Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 184 of 235
Found at i:62577910 original size:30 final size:30
Alignment explanation
Indices: 62577832--62577919 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
62577822 CATAGTATCG
* * * *
62577832 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
62577862 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
62577892 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
62577920 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:62580336 original size:46 final size:45
Alignment explanation
Indices: 62580286--62580461 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
62580276 TGGTTGAGCA
62580286 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
62580332 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
62580379 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
62580425 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62580462 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:62580442 original size:93 final size:93
Alignment explanation
Indices: 62580283--62580453 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
62580273 GGATGGTTGA
* *
62580283 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
62580348 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
62580376 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
62580441 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
62580454 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:62582827 original size:21 final size:22
Alignment explanation
Indices: 62582801--62582854 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
62582791 CGGCCTCTAG
**
62582801 CACGGGCGTGTCCC-AGGGTCA
1 CACGGGCGTGTCCCTAGGACCA
** *
62582822 CACGGGTTTGTCCCTTGGACCA
1 CACGGGCGTGTCCCTAGGACCA
62582844 CACGGGCGTGT
1 CACGGGCGTGT
62582855 GAGCTCTGCA
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 12 0.48
22 13 0.52
ACGTcount: A:0.13, C:0.31, G:0.35, T:0.20
Consensus pattern (22 bp):
CACGGGCGTGTCCCTAGGACCA
Found at i:62583552 original size:45 final size:45
Alignment explanation
Indices: 62583497--62583585 Score: 169
Period size: 45 Copynumber: 2.0 Consensus size: 45
62583487 CTTTAATATC
62583497 ACGATCCAAAACCTGAACCGGCACCTCCTCAAAAGTCAAGTCTGT
1 ACGATCCAAAACCTGAACCGGCACCTCCTCAAAAGTCAAGTCTGT
*
62583542 ACGATCCAAAATCTGAACCGGCACCTCCTCAAAAGTCAAGTCTG
1 ACGATCCAAAACCTGAACCGGCACCTCCTCAAAAGTCAAGTCTG
62583586 GTCTAACCTC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.34, C:0.33, G:0.16, T:0.18
Consensus pattern (45 bp):
ACGATCCAAAACCTGAACCGGCACCTCCTCAAAAGTCAAGTCTGT
Found at i:62589886 original size:47 final size:47
Alignment explanation
Indices: 62589771--62589898 Score: 165
Period size: 46 Copynumber: 2.7 Consensus size: 47
62589761 ACATCTCGTA
* * *
62589771 GCCGATGGATGTCCCAGACATGTCTTACACTGGC-TCTTGCCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCATCTTGCATCAAT
62589817 GCCGATGCATGTCCCAGACATGTCTTACACTAGCAT-TT-CAT-AATGT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCATCTTGCATCAA--T
*
62589863 GGCCGATGCATGTCCTAGACATGTCTTACACTAGCA
1 -GCCGATGCATGTCCCAGACATGTCTTACACTAGCA
62589899 CACACATATC
Statistics
Matches: 74, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
44 2 0.03
45 2 0.03
46 35 0.47
47 35 0.47
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCATCTTGCATCAAT
Found at i:62595788 original size:12 final size:12
Alignment explanation
Indices: 62595773--62595806 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
62595763 TAAAATAATT
62595773 TTTAAAAAGTAA
1 TTTAAAAAGTAA
62595785 TTTAAAAAGAGTAA
1 TTT-AAAA-AGTAA
62595799 TTTAAAAA
1 TTTAAAAA
62595807 TAAATTACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 4 0.20
13 8 0.40
14 8 0.40
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.32
Consensus pattern (12 bp):
TTTAAAAAGTAA
Found at i:62595792 original size:13 final size:14
Alignment explanation
Indices: 62595776--62595806 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
62595766 AATAATTTTT
62595776 AAAA-AGTAATTTA
1 AAAAGAGTAATTTA
62595789 AAAAGAGTAATTTA
1 AAAAGAGTAATTTA
62595803 AAAA
1 AAAA
62595807 TAAATTACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.65, C:0.00, G:0.10, T:0.26
Consensus pattern (14 bp):
AAAAGAGTAATTTA
Found at i:62596123 original size:20 final size:20
Alignment explanation
Indices: 62596098--62596137 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
62596088 CAACATCTAG
*
62596098 GATTAAATTTTGAATTTCAA
1 GATTAAATATTGAATTTCAA
62596118 GATTAAATATTGAATTTCAA
1 GATTAAATATTGAATTTCAA
62596138 AAGAGTACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.10, T:0.42
Consensus pattern (20 bp):
GATTAAATATTGAATTTCAA
Found at i:62599370 original size:23 final size:22
Alignment explanation
Indices: 62599328--62599370 Score: 52
Period size: 23 Copynumber: 1.9 Consensus size: 22
62599318 TCAGGTTGAG
*
62599328 TAAAATGATATGTTTGAAATAT
1 TAAAATGATATGTTTAAAATAT
62599350 TAAAATTGATAT-TATTAAAAT
1 TAAAA-TGATATGT-TTAAAAT
62599371 GGATAATTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (22 bp):
TAAAATGATATGTTTAAAATAT
Found at i:62601675 original size:14 final size:15
Alignment explanation
Indices: 62601648--62601679 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
62601638 TAAAAATCAT
62601648 TAATAATTTAAAAAA
1 TAATAATTTAAAAAA
*
62601663 TAATATTTTAAAAAA
1 TAATAATTTAAAAAA
62601678 TA
1 TA
62601680 TTTAACTACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
TAATAATTTAAAAAA
Found at i:62602114 original size:21 final size:22
Alignment explanation
Indices: 62602088--62602129 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
62602078 AAGTAAAGCC
62602088 TTAAAATAAAAAATA-ATTTAT
1 TTAAAATAAAAAATATATTTAT
* *
62602109 TTAAAATTAAAATTATATTTA
1 TTAAAATAAAAAATATATTTA
62602130 ACATATAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
TTAAAATAAAAAATATATTTAT
Found at i:62607794 original size:55 final size:55
Alignment explanation
Indices: 62607733--62607846 Score: 194
Period size: 55 Copynumber: 2.1 Consensus size: 55
62607723 TTGTAGTGGT
* *
62607733 TTTCATTGATGA-ACTCCTAATTTACTCCAAAACTGAAATTGAACATGATAATCAC
1 TTTCATTGATGACA-TCCTAATTTACTCCAAAACTAAAAATGAACATGATAATCAC
62607788 TTTCATTGATGACATCCTAATTTACTCCAAAACTAAAAATGAACATGATAATCAC
1 TTTCATTGATGACATCCTAATTTACTCCAAAACTAAAAATGAACATGATAATCAC
62607843 TTTC
1 TTTC
62607847 GTACTGTACT
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
55 55 0.98
56 1 0.02
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (55 bp):
TTTCATTGATGACATCCTAATTTACTCCAAAACTAAAAATGAACATGATAATCAC
Found at i:62609435 original size:95 final size:95
Alignment explanation
Indices: 62609272--62609461 Score: 353
Period size: 95 Copynumber: 2.0 Consensus size: 95
62609262 GGCCTTAGAC
*
62609272 ACCTGACTTAATTTTAGTACTACGTATAACCCTCAGATCGACGGACAATCTGAGTGAGTCATTCA
1 ACCTGACTTAATTTTAGTACTACGTATAACCCTCAGACCGACGGACAATCTGAGTGAGTCATTCA
62609337 GATTCGGGAAGATATGCTTTAGAGTTTTGT
66 GATTCGGGAAGATATGCTTTAGAGTTTTGT
* *
62609367 ACCTGACTTAATTTTAGTACTGCGTATCACCCTCAGACCGACGGACAATCTGAGTGAGTCATTCA
1 ACCTGACTTAATTTTAGTACTACGTATAACCCTCAGACCGACGGACAATCTGAGTGAGTCATTCA
62609432 GATTCGGGAAGATATGCTTTAGAGTTTTGT
66 GATTCGGGAAGATATGCTTTAGAGTTTTGT
62609462 GATAGACTTC
Statistics
Matches: 92, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
95 92 1.00
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (95 bp):
ACCTGACTTAATTTTAGTACTACGTATAACCCTCAGACCGACGGACAATCTGAGTGAGTCATTCA
GATTCGGGAAGATATGCTTTAGAGTTTTGT
Found at i:62622236 original size:14 final size:14
Alignment explanation
Indices: 62622217--62622245 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
62622207 CACGTTTAAG
62622217 GCTTGGAAAACTAT
1 GCTTGGAAAACTAT
62622231 GCTTGGAAAACTAT
1 GCTTGGAAAACTAT
62622245 G
1 G
62622246 ATCGAGAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (14 bp):
GCTTGGAAAACTAT
Found at i:62633926 original size:13 final size:13
Alignment explanation
Indices: 62633908--62633939 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
62633898 TGCAAATTAT
62633908 AAAGAAAGAAAGA
1 AAAGAAAGAAAGA
62633921 AAAGAAAGAAAGA
1 AAAGAAAGAAAGA
62633934 AAAGAA
1 AAAGAA
62633940 GAAGAGTCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (13 bp):
AAAGAAAGAAAGA
Found at i:62634378 original size:18 final size:19
Alignment explanation
Indices: 62634347--62634382 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
62634337 AAGCAAAATA
62634347 TAATGTGAAAATTGAATTT
1 TAATGTGAAAATTGAATTT
62634366 TAATGTG-AAATTGAATT
1 TAATGTGAAAATTGAATT
62634383 GTGTAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.42, C:0.00, G:0.17, T:0.42
Consensus pattern (19 bp):
TAATGTGAAAATTGAATTT
Found at i:62640378 original size:68 final size:68
Alignment explanation
Indices: 62640290--62640448 Score: 171
Period size: 68 Copynumber: 2.3 Consensus size: 68
62640280 AACCTCATCC
* * * * *
62640290 TAAGCTGATGAACAGTAAGCTCTATTAAGCTGAAACGGTAAGCTCTATCGAGTTGAA-CAGTAAG
1 TAAGCTGA--AACAGTAAGCTCTATTAAGCT-AAACAGTAAGATCTATCGAGCTAAATCAATAAG
62640354 CT-C-A
63 CTCCAA
* * *
62640358 TACGAGCTGAAACAGTAAGCTCTATTGATCTAAACAGTAAGATCTTTCGAGCTAAATCAATAAGC
1 TA--AGCTGAAACAGTAAGCTCTATTAAGCTAAACAGTAAGATCTATCGAGCTAAATCAATAAGC
62640423 TCCAA
64 TCCAA
*
62640428 TAAGCTGAAATAGTAAGCTCT
1 TAAGCTGAAACAGTAAGCTCT
62640449 TTCGAGCTGT
Statistics
Matches: 77, Mismatches: 9, Indels: 10
0.80 0.09 0.10
Matches are distributed among these distances:
67 20 0.26
68 47 0.61
69 1 0.01
70 9 0.12
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (68 bp):
TAAGCTGAAACAGTAAGCTCTATTAAGCTAAACAGTAAGATCTATCGAGCTAAATCAATAAGCTC
CAA
Found at i:62640394 original size:45 final size:45
Alignment explanation
Indices: 62640300--62640424 Score: 123
Period size: 45 Copynumber: 2.8 Consensus size: 45
62640290 TAAGCTGATG
* *
62640300 AACAGTAAGCTCTATTA--AGCTGAAACGGTAAGCTCTATCGAGTTG
1 AACAGTAAGCTC-A-TACGAGCTGAAACAGTAAGCTCTATCGAGTTA
*
62640345 AACAGTAAGCTCATACGAGCTGAAACAGTAAGCTCTATTGA-TCTA
1 AACAGTAAGCTCATACGAGCTGAAACAGTAAGCTCTATCGAGT-TA
* * * *
62640390 AACAGTAAGATCTTTCGAGCT-AAATCAATAAGCTC
1 AACAGTAAGCTCATACGAGCTGAAA-CAGTAAGCTC
62640425 CAATAAGCTG
Statistics
Matches: 69, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
43 2 0.03
44 5 0.07
45 62 0.90
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (45 bp):
AACAGTAAGCTCATACGAGCTGAAACAGTAAGCTCTATCGAGTTA
Found at i:62640456 original size:23 final size:23
Alignment explanation
Indices: 62640300--62640457 Score: 121
Period size: 23 Copynumber: 7.0 Consensus size: 23
62640290 TAAGCTGATG
*
62640300 AACAGTAAGCTCTATT-AAGCTGA
1 AACAGTAAGCTCT-TTCGAGCTGA
* * *
62640323 AACGGTAAGCTCTATCGAGTTG-
1 AACAGTAAGCTCTTTCGAGCTGA
* *
62640345 AACAGTAAGCTCATACGAGCTGA
1 AACAGTAAGCTCTTTCGAGCTGA
*
62640368 AACAGTAAGCTCTATT-GATCT-A
1 AACAGTAAGCTCT-TTCGAGCTGA
*
62640390 AACAGTAAGATCTTTCGAGCT-A
1 AACAGTAAGCTCTTTCGAGCTGA
* ** *
62640412 AATCAATAAGCTCCAAT-AAGCTGA
1 AA-CAGTAAGCT-CTTTCGAGCTGA
*
62640436 AATAGTAAGCTCTTTCGAGCTG
1 AACAGTAAGCTCTTTCGAGCTG
62640458 TAGTGAGTCC
Statistics
Matches: 103, Mismatches: 24, Indels: 16
0.72 0.17 0.11
Matches are distributed among these distances:
21 2 0.02
22 40 0.39
23 55 0.53
24 6 0.06
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (23 bp):
AACAGTAAGCTCTTTCGAGCTGA
Found at i:62648303 original size:67 final size:67
Alignment explanation
Indices: 62648195--62648340 Score: 229
Period size: 67 Copynumber: 2.2 Consensus size: 67
62648185 TTTATGTGTC
* * ** *
62648195 ACACGCCCATGTATCTAGGCCGTGGCAAAATAGGACATACATACTGACTTATTTACATGGTCTCA
1 ACACGCCCGTGTATCTAGGCCATGGCAAAATAGGACATACATACTGACTTATCGACATAGTCTCA
62648260 AG
66 AG
* *
62648262 ACACGGCCGTGTATCTAGGCCATGGCAAAATAGGGCATACATACTGACTTATCGACATAGTCTCA
1 ACACGCCCGTGTATCTAGGCCATGGCAAAATAGGACATACATACTGACTTATCGACATAGTCTCA
62648327 AG
66 AG
62648329 ACACGCCCGTGT
1 ACACGCCCGTGT
62648341 GGCGGCCCGT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
67 71 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.23
Consensus pattern (67 bp):
ACACGCCCGTGTATCTAGGCCATGGCAAAATAGGACATACATACTGACTTATCGACATAGTCTCA
AG
Found at i:62649484 original size:23 final size:22
Alignment explanation
Indices: 62649450--62649607 Score: 108
Period size: 23 Copynumber: 7.0 Consensus size: 22
62649440 TGAGCTGATG
*
