAA
* *
60525769 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
60525834 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
60525851 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
60525915 CACTTAGTGC
65 CACTTAGTGC
60525925 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:60537845 original size:43 final size:43
Alignment explanation
Indices: 60537798--60537913 Score: 148
Period size: 41 Copynumber: 2.7 Consensus size: 43
60537788 TATGTGTTCT
60537798 CGTGTAAGACCACGTCTGGGACGTTGGCATTGATAAGTGATTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATTGATAAGTGATTA
* * * *
60537841 CGTGTAAGACC-CTGTTTGGGAAG-TGGCA-TAATATGTGATTA
1 CGTGTAAGACCAC-GTCTGGGACGTTGGCATTGATAAGTGATTA
**
60537882 CACGTAAGACCACGTCTGGGACGTTGGCATTG
1 CGTGTAAGACCACGTCTGGGACGTTGGCATTG
60537914 TATGATATGT
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
41 28 0.47
42 12 0.20
43 20 0.33
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATTGATAAGTGATTA
Found at i:60540830 original size:28 final size:29
Alignment explanation
Indices: 60540720--60540834 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
60540710 GTGAGCATCA
* * *
60540720 ATATGAATGTGA-CTGGGCTTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
60540748 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
60540777 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
60540806 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
60540834 A
1 A
60540835 AATACAGGTA
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 28 0.37
29 47 0.62
30 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:60540840 original size:57 final size:58
Alignment explanation
Indices: 60540733--60540843 Score: 161
Period size: 57 Copynumber: 1.9 Consensus size: 58
60540723 TGAATGTGAC
* * *
60540733 TGGGCTTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAAATACAGGTGATT
* * *
60540791 TGGGCCTAATGGGCCATATGAATATGA-TTGGGCTTAATGGGCCAAATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAAATACAGGT
60540844 ATGTAAATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 24 0.51
58 23 0.49
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (58 bp):
TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAAATACAGGTGATT
Found at i:60545190 original size:55 final size:52
Alignment explanation
Indices: 60545131--60545328 Score: 179
Period size: 53 Copynumber: 3.8 Consensus size: 52
60545121 GTAAGGTTTC
* *
60545131 TAAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTA
1 TAAGGCAAGG-TACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-C-A
* * * * * *
60545186 TAAGGCAAAGGTCCCATGTAAGACCATGCCAAGGCATGACATTGGTGAGTTCA
1 TAAGGC-AAGGTACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCA
* * *
60545239 TAAGGCAAGGCTACCATGTAAGACCATGTCAAGACATGGAAATGGTAAGTTTCA
1 TAAGGCAAGG-TACCATGTAAGACCATGTCAAGACATGGCATTGATAAG-TTCA
* * * *
60545293 AAAGG--A--TACCACGTAAGACCATGACAAGTCATGGCA
1 TAAGGCAAGGTACCATGTAAGACCATGTCAAGACATGGCA
60545329 ATGGTAAGGT
Statistics
Matches: 120, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
49 26 0.22
52 5 0.04
53 38 0.32
54 9 0.08
55 38 0.32
56 4 0.03
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (52 bp):
TAAGGCAAGGTACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCA
Found at i:60545554 original size:16 final size:16
Alignment explanation
Indices: 60545533--60545563 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
60545523 ATAAATCTAA
60545533 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
60545549 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
60545564 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:60555384 original size:22 final size:21
Alignment explanation
Indices: 60555344--60555384 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
60555334 CACGTTAGAT
*
60555344 AAGGGCACACGCCCGTGTGGG
1 AAGGGCACACGCCCATGTGGG
*
60555365 AAGGGCAACATGCCCATGTG
1 AAGGGC-ACACGCCCATGTG
60555385 ACCATATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.24, C:0.27, G:0.37, T:0.12
Consensus pattern (21 bp):
AAGGGCACACGCCCATGTGGG
Found at i:60556745 original size:48 final size:47
Alignment explanation
Indices: 60556499--60556865 Score: 227
Period size: 48 Copynumber: 7.7 Consensus size: 47
60556489 AGGGTATAAT
* * *
60556499 GCCGATGTCATGTCCCAGACATGGTCTTACATTGG-TTCATGTC-TGAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTC-T-TCATGAG
* * * * * * *
60556546 GTCGATGCCATATCCCAAACATGGTATTACGCTGACTATCGTCATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TCTTCAT-GAG
* *
60556595 GCCGATGCCATGTCCCTGACATGGTCTTACACTTGC-TCTTGCAT-ATTTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCTT-CATGA---G
* * * * * *
60556644 TGTCGATGCCATGTCCGAGATATGGTCTTACACTGAC-ACCTCTAT-ACG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCTTC-ATGA-G
60556692 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACTTCATGAG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTT-CTTCATGAG
* * * * *
60556741 GCCGATG-CATATCCGAGACAT-GTCTTAAACTAGCTCTCGTCTCA--AT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TC-T-TCATGAG
* * * * *
60556787 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TCTTCATGAG
* *
60556835 GCAGATG-CATGTCCCAGGCAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
60556866 AGCTCACAAT
Statistics
Matches: 251, Mismatches: 49, Indels: 41
0.74 0.14 0.12
Matches are distributed among these distances:
46 34 0.14
47 70 0.28
48 71 0.28
49 37 0.15
50 39 0.16
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.29
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCTTCATGAG
Found at i:60556807 original size:94 final size:94
Alignment explanation
Indices: 60556692--60556870 Score: 252
Period size: 94 Copynumber: 1.9 Consensus size: 94
60556682 CCTCTATACG
* * * * *
60556692 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACTTCATGAGGCCGATGCATATCCG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAATGAGGCAGATGCATATCCC
60556756 AGACATGTCTTAAACTAGCTCTCGTCTCAA
65 AGACATGTCTTAAACTAGCTCTCGTCTCAA
* * *
60556786 TGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAATGTGGCAGATGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGAGGCAGATGCATATCCCA
* *
60556851 GGCATGTCTTACACTAGCTC
66 GACATGTCTTAAACTAGCTC
60556871 ACAATAACCC
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
94 73 0.99
95 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (94 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGAGGCAGATGCATATCCCA
GACATGTCTTAAACTAGCTCTCGTCTCAA
Found at i:60557506 original size:13 final size:13
Alignment explanation
Indices: 60557488--60557512 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60557478 CTAAAAGTAC
60557488 AAAAATCATCAAG
1 AAAAATCATCAAG
60557501 AAAAATCATCAA
1 AAAAATCATCAA
60557513 AATCACTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:60558384 original size:53 final size:53
Alignment explanation
Indices: 60558322--60558427 Score: 167
Period size: 53 Copynumber: 2.0 Consensus size: 53
60558312 AGCCAAACGA
* * *
60558322 TAGGCCACAGACCCTACTCTTTTGGTAACCTCATAAAGTCCTATGAAATGAGG
