Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 183 of 235
Found at i:62286270 original size:14 final size:15
Alignment explanation
Indices: 62286239--62286271 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
62286229 AACATACAAG
62286239 TAAAGCACATTAACA
1 TAAAGCACATTAACA
*
62286254 TAAATCACATT-ACA
1 TAAAGCACATTAACA
62286268 TAAA
1 TAAA
62286272 AACACAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.55, C:0.18, G:0.03, T:0.24
Consensus pattern (15 bp):
TAAAGCACATTAACA
Found at i:62286642 original size:20 final size:20
Alignment explanation
Indices: 62286613--62286657 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
62286603 AGCACATGTA
*
62286613 TTCATAAAATTTTATAACTT
1 TTCATAAAATTTTACAACTT
*
62286633 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
62286653 TTCAT
1 TTCAT
62286658 TTTAGTCCCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.36, C:0.16, G:0.00, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:62291354 original size:12 final size:12
Alignment explanation
Indices: 62291337--62291361 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
62291327 GTTAAACTAG
62291337 TTTTTCCTTACT
1 TTTTTCCTTACT
62291349 TTTTTCCTTACT
1 TTTTTCCTTACT
62291361 T
1 T
62291362 GGAAAGGGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.24, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTTTCCTTACT
Found at i:62293887 original size:48 final size:49
Alignment explanation
Indices: 62293771--62293897 Score: 150
Period size: 48 Copynumber: 2.6 Consensus size: 49
62293761 ACACATTAAA
* * * * *
62293771 GTCGATGTCGTGTCCCAGACAGGACTTACATTGACTTTCATATATCGAG
1 GTCGATGCCATGTCCCAGACAGGTCTTACAGTGACTCTCATATATCGAG
* * *
62293820 GCCGATTCCATGTCCCAGACAGGTCTTACAGTGA-TCTCATCTATCG-G
1 GTCGATGCCATGTCCCAGACAGGTCTTACAGTGACTCTCATATATCGAG
*
62293867 TGTCGATGCCATGTCTCAGACAGGTCTTACA
1 -GTCGATGCCATGTCCCAGACAGGTCTTACA
62293898 CTAACAAACA
Statistics
Matches: 66, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
47 1 0.02
48 37 0.56
49 28 0.42
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACAGGTCTTACAGTGACTCTCATATATCGAG
Found at i:62294948 original size:49 final size:49
Alignment explanation
Indices: 62294876--62294973 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
62294866 GAGAAGAAGA
62294876 TGAAAAAGGGATGATATCATCTTTCTTTTATTTTATTTTCTTTTTGGCC
1 TGAAAAAGGGATGATATCATCTTTCTTTTATTTTATTTTCTTTTTGGCC
62294925 TGAAAAAGGGATGATATCATCTTTCTTTTATTTTATTTTCTTTTTGGCC
1 TGAAAAAGGGATGATATCATCTTTCTTTTATTTTATTTTCTTTTTGGCC
62294974 AAATAAGTCA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.22, C:0.12, G:0.14, T:0.51
Consensus pattern (49 bp):
TGAAAAAGGGATGATATCATCTTTCTTTTATTTTATTTTCTTTTTGGCC
Found at i:62296709 original size:64 final size:63
Alignment explanation
Indices: 62296507--62297235 Score: 314
Period size: 64 Copynumber: 11.2 Consensus size: 63
62296497 AGATTATTCA
* * * * * **
62296507 TGATCTTAAATC-AAGTGAACTTTGGTTGCGATCTTGAATCATCTAACCTTAATAATATTAACTG
1 TGATCTTAAATCGAA-TGAACTTAGGTTGCGATATTAAATCAGCTAAACTTAATAATATT-GTTG
* * * ** ** * * * * * *
62296571 CGATCTTAAATCAAAAGTTCTTCAAAATTGCAATCTTAAATCAGCT-AACTCAAATAAAAGTATT
1 TGATCTTAAATCGAATGAACTT--AGGTTGCGATATTAAATCAGCTAAACT-TAATAATATTGTT
*
62296635 CT
63 -G
* *
62296637 TGATCTTAAATCGAATGAACTTAGGTTGCGATATTAAACCAACTAAACTTAATAATATTGGTTG
1 TGATCTTAAATCGAATGAACTTAGGTTGCGATATTAAATCAGCTAAACTTAATAATATT-GTTG
* * ** * * * *
62296701 TGACCTTAAATC-AGTGAGTTGTTTGGAGTTGCAATTTTAAATCAGCT-AACTCGAATAA-ATTT
1 TGATCTTAAATCGAATGA---ACTTAG-GTTGCGATATTAAATCAGCTAAACT-TAATAATA-TT
*
62296763 GTTCA
60 GTT-G
* * * * * *
62296768 TGATCTTAAATTGAATGAACTTAGGTTGGGATCTTAAATCAACTAACCTTAATAATATCGATTG
1 TGATCTTAAATCGAATGAACTTAGGTTGCGATATTAAATCAGCTAAACTTAATAATATTG-TTG
* * * * * *
62296832 TGATCTTAAAT-TAGTGAGTTATTTAGAGTTACGATATTAAATCAGCT-AACTCGAATAAAATTG
1 TGATCTTAAATCGAATGA---ACTTAG-GTTGCGATATTAAATCAGCTAAACT-TAATAATATTG
*
62296895 TTCT
61 TT-G
* * * * * *
62296899 TGGTCTTAAATCAAAAGAACTTAGGTTGCGATCTTAAATCAGCTAACCTTAATAATATCAGTTG
1 TGATCTTAAATCGAATGAACTTAGGTTGCGATATTAAATCAGCTAAACTTAATAATAT-TGTTG
* *** * * * * *
62296963 TGATCTTAAATCAGCGA-GTTGTTCGGAGTTGCGATATTAAATTAGCT-AACTCAAACAAAATTG
1 TGATCTTAAATC-G-AATGAACTT-AG-GTTGCGATATTAAATCAGCTAAACT-TAATAATATTG
*
62297026 TTCA
61 TT-G
** * *
62297030 TGATCTTAAATCGAATGAACTTAGGTTGCGATCCTAAATCAACTAACCTTAATAATATTAGTTG
1 TGATCTTAAATCGAATGAACTTAGGTTGCGATATTAAATCAGCTAAACTTAATAATATT-GTTG
* * * * * * *
62297094 CGATCTTAAAT--AA-GCAAGTTATTCGAGTTACGATCTTAAGTTAGCT-AACTTAAATAAAATT
1 TGATCTTAAATCGAATG-AACTTA---G-GTTGCGATATTAAATCAGCTAAACTT-AATAATATT
*
62297155 GTTCA
60 GTT-G
* * * * * * *
62297160 TGATTTTAAATTGAGTGAACTTAGGTTGCGATCTTAAATCAGTTAACCTTAATAATATCAGTTG
1 TGATCTTAAATCGAATGAACTTAGGTTGCGATATTAAATCAGCTAAACTTAATAATAT-TGTTG
62297224 TGATCTTAAATC
1 TGATCTTAAATC
62297236 AACAAGTTGT
Statistics
Matches: 483, Mismatches: 134, Indels: 96
0.68 0.19 0.13
Matches are distributed among these distances:
61 1 0.00
62 7 0.01
63 8 0.02
64 185 0.38
65 60 0.12
66 105 0.22
67 103 0.21
68 13 0.03
69 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.36
Consensus pattern (63 bp):
TGATCTTAAATCGAATGAACTTAGGTTGCGATATTAAATCAGCTAAACTTAATAATATTGTTG
Found at i:62296778 original size:131 final size:131
Alignment explanation
Indices: 62296503--62297294 Score: 944
Period size: 131 Copynumber: 6.1 Consensus size: 131
62296493 AGTGAGATTA
* * * *
62296503 TTCATGATCTTAAATC-AAGTGAACTTTGGTTGCGATCTTGAATCATCTAACCTTAATAATATTA
1 TTCATGATCTTAAATCGAA-TGAACTTAGGTTGCGATCTTAAATCAACTAACCTTAATAATATCA
** * * * * * * *
62296567 ACTGCGATCTTAAATCA-AAAGTTCTTCAAAATTGCAATCTTAAATCAGCTAACTCAAATAAAAG
65 GTTGTGATCTTAAATCAGCAAGTTGTTCAGAGTTGCGATCTTAAATCAGCTAACTCAAATAAAAT
*
62296631 TA
130 TG
* * * * **
62296633 TTCTTGATCTTAAATCGAATGAACTTAGGTTGCGATATTAAACCAACTAAACTTAATAATATTGG
1 TTCATGATCTTAAATCGAATGAACTTAGGTTGCGATCTTAAATCAACTAACCTTAATAATATCAG
* ** ** * * * *
62296698 TTGTGACCTTAAATCAGTGAGTTGTTTGGAGTTGCAATTTTAAATCAGCTAACTCGAATAAATTT
66 TTGTGATCTTAAATCAGCAAGTTGTTCAGAGTTGCGATCTTAAATCAGCTAACTCAAATAAAATT
62296763 G
131 G
* *
62296764 TTCATGATCTTAAATTGAATGAACTTAGGTTGGGATCTTAAATCAACTAACCTTAATAATATC-G
1 TTCATGATCTTAAATCGAATGAACTTAGGTTGCGATCTTAAATCAACTAACCTTAATAATATCAG
* ** * * * * *
62296828 ATTGTGATCTTAAATTAGTGAGTTATTTAGAGTTACGATATTAAATCAGCTAACTCGAATAAAAT
66 -TTGTGATCTTAAATCAGCAAGTTGTTCAGAGTTGCGATCTTAAATCAGCTAACTCAAATAAAAT
62296893 TG
130 TG
* * * * *
62296895 TTCTTGGTCTTAAATCAAAAGAACTTAGGTTGCGATCTTAAATCAGCTAACCTTAATAATATCAG
1 TTCATGATCTTAAATCGAATGAACTTAGGTTGCGATCTTAAATCAACTAACCTTAATAATATCAG
* * * * *
62296960 TTGTGATCTTAAATCAGCGAGTTGTTCGGAGTTGCGATATTAAATTAGCTAACTCAAACAAAATT
66 TTGTGATCTTAAATCAGCAAGTTGTTCAGAGTTGCGATCTTAAATCAGCTAACTCAAATAAAATT
62297025 G
131 G
* *
62297026 TTCATGATCTTAAATCGAATGAACTTAGGTTGCGATCCTAAATCAACTAACCTTAATAATATTAG
1 TTCATGATCTTAAATCGAATGAACTTAGGTTGCGATCTTAAATCAACTAACCTTAATAATATCAG
* * * * * * *
62297091 TTGCGATCTTAAATAAGCAAGTTATTC-GAGTTACGATCTTAAGTTAGCTAACTTAAATAAAATT
66 TTGTGATCTTAAATCAGCAAGTTGTTCAGAGTTGCGATCTTAAATCAGCTAACTCAAATAAAATT
62297155 G
131 G
* * * **
62297156 TTCATGATTTTAAATTGAGTGAACTTAGGTTGCGATCTTAAATCAGTTAACCTTAATAATATCAG
1 TTCATGATCTTAAATCGAATGAACTTAGGTTGCGATCTTAAATCAACTAACCTTAATAATATCAG
* * *
62297221 TTGTGATCTTAAATCAACAAGTTGTTCAGAGTTGTGATCTTAAATTAGCTAACTCAAATAAAATT
66 TTGTGATCTTAAATCAGCAAGTTGTTCAGAGTTGCGATCTTAAATCAGCTAACTCAAATAAAATT
62297286 G
131 G
62297287 TTCATGAT
1 TTCATGAT
62297295 AGATAAAATA
Statistics
Matches: 571, Mismatches: 86, Indels: 9
0.86 0.13 0.01
Matches are distributed among these distances:
130 181 0.32
131 389 0.68
132 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.36
Consensus pattern (131 bp):
TTCATGATCTTAAATCGAATGAACTTAGGTTGCGATCTTAAATCAACTAACCTTAATAATATCAG
TTGTGATCTTAAATCAGCAAGTTGTTCAGAGTTGCGATCTTAAATCAGCTAACTCAAATAAAATT
G
Found at i:62300972 original size:150 final size:150
Alignment explanation
Indices: 62300701--62301000 Score: 591
Period size: 150 Copynumber: 2.0 Consensus size: 150
62300691 AAATTTATAC
62300701 ATGTCCAAAGGGTCCACGACCCACAACAAACGGGTAGTCCTATACATGCCATTTCGAAGTTCAAC
1 ATGTCCAAAGGGTCCACGACCCACAACAAACGGGTAGTCCTATACATGCCATTTCGAAGTTCAAC
62300766 CATAATTGTACCAAAAGGGGGCTTTGATAGTGTGGGCGACTTTGACCTCAAGATCCCGAGTCCGA
66 CATAATTGTACCAAAAGGGGGCTTTGATAGTGTGGGCGACTTTGACCTCAAGATCCCGAGTCCGA
62300831 TAGCTGGAGAACCAAATCTA
131 TAGCTGGAGAACCAAATCTA
*
62300851 ATGTCCAAAGGGTCCTCGACCCACAACAAACGGGTAGTCCTATACATGCCATTTCGAAGTTCAAC
1 ATGTCCAAAGGGTCCACGACCCACAACAAACGGGTAGTCCTATACATGCCATTTCGAAGTTCAAC
62300916 CATAATTGTACCAAAAGGGGGCTTTGATAGTGTGGGCGACTTTGACCTCAAGATCCCGAGTCCGA
66 CATAATTGTACCAAAAGGGGGCTTTGATAGTGTGGGCGACTTTGACCTCAAGATCCCGAGTCCGA
62300981 TAGCTGGAGAACCAAATCTA
131 TAGCTGGAGAACCAAATCTA
62301001 TAAAACAGAG
Statistics
Matches: 149, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 149 1.00
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (150 bp):
ATGTCCAAAGGGTCCACGACCCACAACAAACGGGTAGTCCTATACATGCCATTTCGAAGTTCAAC
CATAATTGTACCAAAAGGGGGCTTTGATAGTGTGGGCGACTTTGACCTCAAGATCCCGAGTCCGA
TAGCTGGAGAACCAAATCTA
Found at i:62301418 original size:40 final size:40
Alignment explanation
Indices: 62301374--62302266 Score: 1707
Period size: 40 Copynumber: 22.3 Consensus size: 40
62301364 GCTCCTCGTT
* * * *
62301374 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGCCTTAACCCGGATT-TAGTAACTCGCA
*
62301414 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
*
62301454 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
62301494 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
62301534 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
62301574 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
62301614 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
62301654 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
62301694 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
62301734 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
62301774 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
62301814 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
62301854 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
62301894 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
62301934 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
