Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 185 of 235
Found at i:62944568 original size:82 final size:80
Alignment explanation
Indices: 62944429--62944824 Score: 425
Period size: 82 Copynumber: 4.8 Consensus size: 80
62944419 ATATTGAGTC
* * * * * *
62944429 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAG
1 CGCACACTTAGTGCAACATAGTCAACTCGCACACTTAGTGCT-CATAGTCAAATCGCACACTTAG
*
62944494 TGCTACATAGTCAAACT
65 TGCTACATAGTC-AATT
** * * * **
62944511 CGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAG
1 CGCACACTTAGTGCAACATAGTCAACTCGCACACTTAGTGC-TCATAGTCAAATCGCACACTTAG
* *
62944576 TGCAACATAGTCAAAT
65 TGCTACATAGTCAATT
* * * *
62944592 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTA
1 CGCACACTTAGTGCAACATAGTC-AACTCGCACACTTAGTG-CTCATAGTCAAATCGCACACTTA
* *
62944657 GTGC-ATCATATTCATTT
64 GTGCTA-CATAGTCAATT
*
62944674 CGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
1 CGCACACTTAGTGCAACATAGTCAACTCGCACACTTAGTGCT-CATAGTCAAA-TCGCACACTTA
** *
62944739 GTGCCGCATGGTCAATT
64 GTGCTACATAGTCAATT
* * ** *
62944756 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAG
1 CGCACACTTAGTGCAACATAGTCAACTCGCACACTTAGTGC-TCATAGTCAAATCGCACACTTAG
62944821 TGCT
65 TGCT
62944825 GTACAATTTA
Statistics
Matches: 267, Mismatches: 39, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
80 1 0.00
81 63 0.24
82 201 0.75
83 2 0.01
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (80 bp):
CGCACACTTAGTGCAACATAGTCAACTCGCACACTTAGTGCTCATAGTCAAATCGCACACTTAGT
GCTACATAGTCAATT
Found at i:62944620 original size:109 final size:109
Alignment explanation
Indices: 62944429--62944824 Score: 713
Period size: 109 Copynumber: 3.6 Consensus size: 109
62944419 ATATTGAGTC
* * ** * * *
62944429 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTA
1 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
62944493 GTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
65 GTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
62944538 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAG
1 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAG
62944603 TGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
66 TGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
62944647 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAG
1 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAG
62944712 TGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
66 TGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
62944756 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAG
1 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAG
62944821 TGCT
66 TGCT
62944825 GTACAATTTA
Statistics
Matches: 279, Mismatches: 7, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
108 2 0.01
109 277 0.99
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (109 bp):
CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAG
TGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
Found at i:62946456 original size:40 final size:40
Alignment explanation
Indices: 62946402--62946573 Score: 195
Period size: 40 Copynumber: 4.3 Consensus size: 40
62946392 GCTGTCACAG
* * *
62946402 ACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGG
1 ACCTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGA
62946442 ACCTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGA
1 ACCTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGA
* * * *
62946482 ACTTAGTCCGGATACATCACTAGCATGAATGCTCTTCGGA
1 ACCTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGA
* * * * *
62946522 ACTTAGTCCGGATATGGTCACTTAGCAC-AAAGC-CTTCGGG
1 ACCTAGCCCGGATAT-ATCAC-TAGCACGAATGCTCTTCGGA
*
62946562 ACTTAGCCCGGA
1 ACCTAGCCCGGA
62946574 CATCATTCAA
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
40 104 0.89
41 8 0.07
42 5 0.04
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
ACCTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGA
Found at i:62946924 original size:29 final size:29
Alignment explanation
Indices: 62946885--62946963 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
62946875 CTTAATAATC
*
62946885 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
62946915 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
62946944 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
62946964 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:62956803 original size:26 final size:26
Alignment explanation
Indices: 62956758--62956829 Score: 128
Period size: 26 Copynumber: 2.8 Consensus size: 26
62956748 CCTCTTTAAT
62956758 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
62956783 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
62956809 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
62956830 GCACTTCCTC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
25 10 0.22
26 35 0.78
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:62956904 original size:20 final size:20
Alignment explanation
Indices: 62956879--62956926 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
62956869 TTATGAATAC
62956879 ATCATGTACATATCATA-CA
1 ATCATGTACATATCATATCA
*
62956898 TATCATGTGCATATCATATCA
1 -ATCATGTACATATCATATCA
62956919 ATCATGTA
1 ATCATGTA
62956927 TATCAAAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (20 bp):
ATCATGTACATATCATATCA
Found at i:62956910 original size:11 final size:11
Alignment explanation
Indices: 62956879--62956926 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 11
62956869 TTATGAATAC
62956879 ATCATGTACAT
1 ATCATGTACAT
62956890 ATCA--TACAT
1 ATCATGTACAT
*
62956899 ATCATGTGCAT
1 ATCATGTACAT
*
62956910 ATCATAT-CA-
1 ATCATGTACAT
62956919 ATCATGTA
1 ATCATGTA
62956927 TATCAAAATC
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
9 15 0.48
10 2 0.06
11 14 0.45
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (11 bp):
ATCATGTACAT
Found at i:62956989 original size:25 final size:25
Alignment explanation
Indices: 62956961--62957008 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
62956951 ATAAGTAAAC
* * *
62956961 CCTAGGGGTATAACGGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
62956986 CCTAGGGGCAAAACAGTCATTTT
1 CCTAGGGGCAAAACAGTCATTTT
62957009 CATAATATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:62958332 original size:11 final size:11
Alignment explanation
Indices: 62958316--62958340 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
62958306 GACACAAGTG
62958316 AAAAAAAAGAA
1 AAAAAAAAGAA
62958327 AAAAAAAAGAA
1 AAAAAAAAGAA
62958338 AAA
1 AAA
62958341 TGCCACCCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAGAA
Found at i:62964188 original size:43 final size:43
Alignment explanation
Indices: 62964140--62964244 Score: 117
Period size: 44 Copynumber: 2.4 Consensus size: 43
62964130 ATGCCAATGC
62964140 CCCAGACGTGGTCTTACATGT-AATCA-AACATCGATACC-ACTGT
1 CCCAGACGTGGTCTTACATGTAAAT-AGAA-ATCGATACCAAC-GT
* * * *
62964183 CCCAGACATGGTTTTACATGTAAAATAGAAGTCGATGCCAACGT
1 CCCAGACGTGGTCTTACATGT-AAATAGAAATCGATACCAACGT
62964227 CCCAGACGTGGTCTTACA
1 CCCAGACGTGGTCTTACA
62964245 CGAAATCCTA
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
43 19 0.37
44 26 0.50
45 7 0.13
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (43 bp):
CCCAGACGTGGTCTTACATGTAAATAGAAATCGATACCAACGT
Found at i:62975317 original size:27 final size:25
Alignment explanation
Indices: 62975278--62975336 Score: 64
Period size: 27 Copynumber: 2.3 Consensus size: 25
62975268 ACATATATAT
*
62975278 ATATCTGTTTGGTGGCCTAGCCACA
1 ATATCTGTTTGGTGACCTAGCCACA
* * *
62975303 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-T-TGGTGACCTAGCCACA
62975330 ATATCTG
1 ATATCTG
62975337 GCAGCCTTGC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 8 0.29
26 1 0.04
27 19 0.68
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (25 bp):
ATATCTGTTTGGTGACCTAGCCACA
Found at i:62986940 original size:22 final size:23
Alignment explanation
Indices: 62986898--62986940 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
62986888 TTTGTGTTTA
*
62986898 AGTTTTGAGGGTTATTATTTTTT
1 AGTTTTGAGGGTTAGTATTTTTT
62986921 AGTTTTG-GGGTTTAGT-TTTT
1 AGTTTTGAGGG-TTAGTATTTT
62986941 ATTTCCATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.14, C:0.00, G:0.26, T:0.60
Consensus pattern (23 bp):
AGTTTTGAGGGTTAGTATTTTTT
Found at i:62993523 original size:81 final size:81
Alignment explanation
Indices: 62993388--62993549 Score: 306
Period size: 81 Copynumber: 2.0 Consensus size: 81
62993378 ACAAAGATGC
*
62993388 GTCATCCCCTGATGTTATCACTGGTACAATTTCTCTCTATGATACTAATGTAATTGCTTTGATTG
1 GTCATCCCCTGATGTTATCACTGGTACAATTTCTCTCTATGATACTAATGTAATTGCATTGATTG
62993453 ATCCTGGATCGACTCA
66 ATCCTGGATCGACTCA
*
62993469 GTCATCCCCTGATGTTATCACTGGTACATTTTCTCTCTATGATACTAATGTAATTGCATTGATTG
1 GTCATCCCCTGATGTTATCACTGGTACAATTTCTCTCTATGATACTAATGTAATTGCATTGATTG
62993534 ATCCTGGATCGACTCA
66 ATCCTGGATCGACTCA
62993550 TTCTTATATT
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.38
Consensus pattern (81 bp):
GTCATCCCCTGATGTTATCACTGGTACAATTTCTCTCTATGATACTAATGTAATTGCATTGATTG
ATCCTGGATCGACTCA
Found at i:63003693 original size:109 final size:109
Alignment explanation
Indices: 63003499--63003738 Score: 426
Period size: 109 Copynumber: 2.2 Consensus size: 109
63003489 CTTGAGCACA
*
63003499 GCCTAGACACACGGGCGTGTCTTGTGGCCATGTGGTTAAGTCTGTATGTATGCCCTATTTTGCCA
1 GCCTAGTCACACGGGCGTGTCTTGTGGCCATGTGGTTAAGTCTGTATGTATGCCCTATTTTGCCA
*
63003564 CGGCCTAGACACACGAGCTTGTCTAATGCCGTGTGAGGCACACG
66 CGGCCTAAACACACGAGCTTGTCTAATGCCGTGTGAGGCACACG
* * *
63003608 GCCTAGTGACACAGGCGTGTCTTGTGGCCATGTGGTTAAGTCTGTATGTATGCCCTATTTTTCCA
