Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 179 of 235
Found at i:60782114 original size:66 final size:67
Alignment explanation
Indices: 60781985--60782114 Score: 174
Period size: 66 Copynumber: 1.9 Consensus size: 67
60781975 GGGATGTATC
*
60781985 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
60782050 AGGACA
62 AGGACA
* *
60782056 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
60782115 TTCACCATGT
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
66 24 0.44
67 9 0.16
68 1 0.02
71 21 0.38
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:60793136 original size:12 final size:12
Alignment explanation
Indices: 60793114--60793138 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
60793104 TTTGAAAAAC
60793114 AAAAATAAAATG
1 AAAAATAAAATG
60793126 AAAAATAAAATG
1 AAAAATAAAATG
60793138 A
1 A
60793139 GATTGAGACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAAATAAAATG
Found at i:60793205 original size:30 final size:30
Alignment explanation
Indices: 60793140--60793206 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
60793130 ATAAAATGAG
* *
60793140 ATTGAGACTGAAAAAGAAATTGAAAAAGAT
1 ATTGAGACTGAAAAAGAAATGGAAAAAGAA
* *
60793170 TTTGAGAGTGAAAAA-AAAGTGGAAAAAGAA
1 ATTGAGACTGAAAAAGAAA-TGGAAAAAGAA
60793200 ATTGAGA
1 ATTGAGA
60793207 TAAAAGAAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 3 0.10
30 28 0.90
ACGTcount: A:0.55, C:0.01, G:0.24, T:0.19
Consensus pattern (30 bp):
ATTGAGACTGAAAAAGAAATGGAAAAAGAA
Found at i:60798337 original size:34 final size:34
Alignment explanation
Indices: 60798294--60798360 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
60798284 GCATGGTAAG
*
60798294 ATTTTATGACCCATTTTTAGTGATTTTTATGTTA
1 ATTTTATGACCCATTTTTAATGATTTTTATGTTA
*
60798328 ATTTTATGACCCGTTTTTAATGATTTTTATGTT
1 ATTTTATGACCCATTTTTAATGATTTTTATGTT
60798361 TTTGAGCTCG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.22, C:0.09, G:0.12, T:0.57
Consensus pattern (34 bp):
ATTTTATGACCCATTTTTAATGATTTTTATGTTA
Found at i:60800753 original size:17 final size:17
Alignment explanation
Indices: 60800709--60800742 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
60800699 TTTCTTTCAT
60800709 ACGAGCTTACTAAGCTA
1 ACGAGCTTACTAAGCTA
60800726 ACGAGCTTACTAAGCTA
1 ACGAGCTTACTAAGCTA
60800743 TATAGCTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.24
Consensus pattern (17 bp):
ACGAGCTTACTAAGCTA
Found at i:60806268 original size:21 final size:21
Alignment explanation
Indices: 60806242--60806281 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
60806232 GAGGAGAAAG
*
60806242 TGAAAGTAA-TTCGTGATTGCT
1 TGAAAGCAATTTCG-GATTGCT
60806263 TGAAAGCAATTTCGGATTG
1 TGAAAGCAATTTCGGATTG
60806282 ATAGAAATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.35
Consensus pattern (21 bp):
TGAAAGCAATTTCGGATTGCT
Found at i:60812245 original size:26 final size:26
Alignment explanation
Indices: 60812207--60812282 Score: 107
Period size: 26 Copynumber: 2.9 Consensus size: 26
60812197 ACATATTTTC
* *
60812207 TCAAAATTTTACTAGAGGCAAAATCG
1 TCAAAATTTTACTAGGGGTAAAATCG
* *
60812233 TGAAAATTTTACTAGGGGTAAAATTG
1 TCAAAATTTTACTAGGGGTAAAATCG
*
60812259 TCAAAATTTTGCTAGGGGTAAAAT
1 TCAAAATTTTACTAGGGGTAAAAT
60812283 AGGGATAAGA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.39, C:0.09, G:0.20, T:0.32
Consensus pattern (26 bp):
TCAAAATTTTACTAGGGGTAAAATCG
Found at i:60815679 original size:30 final size:30
Alignment explanation
Indices: 60815622--60815680 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
60815612 CCAAAATCAT
* *
60815622 ACTTTTACAAATTTTCATTTTTACCCCTAA
1 ACTTTTACAAATTTGCATATTTACCCCTAA
*
60815652 ACTTTTACATATTTGCA-ATTTAGCCCCTA
1 ACTTTTACAAATTTGCATATTTA-CCCCTA
60815681 GGCACGTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 4 0.16
30 21 0.84
ACGTcount: A:0.29, C:0.24, G:0.03, T:0.44
Consensus pattern (30 bp):
ACTTTTACAAATTTGCATATTTACCCCTAA
Found at i:60818220 original size:15 final size:15
Alignment explanation
Indices: 60818188--60818245 Score: 62
Period size: 15 Copynumber: 3.9 Consensus size: 15
60818178 GAGATGACAT
* *
60818188 GAAAACCAAGAGAAA
1 GAAATCCAAGATAAA
* *
60818203 GAAGTCCAGGATAAA
1 GAAATCCAAGATAAA
60818218 GAAATCCAAGATAAA
1 GAAATCCAAGATAAA
* *
60818233 AAAATCTAAGATA
1 GAAATCCAAGATA
60818246 CAATATCATA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 35 1.00
ACGTcount: A:0.59, C:0.12, G:0.17, T:0.12
Consensus pattern (15 bp):
GAAATCCAAGATAAA
Found at i:60820357 original size:40 final size:39
Alignment explanation
Indices: 60820167--60820350 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
60820157 CGAATGATGT
* * * *
60820167 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
60820207 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
60820247 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
60820285 TTCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
60820326 CCGGGCTATGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
60820351 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
39 34 0.28
40 77 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:60820383 original size:79 final size:79
Alignment explanation
Indices: 60820220--60820373 Score: 188
Period size: 79 Copynumber: 1.9 Consensus size: 79
60820210 GACTAAGATC
* * **
60820220 CGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 CGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAAA
*
60820285 TTCGGGTTAAGTCT
66 TTCCGGTTAAGTCT
* *
60820299 CGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCAAAGGCATTTGAACGAG-TAGCT
1 CGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCAAAGGCATTGGAACGAGTTA-CT
*
60820362 ATA-TCCGGTTAA
63 AAATTCCGGTTAA
60820374 ATTCTGAAGG
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 42 0.66
80 20 0.31
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (79 bp):
CGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAAA
TTCCGGTTAAGTCT
Found at i:60820841 original size:44 final size:44
Alignment explanation
Indices: 60820791--60820877 Score: 165
Period size: 44 Copynumber: 2.0 Consensus size: 44
60820781 TATCAAAGCT
*
60820791 CCTTTTGGTATACTTTTGGTTGAACTTTGAAATGGCATGTATAC
1 CCTTTTGGTACACTTTTGGTTGAACTTTGAAATGGCATGTATAC
60820835 CCTTTTGGTACACTTTTGGTTGAACTTTGAAATGGCATGTATA
1 CCTTTTGGTACACTTTTGGTTGAACTTTGAAATGGCATGTATA
60820878 GGACTACCCT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.23, C:0.14, G:0.21, T:0.43
Consensus pattern (44 bp):
CCTTTTGGTACACTTTTGGTTGAACTTTGAAATGGCATGTATAC
Found at i:60827454 original size:79 final size:81
Alignment explanation
Indices: 60827318--60827502 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
60827308 TTGAATGATG
*
60827318 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
60827382 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
60827397 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
60827459 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
60827477 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
60827503 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:60827516 original size:40 final size:40
Alignment explanation
Indices: 60827319--60827502 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
60827309 TGAATGATGT
* * * *
60827319 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
60827359 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
60827399 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
60827437 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
60827478 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
60827503 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:60827524 original size:79 final size:79
Alignment explanation
Indices: 60827371--60827535 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
60827361 GGACTAAGAT
* **
60827371 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
60827436 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
60827450 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
60827513 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
60827529 CCGAAGG
1 CCGAAGG
60827536 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:60829252 original size:44 final size:44
Alignment explanation
Indices: 60829116--60829282 Score: 154
Period size: 43 Copynumber: 3.9 Consensus size: 44
60829106 CAATACCGAC
* * *
60829116 GTCCCAGACGTGGTCTTACATGT-AAT-TCAGTATCGATGCCTCT
1 GTCCCAGACATGGTCTTACACGTAAATCTCA-TATCGATGCCTGT
**
60829159 GTCCCA-AGCA-GGTTCTTACACG-AAATCAGATAT-GATGCC-GAT
1 GTCCCAGA-CATGG-TCTTACACGTAAATCTCATATCGATGCCTG-T
* *
60829201 GTCCCAGACATGGTCTTACACGTAAATCTCAAATCGAGGCCTGT
1 GTCCCAGACATGGTCTTACACGTAAATCTCATATCGATGCCTGT
*
60829245 GTCCCAGACATGGTCTTACACG-ATAA-CTCAGATCGATG
1 GTCCCAGACATGGTCTTACACGTA-AATCTCATATCGATG
60829283 TTCACATTCC
Statistics
Matches: 102, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
42 27 0.26
43 43 0.42
44 31 0.30
45 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (44 bp):
GTCCCAGACATGGTCTTACACGTAAATCTCATATCGATGCCTGT
Found at i:60829264 original size:86 final size:87
Alignment explanation
Indices: 60829111--60829277 Score: 209
Period size: 86 Copynumber: 1.9 Consensus size: 87
60829101 GGGTACAATA
* * * *
60829111 CCGACGTCCCAGACGTGGTCTTACATGTAATTCAGTATCGATGCCTCTGTCCCAAGCAGGTTCTT
1 CCGACGTCCCAGACATGGTCTTACACGTAATTCAGAATCGAGGCCTCTGTCCCAAGCAGGTTCTT
60829176 ACACGA-AA-TCAGATATGATG
66 ACACGATAACTCAGATATGATG
* *
60829196 CCGATGTCCCAGACATGGTCTTACACGTAAATCTCA-AATCGAGGCCTGTGTCCC-AGACATGG-
1 CCGACGTCCCAGACATGGTCTTACACGT-AAT-TCAGAATCGAGGCCTCTGTCCCAAG-CA-GGT
60829258 TCTTACACGATAACTCAGAT
62 TCTTACACGATAACTCAGAT
60829278 CGATGTTCAC
Statistics
Matches: 70, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
85 27 0.39
86 30 0.43
87 7 0.10
88 6 0.09
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (87 bp):
CCGACGTCCCAGACATGGTCTTACACGTAATTCAGAATCGAGGCCTCTGTCCCAAGCAGGTTCTT
ACACGATAACTCAGATATGATG
Found at i:60832632 original size:28 final size:27
Alignment explanation
Indices: 60832558--60832632 Score: 87
Period size: 28 Copynumber: 2.7 Consensus size: 27
60832548 AAAGAACACT
* *
60832558 TTCGTGGCAATCTTCGAAAAAGGCGCC
1 TTCGTGGCAATCTTTGAAAAAGACGCC
* *
60832585 TTCGTGGCAATCTCTAAAAATAGACGCC
1 TTCGTGGCAATCTTTGAAAA-AGACGCC
* *
60832613 TTTGTTGCAATCTTTGAAAA
1 TTCGTGGCAATCTTTGAAAA
60832633 GGAAGCCTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
27 17 0.44
28 22 0.56
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.29
Consensus pattern (27 bp):
TTCGTGGCAATCTTTGAAAAAGACGCC
Found at i:60838393 original size:27 final size:27
Alignment explanation
Indices: 60838362--60838440 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
60838352 GTGTACTTTG
*
60838362 AATGAATCACATTTGTGGCATACTCTA
1 AATGAATCGCATTTGTGGCATACTCTA
* * * **
60838389 TATGAATTGCCTTTGTGGTGTACTCTA
1 AATGAATCGCATTTGTGGCATACTCTA
* *
60838416 AATGGATCGCTTTTGTGGCATACTC
1 AATGAATCGCATTTGTGGCATACTC
60838441 AGGATAGATT
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (27 bp):
AATGAATCGCATTTGTGGCATACTCTA
Found at i:60840371 original size:12 final size:14
Alignment explanation
Indices: 60840354--60840386 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
60840344 TGCGAGAACA
60840354 TATGTGTA-G-TAC
1 TATGTGTAGGCTAC
60840366 TATGTGTAGGCTAC
1 TATGTGTAGGCTAC
60840380 TATGTGT
1 TATGTGT
60840387 TTAAGACAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.42
13 1 0.05
14 10 0.53
ACGTcount: A:0.21, C:0.09, G:0.27, T:0.42
Consensus pattern (14 bp):
TATGTGTAGGCTAC
Found at i:60840462 original size:50 final size:50
Alignment explanation
Indices: 60840355--60840785 Score: 355