62301974 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
62302014 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
62302054 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
62302094 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
62302134 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
*
62302174 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
62302214 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
62302254 CAAATGCCTTCGG
1 CAAATGCCTTCGG
62302267 ATCTTAGTCT
Statistics
Matches: 846, Mismatches: 6, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
40 844 1.00
41 2 0.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
Found at i:62310248 original size:39 final size:39
Alignment explanation
Indices: 62310131--62311092 Score: 1736
Period size: 39 Copynumber: 24.6 Consensus size: 39
62310121 GCTCCTCGTT
* *
62310131 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
62310171 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
62310211 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
62310250 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
62310289 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
62310328 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
62310367 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
62310406 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
62310445 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
62310484 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
62310523 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
62310562 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
62310601 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
62310640 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
62310679 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
62310718 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
62310757 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
62310796 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
62310835 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
62310874 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
62310913 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
62310952 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
62310991 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * * *
62311030 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCACCTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATCTCGCA
62311071 C-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGG-CTTAGCCCG
62311093 AACATCATCC
Statistics
Matches: 904, Mismatches: 12, Indels: 13
0.97 0.01 0.01
Matches are distributed among these distances:
39 832 0.92
40 60 0.07
41 12 0.01
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:62312129 original size:55 final size:56
Alignment explanation
Indices: 62312065--62312176 Score: 208
Period size: 55 Copynumber: 2.0 Consensus size: 56
62312055 TCATGGAACA
*
62312065 TCATCAAACATACCTTAGCCTAGCTACATGCATGGCCGAATCTCTTC-ACCTTTCT
1 TCATCAAACATACCTTAGCCTAGCTACATGCATGGCCGAACCTCTTCAACCTTTCT
62312120 TCATCAAACATACCTTAGCCTAGCTACATGCATGGCCGAACCTCTTCAACCTTTCT
1 TCATCAAACATACCTTAGCCTAGCTACATGCATGGCCGAACCTCTTCAACCTTTCT
62312176 T
1 T
62312177 TTTCCTTCCT
Statistics
Matches: 55, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
55 46 0.84
56 9 0.16
ACGTcount: A:0.26, C:0.33, G:0.11, T:0.30
Consensus pattern (56 bp):
TCATCAAACATACCTTAGCCTAGCTACATGCATGGCCGAACCTCTTCAACCTTTCT
Found at i:62324512 original size:49 final size:49
Alignment explanation
Indices: 62324320--62324542 Score: 257
Period size: 49 Copynumber: 4.5 Consensus size: 49
62324310 GTACGCATAA
* ** * *
62324320 TAGCCTGCACATAGTACTACACATGCGACCAATTATTCGGTACATGTAG
1 TAGCCTGCACTTAGTACTACACACACGACCAATTATCCGGTACACGTAG
* ** * *
62324369 TAGCCTGCACTTAGTACTACACACATGACCTAACCATCTGATACACGTAG
1 TAGCCTGCACTTAGTACTACACACACGACC-AATTATCCGGTACACGTAG
* * * * *
62324419 TAGCCTGCACTTAGTACTACACACATGATCGAAGTTATCGGGTACGCATAG
1 TAGCCTGCACTTAGTACTACACACACGA-CCAA-TTATCCGGTACACGTAG
**
62324470 TAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TAGCCTGCACTTAGTACTACACACACGACCAATTATCCGGTACACGTAG
*
62324519 GAGCCTGCACTTAGTACTACACAC
1 TAGCCTGCACTTAGTACTACACAC
62324543 GTGACCTCAC
Statistics
Matches: 145, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 62 0.43
50 46 0.32
51 37 0.26
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGCCTGCACTTAGTACTACACACACGACCAATTATCCGGTACACGTAG
Found at i:62327628 original size:75 final size:75
Alignment explanation
Indices: 62327505--62327655 Score: 266
Period size: 75 Copynumber: 2.0 Consensus size: 75
62327495 ATGTCAATTT
*
62327505 TGGACTAAATTATAAAATGTGGAAGTTTAATGGTTAAAATGTGAAATAAATTAGAAATATGGGAT
1 TGGACTAAATTATAAAATATGGAAGTTTAATGGTTAAAATGTGAAATAAATTAGAAATATGGGAT
62327570 GATAGTAATA
66 GATAGTAATA
* * *
62327580 TGGACTAAATTGTAAAATATGGAAGTTTAGTGGTTAAAATGTGAAATAAATTAGAAATATGGGCT
1 TGGACTAAATTATAAAATATGGAAGTTTAATGGTTAAAATGTGAAATAAATTAGAAATATGGGAT
62327645 GATAGTAATA
66 GATAGTAATA
62327655 T
1 T
62327656 ATGGAAAATG
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 72 1.00
ACGTcount: A:0.44, C:0.02, G:0.22, T:0.32
Consensus pattern (75 bp):
TGGACTAAATTATAAAATATGGAAGTTTAATGGTTAAAATGTGAAATAAATTAGAAATATGGGAT
GATAGTAATA
Found at i:62328165 original size:43 final size:43
Alignment explanation
Indices: 62328112--62328215 Score: 145
Period size: 43 Copynumber: 2.4 Consensus size: 43
62328102 TCTGAGATGA
* * *
62328112 GATTATGTGTAAGACCATGTCTGGGACATTGGCATCATTATGT
1 GATTACGTGTAAGACCATGTCCGGGACATTGGCATCATTATAT
* *
62328155 GATTACGTGTAAGACTATGTCCGGGACATTGGCATCGTTATAT
1 GATTACGTGTAAGACCATGTCCGGGACATTGGCATCATTATAT
* *
62328198 GATTTCGTATAAGACCAT
1 GATTACGTGTAAGACCAT
62328216 AGCCGGGCTA
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCCGGGACATTGGCATCATTATAT
Found at i:62328232 original size:43 final size:43
Alignment explanation
Indices: 62328112--62328232 Score: 120
Period size: 43 Copynumber: 2.8 Consensus size: 43
62328102 TCTGAGATGA
* * * * *
62328112 GATTATGTGTAAGACCATGTCTGGGACATTGGCATCATTATGT
1 GATTACGTATAAGACCATGTCCGGGACATCGGCATCATTATAT
* * * *
62328155 GATTACGTGTAAGACTATGTCCGGGACATTGGCATCGTTATAT
1 GATTACGTATAAGACCATGTCCGGGACATCGGCATCATTATAT
*
62328198 GATTTCGTATAAGACCATAG-CCGGG-CTATCGGCAT
1 GATTACGTATAAGACCAT-GTCCGGGAC-ATCGGCAT
62328233 TGATATGTGA
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 1 0.01
43 65 0.97
44 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
GATTACGTATAAGACCATGTCCGGGACATCGGCATCATTATAT
Found at i:62330681 original size:27 final size:27
Alignment explanation
Indices: 62330621--62330686 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 27
62330611 GGTGCCGAAT
* *
62330621 TCTCTTTTTGGCATTTGGGTTTGTTTT
1 TCTCTTTTTGGCATTTGGGTTTCTTTC
* *
62330648 TCCCTTTTT-GCATTTTGGTTTCTTTC
1 TCTCTTTTTGGCATTTGGGTTTCTTTC
62330674 TCT-TCTTTTGGCA
1 TCTCT-TTTTGGCA
62330687 ATTACGTGCA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
25 1 0.03
26 20 0.62
27 11 0.34
ACGTcount: A:0.05, C:0.18, G:0.17, T:0.61
Consensus pattern (27 bp):
TCTCTTTTTGGCATTTGGGTTTCTTTC
Found at i:62336061 original size:31 final size:31
Alignment explanation
Indices: 62336018--62336103 Score: 147
Period size: 31 Copynumber: 2.8 Consensus size: 31
62336008 TCAATCTTAG
62336018 CATAT-ACTGGGCCGAAGCCTTTACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* *
62336048 CATATCACTGGGCCAAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
62336079 CATATCACTGGGCCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
62336104 TATACCAATA
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 5 0.10
31 46 0.90
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:62336348 original size:25 final size:25
Alignment explanation
Indices: 62336320--62336391 Score: 94
Period size: 25 Copynumber: 2.9 Consensus size: 25
62336310 ATCTTTTAAT
62336320 AACTGGGGCAAAGCCCGTTTTGATA
1 AACTGGGGCAAAGCCCGTTTTGATA
*
62336345 AACTGGGGCAAAAGCCC-TTTTCGGTA
1 AACTGGGGC-AAAGCCCGTTTT-GATA
*
62336371 AACTAGGGCAAAG-CCGTTTTG
1 AACTGGGGCAAAGCCCGTTTTG
62336392 CACTTCCTCC
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
24 3 0.07
25 21 0.50
26 18 0.43
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCGTTTTGATA
Found at i:62336456 original size:18 final size:19
Alignment explanation
Indices: 62336433--62336470 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
62336423 GCATAAATGA
62336433 ATACAT-CATGTGCATATC
1 ATACATACATGTGCATATC
62336451 ATACATAACATGTGCATATC
1 ATACAT-ACATGTGCATATC
62336471 GTATCAAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
20 12 0.67
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.32
Consensus pattern (19 bp):
ATACATACATGTGCATATC
Found at i:62336550 original size:25 final size:25
Alignment explanation
Indices: 62336521--62336568 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
62336511 ATAGTTAAAC
* * *
62336521 CCTAGGGGTAAAATAGTCATTTTTA
1 CCTAGGGGCAAAACAATCATTTTTA
62336546 CCTAGGGGCAAAACAATCATTTT
1 CCTAGGGGCAAAACAATCATTTT
62336569 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (25 bp):
CCTAGGGGCAAAACAATCATTTTTA
Found at i:62338115 original size:57 final size:57
Alignment explanation
Indices: 62338051--62338165 Score: 189
Period size: 57 Copynumber: 2.0 Consensus size: 57
62338041 TCTTCCCCCA
62338051 ACCACTTACATGACACCTTTTTAGCTCCC-AGGGGGCG-CAACTTAGCCACTTTACCAG
1 ACCACTTACATGACACCTTTTTAGCTCCCTA-GGGGCGTC-ACTTAGCCACTTTACCAG
*
62338108 ACCACTTACATGACACCTTTTTAGCTCCCTAGTGGCGTCACTTAGCCACTTTACCAG
1 ACCACTTACATGACACCTTTTTAGCTCCCTAGGGGCGTCACTTAGCCACTTTACCAG
62338165 A
1 A
62338166 GGCTCTTTTT
Statistics
Matches: 55, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
57 53 0.96
58 2 0.04
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (57 bp):
ACCACTTACATGACACCTTTTTAGCTCCCTAGGGGCGTCACTTAGCCACTTTACCAG
Found at i:62347230 original size:31 final size:31
Alignment explanation
Indices: 62347181--62347266 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
62347171 TCAATCTCAG
62347181 CATAT-ACTGGGCCGAAGCCTTTACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* * *
62347211 CATATCACTAGGCCAAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