1 GCCTAGTCACACGGGCGTGTCTTGTGGCCATGTGGTTAAGTCTGTATGTATGCCCTATTTTGCCA
*
63003673 CGGCCTAAACACACGGGCTTGTCTAATGCCGTGTGAGGCACACG
66 CGGCCTAAACACACGAGCTTGTCTAATGCCGTGTGAGGCACACG
63003717 GCCTAGTCACACGGGCGTGTCT
1 GCCTAGTCACACGGGCGTGTCT
63003739 AATGCCATGT
Statistics
Matches: 123, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
109 123 1.00
ACGTcount: A:0.19, C:0.26, G:0.28, T:0.27
Consensus pattern (109 bp):
GCCTAGTCACACGGGCGTGTCTTGTGGCCATGTGGTTAAGTCTGTATGTATGCCCTATTTTGCCA
CGGCCTAAACACACGAGCTTGTCTAATGCCGTGTGAGGCACACG
Found at i:63003718 original size:42 final size:42
Alignment explanation
Indices: 63003671--63003778 Score: 171
Period size: 42 Copynumber: 2.6 Consensus size: 42
63003661 CCTATTTTTC
** * *
63003671 CACGGCCTAAACACACGGGCTTGTCTAATGCCGTGTGAGGCA
1 CACGGCCTAGTCACACGGGCGTGTCTAATGCCATGTGAGGCA
63003713 CACGGCCTAGTCACACGGGCGTGTCTAATGCCATGTGAGGCA
1 CACGGCCTAGTCACACGGGCGTGTCTAATGCCATGTGAGGCA
*
63003755 CACGACCTAGTCACACGGGCGTGT
1 CACGGCCTAGTCACACGGGCGTGT
63003779 GACCTTTGTA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 61 1.00
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.19
Consensus pattern (42 bp):
CACGGCCTAGTCACACGGGCGTGTCTAATGCCATGTGAGGCA
Found at i:63005224 original size:27 final size:27
Alignment explanation
Indices: 63005194--63005371 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
63005184 ATATTGAGTC
* * * *
63005194 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
63005221 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63005248 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
63005276 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
63005303 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
63005330 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63005357 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63005372 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:63005333 original size:82 final size:81
Alignment explanation
Indices: 63005215--63005370 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
63005205 TGCTATATAA
* *
63005215 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
63005280 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
63005297 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
63005361 CACTTAGTGC
65 CACTTAGTGC
63005371 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:63011337 original size:27 final size:27
Alignment explanation
Indices: 63011307--63011484 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
63011297 ATATTGAGTC
* * * *
63011307 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
63011334 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63011361 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
63011389 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
63011416 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
63011443 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63011470 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63011485 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:63011446 original size:82 final size:81
Alignment explanation
Indices: 63011328--63011483 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
63011318 TGCTATATAA
* *
63011328 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
63011393 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
63011410 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
63011474 CACTTAGTGC
65 CACTTAGTGC
63011484 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:63021470 original size:17 final size:16
Alignment explanation
Indices: 63021444--63021475 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
63021434 TGTAAAAGTT
63021444 GGGTTCTAATAGCTAA
1 GGGTTCTAATAGCTAA
63021460 GGGTGTCTAATAGCTA
1 GGGT-TCTAATAGCTA
63021476 TGAAACTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.31
Consensus pattern (16 bp):
GGGTTCTAATAGCTAA
Found at i:63022328 original size:50 final size:50
Alignment explanation
Indices: 63022272--63022375 Score: 199
Period size: 50 Copynumber: 2.1 Consensus size: 50
63022262 TTACGTCATT
*
63022272 TTTGTAATCGAGGTAAGTTCGTATGTTTAATAAGCATTGAATTATACGTA
1 TTTGTAATCGAGGTAAGTTCGTATGTTTAATAAGCATTGAATTATACGAA
63022322 TTTGTAATCGAGGTAAGTTCGTATGTTTAATAAGCATTGAATTATACGAA
1 TTTGTAATCGAGGTAAGTTCGTATGTTTAATAAGCATTGAATTATACGAA
63022372 TTTG
1 TTTG
63022376 AATGCTTAAT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (50 bp):
TTTGTAATCGAGGTAAGTTCGTATGTTTAATAAGCATTGAATTATACGAA
Found at i:63022352 original size:23 final size:23
Alignment explanation
Indices: 63022276--63022352 Score: 59
Period size: 23 Copynumber: 3.2 Consensus size: 23
63022266 GTCATTTTTG
63022276 TAATCGAGGTAAGTTCGTATGTT
1 TAATCGAGGTAAGTTCGTATGTT
* * *
63022299 TAAT-AAGCATTGAATTATACGTAT-TT
1 TAATCGAG--GT-AAGT-T-CGTATGTT
63022325 GTAATCGAGGTAAGTTCGTATGTT
1 -TAATCGAGGTAAGTTCGTATGTT
63022349 TAAT
1 TAAT
63022353 AAGCATTGAA
Statistics
Matches: 40, Mismatches: 6, Indels: 16
0.65 0.10 0.26
Matches are distributed among these distances:
22 2 0.05
23 13 0.32
24 4 0.10
25 6 0.15
26 4 0.10
27 9 0.22
28 2 0.05
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (23 bp):
TAATCGAGGTAAGTTCGTATGTT
Found at i:63024702 original size:10 final size:10
Alignment explanation
Indices: 63024676--63024722 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
63024666 ACTTGGGTTG
*
63024676 AGAATTGGCC
1 AGAATGGGCC
63024686 A-AATGGGCC
1 AGAATGGGCC
*
63024695 AGAATGGGCT
1 AGAATGGGCC
63024705 A-AATGGGCC
1 AGAATGGGCC
*
63024714 GGAATGGGC
1 AGAATGGGC
63024723 TGTTGGGCCC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
9 15 0.48
10 16 0.52
ACGTcount: A:0.30, C:0.17, G:0.38, T:0.15
Consensus pattern (10 bp):
AGAATGGGCC
Found at i:63024708 original size:19 final size:19
Alignment explanation
Indices: 63024676--63024723 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
63024666 ACTTGGGTTG
* *
63024676 AGAATTGGCCAAATGGGCC
1 AGAATGGGCTAAATGGGCC
63024695 AGAATGGGCTAAATGGGCC
1 AGAATGGGCTAAATGGGCC
*
63024714 GGAATGGGCT
1 AGAATGGGCT
63024724 GTTGGGCCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.29, C:0.17, G:0.38, T:0.17
Consensus pattern (19 bp):
AGAATGGGCTAAATGGGCC
Found at i:63024862 original size:29 final size:29
Alignment explanation
Indices: 63024797--63024904 Score: 98
Period size: 28 Copynumber: 3.8 Consensus size: 29
63024787 GCATGAGTAT
* * *
63024797 AATATGATTTAGGCCTAATGGGCCATATA-
1 AATATGAATTGGGCCTAGTGGGCCATA-AG
**
63024826 AAGGTGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAATTGGGCCTAGTGGGCCATAAG
**
63024855 AATATGAA-TGGGCC-AGATGGGCCATTTG
1 AATATGAATTGGGCCTAG-TGGGCCATAAG
*
63024883 AATAAG-ATTGGGCCTAGTGGGC
1 AATATGAATTGGGCCTAGTGGGC
63024905 TATATGCATG
Statistics
Matches: 65, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
27 3 0.05
28 32 0.49
29 30 0.46
ACGTcount: A:0.30, C:0.14, G:0.31, T:0.25
Consensus pattern (29 bp):
AATATGAATTGGGCCTAGTGGGCCATAAG
Found at i:63032116 original size:16 final size:16
Alignment explanation
Indices: 63032091--63032134 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
63032081 ATGAATCGGC
*
63032091 AAAAGCCGAAATGCTG
1 AAAAGCCGAAAAGCTG
*
63032107 AAAAGTCGAAAAGCTG
1 AAAAGCCGAAAAGCTG
63032123 AAATA-CCGAAAA
1 AAA-AGCCGAAAA
63032135 ATCAAAAGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 23 0.96
17 1 0.04
ACGTcount: A:0.52, C:0.16, G:0.20, T:0.11
Consensus pattern (16 bp):
AAAAGCCGAAAAGCTG
Found at i:63032133 original size:24 final size:23
Alignment explanation
Indices: 63032090--63032142 Score: 61
Period size: 24 Copynumber: 2.3 Consensus size: 23
63032080 AATGAATCGG
* * *
63032090 CAAAAGCCGAAATGCTGAAAAGT
1 CAAAAGCCGAAATACCGAAAAAT
*
63032113 CGAAAAGCTGAAATACCGAAAAAT
1 C-AAAAGCCGAAATACCGAAAAAT
63032137 CAAAAG
1 CAAAAG
63032143 TTGGGCTACG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
23 6 0.24
24 19 0.76
ACGTcount: A:0.53, C:0.17, G:0.19, T:0.11
Consensus pattern (23 bp):
CAAAAGCCGAAATACCGAAAAAT
Found at i:63032422 original size:29 final size:29
Alignment explanation
Indices: 63032357--63032471 Score: 108
Period size: 29 Copynumber: 4.0 Consensus size: 29
63032347 GCATGAGTAT
* *
63032357 AATATGATTTGGGCCTAATGGGCCATATG
1 AATATGAATTGGGCCTAGTGGGCCATATG
** *
63032386 AAGGTGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAATTGGGCCTAGTGGGCCATATG
* * *
63032415 AATATGAACTAGG-CTAGATGGGCCATTTG
1 AATATGAATTGGGCCTAG-TGGGCCATATG
* * *
63032444 AATAAG-ATTGGGCCTAGTAGGCTATATG
1 AATATGAATTGGGCCTAGTGGGCCATATG
63032472 CATGTATTTA
Statistics
Matches: 67, Mismatches: 17, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
28 16 0.24
29 51 0.76
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.27
Consensus pattern (29 bp):
AATATGAATTGGGCCTAGTGGGCCATATG
Found at i:63033538 original size:17 final size:18
Alignment explanation
Indices: 63033505--63033539 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
63033495 GTTTAAGAAG
63033505 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
*
63033523 GGTTTTCACT-AAAACAC
1 GGTTTTCAATGAAAACAC
63033540 TTCAATGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:63037367 original size:42 final size:42
Alignment explanation
Indices: 63037315--63037417 Score: 154
Period size: 42 Copynumber: 2.5 Consensus size: 42
63037305 ATTCCAATAG
* *
63037315 CCCAGCTATGGTCTTACACGAAGTATCATATCA-ATGCCATGT
1 CCCAGATATGGTCTTACACGAAGTATCATAT-AGATGCCATAT
*
63037357 CCCAGATATGGTCTTACACGAAGTCTCATATAGATGCCATAT
1 CCCAGATATGGTCTTACACGAAGTATCATATAGATGCCATAT
*
63037399 CCCAGATATAGTCTTACAC
1 CCCAGATATGGTCTTACAC
63037418 ATTATCTTAG
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
