Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 187 of 235
Found at i:63733447 original size:45 final size:45
Alignment explanation
Indices: 63733354--63733472 Score: 123
Period size: 45 Copynumber: 2.6 Consensus size: 45
63733344 AAAATTTGAT
* * *
63733354 CTGCTCCGCTCCTGCTCAGCGAAGATAAGATCCGCTGTATCTGAC
1 CTGCTCCACTCCTGCTCAGCGAAGATAAGATCCGATATATCTGAC
* * * * *
63733399 CTGCTCCACTCTTGTTCAGCGGAGATAAGATCTGATATAT-TTAGC
1 CTGCTCCACTCCTGCTCAGCGAAGATAAGATCCGATATATCTGA-C
* * *
63733444 CTGCTTCACTCCTACTCAGTGAAGATAAG
1 CTGCTCCACTCCTGCTCAGCGAAGATAAG
63733473 TCTGATGATT
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
44 2 0.03
45 57 0.97
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (45 bp):
CTGCTCCACTCCTGCTCAGCGAAGATAAGATCCGATATATCTGAC
Found at i:63733591 original size:45 final size:45
Alignment explanation
Indices: 63733533--63733877 Score: 181
Period size: 45 Copynumber: 7.7 Consensus size: 45
63733523 CAAAATTCGA
* * *
63733533 TCTGCTCCGCTCCTGCTCAGCGAAGATAAGATCTGCTATATTTAG
1 TCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGCTATATTTAG
* * *
63733578 CCTGCTTCACTCCTACTCAGTGAAGATAAG-GCTG--ATGA-TTAG
1 TCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGCTAT-ATTTAG
* * * * * *
63733620 AATCTGCTCCATTGCC-GATACA-TGGAGATAAGA-CTCGCCACAATTT-G
1 --TCTGCTTCACT-CCTGCT-CAGTGAAGATAAGATCT-GCTA-TATTTAG
* * * *
63733667 ATCTGCTTCACTCCTGCTCAGTGAAGAAAAGATCGGGTATGTTTAG
1 -TCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGCTATATTTAG
* * * * * * *** ** *
63733713 CCTACTCCACTCCTGCTCCGTGAAGATAAG-GCTGGTGGCTGAAA
1 TCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGCTATATTTAG
* * *
63733757 TCTGCTTCACTCCTACTCAGTGAAGATAAGA-CTCGCCAAAATTT-G
1 TCTGCTTCACTCCTGCTCAGTGAAGATAAGATCT-G-CTATATTTAG
* * * *
63733802 ATCTGCTTCACTCCTGCTTAGTGAAGATAAGATCGGGTATGTTTAG
1 -TCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGCTATATTTAG
* *
63733848 CCTGCTCCACTCCTGCTCAGTGAAGATAAG
1 TCTGCTTCACTCCTGCTCAGTGAAGATAAG
63733878 GCTGATGATA
Statistics
Matches: 220, Mismatches: 59, Indels: 42
0.69 0.18 0.13
Matches are distributed among these distances:
42 6 0.03
43 1 0.00
44 56 0.25
45 94 0.43
46 56 0.25
47 5 0.02
48 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (45 bp):
TCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGCTATATTTAG
Found at i:63733593 original size:135 final size:134
Alignment explanation
Indices: 63733399--63733886 Score: 573
Period size: 135 Copynumber: 3.6 Consensus size: 134
63733389 TGTATCTGAC
* * * * * *
63733399 CTGCTCCACTCTTGTTCAGCGGAGATAAGATCTGATATATTTAGCCTGCTTCACTCCTACTCAGT
1 CTGCTCCACTCCTGCTCAGCGAAGATAAGATCGGGTATATTTAGCCTGCTCCACTCCTACTCAGT
* * *
63733464 GAAGATAAGTCTGATGATTGGAATCTGCTCCATCGTTAGTACAGGGAGATAAGATTCACCAAAAT
66 GAAGATAAGGCTGATGATTGGAATCTGCTCCATCG-TAGTACAGGGAGATAAGACTCGCCAAAAT
*
63733529 TCGAT
130 TTGAT
* * * *
63733534 CTGCTCCGCTCCTGCTCAGCGAAGATAAGATCTGCTATATTTAGCCTGCTTCACTCCTACTCAGT
1 CTGCTCCACTCCTGCTCAGCGAAGATAAGATCGGGTATATTTAGCCTGCTCCACTCCTACTCAGT
* * ** * *
63733599 GAAGATAAGGCTGATGATTAGAATCTGCTCCATTGCCGATACATGGAGATAAGACTCGCCACAAT
66 GAAGATAAGGCTGATGATTGGAATCTGCTCCATCGTAG-TACAGGGAGATAAGACTCGCCAAAAT
63733664 TTGAT
130 TTGAT
* * * * * * *
63733669 CTGCTTCACTCCTGCTCAGTGAAGAAAAGATCGGGTATGTTTAGCCTACTCCACTCCTGCTCCGT
1 CTGCTCCACTCCTGCTCAGCGAAGATAAGATCGGGTATATTTAGCCTGCTCCACTCCTACTCAGT
* ** * * * * *