62347242 CATATCACTGGGCCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
62347267 TGTACCAATA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
30 5 0.10
31 44 0.90
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:62347529 original size:26 final size:25
Alignment explanation
Indices: 62347484--62347554 Score: 97
Period size: 26 Copynumber: 2.8 Consensus size: 25
62347474 CTCTTTTAAT
* *
62347484 AACTAGGGCAAAGCCCTTTTTGATC
1 AACTAGGGCAAAGCCCTTTTCGATA
* *
62347509 AACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTAGGGC-AAAGCCCTTTTCGATA
62347535 AACTAGGGCAAAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
62347555 GCACTTCCTC
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 19 0.47
26 21 0.52
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGATA
Found at i:62347713 original size:25 final size:25
Alignment explanation
Indices: 62347685--62347732 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
62347675 ATAATTAAAC
* **
62347685 CCTAGGGGTAAAATGGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
62347710 CCTAGGGGCAAAACAGTCATTTT
1 CCTAGGGGCAAAACAGTCATTTT
62347733 CATGTTTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:62352158 original size:43 final size:44
Alignment explanation
Indices: 62352105--62352251 Score: 160
Period size: 43 Copynumber: 3.4 Consensus size: 44
62352095 TTCGAGATGA
*
62352105 GATTATGTGTAAGACCATGTTTGGGACATTGGCAT-GATTATGT
1 GATTACGTGTAAGACCATGTTTGGGACATTGGCATCGATTATGT
* * *
62352148 GATTACGTGTAAGACCATCTCTGGGACATTGGCATCG-TTATAT
1 GATTACGTGTAAGACCATGTTTGGGACATTGGCATCGATTATGT
* * *
62352191 AATTTCGTGTAAGACCATAG-TTGGG-CTATCGGCATCGA-TATGT
1 GATTACGTGTAAGACCAT-GTTTGGGAC-ATTGGCATCGATTATGT
* *
62352234 GATAACATGTAAGACCAT
1 GATTACGTGTAAGACCAT
62352252 ATCTTGAATA
Statistics
Matches: 86, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
42 1 0.01
43 84 0.98
44 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (44 bp):
GATTACGTGTAAGACCATGTTTGGGACATTGGCATCGATTATGT
Found at i:62355284 original size:43 final size:44
Alignment explanation
Indices: 62355231--62355377 Score: 160
Period size: 43 Copynumber: 3.4 Consensus size: 44
62355221 TTCGAGATGA
*
62355231 GATTATGTGTAAGACCATGTTTGGGACATTGGCAT-GATTATGT
1 GATTACGTGTAAGACCATGTTTGGGACATTGGCATCGATTATGT
* * *
62355274 GATTACGTGTAAGACCATCTCTGGGACATTGGCATCG-TTATAT
1 GATTACGTGTAAGACCATGTTTGGGACATTGGCATCGATTATGT
* * *
62355317 AATTTCGTGTAAGACCATAG-TTGGG-CTATCGGCATCGA-TATGT
1 GATTACGTGTAAGACCAT-GTTTGGGAC-ATTGGCATCGATTATGT
* *
62355360 GATAACATGTAAGACCAT
1 GATTACGTGTAAGACCAT
62355378 ATCTTGAATA
Statistics
Matches: 86, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
42 1 0.01
43 84 0.98
44 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (44 bp):
GATTACGTGTAAGACCATGTTTGGGACATTGGCATCGATTATGT
Found at i:62357522 original size:50 final size:49
Alignment explanation
Indices: 62357407--62357537 Score: 153
Period size: 50 Copynumber: 2.7 Consensus size: 49
62357397 AGTATAATGC
* *
62357407 CGATGCCATGACCCAGACATGGTCTTACA-T-AGGCTCAGCTATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACGCTCAGCTATCAAGT
* * *
62357454 CGATGCCATGTCCTAGACATGGTCTTACACTGACTCTCA-CATATC-CGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACGCTCAGC-TATCAAGT
*
62357502 GCTGATGCCATGTCCCAGACATGGTCTTAGACTGAC
1 -C-GATGCCATGTCCCAGACATGGTCTTACACTGAC
62357538 ACATTTTGTA
Statistics
Matches: 72, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
47 27 0.38
48 4 0.06
49 10 0.14
50 31 0.43
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACGCTCAGCTATCAAGT
Found at i:62357604 original size:46 final size:46
Alignment explanation
Indices: 62357550--62357718 Score: 171
Period size: 46 Copynumber: 3.6 Consensus size: 46
62357540 ATTTTGTAGC
* * *
62357550 CGATGCATGTTCTAGACATGTCTTACACTGGCT-TACATCTCGAGGT
1 CGATGCATGTCCTAGACATGTCTTACACTGGCTCT-CGTATCGAGGT
* * * * * * * *
62357596 CGATGCATGTCCTAGGCATGTCTTACACTGGATGTTGTTTCAATGC
1 CGATGCATGTCCTAGACATGTCTTACACTGGCTCTCGTATCGAGGT
* *
62357642 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGTAAT-GTGGT
1 CGATG-CATGTCCTAGACAT-GTCTTACACTGGCTCTCGT-ATCGAGGT
62357690 CGATGCATGTCCTAGACATGTCTTACACT
1 CGATGCATGTCCTAGACATGTCTTACACT
62357719 AGCATATAAT
Statistics
Matches: 99, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
46 50 0.51
47 26 0.26
48 22 0.22
49 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.22, T:0.32
Consensus pattern (46 bp):
CGATGCATGTCCTAGACATGTCTTACACTGGCTCTCGTATCGAGGT
Found at i:62357667 original size:94 final size:92
Alignment explanation
Indices: 62357548--62357718 Score: 238
Period size: 94 Copynumber: 1.8 Consensus size: 92
62357538 ACATTTTGTA
* * *
62357548 GCCGATGCATGTTCTAGACATGTCTTACACTGGCT-TACAT-CTCGAGGTCGATGCATGTCCTAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATAAT-GAGGTCGATGCATGTCCTAG
*
62357611 GCATGTCTTACACTGGATGTTGTTTCAAT
64 ACATGTCTTACACTGGATGTTGTTTCAAT
* *
62357640 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGTAATGTGGTCGATGCATGTCCTAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGAGGTCGATGCATGTCCTAG
62357705 ACATGTCTTACACT
64 ACATGTCTTACACT
62357719 AGCATATAAT
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
92 7 0.10
93 12 0.17
94 48 0.70
95 2 0.03
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGAGGTCGATGCATGTCCTAGAC
ATGTCTTACACTGGATGTTGTTTCAAT
Found at i:62358442 original size:13 final size:13
Alignment explanation
Indices: 62358424--62358448 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62358414 CTAAAAGTGC
62358424 AAAAATCATCAAG
1 AAAAATCATCAAG
62358437 AAAAATCATCAA
1 AAAAATCATCAA
62358449 AATAATTACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:62359585 original size:18 final size:18
Alignment explanation
Indices: 62359562--62359603 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
62359552 AATGAATTGT
62359562 ATTAAATTGCTTGATGTG
1 ATTAAATTGCTTGATGTG
62359580 ATTAAATTGCTTGATGTG
1 ATTAAATTGCTTGATGTG
62359598 ATTAAA
1 ATTAAA
62359604 AATGCATATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.33, C:0.05, G:0.19, T:0.43
Consensus pattern (18 bp):
ATTAAATTGCTTGATGTG
Found at i:62360795 original size:47 final size:47
Alignment explanation
Indices: 62360742--62361199 Score: 889
Period size: 47 Copynumber: 9.7 Consensus size: 47
62360732 TTAGGATTCT
62360742 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62360789 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62360836 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62360883 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62360930 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62360977 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62361024 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62361071 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
62361118 ATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
62361165 ATGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
62361200 TCCCGAAGGG
Statistics
Matches: 407, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 407 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:62361374 original size:37 final size:37
Alignment explanation
Indices: 62361318--62361396 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
62361308 CCGAGCTCTA
* * *
62361318 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
62361355 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
62361392 AAGAC
1 AAGAC
62361397 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:62362531 original size:32 final size:32
Alignment explanation
Indices: 62362490--62362554 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
62362480 CCTATAACAT
62362490 GGGAGACTTTGACTAATAAACTGTACTAATTG
1 GGGAGACTTTGACTAATAAACTGTACTAATTG
62362522 GGGAGACTTTGACTAATAAACTGTACTAATTG
1 GGGAGACTTTGACTAATAAACTGTACTAATTG
62362554 G
1 G
62362555 CCCAACCAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.34, C:0.12, G:0.23, T:0.31
Consensus pattern (32 bp):
GGGAGACTTTGACTAATAAACTGTACTAATTG
Found at i:62363343 original size:43 final size:43
Alignment explanation
Indices: 62363295--62363395 Score: 202
Period size: 43 Copynumber: 2.3 Consensus size: 43
62363285 GGTTTTCAGA
62363295 ACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGGC
1 ACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGGC
62363338 ACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGGC
1 ACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGGC
62363381 ACTAAGTGTGCGGGC
1 ACTAAGTGTGCGGGC
62363396 TTGAAATGCA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.23, C:0.15, G:0.36, T:0.27
Consensus pattern (43 bp):
ACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGGC
Found at i:62363412 original size:29 final size:29
Alignment explanation
Indices: 62363377--62363450 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
62363367 GTTGTGAGAT
* *
62363377 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
62363406 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
62363435 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
62363451 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:62363819 original size:40 final size:40
Alignment explanation
Indices: 62363798--62363924 Score: 184
Period size: 40 Copynumber: 3.2 Consensus size: 40
62363788 CTAAGTGACC
62363798 ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
1 ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
*
62363838 GTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
1 ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
*** * *
62363878 ATATCCGTG-CTAAACCCCGAAGAGCATTCGTGCTGGTGTT
1 ATATCCG-GACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
62363918 ATATCCG
1 ATATCCG
62363925 TGCTAAACCC
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
40 78 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (40 bp):
ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
Found at i:62363925 original size:40 final size:40
Alignment explanation
Indices: 62363814--62363957 Score: 191
Period size: 40 Copynumber: 3.6 Consensus size: 40
62363804 GGACTAAGTT
* ***
62363814 CCGAAGAGCATTCGTGCTAGTGATGTATCCG-GACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATATATCCGTG-CTAAACC
62363854 CCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACC
1 CCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACC
* *
62363894 CCGAAGAGCATTCGTGCTGGTGTTATATCCGTGCTAAACC
1 CCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACC
* * *
62363934 CCGAAGAGCAATCATGCTGGTGAT
1 CCGAAGAGCATTCGTGCTAGTGAT
62363958 GTGTATTCGG
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
40 93 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACC
Found at i:62367554 original size:47 final size:47
Alignment explanation
Indices: 62367496--62367901 Score: 767
Period size: 47 Copynumber: 8.6 Consensus size: 47
62367486 CAGCCAAGAC
*
62367496 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
62367543 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62367590 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62367637 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62367684 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62367731 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62367778 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62367825 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
62367872 AGTGTATATATATGTGATAAGGCCGAATGG
1 AGTG--TATATATGTGATAAGGCCTAATGG
62367902 AACAACTATG
Statistics
Matches: 355, Mismatches: 2, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
47 332 0.94
49 23 0.06
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:62375566 original size:30 final size:29
Alignment explanation
Indices: 62375516--62375576 Score: 95
Period size: 30 Copynumber: 2.1 Consensus size: 29
62375506 CAAGTAGCCG
* *
62375516 AAGCTAGTTAACTCGCACACTTAGTGCCA
1 AAGCTAGTTAAATAGCACACTTAGTGCCA
62375545 AAGCTAGTTTAAATAGCACACTTAGTGCCA
1 AAGCTAG-TTAAATAGCACACTTAGTGCCA
62375575 AA
1 AA
62375577 ACTTCCGTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 7 0.24
30 22 0.76
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (29 bp):
AAGCTAGTTAAATAGCACACTTAGTGCCA
Found at i:62380141 original size:27 final size:26
Alignment explanation
Indices: 62380085--62380235 Score: 115
Period size: 27 Copynumber: 5.6 Consensus size: 26
62380075 AAATTGTACA
* * *
62380085 GCACTAAGTGTGCG-ATTCTACTTTGTT
1 GCACTAAGTGTGCGAAAT-GACTATG-T
*
62380112 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAAATGACTATG-T
* * *
62380139 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAAATGACTATG-T
*
62380166 GCACTAAGTGTGCGAGATGGACTATGT
1 GCACTAAGTGTGCGAAAT-GACTATGT
** * *
62380193 GGCACTAAGTGTGCGATTTGATTACGT
1 -GCACTAAGTGTGCGAAATGACTATGT
*
62380220 GGCACTAAATGTGCGA
1 -GCACTAAGTGTGCGA
62380236 GTTGATTATA
Statistics
Matches: 102, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
27 78 0.76
28 24 0.24
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
GCACTAAGTGTGCGAAATGACTATGT
Found at i:62380145 original size:54 final size:54
Alignment explanation
Indices: 62380085--62380210 Score: 148
Period size: 54 Copynumber: 2.3 Consensus size: 54
62380075 AAATTGTACA
* ** **
62380085 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAAT-GAATATGAT-
1 GCACTAAGTGTGCGATT-GACCATGCGGCACTAAGTGTGCGAAATGGAATATG-TG
* *
62380139 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCG-ATTGACCATGCGGCACTAAGTGTGCGAAATGGAATATGTG
62380194 GCACTAAGTGTGCGATT
1 GCACTAAGTGTGCGATT
62380211 TGATTACGTG
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
54 39 0.63
55 23 0.37
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGATTGACCATGCGGCACTAAGTGTGCGAAATGGAATATGTG
Found at i:62380208 original size:55 final size:54
Alignment explanation
Indices: 62380112--62380261 Score: 160
Period size: 55 Copynumber: 2.8 Consensus size: 54
62380102 CTACTTTGTT
* *
62380112 GCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGATGAATATGATGCACTAAGTGTGCGAATTGACCACGCG
* * ** *
62380166 GCACTAAGTGTGCGAGATGGACTATG-TGGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAGAT-GAATATGAT-GCACTAAGTGTGCGAATTGACCACGCG
* * * *
62380221 GCACTAAATGTGCGAGTTGATTAT-ATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGAGATGAATATGAT-GCACTAAGTGTGCG
62380262 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
54 37 0.46
55 44 0.54
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.27
Consensus pattern (54 bp):
GCACTAAGTGTGCGAGATGAATATGATGCACTAAGTGTGCGAATTGACCACGCG
Found at i:62380225 original size:82 final size:81
Alignment explanation
Indices: 62380085--62380240 Score: 188
Period size: 82 Copynumber: 1.9 Consensus size: 81
62380075 AAATTGTACA
* * * * * *
62380085 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
62380150 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
62380166 GCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAAT
1 GCACTAAGTGTGCGA-ATCGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAAT
*
62380230 GTGCGAGTTGA
64 GTGCGAATTGA
62380241 TTATATAGCA
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
81 16 0.26
82 46 0.74
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:62380240 original size:27 final size:27
Alignment explanation
Indices: 62380112--62380261 Score: 113
Period size: 27 Copynumber: 5.5 Consensus size: 27
62380102 CTACTTTGTT
** * *
62380112 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAGTTGATTACG-TG
* ** * *
62380139 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGTTGATTACGTG
* * *
62380166 GCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCGAG-TTGATTACGTG
*
62380194 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAGTTGATTACGTG
* ** *
62380221 GCACTAAATGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGTTGATTACGTG
*
62380248 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
62380262 GGCTCAATAT
Statistics
Matches: 102, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
27 79 0.77
28 23 0.23
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.27
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGTTGATTACGTG
Found at i:62387653 original size:27 final size:27
Alignment explanation
Indices: 62387622--62387799 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
62387612 TAAATTGTAC
62387622 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
62387649 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62387675 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
62387703 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
62387731 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62387758 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62387785 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
62387800 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:62387736 original size:82 final size:81
Alignment explanation
Indices: 62387623--62387778 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
62387613 AAATTGTACA
* *
62387623 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
62387687 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
62387704 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
62387769 TGCGAGTTGA
65 TGCGAATTGA
62387779 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:62387790 original size:82 final size:81
Alignment explanation
Indices: 62387619--62387799 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
62387609 GATTAAATTG
* *
62387619 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
62387684 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
62387700 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
62387764 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
62387782 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
62387800 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:62387810 original size:27 final size:27
Alignment explanation
Indices: 62387704--62387810 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
62387694 TGACCATGCG
* * * *
62387704 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
62387732 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
62387759 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
62387786 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
62387811 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:62393510 original size:29 final size:30
Alignment explanation
Indices: 62393476--62393536 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
62393466 CAAGTAGTCG
62393476 AAGCTAG-TTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
*
62393505 AAGCTAGTTTAAATCTCACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
62393535 AA
1 AA
62393537 ACTTCCGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.23
30 23 0.77
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (30 bp):
AAGCTAGTTTAAATCGCACACTTAGTGCCA
Found at i:62404849 original size:19 final size:20
Alignment explanation
Indices: 62404833--62404869 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
62404823 AGTGGGAGGT
*
62404833 AGTAAA-AATTTTGGGAGAA
1 AGTAAAGAAGTTTGGGAGAA
62404852 AGTAAAGAAGTTTGGGAG
1 AGTAAAGAAGTTTGGGAG
62404870 TTTTGTGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.43, C:0.00, G:0.32, T:0.24
Consensus pattern (20 bp):
AGTAAAGAAGTTTGGGAGAA
Found at i:62404974 original size:24 final size:22
Alignment explanation
Indices: 62404922--62404974 Score: 52
Period size: 24 Copynumber: 2.3 Consensus size: 22
62404912 TATTCAAATT
* *
62404922 ATTCAAATTATTTGAATTCAAA
1 ATTCAAATTATTCGAACTCAAA
**
62404944 AACCAAACTTGATTCGAACTCAAA
1 ATTCAAA-TT-ATTCGAACTCAAA
62404968 ATTCAAA
1 ATTCAAA
62404975 ACAGAAAAAT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
22 5 0.22
23 2 0.09
24 16 0.70
ACGTcount: A:0.47, C:0.17, G:0.06, T:0.30
Consensus pattern (22 bp):
ATTCAAATTATTCGAACTCAAA
Found at i:62407601 original size:25 final size:25
Alignment explanation
Indices: 62407565--62407633 Score: 84
Period size: 25 Copynumber: 2.8 Consensus size: 25
62407555 GTTACGGATT
* *
62407565 TCAGCTCTTATGAGCTTATCGATAC
1 TCAGCTCATATGAGCTTACCGATAC
* *
62407590 TCAGCTCATATGAGCTTACCGTTAT
1 TCAGCTCATATGAGCTTACCGATAC
* *
62407615 TCAGCTCAGAGGAGCTTAC
1 TCAGCTCATATGAGCTTAC
62407634 TGTTTACAGC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (25 bp):
TCAGCTCATATGAGCTTACCGATAC
Found at i:62418268 original size:19 final size:20
Alignment explanation
Indices: 62418244--62418281 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
62418234 GGTACCACCA