Period size: 50 Copynumber: 8.5 Consensus size: 50
60840345 GCGAGAACAT
* * * *
60840355 ATGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAGACAG-TT-TTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTGTTAGGTCAC
* *
60840407 ATGTGTAGTTCTAAGTGCAGGCTATTACGTGTACCAGATTGTTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCAC
* * * ** * * * *
60840457 ATGTGTAGTATTAAATGCAGGCTACTATGCATACCCGATAGTTTCGATCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGTCAC
* * * * * *
60840508 GTGTGTAGTACTGAGTACAGGCTACTACATGTATCAGATGGTTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCAC
* * * * * *
60840558 GTGTGTAGTACTGAGTGCAGGCTACTACGTGTACCGGATTGATAGGCCGC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCAC
* * ** * * * *
60840608 ATGTGTAGTAATAAGTGTAGGCTACTGTGTGTACCCG-TTAAATTCGATCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTTAGGTCAC
* * * * * * *
60840659 GTGTGTCGTACTAAGTGCGGGCTACTACGTGTATCAGATGGATAAGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCAC
* * * * *
60840709 GTGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATTGATATGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCAC
60840759 ATGTGTAGTACTAAGTGCAGGCTACTA
1 ATGTGTAGTACTAAGTGCAGGCTACTA
60840786 TGCCTACTAG
Statistics
Matches: 297, Mismatches: 76, Indels: 14
0.77 0.20 0.04
Matches are distributed among these distances:
48 3 0.01
49 5 0.02
50 194 0.65
51 68 0.23
52 27 0.09
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCAC
Found at i:60840553 original size:101 final size:101
Alignment explanation
Indices: 60840403--60840788 Score: 281
Period size: 101 Copynumber: 3.8 Consensus size: 101
60840393 CAGTTTTAGG
* * * * * *
60840403 TCACATGTGTAGTTCTAAGTGCAGGCTATTACGTGTACCAGATTGTTAGGTCACATGTGTAGTAT
1 TCACATGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATGGTTAGGTCACATGTGTAGTAC
60840468 TAAATGCAGGCTACTATGCATACCCGATAGTTTCGA
66 TAAATGCAGGCTACTATGCATACCCGATAGTTTCGA
* * * *
60840504 TCACGTGTGTAGTACTGAGTACAGGCTACTACATGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATGGTTAGGTCACATGTGTAGTAC
* * * ** * * * * *
60840569 TGAGTGCAGGCTACTACGTGTACCGGATTG-ATAGG
66 TAAATGCAGGCTACTATGCATACCCGATAGTTTCGA
* * * ** *** * * ** * * * *
60840604 CCGCATGTGTAGTAATAAGTGTAGGCTACTGTGTGTACCCGTTAAATTCGATCACGTGTGTCGTA
1 TCACATGTGTAGTACTAAGTACAGGCTACTACATGTACCAGAT-GGTTAGGTCACATGTGTAGTA
* * * ** * * * * **
60840669 CTAAGTGCGGGCTACTACGTGTATCAGATGGATAAG-
65 CTAAATGCAGGCTACTATGCATACCCGATAGTTTCGA
* * * *
60840705 TCACGTGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATTGATATGTCACATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATGGTTAGGTCACATGTGTAGTAC
*
60840770 TAAGTGCAGGCTACTATGC
66 TAAATGCAGGCTACTATGC
60840789 CTACTAGAGA
Statistics
Matches: 216, Mismatches: 67, Indels: 5
0.75 0.23 0.02
Matches are distributed among these distances:
100 62 0.29
101 152 0.70
102 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (101 bp):
TCACATGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATGGTTAGGTCACATGTGTAGTAC
TAAATGCAGGCTACTATGCATACCCGATAGTTTCGA
Found at i:60840682 original size:151 final size:151
Alignment explanation
Indices: 60840398--60840788 Score: 530
Period size: 151 Copynumber: 2.6 Consensus size: 151
60840388 TAAGACAGTT
* * * *
60840398 TTAGGTCACATGTGTAGTTCTAAGTGCAGGCTATTACGTGTACCAGATTGTTAGGTCACATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGT
* * ** *
60840463 AGTATTAAATGCAGGCTACTATGCATACCCGATAGTTTCGATCACGTGTGTAGTACTGAGTACAG
66 AGTAATAAGTGCAGGCTACTATGCATACCCGATAAATTCGATCACGTGTGTAGTACTAAGTACAG
60840528 GCTACTACATGTATCAGATGG
131 GCTACTACATGTATCAGATGG
* * * *
60840549 TTAGGTCACGTGTGTAGTACTGAGTGCAGGCTACTACGTGTACCGGATTGATAGGCCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGT
* * ** * * * *
60840614 AGTAATAAGTGTAGGCTACTGTGTGTACCCGTTAAATTCGATCACGTGTGTCGTACTAAGTGCGG
66 AGTAATAAGTGCAGGCTACTATGCATACCCGATAAATTCGATCACGTGTGTAGTACTAAGTACAG
*
60840679 GCTACTACGTGTATCAGATGG
131 GCTACTACATGTATCAGATGG
* * * * *
60840700 ATAAGTCACGTGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATTGATATGTCACATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGT
*
60840765 AGTACTAAGTGCAGGCTACTATGC
66 AGTAATAAGTGCAGGCTACTATGC
60840789 CTACTAGAGA
Statistics
Matches: 205, Mismatches: 35, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
151 205 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (151 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGT
AGTAATAAGTGCAGGCTACTATGCATACCCGATAAATTCGATCACGTGTGTAGTACTAAGTACAG
GCTACTACATGTATCAGATGG
Found at i:60845218 original size:33 final size:33
Alignment explanation
Indices: 60845181--60845248 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
60845171 CACAAGAGGG
*
60845181 TAAATTGCCGATGCCATATCCCAGATATGGTCT
1 TAAATTGCCAATGCCATATCCCAGATATGGTCT
60845214 TAAATTGCCAATGCCATATCCCAGATATGGTCT
1 TAAATTGCCAATGCCATATCCCAGATATGGTCT
60845247 TA
1 TA
60845249 CACTGGCTCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (33 bp):
TAAATTGCCAATGCCATATCCCAGATATGGTCT
Found at i:60845369 original size:48 final size:48
Alignment explanation
Indices: 60845224--60845639 Score: 369
Period size: 48 Copynumber: 8.7 Consensus size: 48
60845214 TAAATTGCCA
* * * * * * *
60845224 ATGCCATATCCCAGATATGGTCTTACACTGGCTCACAT-GTCGA-GGTCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT--ATGGCCG
* * *
60845272 ATGCCATATCCTAGACATGGTTTTACACTAGCTCTCATCTCAATA---CCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA--T-AATATGGCCG
* *
60845320 ATGCCATGTCCCAGACATGGTCTTACAATAGCTCTCATAATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATATGGCCG
* * * *
60845368 ATGACATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATATGGCCG
* * * **
60845416 ATGCCATCTCCCAGACATGGTCTTACACTAGCACACA-AATCAACGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-ATGGCCG
* * * * * *
60845464 ATGCCATGTCCCAAACATGGTCTTACATTGGCTCTTATAATATGACTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATATGGCCG
* * * * **
60845512 ATGCCATGTCCTAGGCATGGTCTTACACTAGCACACAT-ATCAACGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-ATGGCCG
* * * * * *
60845560 ATGCCATGCCCCAGACATGATCCTACACTGGCTCTCATAATGTGGCGG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATATGGCCG
60845608 ATGCCATGTCCCAGACATGGTCTTACACTAGC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC
60845640 ATACATATCA
Statistics
Matches: 292, Mismatches: 65, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
45 3 0.01
46 1 0.00
47 5 0.02
48 275 0.94
49 5 0.02
50 2 0.01
52 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATATGGCCG
Found at i:60845647 original size:96 final size:96
Alignment explanation
Indices: 60845224--60845649 Score: 464
Period size: 96 Copynumber: 4.4 Consensus size: 96
60845214 TAAATTGCCA
* * * * * * * * * * *
60845224 ATGCCATATCCCAGATATGGTCTTACACTGGCTCACATGTCGAGGTCAATGCCATATCCTAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCGATGCCATGTCCCAGACA
* * * *
60845289 TGGTTTTACACTAGCTCTCATCTCAA--T-ACCG
66 TGGTCTTACACTGGCTCTCA--T-AATGTGGCTG
* * * *** *
60845320 ATGCCATGTCCCAGACATGGTCTTACAATAGCTCTCATAAT-GTGGCCGATGACATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACAT-ATCAACGCCGATGCCATGTCCCAGAC
60845384 ATGGTCTTACACTGGCTCTCATAATGTGGCTG
65 ATGGTCTTACACTGGCTCTCATAATGTGGCTG
* * *
60845416 ATGCCATCTCCCAGACATGGTCTTACACTAGCACACAAATCAACGCCGATGCCATGTCCCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCGATGCCATGTCCCAGACA
* * * *
60845481 TGGTCTTACATTGGCTCTTATAATATGACTG
66 TGGTCTTACACTGGCTCTCATAATGTGGCTG
* * *
60845512 ATGCCATGTCCTAGGCATGGTCTTACACTAGCACACATATCAACGCCGATGCCATGCCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCGATGCCATGTCCCAGACA
* * *
60845577 TGATCCTACACTGGCTCTCATAATGTGGCGG
66 TGGTCTTACACTGGCTCTCATAATGTGGCTG
*
60845608 ATGCCATGTCCCAGACATGGTCTTACACTAGCATACATATCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
60845650 CCCAATTGTC
Statistics
Matches: 279, Mismatches: 46, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
93 2 0.01
94 1 0.00
95 3 0.01
96 272 0.97
97 1 0.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.27
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCGATGCCATGTCCCAGACA
TGGTCTTACACTGGCTCTCATAATGTGGCTG
Found at i:60851392 original size:24 final size:24
Alignment explanation
Indices: 60851365--60851411 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
60851355 TTGTCAGGAG
*
60851365 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTAGATAAGGGAT
60851389 AGGATTTAGGAGTAGATAAGGGA
1 AGGATTTAGGAGTAGATAAGGGA
60851412 GGAAATTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.38, T:0.26
Consensus pattern (24 bp):
AGGATTTAGGAGTAGATAAGGGAT
Found at i:60851419 original size:24 final size:23
Alignment explanation
Indices: 60851365--60851424 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 23
60851355 TTGTCAGGAG
*
60851365 AGGATTTAGGAGTTGATAAGGGA
1 AGGATTTAGGAGTAGATAAGGGA
60851388 TAGGATTTAGGAGTAGATAAGGG-
1 -AGGATTTAGGAGTAGATAAGGGA
60851411 AGGAAATTTAGGAG
1 AGG--ATTTAGGAG
60851425 CTGATCAAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
22 3 0.09
24 30 0.91
ACGTcount: A:0.37, C:0.00, G:0.38, T:0.25
Consensus pattern (23 bp):
AGGATTTAGGAGTAGATAAGGGA
Found at i:60852869 original size:27 final size:26
Alignment explanation
Indices: 60852829--60852941 Score: 102
Period size: 27 Copynumber: 4.2 Consensus size: 26
60852819 AGGAAGCGTC
* *
60852829 CTGGTGGCTATGCCACAATTTTCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
60852856 CTGGTGGCTCTGCCACA-TATTTATATT
1 CTGGTGGCTCTGCCACATTATCT-GA-T
*
60852883 CTGGTGGCTCTGTCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
60852911 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
60852937 CTGGT
1 CTGGT
60852942 AGCCATGCTG
Statistics
Matches: 72, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
25 3 0.04
26 8 0.11
27 39 0.54
28 17 0.24
29 5 0.07
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.40
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:60852921 original size:28 final size:26
Alignment explanation
Indices: 60852881--60852941 Score: 95
Period size: 28 Copynumber: 2.3 Consensus size: 26
60852871 CATATTTATA
*
60852881 TTCTGGTGGCTCTGTCACGATTATCTG
1 TTCTGGTGACTCTGTCAC-ATTATCTG
60852908 TATCTGGTGACTCTGTCACATTATCTG
1 T-TCTGGTGACTCTGTCACATTATCTG
60852935 TTCTGGT
1 TTCTGGT
60852942 AGCCATGCTG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
26 6 0.19
27 10 0.31
28 16 0.50
ACGTcount: A:0.13, C:0.21, G:0.23, T:0.43
Consensus pattern (26 bp):
TTCTGGTGACTCTGTCACATTATCTG
Found at i:60852941 original size:54 final size:54
Alignment explanation
Indices: 60852829--60852941 Score: 129
Period size: 54 Copynumber: 2.1 Consensus size: 54
60852819 AGGAAGCGTC
* * *
60852829 CTGGTGGCTATGCCACAATTTTCTGATCTGGTGGCTCTGCCACATATTTATATT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATATATT
* * * * * *
60852883 CTGGTGGCTCTGTCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATATATT
60852937 CTGGT
1 CTGGT
60852942 AGCCATGCTG
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 31 0.63
55 18 0.37
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.40
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATATATT
Found at i:60859225 original size:24 final size:24
Alignment explanation
Indices: 60859193--60859257 Score: 103
Period size: 24 Copynumber: 2.7 Consensus size: 24
60859183 AAAGTCTGTC
*
60859193 AGGAGAGGATTTAGGAGTTGATAA
1 AGGATAGGATTTAGGAGTTGATAA
60859217 AGGATAGGATTTAGGAGTTGATAA
1 AGGATAGGATTTAGGAGTTGATAA
* *
60859241 GGGATAGAATTTAGGAG
1 AGGATAGGATTTAGGAG
60859258 CAGATAATGG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.37, C:0.00, G:0.37, T:0.26
Consensus pattern (24 bp):
AGGATAGGATTTAGGAGTTGATAA