63733734 GAAGATAAGGCTGGTGGCTGAAATCTGCTTCACTCCTACT-CAGTGAAGATAAGACTCGCCAAAA
66 GAAGATAAGGCTGATGATTGGAATCTGCTCCA-TCGTAGTACAG-GGAGATAAGACTCGCCAAAA
63733798 TTTGAT
129 TTTGAT
* * * * *
63733804 CTGCTTCACTCCTGCTTAGTGAAGATAAGATCGGGTATGTTTAGCCTGCTCCACTCCTGCTCAGT
1 CTGCTCCACTCCTGCTCAGCGAAGATAAGATCGGGTATATTTAGCCTGCTCCACTCCTACTCAGT
63733869 GAAGATAAGGCTGATGAT
66 GAAGATAAGGCTGATGAT
63733887 ATCTATCTTT
Statistics
Matches: 303, Mismatches: 47, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
134 3 0.01
135 299 0.99
136 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (134 bp):
CTGCTCCACTCCTGCTCAGCGAAGATAAGATCGGGTATATTTAGCCTGCTCCACTCCTACTCAGT
GAAGATAAGGCTGATGATTGGAATCTGCTCCATCGTAGTACAGGGAGATAAGACTCGCCAAAATT
TGAT
Found at i:63762625 original size:225 final size:225
Alignment explanation
Indices: 63762234--63762683 Score: 812
Period size: 225 Copynumber: 2.0 Consensus size: 225
63762224 ATTGATGACA
63762234 TCTTGGTCTATTCAAGAGATGAGACCGAACATGCTGAGCACCTGAGATTAGTGTTGCAAATTTTA
1 TCTTGGTCTATTCAAGAGATGAGACCGAACATGCTGAGCACCTGAGATTAGTGTTGCAAATTTTA
63762299 CGGGATAAGCAGTTATATGCTAAGTTCAGTAAGTGTGAGTTCTGGTTAAGAGAGGTTAGCTTCTT
66 CGGGATAAGCAGTTATATGCTAAGTTCAGTAAGTGTGAGTTCTGGTTAAGAGAGGTTAGCTTCTT
* * * *
63762364 GGGTCACGTGGTATCCGCGTCGGGTATTCGAGTTGACCCGAA-CAAAATTTCAGCCATACTTGAC
131 GGGTCACGTGGTATCCGCATCGGGTATTCAAGTTGACCC-AAGCAAAAATTCAGCCATACTTAAC
* *
63762428 TGGAAAACTCCGAGAAATATTACTGAAGTTC
195 TGGAAAACTCCAAGAAATATTACCGAAGTTC
63762459 TCTTGGTCTATTCAAGAGATGAGACCGAACATGCTGAGCACCTGAGATTAGTGTTGCAAATTTTA
1 TCTTGGTCTATTCAAGAGATGAGACCGAACATGCTGAGCACCTGAGATTAGTGTTGCAAATTTTA
63762524 CGGGATAAGCAGTTATATGCTAAGTTCAGTAAGTGTGAGTTCTGGTTAAGAGAGGTTAGCTTCTT
66 CGGGATAAGCAGTTATATGCTAAGTTCAGTAAGTGTGAGTTCTGGTTAAGAGAGGTTAGCTTCTT
63762589 GGGTCACGTGGTATCCGCATCGGGTATTCAAGTTGACCCAAGCAAAAATTCAGCCATACTTAACT
131 GGGTCACGTGGTATCCGCATCGGGTATTCAAGTTGACCCAAGCAAAAATTCAGCCATACTTAACT
**
63762654 GGAAGCCTCCAAGAAATATTACCGAAGTTC
196 GGAAAACTCCAAGAAATATTACCGAAGTTC
63762684 GGAGCTTCCT
Statistics
Matches: 216, Mismatches: 8, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
224 2 0.01
225 214 0.99
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (225 bp):
TCTTGGTCTATTCAAGAGATGAGACCGAACATGCTGAGCACCTGAGATTAGTGTTGCAAATTTTA
CGGGATAAGCAGTTATATGCTAAGTTCAGTAAGTGTGAGTTCTGGTTAAGAGAGGTTAGCTTCTT
GGGTCACGTGGTATCCGCATCGGGTATTCAAGTTGACCCAAGCAAAAATTCAGCCATACTTAACT
GGAAAACTCCAAGAAATATTACCGAAGTTC
Found at i:63766517 original size:79 final size:81
Alignment explanation
Indices: 63766381--63766565 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
63766371 TTGAATGATG
*
63766381 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
63766445 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
63766460 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
63766522 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
63766540 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63766566 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:63766579 original size:40 final size:40
Alignment explanation
Indices: 63766382--63766565 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
63766372 TGAATGATGT
* * * *
63766382 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
63766422 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
63766462 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
63766500 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