1 TAGGCCACAGACCCTACTCTCTCGGTAACCTCATAAAGTCCTATGAAACGAGG
* *
60558375 TAGGCCACAGGCCCTACTCTCTCGGTAACCTCATAAGGTCCTATGAAACGAGG
1 TAGGCCACAGACCCTACTCTCTCGGTAACCTCATAAAGTCCTATGAAACGAGG
60558428 ACTCAACTTG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (53 bp):
TAGGCCACAGACCCTACTCTCTCGGTAACCTCATAAAGTCCTATGAAACGAGG
Found at i:60571571 original size:40 final size:40
Alignment explanation
Indices: 60571477--60571630 Score: 206
Period size: 40 Copynumber: 3.9 Consensus size: 40
60571467 ATTTGGATGA
** * *
60571477 AAAT-CGGGCTAAGTCCCGAAGGCATTTGCACTAGTGACT
1 AAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
60571516 -AATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 AAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
60571555 AAATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 AAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
60571595 CTAA-CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 -AAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
60571631 AGTTATATCC
Statistics
Matches: 103, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
38 3 0.03
39 31 0.30
40 67 0.65
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
AAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:60579692 original size:39 final size:40
Alignment explanation
Indices: 60579631--60579775 Score: 197
Period size: 40 Copynumber: 3.6 Consensus size: 40
60579621 AGTGACCATA
*
60579631 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
60579671 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
60579710 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
60579749 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
60579776 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
39 36 0.39
40 57 0.61
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:60579797 original size:79 final size:79
Alignment explanation
Indices: 60579644--60579808 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
60579634 GGACTAAGAT
* **
60579644 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
60579709 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
60579723 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
60579786 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
60579802 CCGAAGG
1 CCGAAGG
60579809 TATGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:60599724 original size:27 final size:27
Alignment explanation
Indices: 60599686--60599805 Score: 152
Period size: 27 Copynumber: 4.4 Consensus size: 27
60599676 AGTTAGGGGT
***
60599686 AGTCATTTTACCTCATAACTCCAAAAC
1 AGTCATTTTACCTCATAAAGGCAAAAC
60599713 AGTCATTTTACCTCATAAAGGCAAAAC
1 AGTCATTTTACCTCATAAAGGCAAAAC
* * *
60599740 TGTCATTTTACCTCATAAGGGCAATAC
1 AGTCATTTTACCTCATAAAGGCAAAAC
* *
60599767 TGTCATTTTACCTCATAAGGGCAAAAC
1 AGTCATTTTACCTCATAAAGGCAAAAC
60599794 TA-TCATTTTACC
1 -AGTCATTTTACC
60599806 AATTTGAGGG
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 84 1.00
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.32
Consensus pattern (27 bp):
AGTCATTTTACCTCATAAAGGCAAAAC
Found at i:60599748 original size:54 final size:54
Alignment explanation
Indices: 60599687--60599805 Score: 175
Period size: 54 Copynumber: 2.2 Consensus size: 54
60599677 GTTAGGGGTA
*
60599687 GTCATTTTACCTCATAACTCCAAAACAGTCATTTTACCTCATAAAGGCAAAACT
1 GTCATTTTACCTCATAACGCCAAAACAGTCATTTTACCTCATAAAGGCAAAACT
* * * * *
60599741 GTCATTTTACCTCATAAGGGCAATACTGTCATTTTACCTCATAAGGGCAAAACT
1 GTCATTTTACCTCATAACGCCAAAACAGTCATTTTACCTCATAAAGGCAAAACT
*
60599795 ATCATTTTACC
1 GTCATTTTACC
60599806 AATTTGAGGG
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.32
Consensus pattern (54 bp):
GTCATTTTACCTCATAACGCCAAAACAGTCATTTTACCTCATAAAGGCAAAACT
Found at i:60600647 original size:23 final size:24
Alignment explanation
Indices: 60600601--60600656 Score: 78
Period size: 23 Copynumber: 2.4 Consensus size: 24
60600591 GAGAAAGAGT
*
60600601 ATAGGGAGTCCAAGAATTTAGCTA
1 ATAGGGAGTCCAAGAATTCAGCTA
*
60600625 ATAGGGAGTCC-AGAATTCGGCTA
1 ATAGGGAGTCCAAGAATTCAGCTA
*
60600648 AAAGGGAGT
1 ATAGGGAGT
60600657 GAAAATAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 18 0.62
24 11 0.38
ACGTcount: A:0.36, C:0.12, G:0.30, T:0.21
Consensus pattern (24 bp):
ATAGGGAGTCCAAGAATTCAGCTA
Found at i:60602618 original size:47 final size:45
Alignment explanation
Indices: 60602424--60602729 Score: 183
Period size: 47 Copynumber: 6.6 Consensus size: 45
60602414 GCGTGTTGAT
* * * * *
60602424 GCATGTCCCAGACATGTCTTACACTAGCAC-AACTCT-TAGCC-AA
1 GCATGTCCCAGACATGTCTTACACTGGCTCTCA-TATATGGCCGAA
* * * *
60602467 TGCGTGTCCCAGACACGTCTTACACTGGCTATCTC-TGTCGA-GGCCGAT
1 -GCATGTCCCAGACATGTCTTACACTGGC--TCTCATAT--ATGGCCGAA
* * * * * * *
60602515 GCATGTCCCAAACATGTCCTACTCTGGCACTCATTTCTGTGCCGAT
1 GCATGTCCCAGACATGTCTTACACTGGCTCTCATATATG-GCCGAA
* * *
60602561 GCCATCTCCCAAACATGGTCTTACACTGGCTCTCATAATATGGCTGAA
1 G-CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-ATATGGCCGAA
* * * * * *
60602609 GCATGTCCCAGACATATCTTACACTAGCCCTCATCTGGAT-GCTGAT
1 GCATGTCCCAGACATGTCTTACACTGGCTCTCATAT--ATGGCCGAA
* * *
60602655 GCCATGTCCCAGACATGGTCTTACATTGGCTCTCTTAATGTGGCCGAA
1 G-CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-ATATGGCCGAA
60602703 GCATGTCCCAGACATGTCTTACACTGG
1 GCATGTCCCAGACATGTCTTACACTGG
60602730 TGCACAAATC
Statistics
Matches: 202, Mismatches: 41, Indels: 36
0.72 0.15 0.13
Matches are distributed among these distances:
44 25 0.12
45 7 0.03
46 43 0.21
47 82 0.41
48 41 0.20
49 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (45 bp):
GCATGTCCCAGACATGTCTTACACTGGCTCTCATATATGGCCGAA
Found at i:60602618 original size:94 final size:94
Alignment explanation
Indices: 60602508--60602729 Score: 286
Period size: 94 Copynumber: 2.4 Consensus size: 94
60602498 TCTCTGTCGA
* * * *
60602508 GGCCGATGCATGTCCCAAACATGTCCTACTCTGGCACTCATTTCT-G-TGCCGATGCCATCTCCC
1 GGCCGAAGCATGTCCCAGACATGTCTTACACTGGCACTCA--TCTGGATGCCGATGCCATCTCCC
60602571 AAACATGGTCTTACACTGGCTCTCATAATAT
64 AAACATGGTCTTACACTGGCTCTCATAATAT
* * * * * * *
60602602 GGCTGAAGCATGTCCCAGACATATCTTACACTAGCCCTCATCTGGATGCTGATGCCATGTCCCAG
1 GGCCGAAGCATGTCCCAGACATGTCTTACACTGGCACTCATCTGGATGCCGATGCCATCTCCCAA
* * *
60602667 ACATGGTCTTACATTGGCTCTCTTAATGT
66 ACATGGTCTTACACTGGCTCTCATAATAT
60602696 GGCCGAAGCATGTCCCAGACATGTCTTACACTGG
1 GGCCGAAGCATGTCCCAGACATGTCTTACACTGG
60602730 TGCACAAATC
Statistics
Matches: 109, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
92 3 0.03
93 1 0.01
94 105 0.96
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (94 bp):
GGCCGAAGCATGTCCCAGACATGTCTTACACTGGCACTCATCTGGATGCCGATGCCATCTCCCAA
ACATGGTCTTACACTGGCTCTCATAATAT
Found at i:60613792 original size:40 final size:39
Alignment explanation
Indices: 60613748--60613888 Score: 180
Period size: 40 Copynumber: 3.6 Consensus size: 39
60613738 GCTCCTCGTT
60613748 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGTTATAGTAATTCGCA
* * *
60613788 CAAATGCCTTTGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGG-TTATAGTAATTCGCA
*
60613828 CAAATGCCTTCGGGCTTAGCCCGG-AATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGTTA-TAGTAAT-TCGCA