41 1 0.02
42 55 0.98
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (42 bp):
CCCAGATATGGTCTTACACGAAGTATCATATAGATGCCATAT
Found at i:63043195 original size:16 final size:16
Alignment explanation
Indices: 63043174--63043208 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
63043164 ATGAATCGGC
*
63043174 AAAAGCCGAAATGCTG
1 AAAAGCCGAAAAGCTG
63043190 AAAAGCCGAAAAGCTG
1 AAAAGCCGAAAAGCTG
63043206 AAA
1 AAA
63043209 TACTGAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.51, C:0.17, G:0.23, T:0.09
Consensus pattern (16 bp):
AAAAGCCGAAAAGCTG
Found at i:63043223 original size:24 final size:24
Alignment explanation
Indices: 63043174--63043224 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
63043164 ATGAATCGGC
* *
63043174 AAAAGCCGAAATGCTGAAAAGCCG
1 AAAAGCCGAAATACTGAAAAACCG
* *
63043198 AAAAGCTGAAATACTGAAAAATCG
1 AAAAGCCGAAATACTGAAAAACCG
63043222 AAA
1 AAA
63043225 GTTGGGCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.53, C:0.16, G:0.20, T:0.12
Consensus pattern (24 bp):
AAAAGCCGAAATACTGAAAAACCG
Found at i:63043505 original size:29 final size:29
Alignment explanation
Indices: 63043440--63043554 Score: 108
Period size: 29 Copynumber: 4.0 Consensus size: 29
63043430 GCATGAGTAT
* *
63043440 AATATGATTTGGGCCTAATGGGCCATATG
1 AATATGAATTGGGCCTAGTGGGCCATATG
** *
63043469 AAGGTGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAATTGGGCCTAGTGGGCCATATG
* * *
63043498 AATATGAACTAGGCC-AGATGGGCCATTTG
1 AATATGAATTGGGCCTAG-TGGGCCATATG
* * *
63043527 ATTAAG-ATTGGGCCTAGTGGGCTATATG
1 AATATGAATTGGGCCTAGTGGGCCATATG
63043555 CATGTATTTA
Statistics
Matches: 67, Mismatches: 17, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
28 17 0.25
29 50 0.75
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (29 bp):
AATATGAATTGGGCCTAGTGGGCCATATG
Found at i:63045351 original size:11 final size:11
Alignment explanation
Indices: 63045335--63045359 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
63045325 TTTTAGCTTG
63045335 ACACTTTCTTA
1 ACACTTTCTTA
63045346 ACACTTTCTTA
1 ACACTTTCTTA
63045357 ACA
1 ACA
63045360 ATTAATAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.28, G:0.00, T:0.40
Consensus pattern (11 bp):
ACACTTTCTTA
Found at i:63048565 original size:11 final size:11
Alignment explanation
Indices: 63048549--63048573 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
63048539 TTTTAGCTTG
63048549 ACACTTTCTTA
1 ACACTTTCTTA
63048560 ACACTTTCTTA
1 ACACTTTCTTA
63048571 ACA
1 ACA
63048574 ATTAATAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.28, G:0.00, T:0.40
Consensus pattern (11 bp):
ACACTTTCTTA
Found at i:63050477 original size:42 final size:42
Alignment explanation
Indices: 63050371--63050524 Score: 168
Period size: 42 Copynumber: 3.6 Consensus size: 42
63050361 ACTATACAAT
* * * * * *
63050371 TGCCATATCCCAGATATGGTCATACA-TAGGATCTCGTATCGA
1 TGCCATATCCCAGATATGGTCTTACACGAAG-TATCATATCAA
* *
63050413 TGCCAATAGCCCAGCTATGGTCTTACACGAAGTATCATATCAA
1 TGCC-ATATCCCAGATATGGTCTTACACGAAGTATCATATCAA
*
63050456 TGCCATATCCCAGATATGGTCTTACACGAAGTTTCATAT-AGA
1 TGCCATATCCCAGATATGGTCTTACACGAAGTATCATATCA-A
* *
63050498 TGCCATATCCCAGATATAGCCTTACAC
1 TGCCATATCCCAGATATGGTCTTACAC
63050525 ATTATCTTAG
Statistics
Matches: 96, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
41 1 0.01
42 62 0.65
43 31 0.32
44 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (42 bp):
TGCCATATCCCAGATATGGTCTTACACGAAGTATCATATCAA
Found at i:63056698 original size:42 final size:44
Alignment explanation
Indices: 63056594--63056714 Score: 149
Period size: 44 Copynumber: 2.8 Consensus size: 44
63056584 TGTGTTATCA
* * *
63056594 TGTAAGACCATGTTTGGAACATTGGCATTGAT-TTGTGATTTATG
1 TGTAAGACCATGTTTGGGACATTGGCA-TCATATTGTGATTTACG
63056638 TGTAAGACCATGTTTGGGACATTGGCATCATATT-TGATTT-CG
1 TGTAAGACCATGTTTGGGACATTGGCATCATATTGTGATTTACG
* * *
63056680 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATT
1 TGTAAGACCATGTTTGGGACATTGGCATC-ATATT
63056715 CTAAATGGTT
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
42 27 0.39
43 14 0.20
44 28 0.41
ACGTcount: A:0.24, C:0.14, G:0.26, T:0.36
Consensus pattern (44 bp):
TGTAAGACCATGTTTGGGACATTGGCATCATATTGTGATTTACG
Found at i:63059360 original size:10 final size:10
Alignment explanation
Indices: 63059345--63059404 Score: 86
Period size: 10 Copynumber: 6.0 Consensus size: 10
63059335 TTATTTTAGG
63059345 ATTTAT-TTT
1 ATTTATCTTT
63059354 CATTTATCTTT
1 -ATTTATCTTT
63059365 ATTTATCTTT
1 ATTTATCTTT
*
63059375 AATTATCTTT
1 ATTTATCTTT
*
63059385 ATTTATTTTT
1 ATTTATCTTT
63059395 ATTTATCTTT
1 ATTTATCTTT
63059405 TAGAATTTCA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
10 42 0.93
11 3 0.07
ACGTcount: A:0.22, C:0.08, G:0.00, T:0.70
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:63060101 original size:17 final size:17
Alignment explanation
Indices: 63060079--63060111 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
63060069 ACCACATAAG
63060079 AAACTTTCTTTATTTTC
1 AAACTTTCTTTATTTTC
*
63060096 AAACTTTGTTTATTTT
1 AAACTTTCTTTATTTT
63060112 TTTTCCATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.12, G:0.03, T:0.61
Consensus pattern (17 bp):
AAACTTTCTTTATTTTC
Found at i:63065510 original size:79 final size:82
Alignment explanation
Indices: 63065399--63065583 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
63065389 GCTACTCGTT
* *
63065399 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
63065462 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
63065479 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
63065542 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
63065559 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63065584 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:63065583 original size:40 final size:40
Alignment explanation
Indices: 63065380--63065583 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
63065370 CGGAATTTAA
** *
63065380 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
63065420 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
63065460 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
63065499 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
63065539 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
63065579 CCGGA
1 CCGGA
63065584 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:63079204 original size:19 final size:19
Alignment explanation
Indices: 63079182--63079248 Score: 52
Period size: 17 Copynumber: 3.6 Consensus size: 19
63079172 TTTATTTCTA
63079182 TCTTTTATTATTTTTTATT
1 TCTTTTATTATTTTTTATT
*
63079201 TC--TTACTT-TATTTTATT
1 TCTTTTA-TTATTTTTTATT
*
63079218 TCATTTTGTTTATTTTTTA-T
1 TC-TTTT-ATTATTTTTTATT
*
63079238 TATTTTATTAT
1 TCTTTTATTAT
63079249 ATTAATAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 13
0.67 0.09 0.24
Matches are distributed among these distances:
17 13 0.35
18 6 0.16
19 6 0.16
20 6 0.16
21 6 0.16
ACGTcount: A:0.18, C:0.06, G:0.01, T:0.75
Consensus pattern (19 bp):
TCTTTTATTATTTTTTATT
Found at i:63079209 original size:23 final size:24
Alignment explanation
Indices: 63079171--63079218 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
63079161 TAATTTTTAA
63079171 TTTTATTTCTATCTTT-TATTATT
1 TTTTATTTCTATCTTTATATTATT
*
63079194 TTTTATTTCT-TACTTTATTTTATT
1 TTTTATTTCTAT-CTTTATATTATT
63079218 T
1 T
63079219 CATTTTGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 1 0.05
23 14 0.64
24 7 0.32
ACGTcount: A:0.17, C:0.08, G:0.00, T:0.75
Consensus pattern (24 bp):
TTTTATTTCTATCTTTATATTATT
Found at i:63082732 original size:10 final size:10
Alignment explanation
Indices: 63082717--63082768 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
63082707 TTATTTTAGG
63082717 ATTTATTTTT
1 ATTTATTTTT
*
63082727 ATTTATCTTT
1 ATTTATTTTT
* *
63082737 AATTATCTTT
1 ATTTATTTTT
*
63082747 ATTTATTTAT
1 ATTTATTTTT
63082757 ATTTATCTTTT
1 ATTTAT-TTTT
63082768 A
1 A
63082769 GAATTTCATT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
10 31 0.89
11 4 0.11
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:63083694 original size:12 final size:12
Alignment explanation
Indices: 63083677--63083709 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
63083667 CTACTTCCCC
63083677 TTTACTATTATT
1 TTTACTATTATT
63083689 TTTACTATTATT
1 TTTACTATTATT
63083701 TTTACTATT
1 TTTACTATT
63083710 TTGCAGGGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (12 bp):
TTTACTATTATT
Found at i:63095722 original size:83 final size:83
Alignment explanation
Indices: 63095583--63095748 Score: 323
Period size: 83 Copynumber: 2.0 Consensus size: 83
63095573 ATTTGGTAGC
*
63095583 TCCACTTACTTCTTTATTTCGACTCGGCAAGTCTCGTTTGTTGGACCCTTGCCCCCACTTAGTCG
1 TCCACTTACTTCTTTATTTCGACTCGGCAAGTCTCGTTTGTTGGACCCTTGCCCCCACTTAGTCA
63095648 TAGAAGAAGTATTAGGGA
66 TAGAAGAAGTATTAGGGA
63095666 TCCACTTACTTCTTTATTTCGACTCGGCAAGTCTCGTTTGTTGGACCCTTGCCCCCACTTAGTCA
1 TCCACTTACTTCTTTATTTCGACTCGGCAAGTCTCGTTTGTTGGACCCTTGCCCCCACTTAGTCA
63095731 TAGAAGAAGTATTAGGGA
66 TAGAAGAAGTATTAGGGA
63095749 AAGAACGGAA
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 82 1.00
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.34
Consensus pattern (83 bp):
TCCACTTACTTCTTTATTTCGACTCGGCAAGTCTCGTTTGTTGGACCCTTGCCCCCACTTAGTCA
TAGAAGAAGTATTAGGGA
Found at i:63096075 original size:79 final size:78
Alignment explanation
Indices: 63095944--63096100 Score: 305
Period size: 79 Copynumber: 2.0 Consensus size: 78
63095934 TCCATTTCCT
63095944 TGTAGTAATCCTCCACGCTTCGTTGGCCTTGAGTTAAGCTTTGGAGCTTTTGATACAACTCCCGG
1 TGTAGTAATCCTCCACGCTTCGTTGGCCTTGAGTTAAGCTTTGGAGCTTTTGATACAACTCCCGG