63766541 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
63766566 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:63766587 original size:79 final size:79
Alignment explanation
Indices: 63766434--63766598 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
63766424 GGACTAAGAT
* **
63766434 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
63766499 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
63766513 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
63766576 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
63766592 CCGAAGG
1 CCGAAGG
63766599 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:63776567 original size:43 final size:42
Alignment explanation
Indices: 63776519--63776617 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 42
63776509 TCCCAAACGT
*
63776519 GGTCTTACATGTAATCAAACATCGATGCCACTGT-TCCAGACAG
1 GGTCTTACATGTAATCAAACA-CGATGCCAATGTCT-CAGACAG
* * * * *
63776562 GGTCTTACACGAAATCAGATACGATGCCAATGTCTCAGACAT
1 GGTCTTACATGTAATCAAACACGATGCCAATGTCTCAGACAG
63776604 GGTCTTACATGTAA
1 GGTCTTACATGTAA
63776618 AACAGAAGTC
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
42 29 0.62
43 18 0.38
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.26
Consensus pattern (42 bp):
GGTCTTACATGTAATCAAACACGATGCCAATGTCTCAGACAG
Found at i:63776601 original size:42 final size:44
Alignment explanation
Indices: 63776541--63776639 Score: 116
Period size: 42 Copynumber: 2.3 Consensus size: 44
63776531 AATCAAACAT
* *
63776541 CGATGCCACTGT-TCCAGACAGGGTCTTACACG-AAATCAGATA-
1 CGATGCCAATGTCTCCAGACAGGGTCTTACACGTAAAACAGA-AG
* *
63776583 CGATGCCAATGTCT-CAGACATGGTCTTACATGTAAAACAGAAG
1 CGATGCCAATGTCTCCAGACAGGGTCTTACACGTAAAACAGAAG
63776626 TCGATGCCAATGTC
1 -CGATGCCAATGTC
63776640 ATAGATGTGG
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
42 28 0.57
43 8 0.16
44 13 0.27
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.23
Consensus pattern (44 bp):
CGATGCCAATGTCTCCAGACAGGGTCTTACACGTAAAACAGAAG
Found at i:63776666 original size:44 final size:44
Alignment explanation
Indices: 63776540--63776667 Score: 104
Period size: 44 Copynumber: 3.0 Consensus size: 44
63776530 TAATCAAACA
* * * *
63776540 TCGATGCCACTGT-TCCAGACAGGGTCTTACAC-GAAATCAG-A-
1 TCGATGCCAATGTCT-CAGACATGGTCTTACACACAAAACAGAAG
***
63776581 TACGATGCCAATGTCTCAGACATGGTCTTACATGTAAAACAGAAG
1 T-CGATGCCAATGTCTCAGACATGGTCTTACACACAAAACAGAAG
** *
63776626 TCGATGCCAATGTCAT-AGATGTGGTCTTACACACAGAACAGA
1 TCGATGCCAATGTC-TCAGACATGGTCTTACACACAAAACAGA
63776668 TATCGAAAAT
Statistics
Matches: 70, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
41 1 0.01
42 26 0.37
43 7 0.10
44 34 0.49
45 2 0.03
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (44 bp):
TCGATGCCAATGTCTCAGACATGGTCTTACACACAAAACAGAAG
Found at i:63780958 original size:27 final size:26
Alignment explanation
Indices: 63780928--63781024 Score: 99
Period size: 27 Copynumber: 3.7 Consensus size: 26
63780918 AAATGTCCCT
*
63780928 TTTCACATATCTATATTCATATAAATA
1 TTTCATATATCTAT-TTCATATAAATA
* *
63780955 TTTCATATAAAC-ACTTCATATAACAT-
1 TTTCATAT-ATCTATTTCATATAA-ATA
* *
63780981 TTTCATAAATCTATTTCCATATAAAAA
1 TTTCATATATCTATTT-CATATAAATA
63781008 TTTCATATATCTATTTC
1 TTTCATATATCTATTTC
63781025 CATTTACTCA
Statistics
Matches: 57, Mismatches: 8, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
25 2 0.04
26 21 0.37
27 32 0.56
28 2 0.04