Found at i:60860727 original size:27 final size:27
Alignment explanation
Indices: 60860687--60860779 Score: 98
Period size: 27 Copynumber: 3.4 Consensus size: 27
60860677 AGGAAGCGTC
*
60860687 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGGCTCTGCCACAATTATCTAAT
**
60860714 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTAAT
** *
60860741 CTGGTGGCTCTGCCATGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCT-AAT
*
60860769 CTGGTGACTCT
1 CTGGTGGCTCT
60860780 ATAACTTTAT
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
26 3 0.05
27 38 0.69
28 14 0.25
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTAAT
Found at i:60885141 original size:46 final size:46
Alignment explanation
Indices: 60885054--60885141 Score: 133
Period size: 46 Copynumber: 1.9 Consensus size: 46
60885044 TTCTCTTATA
* *
60885054 GCCGACGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGTG
1 GCCGACGCATGTCCCAGACATGTCTTACACTGCCCTACGTCTCGTG
*
60885100 GCCGATGCATGTCCCAGACATGTCTTACACTAGCCCT-CGTCT
1 GCCGACGCATGTCCCAGACATGTCTTACACT-GCCCTACGTCT
60885142 TAATGTCCAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
46 35 0.92
47 3 0.08
ACGTcount: A:0.18, C:0.34, G:0.22, T:0.26
Consensus pattern (46 bp):
GCCGACGCATGTCCCAGACATGTCTTACACTGCCCTACGTCTCGTG
Found at i:60892432 original size:47 final size:47
Alignment explanation
Indices: 60892361--60892536 Score: 153
Period size: 47 Copynumber: 3.7 Consensus size: 47
60892351 TAAGGTGCCA
* * * *
60892361 ATGTCATGTCCTAGACACGATCTTACACTGGCTCATATCTCAAGTCG
1 ATGTCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGCCG
* **
60892408 ATGTCATGTCCCAGACATGGTCTTACACTGGCT-ATCCTCTTGTAGCCG
1 ATGTCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATC-TCAAGCCG
* * * * * * *
60892456 ATG-GATGTCCCAAATAAT-GTCTTACACTAGCCCTTGTCTCAATGCCG
1 ATGTCATGTCCCAGA-CATGGTCTTACACTGGCTCATATCTCAA-GCCG
*
60892503 ATGCCATGTCCC-GACATGGTCTTACACTGGCTCA
1 ATGTCATGTCCCAGACATGGTCTTACACTGGCTCA
60892537 CACATGAATG
Statistics
Matches: 100, Mismatches: 22, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
46 6 0.06
47 76 0.76
48 18 0.18
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.30
Consensus pattern (47 bp):
ATGTCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGCCG
Found at i:60892856 original size:13 final size:12
Alignment explanation
Indices: 60892835--60892868 Score: 59
Period size: 13 Copynumber: 2.8 Consensus size: 12
60892825 GGGGTTGTTT
60892835 ACTAACTAATTA
1 ACTAACTAATTA
60892847 ACTAAACTAATTA
1 ACT-AACTAATTA
60892860 ACTAACTAA
1 ACTAACTAA
60892869 ACTAAAGCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 9 0.43
13 12 0.57
ACGTcount: A:0.53, C:0.18, G:0.00, T:0.29
Consensus pattern (12 bp):
ACTAACTAATTA
Found at i:60892865 original size:17 final size:17
Alignment explanation
Indices: 60892835--60892873 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
60892825 GGGGTTGTTT
*
60892835 ACTAACTAATTAACTAA
1 ACTAACTAACTAACTAA
*
60892852 ACTAATTAACTAACTAA
1 ACTAACTAACTAACTAA
60892869 ACTAA
1 ACTAA
60892874 AGCAAAGAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.54, C:0.18, G:0.00, T:0.28
Consensus pattern (17 bp):
ACTAACTAACTAACTAA
Found at i:60897712 original size:12 final size:12
Alignment explanation
Indices: 60897692--60897726 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
60897682 CCTTAAGATT
60897692 CCATATGGTTTTC
1 CCAT-TGGTTTTC
60897705 CCATTGGTTTTC
1 CCATTGGTTTTC
*
60897717 CAATTGGTTT
1 CCATTGGTTT
60897727 GGGAGAAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 17 0.81
13 4 0.19
ACGTcount: A:0.14, C:0.20, G:0.17, T:0.49
Consensus pattern (12 bp):
CCATTGGTTTTC
Found at i:60904555 original size:21 final size:21
Alignment explanation
Indices: 60904531--60904571 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
60904521 GCTGTGTGTG
60904531 ACACATGGCCTTGGTACACGC
1 ACACATGGCCTTGGTACACGC
60904552 ACACATGGCCTTGGTACACG
1 ACACATGGCCTTGGTACACG
60904572 ACCGTGTGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.20
Consensus pattern (21 bp):
ACACATGGCCTTGGTACACGC
Found at i:60904674 original size:30 final size:30
Alignment explanation
Indices: 60904638--60904706 Score: 138
Period size: 30 Copynumber: 2.3 Consensus size: 30
60904628 ATACGACCTA
60904638 GACACACGGCCATGTCTACTGGCCGTGTGT
1 GACACACGGCCATGTCTACTGGCCGTGTGT
60904668 GACACACGGCCATGTCTACTGGCCGTGTGT
1 GACACACGGCCATGTCTACTGGCCGTGTGT
60904698 GACACACGG
1 GACACACGG
60904707 GCTGGCATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.20
Consensus pattern (30 bp):
GACACACGGCCATGTCTACTGGCCGTGTGT
Found at i:60906099 original size:16 final size:16
Alignment explanation
Indices: 60906078--60906112 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
60906068 AAAAATTATA
60906078 AAAAATATAAAATCAG
1 AAAAATATAAAATCAG
60906094 AAAAATATAAAATCAG
1 AAAAATATAAAATCAG
60906110 AAA
1 AAA
60906113 TAAATTATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.71, C:0.06, G:0.06, T:0.17
Consensus pattern (16 bp):
AAAAATATAAAATCAG
Found at i:60914522 original size:43 final size:42
Alignment explanation
Indices: 60914429--60914598 Score: 153
Period size: 43 Copynumber: 4.0 Consensus size: 42
60914419 GATTACCGAG
* *
60914429 ATGTGATTACATGTAAGTCCATGTCTAGGACACTGGCATTG-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACA-TGGCATTGTT
* *
60914471 ATTGTGATTACGTGCAAGACCATGTCTGGGACATTGGCATTGTT
1 A-TGTGATTACATGTAAGACCATGTCTGGGACA-TGGCATTGTT
* * * * * * * *
60914515 ATATGATTTCGTGTAAGACCCTGTTTGGGATAGTGGCATCGAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACA-TGGCATTGTT
* * * *
60914558 ATGTGATAACATGTAAGACTATATCTGGGATATGGCATTGT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATGGCATTGT
60914599 ACGAGCTTTA
Statistics
Matches: 102, Mismatches: 24, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
42 8 0.08
43 92 0.90
44 2 0.02
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (42 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATGGCATTGTT
Found at i:60917735 original size:54 final size:54
Alignment explanation
Indices: 60917653--60917765 Score: 181
Period size: 54 Copynumber: 2.1 Consensus size: 54
60917643 TGGTAGTAAA
* * *
60917653 CACACAGGCAGAGACACGGCCTTGTGTCTCATCCGTGTGAAGGGCACGGTCTAG
1 CACACAGGCAGAGACACGGCCGTGTGTCTCAGCCATGTGAAGGGCACGGTCTAG
* *
60917707 CACAGAGGCAGAGACACGGTCGTGTGTCTCAGCCATGTGAAGGGCACGGTCTAG
1 CACACAGGCAGAGACACGGCCGTGTGTCTCAGCCATGTGAAGGGCACGGTCTAG
60917761 CACAC
1 CACAC
60917766 TGGCGTGTGC
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.24, C:0.27, G:0.32, T:0.17
Consensus pattern (54 bp):
CACACAGGCAGAGACACGGCCGTGTGTCTCAGCCATGTGAAGGGCACGGTCTAG
Found at i:60918071 original size:20 final size:21
Alignment explanation
Indices: 60918032--60918071 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
60918022 GTTATAATGA
60918032 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
*
60918053 CCACACGGTCGTG-TGCCCT
1 CCACACGGGCGTGTTGCCCT
60918072 ATTTCAAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.40, G:0.28, T:0.23
Consensus pattern (21 bp):
CCACACGGGCGTGTTGCCCTT
Found at i:60922317 original size:51 final size:51
Alignment explanation
Indices: 60922258--60922370 Score: 172
Period size: 51 Copynumber: 2.2 Consensus size: 51
60922248 ACACTGATCA
*
60922258 CATTTATCACTTGCCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CATTTATCACTTGCCACTGATCAAATAAGTGTAGCTAAAGCTACCACTTAT
* * *
60922309 CATTTATCACTTGTCACTGATCAAATAAGTGTAGCTGAGGCTACCACTTAT
1 CATTTATCACTTGCCACTGATCAAATAAGTGTAGCTAAAGCTACCACTTAT
* *
60922360 CACTTGTCACT
1 CATTTATCACT
60922371 GATCAGAAGT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 56 1.00
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (51 bp):
CATTTATCACTTGCCACTGATCAAATAAGTGTAGCTAAAGCTACCACTTAT
Found at i:60923305 original size:198 final size:198
Alignment explanation
Indices: 60922957--60923328 Score: 672
Period size: 198 Copynumber: 1.9 Consensus size: 198
60922947 GAATTTGGAT
*
60922957 TGTGACAGCCCAAAATTGACCCTAGTCGGGAAGTGGTTTCGGGATCGCTAAACCGAGTCACCGAA
1 TGTGACAGCCCAAAATTGACCCTAGTCGGGAAGTGGTTTCGGGACCGCTAAACCGAGTCACCGAA
* *
60923022 ATGTTTGAATGTGATATTTATTGTCTAGAATATGTAATTATGAATGTGTGAAAATTTCAAGCTTC
66 ACGTTTGAATGTGATACTTATTGTCTAGAATATGTAATTATGAATGTGTGAAAATTTCAAGCTTC
*
60923087 GATTTAGTCGATTGCATGTGAATTTAGTCAATAGGACTTATGTGCGACATTTTTTGAAATGTGAT
131 AATTTAGTCGATTGCATGTGAATTTAGTCAATAGGACTTATGTGCGACATTTTTTGAAATGTGAT
60923152 AGG
196 AGG
*
60923155 TGTGACAGCCCAAAGTTGACCCTAGTCGGGAAGTGGTTTCGGGACCGCTAAACCGAGTCACCGAA
1 TGTGACAGCCCAAAATTGACCCTAGTCGGGAAGTGGTTTCGGGACCGCTAAACCGAGTCACCGAA
60923220 ACGTTTGAATGTGATACTTATTGTCTAGAATATGTAATTATGAATGTGTGAAAATTTCAAGCTTC
66 ACGTTTGAATGTGATACTTATTGTCTAGAATATGTAATTATGAATGTGTGAAAATTTCAAGCTTC
* * *
60923285 AATTTGGTTGATTTCATGTGAATTTAGTCAATAGGACTTATGTG
131 AATTTAGTCGATTGCATGTGAATTTAGTCAATAGGACTTATGTG
60923329 AGAAAATTCT
Statistics
Matches: 166, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
198 166 1.00
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (198 bp):
TGTGACAGCCCAAAATTGACCCTAGTCGGGAAGTGGTTTCGGGACCGCTAAACCGAGTCACCGAA
ACGTTTGAATGTGATACTTATTGTCTAGAATATGTAATTATGAATGTGTGAAAATTTCAAGCTTC
AATTTAGTCGATTGCATGTGAATTTAGTCAATAGGACTTATGTGCGACATTTTTTGAAATGTGAT
AGG
Found at i:60924786 original size:40 final size:40
Alignment explanation
Indices: 60924756--60925765 Score: 1581
Period size: 40 Copynumber: 25.3 Consensus size: 40
60924746 GGACTAAGAT
* * * *
60924756 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
60924796 CCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
60924836 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
60924876 CCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
60924916 CCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
60924956 CCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
60924996 CCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
60925036 CCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
60925076 CCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
60925116 CCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
60925156 CCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
60925196 CCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
60925236 CCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
60925276 CCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
60925316 CCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
60925356 CCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
60925396 CCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
60925436 CCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
60925476 CCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
60925516 CCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
60925556 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
60925596 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
*
60925636 CCGAAGGCATTCATGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
60925676 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * *
60925716 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
60925755 CCGAAGGCATT
1 CCGAAGGCATT
60925766 TGAACGAGGA
Statistics
Matches: 949, Mismatches: 21, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
39 34 0.04
40 915 0.96
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:60924840 original size:80 final size:80
Alignment explanation
Indices: 60924779--60925765 Score: 1805
Period size: 80 Copynumber: 12.3 Consensus size: 80
60924769 TGCGAGATAC
60924779 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
* *
60924844 ATTCGTGCGAGTTAT
66 ATTCGTGCAAGTTGT
60924859 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