62649450 AACAGTAAGCTCTAGTGAGCTGA
1 AACAGTAAGCTCTA-TAAGCTGA
*
62649473 AACGGTAAGCTCTATCAAGCTG-
1 AACAGTAAGCTCTAT-AAGCTGA
*
62649495 AACAGTAAGCTCATACAAGCTGA
1 AACAGTAAGCTC-TATAAGCTGA
* * *
62649518 AAC-GATAAGCTCTGTTGAGCT-C
1 AACAG-TAAGCTCT-ATAAGCTGA
* *
62649540 AACAATAAGCTCTTTCAAGCT-A
1 AACAGTAAGCTCTAT-AAGCTGA
* *
62649562 AATCGGTAAGCTCCAATAAGCTGA
1 AA-CAGTAAGCT-CTATAAGCTGA
*
62649586 AACAGTAAGCTCTTTCAAGCTG
1 AACAGTAAGCTCTAT-AAGCTG
62649608 TAGTGAGTCT
Statistics
Matches: 106, Mismatches: 18, Indels: 22
0.73 0.12 0.15
Matches are distributed among these distances:
21 2 0.02
22 39 0.37
23 60 0.57
24 5 0.05
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (22 bp):
AACAGTAAGCTCTATAAGCTGA
Found at i:62649502 original size:45 final size:43
Alignment explanation
Indices: 62649448--62649607 Score: 142
Period size: 45 Copynumber: 3.5 Consensus size: 43
62649438 CCTGAGCTGA
*
62649448 TGAACAGTAAGCTCTAGTGAGCTGAAACGGTAAGCTCTATCAAGC
1 TGAACAGTAAGCTCTA-TAAGCTGAAACGGTAAGCTCTAT-AAGC
* * * *
62649493 TGAACAGTAAGCTCATACAAGCTGAAACGATAAGCTCTGTTGAGC
1 TGAACAGTAAGCTC-TATAAGCTGAAACGGTAAGCTCT-ATAAGC
* * * *
62649538 TCAACAATAAGCTCTTTCAAGCT-AAATCGGTAAGCTCCAATAAGC
1 TGAACAGTAAGCTCTAT-AAGCTGAAA-CGGTAAGCT-CTATAAGC
*
62649583 TGAAACAGTAAGCTCTTTCAAGCTG
1 TG-AACAGTAAGCTCTAT-AAGCTG
62649608 TAGTGAGTCT
Statistics
Matches: 93, Mismatches: 15, Indels: 12
0.77 0.12 0.10
Matches are distributed among these distances:
44 4 0.04
45 65 0.70
46 24 0.26
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (43 bp):
TGAACAGTAAGCTCTATAAGCTGAAACGGTAAGCTCTATAAGC
Found at i:62652095 original size:18 final size:18
Alignment explanation
Indices: 62652072--62652107 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
62652062 TCTTCCGATT
62652072 CCCAGGTAGCTTACTTAA
1 CCCAGGTAGCTTACTTAA
*
62652090 CCCAGGTAGCTTCCTTAA
1 CCCAGGTAGCTTACTTAA
62652108 TTCTTTAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.28
Consensus pattern (18 bp):
CCCAGGTAGCTTACTTAA
Found at i:62654556 original size:27 final size:27
Alignment explanation
Indices: 62654526--62654587 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
62654516 GACACAAGTA
*
62654526 TCTGCTTTTCTTTTTTCTTTGTTGAGT
1 TCTGCTTTTCTTTTTTCTTTGCTGAGT
62654553 TCTGCTTTTCTTTTTTCTTTGCTGAGT
1 TCTGCTTTTCTTTTTTCTTTGCTGAGT
*
62654580 TCTACTTT
1 TCTGCTTT
62654588 ATGTGCTCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.05, C:0.18, G:0.13, T:0.65
Consensus pattern (27 bp):
TCTGCTTTTCTTTTTTCTTTGCTGAGT
Found at i:62656685 original size:39 final size:39
Alignment explanation
Indices: 62656642--62656755 Score: 174
Period size: 39 Copynumber: 2.9 Consensus size: 39
62656632 CAGTGATGTT
* *
62656642 TATCCGGACTTAGGGTCCGCATGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
*
62656681 TATCCGGACTTAAGGTCCACAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
62656720 TAACCGGACTTAAGGTCTGCAGGCTACGTGCTGGAA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAA
62656756 ATATGTCCAG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 68 1.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:62658340 original size:219 final size:219
Alignment explanation
Indices: 62657961--62658398 Score: 806
Period size: 219 Copynumber: 2.0 Consensus size: 219
62657951 TCCCGCACAC
* *
62657961 GGGACAGTACCGATGGACTCTCAACCTATTACGTGCAAACAAAATGACGAGTCTAGAAAAGCCTT
1 GGGACAGCACCGATGGACTCTCAACCTATTACGTGCAAACAAAATGACGAGGCTAGAAAAGCCTT
62658026 TTATAATGTGATGAATGATTGGTTTAACCAATACATTCGAACTAATGCGGCTACTCCACAACCCC
66 TTATAATGTGATGAATGATTGGTTTAACCAATACATTCGAACTAATGCGGCTACTCCACAACCCC
62658091 CACTTCCAACAAATACACCCCCTCACCCACGATACCTCTGGTAATTGATCAGATGAGGCTGAATA
131 CACTTCCAACAAATACACCCCCTCACCCACGATACCTCTGGTAATTGATCAGATGAGGCTGAATA
62658156 AGCCCCCGGTTGACAGAATTCGAA
196 AGCCCCCGGTTGACAGAATTCGAA
* * * *
62658180 GGGACAGCGCCGATGGACTCTCAACCTATTGC-TAGCAATCAAAATGACGAGGCTAGACAAGCCT
1 GGGACAGCACCGATGGACTCTCAACCTATTACGT-GCAAACAAAATGACGAGGCTAGAAAAGCCT
62658244 TTTATAATGTGATGAATGATTGGTTTAACCAATACATTCGAACTAATGCGGCTACTCCACAACCC
65 TTTATAATGTGATGAATGATTGGTTTAACCAATACATTCGAACTAATGCGGCTACTCCACAACCC
62658309 CCACTTCCAACAAATACACCCCCTCACCCACGATACCTCTGGTAATTGATCAGATGAGGCTGAAT
130 CCACTTCCAACAAATACACCCCCTCACCCACGATACCTCTGGTAATTGATCAGATGAGGCTGAAT
62658374 AAGCCCCCGGTTGACAGAATTCGAA
195 AAGCCCCCGGTTGACAGAATTCGAA
62658399 AGCATGGGGC
Statistics
Matches: 212, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
218 1 0.00
219 211 1.00
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (219 bp):
GGGACAGCACCGATGGACTCTCAACCTATTACGTGCAAACAAAATGACGAGGCTAGAAAAGCCTT
TTATAATGTGATGAATGATTGGTTTAACCAATACATTCGAACTAATGCGGCTACTCCACAACCCC
CACTTCCAACAAATACACCCCCTCACCCACGATACCTCTGGTAATTGATCAGATGAGGCTGAATA
AGCCCCCGGTTGACAGAATTCGAA
Found at i:62662982 original size:24 final size:24
Alignment explanation
Indices: 62662886--62662981 Score: 140
Period size: 24 Copynumber: 4.0 Consensus size: 24
62662876 GCTTTATCAT
*
62662886 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
62662911 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
62662935 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
62662959 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
62662982 GCACTTCCTC
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
24 54 0.82
25 12 0.18
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:62663056 original size:20 final size:20
Alignment explanation
Indices: 62663031--62663097 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
62663021 TTATGAATAC
62663031 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
62663051 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
62663071 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
62663091 ACCATGT
1 ATCATGT
62663098 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:62663062 original size:11 final size:11
Alignment explanation
Indices: 62663031--62663086 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
62663021 TTATGAATAC
62663031 ATCATGTGCAT
1 ATCATGTGCAT
*
62663042 ATCA--TACAT
1 ATCATGTGCAT
62663051 ATCATGTGCAT
1 ATCATGTGCAT
*
62663062 ATCA--TACAT
1 ATCATGTGCAT
*
62663071 GTCATGTGCAT
1 ATCATGTGCAT
62663082 ATCAT
1 ATCAT
62663087 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:62663166 original size:25 final size:25
Alignment explanation
Indices: 62663134--62663181 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
62663124 ATATATAAAC
* * *
62663134 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
62663159 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
62663182 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:62671369 original size:24 final size:24
Alignment explanation
Indices: 62671336--62671466 Score: 219
Period size: 24 Copynumber: 5.5 Consensus size: 24
62671326 AAATGAATGC
62671336 AAGCCCTTTT-AGTAACTGGGGCAT
1 AAGCCCTTTTGA-TAACTGGGGCAT
* *
62671360 AAGCCTTTTTTATAACTGGGGCAT
1 AAGCCCTTTTGATAACTGGGGCAT
62671384 AAGCCCTTTTGATAACTGGGGCAT
1 AAGCCCTTTTGATAACTGGGGCAT
62671408 AAGCCCTTTTGATAACTGGGGCAT
1 AAGCCCTTTTGATAACTGGGGCAT
*
62671432 AAGCCTTTTTGATAACTGGGGCAT
1 AAGCCCTTTTGATAACTGGGGCAT
62671456 AAGCCCTTTTG
1 AAGCCCTTTTG
62671467 CACTTCCTCC
Statistics
Matches: 101, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
24 100 0.99
25 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (24 bp):
AAGCCCTTTTGATAACTGGGGCAT
Found at i:62671581 original size:20 final size:20
Alignment explanation
Indices: 62671515--62671572 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
62671505 TTATGAATAC
62671515 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
62671535 ATCATGTGCATATAATACAT
1 ATCATGTGCATATCATACAT
*
62671555 GTCATGTGCATATCATAC
1 ATCATGTGCATATCATAC
62671573 GTACCATGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:62675712 original size:39 final size:39
Alignment explanation
Indices: 62675658--62675771 Score: 174
Period size: 39 Copynumber: 2.9 Consensus size: 39
62675648 CAGTGATGTT
*
62675658 TATCCGGACTTAAGGTCCGCGGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
62675697 TATCCGGACTTAAGGTGCGCAGGCTATGTGCTGAAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
62675736 TAACCGGACTTAAGGTCTGCAGGCTACGTGCTGGAA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAA
62675772 ATATGTCCTG
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 67 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:62681754 original size:17 final size:17
Alignment explanation
Indices: 62681724--62681777 Score: 74
Period size: 17 Copynumber: 3.2 Consensus size: 17
62681714 AACCTTAAGT
*
62681724 TTTGAATTCCATAGCTA
1 TTTGAATACCATAGCTA
62681741 TTTG-ATACCTATAGCTA
1 TTTGAATACC-ATAGCTA
*
62681758 TTTGAATTCCATAGCTA
1 TTTGAATACCATAGCTA
62681775 TTT
1 TTT
62681778 TGTACATTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
16 4 0.12
17 25 0.76
18 4 0.12
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.44
Consensus pattern (17 bp):
TTTGAATACCATAGCTA
Found at i:62681880 original size:5 final size:5
Alignment explanation
Indices: 62681870--62681896 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
62681860 GATGTCAACC
62681870 ATAAA ATAAA ATAAA ATAAA ATAAA AT
1 ATAAA ATAAA ATAAA ATAAA ATAAA AT
62681897 TTTATTTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
ATAAA
Found at i:62684875 original size:13 final size:13
Alignment explanation
Indices: 62684857--62684882 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
62684847 TAGAGACACG
62684857 GGCGTGTGTCTCA
1 GGCGTGTGTCTCA
62684870 GGCGTGTGTCTCA
1 GGCGTGTGTCTCA
62684883 CATGACTATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.23, G:0.38, T:0.31
Consensus pattern (13 bp):
GGCGTGTGTCTCA
Found at i:62686267 original size:34 final size:33
Alignment explanation
Indices: 62686216--62686303 Score: 88
Period size: 34 Copynumber: 2.6 Consensus size: 33
62686206 CAGTGTTGAA
* **
62686216 CAGTCTGGG-CTTAAGCCCATATCAATTGCAGTAT
1 CAGTGTGGGCCTT-AGCCCATAT-AATAACAGTAT
* *
62686250 CAGTGTGGGCCTTAGCCCAATATAGTAATAGTAT
1 CAGTGTGGGCCTTAGCCC-ATATAATAACAGTAT
*
62686284 TAGTGTGGGCCTTAGCCCAT
1 CAGTGTGGGCCTTAGCCCAT
62686304 TTCAGTACAG
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
33 2 0.04
34 37 0.80
35 7 0.15
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.30
Consensus pattern (33 bp):
CAGTGTGGGCCTTAGCCCATATAATAACAGTAT
Found at i:62694114 original size:34 final size:33
Alignment explanation
Indices: 62694076--62694151 Score: 100
Period size: 34 Copynumber: 2.3 Consensus size: 33
62694066 ATATCAGTCG
*
62694076 CAGTATCAGCGTAG-GCCTTAGCCCAATACAGTAA
1 CAGTATCAGCGT-GTACCTTAGCCCAATACAGT-A
* *
62694110 CAGTATCAGTGTGTACCTTAGCCCATTACAGTA
1 CAGTATCAGCGTGTACCTTAGCCCAATACAGTA
62694143 CAGTATCAG
1 CAGTATCAG
62694152 AAATGCATAC
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
33 11 0.29
34 27 0.71
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (33 bp):
CAGTATCAGCGTGTACCTTAGCCCAATACAGTA
Found at i:62700941 original size:46 final size:46
Alignment explanation
Indices: 62700784--62700949 Score: 156
Period size: 46 Copynumber: 3.6 Consensus size: 46
62700774 GGACGACTCG
* * * *
62700784 TTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCCGAACTCA
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCA
*** ** * * * *
62700830 TTGAGTTGAGTCCGAGTTCGAGAGATTTA-AC-TAGGCATCCGAGCTCG
1 TTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAACGC--CCGAGCTCA
*
62700877 TTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAGCTCA
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCA
*
62700923 TTGAGTTGAATCCGAGTTCACTTATGG
1 TTGAGTTGAGTCCGAGTTCACTTATGG
62700950 GCGCTATTTG
Statistics
Matches: 91, Mismatches: 24, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
45 2 0.02
46 56 0.62
47 30 0.33
48 3 0.03
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.30
Consensus pattern (46 bp):
TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCA
Found at i:62712573 original size:40 final size:40
Alignment explanation
Indices: 62712475--62712737 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
62712465 TCCTCGTTCA
* * * * *
62712475 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
62712514 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
62712554 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