ACGTcount: A:0.39, C:0.16, G:0.00, T:0.44
Consensus pattern (26 bp):
TTTCATATATCTATTTCATATAAATA
Found at i:63780961 original size:13 final size:13
Alignment explanation
Indices: 63780943--63781016 Score: 71
Period size: 13 Copynumber: 5.6 Consensus size: 13
63780933 CATATCTATA
63780943 TTCATATAAATAT
1 TTCATATAAATAT
* *
63780956 TTCATATAAACAC
1 TTCATATAAATAT
63780969 TTCATATAACAT-T
1 TTCATATAA-ATAT
*
63780982 TTCATA-AATCTAT
1 TTCATATAA-ATAT
*
63780995 TTCCATATAAAAAT
1 TT-CATATAAATAT
63781009 TTCATATA
1 TTCATATA
63781017 TCTATTTCCA
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
12 3 0.06
13 35 0.71
14 9 0.18
15 2 0.04
ACGTcount: A:0.43, C:0.15, G:0.00, T:0.42
Consensus pattern (13 bp):
TTCATATAAATAT
Found at i:63780973 original size:26 final size:27
Alignment explanation
Indices: 63780943--63781016 Score: 82
Period size: 26 Copynumber: 2.8 Consensus size: 27
63780933 CATATCTATA
63780943 TTCATATAAATATTTCATATAAAC-AC
1 TTCATATAAATATTTCATATAAACTAC
* *
63780969 TTCATATAACAT-TTTCATA-AATCTAT
1 TTCATATAA-ATATTTCATATAAACTAC
*
63780995 TTCCATATAAAAATTTCATATA
1 TT-CATATAAATATTTCATATA
63781017 TCTATTTCCA
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
25 3 0.08
26 20 0.50
27 16 0.40
28 1 0.03
ACGTcount: A:0.43, C:0.15, G:0.00, T:0.42
Consensus pattern (27 bp):
TTCATATAAATATTTCATATAAACTAC
Found at i:63781023 original size:13 final size:13
Alignment explanation
Indices: 63780928--63781024 Score: 65
Period size: 13 Copynumber: 7.3 Consensus size: 13
63780918 AAATGTCCCT
* *
63780928 TTTCACATATCTA
1 TTTCATATAACTA
*
63780941 TATTCATATAAATA
1 T-TTCATATAACTA
63780955 TTTCATATAAAC-A
1 TTTCATAT-AACTA
*
63780968 CTTCATATAAC-A
1 TTTCATATAACTA
63780980 TTTTCATA-AATCTA
1 -TTTCATATAA-CTA
**
63780994 TTTCCATATAAAAA
1 TTT-CATATAACTA
*
63781008 TTTCATATATCTA
1 TTTCATATAACTA
63781021 TTTC
1 TTTC
63781025 CATTTACTCA
Statistics
Matches: 66, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
12 6 0.09
13 37 0.56
14 21 0.32
15 2 0.03
ACGTcount: A:0.39, C:0.16, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTCATATAACTA
Found at i:63781151 original size:25 final size:25
Alignment explanation
Indices: 63781105--63781152 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
63781095 AGCTGTGATG
* **
63781105 GTAAATGCTCTCACGATCTGTGACT
1 GTAAATGCTCACACGAGATGTGACT
*
63781130 GTAAATGCTCACATGAGATGTGA
1 GTAAATGCTCACACGAGATGTGA
63781153 AATGGGACTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (25 bp):
GTAAATGCTCACACGAGATGTGACT
Found at i:63786274 original size:13 final size:13
Alignment explanation
Indices: 63786256--63786286 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
63786246 TCCATTAGAA
63786256 CAAATTTTGACAT
1 CAAATTTTGACAT
63786269 CAAATTTTGACAT
1 CAAATTTTGACAT
63786282 CAAAT
1 CAAAT
63786287 CCTCCAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.42, C:0.16, G:0.06, T:0.35
Consensus pattern (13 bp):
CAAATTTTGACAT
Found at i:63792751 original size:19 final size:18
Alignment explanation
Indices: 63792727--63792762 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
63792717 ATGAACATGT
63792727 TGAATTTTAGTTAATTTTA
1 TGAATTTTAGTT-ATTTTA
*
63792746 TGAATTTTGGTTATTTT
1 TGAATTTTAGTTATTTT
63792763 CGACAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.25, C:0.00, G:0.14, T:0.61
Consensus pattern (18 bp):
TGAATTTTAGTTATTTTA
Found at i:63794794 original size:22 final size:21