63096009 TGATAGTAAGCAG
66 TGATAGTAAGCAG
63096022 NTGTAGTAATCCTCCACGCTTCGTTGGCCTTGAGTTAAGCTTTGGAGCTTTTGATACAACTCCCG
1 -TGTAGTAATCCTCCACGCTTCGTTGGCCTTGAGTTAAGCTTTGGAGCTTTTGATACAACTCCCG
63096087 GTGATAGTAAGCAG
65 GTGATAGTAAGCAG
63096101 GAATGAATCG
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (78 bp):
TGTAGTAATCCTCCACGCTTCGTTGGCCTTGAGTTAAGCTTTGGAGCTTTTGATACAACTCCCGG
TGATAGTAAGCAG
Found at i:63097200 original size:13 final size:13
Alignment explanation
Indices: 63097182--63097219 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
63097172 AGACCGTATG
63097182 CAATTTTTTTTTT
1 CAATTTTTTTTTT
63097195 CAATTTTTTTTTT
1 CAATTTTTTTTTT
63097208 CAATTTTTTTTT
1 CAATTTTTTTTT
63097220 GATTTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (13 bp):
CAATTTTTTTTTT
Found at i:63097203 original size:11 final size:11
Alignment explanation
Indices: 63097187--63097229 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
63097177 GTATGCAATT
63097187 TTTTTTTTCAA
1 TTTTTTTTCAA
63097198 TTTTTTTTTTCAA
1 --TTTTTTTTCAA
**
63097211 TTTTTTTTTGA
1 TTTTTTTTCAA
63097222 TTTTTTTT
1 TTTTTTTT
63097230 ATTTCTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
11 17 0.61
13 11 0.39
ACGTcount: A:0.12, C:0.05, G:0.02, T:0.81
Consensus pattern (11 bp):
TTTTTTTTCAA
Found at i:63097211 original size:26 final size:27
Alignment explanation
Indices: 63097182--63097243 Score: 78
Period size: 25 Copynumber: 2.4 Consensus size: 27
63097172 AGACCGTATG
63097182 CAATTTTTTTTTTCAATTTTTTT-TTT
1 CAATTTTTTTTTTCAATTTTTTTATTT
* *
63097208 CAA-TTTTTTTTTGATTTTTTTTATTT
1 CAATTTTTTTTTTCAATTTTTTTATTT
63097234 C--TTTTTTTTT
1 CAATTTTTTTTT
63097244 GAATCTACAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
25 25 0.78
26 7 0.22
ACGTcount: A:0.13, C:0.06, G:0.02, T:0.79
Consensus pattern (27 bp):
CAATTTTTTTTTTCAATTTTTTTATTT
Found at i:63097227 original size:13 final size:13
Alignment explanation
Indices: 63097185--63097243 Score: 68
Period size: 13 Copynumber: 4.6 Consensus size: 13
63097175 CCGTATGCAA
*
63097185 TTTTTTTTTTCAA
1 TTTTTTTTTTCAT
63097198 TTTTTTTTTTCA-
1 TTTTTTTTTTCAT
* *
63097210 ATTTTTTTTTGAT
1 TTTTTTTTTTCAT
63097223 TTTTTTTATTTC-T
1 TTTTTTT-TTTCAT
63097236 TTTTTTTT
1 TTTTTTTT
63097244 GAATCTACAA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
12 11 0.28
13 26 0.65
14 3 0.08
ACGTcount: A:0.10, C:0.05, G:0.02, T:0.83
Consensus pattern (13 bp):
TTTTTTTTTTCAT
Found at i:63102398 original size:26 final size:26
Alignment explanation
Indices: 63102367--63102419 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
63102357 AACATACTAG
63102367 ATTCCTTATTTATTATTTATATACTT
1 ATTCCTTATTTATTATTTATATACTT
63102393 ATTCCTTATTTATTATTTATATACTT
1 ATTCCTTATTTATTATTTATATACTT
63102419 A
1 A
63102420 CTTACTAAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.11, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTCCTTATTTATTATTTATATACTT
Found at i:63106508 original size:100 final size:100
Alignment explanation
Indices: 63106391--63106973 Score: 1049
Period size: 100 Copynumber: 5.8 Consensus size: 100
63106381 GAAGCTATCT
* * *
63106391 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCT
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTAGTACACGTAGTAGCC
* * *
63106456 TGCACTTAGTACTACACATGTGATCACATTTTTCG
66 TGCATTTAGTACTACACACGTGATCACAGTTTTCG
* * *
63106491 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCT
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTAGTACACGTAGTAGCC
* * *
63106556 TGCACTTAGTACTACACATGTGATCACATTTTTCG
66 TGCATTTAGTACTACACACGTGATCACAGTTTTCG
*
63106591 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTAGTACACGTAGTAGCC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTAGTACACGTAGTAGCC
63106656 TGCATTTAGTACTACACACGTGATCACAGTTTTCG
66 TGCATTTAGTACTACACACGTGATCACAGTTTTCG
63106691 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTAGTACACGTAGTAGCC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTAGTACACGTAGTAGCC
63106756 TGCATTTAGTACTACACACGTGATCACAGTTTTCG
66 TGCATTTAGTACTACACACGTGATCACAGTTTTCG
63106791 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTAGTACACGTAGTAGCC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTAGTACACGTAGTAGCC
63106856 TGCATTTAGTACTACACACGTGATCACAGTTTTCG
66 TGCATTTAGTACTACACACGTGATCACAGTTTTCG
63106891 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTAGTACACGTAGTAGCC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTAGTACACGTAGTAGCC
63106956 TGCATTTAGTACTACACA
66 TGCATTTAGTACTACACA
63106974 AAGTGTCGAT
Statistics
Matches: 477, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
100 477 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (100 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTAGTACACGTAGTAGCC
TGCATTTAGTACTACACACGTGATCACAGTTTTCG
Found at i:63109278 original size:15 final size:15
Alignment explanation
Indices: 63109258--63109286 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
63109248 ATAGTAAAAC
63109258 CCAGAATAAAGAAAT
1 CCAGAATAAAGAAAT
63109273 CCAGAATAAAGAAA
1 CCAGAATAAAGAAA
63109287 CCGAAGATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.14, G:0.14, T:0.10
Consensus pattern (15 bp):
CCAGAATAAAGAAAT
Found at i:63112410 original size:51 final size:49
Alignment explanation
Indices: 63112293--63112433 Score: 174
Period size: 51 Copynumber: 2.8 Consensus size: 49
63112283 GAAGCTATTT
* * * *
63112293 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCT
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATAATCG
* * * * **
63112342 AGTACACGTAGTAGCCTGCATTTAGTACTACACACGTGATCACAGTTTTCG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATAATCG
63112393 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
63112434 TCACAATAGT
Statistics
Matches: 77, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
49 34 0.44
50 2 0.03
51 41 0.53
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATAATCG
Found at i:63113118 original size:30 final size:30
Alignment explanation
Indices: 63113082--63113138 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
63113072 AAAATCATAT
*
63113082 TTTTACAAATTTTCA-TTTTGACCCCAAAAC
1 TTTTACAAATTTGCACTTTTG-CCCCAAAAC
*
63113112 TTTTACATATTTGCACTTTTGCCCCAA
1 TTTTACAAATTTGCACTTTTGCCCCAA
63113139 TGTTCAGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.28, C:0.25, G:0.05, T:0.42
Consensus pattern (30 bp):
TTTTACAAATTTGCACTTTTGCCCCAAAAC
Found at i:63119522 original size:24 final size:24
Alignment explanation
Indices: 63119468--63119548 Score: 78
Period size: 24 Copynumber: 3.4 Consensus size: 24
63119458 GTCATGGTCG
* *
63119468 GTAAGCTCTTACTGAGCTGATAAACA
1 GTAAGCTC-TATTGAGATGA-AAACA
63119494 GTAAGCTCTATTGAGATGAAAACTA
1 GTAAGCTCTATTGAGATGAAAAC-A
* *
63119519 -TAAGCTTTATTGAGTTG--AACA
1 GTAAGCTCTATTGAGATGAAAACA
63119540 GTAAGCTCT
1 GTAAGCTCT
63119549 TTCGAGCTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
21 1 0.02
22 10 0.21
24 19 0.40
25 10 0.21
26 8 0.17
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (24 bp):
GTAAGCTCTATTGAGATGAAAACA
Found at i:63119599 original size:23 final size:22
Alignment explanation
Indices: 63119539--63119599 Score: 52
Period size: 23 Copynumber: 2.7 Consensus size: 22
63119529 TGAGTTGAAC
*
63119539 AGTAAGCTCTT-TCGAGCTAAAT
1 AGTAAGCTCTTAT-GACCTAAAT
* **
63119561 CGATAAGCTCCAATGACCTGAAAT
1 AG-TAAGCTCTTATGACCT-AAAT
63119585 AGTAAGCTCTTATGA
1 AGTAAGCTCTTATGA
63119600 GCTATTGCGA
Statistics
Matches: 29, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
22 1 0.03
23 22 0.76
24 6 0.21
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (22 bp):
AGTAAGCTCTTATGACCTAAAT
Found at i:63123130 original size:39 final size:39
Alignment explanation
Indices: 63123050--63123301 Score: 380
Period size: 39 Copynumber: 6.5 Consensus size: 39
63123040 CGAGACTTTA
* * *
63123050 AGCCCGGATATAATACCAGCAC-AAAGCCTGCGGGACTTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGAC-TT
*
63123089 AGCCCGGATATAACACCGGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
* *
63123128 AGCCCGGATATAACACCAGCACGAATACCTTCGGAACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
* *
63123167 AGCTCGGATATAACACCAGCACGAATGCCTTCAGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
* *
63123206 AGCCCGGATATAACACCAGCATGAATGCCTTCAGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
*
63123245 AGCCCGGATATAACACCAACACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
*
63123284 AGCCTGGATATAACACCA
1 AGCCCGGATATAACACCA
63123302 TTATAAAGTC
Statistics
Matches: 195, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 183 0.94
40 12 0.06
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.19
Consensus pattern (39 bp):
AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
Found at i:63123416 original size:28 final size:28
Alignment explanation
Indices: 63123385--63123455 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
63123375 AAATATTTTT
*
63123385 CACACTAAGTGTCATTCTCAATATCTCG
1 CACACTAAGTGCCATTCTCAATATCTCG
* *
63123413 CACATTAAGTGCCATTCTCAATATTTCG
1 CACACTAAGTGCCATTCTCAATATCTCG
* * *
63123441 TACACTGAGTACCAT
1 CACACTAAGTGCCAT
63123456 ATTTGATTGC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.32
Consensus pattern (28 bp):
CACACTAAGTGCCATTCTCAATATCTCG
Found at i:63129818 original size:24 final size:24
Alignment explanation
Indices: 63129791--63129838 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
63129781 TATTGAGTCT
63129791 GTAAATCCGAAAGAAATTGTTAGA
1 GTAAATCCGAAAGAAATTGTTAGA
*
63129815 GTAAATCTGAAAGAAATTGTTAGA
1 GTAAATCCGAAAGAAATTGTTAGA
63129839 ATTATTTTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.46, C:0.06, G:0.21, T:0.27