60613867 CAAATGCCTTCGGGCTTAGCCC
1 CAAATGCCTTCGGGCTTAGCCC
60613889 AGAATTAGTA
Statistics
Matches: 90, Mismatches: 7, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
38 1 0.01
39 40 0.44
40 47 0.52
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGTTATAGTAATTCGCA
Found at i:60613865 original size:39 final size:40
Alignment explanation
Indices: 60613748--60613907 Score: 220
Period size: 39 Copynumber: 4.0 Consensus size: 40
60613738 GCTCCTCGTT
*
60613748 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
60613788 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
60613828 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
60613867 CAAATGCCTTCGGG-CTTAGCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
60613906 CA
1 CA
60613908 TCTAACAATA
Statistics
Matches: 110, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 63 0.57
40 45 0.41
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:60613866 original size:79 final size:79
Alignment explanation
Indices: 60613748--60613907 Score: 218
Period size: 79 Copynumber: 2.0 Consensus size: 79
60613738 GCTCCTCGTT
* * *
60613748 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCACAAATGCCTTTGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGG-CTTAACCCAG
*
60613813 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
*
60613828 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTCGGGCTTAGCCCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGGCTTAACCCA
*
60613890 GAATTAGTATCTCGCA
64 GAATTAGTAACTCGCA
60613906 CA
1 CA
60613908 TCTAACAATA
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
78 26 0.36
79 32 0.44
80 14 0.19
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGCTTAACCCAGA
ATTAGTAACTCGCA
Found at i:60618749 original size:27 final size:27
Alignment explanation
Indices: 60618718--60618895 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
60618708 TAAATTGTAC
60618718 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
60618745 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60618771 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
60618799 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
60618827 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60618854 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60618881 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60618896 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60618832 original size:82 final size:81
Alignment explanation
Indices: 60618719--60618874 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
60618709 AAATTGTACA
* *
60618719 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
60618783 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
60618800 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
60618865 TGCGAGTTGA
65 TGCGAATTGA
60618875 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:60618886 original size:82 final size:81
Alignment explanation
Indices: 60618715--60618895 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
60618705 GATTAAATTG
* *
60618715 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
60618780 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
60618796 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
60618860 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
60618878 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
60618896 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:60628251 original size:79 final size:81
Alignment explanation
Indices: 60628149--60628333 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
60628139 GCTCCTCGTT
* *
60628149 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACT
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTT-ACT
* *
60628211 -CGGATTTAGTAAC-TCGCA
62 CCGGATGTAGTAACTTAGCA
*
60628229 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTACTCCGG
* *
60628293 ATGTGGTCACTTAGCA
66 ATGTAGTAACTTAGCA
60628309 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
60628334 CATCATTCAA
Statistics
Matches: 92, Mismatches: 7, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
78 7 0.08
79 51 0.55
80 34 0.37
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTACTCCGG
ATGTAGTAACTTAGCA
Found at i:60628333 original size:40 final size:39
Alignment explanation
Indices: 60628149--60628333 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 39
60628139 GCTCCTCGTT
* * *
60628149 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTACTTCGCA
* *
60628189 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGT-ACTTCGCA
60628229 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTA-TCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTAGTACT-TCGCA
* * *
60628268 CAAATGCCTTC-GGATCTTAGTCCGGATGTGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGT-ACTTCGCA
60628309 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
60628334 CATCATTCAA
Statistics
Matches: 123, Mismatches: 11, Indels: 22
0.79 0.07 0.14
Matches are distributed among these distances:
38 3 0.02
39 31 0.25
40 74 0.60
41 14 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTACTTCGCA
Found at i:60635562 original size:28 final size:27
Alignment explanation
Indices: 60635505--60635601 Score: 140
Period size: 27 Copynumber: 3.6 Consensus size: 27
60635495 TAAATTGTGC
*
60635505 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGAATATGT
*
60635532 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGAATATGT
* *
60635560 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGAATATGT
*
60635587 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60635602 GACTTAATAA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 38 0.59
28 26 0.41
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGAATATGT
Found at i:60650610 original size:23 final size:23
Alignment explanation
Indices: 60650584--60650699 Score: 81
Period size: 23 Copynumber: 5.4 Consensus size: 23
60650574 TCTTGAATGT
60650584 ATGAAAATTTAGATATTCATGGC
1 ATGAAAATTTAGATATTCATGGC
* * *
60650607 ATGATAATTCATGA-A---AT-GT
1 ATGAAAATTTA-GATATTCATGGC
60650626 ATGAAAATTTAGATATTCATGGC
1 ATGAAAATTTAGATATTCATGGC
* * *
60650649 ATGATAATTCATGA-A---AT-GT
1 ATGAAAATTTA-GATATTCATGGC
60650668 ATGAAAATTTAGATATTCATGGC
1 ATGAAAATTTAGATATTCATGGC
*
60650691 ATGATAATT
1 ATGAAAATT
60650700 CATGAAATGT
Statistics
Matches: 68, Mismatches: 13, Indels: 24
0.65 0.12 0.23
Matches are distributed among these distances:
18 4 0.06
19 22 0.32
20 4 0.06
22 4 0.06
23 30 0.44
24 4 0.06
ACGTcount: A:0.41, C:0.07, G:0.16, T:0.36
Consensus pattern (23 bp):
ATGAAAATTTAGATATTCATGGC
Found at i:60650638 original size:42 final size:42
Alignment explanation
Indices: 60650579--60650709 Score: 262
Period size: 42 Copynumber: 3.1 Consensus size: 42
60650569 CATGTTCTTG
60650579 AATGTATGAAAATTTAGATATTCATGGCATGATAATTCATGA
1 AATGTATGAAAATTTAGATATTCATGGCATGATAATTCATGA
60650621 AATGTATGAAAATTTAGATATTCATGGCATGATAATTCATGA
1 AATGTATGAAAATTTAGATATTCATGGCATGATAATTCATGA
60650663 AATGTATGAAAATTTAGATATTCATGGCATGATAATTCATGA
1 AATGTATGAAAATTTAGATATTCATGGCATGATAATTCATGA