Alignment explanation
Indices: 63794764--63794810 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
63794754 TATAAATTAA
63794764 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
63794786 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
63794807 ATCT
1 ATCT
63794811 AAGATTGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:63794804 original size:16 final size:16
Alignment explanation
Indices: 63794783--63794833 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 16
63794773 ATTACAAGAT
63794783 CATATCTTCAAGATTG
1 CATATCTTCAAGATTG
63794799 CATATCATATCTAAGATTG
1 CATATC-T-TC-AAGATTG
*
63794818 CATATACTTAAAGATT
1 CATAT-CTTCAAGATT
63794834 ATATTTCCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
16 6 0.20
17 7 0.23
18 3 0.10
19 13 0.43
20 1 0.03
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (16 bp):
CATATCTTCAAGATTG
Found at i:63794816 original size:19 final size:21
Alignment explanation
Indices: 63794781--63794822 Score: 70
Period size: 19 Copynumber: 2.1 Consensus size: 21
63794771 AGATTACAAG
63794781 ATCATATCTTCAAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
63794802 ATCATATC-T-AAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
63794821 AT
1 AT
63794823 ACTTAAAGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 12 0.57
20 1 0.05
21 8 0.38
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.38
Consensus pattern (21 bp):
ATCATATCTTCAAGATTGCAT
Found at i:63798388 original size:22 final size:21
Alignment explanation
Indices: 63798358--63798423 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
63798348 TACAAATTAA
63798358 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
63798380 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
63798401 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
63798420 ATCT
1 ATCT
63798424 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:63798410 original size:19 final size:19
Alignment explanation
Indices: 63798375--63798472 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
63798365 AGATTACAAG
63798375 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
63798396 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
63798415 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
63798432 ATCATATCTAAGATTGAAT
1 ATCATATCTAAGATTGCAT
63798451 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
63798470 ATC
1 ATC
63798473 CTTAAAGATT
Statistics
Matches: 74, Mismatches: 1, Indels: 6
0.91 0.01 0.07
Matches are distributed among these distances:
17 17 0.23
19 48 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:63798439 original size:36 final size:37
Alignment explanation
Indices: 63798375--63798472 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
63798365 AGATTACAAG
*
63798375 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGAAT
63798415 ATCATATCTAAGATTG-TATCATATCTAAGATTGAAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGAAT
63798451 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
63798473 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
39 1 0.02
40 8 0.15
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGAAT
Found at i:63799238 original size:211 final size:217
Alignment explanation
Indices: 63798874--63799374 Score: 735
Period size: 211 Copynumber: 2.3 Consensus size: 217
63798864 TTGACAATAT
* * * * *