62712594 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
62712634 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
62712674 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
62712714 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
62712738 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:62720526 original size:40 final size:40
Alignment explanation
Indices: 62720428--62720690 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
62720418 TCCTCGTTCA
* * * * *
62720428 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
62720467 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
62720507 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
62720547 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
62720587 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
62720627 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
62720667 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
62720691 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:62725114 original size:18 final size:18
Alignment explanation
Indices: 62725091--62725129 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
62725081 TAAAGGACCT
62725091 TGACACTCTTTCTCTTAA
1 TGACACTCTTTCTCTTAA
*
62725109 TGACACTCTTTCTCTTCA
1 TGACACTCTTTCTCTTAA
62725127 TGA
1 TGA
62725130 GCTCACTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.21, C:0.28, G:0.08, T:0.44
Consensus pattern (18 bp):
TGACACTCTTTCTCTTAA
Found at i:62733786 original size:48 final size:48
Alignment explanation
Indices: 62733727--62733996 Score: 240
Period size: 48 Copynumber: 5.6 Consensus size: 48
62733717 TATGTGTGCC
* *
62733727 AGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCATTATTATGAGAGCT
* * * * * *
62733775 AGTGTAAGACCATGTCT-GAGACATAGCATCAGCCTCAATATGTA-AGCC
1 AGTGTAAGACCATGTCTGGA-ACATGGCATCGGCATTATTATG-AGAGCT
* * * * * *
62733823 AGTGTAAGACCATATTTGGAACATGCCATTGACATTGTTATGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCATTATTATGAGAGCT
* * * * * * * *
62733871 AGTGTAAGACCATGCCTGGGATATGGCATCGGCCTCAATATGTGAGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCATTATTATGAGAGCT
* * * * *
62733919 AGTATAAGACCATGTTTGGAACATGGCATCGGC-TTTTTACGAAAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCATTATTATGAGAGCT
* *
62733966 AGTGTAAGACCATATCTAGAACATGGCATCG
1 AGTGTAAGACCATGTCTGGAACATGGCATCG
62733997 ACATCTTACC
Statistics
Matches: 168, Mismatches: 50, Indels: 9
0.74 0.22 0.04
Matches are distributed among these distances:
47 37 0.22
48 128 0.76
49 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGAACATGGCATCGGCATTATTATGAGAGCT
Found at i:62733881 original size:96 final size:96
Alignment explanation
Indices: 62733724--62733995 Score: 386
Period size: 96 Copynumber: 2.8 Consensus size: 96
62733714 GGTTATGTGT
62733724 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACCATG
*
62733789 TCTGAGACATAGCATCAGCCTCAATATGTAA
66 TCTGAGACATGGCATCAGCCTCAATATGTAA
* * * *
62733820 GCCAGTGTAAGACCATATTTGGAACATGCCATTGACATTGTTATGAGAGCTAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACCATG
* * * * *
62733885 CCTGGGATATGGCATCGGCCTCAATATGTGA
66 TCTGAGACATGGCATCAGCCTCAATATGTAA
* * * * *
62733916 GCCAGTATAAGACCATGTTTGGAACATGGCATCGGC-TTTTTACGAAAGCTAGTGTAAGACCATA
1 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACCATG
62733980 TCT-AGAACATGGCATC
66 TCTGAG-ACATGGCATC
62733996 GACATCTTAC
Statistics
Matches: 153, Mismatches: 22, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
94 1 0.01
95 35 0.23
96 117 0.76
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (96 bp):
GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACCATG
TCTGAGACATGGCATCAGCCTCAATATGTAA
Found at i:62736474 original size:43 final size:42
Alignment explanation
Indices: 62736431--62736599 Score: 171
Period size: 43 Copynumber: 4.0 Consensus size: 42
62736421 AGGATTTCGA
62736431 TATTTGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCG
1 TATTTGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCG
* * **
62736473 -ATTTGATATTTACGTATAAGACCATGTCTGAGACATCAGCATCG
1 TATTTG--ATTT-CGTGTAAGACCATGTCTGGGACATTGGCATCG
* * *
62736517 TATTTGATTTCGTGTAAGACCTTGTCTGGGATAGTGGCATCG
1 TATTTGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCG
* * * * *
62736559 ATATTTAATTAT-ATGTAAGACCACGTCTAGGACGTTGGCAT
1 -TATTTGATT-TCGTGTAAGACCATGTCTGGGACATTGGCAT
62736600 TGTACGAGCT
Statistics
Matches: 102, Mismatches: 19, Indels: 11
0.77 0.14 0.08
Matches are distributed among these distances:
41 5 0.05
42 25 0.25
43 38 0.37
44 29 0.28
45 5 0.05
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (42 bp):
TATTTGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCG
Found at i:62736493 original size:44 final size:41
Alignment explanation
Indices: 62736432--62736560 Score: 159
Period size: 44 Copynumber: 3.0 Consensus size: 41
62736422 GGATTTCGAT
62736432 ATTTGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCG
1 ATTTGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCG
* * **
62736473 ATTTGATATTTACGTATAAGACCATGTCTGAGACATCAGCATCG
1 ATTTG--ATTT-CGTGTAAGACCATGTCTGGGACATTGGCATCG
* * *
62736517 TATTTGATTTCGTGTAAGACCTTGTCTGGGATAGTGGCATCG
1 -ATTTGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCG
62736559 AT
1 AT
62736561 ATTTAATTAT
Statistics
Matches: 73, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
41 7 0.10
42 25 0.34
43 8 0.11
44 28 0.38
45 5 0.07
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.35
Consensus pattern (41 bp):
ATTTGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCG
Found at i:62743910 original size:44 final size:43
Alignment explanation
Indices: 62743843--62744015 Score: 185
Period size: 43 Copynumber: 4.0 Consensus size: 43
62743833 CATAGGATTT
*
62743843 TCGATATTTGATTTCGTGTAAGACCATGTCTGGGACGTTGGCA
1 TCGATATTTGATTACGTGTAAGACCATGTCTGGGACGTTGGCA
* * * *
62743886 TCGAT-TTGAGATTTACGTGTAAGACCATGTCTGGGACATCGGTA
1 TCGATATT-TGA-TTACGTGTAAGACCATGTCTGGGACGTTGGCA
*
62743930 TC-ATATTTGATTACGTGTAAGACCCTGTCTGAGG-CAG-TGGCA
1 TCGATATTTGATTACGTGTAAGACCATGTCTG-GGAC-GTTGGCA
* * *
62743972 TCGATATTTGATTACATGTAAGACCACGTCTAGGA-GATTGGCA
1 TCGATATTTGATTACGTGTAAGACCATGTCTGGGACG-TTGGCA
62744015 T
1 T
62744016 TGTACGAGCT
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
41 1 0.01
42 30 0.28
43 44 0.41
44 32 0.30
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
TCGATATTTGATTACGTGTAAGACCATGTCTGGGACGTTGGCA
Found at i:62751939 original size:129 final size:129
Alignment explanation
Indices: 62751737--62752535 Score: 1598
Period size: 129 Copynumber: 6.2 Consensus size: 129
62751727 TGTTTTTGTG
62751737 TAAGACCACGTCTGGGACGTTGGCAACGATTTCTATTTTACATGTATGACCATGTCTGGGACATC
1 TAAGACCACGTCTGGGACGTTGGCAACGATTTCTATTTTACATGTATGACCATGTCTGGGACATC
62751802 GACATCGTCTCTGATTTCGTGTAAGACCCTGTCTAAGACAGTGGCATCGATGTTTGATTACATC
66 GACATCGTCTCTGATTTCGTGTAAGACCCTGTCTAAGACAGTGGCATCGATGTTTGATTACATC
62751866 TAAGACCACGTCTGGGACGTTGGCAACGATTTCTATTTTACATGTATGACCATGTCTGGGACATC
1 TAAGACCACGTCTGGGACGTTGGCAACGATTTCTATTTTACATGTATGACCATGTCTGGGACATC
62751931 GACATCGTCTCTGATTTCGTGTAAGACCCTGTCTAAGACAGTGGCATCGATGTTTGATTACATC
66 GACATCGTCTCTGATTTCGTGTAAGACCCTGTCTAAGACAGTGGCATCGATGTTTGATTACATC
62751995 TAAGACCACGTCTGGGACGTTGGCAACGATTTCTATTTTACATGTATGACCATGTCTGGGACATC
1 TAAGACCACGTCTGGGACGTTGGCAACGATTTCTATTTTACATGTATGACCATGTCTGGGACATC
62752060 GACATCGTCTCTGATTTCGTGTAAGACCCTGTCTAAGACAGTGGCATCGATGTTTGATTACATC
66 GACATCGTCTCTGATTTCGTGTAAGACCCTGTCTAAGACAGTGGCATCGATGTTTGATTACATC
62752124 TAAGACCACGTCTGGGACGTTGGCAACGATTTCTATTTTACATGTATGACCATGTCTGGGACATC
1 TAAGACCACGTCTGGGACGTTGGCAACGATTTCTATTTTACATGTATGACCATGTCTGGGACATC
62752189 GACATCGTCTCTGATTTCGTGTAAGACCCTGTCTAAGACAGTGGCATCGATGTTTGATTACATC
66 GACATCGTCTCTGATTTCGTGTAAGACCCTGTCTAAGACAGTGGCATCGATGTTTGATTACATC
62752253 TAAGACCACGTCTGGGACGTTGGCAACGATTTCTATTTTACATGTATGACCATGTCTGGGACATC
1 TAAGACCACGTCTGGGACGTTGGCAACGATTTCTATTTTACATGTATGACCATGTCTGGGACATC
62752318 GACATCGTCTCTGATTTCGTGTAAGACCCTGTCTAAGACAGTGGCATCGATGTTTGATTACATC
66 GACATCGTCTCTGATTTCGTGTAAGACCCTGTCTAAGACAGTGGCATCGATGTTTGATTACATC
62752382 TAAGACCACGTCTGGGACGTTGGCAACGATTTCTATTTTACATGTATGACCATGTCTGGGACATC
1 TAAGACCACGTCTGGGACGTTGGCAACGATTTCTATTTTACATGTATGACCATGTCTGGGACATC
62752447 GACATCGTCTCTGATTTCGTGTAAGACCCTGTCTAAGACAGTGGCATCGATGTTTGATTACATC
66 GACATCGTCTCTGATTTCGTGTAAGACCCTGTCTAAGACAGTGGCATCGATGTTTGATTACATC
62752511 TAAGACCACGTCTGGGACGTTGGCA
1 TAAGACCACGTCTGGGACGTTGGCA
62752536 TTGTATATGT
Statistics
Matches: 670, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
129 670 1.00
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (129 bp):
TAAGACCACGTCTGGGACGTTGGCAACGATTTCTATTTTACATGTATGACCATGTCTGGGACATC
GACATCGTCTCTGATTTCGTGTAAGACCCTGTCTAAGACAGTGGCATCGATGTTTGATTACATC
Found at i:62753535 original size:39 final size:39
Alignment explanation
Indices: 62753481--62753564 Score: 132
Period size: 39 Copynumber: 2.2 Consensus size: 39
62753471 TACTGCTCGT
*
62753481 GTGTGGCACACGGGCTGGCACATGGGCGTGTTGTCGGCC
1 GTGTGGCACACGGGCTGGCACATGGGCGTGTGGTCGGCC
* *
62753520 GTGTGGCATAGGGGCTGGCACATGGGCGTGTGGTCGGCC
1 GTGTGGCACACGGGCTGGCACATGGGCGTGTGGTCGGCC
*
62753559 ATGTGG
1 GTGTGG
62753565 ACCAGTTAGT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.11, C:0.21, G:0.46, T:0.21
Consensus pattern (39 bp):
GTGTGGCACACGGGCTGGCACATGGGCGTGTGGTCGGCC
Found at i:62774464 original size:12 final size:12
Alignment explanation
Indices: 62774443--62774475 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
62774433 TATGTATCGC
*
62774443 TACTGCTACTAT
1 TACTGTTACTAT
62774455 TACTGTTACTAT
1 TACTGTTACTAT
62774467 TACTGTTAC
1 TACTGTTAC
62774476 AGTGTATTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.09, T:0.45
Consensus pattern (12 bp):
TACTGTTACTAT
Found at i:62776925 original size:48 final size:48
Alignment explanation
Indices: 62776866--62777134 Score: 301
Period size: 48 Copynumber: 5.6 Consensus size: 48
62776856 TATGTGACCA
*
62776866 AGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGACATTGTTATGAGAGCT
* *** *
62776914 AGTGTAAGACCATGTCTAGG-ACATGGCATC-AGCCTCAATATGTGAGCT
1 AGTGTAAGACCATGTCT-GGAACATGGCATCGA-CATTGTTATGAGAGCT
* * *
62776962 AGTGTAAGACCATGTTTGGAACATGGAATCGAGATTGTTATGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGACATTGTTATGAGAGCT
* * * *** *
62777010 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTA-AGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGACATTGTTATG-AGAGCT
* * **
62777058 AGTGTAAGACCATGTCTGGAATATGGCATCGACTTTGTTGCGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGACATTGTTATGAGAGCT
*
62777106 AGTGTAAGACCATGTCTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGAACATGGCAT
62777135 TGGCATCTTA
Statistics
Matches: 179, Mismatches: 36, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
47 4 0.02
48 171 0.96
49 4 0.02
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGAACATGGCATCGACATTGTTATGAGAGCT
Found at i:62777020 original size:96 final size:96
Alignment explanation
Indices: 62776856--62777134 Score: 441
Period size: 96 Copynumber: 2.9 Consensus size: 96
62776846 ATACTAGGGT
*
62776856 TATGTGACCAAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGCTAGTGTAA
1 TATGTGAGCAAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGCTAGTGTAA
*
62776921 GACCATGTCTAGGACATGGCATCAGCCTCAA
66 GACCATGTCTGGGACATGGCATCAGCCTCAA
* * *
62776952 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGAATCGAGATTGTTATGAGAGCTAGTGTAA
1 TATGTGAGCAAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGCTAGTGTAA
*
62777017 GACCATGTCTGGGACATGGCATCGGCCTCAA
66 GACCATGTCTGGGACATGGCATCAGCCTCAA
* * * * * **
62777048 TATGTAAGCCAGTGTAAGACCATGTCTGGAATATGGCATCGACTTTGTTGCGAGAGCTAGTGTAA
1 TATGTGAGCAAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGCTAGTGTAA
62777113 GACCATGTCTGGGACATGGCAT
66 GACCATGTCTGGGACATGGCAT
62777135 TGGCATCTTA
Statistics
Matches: 168, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
96 168 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (96 bp):
TATGTGAGCAAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGCTAGTGTAA
GACCATGTCTGGGACATGGCATCAGCCTCAA
Found at i:62778130 original size:13 final size:12
Alignment explanation
Indices: 62778112--62778157 Score: 56