60650705 AATGT
1 AATGT
60650710 GCTCGAGTAA
Statistics
Matches: 89, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 89 1.00
ACGTcount: A:0.40, C:0.07, G:0.17, T:0.36
Consensus pattern (42 bp):
AATGTATGAAAATTTAGATATTCATGGCATGATAATTCATGA
Found at i:60653227 original size:33 final size:33
Alignment explanation
Indices: 60653179--60653241 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
60653169 TGCCGTAGCG
* *
60653179 GTCTGGGCCTGAGCCCTATTCAGTAACAGTACA
1 GTCTAGGCCTGAGCCCTATACAGTAACAGTACA
* *
60653212 GTCTAGGCCTTAGCCCTATACAGTGACAGT
1 GTCTAGGCCTGAGCCCTATACAGTAACAGT
60653242 GTGGGCCTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (33 bp):
GTCTAGGCCTGAGCCCTATACAGTAACAGTACA
Found at i:60653426 original size:26 final size:27
Alignment explanation
Indices: 60653396--60653447 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
60653386 GCTACTAATA
60653396 ACAGTAA-ACATGGCAAAGCCACTAGT
1 ACAGTAATACATGGCAAAGCCACTAGT
* *
60653422 ACAGTAATTACGTGGCAGAGCCACTA
1 ACAGTAA-TACATGGCAAAGCCACTA
60653448 ATACTTCCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 7 0.32
28 15 0.68
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (27 bp):
ACAGTAATACATGGCAAAGCCACTAGT
Found at i:60655382 original size:31 final size:32
Alignment explanation
Indices: 60655325--60655386 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 32
60655315 ATGAAGTCAC
*
60655325 CAGATACATATATTGTGGCTAGGCCACCAGAA
1 CAGATACATATATTGTGGCTAAGCCACCAGAA
*
60655357 CAGATATATATA-TGTGG-TGAAGCCACCAGA
1 CAGATACATATATTGTGGCT-AAGCCACCAGA
60655387 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 1 0.04
31 15 0.56
32 11 0.41
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (32 bp):
CAGATACATATATTGTGGCTAAGCCACCAGAA
Found at i:60656137 original size:27 final size:27
Alignment explanation
Indices: 60656107--60656327 Score: 316
Period size: 27 Copynumber: 8.2 Consensus size: 27
60656097 GGTAAATTGA
60656107 TAATTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
* *
60656134 TAATTTTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
* ** **
60656161 TAATTTTACGTTACAATGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
* **
60656188 TAATTCTACCCTATAGGGGTATTTTGG
1 TAATTCTACCCTACAGGGGTATTTCAG
* *
60656215 TAATTCTACCTTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAG
60656242 TAATTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
* *
60656269 TAATTCTACCTTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAG
60656296 TAATTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
60656323 TAATT
1 TAATT
60656328 TTGCAAATCG
Statistics
Matches: 168, Mismatches: 26, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 168 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.38
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAG
Found at i:60658345 original size:31 final size:32
Alignment explanation
Indices: 60658288--60658349 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
60658278 ATGAAGTCAC
* *
60658288 CAGATATAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATAGATATTGTGGCGAAGCCACCAGAA
*
60658320 CAGATATATATA-TGTGGCGAAGCCACCAGA
1 CAGATATAGATATTGTGGCGAAGCCACCAGA
60658350 TTGCAGCGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.21
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCGAAGCCACCAGAA
Found at i:60659049 original size:26 final size:27
Alignment explanation
Indices: 60659000--60659191 Score: 273
Period size: 27 Copynumber: 7.2 Consensus size: 27
60658990 GGGTAAATCT
* *
60659000 GTAATACTACTCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
60659027 GTAATTCTACCTTA-AGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
60659053 TTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
60659080 GTAATTCTACCTTACAGGGAT-TTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
60659106 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
60659133 GTAATTCTACCTTACAGGGGCATTT-A
1 GTAATTCTACCCTACAGGGGTATTTCA
60659159 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
60659186 GTAATT
1 GTAATT
60659192 TTACAAATCG
Statistics
Matches: 144, Mismatches: 18, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
26 70 0.49
27 74 0.51
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:60659068 original size:53 final size:54
Alignment explanation
Indices: 60659000--60659191 Score: 300
Period size: 53 Copynumber: 3.6 Consensus size: 54
60658990 GGGTAAATCT
* *
60659000 GTAATACTACTCTACAGGGGTATTTCAGTAATTCTACCTTA-AGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCA
* * *
60659053 TTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGAT-TTTCA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCA
* *
60659106 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGCATTT-A
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCA
60659159 GTAATTCTACCCTACAGGGGTATTTCAGTAATT
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATT
60659192 TTACAAATCG
Statistics
Matches: 128, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
53 120 0.94
54 8 0.06
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCA
Found at i:60663770 original size:13 final size:13
Alignment explanation
Indices: 60663752--60663777 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
60663742 ATGCTCGGTC
60663752 GAATTTGAGCCTT
1 GAATTTGAGCCTT
60663765 GAATTTGAGCCTT
1 GAATTTGAGCCTT
60663778 TAACTCTACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.38
Consensus pattern (13 bp):
GAATTTGAGCCTT
Found at i:60666635 original size:33 final size:33
Alignment explanation
Indices: 60666598--60666663 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
60666588 TGCAGTAACG
* **
60666598 GTCTGGGCCTGAGCCCTATTTAGTAACAGTACA
1 GTCTGGACCTGAGCCCTATACAGTAACAGTACA
* *
60666631 GTCTGGACCTTAGCCCTATACAGTAATAGTACA
1 GTCTGGACCTGAGCCCTATACAGTAACAGTACA
60666664 ATCTCTGCCT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (33 bp):
GTCTGGACCTGAGCCCTATACAGTAACAGTACA
Found at i:60675287 original size:15 final size:15
Alignment explanation
Indices: 60675267--60675300 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
60675257 ATTTCAACAA
60675267 TAATGGGTTAAAAGT
1 TAATGGGTTAAAAGT
*
60675282 TAATGGGTTAAAGGT
1 TAATGGGTTAAAAGT
60675297 TAAT
1 TAAT
60675301 ATTAAGGGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.26, T:0.35
Consensus pattern (15 bp):
TAATGGGTTAAAAGT
Found at i:60686170 original size:48 final size:48
Alignment explanation
Indices: 60685934--60686161 Score: 420
Period size: 48 Copynumber: 4.8 Consensus size: 48
60685924 NNNNNATGTA
60685934 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
60685982 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
60686030 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
* * *
60686078 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGCGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
*
60686126 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
60686162 GTAGGCGATG
Statistics
Matches: 176, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 176 1.00