62418244 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
62418263 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
62418282 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:62425090 original size:40 final size:39
Alignment explanation
Indices: 62425046--62425150 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
62425036 AGTGACCATA
*
62425046 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
62425086 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
62425124 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGACTAAG-CCCGAAGGCATTTG
62425151 AACGAGTAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 32 0.55
40 24 0.41
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:62425107 original size:39 final size:40
Alignment explanation
Indices: 62425006--62425169 Score: 169
Period size: 40 Copynumber: 4.1 Consensus size: 40
62424996 TTGAATGATG
* *
62425006 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATA
*
62425046 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA
*
62425085 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
* * **
62425125 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATA-CTATA
62425165 TCCGG
1 TCCGG
62425170 TTAAATTCCG
Statistics
Matches: 106, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
39 36 0.34
40 59 0.56
41 10 0.09
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
Found at i:62425169 original size:79 final size:80
Alignment explanation
Indices: 62425006--62425156 Score: 191
Period size: 79 Copynumber: 1.9 Consensus size: 80
62424996 TTGAATGATG
*
62425006 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
62425071 GTGCGAGATACTAAT
66 GAACGAGATACTAAT
* * * * *
62425086 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
62425148 TTGAACGAG
64 TTGAACGAG
62425157 TAGCTATATC
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 42 0.69
80 18 0.30
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGATACTAAT
Found at i:62433178 original size:40 final size:40
Alignment explanation
Indices: 62432940--62433164 Score: 305
Period size: 40 Copynumber: 5.7 Consensus size: 40
62432930 TTGAATGATG
* * * *
62432940 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
62432980 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
62433020 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
62433059 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
62433099 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
62433140 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62433165 AACGAGTAGC
Statistics
Matches: 167, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
39 35 0.21
40 122 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:62433186 original size:119 final size:119
Alignment explanation
Indices: 62432940--62433197 Score: 301
Period size: 119 Copynumber: 2.2 Consensus size: 119
62432930 TTGAATGATG
* *
62432940 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
62433005 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
* * * **
62433059 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
62433122 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTAAA
* *
62433179 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
62433198 TACGTGATTT
Statistics
Matches: 119, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 32 0.27
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
Found at i:62438600 original size:21 final size:21
Alignment explanation
Indices: 62438576--62438620 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
62438566 ATTTTATGGA
62438576 ATTGATACTTGATATATGTAG
1 ATTGATACTTGATATATGTAG
62438597 ATTGATACTTGATATATGTAG
1 ATTGATACTTGATATATGTAG
62438618 ATT
1 ATT
62438621 TGACCATGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.33, C:0.04, G:0.18, T:0.44
Consensus pattern (21 bp):
ATTGATACTTGATATATGTAG
Found at i:62443636 original size:43 final size:44
Alignment explanation
Indices: 62443571--62443743 Score: 180
Period size: 43 Copynumber: 4.0 Consensus size: 44
62443561 AACTCGTATA
* * *
62443571 ATGCCAAC-GCCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACTGTCCCAGACATGGTCTTACACGTAATCAAATATCG
*
62443614 ATGCC-ACTGTCCCAGACATGGTCTTACACGAAATCAAATAT-G
1 ATGCCAACTGTCCCAGACATGGTCTTACACGTAATCAAATATCG
* * *
62443656 ATGCCGA-TGTCCCAGACATGGTCTTACACGTAAATCTCAA-ATCA
1 ATGCCAACTGTCCCAGACATGGTCTTACACGT-AATC-AAATATCG
* * *
62443700 ATTCCAAC-GTCCCAGACGTGGTCTTACACGAAAT-AACATATCG
1 ATGCCAACTGTCCCAGACATGGTCTTACACGTAATCAA-ATATCG
62443743 A
1 A
62443744 AATCCTATGT
Statistics
Matches: 109, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
41 1 0.01
42 32 0.29
43 48 0.44
44 28 0.26
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (44 bp):
ATGCCAACTGTCCCAGACATGGTCTTACACGTAATCAAATATCG
Found at i:62450306 original size:17 final size:16
Alignment explanation
Indices: 62450259--62450309 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 16
62450249 TAACTTTGAA
*
62450259 AATTTTATTTCCATTTT
1 AATTTTATTT-TATTTT
*
62450276 AATATTTTTTTTATTGTT
1 AAT-TTTATTTTATT-TT
62450294 AATTTTATTTTATTTT
1 AATTTTATTTTATTTT
62450310 TTAATAAGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
16 2 0.07
17 16 0.55
18 11 0.38
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.71
Consensus pattern (16 bp):
AATTTTATTTTATTTT
Found at i:62450313 original size:18 final size:18
Alignment explanation
Indices: 62450272--62450315 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
62450262 TTTATTTCCA
*
62450272 TTTTAATATTTTTTTTAT
1 TTTTAATATTTATTTTAT
*
62450290 TGTTAAT-TTTATTTTATT
1 TTTTAATATTTATTTTA-T
62450308 TTTTAATA
1 TTTTAATA
62450316 AGGGGGTCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (18 bp):
TTTTAATATTTATTTTAT
Found at i:62454202 original size:20 final size:20
Alignment explanation
Indices: 62454177--62454215 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
62454167 TGTATTTTTG
*
62454177 AAAAATTTCTTAAGTTATCT
1 AAAAATTTCGTAAGTTATCT
*
62454197 AAAAATTTCGTGAGTTATC
1 AAAAATTTCGTAAGTTATC
62454216 GGTTTAGTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.41
Consensus pattern (20 bp):
AAAAATTTCGTAAGTTATCT
Found at i:62454603 original size:32 final size:32
Alignment explanation
Indices: 62454566--62454629 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
62454556 ATTGGGAGTA
62454566 AGGAGATCCATTTGTTTGATGTATGATCACTC
1 AGGAGATCCATTTGTTTGATGTATGATCACTC
62454598 AGGAGATCCATTTGTTTGATGTATGATCACTC
1 AGGAGATCCATTTGTTTGATGTATGATCACTC
62454630 GATTAAGCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.38
Consensus pattern (32 bp):
AGGAGATCCATTTGTTTGATGTATGATCACTC
Found at i:62458462 original size:16 final size:16
Alignment explanation
Indices: 62458443--62458473 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
62458433 TTTAGGGGCA
62458443 AAAAATATAATTTTGT
1 AAAAATATAATTTTGT
*
62458459 AAAAATATGATTTTG
1 AAAAATATAATTTTG
62458474 AGTCAATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (16 bp):
AAAAATATAATTTTGT
Found at i:62465964 original size:11 final size:10
Alignment explanation
Indices: 62465948--62465982 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
62465938 GATGATGAAA
62465948 AAAGAAAAGAG
1 AAAGAAAA-AG
62465959 AAAGAAAAAG
1 AAAGAAAAAG
*
62465969 AAAAAAAAAG
1 AAAGAAAAAG
62465979 AAAG
1 AAAG
62465983 GCTCTCATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 14 0.64
11 8 0.36
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (10 bp):
AAAGAAAAAG
Found at i:62467297 original size:40 final size:40
Alignment explanation
Indices: 62467241--62467418 Score: 191
Period size: 40 Copynumber: 4.5 Consensus size: 40
62467231 TGGATGATAA
* * **
62467241 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGCT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* *
62467281 TCGGGCTAAGTCCCGAAGGCTTTTGTG-TGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTATAT
* *
62467321 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* * * *
62467361 CCGGGCTATGTCCCGAAGGCATTCGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATAT
* *
62467401 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
62467419 TACTTGGTTT
Statistics
Matches: 118, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
39 16 0.14
40 102 0.86
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:62473291 original size:31 final size:32
Alignment explanation
Indices: 62473234--62473295 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
62473224 ATGAAGTCAC
* *
62473234 CAGATATAGATATTGTGGCTATGCCACCAGAA
1 CAGATATAGATATTGTGGCGAAGCCACCAGAA
*
62473266 CAGATATATATA-TGTGGCGAAGCCACCAGA
1 CAGATATAGATATTGTGGCGAAGCCACCAGA
62473296 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCGAAGCCACCAGAA
Found at i:62475151 original size:20 final size:20
Alignment explanation
Indices: 62475122--62475175 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
62475112 CATGGCCTGC
62475122 CCACATGGGCGTGTCACAAG
1 CCACATGGGCGTGTCACAAG
*
62475142 CCACACGGGCGTGTCACAAG
1 CCACATGGGCGTGTCACAAG
*
62475162 TCACATGGGCGTGT
1 CCACATGGGCGTGT
62475176 GACCCCTGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.22, C:0.30, G:0.31, T:0.17
Consensus pattern (20 bp):
CCACATGGGCGTGTCACAAG
Found at i:62480753 original size:27 final size:26
Alignment explanation
Indices: 62480722--62480899 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
62480712 TAAATTGTAC
62480722 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * * *
62480749 TGCACTAAGTGTGCTAAATGAATATG-
1 AGCACTAAGTGTGC-GATTGACTATGT
* *
62480775 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
62480803 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
62480831 GGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
62480858 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
62480885 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
62480900 GACTCGATAT
Statistics
Matches: 128, Mismatches: 17, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
26 1 0.01
27 101 0.79
28 26 0.20
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:62480838 original size:82 final size:81
Alignment explanation
Indices: 62480723--62480878 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
62480713 AAATTGTACA
* *