60924924 ATTCGTGCAAGTTGT
66 ATTCGTGCAAGTTGT
60924939 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
60925004 ATTCGTGCAAGTTGT
66 ATTCGTGCAAGTTGT
60925019 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
60925084 ATTCGTGCAAGTTGT
66 ATTCGTGCAAGTTGT
60925099 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
60925164 ATTCGTGCAAGTTGT
66 ATTCGTGCAAGTTGT
60925179 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
60925244 ATTCGTGCAAGTTGT
66 ATTCGTGCAAGTTGT
60925259 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
60925324 ATTCGTGCAAGTTGT
66 ATTCGTGCAAGTTGT
60925339 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
60925404 ATTCGTGCAAGTTGT
66 ATTCGTGCAAGTTGT
60925419 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
60925484 ATTCGTGCAAGTTGT
66 ATTCGTGCAAGTTGT
60925499 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
* *
60925564 ATTCGTGCGAGTTAT
66 ATTCGTGCAAGTTGT
* *
60925579 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
* * *
60925644 ATTCATGCGAGTTAT
66 ATTCGTGCAAGTTGT
* *
60925659 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
** **
60925724 ATT-GTGTGAGTTAC
66 ATTCGTGCAAGTTGT
* * *
60925738 TAAAACCGGGCTATGTCCCGAAGGCATT
1 TAAATCCGGGTTAAGTCCCGAAGGCATT
60925766 TGAACGAGGA
Statistics
Matches: 892, Mismatches: 15, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
79 33 0.04
80 859 0.96
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (80 bp):
TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
ATTCGTGCAAGTTGT
Found at i:60924916 original size:120 final size:120
Alignment explanation
Indices: 60924779--60925765 Score: 1805
Period size: 120 Copynumber: 8.2 Consensus size: 120
60924769 TGCGAGATAC
60924779 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
* *
60924844 ATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGT
66 ATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGT
60924899 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
60924964 ATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGT
66 ATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGT
60925019 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
60925084 ATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGT
66 ATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGT
60925139 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
60925204 ATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGT
66 ATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGT
60925259 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
60925324 ATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGT
66 ATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGT
60925379 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
60925444 ATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGT
66 ATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGT
60925499 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
* * * *
60925564 ATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTAT
66 ATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGT
* * *
60925619 TAAATCCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
* * ** **
60925684 ATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTAC
66 ATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGT
* * *
60925738 TAAAACCGGGCTATGTCCCGAAGGCATT
1 TAAATCCGGGTTAAGTCCCGAAGGCATT
60925766 TGAACGAGGA
Statistics
Matches: 851, Mismatches: 16, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
119 34 0.04
120 817 0.96
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (120 bp):
TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
ATTCGTGCAAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGT
Found at i:60936859 original size:28 final size:28
Alignment explanation
Indices: 60936799--60936859 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
60936789 TTTGCATTGT
* *
60936799 TGTGTATTAGATCTAGTAAATTTTGATA
1 TGTGTATTAGATCAAGTAAATTTTGACA
* * *
60936827 CGTGTATTAGATCAAGTGATTTTTGACA
1 TGTGTATTAGATCAAGTAAATTTTGACA
60936855 TGTGT
1 TGTGT
60936860 TGAGGCAAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.44
Consensus pattern (28 bp):
TGTGTATTAGATCAAGTAAATTTTGACA
Found at i:60945263 original size:40 final size:40
Alignment explanation
Indices: 60945208--60945431 Score: 279
Period size: 40 Copynumber: 5.5 Consensus size: 40
60945198 TATTCGGATG
*
60945208 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
60945248 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTTCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
60945291 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
60945331 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * * *
60945371 ATATCCAGGCTAAGACCTGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
60945411 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
60945432 ATACTTGGGT
Statistics
Matches: 161, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 12 0.07
40 111 0.69
41 1 0.01
43 37 0.23
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:60945355 original size:83 final size:80
Alignment explanation
Indices: 60945216--60945431 Score: 274
Period size: 83 Copynumber: 2.7 Consensus size: 80
60945206 TGATATCCGA
* **
60945216 GCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCG
1 GCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCATGC-
** *
60945281 AGTAGTTTCTATACCCGG
65 --TAGTGACTATACCCAG
*
60945299 GCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCATGCT
1 GCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCATGCT
*
60945364 AGTGACTATATCCAG
66 AGTGACTATACCCAG
* * * *
60945379 GCTAAGACCTGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 GCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
60945432 ATACTTGGGT
Statistics
Matches: 120, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
79 14 0.12
80 44 0.37
81 2 0.02
83 60 0.50
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
GCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCATGCT
AGTGACTATACCCAG
Found at i:60963297 original size:22 final size:22
Alignment explanation
Indices: 60963187--60963298 Score: 68
Period size: 22 Copynumber: 4.9 Consensus size: 22
60963177 GAGACATGGC
60963187 CAGTAAGCTCATAATGAGCTGATAA
1 CAGTAAGCTCAT-ATGAGCTG--AA
*
60963212 CAGTAAGCTCGAT-TGAGTTGGAAA
1 CAGTAAGCTC-ATATGAGCT-G-AA
* * *
60963236 CGGAAAGCTC-TATTAAGCTGAA
1 CAGTAAGCTCATA-TGAGCTGAA
* * *
60963258 CAGTAAGCAC-TTTCGAGCTGAT
1 CAGTAAGCTCATAT-GAGCTGAA
60963280 CAGTAAGCTCATATGAGCT
1 CAGTAAGCTCATATGAGCT
60963299 ATTGTGAGTC
Statistics
Matches: 67, Mismatches: 14, Indels: 15
0.70 0.15 0.16
Matches are distributed among these distances:
21 1 0.01
22 31 0.46
23 3 0.04
24 19 0.28
25 11 0.16
26 2 0.03
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (22 bp):
CAGTAAGCTCATATGAGCTGAA
Found at i:60971390 original size:21 final size:21
Alignment explanation
Indices: 60971366--60971408 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
60971356 AGTTGTTTAC
*
60971366 CTATCAAAAACATTTCATTTT
1 CTATCAAAAACATTTAATTTT
* *
60971387 CTATCATAAATATTTAATTTT
1 CTATCAAAAACATTTAATTTT
60971408 C
1 C
60971409 AGCATATACG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.16, G:0.00, T:0.47
Consensus pattern (21 bp):
CTATCAAAAACATTTAATTTT
Found at i:60987686 original size:84 final size:84
Alignment explanation
Indices: 60987501--60987732 Score: 256
Period size: 84 Copynumber: 2.8 Consensus size: 84
60987491 TTGTATCATT
* * * **
60987501 AAATCAAATTAAAAT-ATGTTAAACGGCGAGAATAAATCCTGAAATAGA-ATTATTTGA-TTACG
1 AAATCAAA-TAAAATCTTGTTAAACGGCAAGAATAAATCCTGAAATAGATTTTATTT-ATTTAAT
****
60987563 TCTTTGTTTGGAAACAAAACA
64 TCTAAACTTGGAAACAAAACA
* *
60987584 ATATCGAATAAAATCTTGTTAAACGGCAAGAATAAATCCTGAAATAGATTTTATTTATTTCAATT
1 AAATCAAATAAAATCTTGTTAAACGGCAAGAATAAATCCTGAAATAGATTTTATTTATTT-AATT
*
60987649 C-AAACTTGGAAACAAAATA
65 CTAAACTTGGAAACAAAACA
** * *
60987668 AAATCAAATAAAATCTTGTTAAATAGCAGGAATAAATCCCGAAATAGATTTTATTTTATTTAATT
1 AAATCAAATAAAATCTTGTTAAACGGCAAGAATAAATCCTGAAATAGATTTTA-TTTATTTAATT
60987733 TCTCGTTTTT
Statistics
Matches: 126, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
82 6 0.05
83 38 0.30
84 72 0.57
85 10 0.08
ACGTcount: A:0.45, C:0.11, G:0.12, T:0.33
Consensus pattern (84 bp):
AAATCAAATAAAATCTTGTTAAACGGCAAGAATAAATCCTGAAATAGATTTTATTTATTTAATTC
TAAACTTGGAAACAAAACA
Found at i:60987787 original size:87 final size:86
Alignment explanation
Indices: 60987696--60987896 Score: 242
Period size: 87 Copynumber: 2.3 Consensus size: 86
60987686 TTAAATAGCA
* * *
60987696 GGAATAAATCCCGAAATAGATTTTATTTTATTTAATTTCTCGTTTTTGAAAACAAAATC-AAATC
1 GGAATAAATCCCGAAACAGATTTTATTTAATTTAATTTCTCATTTTTGAAAACAAAATCAAAATC
*
60987760 AAATAAATCTTTATTGAACGGTG
66 AAATAAATC--CATTGAACGGTG
* * * ** *
60987783 GGAATAAATCCCGAAACATATTTAATTTAATTTAATTTTTCATTTTTGGCAACAAAATCAAAATG
1 GGAATAAATCCCGAAACAGATTTTATTTAATTTAATTTCTCATTTTTGAAAACAAAATCAAAATC
* * *
60987848 TAATAAATCCGTTGAACTGTG
66 AAATAAATCCATTGAACGGTG
* *
60987869 GGAATCAATCCCGAAACGGATTTTATTT
1 GGAATAAATCCCGAAACAGATTTTATTT
60987897 CACTCATTTT
Statistics
Matches: 96, Mismatches: 17, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
86 33 0.34
87 51 0.53
88 12 0.12
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.36
Consensus pattern (86 bp):
GGAATAAATCCCGAAACAGATTTTATTTAATTTAATTTCTCATTTTTGAAAACAAAATCAAAATC
AAATAAATCCATTGAACGGTG
Found at i:60990219 original size:34 final size:34
Alignment explanation
Indices: 60990181--60990249 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
60990171 ATAAAAGTAA
*
60990181 TACTTAGGTTATATTAGGTTGTGATATCCTATGG
1 TACTTAGATTATATTAGGTTGTGATATCCTATGG
*
60990215 TACTTAGATTATATTGGGTTGTGATATCCTATGG
1 TACTTAGATTATATTAGGTTGTGATATCCTATGG
60990249 T
1 T
60990250 CCGGATCTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.23, C:0.09, G:0.23, T:0.45
Consensus pattern (34 bp):
TACTTAGATTATATTAGGTTGTGATATCCTATGG
Found at i:60991776 original size:15 final size:15
Alignment explanation
Indices: 60991727--60991777 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
60991717 TTTAAAAAAT
60991727 ATTTATATTATT-TTA
1 ATTTATA-TATTGTTA
* *
60991742 ATTTAAAT-TTGATA
1 ATTTATATATTGTTA
60991756 ATTTTATATATTGTTA
1 A-TTTATATATTGTTA
60991772 ATTTAT
1 ATTTAT
60991778 TAAGATTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
13 2 0.07
14 4 0.14
15 17 0.59
16 6 0.21
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (15 bp):
ATTTATATATTGTTA
Found at i:61003868 original size:45 final size:44
Alignment explanation
Indices: 61003762--61004002 Score: 335
Period size: 44 Copynumber: 5.5 Consensus size: 44
61003752 GGTACTAATT
*
61003762 GGGCCTTCGAGCCTAGCAGGCTATAATACCGGTGAAATGATATC
1 GGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATC
* * * *
61003806 GGGCCTTTGAGCCTAGCAGGATATAATGCTGGTGACAT-ACTATTC
1 GGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-TA-TC
61003851 GGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATC
1 GGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATC
* * * *
61003895 GGGCCTTTGAGCCTAGCAGGATATAATGCTGGTGACAT-ACTATTC
1 GGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-TA-TC
61003940 GGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATC
1 GGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATC
*
61003984 GAG-CTTCGAGCCTAGCAGG
1 GGGCCTTCGAGCCTAGCAGG
61004003 TGAAATGTCG
Statistics
Matches: 173, Mismatches: 18, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
43 18 0.10
44 77 0.45
45 76 0.44
46 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (44 bp):
GGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATC
Found at i:61003905 original size:89 final size:89
Alignment explanation
Indices: 61003754--61004002 Score: 448
Period size: 89 Copynumber: 2.8 Consensus size: 89
61003744 TATCGTACGG
*
61003754 TACTAATT-GGGCCTTCGAGCCTAGCAGGCTATAATACCGGTGAAATGATATCGGGCCTTTGAGC
1 TACT-ATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCCTTTGAGC
61003818 CTAGCAGGATATAATGCTGGTGACA
65 CTAGCAGGATATAATGCTGGTGACA
61003843 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCCTTTGAGCC
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCCTTTGAGCC
61003908 TAGCAGGATATAATGCTGGTGACA
66 TAGCAGGATATAATGCTGGTGACA
* *
61003932 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGAG-CTTCGAGCC
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCCTTTGAGCC
61003996 TAGCAGG
66 TAGCAGG
61004003 TGAAATGTCG
Statistics
Matches: 156, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
88 18 0.12
89 138 0.88
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (89 bp):
TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCCTTTGAGCC
TAGCAGGATATAATGCTGGTGACA
Found at i:61011808 original size:45 final size:45
Alignment explanation
Indices: 61011703--61011855 Score: 206
Period size: 44 Copynumber: 3.5 Consensus size: 45
61011693 TAGGTACTAA
* * *
61011703 TCGGGCCTTCGAGCCTAGTAGGCTATAAAGCCAGTGAAATGATAT
1 TCGGGCCTTCGAGCCTAGCAGGCTATAATGCTAGTGAAATGATAT
* *
61011748 T-GGGCCTTTGAGCCTAGCAGGCTATAATGCTAGTGAGAT-ACTAT
1 TCGGGCCTTCGAGCCTAGCAGGCTATAATGCTAGTGAAATGA-TAT
*
61011792 TCGGGCCTTCGAGCCTAGCAGGCTATAATGCTGGTGAAATGATA-
1 TCGGGCCTTCGAGCCTAGCAGGCTATAATGCTAGTGAAATGATAT
*
61011836 TC-GGTCTTCGAGCCTAGCAG
1 TCGGGCCTTCGAGCCTAGCAG
61011856 TCGAAATACC
Statistics
Matches: 96, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
43 18 0.19
44 39 0.41
45 38 0.40
46 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (45 bp):
TCGGGCCTTCGAGCCTAGCAGGCTATAATGCTAGTGAAATGATAT
Found at i:61021118 original size:27 final size:27
Alignment explanation
Indices: 61021088--61021436 Score: 391
Period size: 27 Copynumber: 12.9 Consensus size: 27
61021078 AGTACTCCCA
61021088 ATTTACAGAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
**
61021115 ATTTACAGAATTACCGTTTTACCCTTA
1 ATTTACAGAATTACCGTTTTACCCTCG
** *
61021142 ATTTTTAAAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
*
61021169 ATTTACAGAATTACCGTTTTACCCTTG
1 ATTTACAGAATTACCGTTTTACCCTCG
61021196 ATTTACAGAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
* **
61021223 ATTTATAGAATTATTGTTTTACCCTC-
1 ATTTACAGAATTACCGTTTTACCCTCG
**
61021249 AGTTTACAGAATTACTATTTTACCCTCG
1 A-TTTACAGAATTACCGTTTTACCCTCG
* **
61021277 ATTTATAGAATTACTATTTTACCCTC-
1 ATTTACAGAATTACCGTTTTACCCTCG
**
61021303 AGTTTACAGAATTACTATTTTACCCTCG
1 A-TTTACAGAATTACCGTTTTACCCTCG
** * * *
61021331 ATTTGTAAAATTACCATTTTACCCTTG
1 ATTTACAGAATTACCGTTTTACCCTCG
* *
61021358 ATTTACAAAATTACTAG-TTTACCCTC-
1 ATTTACAGAATTAC-CGTTTTACCCTCG
* *
61021384 AGTTTACAAAATTATCGTTTTACCCTCG
1 A-TTTACAGAATTACCGTTTTACCCTCG
* *
61021412 ATTTATAGAATTACCATTTTACCCT
1 ATTTACAGAATTACCGTTTTACCCT
61021437 TAATTGTGAA
Statistics
Matches: 278, Mismatches: 36, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
26 4 0.01
27 271 0.97
28 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
ATTTACAGAATTACCGTTTTACCCTCG
Found at i:61021476 original size:27 final size:27
Alignment explanation
Indices: 61021446--61021641 Score: 241
Period size: 27 Copynumber: 7.3 Consensus size: 27
61021436 TTAATTGTGA
* *
61021446 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
61021473 AATTTCCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
61021500 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
61021527 AATTACCAAAATACCCCTT-TAGGGTAG
1 AATTACCGAAATA-CCCTTGTAGGGTAG
*
61021554 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
61021581 AAATACCGAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
61021608 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
61021635 AATTACC
1 AATTACC
61021642 ATTTTGCCCC
Statistics
Matches: 147, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 5 0.03
27 137 0.93
28 5 0.03
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:61022055 original size:27 final size:27
Alignment explanation
Indices: 61022033--61022106 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
61022023 TAGGTGGGTT
*
61022033 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
61022060 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
61022087 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
61022107 CAGCCATGTT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:61022233 original size:6 final size:6
Alignment explanation
Indices: 61022224--61022356 Score: 123
Period size: 6 Copynumber: 21.8 Consensus size: 6
61022214 TTGCATTCAC
* *
61022224 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
61022273 -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG
61022322 ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
61022357 CATTTTGGTT
Statistics
Matches: 105, Mismatches: 10, Indels: 24
0.76 0.07 0.17
Matches are distributed among these distances:
5 7 0.07
6 88 0.84
7 7 0.07
8 3 0.03
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:61022259 original size:31 final size:30
Alignment explanation
Indices: 61022224--61022356 Score: 205
Period size: 31 Copynumber: 4.4 Consensus size: 30
61022214 TTGCATTCAC
61022224 ATTCTGATTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTCAC-TAATTCTG
61022255 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCA-CTAATTCTG
*
61022286 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTCACTAAT-TCTG
* *
61022316 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTCACTAATTCTG
61022346 ATTCTGATTCT
1 ATTCTGATTCT
61022357 CATTTTGGTT
Statistics
Matches: 97, Mismatches: 2, Indels: 7
0.92 0.02 0.07
Matches are distributed among these distances:
29 1 0.01
30 45 0.46
31 50 0.52
32 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTCACTAATTCTG
Found at i:61022374 original size:30 final size:30
Alignment explanation
Indices: 61022224--61022377 Score: 186
Period size: 30 Copynumber: 5.1 Consensus size: 30
61022214 TTGCATTCAC
* *
61022224 ATTCTGATTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-CAATTCTG
*
61022255 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACC-AATTCTG
*
61022286 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACCAAT-TCTG
**
61022316 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
* *
61022346 ATTCTGATTCTCATTTTGGTT-CCAATTCTG
1 ATTCTGATTCTGATTCT-GTTACCAATTCTG
61022376 AT
1 AT
61022378 AATGTTTCTT
Statistics
Matches: 111, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
29 1 0.01
30 56 0.50
31 54 0.49
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACCAATTCTG
Found at i:61023182 original size:10 final size:10
Alignment explanation
Indices: 61023167--61023211 Score: 51
Period size: 10 Copynumber: 4.8 Consensus size: 10
61023157 AGTTAGATTA
61023167 AACCTTAATT
1 AACCTTAATT
61023177 AACCTTAATT
1 AACCTTAATT
*
61023187 AA--TTAAGT
1 AACCTTAATT
*
61023195 AA-ATTAATT
1 AACCTTAATT
61023204 AACCTTAA
1 AACCTTAA
61023212 CCGTAATTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
8 7 0.23
9 7 0.23
10 16 0.53
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.38
Consensus pattern (10 bp):
AACCTTAATT
Found at i:61024188 original size:35 final size:35
Alignment explanation
Indices: 61024142--61024213 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
61024132 TCACCTAAGG
*
61024142 TTGACACACATAGGTTTTGCACAACGATTCGTACA
1 TTGACACACATAGGTTTTGCACAACGATTCATACA
*
61024177 TTGACACACATAGGTTTTGCACAACGGTTCATACA
1 TTGACACACATAGGTTTTGCACAACGATTCATACA
61024212 TT
1 TT
61024214 TAGGGTTTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.31
Consensus pattern (35 bp):
TTGACACACATAGGTTTTGCACAACGATTCATACA
Found at i:61024366 original size:22 final size:22
Alignment explanation
Indices: 61024330--61024439 Score: 136
Period size: 22 Copynumber: 5.0 Consensus size: 22
61024320 GGTTCACAAA
*
61024330 ACTAACATA-AGGGCTCGCATGGT
1 ACTAACATATA-GGCTCACAT-GT
61024353 A-TAACATATAGGCTTC-CATGT
1 ACTAACATATAGGC-TCACATGT
*
61024374 ACTAACATATAGGCTCACATAT
1 ACTAACATATAGGCTCACATGT
*
61024396 ACTAACATATTGGCTCACATGT
1 ACTAACATATAGGCTCACATGT
*
61024418 ACTAACATATAGGCTCGCATGT
1 ACTAACATATAGGCTCACATGT
61024440 TTACAGAGTT
Statistics
Matches: 78, Mismatches: 5, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
21 5 0.06
22 69 0.88
23 4 0.05
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (22 bp):
ACTAACATATAGGCTCACATGT
Found at i:61030096 original size:15 final size:15
Alignment explanation
Indices: 61030076--61030104 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
61030066 AAGAAATGGC
61030076 TAGTCATAGCACCAA
1 TAGTCATAGCACCAA
61030091 TAGTCATAGCACCA
1 TAGTCATAGCACCA
61030105 GATTGGAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.28, G:0.14, T:0.21
Consensus pattern (15 bp):
TAGTCATAGCACCAA
Found at i:61032448 original size:142 final size:142
Alignment explanation
Indices: 61032192--61032476 Score: 570
Period size: 142 Copynumber: 2.0 Consensus size: 142
61032182 AAAATAATAA
61032192 TAAGATTCATCTTAGGTTTCATTCCCCTTAGGTATTTAGGGATTTTAGTTCATAACTAAAAAAGA
1 TAAGATTCATCTTAGGTTTCATTCCCCTTAGGTATTTAGGGATTTTAGTTCATAACTAAAAAAGA
61032257 AAACATCTCAGAATAATAAAGAATACAAAACATAAAGAAAACCCAAAACTCCTGAAGGGAAAATT
66 AAACATCTCAGAATAATAAAGAATACAAAACATAAAGAAAACCCAAAACTCCTGAAGGGAAAATT
61032322 AAGGAGAGATCT
131 AAGGAGAGATCT
61032334 TAAGATTCATCTTAGGTTTCATTCCCCTTAGGTATTTAGGGATTTTAGTTCATAACTAAAAAAGA
1 TAAGATTCATCTTAGGTTTCATTCCCCTTAGGTATTTAGGGATTTTAGTTCATAACTAAAAAAGA
61032399 AAACATCTCAGAATAATAAAGAATACAAAACATAAAGAAAACCCAAAACTCCTGAAGGGAAAATT
66 AAACATCTCAGAATAATAAAGAATACAAAACATAAAGAAAACCCAAAACTCCTGAAGGGAAAATT
61032464 AAGGAGAGATCT
131 AAGGAGAGATCT
61032476 T
1 T
61032477 CAATCTTGAT
Statistics
Matches: 143, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
142 143 1.00
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26
Consensus pattern (142 bp):
TAAGATTCATCTTAGGTTTCATTCCCCTTAGGTATTTAGGGATTTTAGTTCATAACTAAAAAAGA
AAACATCTCAGAATAATAAAGAATACAAAACATAAAGAAAACCCAAAACTCCTGAAGGGAAAATT
AAGGAGAGATCT
Found at i:61035953 original size:63 final size:63
Alignment explanation
Indices: 61035854--61035976 Score: 183
Period size: 63 Copynumber: 2.0 Consensus size: 63
61035844 GTAGGACCCG
* * * * * * *
61035854 AGGAAGATGACGCTCCCTTCGTTTTCTTTGAAGCAGGGATAGCGGCCTTTTTACCACGTGCCA
1 AGGAAGATAACACTCCCTTCCTTTTCTTTGAAGCAGGGACAACGACCTTTTGACCACGTGCCA
61035917 AGGAAGATAACACTCCCTTCCTTTTCTTTGAAGCAGGGACAACGACCTTTTGACCACGTG
1 AGGAAGATAACACTCCCTTCCTTTTCTTTGAAGCAGGGACAACGACCTTTTGACCACGTG
61035977 AAAATGACAT
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
63 53 1.00
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.28
Consensus pattern (63 bp):
AGGAAGATAACACTCCCTTCCTTTTCTTTGAAGCAGGGACAACGACCTTTTGACCACGTGCCA
Found at i:61037368 original size:69 final size:69
Alignment explanation
Indices: 61037245--61037380 Score: 191
Period size: 69 Copynumber: 2.0 Consensus size: 69
61037235 AGGAGTTTAA
* * * * *
61037245 ACTCCTCATTCTTGCTATGAATCTCATCAAAATAAGGTTTTAGGCGGGTATTGTTTGCCTTAAAA
1 ACTCCTCATTCCTGCTATCAATCTCATCAAAATAAGGTTTCAGACGGGTATTGTTTACCTTAAAA
61037310 GTAT
66 GTAT
* * * *
61037314 ACTCCTTATTCCTGCTATCATTCTCATCAAAATAAGGTTTCAGATGGGTGTTGTTTACCTTAAAA
1 ACTCCTCATTCCTGCTATCAATCTCATCAAAATAAGGTTTCAGACGGGTATTGTTTACCTTAAAA
61037379 GT
66 GT
61037381 GCCGAACTTG
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
69 58 1.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.38
Consensus pattern (69 bp):