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
Found at i:60686362 original size:37 final size:37
Alignment explanation
Indices: 60686311--60686456 Score: 202
Period size: 37 Copynumber: 3.9 Consensus size: 37
60686301 GGAAATATAT
* *
60686311 TCCGGGTAAGACCCGGTGACTATGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*** *
60686348 TCCGGGTCTTACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
60686385 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* ** *
60686422 TCCGGGTAAGACCCGATAACTTTGTGTAGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
60686457 CGTCTGAGCT
Statistics
Matches: 95, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 95 1.00
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.29
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:60686972 original size:263 final size:263
Alignment explanation
Indices: 60686505--60686997 Score: 950
Period size: 263 Copynumber: 1.9 Consensus size: 263
60686495 GTTAAAGCTA
60686505 TAAGACTTCGTAATAAGAATTGCTTATAAATATATTCTATGCGAAAGGTTAAACAAGTATGTACT
1 TAAGACTTCGTAATAAGAATTGCTTATAAATATATTCTATGCGAAAGGTTAAACAAGTATGTACT
*
60686570 CCAAGTTTATATGTGAGCTTTATTTGAACTAAATCATAAGGTAGTTATGTGATGCATACGAGAGC
66 CCAAGTTTATATGTGAGCTTGATTTGAACTAAATCATAAGGTAGTTATGTGATGCATACGAGAGC
*
60686635 AATCTATGAGACTATTCCTATGATTATGTGACATCGGATCAGTGTGAGAGGTTATGTGAAATTAT
131 AATCTATGAGACTATTCCTATGATTATGTGACATCGGATCAGTGTGAGAGGTTATGTGAAATCAT
60686700 ACAATATATCTATGTCACATGAGCTCACTTTTATGACCCGATAACTTCGTGTGGAGATTATGTCC
196 ACAATATATCTATGTCACATGAGCTCACTTTTATGACCCGATAACTTCGTGTGGAGATTATGTCC
60686765 GGG
261 GGG
60686768 TAAGACTTCGTAATAAGAATTGCTTATAAATATATTCTATGCGAAAGGTTAAACAAGTATGTACT
1 TAAGACTTCGTAATAAGAATTGCTTATAAATATATTCTATGCGAAAGGTTAAACAAGTATGTACT
*
60686833 CCAAGTTTATATGTGAGCTTGATTTGCACTAAATCATAAGGTAGTTATGTGATGCATACGAGAGC
66 CCAAGTTTATATGTGAGCTTGATTTGAACTAAATCATAAGGTAGTTATGTGATGCATACGAGAGC
60686898 AATCTATGAGACTATTCCTATGATTATGTGACATCGGATCAGTGTGAGAGGTTATGTGAAATCAT
131 AATCTATGAGACTATTCCTATGATTATGTGACATCGGATCAGTGTGAGAGGTTATGTGAAATCAT
*
60686963 ACGATATATCTATGTCACATGAGCTCACTTTTATG
196 ACAATATATCTATGTCACATGAGCTCACTTTTATG
60686998 TGAAAGTTTA
Statistics
Matches: 226, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
263 226 1.00
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.34
Consensus pattern (263 bp):
TAAGACTTCGTAATAAGAATTGCTTATAAATATATTCTATGCGAAAGGTTAAACAAGTATGTACT
CCAAGTTTATATGTGAGCTTGATTTGAACTAAATCATAAGGTAGTTATGTGATGCATACGAGAGC
AATCTATGAGACTATTCCTATGATTATGTGACATCGGATCAGTGTGAGAGGTTATGTGAAATCAT
ACAATATATCTATGTCACATGAGCTCACTTTTATGACCCGATAACTTCGTGTGGAGATTATGTCC
GGG
Found at i:60687786 original size:12 final size:12
Alignment explanation
Indices: 60687769--60687793 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
60687759 ATGTAAGTGA
60687769 TCTTGATGATTT
1 TCTTGATGATTT
60687781 TCTTGATGATTT
1 TCTTGATGATTT
60687793 T
1 T
60687794 TACATTGTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:60688801 original size:49 final size:46
Alignment explanation
Indices: 60688511--60688829 Score: 238
Period size: 47 Copynumber: 6.8 Consensus size: 46
60688501 ATTACTTATG
* * * *
60688511 TGCCAGTGTAAGACATGTCTGGGACATGCATTGGACAC-ATTATGA
1 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGA
* * *
60688556 GTGCCAGTGTAAGACCATCTCTGGGACATGGCATCGGCGTAGA-GATGA
1 -TGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATGATGA
* * *
60688604 GTGCCAGCGTAAGATATGTCTGGGACATGCATCGGCCTCGACGATGA
1 -TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGA
* * * *
60688651 TAGCTAGTGTAAGACGTGTCTGGGACATGCATCGG-CT-GAAAGTTG-
1 T-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCG-ATGATGA
* * * **
60688696 TGCTAGTGTAAGACATGTCCGGGACATGCATCCG-AACGTAT-ATACGA
1 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCG-ATGAT--GA
* ** *
60688743 GAGATAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATGATGA
1 -TGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATGATGA
*
60688792 TAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 T-GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
60688830 AACTTATCCC
Statistics
Matches: 221, Mismatches: 36, Indels: 29
0.77 0.13 0.10
Matches are distributed among these distances:
44 31 0.14
45 4 0.02
46 32 0.14
47 59 0.27
48 34 0.15
49 49 0.22
50 8 0.04
51 4 0.02
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGA
Found at i:60691688 original size:834 final size:829
Alignment explanation
Indices: 60690160--60692657 Score: 3425
Period size: 833 Copynumber: 3.0 Consensus size: 829
60690150 GTTACACTTG
* * * * *
60690160 ATGTTCTTTACTCATCAGGGCTTCCATTAATCTTTCTTGTGATTTCATTCAATTTTCATCTTTAT
1 ATGTTCTTTACTCGTCAGGCCTTCCATTAATCTTTCTTATGATTTCATTCAATTTTGATCTTTTT
* * *** *
60690225 GCTTCAAATCTGTCCAACAATT-TTTTCACTTAATTTGCAATCCTGACCCCTTTGGATTTTGTAC
66 GCTTCAAATCTGTCAAACATTTGTTTTCACTTAATTTGCGGCCCTGACCCCTTTGGATTTTATAC
*
60690289 AAAATAATGA-TTCCTTAACATACTTGGTCTCCTCCAAGAACCCTAATTTGGATTCAATTTCCTT
131 AAAAT-ATGACTTCCTTAACCTACTTGGTCTCCTCCAAGAACCCTAATTTGGATTCAATTTCCTT
* * * * * *
60690353 GTTCTTTTATAATTTTTTTTGTATTGTTTCCCTTTTAATTCAAACTTGGATTGTTTGAGTTTTGC
195 GTTCTTTTATAAGTTTATTTGTGTTGTTGCCCTTTTAATTCTAACTTGGATTGTTTGAGTTTTGG
*
60690418 ATGGGGTTGAACTCCATGATTCCTTAATCTTGAGAACGCAACAATCTAATGCTCCTTAGGACATC
260 GTGGGGTTGAACTCCATGATTCCTTAATCTTGAGAACGCAACAATCTAATGCTCCTTAGGACATC
* * *
60690483 TCCACACCACTTTAGTCATTTCCCAAATTTCTCCTCTCTTTCCTTGAATTTGTAGTTCGATTCTT
325 TTCACACCACTTTAGTCATTTCCCAACTTTCTTCTCTCTTTCCTTGAATTTGTAGTTCGATTCTT
** *
60690548 GTTTGTTTGTTTCTAATCTTTCGTTTCATTACTTCCATATCAAGAATCAACAAGAAAAGACGTTC
390 GTTTGTTTGTTTCTAATCTTTTATTTCTTTACTTCCATATCAAGAATCAACAAGAAAAGACGTTC
* * * *
60690613 TCCCCTTCTTAATACACCACGAACCATTCAAAAACTAGGAAGTTTATTCTTTTCTTATTGCGTCG
455 TCCCCTTCTTAATACACCAAGAACCATT-AAAAACTAGGAAGTCTCTTCTTTTCTTATTGTGTCG
60690678 ATTGCTTTTATCACAAAACAATTTTATTATGGCTTAAAAATCCATTCTAACAATCTATTTTCTTC
519 ATTGCTTTTATCACAAAACAATTTT-TTATGGCTTAAAAATCCATTCTAACAATCTATTTTCTTC
* ** * * * ** * *
60690743 TTTTGATTTCAGATCTAGATTAAAGCCTTCTTTCAGTTCAAGAATTTTTCTTTCTCATCCAAGAA
583 TCTCAATTTTAGATCTAGTTTAAGGCCTTCTTTTGGTTCAAAAATGTTTCTTTCTCATCCAAGAA
* * * * *
60690808 ACCATATCTCAATCGTTCTTGCACTCCTCTTTTCTAACCTCTCTCCTTCTATGTTGTTTGGTTTA
648 ACCATATCCCAATCGTTCTTGCACTTCTCTTTGCCAACCTCTCTCCTTCCATGTTGTTTGGTTTA
* *
60690873 CTTTCTCATTTTTTTAATCAGAAATCTAATTTGTTTTATTTCTTTTGTTTAGATCTCGATTCGAC
713 CTTTTTCATTTTTTTAA-CAGAAATCTAATTTGTTTTATTTCTTTTGTTTAGATCTTGATTCGAC
* *
60690938 ATCATCTTTTAATCCAAGAATGCTTCAAGTCATCTTAATATACTTGATTCTTC
777 ATCATCTTTTCATCCAAGAATGCTTCAAATCATCTTAATATACTTGATTCTTC
* * * * *
60690991 ATGTTCTTTACTGGTCAAGCCTTCCATTAATCATTCTTATAATTTCATTCTATTTTGATCTTTTT
1 ATGTTCTTTACTCGTCAGGCCTTCCATTAATCTTTCTTATGATTTCATTCAATTTTGATCTTTTT
* * * *
60691056 GCTTCAAATCCGTCAAACAGTTTGTTTTCACTTAATTTGTGGCCCTAACCCTTTTGGATATTT-T
66 GCTTCAAATCTGTCAAACA-TTTGTTTTCACTTAATTTGCGGCCCTGACCCCTTTGGAT-TTTAT
*
60691120 ACAAAATA-GCACTTCCTTAACCTAAC-TGGTCTCATCCAAGAACCCTAATTTGGATTCAATTTC
129 ACAAAATATG-ACTTCCTTAACCT-ACTTGGTCTCCTCCAAGAACCCTAATTTGGATTCAATTTC
* *
60691183 CTTGTTCTTTTATAAGTTTATTTGTGTTGATGCCCTTTTAATTCTAACTTAGATTGTTT-ATGTT