Period size: 13 Copynumber: 3.7 Consensus size: 12
62778102 GCTGTGAAAG
62778112 GGACACGGACCAT
1 GGACACGG-CCAT
62778125 GGACACAGGCCAT
1 GGACAC-GGCCAT
* *
62778138 GGACACGGGCGT
1 GGACACGGCCAT
62778150 GGACACGG
1 GGACACGG
62778158 GCTAGGGGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
12 12 0.40
13 16 0.53
14 2 0.07
ACGTcount: A:0.26, C:0.28, G:0.39, T:0.07
Consensus pattern (12 bp):
GGACACGGCCAT
Found at i:62783873 original size:27 final size:27
Alignment explanation
Indices: 62783843--62784020 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
62783833 ATATCGAGTC
* *
62783843 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
62783870 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
62783897 CGCACACTTAGTGCCACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
62783925 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
62783952 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
62783979 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
62784006 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62784021 GTACAATTTA
Statistics
Matches: 131, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
27 105 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:62783982 original size:82 final size:81
Alignment explanation
Indices: 62783864--62784019 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
62783854 TGCTATATAA
*
62783864 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCCACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
62783929 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
62783946 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
62784010 CACTTAGTGC
65 CACTTAGTGC
62784020 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:62789911 original size:132 final size:129
Alignment explanation
Indices: 62789655--62790036 Score: 396
Period size: 132 Copynumber: 2.9 Consensus size: 129
62789645 AGTATGAGTG
* * * * *
62789655 AAATTCTAAAGGAATC-TTCGATCA--TTGAACGAACGGGAAATCGCAACCTAGCACGA-TAGGG
1 AAATTCTAAAGGGA-CATTCGATCACTTTGAGCAAACGGGAAATTGCAACCCAGCAC-ATTAGGG
* ** ** *
62789716 CACGATTCTCGAATTGTCAAACATCGAGTATTACCTTCATTTTAAA-GAGTTTTTAGAAAACATG
64 CACGATT-TCGAATTGTCAAATATCGAACATCGCCTTCGTTTTAAAGGA-TTTTTA-AAAACATG
*
62789780 AACG
126 AACA
* * *
62789784 AGATTCTAAAGGGACATTCGATTACTTTGAGCAAACGAGAAATTGCAACCCAGCACATTAGGGCA
1 AAATTCTAAAGGGACATTCGATCACTTTGAGCAAACGGGAAATTGCAACCCAGCACATTAGGGCA
* *
62789849 CGATTTAGCGAATTGTCAAATATCGAACATCGTCTTCGTTTTAAAGGATTTCTAAAAGACATGAA
66 CGATTT--CGAATTGTCAAATATCGAACATCGCCTTCGTTTTAAAGGATTTTTAAAA-ACATGAA
62789914 CA
128 CA
* * * * * *
62789916 AAATTTTGAAGGGATATTCGATCATTTTGAGCAAACGGGAAATTGCAACCCAACACGTTAGGGCA
1 AAATTCTAAAGGGACATTCGATCACTTTGAGCAAACGGGAAATTGCAACCCAGCACATTAGGGCA
* * * *
62789981 CGATTCCTCGAATTGCCAAATATCAAACCTCGCCTTCGTTTTAAAGAATTTTTAAA
66 CGATT--TCGAATTGTCAAATATCGAACATCGCCTTCGTTTTAAAGGATTTTTAAA
62790037 TGAATAATTA
Statistics
Matches: 211, Mismatches: 32, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
128 1 0.00
129 19 0.09
130 2 0.01
131 40 0.19
132 146 0.69
133 2 0.01
134 1 0.00
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (129 bp):
AAATTCTAAAGGGACATTCGATCACTTTGAGCAAACGGGAAATTGCAACCCAGCACATTAGGGCA
CGATTTCGAATTGTCAAATATCGAACATCGCCTTCGTTTTAAAGGATTTTTAAAAACATGAACA
Found at i:62802055 original size:42 final size:42
Alignment explanation
Indices: 62802024--62802121 Score: 121
Period size: 42 Copynumber: 2.3 Consensus size: 42
62802014 TTTAGTTGAT
* *
62802024 GATGGACTTATGTGCTAGTATAATTT-CTTCAGTATATCCGAA
1 GATGCACTTATGTGATAGTAT-ATTTGCTTCAGTATATCCGAA
*
62802066 GATGCACTTATGTGATAGTATATTTGCTTC-GTTACATCC-AA
1 GATGCACTTATGTGATAGTATATTTGCTTCAG-TATATCCGAA
62802107 TGATGCACTTATGTG
1 -GATGCACTTATGTG
62802122 CCAACATGAT
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
41 7 0.14
42 43 0.86
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (42 bp):
GATGCACTTATGTGATAGTATATTTGCTTCAGTATATCCGAA
Found at i:62802232 original size:43 final size:44
Alignment explanation
Indices: 62802185--62802280 Score: 126
Period size: 43 Copynumber: 2.2 Consensus size: 44
62802175 TGGTTCGTCT
*
62802185 GATGATGCATCC-CGTATTTTAGTATAATTGCTTCGAG-TTACCC
1 GATGATGCATCCTCGTATGTTAGTATAATTGCTTCG-GCTTACCC
* *
62802228 GATGATACA-CCTCGTATGTTAGTATAATTGCTTCGGCTTTCCC
1 GATGATGCATCCTCGTATGTTAGTATAATTGCTTCGGCTTACCC
*
62802271 TATGATGCAT
1 GATGATGCAT
62802281 TATGTGTGCA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
42 3 0.07
43 42 0.93
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.38
Consensus pattern (44 bp):
GATGATGCATCCTCGTATGTTAGTATAATTGCTTCGGCTTACCC
Found at i:62812761 original size:47 final size:48
Alignment explanation
Indices: 62812460--62812779 Score: 205
Period size: 47 Copynumber: 6.7 Consensus size: 48
62812450 GGTATAATTT
* * *
62812460 CGATGCCATGTCCCAGACATTGTCTTACACTGGCTCATCCGTCAAGT--
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCCATCATGTGC
* * * * *
62812507 CGATGCCATGTCCTAGACATGGTCTTACACTGACTATCCA-AATTGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCCATCA-TG-TGC
* * *
62812556 TGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAT-ATCCGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-CATCAT--GTGC
* * * * * * ** *
62812606 CGATGCCCTATCCCAAATATGGTCTTACACTGACACCTCTGT-ACGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCCATCATGTGC
* * * * *
62812654 CGATG-CATGTTCCAGACAT-GTCTTACACTAGCTCTTGTC-TCA-ATAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-T-CCATCATGTGC
* *
62812700 CGATGCCATCTCCCAGACATGGTCTTACACTGGCTCT-TATCATGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCCATCATGT-GC
* *
62812748 TGATG-CATGTCCCAGACAT-GTCTTACAATGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC
62812780 ACACAAATAA
Statistics
Matches: 208, Mismatches: 48, Indels: 35
0.71 0.16 0.12
Matches are distributed among these distances:
45 2 0.01
46 39 0.19
47 69 0.33
48 28 0.13
49 33 0.16
50 33 0.16
51 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCCATCATGTGC
Found at i:62819817 original size:43 final size:43
Alignment explanation
Indices: 62819756--62819873 Score: 137
Period size: 43 Copynumber: 2.7 Consensus size: 43
62819746 CACATCTATT
* * * *
62819756 ATGAACTCAGACCTCTCAATGACCTTGAATGCTCGTATCCATA
1 ATGAACTCGGACCTCTCAACGACCTCGAATGCTCGCATCCATA
* * *
62819799 ATGAACTCGGACCTCTCAACGAGCTCGGATGCTTGCATCCATA
1 ATGAACTCGGACCTCTCAACGACCTCGAATGCTCGCATCCATA
* * * *
62819842 ATGAACTTGGACCTCTCCACGAGCTCGGATGC
1 ATGAACTCGGACCTCTCAACGACCTCGAATGC
62819874 CACATATCTC
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 66 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (43 bp):
ATGAACTCGGACCTCTCAACGACCTCGAATGCTCGCATCCATA
Found at i:62826457 original size:40 final size:41
Alignment explanation
Indices: 62826413--62826522 Score: 111
Period size: 40 Copynumber: 2.7 Consensus size: 41
62826403 TATATTTGGT
62826413 ACTTAATGTGC-ATTTCGAGATAGCTTCGGCTATATAG-AGC
1 ACTTAATGTGCGATTTCGAGATAGCTTCGGCTATA-AGTAGC
* * * * *
62826453 ACTTAGTGTGCGAATTGGA-ATAGCTTCAGCTATAAGTGGC
1 ACTTAATGTGCGATTTCGAGATAGCTTCGGCTATAAGTAGC
**
62826493 AC-TAATTGTGCGATACCGAGATAGCTTCGG
1 ACTTAA-TGTGCGATTTCGAGATAGCTTCGG
62826523 TTTAATATGA
Statistics
Matches: 55, Mismatches: 11, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
39 4 0.07
40 37 0.67
41 14 0.25
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (41 bp):
ACTTAATGTGCGATTTCGAGATAGCTTCGGCTATAAGTAGC
Found at i:62826561 original size:44 final size:45
Alignment explanation
Indices: 62826489--62826593 Score: 119
Period size: 44 Copynumber: 2.4 Consensus size: 45
62826479 CAGCTATAAG
* *
62826489 TGGCACTAATTGTGCGATACCGAGATAGCTTCGGTTTAA-TA-TGA
1 TGGCACTAAGTGTGCGATACCGAGATAGCTTCAG-TTAATTATTGA
* * *
62826533 TGGCACTAAGTGTGCGATATC-ATTATAGCTTCAGTTAATTATTTA
1 TGGCACTAAGTGTGCGATACCGA-GATAGCTTCAGTTAATTATTGA
62826578 T-GCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
62826594 GTTCTTAGAG
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
43 5 0.09
44 45 0.85
45 3 0.06
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (45 bp):
TGGCACTAAGTGTGCGATACCGAGATAGCTTCAGTTAATTATTGA
Found at i:62836535 original size:46 final size:46
Alignment explanation
Indices: 62836482--62836709 Score: 289
Period size: 46 Copynumber: 5.0 Consensus size: 46
62836472 GCTCTCTGAA
* * *
62836482 ATGAAATGCGTAAGACCATAGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
62836528 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
62836574 ATGAAACGAATAAGACCATGGTTGAAAGATACCATGGCAACTTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
62836620 ATGAAAAG-GATAAGACCATGGTTGAAAGATTCCATGGCAACATGAC
1 ATGAAATGAG-TAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
62836666 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
62836710 TCAAAGATAA
Statistics
Matches: 159, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
45 1 0.01
46 157 0.99
47 1 0.01
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:62845556 original size:43 final size:44
Alignment explanation
Indices: 62845508--62845759 Score: 205
Period size: 43 Copynumber: 5.9 Consensus size: 44
62845498 GCAACACAAC
62845508 GCATCATC-GAATAAACCGAAGGAAAT-ATACTGGCACACATAGT
1 GCATCATCAG-ATAAACCGAAGGAAATCATACTGGCACACATAGT
* * * *
62845551 GCATCATCAGATAAATCGAA-GCAATCATACTGACGCACATAGT
1 GCATCATCAGATAAACCGAAGGAAATCATACTGGCACACATAGT
* * * * * * *
62845594 GCATCATCAAATTAACTGAA-GCAACCATACTAGCAAACATAGT
1 GCATCATCAGATAAACCGAAGGAAATCATACTGGCACACATAGT
* * * ** * *
62845637 GCATCATCAAATAAA-CTAAAGATTTCATACTGGCACGCAAAGT
1 GCATCATCAGATAAACCGAAGGAAATCATACTGGCACACATAGT
** * *
62845680 GCATCATCAGATAAATTGAA--ACAATCATATTGGCACAAATAGT
1 GCATCATCAGATAAACCGAAGGA-AATCATACTGGCACACATAGT
* * *
62845723 GCATCATTAGATAAACCTAGGGAAAT-ATACTGGCACA
1 GCATCATCAGATAAACCGAAGGAAATCATACTGGCACA
62845760 AAGGTGCTTA
Statistics
Matches: 163, Mismatches: 39, Indels: 14
0.75 0.18 0.06
Matches are distributed among these distances:
42 7 0.04
43 149 0.91
44 6 0.04
45 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (44 bp):
GCATCATCAGATAAACCGAAGGAAATCATACTGGCACACATAGT
Found at i:62848917 original size:15 final size:16
Alignment explanation
Indices: 62848899--62848928 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
62848889 CAAATAACAG
62848899 AAATTAAAAT-TAATT
1 AAATTAAAATATAATT
62848914 AAATTAAAATATAAT
1 AAATTAAAATATAAT
62848929 AACTAAATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
AAATTAAAATATAATT
Found at i:62852640 original size:30 final size:28
Alignment explanation
Indices: 62852599--62852654 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 28
62852589 CACGGCCAGA
*
62852599 CACACGCCCATGTCAATGGCCCGTGTCCCT
1 CACACGCCCATGAC-AT-GCCCGTGTCCCT
*
62852629 CACACGGCCATGACATGCCCGTGTCC
1 CACACGCCCATGACATGCCCGTGTCC
62852655 TAGCCCGTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 10 0.42
29 2 0.08
30 12 0.50
ACGTcount: A:0.18, C:0.43, G:0.21, T:0.18
Consensus pattern (28 bp):
CACACGCCCATGACATGCCCGTGTCCCT
Found at i:62853825 original size:48 final size:46
Alignment explanation
Indices: 62853602--62854061 Score: 305
Period size: 46 Copynumber: 9.8 Consensus size: 46
62853592 ATGGGTAAGG
* * *
62853602 TGCCGATGCCATGTCCCAGACACGATCTTACACTGGCTCAT-ATCTCAA
1 TGCCGATG-CATGTCCCAGACATG-TCTTACACTAGCTC-TCGTCTCAA
** * * * * *
62853650 -GTTGATGACATGTTCCAGACACGGTCTTACACT-GACTATCATCTC-G
1 TGCCGATG-CATGTCCCAGACA-TGTCTTACACTAG-CTCTCGTCTCAA
* * * * * *
62853696 TACACGGTGCATGTCCCAGACATGTTTTACACTGGCT-TACATCTCGA
1 TGC-CGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAA
* * * *
62853743 GGCCGATGCATGTCCTAAACATGTCTTACACTAGCTCTCGTCTTAA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAA
* * * * *
62853789 TGCCAATGCGATGTCCCAAACATGGTCTTACACTAGCATAT-ATCTCGA
1 TGCCGATGC-ATGTCCCAGACAT-GTCTTACACTAGC-TCTCGTCTCAA
* * *
62853837 GGCCAATGCATG-CCCTAGACATGTCTTACACTTGCTCTCGTCTCAA
1 TGCCGATGCATGTCCC-AGACATGTCTTACACTAGCTCTCGTCTCAA
* * * *
62853883 TGTCGATGCCATGCCCCGGACATAGTCTTACACTGGCT-TACGTCT-AGA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-CGTCTCA-A
*
62853931 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAA
* * * * *
62853977 TGCCGATGCCATATCCCATACATGGTCTTACATTGGCTCTC--AT-AA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCAA
62854022 TGTGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 --T-GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
62854062 ACAAAAAAAT
Statistics
Matches: 328, Mismatches: 58, Indels: 54
0.75 0.13 0.12
Matches are distributed among these distances:
45 5 0.02
46 124 0.38
47 118 0.36
48 79 0.24
49 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAA
Found at i:62853840 original size:94 final size:94
Alignment explanation
Indices: 62853602--62854061 Score: 468
Period size: 94 Copynumber: 4.9 Consensus size: 94
62853592 ATGGGTAAGG
* * * * * ** *
62853602 TGCCGATGCCATGTCCCAGACACGATCTTACACTGGCTCATATCTC-AAGTTGATGACATGTTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGCCGATG-CATGTCCC
* * * *
62853666 AGACACGGTCTTACACT-GACTATCATCTC-G
65 AGACA-TGTCTTACACTAG-CTCTCGTCTCAA
* * * *
62853696 TACACGGTG-CATGTCCCAGACAT-GTTTTACACTGGCTTACATCTCGAGGCCGATGCATGTCCT
1 TGC-CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCCC
* *
62853759 AAACATGTCTTACACTAGCTCTCGTCTTAA
65 AGACATGTCTTACACTAGCTCTCGTCTCAA
* * * * * * *
62853789 TGCCAATGCGATGTCCCAAACATGGTCTTACACTAGCATATATCTCGAGGCCAATGCATG-CCCT
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCCC-
*
62853853 AGACATGTCTTACACTTGCTCTCGTCTCAA
65 AGACATGTCTTACACTAGCTCTCGTCTCAA
* * * * * *
62853883 TGTCGATGCCATGCCCCGGACATAGTCTTACACTGGCTTACGTCTAGAGGCCGATGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCCCA
62853948 GACATGTCTTACACTAGCTCTCGTCTCAA
66 GACATGTCTTACACTAGCTCTCGTCTCAA
* * * * *
62853977 TGCCGATGCCATATCCCATACATGGTCTTACATTGGCTCT-CATAAT-GTGGCCGATGCATGTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACAT-CTCGAGGCCGATGCATGTCC
62854040 CAGACATGTCTTACACTAGCTC
64 CAGACATGTCTTACACTAGCTC
62854062 ACAAAAAAAT
Statistics
Matches: 300, Mismatches: 56, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
92 20 0.07
93 45 0.15
94 226 0.75
95 9 0.03
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (94 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCCCA
GACATGTCTTACACTAGCTCTCGTCTCAA
Found at i:62855509 original size:44 final size:45
Alignment explanation
Indices: 62855410--62855517 Score: 121
Period size: 44 Copynumber: 2.4 Consensus size: 45
62855400 TCCGGCCTAT
** * * * *
62855410 TGCAACTTCAGAGGA-ATTGGATTAGTTCGCTTTAATCTGCTCCAT
1 TGCAACTTCAG-GGAGATAAGATTAGTTAGCTTCAATCTACTCCAC
* *
62855455 TACAATTTCAGGGAGATAAGATTAG-TAGCTTCAATCTACTCCAC
1 TGCAACTTCAGGGAGATAAGATTAGTTAGCTTCAATCTACTCCAC
62855499 TGCAACTTCAGGGAGATAA
1 TGCAACTTCAGGGAGATAA
62855518 AATTTGCTAT
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
44 35 0.67
45 17 0.33
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (45 bp):
TGCAACTTCAGGGAGATAAGATTAGTTAGCTTCAATCTACTCCAC
Found at i:62856546 original size:48 final size:48
Alignment explanation
Indices: 62856450--62856726 Score: 284
Period size: 48 Copynumber: 5.8 Consensus size: 48
62856440 TCTCATATCG
* * **** * * *
62856450 ATGCCATGTCCCAGACATGGTCTTAGACAAAATAACTTATTGATGCCA
1 ATGCCATATCCCAGACATGGTCTTACATGGGATCACATATAGATGCCA
* * * * *
62856498 ATGTCATATCCCAAATATGGTCTTACAAGGGATCACATATAGACGCCA
1 ATGCCATATCCCAGACATGGTCTTACATGGGATCACATATAGATGCCA
* * *
62856546 ATTCCATATCCCAGATATGGTCTTACATGGGATCACATATCGATGCCA
1 ATGCCATATCCCAGACATGGTCTTACATGGGATCACATATAGATGCCA
* * * * * * *
62856594 ATGCCATGTCTCAGACATGGTATTACACGAGATCACATGTCGATGCCA
1 ATGCCATATCCCAGACATGGTCTTACATGGGATCACATATAGATGCCA
* * * * *
62856642 ATGCCATGTCCTAAACATGGTCTCACATGGGATCACATATTGATGCCA
1 ATGCCATATCCCAGACATGGTCTTACATGGGATCACATATAGATGCCA
*
62856690 ATGCCATATCCCAGACATGTTCTTACATGGGATCACA
1 ATGCCATATCCCAGACATGGTCTTACATGGGATCACA
62856727 CATAACCCTA
Statistics
Matches: 188, Mismatches: 41, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 188 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (48 bp):
ATGCCATATCCCAGACATGGTCTTACATGGGATCACATATAGATGCCA
Found at i:62856640 original size:144 final size:144
Alignment explanation
Indices: 62856450--62856726 Score: 374
Period size: 144 Copynumber: 1.9 Consensus size: 144
62856440 TCTCATATCG
* * * * * *
62856450 ATGCCATGTCCCAGACATGGTCTTAGACAAAATAACTTATTGATGCCAATGTCATATCCCAAATA
1 ATGCCATGTCCCAGACATGGTATTACACAAAATAACATATCGATGCCAATGCCATATCCCAAACA
* * *
62856515 TGGTCTTACAAGGGATCACATATAGACGCCAATTCCATATCCCAGATATGGTCTTACATGGGATC
66 TGGTCTCACAAGGGATCACATATAGACGCCAATGCCATATCCCAGACATGGTCTTACATGGGATC
62856580 ACATATCGATGCCA
131 ACATATCGATGCCA
* * * * * * *
62856594 ATGCCATGTCTCAGACATGGTATTACACGAGATCACATGTCGATGCCAATGCCATGTCCTAAACA
1 ATGCCATGTCCCAGACATGGTATTACACAAAATAACATATCGATGCCAATGCCATATCCCAAACA
* * * *
62856659 TGGTCTCACATGGGATCACATATTGATGCCAATGCCATATCCCAGACATGTTCTTACATGGGATC
66 TGGTCTCACAAGGGATCACATATAGACGCCAATGCCATATCCCAGACATGGTCTTACATGGGATC
62856724 ACA
131 ACA
62856727 CATAACCCTA
Statistics
Matches: 113, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
144 113 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (144 bp):
ATGCCATGTCCCAGACATGGTATTACACAAAATAACATATCGATGCCAATGCCATATCCCAAACA
TGGTCTCACAAGGGATCACATATAGACGCCAATGCCATATCCCAGACATGGTCTTACATGGGATC
ACATATCGATGCCA
Found at i:62857803 original size:44 final size:44
Alignment explanation
Indices: 62857662--62857803 Score: 105
Period size: 42 Copynumber: 3.1 Consensus size: 44
62857652 TTTTGTCCAA
62857662 AAAATTATCCAATGGTCTAATTACCATTTAAGGACCTCCAATTT
1 AAAATTATCCAATGGTCTAATTACCATTTAAGGACCTCCAATTT
* * * * * * *
62857706 AAAATTTCATAACAATTTTGGAC-ACCTCTATC-TTTTAGAACTCNCCAA---
1 AAAA-TT-AT-CCAA---TGGTCTA-AT-TACCATTTAAGGAC-CTCCAATTT
62857754 AAAATTATCCAATGGTCTAATTACCATTTAAGGACCTCCAATTT
1 AAAATTATCCAATGGTCTAATTACCATTTAAGGACCTCCAATTT
62857798 AAAATT
1 AAAATT
62857804 TCATAACAAT
Statistics
Matches: 70, Mismatches: 14, Indels: 28
0.62 0.12 0.25
Matches are distributed among these distances:
41 8 0.11
42 12 0.17
43 1 0.01
44 10 0.14
45 5 0.07
46 4 0.06
47 5 0.07
48 4 0.06
49 1 0.01
50 12 0.17
51 8 0.11
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.34
Consensus pattern (44 bp):
AAAATTATCCAATGGTCTAATTACCATTTAAGGACCTCCAATTT
Found at i:62857815 original size:92 final size:91
Alignment explanation
Indices: 62857658--62857840 Score: 357
Period size: 92 Copynumber: 2.0 Consensus size: 91
62857648 CCACTTTTGT
62857658 CCAAAAAATTATCCAATGGTCTAATTACCATTTAAGGACCTCCAATTTAAAATTTCATAACAATT
1 CCAAAAAATTATCCAATGGTCTAATTACCATTTAAGGACCTCCAATTTAAAATTTCATAACAATT
62857723 TTGGACACCTCTATCTTTTAGAACTC
66 TTGGACACCTCTATCTTTTAGAACTC
62857749 NCCAAAAAATTATCCAATGGTCTAATTACCATTTAAGGACCTCCAATTTAAAATTTCATAACAAT
1 -CCAAAAAATTATCCAATGGTCTAATTACCATTTAAGGACCTCCAATTTAAAATTTCATAACAAT
62857814 TTTGGACACCTCTATCTTTTAGAACTC
65 TTTGGACACCTCTATCTTTTAGAACTC
62857841 AAGTTTTGCA
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 91 1.00
ACGTcount: A:0.36, C:0.22, G:0.08, T:0.34
Consensus pattern (91 bp):
CCAAAAAATTATCCAATGGTCTAATTACCATTTAAGGACCTCCAATTTAAAATTTCATAACAATT
TTGGACACCTCTATCTTTTAGAACTC
Found at i:62858123 original size:2 final size:2
Alignment explanation
Indices: 62858116--62858161 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
62858106 TCATTACCAT
62858116 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
62858158 CA CA
1 CA CA
62858162 TACATTCTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:62858507 original size:81 final size:81
Alignment explanation
Indices: 62858384--62858547 Score: 310
Period size: 81 Copynumber: 2.0 Consensus size: 81
62858374 GAAACAATCA
*
62858384 TACAGATTTTTTCAAATGATCAACATTCAAACAATATCATCCATTTCAGGGATAGAGGTAGGCGC
1 TACAGATTTTTTCAAATGATCAACATTCAAACAATATCATCCATTTCAGGGATAGAGGTAGGCCC
62858449 GATATGAAATCTATAG
66 GATATGAAATCTATAG
*
62858465 TACAGATTTTTTCAAATGATCAACATTCAAACAATATCATCCATTTCAGGGATAGAGGTAGTCCC
1 TACAGATTTTTTCAAATGATCAACATTCAAACAATATCATCCATTTCAGGGATAGAGGTAGGCCC
62858530 GATATGAAATCTATAG
66 GATATGAAATCTATAG
62858546 TA
1 TA
62858548 ACTCTATCTC
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.30
Consensus pattern (81 bp):
TACAGATTTTTTCAAATGATCAACATTCAAACAATATCATCCATTTCAGGGATAGAGGTAGGCCC
GATATGAAATCTATAG
Found at i:62861329 original size:27 final size:27
Alignment explanation
Indices: 62861297--62861475 Score: 207
Period size: 27 Copynumber: 6.6 Consensus size: 27
62861287 TTAAATTGTA
62861297 TAGCACTAAGTGTGCGATTTGACTATG
1 TAGCACTAAGTGTGCGATTTGACTATG
* ** *
62861324 TTGCACTAAGTGTGCGAAATGAATATG
1 TAGCACTAAGTGTGCGATTTGACTATG
* *
62861351 -ATGCACTAAGTGTGCGAATTGACCATG
1 TA-GCACTAAGTGTGCGATTTGACTATG
**
62861378 CGGCACTAAGTGTGCGAGTTTGACTATG
1 TAGCACTAAGTGTGCGA-TTTGACTATG
* *
62861406 TAGCACTAAGTGTGCGATTTGATTACG
1 TAGCACTAAGTGTGCGATTTGACTATG
* * *
62861433 TAGCACTAAGTGTGCGAGTTGATTATA
1 TAGCACTAAGTGTGCGATTTGACTATG
*
62861460 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
62861476 GACTCAATAT
Statistics
Matches: 130, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 107 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGATTTGACTATG
Found at i:62861412 original size:82 final size:81
Alignment explanation
Indices: 62861299--62861454 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
62861289 AAATTGTATA
* *
62861299 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
62861363 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
62861380 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
62861445 TGCGAGTTGA
65 TGCGAATTGA
62861455 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:62861466 original size:82 final size:81
Alignment explanation
Indices: 62861295--62861475 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
62861285 GATTAAATTG
* *
62861295 TATAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TATAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
62861360 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
*** ** *
62861376 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TATAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
62861440 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
*
62861458 TATAGCACTGAGTGTGCG
1 TATAGCACTAAGTGTGCG
62861476 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 17 0.20
82 66 0.80
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TATAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:62862422 original size:319 final size:320
Alignment explanation
Indices: 62861817--62862456 Score: 1228
Period size: 319 Copynumber: 2.0 Consensus size: 320
62861807 ACTATGGTAT
*
62861817 GGTTCGGAATGGATGGAGTAATTAGCCTCGTTCCATTTTGTTTTCTCTTGTGATAATGTTATTGA
1 GGTTCGGAATGGATGGAGTAATTAGCCTCGTTCCATTTTGTTTCCTCTTGTGATAATGTTATTGA
62861882 TGGATGGTAGTGCATAGCTTATGACTTACTGAGTTATAAACTCACTCGGTGTTTCCTTGTCACCC
66 TGGATGGTAGTGCATAGCTTATGACTTACTGAGTTATAAACTCACTCGGTGTTTCCTTGTCACCC
62861947 ATTATAGGTTGCTTGGACTCATCTATTTTTGCGGGGTCAGGCCGTCATCGAAGTCATCACACCGG
131 ATTATAGGTTGCTTGGACTCATCTATTTTTGCGGGGTCAGGCCGTCATCGAAGTCATCACACCGG
62862012 ATAGCAAGTTTTGGTACTTTCTTCTTAGTTGGCTTAGAAGAACATTTTGGCATGTATAAGCTATT
196 ATAGCAAGTTTTGGTACTTTCTTCTTAGTTGGCTTAGAAGAACATTTTGGCATGTATAAGCTATT
62862077 ACGTTGTGTTTGAACTTTGGCATGTAAACTTTAAGCCATGCGAAAATGGCACGAATGTTC
261 ACGTTGTGTTTGAACTTTGGCATGTAAACTTTAAGCCATGCGAAAATGGCACGAATGTTC
* *
62862137 GGTTCGGTATGGATGGAGTAATT-GTCTCGTTCCATTTTGTTTCCTCTTGTGATAATGTTATTGA
1 GGTTCGGAATGGATGGAGTAATTAGCCTCGTTCCATTTTGTTTCCTCTTGTGATAATGTTATTGA
*
62862201 TGGATGGTAGTGCATTGCTTATGACTTACTGAGTTATAAACTCACTCGGTGTTTCCTTGTCACCC
66 TGGATGGTAGTGCATAGCTTATGACTTACTGAGTTATAAACTCACTCGGTGTTTCCTTGTCACCC
62862266 ATTATAGGTTGCTTGGACTCATCTATTTTTGCGGGGTCAGGCCGTCATCGAAGTCATCACACCGG
131 ATTATAGGTTGCTTGGACTCATCTATTTTTGCGGGGTCAGGCCGTCATCGAAGTCATCACACCGG
62862331 ATAGCAAGTTTTGGTACTTTCTTCTTAGTTGGCTTAGAAGAACATTTTGGCATGTATAAGCTATT
196 ATAGCAAGTTTTGGTACTTTCTTCTTAGTTGGCTTAGAAGAACATTTTGGCATGTATAAGCTATT
*
62862396 ACGTTGTGTTTGAACTTTGGCATGTAAACTTTAAGCCATGCGAAGATGGCACGAATGTTC
261 ACGTTGTGTTTGAACTTTGGCATGTAAACTTTAAGCCATGCGAAAATGGCACGAATGTTC
62862456 G
1 G
62862457 ATTGAGTTGG
Statistics
Matches: 315, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
319 293 0.93
320 22 0.07
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (320 bp):
GGTTCGGAATGGATGGAGTAATTAGCCTCGTTCCATTTTGTTTCCTCTTGTGATAATGTTATTGA
TGGATGGTAGTGCATAGCTTATGACTTACTGAGTTATAAACTCACTCGGTGTTTCCTTGTCACCC
ATTATAGGTTGCTTGGACTCATCTATTTTTGCGGGGTCAGGCCGTCATCGAAGTCATCACACCGG
ATAGCAAGTTTTGGTACTTTCTTCTTAGTTGGCTTAGAAGAACATTTTGGCATGTATAAGCTATT