Consensus pattern (24 bp):
GTAAATCCGAAAGAAATTGTTAGA
Found at i:63138417 original size:35 final size:35
Alignment explanation
Indices: 63138367--63138459 Score: 116
Period size: 35 Copynumber: 2.7 Consensus size: 35
63138357 ATTATTATTG
* **
63138367 ATTTTGATTCACATGTTAAGCATGCCGTTATACTA
1 ATTTTGATTCGCATGTTAAGCATGCCACTATACTA
*
63138402 ATTTTGATTCGCATGTTAAGCATGCCACTATACTG
1 ATTTTGATTCGCATGTTAAGCATGCCACTATACTA
* *
63138437 ATTTCGAATT-GCATGTAAAGCAT
1 ATTTTG-ATTCGCATGTTAAGCAT
63138460 ACCTATTGAA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
35 48 0.94
36 3 0.06
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (35 bp):
ATTTTGATTCGCATGTTAAGCATGCCACTATACTA
Found at i:63143915 original size:30 final size:30
Alignment explanation
Indices: 63143881--63143963 Score: 123
Period size: 30 Copynumber: 2.8 Consensus size: 30
63143871 TTTTTAACGT
*
63143881 AGAACAGCCACAAAGGCTTCCACA-TATCAA
1 AGAACAACCACAAAGGCTTCCACATTA-CAA
*
63143911 AGAACAACCACAAAGTCTTCCACATTACAA
1 AGAACAACCACAAAGGCTTCCACATTACAA
*
63143941 AGAACATCCACAAAGGCTTCCAC
1 AGAACAACCACAAAGGCTTCCAC
63143964 TTTTTAGTAA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 46 0.96
31 2 0.04
ACGTcount: A:0.43, C:0.31, G:0.11, T:0.14
Consensus pattern (30 bp):
AGAACAACCACAAAGGCTTCCACATTACAA
Found at i:63145698 original size:48 final size:48
Alignment explanation
Indices: 63145638--63145869 Score: 209
Period size: 48 Copynumber: 4.8 Consensus size: 48
63145628 AGTGGTGTTG
* * *
63145638 TGAGAGCCAGTGTAAGACCATGTCTAGGACATGGTATCGGCATTGATA
1 TGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGACA
* * * * **
63145686 TGTGTGCTAGTGTAAAACCATGTCTGGGACATGGCATCGGCCA-CAACA
1 TGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGG-CATTGACA
* * * * *
63145734 TGAGAGCCAGTGTAAGACCATGACTAGGATATGGCATCGGTATTGAGA
1 TGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGACA
* * ** * **
63145782 CGAGAGCTAGAGTAAGACCATGTCCGGGACATGGCATCGGCCTCAACA
1 TGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGACA
* *
63145830 TGTA-AGCCAGTGTAAGACCATGT-TTGGAACATGGCATCGG
1 TG-AGAGCTAGTGTAAGACCATGTCTAGG-ACATGGCATCGG
63145870 TAATTCACCC
Statistics
Matches: 143, Mismatches: 37, Indels: 8
0.76 0.20 0.04
Matches are distributed among these distances:
47 3 0.02
48 137 0.96
49 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (48 bp):
TGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGACA
Found at i:63145738 original size:96 final size:96
Alignment explanation
Indices: 63145638--63145869 Score: 315
Period size: 96 Copynumber: 2.4 Consensus size: 96
63145628 AGTGGTGTTG
* * * * * *
63145638 TGAGAGCCAGTGTAAGACCATGTCTAGGACATGGTATCGGCATTGATATGTGTGCTAGTGTAAAA
1 TGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGAGCTAGAGTAAAA
*
63145703 CCATGTCTGGGACATGGCATCGGCCACAACA
66 CCATGTCCGGGACATGGCATCGGCCACAACA
* * * *
63145734 TGAGAGCCAGTGTAAGACCATGACTAGGATATGGCATCGGTATTGAGACGAGAGCTAGAGTAAGA
1 TGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGAGCTAGAGTAAAA
*
63145799 CCATGTCCGGGACATGGCATCGGCCTCAACA
66 CCATGTCCGGGACATGGCATCGGCCACAACA
*
63145830 TGTA-AGCCAGTGTAAGACCATGT-TTGGAACATGGCATCGG
1 TG-AGAGCCAGTGTAAGACCATGTCTAGG-ACATGGCATCGG
63145870 TAATTCACCC
Statistics
Matches: 119, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
95 3 0.03
96 115 0.97
97 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (96 bp):
TGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGAGCTAGAGTAAAA
CCATGTCCGGGACATGGCATCGGCCACAACA
Found at i:63145803 original size:144 final size:143
Alignment explanation
Indices: 63145538--63145869 Score: 353
Period size: 144 Copynumber: 2.3 Consensus size: 143
63145528 GACATTTGGG
* * * * *
63145538 TGATATGTGTGCCACTGTAAGACCATGTATGGGACATGGCGTCAGCCACGATATGACAGCAGTGT
1 TGATATGTGTGCCAGTGTAAGACCATGTATGGGACATGGCATCGGCCACAACATGACAGCAGTGT
* * * * * * *
63145603 AAGACCATGTTTGGAACATGGCATCAGTGGTGTTGTGAGAGCCAGTGTAAGACCATGTCTAGGAC
66 AAGACCATGCTAGGAACATGGCATCAGTAGTGTAGCGAGAGCCAGAGTAAGACCATGTCCAGGAC
*
63145668 ATGGTATCGGCAT
131 ATGGCATCGGCAT
* * * *
63145681 TGATATGTGTGCTAGTGTAAAACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTG
1 TGATATGTGTGCCAGTGTAAGACCATGTATGGGACATGGCATCGGCCACAACATGACAG-CAGTG
* * * * *
63145746 TAAGACCATGACTAGG-ATATGGCATCGGTATTG-AGACGAGAGCTAGAGTAAGACCATGTCCGG
65 TAAGACCATG-CTAGGAACATGGCATCAGTAGTGTAG-CGAGAGCCAGAGTAAGACCATGTCCAG
*
63145809 GACATGGCATCGGCCT
128 GACATGGCATCGGCAT
** * ** * *
63145825 CAACATGTAAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGG
1 TGATATGTGTGCCAGTGTAAGACCATGTATGGGACATGGCATCGG
63145870 TAATTCACCC
Statistics
Matches: 154, Mismatches: 32, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
143 51 0.33
144 100 0.65
145 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (143 bp):
TGATATGTGTGCCAGTGTAAGACCATGTATGGGACATGGCATCGGCCACAACATGACAGCAGTGT
AAGACCATGCTAGGAACATGGCATCAGTAGTGTAGCGAGAGCCAGAGTAAGACCATGTCCAGGAC
ATGGCATCGGCAT
Found at i:63148669 original size:55 final size:54
Alignment explanation
Indices: 63148574--63148723 Score: 167
Period size: 55 Copynumber: 2.8 Consensus size: 54
63148564 GGTATCTTTA
* * * *
63148574 CCTTATA-AACTCACCATTGCCATGCCTTGGCATGGCCTTACATCAGATCTTTG
1 CCTTATAGAACTTACCAATGCCATGCCTTGGCATGGTCTTACATCAGATCCTTG
** * * * * **
63148627 CCTTATAGTAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTG
1 CCTTATAG-AACTTACCAATGCCATGCCTTGGCATGGTCTTACATCAGATCCTTG
*
63148682 CCTTGTAGAACTTACCAATGCCATGCCTTGGCATGGTCTTAC
1 CCTTATAGAACTTACCAATGCCATGCCTTGGCATGGTCTTAC
63148724 TTGGTATCCT
Statistics
Matches: 77, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
53 7 0.09
54 29 0.38
55 41 0.53
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (54 bp):
CCTTATAGAACTTACCAATGCCATGCCTTGGCATGGTCTTACATCAGATCCTTG
Found at i:63151178 original size:25 final size:23
Alignment explanation
Indices: 63151149--63151292 Score: 162
Period size: 24 Copynumber: 6.0 Consensus size: 23
63151139 GCTTTATCAT
* *
63151149 ATAACTGGAGGCCTAGCCTTTTTTA
1 ATAACTGG-GGCATAGCC-CTTTTA
*
63151174 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGC-ATAGCCCTTTTA
63151198 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCAT-AGCCCTTTTA
63151222 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCAT-AGCCCTTTTA
* * *
63151246 GTAACTAGGGCATAAGCCCTTTTG
1 ATAACTGGGGCAT-AGCCCTTTTA
*
63151270 ATAACTGAGGCATAAGCCCTTTT
1 ATAACTGGGGCAT-AGCCCTTTT
63151293 GCACTTCCTC
Statistics
Matches: 107, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
23 1 0.01
24 94 0.88
25 12 0.11
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (23 bp):
ATAACTGGGGCATAGCCCTTTTA
Found at i:63151293 original size:24 final size:24
Alignment explanation
Indices: 63151169--63151292 Score: 203
Period size: 24 Copynumber: 5.2 Consensus size: 24
63151159 GCCTAGCCTT
*
63151169 TTTTAATAACTGGGGCAAAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
63151193 TTTTAATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
63151217 TTTTAATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
* *
63151241 TTTTAGTAACTAGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
* *
63151265 TTTTGATAACTGAGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
63151289 TTTT
1 TTTT
63151293 GCACTTCCTC
Statistics
Matches: 93, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 93 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (24 bp):
TTTTAATAACTGGGGCATAAGCCC
Found at i:63151367 original size:20 final size:20
Alignment explanation
Indices: 63151342--63151408 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
63151332 TTATGAATAC
63151342 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
63151362 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
63151382 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
63151402 ACCATGT
1 ATCATGT
63151409 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:63151373 original size:11 final size:11
Alignment explanation
Indices: 63151342--63151397 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
63151332 TTATGAATAC
63151342 ATCATGTGCAT
1 ATCATGTGCAT
*
63151353 ATCA--TACAT
1 ATCATGTGCAT
63151362 ATCATGTGCAT
1 ATCATGTGCAT
*
63151373 ATCA--TACAT
1 ATCATGTGCAT
*
63151382 GTCATGTGCAT
1 ATCATGTGCAT
63151393 ATCAT
1 ATCAT
63151398 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:63155638 original size:13 final size:13
Alignment explanation
Indices: 63155601--63155638 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
63155591 TTCTTGCAAT
63155601 TTAATTTAATTTA
1 TTAATTTAATTTA
*
63155614 TT-ATTATTATTTA
1 TTAATT-TAATTTA
63155627 TTAATTTAATTT
1 TTAATTTAATTT
63155639 TTTCTTTCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
12 3 0.14
13 15 0.71
14 3 0.14
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (13 bp):
TTAATTTAATTTA
Found at i:63158336 original size:77 final size:77
Alignment explanation
Indices: 63158201--63158353 Score: 252
Period size: 77 Copynumber: 2.0 Consensus size: 77
63158191 TTTCCCATTC
* * * *
63158201 GGTACAGTCGAGGTAATTCATTCCAAATTCGGCACTTTTAATGTAAACAACACTCGTCTAAAACC
1 GGTACAGTCGAGGTAAGTCATCCCAAATTCGGCACTTTTAAGGTAAACAACACCCGTCTAAAACC
63158266 TTATTTTGATAT
66 TTATTTTGATAT
* *
63158278 GGTACAGTCGAGGTAAGTCATCCCAAGTTCGGCACTTTTAAGGTAAACAGCACCCGTCTAAAACC
1 GGTACAGTCGAGGTAAGTCATCCCAAATTCGGCACTTTTAAGGTAAACAACACCCGTCTAAAACC
63158343 TTATTTTGATA
66 TTATTTTGATA
63158354 AGAATGATAG
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
77 70 1.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (77 bp):
GGTACAGTCGAGGTAAGTCATCCCAAATTCGGCACTTTTAAGGTAAACAACACCCGTCTAAAACC
TTATTTTGATAT