192 CTTGTTCTTTTATAAGTTTATTTGTGTTGTTGCCCTTTTAATTCTAACTTGGATTGTTTGA-GTT
* * *
60691247 TTGGGTGGGGTTGAACTCCATGATTCCTTAGTCTTGAGAATGCAACAATCTAGTGCTCCTTAGGA
256 TTGGGTGGGGTTGAACTCCATGATTCCTTAATCTTGAGAACGCAACAATCTAATGCTCCTTA-G-
* * * * *
60691312 GACATCTTCACACCACTTTATTCATTTCCCAACTTTCTTTTCTCTATCCTTAAATTTGTAGTTTG
319 GACATCTTCACACCACTTTAGTCATTTCCCAACTTTCTTCTCTCTTTCCTTGAATTTGTAGTTCG
* * * **
60691377 ATTCTTGTCTATTTGTTTTTAATCTTTTATTTCTTTACTTCTGTATCAAGAATCAACAAGAAAAG
384 ATTCTTGTTTGTTTGTTTCTAATCTTTTATTTCTTTACTTCCATATCAAGAATCAACAAGAAAAG
* * *
60691442 ATGTTCTCCCCTTCTTAATTCACCAAGAACCATTGAAAACTAGGAAGTCTCTTCTTTTCTTATTG
449 ACGTTCTCCCCTTCTTAATACACCAAGAACCATTAAAAACTAGGAAGTCTCTTCTTTTCTTATTG
* * *
60691507 TGACGATTGCTTTTATCATAAAACAATTTTGTTATGGCTTAAAAATCCATTCTAACAATCTGTTT
514 TGTCGATTGCTTTTATCACAAAACAATTTT-TTATGGCTTAAAAATCCATTCTAACAATCTATTT
* *
60691572 TCTTCTGTCAATTTTAGATCTAGTTTTAGGCCTTCTTTTGGTTCAAAAATGTTTCTTTCTCATCC
578 TCTTCTCTCAATTTTAGATCTAGTTTAAGGCCTTCTTTTGGTTCAAAAATGTTTCTTTCTCATCC
* * * *
60691637 AAGAAACCATATCCCAGTGGTTCTTGCACTTCTCTTTGCCCACCTCTCTCCTTCCATGTTGGTTG
643 AAGAAACCATATCCCAATCGTTCTTGCACTTCTCTTTGCCAACCTCTCTCCTTCCATGTTGTTTG
* *
60691702 GTGTACTTTTTCATTCTTTTAACCAGAAATCTAATTTGTTTTATTTCTTTTGTTTAGATCTTGAT
708 GTTTACTTTTTCATTTTTTTAA-CAGAAATCTAATTTGTTTTATTTCTTTTGTTTAGATCTTGAT
* * *
60691767 TCGACATCATATTTTCATCCAAGAATGCTTTAAATAATCTTAATATACTTGATTCTTC
772 TCGACATCATCTTTTCATCCAAGAATGCTTCAAATCATCTTAATATACTTGATTCTTC
* * * *
60691825 ATGTTCTTTACTCGCCAGGCCTTCCTTTCATCTTTCTTCTGATTTCATTCAATTTTGATCTTTTA
1 ATGTTCTTTACTCGTCAGGCCTTCCATTAATCTTTCTTATGATTTCATTCAATTTTGATCTTTT-
*
60691890 TGCTTCAAATCTGTCTAACCATTTGTTTTCACTTAATTTGCGGCCCTGACCCCTTTGGATTTTAT
65 TGCTTCAAATCTGTC-AAACATTTGTTTTCACTTAATTTGCGGCCCTGACCCCTTTGGATTTTAT
* * *
60691955 ACAGAATTATG-CTTCTTTAACCTACTTGGTCTCCTCCAAGAACCCTAATTTGGATTTAATTTCC
129 ACA-AAATATGACTTCCTTAACCTACTTGGTCTCCTCCAAGAACCCTAATTTGGATTCAATTTCC
* *
60692019 TAGTTCTTTTATAAGTTTATTTGTGTTGTTGCCCTTTTAATTCTAACTTGGATTGTTTGAGTTCT
193 TTGTTCTTTTATAAGTTTATTTGTGTTGTTGCCCTTTTAATTCTAACTTGGATTGTTTGAGTTTT
* * *
60692084 AGGTGGGGTTCAACTTCATGATTCCTTAATCTTGAGAACGCAACAATCTAATGCTCCTTAGGACA
258 GGGTGGGGTTGAACTCCATGATTCCTTAATCTTGAGAACGCAACAATCTAATGCTCCTTAGGACA
* * *
60692149 TCTTCACGCCACTTTAGTCTTTTCCTAACTTTCTTCTCTCTTTCCTTGAATTTGTAGTTCGATTC
323 TCTTCACACCACTTTAGTCATTTCCCAACTTTCTTCTCTCTTTCCTTGAATTTGTAGTTCGATTC
* * *
60692214 TTGTTTGTTTATTTCTAATCTTTTATTTCTTTACTTCCATATCAGGAATCAACAAGAAAAGACAT
388 TTGTTTGTTTGTTTCTAATCTTTTATTTCTTTACTTCCATATCAAGAATCAACAAGAAAAGACGT
* * *
60692279 TCCCCCCTTCTTAATACACAAAGAACCATTAAAAACTAGGAAGTCTCTTCTTTTCTTATAGTGTC
453 TCTCCCCTTCTTAATACACCAAGAACCATTAAAAACTAGGAAGTCTCTTCTTTTCTTATTGTGTC
* * * * * ** * *
60692344 AATTACTTTTACCACAAAATAATTATTTTCTTACTTAAAAATCCATTCTGATAATCTATTTTCTT
518 GATTGCTTTTATCACAAAACAATT-TTTTATGGCTTAAAAATCCATTCTAACAATCTATTTTCTT
* * ** * * *
60692409 ATCTCAATTTTAGAACTAGTTGGAGGCCTTCTTTTGGTTCAAGAATTGTTTC-TTCTCAGCCACG
582 CTCTCAATTTTAGATCTAGTTTAAGGCCTTCTTTTGGTTCAA-AAATGTTTCTTTCTCATCCAAG
* * * * * * * * * *
60692473 AAACCATTTCCCACTCTTTCTTGGACTTCTCTTTGGCTA--TCTCACTTTCCGTGCTGTTTGGTT
646 AAACCATATCCCAATCGTTCTTGCACTTCTCTTTGCCAACCTCTCTCCTTCCATGTTGTTTGGTT
* * * * * * *
60692536 TTCTTTTTC-TTTCTTTTAACAAAAAATCTAATTGGTTTTATTTATTTTGTTTAGATATTTATTT
711 TACTTTTTCATTT-TTTTAAC-AGAAATCTAATTTGTTTTATTTCTTTTGTTTAGATCTTGATTC
*
60692600 GACATCATCTTTTCATCCAAGAATGGTTCAAATCATCTTAATATACTTGATTCTTC
774 GACATCATCTTTTCATCCAAGAATGCTTCAAATCATCTTAATATACTTGATTCTTC
60692656 AT
1 AT
60692658 CTAGAGCCCA
Statistics
Matches: 1462, Mismatches: 185, Indels: 40
0.87 0.11 0.02
Matches are distributed among these distances:
830 3 0.00
831 196 0.13
832 5 0.00
833 501 0.34
834 388 0.27
835 359 0.25
836 9 0.01
837 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.11, T:0.44
Consensus pattern (829 bp):
ATGTTCTTTACTCGTCAGGCCTTCCATTAATCTTTCTTATGATTTCATTCAATTTTGATCTTTTT
GCTTCAAATCTGTCAAACATTTGTTTTCACTTAATTTGCGGCCCTGACCCCTTTGGATTTTATAC
AAAATATGACTTCCTTAACCTACTTGGTCTCCTCCAAGAACCCTAATTTGGATTCAATTTCCTTG
TTCTTTTATAAGTTTATTTGTGTTGTTGCCCTTTTAATTCTAACTTGGATTGTTTGAGTTTTGGG
TGGGGTTGAACTCCATGATTCCTTAATCTTGAGAACGCAACAATCTAATGCTCCTTAGGACATCT
TCACACCACTTTAGTCATTTCCCAACTTTCTTCTCTCTTTCCTTGAATTTGTAGTTCGATTCTTG
TTTGTTTGTTTCTAATCTTTTATTTCTTTACTTCCATATCAAGAATCAACAAGAAAAGACGTTCT
CCCCTTCTTAATACACCAAGAACCATTAAAAACTAGGAAGTCTCTTCTTTTCTTATTGTGTCGAT
TGCTTTTATCACAAAACAATTTTTTATGGCTTAAAAATCCATTCTAACAATCTATTTTCTTCTCT
CAATTTTAGATCTAGTTTAAGGCCTTCTTTTGGTTCAAAAATGTTTCTTTCTCATCCAAGAAACC
ATATCCCAATCGTTCTTGCACTTCTCTTTGCCAACCTCTCTCCTTCCATGTTGTTTGGTTTACTT
TTTCATTTTTTTAACAGAAATCTAATTTGTTTTATTTCTTTTGTTTAGATCTTGATTCGACATCA
TCTTTTCATCCAAGAATGCTTCAAATCATCTTAATATACTTGATTCTTC
Found at i:60714590 original size:27 final size:27
Alignment explanation
Indices: 60714559--60714736 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
60714549 TAAATTGTAC
60714559 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
60714586 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60714612 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
60714640 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
60714668 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60714695 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60714722 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60714737 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60714673 original size:82 final size:81
Alignment explanation
Indices: 60714560--60714715 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
60714550 AAATTGTACA
* *
60714560 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
60714624 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
60714641 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
60714706 TGCGAGTTGA
65 TGCGAATTGA
60714716 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:60714727 original size:82 final size:81
Alignment explanation
Indices: 60714556--60714736 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
60714546 GATTAAATTG
* *
60714556 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
60714621 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
60714637 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
60714701 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
60714719 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
60714737 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:60718579 original size:8 final size:8
Alignment explanation
Indices: 60718566--60718591 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
60718556 ACTTATCAGT
60718566 TTTTATTA
1 TTTTATTA
60718574 TTTTATTA
1 TTTTATTA
60718582 TTTTATTA
1 TTTTATTA
60718590 TT
1 TT
60718592 CCAAATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTATTA
Found at i:60721724 original size:12 final size:12
Alignment explanation
Indices: 60721704--60721733 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
60721694 TCAAGCAGTT
*
60721704 ACACGGCCTAGC
1 ACACAGCCTAGC
60721716 ACACAGCCTAGC
1 ACACAGCCTAGC
60721728 ACACAG
1 ACACAG
60721734 GCGTTTGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.40, G:0.20, T:0.07