62480723 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCTAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
62480787 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
62480804 GCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
62480869 TGCGAGTTGA
65 TGCGAATTGA
62480879 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:62480890 original size:82 final size:81
Alignment explanation
Indices: 62480719--62480899 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
62480709 GATTAAATTG
* *
62480719 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCTAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
62480784 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
62480800 TGCGGCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
62480864 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
62480882 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
62480900 GACTCGATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:62488579 original size:33 final size:33
Alignment explanation
Indices: 62488542--62488645 Score: 124
Period size: 33 Copynumber: 3.2 Consensus size: 33
62488532 TACCTAAAAG
62488542 GTACAACTAGAAAAGGAAATGTACA-TTGTGTGT
1 GTACAACTAGAAAAGGAAATGTACACTT-TGTGT
* *
62488575 GTACAGCTTA-AAAAGGAAACGTACACTTTGTGT
1 GTACAAC-TAGAAAAGGAAATGTACACTTTGTGT
* * *
62488608 GTAC-ACTTGAAAAGGAAATGTACGCCTTGTGT
1 GTACAACTAGAAAAGGAAATGTACACTTTGTGT
62488640 GTACAA
1 GTACAA
62488646 TGTAAAAAGT
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
31 1 0.02
32 25 0.42
33 30 0.50
34 4 0.07
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.27
Consensus pattern (33 bp):
GTACAACTAGAAAAGGAAATGTACACTTTGTGT
Found at i:62488638 original size:32 final size:31
Alignment explanation
Indices: 62488542--62488644 Score: 116
Period size: 32 Copynumber: 3.2 Consensus size: 31
62488532 TACCTAAAAG
* *
62488542 GTACAACTAGAAAAGGAAATGTACATTGTGTGT
1 GTAC-ACTTGAAAAGGAAATGTACCTT-TGTGT
* *
62488575 GTACAGCTTAAAAAGGAAACGTACACTTTGTGT
1 GTACA-CTTGAAAAGGAAATGTAC-CTTTGTGT
*
62488608 GTACACTTGAAAAGGAAATGTACGCCTTGTGT
1 GTACACTTGAAAAGGAAATGTAC-CTTTGTGT
62488640 GTACA
1 GTACA
62488645 ATGTAAAAAG
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
32 29 0.48
33 29 0.48
34 2 0.03
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (31 bp):
GTACACTTGAAAAGGAAATGTACCTTTGTGT
Found at i:62488685 original size:31 final size:31
Alignment explanation
Indices: 62488650--62488820 Score: 157
Period size: 31 Copynumber: 5.5 Consensus size: 31
62488640 GTACAATGTA
62488650 AAAAGTGGTAGCTTCGACTACCTGATCAGTG
1 AAAAGTGGTAGCTTCGACTACCTGATCAGTG
* * *
62488681 AAAAGTGGTAGTTTCGGCTACCTGATGAGTG
1 AAAAGTGGTAGCTTCGACTACCTGATCAGTG
* * * *
62488712 AAAAGTAGTAGCTTCGACTATCGGATTAGTG
1 AAAAGTGGTAGCTTCGACTACCTGATCAGTG
* * * *
62488743 AAAAGTGGCAGC-TCTAGCTACTTGATCTGTG
1 AAAAGTGGTAGCTTCGA-CTACCTGATCAGTG
* * *
62488774 AATAGTGGTAGCTTCGGCTACAAGTGA-CAAGTG
1 AAAAGTGGTAGCTTCGACTAC--CTGATC-AGTG
*
62488807 ATAAGTGGTAGCTT
1 AAAAGTGGTAGCTT
62488821 TAGCTACATT
Statistics
Matches: 110, Mismatches: 25, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
30 3 0.03
31 86 0.78
32 3 0.03
33 18 0.16
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (31 bp):
AAAAGTGGTAGCTTCGACTACCTGATCAGTG
Found at i:62488915 original size:27 final size:27
Alignment explanation
Indices: 62488884--62488948 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
62488874 TAGTTGAACT
*
62488884 ATGGCAAAGTGATAAAGTGTGCCAATC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
62488911 ATGGCAAAGTGATATAGTGTGCCAAAC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
62488938 ATAGCAAAGTG
1 ATGGCAAAGTG
62488949 TTTAGTGATC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.22
Consensus pattern (27 bp):
ATGGCAAAGTGATAAAGTGTGCCAAAC
Found at i:62491246 original size:33 final size:33
Alignment explanation
Indices: 62491209--62491312 Score: 124
Period size: 33 Copynumber: 3.2 Consensus size: 33
62491199 TACCTAAAAG
62491209 GTACAACTAGAAAAGGAAATGTACA-TTGTGTGT
1 GTACAACTAGAAAAGGAAATGTACACTT-TGTGT
* *
62491242 GTACAGCTTA-AAAAGGAAACGTACACTTTGTGT
1 GTACAAC-TAGAAAAGGAAATGTACACTTTGTGT
* * *
62491275 GTAC-ACTTGAAAAGGAAATGTACGCCTTGTGT
1 GTACAACTAGAAAAGGAAATGTACACTTTGTGT
62491307 GTACAA
1 GTACAA
62491313 TGTAAAAAGT
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
31 1 0.02
32 25 0.42
33 30 0.50
34 4 0.07
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.27
Consensus pattern (33 bp):
GTACAACTAGAAAAGGAAATGTACACTTTGTGT
Found at i:62491305 original size:32 final size:31
Alignment explanation
Indices: 62491209--62491311 Score: 116
Period size: 32 Copynumber: 3.2 Consensus size: 31
62491199 TACCTAAAAG
* *
62491209 GTACAACTAGAAAAGGAAATGTACATTGTGTGT
1 GTAC-ACTTGAAAAGGAAATGTACCTT-TGTGT
* *
62491242 GTACAGCTTAAAAAGGAAACGTACACTTTGTGT
1 GTACA-CTTGAAAAGGAAATGTAC-CTTTGTGT
*
62491275 GTACACTTGAAAAGGAAATGTACGCCTTGTGT
1 GTACACTTGAAAAGGAAATGTAC-CTTTGTGT
62491307 GTACA
1 GTACA
62491312 ATGTAAAAAG
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
32 29 0.48
33 29 0.48
34 2 0.03
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (31 bp):
GTACACTTGAAAAGGAAATGTACCTTTGTGT
Found at i:62491352 original size:31 final size:31
Alignment explanation
Indices: 62491317--62491487 Score: 157
Period size: 31 Copynumber: 5.5 Consensus size: 31
62491307 GTACAATGTA
62491317 AAAAGTGGTAGCTTCGACTACCTGATCAGTG
1 AAAAGTGGTAGCTTCGACTACCTGATCAGTG
* * *
62491348 AAAAGTGGTAGTTTCGGCTACCTGATGAGTG
1 AAAAGTGGTAGCTTCGACTACCTGATCAGTG
* * * *
62491379 AAAAGTAGTAGCTTCGACTATCGGATTAGTG
1 AAAAGTGGTAGCTTCGACTACCTGATCAGTG
* * * *
62491410 AAAAGTGGCAGC-TCTAGCTACTTGATCTGTG
1 AAAAGTGGTAGCTTCGA-CTACCTGATCAGTG
* * *
62491441 AATAGTGGTAGCTTCGGCTACAAGTGA-CAAGTG
1 AAAAGTGGTAGCTTCGACTAC--CTGATC-AGTG
*
62491474 ATAAGTGGTAGCTT
1 AAAAGTGGTAGCTT
62491488 TAGCTACATT
Statistics
Matches: 110, Mismatches: 25, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
30 3 0.03
31 86 0.78
32 3 0.03
33 18 0.16
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (31 bp):
AAAAGTGGTAGCTTCGACTACCTGATCAGTG
Found at i:62491582 original size:27 final size:27
Alignment explanation
Indices: 62491551--62491615 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
62491541 TAGTTGAACT
*
62491551 ATGGCAAAGTGATAAAGTGTGCCAATC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
62491578 ATGGCAAAGTGATATAGTGTGCCAAAC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
62491605 ATAGCAAAGTG
1 ATGGCAAAGTG
62491616 TTTAGTGATC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.22
Consensus pattern (27 bp):
ATGGCAAAGTGATAAAGTGTGCCAAAC
Found at i:62493919 original size:27 final size:26
Alignment explanation
Indices: 62493889--62494064 Score: 165
Period size: 27 Copynumber: 6.5 Consensus size: 26
62493879 AAATTGTACA
*
62493889 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTG
* *
62493916 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCG-ATTGACTATG-TG
* *
62493943 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTG
*
62493970 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTG
* *
62493998 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTG
* * *
62494025 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTG
*
62494052 GCACTGAGTGTGC
1 GCACTAAGTGTGC
62494065 AGGCTCAATA
Statistics
Matches: 126, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 99 0.79
28 26 0.21
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTG
Found at i:62494004 original size:82 final size:81
Alignment explanation
Indices: 62493889--62494044 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
62493879 AAATTGTACA
* * *
62493889 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
62493953 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
62493970 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
62494035 TGCGAGTTGA
65 TGCGAATTGA
62494045 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:62494056 original size:82 final size:81
Alignment explanation
Indices: 62493885--62494064 Score: 218
Period size: 82 Copynumber: 2.2 Consensus size: 81
62493875 GATTAAATTG
* * *
62493885 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
62493950 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
62493966 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
62494030 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
62494048 TATAGCACTGAGTGTGC
1 TACAGCACTAAGTGTGC
62494065 AGGCTCAATA
Statistics
Matches: 82, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 62 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:62502735 original size:43 final size:44
Alignment explanation
Indices: 62502668--62502750 Score: 159
Period size: 43 Copynumber: 1.9 Consensus size: 44
62502658 TAATCATATT
62502668 CTCATGTTTAAGTAAAATTAATTCTTAATCGAAAGTCATAGGAA
1 CTCATGTTTAAGTAAAATTAATTCTTAATCGAAAGTCATAGGAA
62502712 CTCATGTTTAAG-AAAATTAATTCTTAATCGAAAGTCATA
1 CTCATGTTTAAGTAAAATTAATTCTTAATCGAAAGTCATA
62502751 TTCCTAGAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
43 27 0.69
44 12 0.31
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (44 bp):
CTCATGTTTAAGTAAAATTAATTCTTAATCGAAAGTCATAGGAA
Found at i:62503971 original size:15 final size:15
Alignment explanation
Indices: 62503951--62503982 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
62503941 AAGACAGAGA
62503951 TAGCTACATATTGAG
1 TAGCTACATATTGAG
62503966 TAGCTACATATTGAG
1 TAGCTACATATTGAG
62503981 TA
1 TA
62503983 TGACAACTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.34
Consensus pattern (15 bp):
TAGCTACATATTGAG
Found at i:62508007 original size:29 final size:27
Alignment explanation
Indices: 62507941--62508007 Score: 71
Period size: 31 Copynumber: 2.3 Consensus size: 27
62507931 GAGTTTTATG
*
62507941 TGTATAATTGCACCAAATCAAAGTTTA
1 TGTATAATTGCACCAAATCAAAGTTCA
* *
62507968 TCTATGCAATTGCACATTAAATCAAAGTTCA
1 TGTAT--AATTGCAC--CAAATCAAAGTTCA
62507999 TGTATAATT
1 TGTATAATT
62508008 TTGAGATTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
27 4 0.12
29 12 0.38
31 16 0.50
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.36
Consensus pattern (27 bp):
TGTATAATTGCACCAAATCAAAGTTCA
Found at i:62509093 original size:25 final size:28
Alignment explanation