63798874 AGAGATGTCAAATCATCTTGGATCTGCTTCAGCGTAAACACATAAAGGTCAGATCTGCTATGTTT
1 AGAGATGACAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCT
* ** *
63798939 TCGATTTGCTCCTTGAAAACACAAGGATGCTGAATCATCTTGGATCTGCTTCAATGTGAAAATAT
66 TCGATTTGCTCCTTGAAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCAATGTGAAAACAT
* *
63799004 CCGAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCCTCGAATATGGAGATGCCAAATCTGTT
131 CCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCATCGAATATGGAGATGCCAAATCTGTT
63799069 TATTCAATTT-A-T-T-C-T-C
196 TATTCAATTTGACTCTACATAC
* *
63799085 AGAGATGACAAATCATCTTGGATCTGCTTCAGTGTAAAAACCTGAAGGTCAGATCTGCTGTGTCT
1 AGAGATGACAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCT
* * *
63799150 TCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCCTCTTGGATCTGCTTCGATGTGAAAACAT
66 TCGATTTGCTCCTTGAAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCAATGTGAAAACAT
* * *
63799215 CCAAAGGTCATATCTGCTATGTCTTCGATCTGCTCTCCATCGAATATGGAGATGCCAGATCTGTT
131 CCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCATCGAATATGGAGATGCCAAATCTGTT
* *
63799280 TCTTCGATTTGATCTCTAACAATAC
196 TATTCAATTTGA-CTCT-AC-ATAC
*
63799305 AGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCT
1 AGAGATGACAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCT
63799370 TCGAT
66 TCGAT
63799375 CTACTCTCCC
Statistics
Matches: 257, Mismatches: 24, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
211 184 0.72
212 1 0.00
214 1 0.00
215 1 0.00
217 1 0.00
219 1 0.00
220 68 0.26
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32
Consensus pattern (217 bp):
AGAGATGACAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCT
TCGATTTGCTCCTTGAAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCAATGTGAAAACAT
CCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCATCGAATATGGAGATGCCAAATCTGTT
TATTCAATTTGACTCTACATAC
Found at i:63799764 original size:273 final size:273
Alignment explanation
Indices: 63799277--63799822 Score: 1074
Period size: 273 Copynumber: 2.0 Consensus size: 273
63799267 TGCCAGATCT
*
63799277 GTTTCTTCGATTTGATCTCTAACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAA
1 GTTTCTTCGATTTGATCTCTAACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAA
63799342 ACACCTGAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCCTCGAATATGGAGATGCCAAATC
66 ACACCTGAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCCTCGAATATGGAGATGCCAAATC
63799407 TGTTTATTCAATTTATTCTCAGAGATGACAAATCATCTTGGATCTGCTTCAGTGTAAACACCTAA
131 TGTTTATTCAATTTATTCTCAGAGATGACAAATCATCTTGGATCTGCTTCAGTGTAAACACCTAA
63799472 AGGTCAGATCTACTATGTCTTCAATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTAGAT
196 AGGTCAGATCTACTATGTCTTCAATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTAGAT
63799537 CTGCTTCGATGTG
261 CTGCTTCGATGTG
*
63799550 GTTTCTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAA
1 GTTTCTTCGATTTGATCTCTAACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAA
63799615 ACACCTGAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCCTCGAATATGGAGATGCCAAATC
66 ACACCTGAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCCTCGAATATGGAGATGCCAAATC
63799680 TGTTTATTCAATTTATTCTCAGAGATGACAAATCATCTTGGATCTGCTTCAGTGTAAACACCTAA
131 TGTTTATTCAATTTATTCTCAGAGATGACAAATCATCTTGGATCTGCTTCAGTGTAAACACCTAA
63799745 AGGTCAGATCTACTATGTCTTCAATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTAGAT
196 AGGTCAGATCTACTATGTCTTCAATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTAGAT
63799810 CTGCTTCGATGTG
261 CTGCTTCGATGTG
63799823 ACAACATCCA
Statistics
Matches: 271, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
273 271 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (273 bp):
GTTTCTTCGATTTGATCTCTAACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAA
ACACCTGAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCCTCGAATATGGAGATGCCAAATC
TGTTTATTCAATTTATTCTCAGAGATGACAAATCATCTTGGATCTGCTTCAGTGTAAACACCTAA
AGGTCAGATCTACTATGTCTTCAATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTAGAT
CTGCTTCGATGTG
Found at i:63800002 original size:220 final size:220
Alignment explanation
Indices: 63799582--63800723 Score: 1509
Period size: 220 Copynumber: 5.2 Consensus size: 220
63799572 CAATACAGAG
* *
63799582 ATGCCAAATCATCTTGGATCTACTTC-A-GTGTAAACA-CCTGAAGGTCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTT
* * * *
63799644 CGATCTACTCTCCCTCGAATATGGAGATGCCAAATCTGTTTATTCAATTT-AT-TCT-------C
65 CGATCTGCTCTCCCTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAAAAC
* * *
63799700 AGAGATGACAAATCATCTTGGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTACTATGTCT
130 AGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCT
*
63799765 TCAATTTGCTCCTTGTAAACACAAGA
195 TCGATTTGCTCCTTGTAAACACAAGA
* * * *
63799791 ATGCCAAATCATCTTAGATCTGCTTCGATGTGACAACATCCAAAGGTCGGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
* * * * *
63799856 GATCTGCTCTCCGTCGAATATGGTGATGCCAAATCTGTTTCTACGTTTTGTTCCCTGACAAAACA
66 GATCTGCTCTCCCTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAAAACA
* * * * *
63799921 GAGAAGCCAAATCATCTTGGATCTACTTCAGTGTAAACACTTGAAGGCCAGATCTGCTATGTATT
131 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
63799986 CGATTTGCTCCTTGTAAACACAAGA
196 CGATTTGCTCCTTGTAAACACAAGA
* * *
63800011 AAGCCAAATCATCTTGGACCTACTTCGATATGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
* ** * ** *
63800076 GATCTACTCTCTGTCGAATATGGAGATGCCAAAATCTGTTTCTTCAATCCGTTCTCTGAC-AATC
66 GATCTGCTCTCCCTCGAATATGGAGATGCC-AAATCTGTTTCTTCGATTTGTTCTCTGACAAAAC
* * *
63800140 TAGAGATGCCAAATCATCTTGGATCCGCTTCAGTGTAAACACCTGAAGGTTAGATCTGTTATGTC
130 -AGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTC
*
63800205 TTCGATTTTCTCCTTGTAAACACAAGA
194 TTCGATTTGCTCCTTGTAAACACAAGA
* * * * * *
63800232 ATGCCAAATAATTTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTTAGATCTACTATGTATTC
1 ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
* * * *
63800297 GATCTGCTCTCCCTTGAATATGGAGATGTCAGATCTGTTTCTTCGATTTGTTCTCTGACAATACA
66 GATCTGCTCTCCCTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAAAACA
* * *
63800362 GAGATGCCAAATCATCTTGGATCTGCTTTAGTGTAAACACTTGAAGGTTAGATCTGCTATGTCTT
131 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
* *
63800427 CAATTTGCTCCTTGTAAGCACAAGA
196 CGATTTGCTCCTTGTAAACACAAGA
* * * * *
63800452 ATGCCAAATCATCTTGAATCTGCTTCGATGTGAAAACATCCAAAGGTTAGATCTACTATGTATTC
1 ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
* * * *
63800517 GATCTGCTCTCCCTTGAATATGGAGATGTCAGATCTGTTTCTTCGATTTGTTCTCTGACAATACA
66 GATCTGCTCTCCCTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAAAACA
* * * * * *
63800582 GAGATGCCAATTCATCTTGGATCTACTTCAGAGTAAACAACTAAAGGTCAGATCAGCTATGTCTT
131 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
* * *
63800647 CGATTTGCTTCATGTAAACACAATA