Consensus pattern (12 bp):
ACACAGCCTAGC
Found at i:60722625 original size:23 final size:22
Alignment explanation
Indices: 60722551--60722626 Score: 82
Period size: 23 Copynumber: 3.4 Consensus size: 22
60722541 AGAGCAGCAA
*
60722551 GTTATT-TGTGGAGCTTTTGTG
1 GTTATTCTGTGGAGCCTTTGTG
* *
60722572 GCTTATTATGTGGAGCCTTTATG
1 G-TTATTCTGTGGAGCCTTTGTG
*
60722595 GTGTATTCTGTAGAGCCTTTGTG
1 GT-TATTCTGTGGAGCCTTTGTG
60722618 GTATATTCT
1 GT-TATTCT
60722627 ATAACACCTA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
21 1 0.02
22 6 0.13
23 39 0.85
ACGTcount: A:0.14, C:0.11, G:0.28, T:0.47
Consensus pattern (22 bp):
GTTATTCTGTGGAGCCTTTGTG
Found at i:60724206 original size:21 final size:21
Alignment explanation
Indices: 60724157--60724198 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
60724147 ATGGGTGAAA
* *
60724157 AAATTTCTACTTGACAAATCT
1 AAATTTTTAGTTGACAAATCT
*
60724178 AAATTTTTAGTTGATAAATCT
1 AAATTTTTAGTTGACAAATCT
60724199 TATTTTTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (21 bp):
AAATTTTTAGTTGACAAATCT
Found at i:60726616 original size:40 final size:40
Alignment explanation
Indices: 60726554--60726811 Score: 439
Period size: 40 Copynumber: 6.5 Consensus size: 40
60726544 AAGCCAAGTA
* * * *
60726554 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
60726593 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60726633 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60726673 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60726713 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60726753 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60726793 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
60726812 TTATCATCCA
Statistics
Matches: 210, Mismatches: 7, Indels: 3
0.95 0.03 0.01
Matches are distributed among these distances:
39 12 0.06
40 198 0.94
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:60728554 original size:50 final size:50
Alignment explanation
Indices: 60728378--60728531 Score: 285
Period size: 50 Copynumber: 3.1 Consensus size: 50
60728368 TTATATGACT
60728378 AATACTACCTTAATAACAAGCCAATG-CTTTGGCTAAATCATAATATTAC
1 AATACTACCTTAATAACAAGCCAATGCCTTTGGCTAAATCATAATATTAC
*
60728427 AATACTACCTTAATAACAAGCCAATGCCTTTCGCTAAATCATAATATTAC
1 AATACTACCTTAATAACAAGCCAATGCCTTTGGCTAAATCATAATATTAC
60728477 AATACTACCTTAATAACAAGCCAATGCCTTTGGCTAAATCATAATATTAC
1 AATACTACCTTAATAACAAGCCAATGCCTTTGGCTAAATCATAATATTAC
60728527 -ATACT
1 AATACT
60728532 CACATTAAAA
Statistics
Matches: 102, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
49 31 0.30
50 71 0.70
ACGTcount: A:0.40, C:0.22, G:0.07, T:0.31
Consensus pattern (50 bp):
AATACTACCTTAATAACAAGCCAATGCCTTTGGCTAAATCATAATATTAC
Found at i:60730356 original size:20 final size:18
Alignment explanation
Indices: 60730322--60730358 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
60730312 GCAACTCATA
60730322 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
60730340 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
60730359 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:60731132 original size:25 final size:25
Alignment explanation
Indices: 60731086--60731135 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
60731076 TATCGTTTTT
* *
60731086 AAAAAAGGTATCGATTATTTTTTAG
1 AAAAAAGGTATCGAATAATTTTTAG
60731111 AAAAAATGGTATC-AATAATTTTTAG
1 AAAAAA-GGTATCGAATAATTTTTAG
60731136 GATTTTTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.44, C:0.04, G:0.14, T:0.38
Consensus pattern (25 bp):
AAAAAAGGTATCGAATAATTTTTAG
Found at i:60731331 original size:20 final size:21
Alignment explanation
Indices: 60731306--60731359 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
60731296 TTGAATCATT
*
60731306 TTAAAATCATTTTGACTTG-G
1 TTAAAATCATTTTAACTTGAG
*
60731326 TTAAAATCATTTTAACTTGATT
1 TTAAAATCATTTTAACTTGA-G
60731348 TTAAAATCATTT
1 TTAAAATCATTT
60731360 CAATTTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 18 0.60
22 12 0.40
ACGTcount: A:0.35, C:0.09, G:0.07, T:0.48
Consensus pattern (21 bp):
TTAAAATCATTTTAACTTGAG
Found at i:60731349 original size:31 final size:30
Alignment explanation
Indices: 60731276--60731351 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
60731266 TTTTGATATG
*
60731276 TTAAAATGATTTTAACTTGATTGAATCATT
1 TTAAAATGATTTTAACTTGATTAAATCATT
* * *
60731306 TTAAAATCATTTTGACTTGGTTAAAATCATT
1 TTAAAATGATTTTAACTTGATT-AAATCATT
**
60731337 TTAACTTGATTTTAA
1 TTAAAATGATTTTAA
60731352 AATCATTTCA
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
30 19 0.51
31 18 0.49
ACGTcount: A:0.36, C:0.08, G:0.09, T:0.47
Consensus pattern (30 bp):
TTAAAATGATTTTAACTTGATTAAATCATT
Found at i:60731688 original size:14 final size:14
Alignment explanation
Indices: 60731647--60731698 Score: 52
Period size: 15 Copynumber: 3.6 Consensus size: 14
60731637 TTATCCTAGA
60731647 AAATTTTTAATTTTTT
1 AAATTTTT--TTTTTT
* *
60731663 -AACTTTATTTTTT
1 AAATTTTTTTTTTT
60731676 AAATTTTTTTTTTT
1 AAATTTTTTTTTTT
60731690 GAAATTTTT
1 -AAATTTTT
60731699 ATAATTTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
13 6 0.20
14 11 0.37
15 13 0.43
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (14 bp):
AAATTTTTTTTTTT
Found at i:60734274 original size:25 final size:21
Alignment explanation
Indices: 60734228--60734268 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
60734218 AATCACATGA
*
60734228 TACAAAAACAACCTAATTATT
1 TACAAAAAAAACCTAATTATT
60734249 TCACAAAAAAAACCTAATTA
1 T-ACAAAAAAAACCTAATTA
60734269 AAATTTACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 1 0.06
22 17 0.94
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (21 bp):
TACAAAAAAAACCTAATTATT
Found at i:60740231 original size:3 final size:3
Alignment explanation
Indices: 60740223--60740260 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
60740213 GATTTCTCTT
60740223 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
60740261 GTCTTTTTGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:60747544 original size:28 final size:27
Alignment explanation
Indices: 60747512--60747607 Score: 86
Period size: 28 Copynumber: 3.3 Consensus size: 27
60747502 AATCAGAGCT
*
60747512 ATCTGGGCCTTAGCCCATATCAATATTA
1 ATCTGGGCC-TAGCCCATATCAGTATTA
*
60747540 ATCTGGGCCATAGCCTCTTA-CAGTATTAGA
1 ATCTGGGCC-TAGCC-CATATCAGTATT--A
*
60747570 GTATACTGGGCCTAGCCCATATCAGTATCA
1 --AT-CTGGGCCTAGCCCATATCAGTATTA
60747600 ATCTGGGC
1 ATCTGGGC
60747608 GGTAGCCCTA
Statistics
Matches: 56, Mismatches: 5, Indels: 15
0.74 0.07 0.20
Matches are distributed among these distances:
27 6 0.11
28 22 0.39
29 3 0.05
30 2 0.04
31 3 0.05
32 13 0.23
33 7 0.12
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (27 bp):
ATCTGGGCCTAGCCCATATCAGTATTA
Found at i:60747589 original size:60 final size:61
Alignment explanation
Indices: 60747506--60747654 Score: 171
Period size: 60 Copynumber: 2.5 Consensus size: 61
60747496 TTCAGAAATC
* * *
60747506 AGAGCTAT-CTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAG-CCTCTTAC-AGTATT
1 AGAG-TATACTGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGT-TG