Indices: 62509047--62509101 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 28
62509037 TTGTATGTAT
*
62509047 TTAAATAAATACATCAATTTATTTTTATA
1 TTAAATAAATA-ATCAATTTATTTATATA
62509076 TTAAATAAAT-AT-AA-TTATTTATATA
1 TTAAATAAATAATCAATTTATTTATATA
62509101 T
1 T
62509102 GTAACTATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 11 0.44
26 2 0.08
27 2 0.08
29 10 0.40
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (28 bp):
TTAAATAAATAATCAATTTATTTATATA
Found at i:62509133 original size:23 final size:23
Alignment explanation
Indices: 62509070--62509134 Score: 62
Period size: 23 Copynumber: 2.8 Consensus size: 23
62509060 TCAATTTATT
*
62509070 TTTATATTAAATAA-ATATAATTA
1 TTTATA-TAAATAATATATAAATA
**
62509093 TTTATATATGTAACTATATAAATA
1 TTTATATAAATAA-TATATAAATA
62509117 -TTATATAAATAATTATAT
1 TTTATATAAATAA-TATAT
62509135 TATTAATTCA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
22 5 0.15
23 21 0.62
24 8 0.24
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (23 bp):
TTTATATAAATAATATATAAATA
Found at i:62509142 original size:12 final size:12
Alignment explanation
Indices: 62509071--62509134 Score: 53
Period size: 12 Copynumber: 5.5 Consensus size: 12
62509061 CAATTTATTT
62509071 TTATATTAAATAA
1 TTATA-TAAATAA
* *
62509084 --ATATAATTAT
1 TTATATAAATAA
**
62509094 TTATATATGTAA
1 TTATATAAATAA
*
62509106 CTATATAAAT-A
1 TTATATAAATAA
62509117 TTATATAAATAA
1 TTATATAAATAA
62509129 TTATAT
1 TTATAT
62509135 TATTAATTCA
Statistics
Matches: 39, Mismatches: 9, Indels: 7
0.71 0.16 0.13
Matches are distributed among these distances:
10 5 0.13
11 13 0.33
12 21 0.54
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (12 bp):
TTATATAAATAA
Found at i:62518420 original size:29 final size:30
Alignment explanation
Indices: 62518363--62518420 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
62518353 CCTTTGAAAA
* * *
62518363 TATTTACAAAAAGAGGCATCTAATTTTTAT
1 TATTTACAAAAAGAGGCAACCAAATTTTAT
*
62518393 TATTTACGAAAAG-GGCAACCAAATTTTA
1 TATTTACAAAAAGAGGCAACCAAATTTTA
62518421 AAATAATTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 12 0.50
30 12 0.50
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.34
Consensus pattern (30 bp):
TATTTACAAAAAGAGGCAACCAAATTTTAT
Found at i:62528280 original size:19 final size:18
Alignment explanation
Indices: 62528238--62528289 Score: 52
Period size: 19 Copynumber: 2.9 Consensus size: 18
62528228 TAATAAATTT
*
62528238 AAAATATAATATATAATA
1 AAAATATAATATATAAGA
*
62528256 AAAATATATATTTATAAGA
1 AAAATATA-ATATATAAGA
* *
62528275 ATAATA-ATTATATAA
1 AAAATATAATATATAA
62528290 AATATATTAG
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
17 6 0.21
18 9 0.32
19 13 0.46
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (18 bp):
AAAATATAATATATAAGA
Found at i:62528285 original size:15 final size:15
Alignment explanation
Indices: 62528226--62528293 Score: 57
Period size: 16 Copynumber: 4.3 Consensus size: 15
62528216 TGTTATATTT
62528226 AATAATAAATT-TAAA
1 AATAAT-AATTATAAA
*
62528241 ATATAATATATAATAAA
1 A-ATAATA-ATTATAAA
* *
62528258 AATATATATTTATAAG
1 AATA-ATAATTATAAA
62528274 AATAATAATTATATAA
1 AATAATAATTATA-AA
62528290 AATA
1 AATA
62528294 TATTAGTTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 9
0.74 0.11 0.16
Matches are distributed among these distances:
15 10 0.24
16 24 0.57
17 8 0.19
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (15 bp):
AATAATAATTATAAA
Found at i:62529093 original size:35 final size:35
Alignment explanation
Indices: 62529047--62529211 Score: 321
Period size: 35 Copynumber: 4.7 Consensus size: 35
62529037 ATTACATCAA
62529047 TATCATATCTAAGATTGCAATCATATCTAAGATTG
1 TATCATATCTAAGATTGCAATCATATCTAAGATTG
62529082 TATCATATCTAAGATTGCAATCATATCTAAGATTG
1 TATCATATCTAAGATTGCAATCATATCTAAGATTG
62529117 TATCATATCTAAGATTGCAATCATATCTAAGATTG
1 TATCATATCTAAGATTGCAATCATATCTAAGATTG
62529152 TATCATATCTAAGATTGCAATCATATCTAAGATTG
1 TATCATATCTAAGATTGCAATCATATCTAAGATTG
62529187 TATCATATCTAAGATTGCATATCAT
1 TATCATATCTAAGATTGCA-ATCAT
62529212 TGAAGATTAT
Statistics
Matches: 129, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
35 124 0.96
36 5 0.04
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.38
Consensus pattern (35 bp):
TATCATATCTAAGATTGCAATCATATCTAAGATTG
Found at i:62530093 original size:121 final size:121
Alignment explanation
Indices: 62529826--62530184 Score: 592
Period size: 121 Copynumber: 3.0 Consensus size: 121
62529816 AGAGTCTGTT
* * * * **
62529826 TGAGAACATCTGAGAGTCAAATCTACTATGTCTTCGAATTGTTTCTTGTAAACACAAGAATGTCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
* *
62529891 AATCATCTTGGATCTGGCTTCAGTATAAACATCTGAAGGTTAGATCTGCCATGTGTC
66 AATCATCTTGGATCT-GCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATGTC
*
62529948 TAAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
* * *
62530013 AATCATCTTGGATCTACTTCAGAATAAACATCTGAAGTTTAGATCTGCTATATGTC
66 AATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATGTC
62530069 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
*
62530134 AATCATCTTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGATCTGCTAT
66 AATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTAT
62530185 CTTCGATCTG
Statistics
Matches: 220, Mismatches: 17, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
121 147 0.67
122 73 0.33
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (121 bp):
TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
AATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATGTC
Found at i:62530224 original size:44 final size:44
Alignment explanation
Indices: 62530176--62530355 Score: 177
Period size: 44 Copynumber: 4.1 Consensus size: 44
62530166 TGAAGGTTAG
* *
62530176 ATCTGCTATCTTCGATCTGTTCCCTATAAACATAGGGATGCCAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAA
62530220 ATCTGCTATCTTCAA-CTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGCTATCTTCAATC-TGTTCCCTATAAACACAGGGATGCCAA
** * * * * * *
62530262 ATGCTGAAATCTTCAATCTGCTTCGCTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCAATCTG-TTCCCTATAAACACAGGGATGCCAA
* * * **
62530308 ATCTACTATCTTCAATATGTTCCCTATAAACATAAAGATGCCAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAA
62530352 ATCT
1 ATCT
62530356 TGTTTCTTTG
Statistics
Matches: 108, Mismatches: 22, Indels: 12
0.76 0.15 0.08
Matches are distributed among these distances:
42 2 0.02
43 14 0.13
44 77 0.71
45 13 0.12
46 2 0.02
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.31
Consensus pattern (44 bp):
ATCTGCTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAA
Found at i:62531255 original size:13 final size:14
Alignment explanation
Indices: 62531237--62531266 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
62531227 TCTCCATATT
62531237 TTTA-TTTTTTCTC
1 TTTATTTTTTTCTC
62531250 TTTATTTTTTTCTC
1 TTTATTTTTTTCTC
62531264 TTT
1 TTT
62531267 TTCTTTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.07, C:0.13, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTATTTTTTTCTC
Found at i:62531271 original size:20 final size:20
Alignment explanation
Indices: 62531235--62531288 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 20
62531225 CCTCTCCATA
*
62531235 TTTTTATTTTTTCTCTTTATT
1 TTTTTCTTTTTTCT-TTTATT
62531256 TTTTTCTCTTTTTCTTTTATT
1 TTTTTCT-TTTTTCTTTTATT
62531277 TTTTTCTTTTTT
1 TTTTTCTTTTTT
62531289 TTGAAATAGA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
20 5 0.16
21 19 0.61
22 7 0.23
ACGTcount: A:0.06, C:0.11, G:0.00, T:0.83
Consensus pattern (20 bp):
TTTTTCTTTTTTCTTTTATT
Found at i:62531273 original size:13 final size:13
Alignment explanation
Indices: 62531243--62531286 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
62531233 TATTTTTATT
*
62531243 TTTTCTCTTTATTT
1 TTTTCTCTTT-TTC
62531257 TTTTCTCTTTTTC
1 TTTTCTCTTTTTC
* *
62531270 TTTTATTTTTTTC
1 TTTTCTCTTTTTC
62531283 TTTT
1 TTTT
62531287 TTTTGAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
13 17 0.63
14 10 0.37
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTCTCTTTTTC
Found at i:62531273 original size:14 final size:14
Alignment explanation
Indices: 62531242--62531287 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
62531232 ATATTTTTAT
62531242 TTTTTCTCTTTATT-
1 TTTTTCTCTTT-TTC
62531256 TTTTTCTCTTTTTC
1 TTTTTCTCTTTTTC
62531270 TTTTAT-T-TTTTTC
1 TTTT-TCTCTTTTTC
62531283 TTTTT
1 TTTTT
62531288 TTTGAAATAG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
12 1 0.03
13 12 0.40
14 16 0.53
15 1 0.03
ACGTcount: A:0.04, C:0.13, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTTCTCTTTTTC
Found at i:62531289 original size:21 final size:22
Alignment explanation
Indices: 62531241--62531289 Score: 82
Period size: 21 Copynumber: 2.3 Consensus size: 22
62531231 CATATTTTTA
62531241 TTTTTTCTCTTTATTTTTTTCT
1 TTTTTTCTCTTTATTTTTTTCT
*
62531263 CTTTTTCT-TTTATTTTTTTCT
1 TTTTTTCTCTTTATTTTTTTCT
62531284 TTTTTT
1 TTTTTT
62531290 TGAAATAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 18 0.72
22 7 0.28
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.84
Consensus pattern (22 bp):
TTTTTTCTCTTTATTTTTTTCT
Found at i:62531576 original size:109 final size:109
Alignment explanation
Indices: 62531385--62531599 Score: 403
Period size: 109 Copynumber: 2.0 Consensus size: 109
62531375 GAATTCATTG
62531385 GATCAGATAAATTCTTCCTATCCATTTCTTGTCAAAATCAATGCACCTCTAGAGAAAGCCCTCTT
1 GATCAGATAAATTCTTCCTATCCATTTCTTGTCAAAATCAATGCACCTCTAGAGAAAGCCCTCTT
*
62531450 CGTAACATATGGTCCTTCCCAATTCGACATCCTTTTGCAAGTTT
66 CGTAACATATGGCCCTTCCCAATTCGACATCCTTTTGCAAGTTT
*
62531494 GATCAGATAAATTCTTCCTATCCATTTCTTGTCAAAATCAATGCACCTCTAGAGAAAGCCCTTTT
1 GATCAGATAAATTCTTCCTATCCATTTCTTGTCAAAATCAATGCACCTCTAGAGAAAGCCCTCTT
*
62531559 CGTAACATATGGCCCTTCCCAATTCGGCATCCTTTTGCAAG
66 CGTAACATATGGCCCTTCCCAATTCGACATCCTTTTGCAAG
62531600 GTTTCCTTTA
Statistics
Matches: 103, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
109 103 1.00
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33
Consensus pattern (109 bp):
GATCAGATAAATTCTTCCTATCCATTTCTTGTCAAAATCAATGCACCTCTAGAGAAAGCCCTCTT
CGTAACATATGGCCCTTCCCAATTCGACATCCTTTTGCAAGTTT
Found at i:62535792 original size:25 final size:25
Alignment explanation
Indices: 62535758--62535809 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