ACGTTGTGTTTGAACTTTGGCATGTAAACTTTAAGCCATGCGAAAATGGCACGAATGTTC
Found at i:62864497 original size:13 final size:13
Alignment explanation
Indices: 62864479--62864506 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
62864469 CTGCCTAATG
62864479 GACACGCCCGTGT
1 GACACGCCCGTGT
62864492 GACACGCCCGTGT
1 GACACGCCCGTGT
62864505 GA
1 GA
62864507 GGAAGTACAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.18, C:0.36, G:0.32, T:0.14
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:62873519 original size:46 final size:46
Alignment explanation
Indices: 62873469--62873644 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
62873459 TGGTTGAGCA
62873469 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
62873515 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
62873560 CATCCGAACTAGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
62873608 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62873645 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.58
47 28 0.27
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:62873625 original size:93 final size:93
Alignment explanation
Indices: 62873466--62873636 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
62873456 GGATGGTTGA
* * * *
62873466 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTAGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
62873531 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
62873559 GCATCCGAACTAGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTAGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
*
62873624 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
62873637 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTAGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:62881875 original size:16 final size:16
Alignment explanation
Indices: 62881854--62881885 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
62881844 CGATAAATCT
62881854 CGAAATGCCGAAAAGC
1 CGAAATGCCGAAAAGC
*
62881870 CGAAATGCCGATAAGC
1 CGAAATGCCGAAAAGC
62881886 TAAAATTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.25, G:0.25, T:0.09
Consensus pattern (16 bp):
CGAAATGCCGAAAAGC
Found at i:62882172 original size:29 final size:29
Alignment explanation
Indices: 62882102--62882190 Score: 96
Period size: 29 Copynumber: 3.1 Consensus size: 29
62882092 AAAGCACGAC
*
62882102 TATGAATGTGATTTGGGCCTAATGGGCC-
1 TATGAAAGTGATTTGGGCCTAATGGGCCA
62882130 -ATGCAAATGTGATTTGGGCCTAATGGGCCA
1 TATG-AAA-GTGATTTGGGCCTAATGGGCCA
* **
62882160 TATGAAAGAGA-TTGGG-CTAGCGGGCCA
1 TATGAAAGTGATTTGGGCCTAATGGGCCA
62882187 TATG
1 TATG
62882191 CATGTATGTA
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
27 16 0.30
28 7 0.13
29 24 0.45
30 3 0.06
31 3 0.06
ACGTcount: A:0.26, C:0.15, G:0.33, T:0.27
Consensus pattern (29 bp):
TATGAAAGTGATTTGGGCCTAATGGGCCA
Found at i:62884185 original size:47 final size:47
Alignment explanation
Indices: 62884115--62884275 Score: 250
Period size: 47 Copynumber: 3.4 Consensus size: 47
62884105 CCCTTAGGGA
*
62884115 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
* * * *
62884162 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
* *
62884209 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
*
62884256 CTTGTCACATATATACACTT
1 CTTATCACATATATACACTT
62884276 CTATTTAGGG
Statistics
Matches: 101, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 101 1.00
ACGTcount: A:0.27, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
Found at i:62884519 original size:46 final size:46
Alignment explanation
Indices: 62884452--62888917 Score: 8360
Period size: 46 Copynumber: 96.9 Consensus size: 46
62884442 ATTCCTTACC
62884452 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62884498 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62884544 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62884590 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62884636 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62884682 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62884728 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62884774 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62884820 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62884866 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62884912 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62884958 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62885004 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62885050 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62885096 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62885142 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62885188 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62885234 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62885280 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62885326 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62885372 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62885418 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62885464 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62885510 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
* * *
62885556 TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT
1 TTCACATTCATCACATTGGCCATT-GGCCTTATTACATATATCCAGT
62885603 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62885649 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62885695 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62885741 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62885787 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62885833 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62885879 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62885925 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62885971 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62886017 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62886063 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62886109 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62886155 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62886201 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62886247 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62886293 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62886339 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62886385 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62886431 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62886477 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62886523 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62886569 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62886615 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62886661 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
* * *
62886707 TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT
1 TTCACATTCATCACATTGGCCATT-GGCCTTATTACATATATCCAGT
62886754 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62886800 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62886846 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62886892 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62886938 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62886984 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62887030 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62887076 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62887122 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62887168 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62887214 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62887260 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62887306 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62887352 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62887398 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62887444 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62887490 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62887536 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62887582 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62887628 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62887674 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62887720 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62887766 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
62887812 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
* * *
62887858 TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT
1 TTCACATTCATCACATTGGCCATT-GGCCTTATTACATATATCCAGT
* * * *
62887905 TTCACATTCATCACATTGGCCATTAGGCCTTGTCACATATATACACT
1 TTCACATTCATCACATTGGCCATT-GGCCTTATTACATATATCCAGT
* * * *
62887952 TTCACATTCATCACATTGGCCATTAGGCCTTGTCACATATATACACT
1 TTCACATTCATCACATTGGCCATT-GGCCTTATTACATATATCCAGT
* * * *
62887999 TTCACATTCATCACATTGGCCATTAGGCCTTGTCACATATATACACT
1 TTCACATTCATCACATTGGCCATT-GGCCTTATTACATATATCCAGT
*
62888046 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATACAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
*
62888092 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATACAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
*
62888138 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATACAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
*
62888184 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATACAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
*
62888230 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATACAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
*
62888276 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATACAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
*
62888322 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATACAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
*
62888368 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATACAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
*
62888414 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATACAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
*
62888460 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATACAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
*
62888506 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATACAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
*
62888552 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATACAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
* * *
62888598 TTCACATTCATCACATTGGCC-TTCGGCCTTATCACATATATACACT
1 TTCACATTCATCACATTGGCCATT-GGCCTTATTACATATATCCAGT
* *
62888644 TTCACATTCATCACATTGGCCATTAGGCCTT-TTCACATATATACACT
1 TTCACATTCATCACATTGGCCATT-GGCCTTATT-ACATATATCCAGT
* * * *
62888691 TTCACATTCATCACATTGGCCATTAGGCCTTGTCACATATATACACT
1 TTCACATTCATCACATTGGCCATT-GGCCTTATTACATATATCCAGT
* * *
62888738 TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT
1 TTCACATTCATCACATTGGCCATT-GGCCTTATTACATATATCCAGT
*
62888785 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATACAGT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
* * *
62888831 TTCACATTCATCACATTGGCCATTGGCCTTATCACATATATACACT
1 TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
*
62888877 TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
1 TTCACATTCATCACATTGGCCATT-GGCCTTATTACATATA
62888918 CATATCTTGT
Statistics
Matches: 4381, Mismatches: 31, Indels: 15
0.99 0.01 0.00
Matches are distributed among these distances:
45 2 0.00
46 3960 0.90
47 418 0.10
48 1 0.00
ACGTcount: A:0.27, C:0.26, G:0.11, T:0.37
Consensus pattern (46 bp):
TTCACATTCATCACATTGGCCATTGGCCTTATTACATATATCCAGT
Found at i:62898399 original size:16 final size:16
Alignment explanation
Indices: 62898374--62898410 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
62898364 GACAAATCCC
62898374 GAAATACCAAAAAGCT
1 GAAATACCAAAAAGCT
*
62898390 GAAATGCCAAAAAGCT
1 GAAATACCAAAAAGCT
*
62898406 AAAAT
1 GAAAT
62898411 TTTGGCTACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.57, C:0.16, G:0.14, T:0.14
Consensus pattern (16 bp):
GAAATACCAAAAAGCT
Found at i:62898667 original size:29 final size:29
Alignment explanation
Indices: 62898625--62898704 Score: 117
Period size: 29 Copynumber: 2.8 Consensus size: 29