Found at i:63161393 original size:16 final size:16
Alignment explanation
Indices: 63161374--63161405 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
63161364 ATTAGGGTGA
63161374 AACCTAATAAGGGGAT
1 AACCTAATAAGGGGAT
63161390 AACCTAATAAGGGGAT
1 AACCTAATAAGGGGAT
63161406 CCATAGATCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.12, G:0.25, T:0.19
Consensus pattern (16 bp):
AACCTAATAAGGGGAT
Found at i:63183813 original size:8 final size:8
Alignment explanation
Indices: 63183800--63183824 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
63183790 CTAGGGTTTT
63183800 TTTCAAGC
1 TTTCAAGC
63183808 TTTCAAGC
1 TTTCAAGC
63183816 TTTCAAGC
1 TTTCAAGC
63183824 T
1 T
63183825 CAATACTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.40
Consensus pattern (8 bp):
TTTCAAGC
Found at i:63189164 original size:37 final size:37
Alignment explanation
Indices: 63189114--63189190 Score: 136
Period size: 37 Copynumber: 2.1 Consensus size: 37
63189104 TGAATTATTG
*
63189114 AAGGATTATGAGCTAATGATTGATTATCATCTGGGAA
1 AAGGATTATGAGCTAATGATTGATTATCATCCGGGAA
*
63189151 AAGGATTATGAGCTAGTGATTGATTATCATCCGGGAA
1 AAGGATTATGAGCTAATGATTGATTATCATCCGGGAA
63189188 AAG
1 AAG
63189191 CAAATGTAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.35, C:0.09, G:0.26, T:0.30
Consensus pattern (37 bp):
AAGGATTATGAGCTAATGATTGATTATCATCCGGGAA
Found at i:63198113 original size:27 final size:26
Alignment explanation
Indices: 63198069--63198120 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
63198059 CTCGTTGCAA
*
63198069 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
63198096 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
63198121 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:63199608 original size:46 final size:46
Alignment explanation
Indices: 63199479--63199693 Score: 154
Period size: 46 Copynumber: 4.6 Consensus size: 46
63199469 GTACCGATGC
* * * ** * * *
63199479 CATGTCCCAGACA-AGTTTTACACTGGCTCATATCTCAAGTCGATGC
1 CATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGAGCCGA-GA
* *
63199525 CATGTCCCAGACATGGTCTTACACTGAC-TATCATCTCGTAGCCGAGA
1 CATGTCCCAGACATGGTCTTACACTGGCTTA-CGTCTCG-AGCCGAGA
* *
63199572 CATGTCCCAAACAT-GTCTTACACTGGCTTACGTCTCGAGCCCG-GTG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGAG-CCGAG-A
* * * * * *
63199618 CATGTCCTAGACAT-GTCTTACACTAGCTCT-TGTCTCAATGTCGATGC
1 CATGTCCCAGACATGGTCTTACACTGGCT-TACGTCTCGA-GCCGA-GA
63199665 CATGTCCCAGACATGGTCTTACACTGGCT
1 CATGTCCCAGACATGGTCTTACACTGGCT
63199694 CACACTCAAA
Statistics
Matches: 137, Mismatches: 21, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
45 3 0.02
46 68 0.50
47 47 0.34
48 19 0.14
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGAGCCGAGA
Found at i:63206352 original size:15 final size:15
Alignment explanation
Indices: 63206332--63206382 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
63206322 ACCGTGTGTT
63206332 ACACACGGCCGAGAC
1 ACACACGGCCGAGAC
* *
63206347 ACACAC--CCGTGTGTC
1 ACACACGGCC--GAGAC
63206362 ACACACGGCCGAGAC
1 ACACACGGCCGAGAC
63206377 ACACAC
1 ACACAC
63206383 CTGTGTGTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
13 2 0.07
15 24 0.86
17 2 0.07
ACGTcount: A:0.31, C:0.41, G:0.22, T:0.06
Consensus pattern (15 bp):
ACACACGGCCGAGAC
Found at i:63206357 original size:30 final size:30
Alignment explanation
Indices: 63206323--63206391 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
63206313 ATGGGGAATA
*
63206323 CCGTGTGTTACACACGGCCGAGACACACAC
1 CCGTGTGTCACACACGGCCGAGACACACAC
63206353 CCGTGTGTCACACACGGCCGAGACACACAC
1 CCGTGTGTCACACACGGCCGAGACACACAC
*
63206383 CTGTGTGTC
1 CCGTGTGTC
63206392 TACCCGTGTG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.23, C:0.36, G:0.25, T:0.16
Consensus pattern (30 bp):
CCGTGTGTCACACACGGCCGAGACACACAC
Found at i:63207160 original size:46 final size:47
Alignment explanation
Indices: 63207089--63207318 Score: 210
Period size: 46 Copynumber: 5.0 Consensus size: 47
63207079 GGTAAGGTGC
* *
63207089 CGATGCCATGTCCTAGACATGGTCTTACATTGGCTCAT-ATCTCAAGT
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCATCTCAAGT
* * *
63207136 CGATGCCA-GTCCCAGACATCGTCTTACACTGACT-ATCATCTCGTAGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCATCTC-AAGT
* * * *
63207183 CGATG-CATGTCCCAGACATGTCTTACACTGGCTTA-CGTCTCGAGG
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCAAGT
* * *
63207228 CTGATG-CATGTCCCAGACATGTCTTGCATTAGG-TC-TCGTCTCAATGT
1 C-GATGCCATGTCCCAGACATGTCTTACACT-GGCTCATCATCTCAA-GT
*
63207275 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCA-CA-CTCAA
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCATCTCAA
63207319 ATGACCCAAA
Statistics
Matches: 152, Mismatches: 19, Indels: 24
0.78 0.10 0.12
Matches are distributed among these distances:
45 5 0.03
46 85 0.56
47 51 0.34
48 11 0.07
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCAAGT
Found at i:63214020 original size:23 final size:22
Alignment explanation
Indices: 63213968--63214020 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
63213958 TCCACGTCTT
*
63213968 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
63213990 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
63214013 TTTCTTTT
1 TTTCTTTT
63214021 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:63222203 original size:20 final size:21
Alignment explanation
Indices: 63222175--63222214 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
63222165 ACAGCACTTA
63222175 TTTTCTATTAA-TTTCAGAAT
1 TTTTCTATTAATTTTCAGAAT
*
63222195 TTTTTTATTAATTTTCAGAA
1 TTTTCTATTAATTTTCAGAA
63222215 CTTTACATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.57
Consensus pattern (21 bp):
TTTTCTATTAATTTTCAGAAT
Found at i:63258760 original size:24 final size:24
Alignment explanation
Indices: 63258728--63258778 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
63258718 GCTGAATAAA
63258728 ATATGGAATTAAATCTTATTGAGT
1 ATATGGAATTAAATCTTATTGAGT
63258752 ATATGGAATTAAATCTTATTGAGT
1 ATATGGAATTAAATCTTATTGAGT
63258776 ATA
1 ATA
63258779 GTTTCTTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.39, C:0.04, G:0.16, T:0.41
Consensus pattern (24 bp):
ATATGGAATTAAATCTTATTGAGT
Found at i:63267655 original size:15 final size:15
Alignment explanation
Indices: 63267637--63267665 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
63267627 ATATTTATAA
63267637 AATTATTATTATTAT
1 AATTATTATTATTAT
63267652 AATTATTATTATTA
1 AATTATTATTATTA
63267666 GATAGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTATTATTATTAT
Found at i:63268260 original size:25 final size:25
Alignment explanation
Indices: 63268231--63268280 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
63268221 TGCTGCACGT
63268231 GGGGAAGGTATTTGAACTGGACCGA
1 GGGGAAGGTATTTGAACTGGACCGA
63268256 GGGGAAGGTATTTGAACTGGACCGA
1 GGGGAAGGTATTTGAACTGGACCGA
63268281 AACACCCAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.12, G:0.40, T:0.20
Consensus pattern (25 bp):
GGGGAAGGTATTTGAACTGGACCGA
Found at i:63269460 original size:16 final size:16
Alignment explanation
Indices: 63269435--63269472 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
63269425 CTAGATCGAT
63269435 AAAAGCTGAAAAGCCA
1 AAAAGCTGAAAAGCCA
* *
63269451 AAAAGTTGAAAAGCCG
1 AAAAGCTGAAAAGCCA
63269467 AAAAGC
1 AAAAGC
63269473 AGGTATTTGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.55, C:0.16, G:0.21, T:0.08
Consensus pattern (16 bp):
AAAAGCTGAAAAGCCA
Found at i:63270130 original size:20 final size:21
Alignment explanation
Indices: 63270085--63270130 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
63270075 ACTGTTCTGT
63270085 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
* *
63270105 -ACGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
63270124 TATGGGC
1 TATGGGC
63270131 AAGGCCCAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 4
0.75 0.11 0.14
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:63270223 original size:60 final size:60
Alignment explanation
Indices: 63270121--63270261 Score: 162
Period size: 60 Copynumber: 2.3 Consensus size: 60
63270111 CCAACTGTGT
* * *
63270121 TAATATGGGCAAGGCCCAATATATCTAGACTTGTAATAGGGCTACGGCCCAGATTGATAC
1 TAATATGGGCTAGGCCCAGTATATCTAGACTTGTAATAGGGCTACGGCCCAGATTAATAC
* * *
63270181 TAATATGGGCTAGGCCCAGTATACTCT-GTTAC-TGTAA-GGGGCTATGGCCCAGATTAATAT
1 TAATATGGGCTAGGCCCAGTATA-TCTAG--ACTTGTAATAGGGCTACGGCCCAGATTAATAC
*
63270241 TGATATGGGCTAAGGCCCAGT
1 TAATATGGGCT-AGGCCCAGT
63270262 TAACACTAAA
Statistics
Matches: 70, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
60 51 0.73
61 17 0.24
62 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (60 bp):
TAATATGGGCTAGGCCCAGTATATCTAGACTTGTAATAGGGCTACGGCCCAGATTAATAC
Found at i:63271376 original size:53 final size:54
Alignment explanation
Indices: 63271168--63271375 Score: 226
Period size: 55 Copynumber: 3.9 Consensus size: 54
63271158 TTGGTAAGAT
* * *
63271168 AAGGATATCATGTAAGACCATGCCAA-AGCATGGCATTAATAAGTCCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGA-CATGGCATTGATAAGTTCTATAAGGC
* * * *
63271222 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGC
* * *
63271277 AAAGG-TTCCATGTAAGACCATGCCAATG-CATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAA-GACATGGCATTGATAAGTTCTATAAGGC
* * * *
63271330 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
63271376 AAAAAGGAAA
Statistics
Matches: 133, Mismatches: 15, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
52 5 0.04
53 41 0.31
54 39 0.29
55 43 0.32
56 5 0.04
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:63271511 original size:17 final size:16
Alignment explanation