ACTCCTCATTCCTGCTATCAATCTCATCAAAATAAGGTTTCAGACGGGTATTGTTTACCTTAAAA
GTAT
Found at i:61042771 original size:47 final size:47
Alignment explanation
Indices: 61042693--61043015 Score: 358
Period size: 49 Copynumber: 6.5 Consensus size: 47
61042683 CCCTTCGGGA
* * * * * * *
61042693 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCGACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
61042740 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
61042787 CTTATCACATATATACACATATATATACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATAT--AC--------ACTTTCACATTCATCACATCGGCCATTAGGC
*
61042844 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
61042891 CTTATCACATATATATACACTTTCATATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
61042940 CTTATCACATATATATACACTTTCACATTTATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61042989 CTTATCACATATATATACACTTTCACA
1 CTTATCAC--ATATATACACTTTCACA
61043016 CATTCATATT
Statistics
Matches: 244, Mismatches: 20, Indels: 22
0.85 0.07 0.08
Matches are distributed among these distances:
47 87 0.36
49 111 0.45
55 2 0.01
57 44 0.18
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:61042983 original size:98 final size:96
Alignment explanation
Indices: 61042693--61043015 Score: 407
Period size: 104 Copynumber: 3.3 Consensus size: 96
61042683 CCCTTCGGGA
* * * * * * * *
61042693 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCGACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
61042756 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATTGGCCATTAGGC
* *
61042787 CTTATCACATATATACACATATATATACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC
1 CTTATCAC----AT----ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
61042852 ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
58 ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
61042891 CTTATCACATATATATACACTTTCATATTCATCACATCGGCCATTCGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
* *
61042956 ACACTTTCACATTTATCACATTGGCCATTCGGC
64 ACACTTTCACATTCATCACATTGGCCATTAGGC
61042989 CTTATCACATATATATACACTTTCACA
1 CTTATCACATATATATACACTTTCACA
61043016 CATTCATATT
Statistics
Matches: 200, Mismatches: 17, Indels: 20
0.84 0.07 0.08
Matches are distributed among these distances:
94 8 0.04
96 43 0.22
98 65 0.32
100 2 0.01
103 1 0.00
104 81 0.41
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.34
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:61044143 original size:40 final size:40
Alignment explanation
Indices: 61044098--61044538 Score: 634
Period size: 40 Copynumber: 11.1 Consensus size: 40
61044088 CGAATACACG
* * * *
61044098 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * * * *
61044138 ACACCAGCACGAATGCTCTTCGAGG-TTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCG-GGACTTAGCCCGGATACA
* * *
61044178 TTACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
61044218 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
61044258 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
61044298 TCACTAACATGAATGCTCTTCAGGACTTAGCCCGGGTACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
61044338 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
61044378 TCACTAACATGAATGCTCTTCAGGACTTAGCCCGGGTACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
61044418 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
61044458 TCACTAGCATGAATGCTCTTCGGGACTCAGCCCGGGTACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
61044498 TCATTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
61044537 TC
1 TC
61044539 GTCGAGACCT
Statistics
Matches: 360, Mismatches: 39, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
39 5 0.01
40 353 0.98
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:61046891 original size:49 final size:49
Alignment explanation
Indices: 61046765--61047297 Score: 847
Period size: 49 Copynumber: 11.1 Consensus size: 49
61046755 CCCTTCGGGA
* * * * *
61046765 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
61046812 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
61046859 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
61046908 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
61046957 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
61047006 CTTATCACATATATATACACTTTCACATTTATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61047055 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61047104 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61047153 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATCT-GGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCAT-TAGGC
61047200 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATCT-GGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCAT-TAGGC
61047247 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61047294 CTTA
1 CTTA
61047298 CTATCATTTC
Statistics
Matches: 465, Mismatches: 15, Indels: 12
0.95 0.03 0.02
Matches are distributed among these distances:
46 2 0.00
47 177 0.38
48 1 0.00
49 285 0.61
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:61049185 original size:18 final size:20
Alignment explanation
Indices: 61049162--61049202 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
61049152 GTTTTCATCA
61049162 TATTCCC-TT-TCATTATTT
1 TATTCCCATTCTCATTATTT
*
61049180 TATTCCCATTCTCCTTATTT
1 TATTCCCATTCTCATTATTT
61049200 TAT
1 TAT
61049203 CATACTTCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 7 0.35
19 2 0.10
20 11 0.55
ACGTcount: A:0.17, C:0.24, G:0.00, T:0.59
Consensus pattern (20 bp):
TATTCCCATTCTCATTATTT
Found at i:61065798 original size:15 final size:15
Alignment explanation
Indices: 61065757--61065799 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
61065747 CGTATTGTTG
*
61065757 GATTAAGTTGAATGA
1 GATTAATTTGAATGA
* *
61065772 AATTGTATTTGAATGA
1 GATT-AATTTGAATGA
61065788 GATTAATTTGAA
1 GATTAATTTGAA
61065800 ATTGTATAGA
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
15 10 0.45
16 12 0.55
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.40
Consensus pattern (15 bp):
GATTAATTTGAATGA
Found at i:61074436 original size:11 final size:11
Alignment explanation
Indices: 61074400--61074455 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
61074390 CATGGTATGT
61074400 ATGATATGCAC
1 ATGATATGCAC
* *
61074411 ATGACATG--T
1 ATGATATGCAC
61074420 ATGATATGCAC
1 ATGATATGCAC
*
61074431 ATGATATG--T
1 ATGATATGCAC
61074440 ATGATATGCAC
1 ATGATATGCAC
61074451 ATGAT
1 ATGAT
61074456 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:61074455 original size:20 final size:20
Alignment explanation
Indices: 61074389--61074455 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
61074379 ATTTTGATAA
*
61074389 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
61074409 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
61074429 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
61074449 ACATGAT
1 ACATGAT
61074456 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:61074526 original size:25 final size:25
Alignment explanation
Indices: 61074498--61074626 Score: 149
Period size: 25 Copynumber: 5.2 Consensus size: 25
61074488 AGGAAGTGCA
61074498 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
61074523 AAAGGGCTTATACCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
61074548 AAAGGGCTTATGCCCCAGTTATTA-
1 AAAGGGCTTATGCCCCAGTTATGAT
* *
61074572 AAAGGGC-TCTGCCCCAGTTATTA-
1 AAAGGGCTTATGCCCCAGTTATGAT
*
61074595 AAAGAGGC-TAGGCCTCCAGTTATATGAT
1 AAAG-GGCTTATGCC-CCAG-T-TATGAT
61074623 AAAG
1 AAAG
61074627 CAGCTATGCT
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
23 19 0.21
24 14 0.15
25 50 0.54
26 1 0.01
27 4 0.04
28 4 0.04
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.26
Consensus pattern (25 bp):
AAAGGGCTTATGCCCCAGTTATGAT
Found at i:61074865 original size:31 final size:31
Alignment explanation
Indices: 61074811--61074871 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
61074801 CGTTTACAGT
*
61074811 AAAGGCTTCGGCCCAGTAATATGAGATATGG
1 AAAGGCTTCGGCCCAGTAATATGAAATATGG
* **
61074842 AAAGGTTTCGGCCCAGTGTTATGAAATATG
1 AAAGGCTTCGGCCCAGTAATATGAAATATG
61074872 AAATATGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGG
Found at i:61076460 original size:34 final size:34
Alignment explanation
Indices: 61076417--61076485 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
61076407 CGTATGTTTA
*
61076417 AATAATGTTTTAATGTTATTTTGATGTATATGCT
1 AATAATGTTTTAATGTTATTTTGATGCATATGCT
61076451 AATAATGTTTTAATGTTATTTTGATGCATATGCT
1 AATAATGTTTTAATGTTATTTTGATGCATATGCT
61076485 A
1 A
61076486 TTGTGATATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.30, C:0.04, G:0.14, T:0.51
Consensus pattern (34 bp):
AATAATGTTTTAATGTTATTTTGATGCATATGCT
Found at i:61079816 original size:17 final size:17
Alignment explanation
Indices: 61079794--61079826 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
61079784 TTTAAGAGAC
*
61079794 ATAACTTTTGATTTGTT
1 ATAACTTTTCATTTGTT
61079811 ATAACTTTTCATTTGT
1 ATAACTTTTCATTTGT
61079827 AATTAGTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.09, G:0.09, T:0.58
Consensus pattern (17 bp):
ATAACTTTTCATTTGTT
Found at i:61090192 original size:40 final size:39
Alignment explanation
Indices: 61090094--61090316 Score: 241
Period size: 40 Copynumber: 5.6 Consensus size: 39
61090084 TCCTCGTTCA
* * * * *
61090094 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
61090133 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
61090172 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
61090212 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * * * * *
61090252 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
61090293 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
61090317 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:61090316 original size:120 final size:119
Alignment explanation
Indices: 61090094--61090316 Score: 272
Period size: 120 Copynumber: 1.9 Consensus size: 119
61090084 TCCTCGTTCA
* * * *
61090094 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
* *
61090159 TAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66 TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * *
61090213 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* *
61090277 TATATTC-ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAAC-TAGCACGAAAGCCTTCGGGACTTAACCCGGA
61090317 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
119 37 0.43
120 44 0.51
121 6 0.07
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:61090889 original size:80 final size:81
Alignment explanation
Indices: 61090794--61090953 Score: 268
Period size: 80 Copynumber: 2.0 Consensus size: 81
61090784 CACACTAGTA
* *
61090794 AAGCATCCTCCCCCTTTTCATCGATTTAACACATGCATTGCTCATCAACATGC-AAAGTTACATT
1 AAGCATCCTCCCCCTTTCCATCAATTTAACACATGCATTGCTCATCAACATGCAAAAGTTACATT
61090858 CGGCCTTAGCACACAT
66 CGGCCTTAGCACACAT
* * *
61090874 AAGCATCCTCTCCCTTTCCATCAATTTAACACATGCATTGCTCATTAACATGCAAAAGTTATATT
1 AAGCATCCTCCCCCTTTCCATCAATTTAACACATGCATTGCTCATCAACATGCAAAAGTTACATT
61090939 CGGCCTTAGCACACA
66 CGGCCTTAGCACACA
61090954 ACTTGCTAGC
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
80 49 0.66
81 25 0.34
ACGTcount: A:0.30, C:0.30, G:0.11, T:0.29
Consensus pattern (81 bp):
AAGCATCCTCCCCCTTTCCATCAATTTAACACATGCATTGCTCATCAACATGCAAAAGTTACATT
CGGCCTTAGCACACAT
Found at i:61102560 original size:40 final size:40
Alignment explanation
Indices: 61102516--61102777 Score: 319
Period size: 39 Copynumber: 6.7 Consensus size: 40
61102506 GCTCCTCGTT
* *
61102516 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