62898615 CATGACTATA
62898625 AATGTGATTTGGGCCTAATGGGCCATACG
1 AATGTGATTTGGGCCTAATGGGCCATACG
* *
62898654 AATGTTATTTGGGCCTAATGGGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATACG
* *
62898683 AATGAGA-TTGGGCCTAGTGGGC
1 AATGTGATTTGGGCCTAATGGGC
62898705 ATATGCATGT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 14 0.30
29 32 0.70
ACGTcount: A:0.24, C:0.15, G:0.33, T:0.29
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATACG
Found at i:62909355 original size:25 final size:24
Alignment explanation
Indices: 62909312--62909368 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
62909302 TAGTATCATA
*
62909312 CGAGCTGTAAACAGCAAGCTCC-T
1 CGAGCTGAAAACAGCAAGCTCCTT
*
62909335 CTGAGCTGAATAACAGTAAGCTCCTT
1 C-GAGCTGAA-AACAGCAAGCTCCTT
62909361 CGAGCTGA
1 CGAGCTGA
62909369 GTATCGATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 1 0.03
24 7 0.24
25 19 0.66
26 2 0.07
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.21
Consensus pattern (24 bp):
CGAGCTGAAAACAGCAAGCTCCTT
Found at i:62909379 original size:25 final size:25
Alignment explanation
Indices: 62909362--62909418 Score: 114
Period size: 25 Copynumber: 2.3 Consensus size: 25
62909352 AAGCTCCTTC
62909362 GAGCTGAGTATCGATAAGCTCATAT
1 GAGCTGAGTATCGATAAGCTCATAT
62909387 GAGCTGAGTATCGATAAGCTCATAT
1 GAGCTGAGTATCGATAAGCTCATAT
62909412 GAGCTGA
1 GAGCTGA
62909419 AATTGGTAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (25 bp):
GAGCTGAGTATCGATAAGCTCATAT
Found at i:62912472 original size:27 final size:27
Alignment explanation
Indices: 62912442--62912573 Score: 201
Period size: 27 Copynumber: 4.9 Consensus size: 27
62912432 ATTACCAAAG
* * **
62912442 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTATTT
62912469 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
*
62912496 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
*
62912523 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
*
62912550 TACCCTCGATTTACAAAATTACTA
1 TACCCTCGATTTACAGAATTACTA
62912574 AAATACCCTT
Statistics
Matches: 96, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:62912572 original size:54 final size:54
Alignment explanation
Indices: 62912442--62912598 Score: 206
Period size: 54 Copynumber: 2.9 Consensus size: 54
62912432 ATTACCAAAG
* * ** *
62912442 TACCCCCGATTTACATAATTACCGTTTTACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTTGATTTACAGAATTACTATTT
* *
62912496 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTTGATTTACAGAATTACTATTT
*** * *
62912550 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTAC
1 TACCCTCGATTTACAAAATTACTATTTTACCCTTGATTTACAGAATTAC
62912599 CAAAATACCC
Statistics
Matches: 90, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTATTTTACCCTTGATTTACAGAATTACTATTT
Found at i:62912580 original size:27 final size:27
Alignment explanation
Indices: 62912415--62912609 Score: 147
Period size: 27 Copynumber: 7.2 Consensus size: 27
62912405 ATTATTGAAA
* ** * *
62912415 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTACAAAATTACTAAAT
* * ****
62912442 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTAAAT
* **
62912469 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAT
* * **
62912496 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAT
* * **
62912523 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAT
*
62912550 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAT
* * * *
62912577 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAT
62912604 TACCCT
1 TACCCT
62912610 AGTCTGTAAA
Statistics
Matches: 144, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.33, C:0.24, G:0.07, T:0.36
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAT
Found at i:62912608 original size:54 final size:53
Alignment explanation
Indices: 62912496--62912711 Score: 159
Period size: 54 Copynumber: 4.0 Consensus size: 53
62912486 ATTACTATTT
* *** * * * ***
62912496 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTAAAATACCC-TGGTTTACAAAATTACCAAAA
*
62912550 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAATACCC-TGGTTTACAAAATTACCAAAA
* * * * **
62912604 TACCCTAG-TCTGTAAAATTGCT-AAATATCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAATA-CCCTGGTTTACAAAATTACCAAAA
* ** * **
62912656 TACCC-CTAGTTGGTAAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACTAAAATACC-CTGGTTTACAAAATTACCAAAA
62912710 TA
1 TA
62912712 GCCTTGCAGG
Statistics
Matches: 133, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
52 29 0.22
53 25 0.19
54 79 0.59
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.34
Consensus pattern (53 bp):
TACCCTCGATTTATAAAATTACTAAAATACCCTGGTTTACAAAATTACCAAAA
Found at i:62912608 original size:81 final size:81
Alignment explanation
Indices: 62912412--62912609 Score: 207
Period size: 81 Copynumber: 2.4 Consensus size: 81
62912402 CCAATTATTG
* ** * * * *
62912412 AAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTACATAATTACCGTTTTACCCTCG
1 AAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCG
*
62912477 ATTTACAGAATTACTA
66 ATTTACAAAATTACTA
*** * * * *** * *
62912493 TTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTATTTTACCCTCG
1 AAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCG
62912558 ATTTACAAAATTACTA
66 ATTTACAAAATTACTA
* *
62912574 AAATACCCTTGGTTTACAAAATTACCAAAATACCCT
1 AAATACCCTCGATTTACAAAATTACCAAAATACCCT
62912610 AGTCTGTAAA
Statistics
Matches: 90, Mismatches: 27, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
81 90 1.00
ACGTcount: A:0.34, C:0.23, G:0.07, T:0.35
Consensus pattern (81 bp):
AAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCG
ATTTACAAAATTACTA
Found at i:62912662 original size:27 final size:27
Alignment explanation
Indices: 62912564--62912711 Score: 174
Period size: 27 Copynumber: 5.6 Consensus size: 27
62912554 CTCGATTTAC
* * **
62912564 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGGTTTGT
* *
62912591 AAAATTACCAAAATA-CCCTAGTCTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * *
62912617 AAAATT-GCTAAATATCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* *
62912643 AAAATTACCAAAATACCCCTAGTTGGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
62912670 AAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
62912697 AAAATTACCAAAATA
1 AAAATTACCAAAATA
62912712 GCCTTGCAGG
Statistics
Matches: 101, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
25 6 0.06
26 27 0.27
27 68 0.67
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTGT
Found at i:62912729 original size:27 final size:27
Alignment explanation
Indices: 62912719--62913108 Score: 514
Period size: 27 Copynumber: 14.5 Consensus size: 27
62912709 ATAGCCTTGC
62912719 AGGGTAGAATTACCGGAATACCCCTGT
1 AGGGTAGAATTACCGGAATACCCCTGT
62912746 AGGGTAGAATTA-CGGAATACCCCTGT
1 AGGGTAGAATTACCGGAATACCCCTGT
* *
62912772 AAGGTAGAATTACCGGAATACCCCTAT
1 AGGGTAGAATTACCGGAATACCCCTGT
* *
62912799 AAGGTAGAATTACCGAAATACCCCTGT
1 AGGGTAGAATTACCGGAATACCCCTGT
* *
62912826 AGAGTAGAATTACCAGAATACCCCTGT
1 AGGGTAGAATTACCGGAATACCCCTGT
62912853 AGGGTAGAATTACCGGAATACCCCTGT
1 AGGGTAGAATTACCGGAATACCCCTGT
*
62912880 AGGGTAGAATTACCGAAATACCCCTGT
1 AGGGTAGAATTACCGGAATACCCCTGT
* *
62912907 AGGGTAGAATTATCGAAATACCCCTGT
1 AGGGTAGAATTACCGGAATACCCCTGT
* *
62912934 AGGGTAGAATTACCAGAATACCCCTAT
1 AGGGTAGAATTACCGGAATACCCCTGT
* * **
62912961 AGGGTAAAATTACCAGAATACAACTGT
1 AGGGTAGAATTACCGGAATACCCCTGT
62912988 AGGGTAGAATTACCGGAATACCCCTGT
1 AGGGTAGAATTACCGGAATACCCCTGT
***
62913015 AGGGTAGAATTACTAAAATACCCCTGT
1 AGGGTAGAATTACCGGAATACCCCTGT
***
62913042 AGGGTAGAATTACTAAAATACCCCTGT
1 AGGGTAGAATTACCGGAATACCCCTGT
* * * * *
62913069 AGAGTGGAATTATCGGGATA-CCTTGT
1 AGGGTAGAATTACCGGAATACCCCTGT
* *
62913095 GGGGTAAAATTACC
1 AGGGTAGAATTACC
62913109 ATTTTGCCCC
Statistics
Matches: 322, Mismatches: 40, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
26 39 0.12
27 283 0.88
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
AGGGTAGAATTACCGGAATACCCCTGT
Found at i:62912757 original size:81 final size:81
Alignment explanation
Indices: 62912645--62913109 Score: 524
Period size: 81 Copynumber: 5.8 Consensus size: 81
62912635 TGGTTTGTAA
* * ** * ** * *
62912645 AATTACCAAAATACCCCTAGT-TGGTAAAATTACCAAAATACCACTGGT-TTGTAAAATTACCAA
1 AATTACCAAAATACCCCT-GTAGGGTAGAATTACCGGAATACCCCT-GTAGGGTAGAATTACCAG
* * *
62912708 AATAGCCTTGCAGGGTAG
64 AATACCCCTGTAGGGTAG
** * *
62912726 AATTACCGGAATACCCCTGTAGGGTAGAATTA-CGGAATACCCCTGTAAGGTAGAATTACCGGAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACCAGAA
* *
62912790 TACCCCTATAAGGTAG
66 TACCCCTGTAGGGTAG
* * * *
62912806 AATTACCGAAATACCCCTGTAGAGTAGAATTACCAGAATACCCCTGTAGGGTAGAATTACCGGAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACCAGAA
62912871 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * *
62912887 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTACCAGAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACCAGAA
* *
62912952 TACCCCTATAGGGTAA
66 TACCCCTGTAGGGTAG
* ** * *
62912968 AATTACCAGAATACAACTGTAGGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACTAAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACCAGAA
62913033 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * * * * * *
62913049 AATTACTAAAATACCCCTGTAGAGTGGAATTATCGGGATA-CCTTGTGGGGTAAAATTACCA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACCA
62913110 TTTTGCCCCT
Statistics
Matches: 329, Mismatches: 52, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
79 2 0.01
80 81 0.25
81 246 0.75
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.24
Consensus pattern (81 bp):
AATTACCAAAATACCCCTGTAGGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACCAGAA
TACCCCTGTAGGGTAG
Found at i:62913587 original size:22 final size:22
Alignment explanation
Indices: 62913535--62913599 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
62913525 TTAAGGCCTT
* *
62913535 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
62913557 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
62913579 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
62913600 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:62913807 original size:28 final size:27
Alignment explanation
Indices: 62913765--62913859 Score: 104
Period size: 27 Copynumber: 3.5 Consensus size: 27
62913755 TAAGTCGCTT
* *
62913765 TGCCACATTATCTGTTTCTGGTGGTTA
1 TGCCACAATATCTGTTTCTGGTGGCTA
*
62913792 TGCCACAAATATCTG-TTCTGGTGGCTC
1 TGCCAC-AATATCTGTTTCTGGTGGCTA
* *
62913819 TGCCACAATATCTGTATT-TGGTGACTC
1 TGCCACAATATCTGT-TTCTGGTGGCTA
*
62913846 TGTCACAATATCTG
1 TGCCACAATATCTG
62913860 ATAACTGAGC
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
26 8 0.13
27 43 0.72
28 9 0.15
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (27 bp):
TGCCACAATATCTGTTTCTGGTGGCTA
Found at i:62914034 original size:6 final size:6
Alignment explanation
Indices: 62913996--62914137 Score: 67
Period size: 6 Copynumber: 22.8 Consensus size: 6
62913986 TTGCATTCAC
* * *
62913996 ATTCTG ATTTTTG ATTCTG -TTACCTG ATGCTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * * *
62914046 -TTACCTA ATACTG ATTCTG ATTTTG ATTCTG -TTACCTG ATACTA ATTTTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * *
62914096 ATTCTG ATTCT- ATCACCTA ATTCTG ATTCTA ATTCTG ATTCT
1 ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCT
62914138 AGTTCTAATA
Statistics
Matches: 100, Mismatches: 23, Indels: 26
0.67 0.15 0.17
Matches are distributed among these distances:
5 8 0.08
6 72 0.72
7 15 0.15
8 5 0.05
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:62914042 original size:31 final size:31
Alignment explanation
Indices: 62913996--62914137 Score: 176
Period size: 31 Copynumber: 4.5 Consensus size: 31
62913986 TTGCATTCAC
* *
62913996 ATTCTGATTTTTGATTCTGTTACCTGATGCTG
1 ATTCTGA-TTTTGATTCTGTTACCTAATACTG
62914028 ATTCTGATTTTGATTCTGTTACCTAATACTG
1 ATTCTGATTTTGATTCTGTTACCTAATACTG
* *
62914059 ATTCTGATTTTGATTCTGTTACCTGATACTA
1 ATTCTGATTTTGATTCTGTTACCTAATACTG
* * * * *
62914090 ATTTTGATTCTGATTCTATCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTAATACTG
* *
62914121 ATTCTAATTCTGATTCT
1 ATTCTGATTTTGATTCT
62914138 AGTTCTAATA
Statistics
Matches: 97, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
31 90 0.93
32 7 0.07