* **
60747567 AGAGTATACTGGGCCTAGCCCATATCAGTATCAATCTGGGCGGTAGCCCTATTACAAGTTG
1 AGAGTATACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTTG
* *
60747628 AGA-TATATTGGGCCTTGCCCATATCAA
1 AGAGTATACTGGGCCTAGCCCATATCAA
60747655 CACAGTTGGG
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
60 51 0.67
61 22 0.29
62 3 0.04
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (61 bp):
AGAGTATACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTTG
Found at i:60747687 original size:19 final size:20
Alignment explanation
Indices: 60747644--60747689 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
60747634 ATTGGGCCTT
*
60747644 GCCCATATCAACACAGTTGG
1 GCCCATATCAACACAATTGG
* *
60747664 GCCCATTTCAATACAATT-G
1 GCCCATATCAACACAATTGG
60747683 GCCCATA
1 GCCCATA
60747690 ATAAAACAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.24
Consensus pattern (20 bp):
GCCCATATCAACACAATTGG
Found at i:60752162 original size:15 final size:15
Alignment explanation
Indices: 60752139--60752176 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
60752129 TCAAATCTTC
*
60752139 TTTTTTTCT-TTTCT
1 TTTTTTTCTCTTCCT
60752153 TTTCTTTTCTCTTCCT
1 TTT-TTTTCTCTTCCT
60752169 TTTTTTTC
1 TTTTTTTC
60752177 ACATTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 3 0.14
15 11 0.52
16 7 0.33
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTTTTCTCTTCCT
Found at i:60760265 original size:37 final size:37
Alignment explanation
Indices: 60760215--60760293 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
60760205 TTATTACGAA
* * *
60760215 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
60760252 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
60760289 GTCTT
1 GTCTT
60760294 TAGAGCTCAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:60760539 original size:49 final size:49
Alignment explanation
Indices: 60760412--60760757 Score: 542
Period size: 49 Copynumber: 7.2 Consensus size: 49
60760402 CCCTTCGGGA
* * * * *
60760412 CTTATCACAT-T-TATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
60760459 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60760506 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
60760555 CTTATCAC--GCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60760602 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60760651 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60760700 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60760749 CTTATCACA
1 CTTATCACA
60760758 ATTTAGAATT
Statistics
Matches: 278, Mismatches: 15, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 87 0.31
49 190 0.68
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:60760693 original size:98 final size:96
Alignment explanation
Indices: 60760412--60760757 Score: 561
Period size: 96 Copynumber: 3.6 Consensus size: 96
60760402 CCCTTCGGGA
* * * * * * *
60760412 CTTATCACAT-T-TATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
60760475 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAAGC
**
60760506 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGCATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
60760571 ACTTTCACATTCATCACATCGGCCATTAAGC
66 ACTTTCACATTCATCACATCGGCCATTAAGC
*
60760602 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
60760667 ACACTTTCACATTCATCACATCGGCCATTAAGC
64 ACACTTTCACATTCATCACATCGGCCATTAAGC
60760700 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
60760758 ATTTAGAATT
Statistics
Matches: 234, Mismatches: 14, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
94 10 0.04
95 1 0.00
96 130 0.56
98 93 0.40
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:60762443 original size:39 final size:39
Alignment explanation
Indices: 60762389--60762466 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
60762379 CTCTCCCTAA
*
60762389 ATCCAAATTCGGCATATTGAACAACCCAAATGCTAACCT
1 ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
*
60762428 ATCCAAGTTCGGCATATTCAACAACCCAAATGCTAACCT
1 ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
60762467 CAACGTTTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.37, C:0.29, G:0.10, T:0.23
Consensus pattern (39 bp):
ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
Found at i:60765946 original size:58 final size:58
Alignment explanation
Indices: 60765879--60766054 Score: 316
Period size: 58 Copynumber: 3.0 Consensus size: 58
60765869 AAGGGCAAAG
60765879 AGAGCTTACCCTCAAGCTTTTGACCAATACGTTTGATAATGTCATTGAATAAGATTAA
1 AGAGCTTACCCTCAAGCTTTTGACCAATACGTTTGATAATGTCATTGAATAAGATTAA
* * *
60765937 AGAGCTTACCCTCAAGCTTTTGACCAATACGTTTAATAATATCATTAAATAAGATTAA
1 AGAGCTTACCCTCAAGCTTTTGACCAATACGTTTGATAATGTCATTGAATAAGATTAA
*
60765995 AGAGCTTACCCTTAAGCTTTTGACCAATACGTTTGATAATGTCATTGAATAAGATTAA
1 AGAGCTTACCCTCAAGCTTTTGACCAATACGTTTGATAATGTCATTGAATAAGATTAA
60766053 AG
1 AG
60766055 CCAAATCCAG
Statistics
Matches: 111, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
58 111 1.00
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.33
Consensus pattern (58 bp):
AGAGCTTACCCTCAAGCTTTTGACCAATACGTTTGATAATGTCATTGAATAAGATTAA
Found at i:60767711 original size:15 final size:15
Alignment explanation
Indices: 60767691--60767720 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
60767681 CTCCTTTATG
60767691 GAAATGATCTCTAAT
1 GAAATGATCTCTAAT
*
60767706 GAAATGATGTCTAAT
1 GAAATGATCTCTAAT
60767721 CTCAATATGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (15 bp):
GAAATGATCTCTAAT
Found at i:60770109 original size:115 final size:115
Alignment explanation
Indices: 60769964--60770196 Score: 432
Period size: 115 Copynumber: 2.0 Consensus size: 115
60769954 GGACCAAATT
60769964 AATCTATGTGAATTAGTTGGAGAACTCTACTAGTTGATACATCATTAATAGGTTAAAAAAAAACT
1 AATCTATGTGAATTAGTTGGAGAACTCTACTAGTTGATACATCATTAATAGGTTAAAAAAAAACT
*
60770029 -TTTTGATGTTTACCCTTAAGACATGCATCACAAACTTTATCTAATTCAAA
66 CTTTT-ATGTTTACCCTTAAGAAATGCATCACAAACTTTATCTAATTCAAA
*
60770079 AATCTATGTGAATTAGTTGGAGAACTCTACTAGTTGATACATCATTAATAGGTTAAAAAGAAACT
1 AATCTATGTGAATTAGTTGGAGAACTCTACTAGTTGATACATCATTAATAGGTTAAAAAAAAACT
60770144 CTTTTATGTTTACCCTTAAGAAATGCATCACAAACTTTATCTAATTCAAA
66 CTTTTATGTTTACCCTTAAGAAATGCATCACAAACTTTATCTAATTCAAA
60770194 AAT
1 AAT
60770197 ATGCTCACTA
Statistics
Matches: 115, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
115 111 0.97
116 4 0.03
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.35
Consensus pattern (115 bp):
AATCTATGTGAATTAGTTGGAGAACTCTACTAGTTGATACATCATTAATAGGTTAAAAAAAAACT
CTTTTATGTTTACCCTTAAGAAATGCATCACAAACTTTATCTAATTCAAA
Found at i:60771981 original size:66 final size:67
Alignment explanation
Indices: 60771852--60771981 Score: 174
Period size: 66 Copynumber: 1.9 Consensus size: 67
60771842 GGGATGTATC
*
60771852 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
60771917 AGGACA
62 AGGACA
* *
60771923 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
60771982 TTCACCATGT
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
66 24 0.44
67 9 0.16
68 1 0.02
71 21 0.38
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Done.