Indices: 63271478--63271511 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
63271468 CTTATTTAAT
*
63271478 ATTGAGATTGTAAGTA
1 ATTGAGATTATAAGTA
63271494 ATTGAGATTATCAAGTA
1 ATTGAGATTAT-AAGTA
63271511 A
1 A
63271512 GTGATGAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.35
Consensus pattern (16 bp):
ATTGAGATTATAAGTA
Found at i:63278270 original size:48 final size:48
Alignment explanation
Indices: 63278205--63278471 Score: 192
Period size: 48 Copynumber: 5.6 Consensus size: 48
63278195 CAAGGTAGGG
* * * ** * *
63278205 TGCCAATGTCATATCCCAGATATGGTCTTACATATGACCACATAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAATCA
*
63278253 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACA-CAT-A
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAATCA
* * * * *
63278299 T-CGAAT-CCGATAG-CCCAG-CTATGGTCTTACACGATG-TCTCATTATCA
1 TGCCAATGCC-AT-GTCCCAGAC-ATGGTCTTACATG-GGATCACATAATCA
*
63278346 TGCCAATGCCATGTCCCGGACATGGTCTTACATGGGATCACATAA-CGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAATC-A
** * * * * * *
63278394 TGAAAAAGTCATGTCCCAAACATGGCCTTACATGCGATCACAT-GTCA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAATCA
* * *
63278441 CTGCCGATGCCATATCCCAGATATGGTCTTA
1 -TGCCAATGCCATGTCCCAGACATGGTCTTA
63278472 TACGGGAGCT
Statistics
Matches: 169, Mismatches: 36, Indels: 28
0.73 0.15 0.12
Matches are distributed among these distances:
44 3 0.02
45 27 0.16
46 6 0.04
47 8 0.05
48 122 0.72
49 3 0.02
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAATCA
Found at i:63288895 original size:48 final size:48
Alignment explanation
Indices: 63288828--63289867 Score: 1727
Period size: 48 Copynumber: 21.8 Consensus size: 48
63288818 GGGTGTCAAT
* * * * * *
63288828 GCCATATCCCAGATATGGTCTTACATGGGACCACATAATGATGCCAAT
1 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
** * *
63288876 GCCATGTCCTGAACATGGTCTTACATGGGATCACACATA--TTG---AA
1 GCCATGTCCCAAACATGGTCTTACATGGGATCACATA-ACGATGCCAAA
* *** * * * * * *
63288920 GCTGATAG-CCCAGTTATGGTCTTACACGATG-TCTCATTATGATGCCAAT
1 GC-CAT-GTCCCAAACATGGTCTTACATG-GGATCACATAACGATGCCAAA
* *
63288969 G-CATGTCTCAGACATGGTCTTACATGGGATCACATAACGATGCCAAA
1 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
63289016 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
1 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
63289064 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
1 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
63289112 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
1 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
63289160 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
1 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
63289208 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
1 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
63289256 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
1 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
63289304 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
1 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
63289352 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
1 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
63289400 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
1 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
63289448 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
1 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
63289496 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
1 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
63289544 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
1 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
63289592 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
1 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
63289640 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
1 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
63289688 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
1 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
*
63289736 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCTAAA
1 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
** *
63289784 TTCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCTAAA
1 GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
** *
63289832 TTCATGTCCCAAACATGGTCTTACATGCGATCACAT
1 GCCATGTCCCAAACATGGTCTTACATGGGATCACAT
63289868 GTCATTGCCG
Statistics
Matches: 942, Mismatches: 38, Indels: 24
0.94 0.04 0.02
Matches are distributed among these distances:
44 4 0.00
45 20 0.02
46 6 0.01
47 35 0.04
48 874 0.93
49 3 0.00
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (48 bp):
GCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGCCAAA
Found at i:63293034 original size:55 final size:56
Alignment explanation
Indices: 63292931--63293065 Score: 236
Period size: 55 Copynumber: 2.4 Consensus size: 56
63292921 TCCCAGACAA
*
63292931 GGTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTATAAAACGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATAAAACGT
* *
63292987 GGTCTTACTCGCACACATATAT-TGAATCACATATCGATGCCAACGTATAAAATGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATAAAACGT
63293042 GGTCTTACTCGCACACATATATCG
1 GGTCTTACTCGCACACATATATCG
63293066 ATGCCATGGT
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
55 52 0.70
56 22 0.30
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.27
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATAAAACGT
Found at i:63293702 original size:15 final size:15
Alignment explanation
Indices: 63293679--63293709 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
63293669 TCAAAAATTC
63293679 CAATACAAAACATAT
1 CAATACAAAACATAT
*
63293694 CAATCCAAAACATAT
1 CAATACAAAACATAT
63293709 C
1 C
63293710 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:63294242 original size:14 final size:15
Alignment explanation
Indices: 63294225--63294253 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
63294215 ACACAAAAAT
63294225 TTCACACAT-ATAAA
1 TTCACACATAATAAA
63294239 TTCACACATAATAAA
1 TTCACACATAATAAA
63294254 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:63296167 original size:16 final size:16
Alignment explanation
Indices: 63296138--63296171 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
63296128 AAAATTCAAT
*
63296138 TATCATATACTTATTC
1 TATCAAATACTTATTC
*
63296154 TATCAAATATTTATTC
1 TATCAAATACTTATTC
63296170 TA
1 TA
63296172 ATATATTGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50
Consensus pattern (16 bp):
TATCAAATACTTATTC
Found at i:63296632 original size:34 final size:34
Alignment explanation
Indices: 63296590--63296663 Score: 114
Period size: 34 Copynumber: 2.2 Consensus size: 34
63296580 CGCCACGTGC
* *
63296590 ACCA-ACCTCCATTTGCGTGTGCTGAACCGCCAT
1 ACCACACCTCCATCTGCGTGTGCGGAACCGCCAT
63296623 ACCACACCTCCATCTGCGTGTGCGGAACCGCCAT
1 ACCACACCTCCATCTGCGTGTGCGGAACCGCCAT
*
63296657 TCCACAC
1 ACCACAC
63296664 AATCACAGCC
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
33 4 0.11
34 33 0.89
ACGTcount: A:0.22, C:0.41, G:0.18, T:0.20
Consensus pattern (34 bp):
ACCACACCTCCATCTGCGTGTGCGGAACCGCCAT
Found at i:63300521 original size:31 final size:31
Alignment explanation
Indices: 63300486--63300548 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
63300476 CTTTAATTAA
*
63300486 ATGTATGAA-ATTGAATCAAAATTAAAGTTTC
1 ATGTATGAATA-TAAATCAAAATTAAAGTTTC
* *
63300517 ATGTATGTATATAAATCAAAATTCAAGTTTC
1 ATGTATGAATATAAATCAAAATTAAAGTTTC
63300548 A
1 A
63300549 AGTACATAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 27 0.96
32 1 0.04
ACGTcount: A:0.44, C:0.08, G:0.11, T:0.37
Consensus pattern (31 bp):
ATGTATGAATATAAATCAAAATTAAAGTTTC
Found at i:63302588 original size:27 final size:27
Alignment explanation
Indices: 63302557--63302611 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
63302547 CAAGAATTGA
*
63302557 GTCAAAAAGCCAATATATGAGGAAAAG
1 GTCAAAAAGCAAATATATGAGGAAAAG
63302584 GTCAAAAAGCAAATATATGAGGAAAAG
1 GTCAAAAAGCAAATATATGAGGAAAAG
63302611 G
1 G
63302612 GAAAATTGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.53, C:0.09, G:0.24, T:0.15
Consensus pattern (27 bp):
GTCAAAAAGCAAATATATGAGGAAAAG
Found at i:63303038 original size:20 final size:20
Alignment explanation
Indices: 63302993--63303040 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
63302983 GCTTGTACGG
* *
63302993 GATTGCACTTCGGTGCATTT
1 GATTGCACTTAGGTGCATCT
* *
63303013 GTTTGCACTTAGGTGCCTCT
1 GATTGCACTTAGGTGCATCT
63303033 GATTGCAC
1 GATTGCAC
63303041 ATGTTCCTCT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.15, C:0.23, G:0.25, T:0.38
Consensus pattern (20 bp):
GATTGCACTTAGGTGCATCT
Found at i:63309620 original size:46 final size:46
Alignment explanation
Indices: 63309243--63309601 Score: 675
Period size: 46 Copynumber: 7.8 Consensus size: 46
63309233 TGTAACCCGC
* * *
63309243 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
63309289 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
63309335 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
63309381 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
63309427 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
63309473 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
63309519 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
63309565 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
63309602 TGCTCAATCA
Statistics
Matches: 309, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
45 2 0.01
46 307 0.99
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:63311541 original size:20 final size:21
Alignment explanation