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTAATACTG
Found at i:62914098 original size:62 final size:62
Alignment explanation
Indices: 62913996--62914137 Score: 194
Period size: 62 Copynumber: 2.3 Consensus size: 62
62913986 TTGCATTCAC
* * * * *
62913996 ATTCTGATTTTTGATTCTGTTACCTGATGCTGATTCTGATTTTGATTCTGTTACCTAATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTAATTCTGATTCTGATTCTATCACCTAATACTG
* *
62914059 ATTCTGATTTTGATTCTGTTACCTGATACTAATTTTGATTCTGATTCTATCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTAATTCTGATTCTGATTCTATCACCTAATACTG
* *
62914121 ATTCTAATTCTGATTCT
1 ATTCTGATTTTGATTCT
62914138 AGTTCTAATA
Statistics
Matches: 70, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
62 63 0.90
63 7 0.10
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (62 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTAATTCTGATTCTGATTCTATCACCTAATACTG
Found at i:62922424 original size:40 final size:40
Alignment explanation
Indices: 62922369--62922572 Score: 241
Period size: 40 Copynumber: 5.1 Consensus size: 40
62922359 CGGATGATAA
* * *
62922369 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
62922409 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
62922449 CTGGGCTATGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
62922489 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAATTACCATAA
1 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
62922529 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTA-CTATAT
62922569 CCGG
1 CCGG
62922573 TTAAATTCCG
Statistics
Matches: 139, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:62922498 original size:80 final size:80
Alignment explanation
Indices: 62922365--62922572 Score: 312
Period size: 80 Copynumber: 2.6 Consensus size: 80
62922355 TATTCGGATG
* * * *
62922365 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGCCCCGAAGGC
1 ATAACCGGGCTATGTCCCGAAGGCATTCGTGCGAGTTACTATA-TCCGGGCTAAGCCCCGAAGGC
* *
62922429 ATTTGTGCGAGTTACT
65 ATTTGTGCGAATTACC
*
62922445 ATAACTGGGCTATGTCCCGAAGGCATTCGTGCGAGTTACTATATCCGGGCTAAGCCCCGAAGGCA
1 ATAACCGGGCTATGTCCCGAAGGCATTCGTGCGAGTTACTATATCCGGGCTAAGCCCCGAAGGCA
62922510 TTTGTGCGAATTACC
66 TTTGTGCGAATTACC
*
62922525 ATAACCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCCGG
1 ATAACCGGGCTATGTCCCGAAGGCATTCGTGCGAGTTA-CTATATCCGG
62922573 TTAAATTCCG
Statistics
Matches: 117, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
79 2 0.02
80 114 0.97
81 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (80 bp):
ATAACCGGGCTATGTCCCGAAGGCATTCGTGCGAGTTACTATATCCGGGCTAAGCCCCGAAGGCA
TTTGTGCGAATTACC
Found at i:62925893 original size:47 final size:47
Alignment explanation
Indices: 62925833--62926001 Score: 275
Period size: 47 Copynumber: 3.6 Consensus size: 47
62925823 GCATTGGCAC
* *
62925833 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCGTTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
62925880 TAAGACAAGGATACCATGTAAGACCATGTTTCGAACATGGAATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
62925927 TAAAACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
62925974 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
62926002 CCAAGGAATG
Statistics
Matches: 112, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 112 1.00
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:62926053 original size:55 final size:53
Alignment explanation
Indices: 62925980--62926109 Score: 172
Period size: 55 Copynumber: 2.4 Consensus size: 53
62925970 TTGGTAAGAT
*
62925980 AAGGATATCATGTAAGACCATGCCAAGGAATGGCATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGGAATGGCATTGATGAGTT-C-ATAAGG-A
* * * *
62926036 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGAATGGCATTGATGAGTTCATAAGGA
*
62926088 AAGGATACCACGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
62926110 TTAAGACATG
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
52 4 0.06
53 21 0.32
54 1 0.02
55 36 0.55
56 4 0.06
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGGAATGGCATTGATGAGTTCATAAGGA
Found at i:62926108 original size:53 final size:54
Alignment explanation
Indices: 62925980--62926146 Score: 185
Period size: 53 Copynumber: 3.1 Consensus size: 54
62925970 TTGGTAAGAT
* * *
62925980 AAGGATATCATGTAAGACCATGCCAAGGAATGGCATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTT-C-ATAAGGAA
* *
62926036 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGG-C
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGAA
* ** * * * *
62926088 AAGGATACCACGTAAGACCATGTTAAGACATGGCAATGGTAAGTTCAAAAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGAA
62926143 AAGG
1 AAGG
62926147 TTCCCGAGTA
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
52 4 0.04
53 40 0.43
54 6 0.06
55 40 0.43
56 4 0.04
ACGTcount: A:0.38, C:0.16, G:0.26, T:0.20
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGAA
Found at i:62928672 original size:13 final size:13
Alignment explanation
Indices: 62928654--62928683 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
62928644 GGCATGGGCA
*
62928654 TGTGCCCTGGCCG
1 TGTGCCCTGACCG
62928667 TGTGCCCTGACCG
1 TGTGCCCTGACCG
62928680 TGTG
1 TGTG
62928684 AATTCTATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.03, C:0.33, G:0.37, T:0.27
Consensus pattern (13 bp):
TGTGCCCTGACCG
Found at i:62931939 original size:17 final size:18
Alignment explanation
Indices: 62931917--62931950 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
62931907 CACATTGAAG
62931917 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
62931934 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
62931951 CTTCCTTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:62934177 original size:27 final size:26
Alignment explanation
Indices: 62934072--62934195 Score: 171
Period size: 26 Copynumber: 4.8 Consensus size: 26
62934062 CCTCATTAAT
**
62934072 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
62934097 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* * * *
62934122 AATTAGGCCATAAACCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
62934148 AACTGGGGCATAAGCCCTTTTTCAATA
1 AACTGGGGCATAAGCCC-TTTTCAATA
62934175 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
62934196 GCACTTCCTC
Statistics
Matches: 87, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
25 30 0.34
26 31 0.36
27 26 0.30
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:62934267 original size:9 final size:9
Alignment explanation
Indices: 62934253--62934278 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
62934243 ACATCATGTG
62934253 CATATCATA
1 CATATCATA
62934262 CATATCATA
1 CATATCATA
62934271 CATATCAT
1 CATATCAT
62934279 GTGCATATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:62934274 original size:4 final size:5
Alignment explanation
Indices: 62934253--62934298 Score: 53
Period size: 5 Copynumber: 9.6 Consensus size: 5
62934243 ACATCATGTG
*
62934253 CATAT CATA- CATAT CATA- CATAT CATGT GCATAT CATAT CA-AT CAT
1 CATAT CATAT CATAT CATAT CATAT CATAT -CATAT CATAT CATAT CAT
62934299 GTATATCAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
4 12 0.34
5 19 0.54
6 4 0.11
ACGTcount: A:0.39, C:0.22, G:0.04, T:0.35
Consensus pattern (5 bp):
CATAT
Found at i:62934285 original size:20 final size:20
Alignment explanation
Indices: 62934262--62934300 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
62934252 GCATATCATA
62934262 CATATCATA-CATATCATGTG
1 CATATCATATCA-ATCATGTG
62934282 CATATCATATCAATCATGT
1 CATATCATATCAATCATGT
62934301 ATATCAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.36
Consensus pattern (20 bp):
CATATCATATCAATCATGTG
Found at i:62939120 original size:37 final size:37
Alignment explanation
Indices: 62939070--62939185 Score: 187
Period size: 37 Copynumber: 3.1 Consensus size: 37
62939060 TTATTATGAA
* * * *
62939070 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
62939107 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
*
62939144 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGA
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
62939181 GTCTT
1 GTCTT
62939186 TAGAGCTCAG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 74 1.00
ACGTcount: A:0.27, C:0.33, G:0.18, T:0.22
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
Found at i:62939479 original size:49 final size:47
Alignment explanation
Indices: 62939304--62939577 Score: 388
Period size: 47 Copynumber: 5.7 Consensus size: 47
62939294 CTCTTCGGGA
* * * * * *
62939304 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
62939351 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62939398 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62939445 CTTATCACATGTATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
62939494 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
62939543 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
62939578 AGAATCCTAA
Statistics
Matches: 209, Mismatches: 15, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
46 1 0.00
47 115 0.55
49 93 0.44
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:62939498 original size:96 final size:94
Alignment explanation
Indices: 62939304--62939577 Score: 388
Period size: 96 Copynumber: 2.9 Consensus size: 94
62939294 CTCTTCGGGA
* * * * * * * *
62939304 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
62939369 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCAGCCATTAGGC
62939398 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA--TATATAC
62939463 ACTTTCACATTCATCACATCAGCCATTAGGC
64 ACTTTCACATTCATCACATCAGCCATTAGGC
* *
62939494 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
62939559 A-TGTTCACATCCATCACAT
64 ACT-TTCACATTCATCACAT
62939578 AGAATCCTAA
Statistics
Matches: 163, Mismatches: 12, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
94 48 0.29
95 1 0.01
96 68 0.42
98 46 0.28
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCAGCCATTAGGC
Found at i:62943892 original size:82 final size:82
Alignment explanation
Indices: 62943755--62943918 Score: 276
Period size: 82 Copynumber: 2.0 Consensus size: 82
62943745 TAATAGCTTA
* *
62943755 TACATGCCAAAATGTTCTTCTAAGCCAACTAAGAAGAAAGTACCAAAACTTGCTATCCGGTGTGA
1 TACATGCCAAAATGATCTTCTAAGCCAACTAAGAAGAAAGTACCAAAACTAGCTATCCGGTGTGA
62943820 TGACTTCGATGACGGCC
66 TGACTTCGATGACGGCC
*
62943837 TACATGCCAAAATGATCTTCTAAG-CACACTAAGAAGAAAGTACCAAAACTAGCTATCTGGTGTG
1 TACATGCCAAAATGATCTTCTAAGCCA-ACTAAGAAGAAAGTACCAAAACTAGCTATCCGGTGTG
*
62943901 ATGACTTCGTTGACGGCC
65 ATGACTTCGATGACGGCC
62943919 CGACCCCGCA
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
81 2 0.03
82 75 0.97
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.24
Consensus pattern (82 bp):
TACATGCCAAAATGATCTTCTAAGCCAACTAAGAAGAAAGTACCAAAACTAGCTATCCGGTGTGA
TGACTTCGATGACGGCC
Found at i:62944459 original size:27 final size:27
Alignment explanation
Indices: 62944429--62944824 Score: 438
Period size: 27 Copynumber: 14.6 Consensus size: 27
62944419 ATATTGAGTC
* * * *
62944429 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAATT
* * *
62944456 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAATT
*
62944483 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AATT
** *
62944511 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAATT
* *
62944538 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAATT
* *
62944565 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAATT
*
62944592 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AATT
** *
62944620 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAATT
* *
62944647 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAATT
* *
62944674 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAATT
*
62944701 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AATT
** *
62944729 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAATT
* *
62944756 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAATT
* *
62944783 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAATT
62944810 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62944825 GTACAATTTA
Statistics
Matches: 315, Mismatches: 45, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
27 243 0.77
28 72 0.23
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAATT
Done.