61102556 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
61102596 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
61102635 CAAATGCCTTCAGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
61102674 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
61102713 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
61102754 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
61102778 CATCATTCAA
Statistics
Matches: 201, Mismatches: 13, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
38 2 0.01
39 124 0.62
40 64 0.32
41 11 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:61104037 original size:85 final size:86
Alignment explanation
Indices: 61103891--61104061 Score: 317
Period size: 85 Copynumber: 2.0 Consensus size: 86
61103881 AGTTTCGGCT
61103891 AAATGAAGATGAGAAAGGATGAACAAAAATTTTCTCCTTTCTTTTCTTTAGCTCACGGCAAT-GG
1 AAATGAAGATGAGAAAGGATGAACAAAAATTTTCTCCTTTCTTTTCTTTAGCTCACGGCAATGGG
61103955 GGGGGGAAACAACTACACACA
66 GGGGGGAAACAACTACACACA
*
61103976 AAATGAAGATGAGAAAGGATGAACAAAAATTTTCTCCTTTCTTTTCTTTAGCTCACTGCAATGGG
1 AAATGAAGATGAGAAAGGATGAACAAAAATTTTCTCCTTTCTTTTCTTTAGCTCACGGCAATGGG
*
61104041 GGGGGGGAACAACTACACACA
66 GGGGGGAAACAACTACACACA
61104062 TTTTTTTTTT
Statistics
Matches: 83, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
85 61 0.73
86 22 0.27
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.25
Consensus pattern (86 bp):
AAATGAAGATGAGAAAGGATGAACAAAAATTTTCTCCTTTCTTTTCTTTAGCTCACGGCAATGGG
GGGGGGAAACAACTACACACA
Found at i:61106707 original size:20 final size:20
Alignment explanation
Indices: 61106678--61106716 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
61106668 ATATTTTCTG
*
61106678 GTAAATCATTTTACAGAAAA
1 GTAAAACATTTTACAGAAAA
*
61106698 GTAAAACATTTTCCAGAAA
1 GTAAAACATTTTACAGAAA
61106717 TCATTTTACG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.13, G:0.10, T:0.28
Consensus pattern (20 bp):
GTAAAACATTTTACAGAAAA
Found at i:61106723 original size:14 final size:14
Alignment explanation
Indices: 61106700--61106739 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
61106690 ACAGAAAAGT
*
61106700 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
61106714 AAATCATTTTACGG
1 AAAACATTTTACAG
61106728 AAAACATTTTAC
1 AAAACATTTTAC
61106740 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:61118908 original size:46 final size:46
Alignment explanation
Indices: 61118754--61118969 Score: 204
Period size: 46 Copynumber: 4.6 Consensus size: 46
61118744 ATTTGTTTGT
* * *
61118754 GAGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCAC-ATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGA
* * * * *
61118800 GAGCCAGTGTAAGACCATGTCTGGGACATGGCACCGACATTGAGATGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGA
* *
61118848 GAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGACGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-A
* * * *
61118895 -AGCTAGTGTAAGACATGTCTGGGACAAGCGTTGGCCACGAGATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGA
* * *
61118940 TAG-TCAGTGTAAGGCCATGTCTAGGACATG
1 GAGCT-AGTGTAA-GACATGTCTGGGACATG
61118970 GAATCGACTT
Statistics
Matches: 139, Mismatches: 24, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
45 2 0.01
46 72 0.52
47 42 0.30
48 22 0.16
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.23
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGA
Found at i:61119602 original size:12 final size:13
Alignment explanation
Indices: 61119574--61119606 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
61119564 TTATTTCTTT
61119574 TTCTCCATCTACC
1 TTCTCCATCTACC
*
61119587 TTCTCC-TCTTCC
1 TTCTCCATCTACC
61119599 TTCTCCAT
1 TTCTCCAT
61119607 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:61120703 original size:28 final size:28
Alignment explanation
Indices: 61120671--61120735 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
61120661 ATTTACTAGA
*
61120671 ATACCCCTATGTATGAAAAATTACCATT
1 ATACCCCTATGTATGAAAAATGACCATT
* * *
61120699 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGAAAAATGACCATT
61120727 ATACCCCTA
1 ATACCCCTA
61120736 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.34, C:0.26, G:0.09, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGAAAAATGACCATT
Found at i:61120882 original size:28 final size:29
Alignment explanation
Indices: 61120841--61120903 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
61120831 AGGAAGCGTC
*
61120841 CTGGTGGCTATGCCACAAATTATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTAT
61120869 CTGGTGGC-ACTGCCACAAAATATCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGTAT
61120898 CTGGTG
1 CTGGTG
61120904 ACTCTGTCAC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 1 0.03
28 24 0.75
29 7 0.22
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (29 bp):
CTGGTGGCTATGCCACAAAATATCTGTAT
Found at i:61120914 original size:29 final size:28
Alignment explanation
Indices: 61120851--61120914 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
61120841 CTGGTGGCTA
* *
61120851 TGCCACAAATTATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
61120879 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
61120908 TGTCACA
1 TGCCACA
61120915 TTTTCTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 16 0.52
29 15 0.48
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:61125208 original size:41 final size:40
Alignment explanation
Indices: 61125081--61125225 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
61125071 CTCACACAAG
* * * * * *
61125081 GCCTTCGGGTCTTAACCCAGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
61125121 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
61125161 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
61125202 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
61125226 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.03
40 58 0.64
41 27 0.30
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:61138365 original size:9 final size:9
Alignment explanation
Indices: 61138351--61138540 Score: 100
Period size: 9 Copynumber: 20.6 Consensus size: 9
61138341 TATTTAAGTA
61138351 TTATGTAAG
1 TTATGTAAG
61138360 TTATGTAAG
1 TTATGTAAG
*
61138369 TTATGATATG
1 TTATG-TAAG
* * *
61138379 ATATAT-AT
1 TTATGTAAG
*
61138387 TTATGTAAA
1 TTATGTAAG
* *
61138396 TTATAT-AT
1 TTATGTAAG
*
61138404 TTATCTAAG
1 TTATGTAAG
*
61138413 TTATATAAG
1 TTATGTAAG
61138422 TTATGTAAG
1 TTATGTAAG
*
61138431 TTATGTAAA
1 TTATGTAAG
*
61138440 TTATGATATAAAA
1 TTATG---T-AAG
*
61138453 TATATTTAAG
1 T-TATGTAAG
61138463 TATTATGTAAG
1 --TTATGTAAG
61138474 TTATGTAAG
1 TTATGTAAG
* *
61138483 TTATAT-AT
1 TTATGTAAG
*
61138491 TTATCTAAG
1 TTATGTAAG
*
61138500 TTATATAAG
1 TTATGTAAG
61138509 TTATGTACA-
1 TTATGTA-AG
*
61138518 TTTTGTAAG
1 TTATGTAAG
* *
61138527 TTATATAAA
1 TTATGTAAG
61138536 TTATG
1 TTATG
61138541 ATATCAAATA
Statistics
Matches: 139, Mismatches: 29, Indels: 26
0.72 0.15 0.13
Matches are distributed among these distances:
8 17 0.12
9 96 0.69
10 9 0.06
11 8 0.06
12 2 0.01
13 4 0.03
14 3 0.02
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:61138433 original size:71 final size:69
Alignment explanation
Indices: 61138351--61138513 Score: 202
Period size: 71 Copynumber: 2.3 Consensus size: 69
61138341 TATTTAAGTA
* * * *
61138351 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTAAATTATAT-ATTTATCTAAGTT
1 TTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGT--ATTATATAAGTTATCTAAGTT
61138415 ATATAAG
64 ATAT-AG
* * *
61138422 TTATGTAAGTTATGTAAATTATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT
1 TTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGTATTATATAAGTTATCTAAGTTAT
*
61138487 ATAT
66 ATAG
* *
61138491 TTATCTAAGTTATATAAGTTATG
1 TTATGTAAGTTATGTAAGTTATG
61138514 TACATTTTGT
Statistics
Matches: 80, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
69 27 0.34
70 15 0.19
71 38 0.47
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.47
Consensus pattern (69 bp):
TTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGTATTATATAAGTTATCTAAGTTAT
ATAG
Found at i:61138489 original size:87 final size:91
Alignment explanation
Indices: 61138387--61138571 Score: 261
Period size: 96 Copynumber: 2.0 Consensus size: 91
61138377 TGATATATAT
*
61138387 TTATGTAAATTATATATTTATCTAAGTTATATAAG-T-T-A-TGTAAGTTATGTAAATTATGATA
1 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTGTAATTGTAAGTTATATAAATTATGATA
61138448 TAAAATATATTTAAGTATTATGTAAG
66 TAAAATATATTTAAGTATTATGTAAG
*
61138474 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTACATTTTGTAAGTTATATAAATTA
1 TTATGTAAATTATATATTTATCTAAGTTATATAAG-T-TGTA-A--TTGTAAGTTATATAAATTA
* *
61138539 TGATATCAAATATATTTATGTATTATGTAAG
61 TGATATAAAATATATTTAAGTATTATGTAAG
61138570 TT
1 TT
61138572 TTTTATTTCA
Statistics
Matches: 85, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
87 34 0.40
90 1 0.01
91 1 0.01
93 1 0.01
96 48 0.56
ACGTcount: A:0.39, C:0.02, G:0.11, T:0.48
Consensus pattern (91 bp):
TTATGTAAATTATATATTTATCTAAGTTATATAAGTTGTAATTGTAAGTTATATAAATTATGATA
TAAAATATATTTAAGTATTATGTAAG
Found at i:61138527 original size:114 final size:114
Alignment explanation
Indices: 61138327--61138540 Score: 290
Period size: 114 Copynumber: 1.9 Consensus size: 114
61138317 ACTAGTTATG
* * * *
61138327 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATATTTATG
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
* *
61138392 TAAATTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
66 TAAATTATACATTTATCTAAGTTATATAAATTATGTAAGTTATGTAAAT
* *
61138441 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-TTATCTAAGTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATAT-AGTTAT
* *
61138504 ATAAGTTATGTACATTT-TGTAAGTTATATAAATTATG
65 ATAAATTA--TACATTTATCTAAGTTATATAAATTATG
61138541 ATATCAAATA
Statistics
Matches: 87, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
112 4 0.05
113 15 0.17
114 62 0.71
115 6 0.07
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.47
Consensus pattern (114 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
TAAATTATACATTTATCTAAGTTATATAAATTATGTAAGTTATGTAAAT
Found at i:61138579 original size:87 final size:87
Alignment explanation
Indices: 61138387--61138571 Score: 227
Period size: 87 Copynumber: 2.1 Consensus size: 87
61138377 TGATATATAT
*
61138387 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
** *
61138452 ATATATTTAAGTATTATGTAAG
66 ATATATCAAAATATTATGTAAG
* *
61138474 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTACA-TTTTGTAAGTTAT-ATA-AA
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTA-AGTTATGTAAATTATGATATAA
*
61138536 TTATGATATCAAATATATTTATGT-A-
65 -AAT-ATATCAAA-ATA-TTATGTAAG
61138561 TTATGTAAGTT
1 TTATGTAAGTT
61138572 TTTTATTTCA
Statistics
Matches: 86, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
85 2 0.02
86 5 0.06
87 69 0.80
88 4 0.05
89 6 0.07
ACGTcount: A:0.39, C:0.02, G:0.11, T:0.48
Consensus pattern (87 bp):
TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
ATATATCAAAATATTATGTAAG
Found at i:61138665 original size:15 final size:15
Alignment explanation
Indices: 61138645--61138674 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
61138635 AAGTAGCAGG
61138645 ATTAAATAATATTTA
1 ATTAAATAATATTTA
61138660 ATTAAATAATATTTA
1 ATTAAATAATATTTA
61138675 TAAAAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:61138919 original size:73 final size:72
Alignment explanation
Indices: 61138802--61139039 Score: 433
Period size: 73 Copynumber: 3.3 Consensus size: 72
61138792 AAGTACATAT
**
61138802 TAATATAAAAAAAGAATCGT-AATAAAAAAATCAAACATTATTAATATAAAAAAATAGTAATTTG
1 TAATATAAAAAAAGAATCGTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTG
61138866 AATATAA
66 AATATAA
61138873 TAATATAAAAAAAAGAATCGTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTT
1 TAATAT-AAAAAAAGAATCGTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTT
61138938 GAATATAA
65 GAATATAA
61138946 TAATATAAAAAAAAGAATCGTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTT
1 TAATAT-AAAAAAAGAATCGTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTT
61139011 GAATATAA
65 GAATATAA
61139019 TAATATAAAAAAAGAATCGTA
1 TAATATAAAAAAAGAATCGTA
61139040 GTTTAATTTT
Statistics
Matches: 163, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
71 6 0.04
72 29 0.18
73 128 0.79
ACGTcount: A:0.61, C:0.04, G:0.06, T:0.29
Consensus pattern (72 bp):
TAATATAAAAAAAGAATCGTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTG
AATATAA
Found at i:61139526 original size:15 final size:15
Alignment explanation
Indices: 61139506--61139534 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
61139496 AGAATTTTGA
61139506 AATAAAACGTACCTT
1 AATAAAACGTACCTT
61139521 AATAAAACGTACCT
1 AATAAAACGTACCT
61139535 GGTCTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.24
Consensus pattern (15 bp):
AATAAAACGTACCTT
Found at i:61140047 original size:183 final size:183
Alignment explanation
Indices: 61139739--61140286 Score: 1024
Period size: 183 Copynumber: 3.0 Consensus size: 183
61139729 GAACAGATGC
61139739 AAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTATATCA
1 AAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTATATCA
61139804 GTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGCA
66 GTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGCA
61139869 GGAATCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACACATGT
131 GGAATCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACACATGT
* *
61139922 AAGATTATAAGAGTAGCACCAAATATATTTCAGTTCAAGAAAATATAAAAACTTTATCTATATCA
1 AAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTATATCA
61139987 GTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGCA
66 GTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGCA
*
61140052 GGAATCAGTAACAGAAATACATACAACATTAATTCACTAATACAGACACATGT
131 GGAATCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACACATGT
*
61140105 AAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATGAAAACTTTATCTATATCA
1 AAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTATATCA
61140170 GTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGCA
66 GTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGCA
* * * *
61140235 GGAAGCAGTAACTGAAACATATACAACATTAATTCACTAATATAGACACATG
131 GGAATCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACACATG
61140287 GAACTATATC
Statistics
Matches: 354, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
183 354 1.00
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (183 bp):
AAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTATATCA
GTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGCA
GGAATCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACACATGT
Found at i:61142529 original size:50 final size:51
Alignment explanation
Indices: 61142432--61142534 Score: 190
Period size: 50 Copynumber: 2.0 Consensus size: 51
61142422 ACACAAGTAT
61142432 ACCGTACTAGATTTAACCAATTTTTTTTTAAAATCACAACAATACCAATACA
1 ACCGTACTAGATTTAACCAA-TTTTTTTTAAAATCACAACAATACCAATACA
61142484 ACCGTACTAGATTTAACCAA-TTTTTTTAAAATCACAACAATACCAATACA
1 ACCGTACTAGATTTAACCAATTTTTTTTAAAATCACAACAATACCAATACA
61142534 A
1 A
61142535 ATATGTCTTA
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
50 31 0.61
52 20 0.39
ACGTcount: A:0.44, C:0.21, G:0.04, T:0.31
Consensus pattern (51 bp):
ACCGTACTAGATTTAACCAATTTTTTTTAAAATCACAACAATACCAATACA
Found at i:61143283 original size:15 final size:15
Alignment explanation
Indices: 61143263--61143311 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
61143253 GGTAAAAATT
61143263 TTGGGGGAGAAGAAG
1 TTGGGGGAGAAGAAG
*
61143278 TT-GGGG-G-A-AAT
1 TTGGGGGAGAAGAAG
61143289 TTGGGGGAGAAGAAG
1 TTGGGGGAGAAGAAG
61143304 TTGGGGGA
1 TTGGGGGA
61143312 AATCGGGGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
11 4 0.14
12 5 0.18
13 2 0.07
14 5 0.18
15 12 0.43
ACGTcount: A:0.29, C:0.00, G:0.53, T:0.18
Consensus pattern (15 bp):
TTGGGGGAGAAGAAG
Found at i:61143293 original size:26 final size:26
Alignment explanation
Indices: 61143262--61143314 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
61143252 GGGTAAAAAT
61143262 TTTGGGGGAGAAGAAGTTGGGGGAAA
1 TTTGGGGGAGAAGAAGTTGGGGGAAA
61143288 TTTGGGGGAGAAGAAGTTGGGGGAAA
1 TTTGGGGGAGAAGAAGTTGGGGGAAA
61143314 T
1 T
61143315 CGGGGAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.00, G:0.49, T:0.21
Consensus pattern (26 bp):
TTTGGGGGAGAAGAAGTTGGGGGAAA
Found at i:61143624 original size:28 final size:28
Alignment explanation
Indices: 61143592--61143649 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
61143582 AATCAAAACT
*
61143592 CTAT-ACCTTAAACCATTAAACTATATCC
1 CTATAACCTTAAACC-CTAAACTATATCC
* *
61143620 CTATAACCTTAATCCCTAAAGTATATCC
1 CTATAACCTTAAACCCTAAACTATATCC
61143648 CT
1 CT
61143650 TAAACCCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 17 0.65
29 9 0.35
ACGTcount: A:0.36, C:0.29, G:0.02, T:0.33
Consensus pattern (28 bp):
CTATAACCTTAAACCCTAAACTATATCC
Found at i:61143650 original size:21 final size:21
Alignment explanation
Indices: 61143626--61143669 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
61143616 ATCCCTATAA
* *
61143626 CCTTAATCCCTAAAGTATATC
1 CCTTAAACCCTAAACTATATC
61143647 CCTTAAACCCTAAACTATATC
1 CCTTAAACCCTAAACTATATC
61143668 CC
1 CC
61143670 CTAACCATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.34, C:0.34, G:0.02, T:0.30
Consensus pattern (21 bp):
CCTTAAACCCTAAACTATATC
Found at i:61143903 original size:7 final size:7
Alignment explanation
Indices: 61143891--61143924 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
61143881 CCCTAAGTAT
61143891 TAACCCC
1 TAACCCC
61143898 TAACCCC
1 TAACCCC
61143905 TAACCCC
1 TAACCCC
61143912 TAACCCC
1 TAACCCC
61143919 TAACCC
1 TAACCC
61143925 TTAAATCATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.29, C:0.56, G:0.00, T:0.15
Consensus pattern (7 bp):
TAACCCC
Found at i:61144087 original size:41 final size:41
Alignment explanation
Indices: 61144030--61144290 Score: 380
Period size: 41 Copynumber: 6.4 Consensus size: 41
61144020 AACCCTAAAC
61144030 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
*
61144071 TTTTTAGCGGTGTTTTACCAAAAGCGCCGCTAATGCTCTTA
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
* * * * *
61144112 TTTTTAGCGGTGTTTTACCAAAAGCGCCCCAAATACTCTGA
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
* * **
61144153 TTTTTAGCGACGCTTTACCAAAAGCGCCGCTAATGCTCCGA
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
*
61144194 TTTTTAACGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
* * *
61144235 TTTTTAGCGGCGTTTTACCAAAAGCGCCACTATTGCTC-TG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
*
61144275 CTTTTAGCGGCGTTTT
1 TTTTTAGCGGCGTTTT
61144291 TGGTAAAACG
Statistics
Matches: 198, Mismatches: 22, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
40 16 0.08
41 182 0.92
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (41 bp):
TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
Found at i:61144360 original size:12 final size:12
Alignment explanation
Indices: 61144345--61144370 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
61144335 ATTTTTTGAG
61144345 AAAACGCCGCTA
1 AAAACGCCGCTA
61144357 AAAACGCCGCTA
1 AAAACGCCGCTA
61144369 AA
1 AA
61144371 TACCTGTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:61152709 original size:46 final size:46
Alignment explanation
Indices: 61152561--61152733 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
61152551 ATTTGTTTGT
* * * * ** *
61152561 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCCAGTGTAAAACATGTCTGGGACATGCATCGACCTCAAGACGA
* * * * **
61152607 GAGCCAATGTAGACCATGTCTGGGACATGGCATCGACATTGAGACGA
1 GAGCCAGTGTAAAACATGTCTGGGACAT-GCATCGACCTCAAGACGA
*
61152654 GAGCTAGTGTAAAACATGTCTGGGACATGCATCGACCTCAAGACGTA
1 GAGCCAGTGTAAAACATGTCTGGGACATGCATCGACCTCAAGACG-A
*
61152701 -AGCCAGTGTAAGACATGTCTGGGACATGCATCG
1 GAGCCAGTGTAAAACATGTCTGGGACATGCATCG
61152734 GCTACGAGAT
Statistics
Matches: 103, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
46 68 0.66
47 35 0.34
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.21
Consensus pattern (46 bp):
GAGCCAGTGTAAAACATGTCTGGGACATGCATCGACCTCAAGACGA
Found at i:61152720 original size:93 final size:93
Alignment explanation
Indices: 61152561--61152836 Score: 285
Period size: 93 Copynumber: 3.0 Consensus size: 93
61152551 ATTTGTTTGT
* * * **
61152561 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATG-AGAGCCAATGT-AGACCAT
1 GAGCTAGTGTAAAACATGTCTGGGACATGCATCGACCTCAAGATGTA-AGCCAATGTAAGACCAT
61152624 GTCTGGGACATGGCATCGACATTGAGACGA
65 GTCTGGGACATGGCATCGAC-TTGAGACGA
* *
61152654 GAGCTAGTGTAAAACATGTCTGGGACATGCATCGACCTCAAGACGTAAGCCAGTGTAAGA-CATG
1 GAGCTAGTGTAAAACATGTCTGGGACATGCATCGACCTCAAGATGTAAGCCAATGTAAGACCATG
* * *
61152718 TCTGGGACAT-GCATCGGCTACGAGATGA
66 TCTGGGACATGGCATCGACT-TGAGACGA
* * * * ** * *
61152746 TAG-TCAGTGTGAGAGCATGTCTGGGACATGGAATCGA-CTTGAGATATGAGCCAATGTAAGACC
1 GAGCT-AGTGT-AAAACATGTCTGGGACAT-GCATCGACCTCAAGATGTAAGCCAATGTAAGACC
*
61152809 ATATCTGGGACATGGCATCGACTTGAGA
63 ATGTCTGGGACATGGCATCGACTTGAGA
61152837 TATGAGTCAG
Statistics
Matches: 152, Mismatches: 23, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
91 2 0.01
92 20 0.13
93 95 0.62
94 27 0.18
95 8 0.05
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (93 bp):
GAGCTAGTGTAAAACATGTCTGGGACATGCATCGACCTCAAGATGTAAGCCAATGTAAGACCATG
TCTGGGACATGGCATCGACTTGAGACGA
Found at i:61152754 original size:46 final size:47
Alignment explanation
Indices: 61152560--61152875 Score: 258
Period size: 47 Copynumber: 6.8 Consensus size: 47
61152550 CATTTGTTTG
* * * *
61152560 TGAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGC-C-ACATTA
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGCATCGACTCGAGATGA
* * *
61152604 TGAGAGCCAATGT-AGACCATGTCTGGGACATGGCATCGACATTGAGACGA
1 T--GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGAC-TCGAGATGA
* * * *
61152654 -GAGCTAGTGTAA-AACATGTCTGGGACATGCATCGACCTCAAGACG-
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGCATCGA-CTCGAGATGA
* *
61152699 TAAGCCAGTGTAAGA-CATGTCTGGGACATGCATCGGCTACGAGATGA
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGCATCGACT-CGAGATGA
* * * * *
61152746 T-AGTCAGTGTGAGAGCATGTCTGGGACATGGAATCGACTTGAGAT-A
1 TGAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGACTCGAGATGA
* * *
61152792 TGAGCCAATGTAAGACCATATCTGGGACATGGCATCGACTTGAGAT-A
1 TGAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGACTCGAGATGA
* * *
61152839 TGAGTCAGAGTAAGACCATGTCTGGGATATGACATCG
1 TGAGCCAGTGTAAGACCATGTCTGGGACATG-CATCG
61152876 GCACCTTACC
Statistics
Matches: 222, Mismatches: 33, Indels: 31
0.78 0.12 0.11
Matches are distributed among these distances:
44 1 0.00
45 5 0.02
46 84 0.38
47 121 0.55
48 8 0.04
50 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.23
Consensus pattern (47 bp):
TGAGCCAGTGTAAGACCATGTCTGGGACATGCATCGACTCGAGATGA
Found at i:61156076 original size:24 final size:23
Alignment explanation
Indices: 61156036--61156080 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
61156026 GCAAAATTAA
**
61156036 GTATAAAAATTAATAAAATATGC
1 GTATAAAAAGAAATAAAATATGC
61156059 GTATAAAAAGAAATTAAAATAT
1 GTATAAAAAGAAA-TAAAATAT
61156081 CACATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.60, C:0.02, G:0.09, T:0.29
Consensus pattern (23 bp):
GTATAAAAAGAAATAAAATATGC
Done.