62535748 ATAAAAGAAT
*
62535758 GGGTTCGGGAGTCGGTTACGTACGA
1 GGGTTCGGGAGTCGATTACGTACGA
62535783 GGGTTCGGGAGTCGATTACGTACGA
1 GGGTTCGGGAGTCGATTACGTACGA
62535808 GG
1 GG
62535810 AAGGATTAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.17, C:0.15, G:0.44, T:0.23
Consensus pattern (25 bp):
GGGTTCGGGAGTCGATTACGTACGA
Found at i:62537017 original size:18 final size:18
Alignment explanation
Indices: 62536961--62537070 Score: 143
Period size: 18 Copynumber: 6.1 Consensus size: 18
62536951 TGAAATGATT
*
62536961 ATATCTAAGATTGTATATC
1 ATATCTAAGATTGCA-ATC
*
62536980 ATATCTAAGATTG-TATC
1 ATATCTAAGATTGCAATC
62536997 ATATCTAAGATTGCAATC
1 ATATCTAAGATTGCAATC
*
62537015 ATATCTAAGATTGCAATG
1 ATATCTAAGATTGCAATC
*
62537033 ATATCTAAGATTG-TATC
1 ATATCTAAGATTGCAATC
*
62537050 ATATTTAAGATTGCATATC
1 ATATCTAAGATTGCA-ATC
62537069 AT
1 AT
62537071 TGAAGATTAT
Statistics
Matches: 81, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
17 30 0.37
18 33 0.41
19 18 0.22
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (18 bp):
ATATCTAAGATTGCAATC
Found at i:62537023 original size:35 final size:35
Alignment explanation
Indices: 62536961--62537070 Score: 141
Period size: 35 Copynumber: 3.1 Consensus size: 35
62536951 TGAAATGATT
*
62536961 ATATCTAAGATTGTATATCATATCTAAGATTG-TATC
1 ATATCTAAGATTG-A-ATCATATCTAAGATTGCAATC
*
62536997 ATATCTAAGATTGCAATCATATCTAAGATTGCAATG
1 ATATCTAAGATTG-AATCATATCTAAGATTGCAATC
* *
62537033 ATATCTAAGATTGTATCATATTTAAGATTGCATATC
1 ATATCTAAGATTGAATCATATCTAAGATTGCA-ATC
62537069 AT
1 AT
62537071 TGAAGATTAT
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
35 33 0.50
36 33 0.50
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (35 bp):
ATATCTAAGATTGAATCATATCTAAGATTGCAATC
Found at i:62537045 original size:53 final size:55
Alignment explanation
Indices: 62536961--62537070 Score: 179
Period size: 53 Copynumber: 2.0 Consensus size: 55
62536951 TGAAATGATT
*
62536961 ATATCTAAGATTGTATATCATATCTAAGATTGTATCATATCTAAGATTGCA-ATC
1 ATATCTAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTGCATATC
* *
62537015 ATATCTAAGATTGCA-ATGATATCTAAGATTGTATCATATTTAAGATTGCATATC
1 ATATCTAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTGCATATC
62537069 AT
1 AT
62537071 TGAAGATTAT
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
53 33 0.63
54 19 0.37
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (55 bp):
ATATCTAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTGCATATC
Found at i:62545847 original size:13 final size:13
Alignment explanation
Indices: 62545829--62545855 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
62545819 TAGAGTTGGT
62545829 ATGATCTAACCTA
1 ATGATCTAACCTA
62545842 ATGATCTAACCTA
1 ATGATCTAACCTA
62545855 A
1 A
62545856 ATCAACCCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (13 bp):
ATGATCTAACCTA
Found at i:62546389 original size:22 final size:22
Alignment explanation
Indices: 62546356--62546402 Score: 53
Period size: 22 Copynumber: 2.1 Consensus size: 22
62546346 ATAACATGTG
62546356 AAAATAATAATT-TAATATAATT
1 AAAATAATAATTAT-ATATAATT
*
62546378 AAAATTAA-AATTATTTATAATT
1 AAAA-TAATAATTATATATAATT
62546400 AAA
1 AAA
62546403 TTAGTAAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
AAAATAATAATTATATATAATT
Found at i:62546956 original size:29 final size:31
Alignment explanation
Indices: 62546896--62546958 Score: 78
Period size: 29 Copynumber: 2.1 Consensus size: 31
62546886 GAAATTGAAA
* *
62546896 TTTAATTTATTGTGTAATTTGATATATGAAT
1 TTTAATTTATTGTGTAATTTGACATATAAAT
62546927 TTTAATTTA-T-TGTAATTAT-ACATATAAAT
1 TTTAATTTATTGTGTAATT-TGACATATAAAT
62546956 TTT
1 TTT
62546959 GACTATGGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 18 0.62
30 2 0.07
31 9 0.31
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.56
Consensus pattern (31 bp):
TTTAATTTATTGTGTAATTTGACATATAAAT
Found at i:62548108 original size:14 final size:14
Alignment explanation
Indices: 62548086--62548117 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
62548076 TTGTATTAAG
*
62548086 TATTGTTATAGATT
1 TATTATTATAGATT
62548100 TATTATTATAGATT
1 TATTATTATAGATT
62548114 TATT
1 TATT
62548118 TATTTTTCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.09, T:0.59
Consensus pattern (14 bp):
TATTATTATAGATT
Found at i:62551362 original size:42 final size:42
Alignment explanation
Indices: 62551313--62551403 Score: 155
Period size: 42 Copynumber: 2.2 Consensus size: 42
62551303 ACGCCCAGGG
*
62551313 CACACGCTTGTGCCTGAGGTCTTGTCATCCACACGGCTGAGA
1 CACACGCTTGTGCCTGAGGTCATGTCATCCACACGGCTGAGA
* *
62551355 CATACGCTTGTGCCTGAGGTCATGTCATCCACACTGCTGAGA
1 CACACGCTTGTGCCTGAGGTCATGTCATCCACACGGCTGAGA
62551397 CACACGC
1 CACACGC
62551404 CCGTGTCTCT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.21, C:0.32, G:0.24, T:0.23
Consensus pattern (42 bp):
CACACGCTTGTGCCTGAGGTCATGTCATCCACACGGCTGAGA
Found at i:62551924 original size:17 final size:17
Alignment explanation
Indices: 62551902--62551937 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
62551892 TATACATGCC
62551902 ATAACTCAAAATGTCGA
1 ATAACTCAAAATGTCGA
62551919 ATAACTCAAAATGTCGA
1 ATAACTCAAAATGTCGA
62551936 AT
1 AT
62551938 TTATTGGTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.47, C:0.17, G:0.11, T:0.25
Consensus pattern (17 bp):
ATAACTCAAAATGTCGA
Found at i:62552466 original size:42 final size:42
Alignment explanation
Indices: 62552359--62552509 Score: 160
Period size: 42 Copynumber: 3.6 Consensus size: 42
62552349 ATACCAATGC
* * * * *
62552359 CATATCCCAGATATGGTCTTACATG-GGATCTCGTCTCGATGT
1 CATATCCCAGATATGGTCTTACACGAAG-TCTCATATAGATGT
* * *
62552401 CAATAGCCCAGCTATGGTCTTACACGAAGTCTCATATTGATGT
1 C-ATATCCCAGATATGGTCTTACACGAAGTCTCATATAGATGT
* * *
62552444 CATATCCCAGATATGGTCTTACATGACGTCTCATATAGATGC
1 CATATCCCAGATATGGTCTTACACGAAGTCTCATATAGATGT
* *
62552486 CATATCCCATATATGGCCTTACAC
1 CATATCCCAGATATGGTCTTACAC
62552510 ATAGTCTTAG
Statistics
Matches: 91, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
42 57 0.63
43 33 0.36
44 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.31
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACGAAGTCTCATATAGATGT
Found at i:62554453 original size:42 final size:42
Alignment explanation
Indices: 62554346--62554496 Score: 169
Period size: 42 Copynumber: 3.6 Consensus size: 42
62554336 ATACCAATGC
* * * * *
62554346 CATATCCCAGATATGGTCTTACATG-GGATCTCGTCTCGATGT
1 CATATCCCAGATATGGTCTTACACGAAG-TCTCATATAGATGT
* * *
62554388 CAATAGCCCAGCTATGGTCTTACACGAAGTCTCATATTGATGT
1 C-ATATCCCAGATATGGTCTTACACGAAGTCTCATATAGATGT
* *
62554431 CATATCCCAGATATGGTCTTACATGAAGTCTCATATAGATGC
1 CATATCCCAGATATGGTCTTACACGAAGTCTCATATAGATGT
* *
62554473 CATATCCCATATATGGCCTTACAC
1 CATATCCCAGATATGGTCTTACAC
62554497 ATAGTCTTAG
Statistics
Matches: 92, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
42 58 0.63
43 33 0.36
44 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACGAAGTCTCATATAGATGT
Found at i:62562012 original size:42 final size:41
Alignment explanation
Indices: 62561947--62562060 Score: 156
Period size: 42 Copynumber: 2.7 Consensus size: 41
62561937 GGATCTCGTG
* *
62561947 TCGATGTCAATATCCCAGTTATGGTCCTACACGAAGTCTCATA
1 TCGATG-CCATAT-CCAGATATGGTCCTACACGAAGTCTCATA
*
62561990 TCGATGCCATATCCTAGATATGGTCTTACACGAAGTCTCATA
1 TCGATGCCATATCC-AGATATGGTCCTACACGAAGTCTCATA
* *
62562032 TAGATGCCATATCCAGATATGGCCCTACA
1 TCGATGCCATATCCAGATATGGTCCTACA
62562061 TATAGTCTTA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
41 15 0.23
42 43 0.67
43 6 0.09
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (41 bp):
TCGATGCCATATCCAGATATGGTCCTACACGAAGTCTCATA
Found at i:62568646 original size:23 final size:23
Alignment explanation
Indices: 62568620--62568692 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
62568610 TGATTTTTAA
*
62568620 ATTTTGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
*
62568643 ATTTAGAATTATTTAGTGATTAT
1 ATTTAGAATTATTTAGTGATAAT
*
62568666 ATTTAGGATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
62568689 ATTT
1 ATTT
62568693 TGGAAAAATC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (23 bp):
ATTTAGAATTATTTAGTGATAAT
Found at i:62568647 original size:13 final size:13
Alignment explanation
Indices: 62568629--62568692 Score: 68
Period size: 13 Copynumber: 5.4 Consensus size: 13
62568619 AATTTTGAAT
62568629 TATTTAGTGATAA
1 TATTTAGTGATAA
*
62568642 TATTTA--GA-AT
1 TATTTAGTGATAA
*
62568652 TATTTAGTGATTA
1 TATTTAGTGATAA
62568665 TATTTAG-GAT--
1 TATTTAGTGATAA
62568675 TATTTAGTGATAA
1 TATTTAGTGATAA
62568688 TATTT
1 TATTT
62568693 TGGAAAAATC
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
10 14 0.33
11 5 0.12
12 5 0.12
13 18 0.43
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:62574813 original size:46 final size:45
Alignment explanation
Indices: 62574763--62574938 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
62574753 TGGTTGAGCA
62574763 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
62574809 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
62574856 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
62574902 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62574939 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:62574919 original size:93 final size:93
Alignment explanation
Indices: 62574760--62574930 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
62574750 GGATGGTTGA
* *
62574760 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
62574825 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
62574853 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
62574918 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
62574931 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:62577861 original size:15 final size:15
Alignment explanation
Indices: 62577841--62577909 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
62577831 GTATCTTGGG
62577841 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
62577856 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
62577871 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
62577886 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
62577901 TTTCTTTAT
1 TTTCTTTAT
62577910 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Done.