Indices: 63311502--63311541 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
63311492 AAATTAATGG
63311502 CTACACGGGCGTGTTGCCCTT
1 CTACACGGGCGTGTTGCCCTT
*
63311523 CTACACGGGTGTG-TGCCCT
1 CTACACGGGCGTGTTGCCCT
63311542 ATTCCAGAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.33, G:0.30, T:0.28
Consensus pattern (21 bp):
CTACACGGGCGTGTTGCCCTT
Found at i:63313378 original size:20 final size:20
Alignment explanation
Indices: 63313355--63313401 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
63313345 GGTAAAGATA
63313355 AGCTAAAAACGTGCTCATTG
1 AGCTAAAAACGTGCTCATTG
*
63313375 AGCTGAAAACGTGCTCATTG
1 AGCTAAAAACGTGCTCATTG
63313395 AGCTAAA
1 AGCTAAA
63313402 CAAACTGGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.23
Consensus pattern (20 bp):
AGCTAAAAACGTGCTCATTG
Found at i:63315492 original size:27 final size:27
Alignment explanation
Indices: 63315461--63315638 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
63315451 TAAATTGTAC
63315461 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
63315488 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63315514 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
63315542 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
63315570 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63315597 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
63315624 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63315639 GACTCGATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:63315575 original size:82 final size:81
Alignment explanation
Indices: 63315462--63315617 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
63315452 AAATTGTACA
*
63315462 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
63315526 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
63315543 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
63315608 TGCGAGTTGA
65 TGCGAATTGA
63315618 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:63315629 original size:82 final size:81
Alignment explanation
Indices: 63315458--63315638 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
63315448 GATTAAATTG
*
63315458 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
63315523 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
63315539 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
63315603 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
63315621 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
63315639 GACTCGATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:63317672 original size:13 final size:13
Alignment explanation
Indices: 63317654--63317682 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
63317644 GATCACCTTT
63317654 TCGAGATTGATTC
1 TCGAGATTGATTC
63317667 TCGAGATTGATTC
1 TCGAGATTGATTC
63317680 TCG
1 TCG
63317683 GTGGACTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.21, C:0.17, G:0.24, T:0.38
Consensus pattern (13 bp):
TCGAGATTGATTC
Found at i:63317887 original size:20 final size:20
Alignment explanation
Indices: 63317856--63317910 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
63317846 AGCTCTGTCC
63317856 AGCTCAAATCCAGCTTATTCG
1 AGCTC-AATCCAGCTTATTCG
* * *
63317877 AGCTCAATCCAACTTGTTTG
1 AGCTCAATCCAGCTTATTCG
* *
63317897 AGCTAAATCGAGCT
1 AGCTCAATCCAGCT
63317911 CACTCCTAGC
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 23 0.82
21 5 0.18
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (20 bp):
AGCTCAATCCAGCTTATTCG
Found at i:63318648 original size:30 final size:29
Alignment explanation
Indices: 63318612--63318770 Score: 140
Period size: 30 Copynumber: 5.3 Consensus size: 29
63318602 CGAGCTCACT
63318612 CCTAGCTCATA-TTCAGCTCACGAGCTAAA
1 CCTAGCTCA-ACTTCAGCTCACGAGCTAAA
* * * *
63318641 CCATAGCTCAACTTCAGCTTAGGAGTTTAA
1 CC-TAGCTCAACTTCAGCTCACGAGCTAAA
* *
63318671 TCTCAGCTCAACTTTAGCTCACGAGCTAAA
1 CCT-AGCTCAACTTCAGCTCACGAGCTAAA
* * * *
63318701 CCATAGCTCAACTTCAGCTTAGGAGTTTAA
1 CC-TAGCTCAACTTCAGCTCACGAGCTAAA
* *
63318731 TCTCAGCTCAACTTTAGCTCACGAGCTAAA
1 CCT-AGCTCAACTTCAGCTCACGAGCTAAA
*
63318761 GCTTAGCTCA
1 -CCTAGCTCA
63318771 TTTTAGTTTA
Statistics
Matches: 100, Mismatches: 24, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
29 5 0.05
30 93 0.93
31 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (29 bp):
CCTAGCTCAACTTCAGCTCACGAGCTAAA
Found at i:63318692 original size:60 final size:60
Alignment explanation
Indices: 63318626--63318770 Score: 272
Period size: 60 Copynumber: 2.4 Consensus size: 60
63318616 GCTCATATTC
63318626 AGCTCACGAGCTAAACCATAGCTCAACTTCAGCTTAGGAGTTTAATCTCAGCTCAACTTT
1 AGCTCACGAGCTAAACCATAGCTCAACTTCAGCTTAGGAGTTTAATCTCAGCTCAACTTT
63318686 AGCTCACGAGCTAAACCATAGCTCAACTTCAGCTTAGGAGTTTAATCTCAGCTCAACTTT
1 AGCTCACGAGCTAAACCATAGCTCAACTTCAGCTTAGGAGTTTAATCTCAGCTCAACTTT
* *
63318746 AGCTCACGAGCTAAAGCTTAGCTCA
1 AGCTCACGAGCTAAACCATAGCTCA
63318771 TTTTAGTTTA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 83 1.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (60 bp):
AGCTCACGAGCTAAACCATAGCTCAACTTCAGCTTAGGAGTTTAATCTCAGCTCAACTTT
Found at i:63320422 original size:10 final size:11
Alignment explanation
Indices: 63320407--63320447 Score: 57
Period size: 12 Copynumber: 3.6 Consensus size: 11
63320397 ATACTAGTAT
63320407 AAAAAAA-TTC
1 AAAAAAATTTC
63320417 AAAAAAATTTC
1 AAAAAAATTTC
63320428 AAAAAAAAGTTTC
1 -AAAAAAA-TTTC
63320441 AAAAAAA
1 AAAAAAA
63320448 AATATTTGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 7 0.25
11 3 0.11
12 14 0.50
13 4 0.14
ACGTcount: A:0.71, C:0.07, G:0.02, T:0.20
Consensus pattern (11 bp):
AAAAAAATTTC
Found at i:63320423 original size:11 final size:11
Alignment explanation
Indices: 63320407--63320448 Score: 57
Period size: 11 Copynumber: 3.6 Consensus size: 11
63320397 ATACTAGTAT
63320407 AAAAAAATTCA
1 AAAAAAATTCA
*
63320418 AAAAAATTTCA
1 AAAAAAATTCA
63320429 AAAAAAAGTTTCA
1 AAAAAAA--TTCA
63320442 AAAAAAA
1 AAAAAAA
63320449 ATATTTGTGC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
11 16 0.59
13 11 0.41
ACGTcount: A:0.71, C:0.07, G:0.02, T:0.19
Consensus pattern (11 bp):
AAAAAAATTCA
Found at i:63320433 original size:13 final size:13
Alignment explanation
Indices: 63320417--63320450 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
63320407 AAAAAAATTC
63320417 AAAAAAATTTCAA
1 AAAAAAATTTCAA
*
63320430 AAAAAAGTTTCAA
1 AAAAAAATTTCAA
63320443 AAAAAAAT
1 AAAAAAAT
63320451 ATTTGTGCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.71, C:0.06, G:0.03, T:0.21
Consensus pattern (13 bp):
AAAAAAATTTCAA
Found at i:63324108 original size:27 final size:27
Alignment explanation
Indices: 63324077--63324254 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
63324067 TAAATTGTAC
63324077 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
63324104 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63324130 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
63324158 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
63324186 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63324213 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
63324240 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63324255 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:63324191 original size:82 final size:81
Alignment explanation
Indices: 63324078--63324233 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
63324068 AAATTGTACA
* *
63324078 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
63324142 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
63324159 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
63324224 TGCGAGTTGA
65 TGCGAATTGA
63324234 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:63324245 original size:82 final size:81
Alignment explanation
Indices: 63324074--63324254 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
63324064 GATTAAATTG
* *
63324074 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
63324139 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
63324155 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
63324219 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
63324237 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
63324255 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:63329457 original size:20 final size:21
Alignment explanation
Indices: 63329428--63329474 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
63329418 AAGGTAAAGA
* * *
63329428 TGAGCGAAAACCGAGCT-CAT
1 TGAGCTAAAAACGAGCTGAAT
63329448 TGAGCTAAAAACGAGCTGAAT
1 TGAGCTAAAAACGAGCTGAAT
63329469 TGAGCT
1 TGAGCT
63329475 CAACAAACTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.36, C:0.19, G:0.26, T:0.19
Consensus pattern (21 bp):
TGAGCTAAAAACGAGCTGAAT
Found at i:63331050 original size:21 final size:20
Alignment explanation
Indices: 63331018--63331060 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
63331008 TTTTCCATGA
63331018 TTAGATTCAA-TTGTTATATG
1 TTAGATTCAATTTG-TATATG
*
63331038 TTAGCATTTAATTTGTATATG
1 TTAG-ATTCAATTTGTATATG
63331059 TT
1 TT
63331061 TTTCTATTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 13 0.65
22 3 0.15
ACGTcount: A:0.28, C:0.05, G:0.14, T:0.53
Consensus pattern (20 bp):
TTAGATTCAATTTGTATATG
Found at i:63332689 original size:3 final size:3
Alignment explanation
Indices: 63332681--63332706 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
63332671 AAACAGTAGA
63332681 GCG GCG GCG GCG GCG GCG GCG GCG GC
1 GCG GCG GCG GCG GCG GCG GCG GCG GC
63332707 ATCCCCCCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.35, G:0.65, T:0.00
Consensus pattern (3 bp):
GCG
Done.