196 CGATTTGCTCCTTGTAAACACAAGA
* *
63800672 ATGCCAAATCATTTTGGATCTACTTCGATGTGAAATCATCCAAAGGTCAGAT
1 ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCCAAAGGTCAGAT
63800724 TTGGCATTAT
Statistics
Matches: 819, Mismatches: 99, Indels: 19
0.87 0.11 0.02
Matches are distributed among these distances:
209 24 0.03
210 1 0.00
211 71 0.09
212 3 0.00
213 2 0.00
220 530 0.65
221 188 0.23
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.33
Consensus pattern (220 bp):
ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
GATCTGCTCTCCCTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAAAACA
GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
CGATTTGCTCCTTGTAAACACAAGA
Found at i:63800205 original size:441 final size:436
Alignment explanation
Indices: 63799584--63800723 Score: 1578
Period size: 441 Copynumber: 2.6 Consensus size: 436
63799574 ATACAGAGAT
* *
63799584 GCCAAATCATCTTGGATCTACTTC-A-GTGTAAACA-CCTGAAGGTCAGATCTGCTATGTCTTCG
1 GCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTTCG
* *
63799646 ATCTACTCTCCCTCGAATATGGAGATGCCAAATCTGTTTATTCAAT-TTAT-T--C--TCAGAGA
65 ATCTACTCTCCCTCGAATATGGAGATGCCAAATCTGTTTCTTCAATGTTCTCTGACAATCAGAGA
* * *
63799705 TGACAAATCATCTTGGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTACTATGTCTTCAAT
130 TGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTGCTATGTCTTCGAT
* *
63799770 TTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTAGATCTGCTTCGATGTGACAACATCCAAA
195 TTGCTCCTTGTAAACACAAGAATGCCAAATCATTTTGGATCTGCTTCGATGTGA-AACATCCAAA
* * * * *
63799835 GGTCGGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGTGATGCCAAATCTGTTTCTAC
259 GGTCAGATCTACTATGTATTCGATCTGCTCTCCCTCGAATATGGAGATGCCAAATCTGTTTCTAC
*
63799900 GTTTTGTTCCCTGACAAAACAGAGAAGCCAAATCATCTTGGATCTACTTCAGTGTAAACACTTGA
324 GATTTGTTCCCTGACAAAACAGAGAAGCCAAATCATCTTGGATCTACTTCAGTGTAAACACTTGA
*
63799965 AGGCCAGATCTGCTATGTATTCGATTTGCTCCTTGTAAACACAAGAAA
389 AGGCCAGATCTGCTATGTATTCAATTTGCTCCTTGTAAACACAAGAAA
* *
63800013 GCCAAATCATCTTGGACCTACTTCGATATGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGA
1 GCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGA
**
63800078 TCTACTCTCTGTCGAATATGGAGATGCCAAAATCTGTTTCTTCAATCCGTTCTCTGACAATCTAG
66 TCTACTCTCCCTCGAATATGGAGATGCC-AAATCTGTTTCTTCAAT--GTTCTCTGACAATC-AG
* * * *
63800143 AGATGCCAAATCATCTTGGATCCGCTTCAGTGTAAACACCTGAAGGTTAGATCTGTTATGTCTTC
127 AGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTGCTATGTCTTC
* *
63800208 GATTTTCTCCTTGTAAACACAAGAATGCCAAATAATTTTGGATCTGCTTCGATGTGAAAACATCC
192 GATTTGCTCCTTGTAAACACAAGAATGCCAAATCATTTTGGATCTGCTTCGATGTG-AAACATCC
* * * *
63800273 AAAGGTTAGATCTACTATGTATTCGATCTGCTCTCCCTTGAATATGGAGATGTCAGATCTGTTTC
256 AAAGGTCAGATCTACTATGTATTCGATCTGCTCTCCCTCGAATATGGAGATGCCAAATCTGTTTC
* * * * * *
63800338 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTTAGTGTAAACACT
321 TACGATTTGTTCCCTGACAAAACAGAGAAGCCAAATCATCTTGGATCTACTTCAGTGTAAACACT
** * * *
63800403 TGAAGGTTAGATCTGCTATGTCTTCAATTTGCTCCTTGTAAGCACAAGAAT
386 TGAAGGCCAGATCTGCTATGTATTCAATTTGCTCCTTGTAAACACAAGAAA
* * * * *
63800454 GCCAAATCATCTTGAATCTGCTTCGATGTGAAAACATCCAAAGGTTAGATCTACTATGTATTCGA
1 GCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGA
* * * * *
63800519 TCTGCTCTCCCTTGAATATGGAGATGTCAGATCTGTTTCTTCGATTTGTTCTCTGACAATACAGA
66 TCTACTCTCCCTCGAATATGGAGATGCCAAATCTGTTTCTTC-A-ATGTTCTCTGACAAT-CAGA
* * * * *
63800584 GATGCCAATTCATCTTGGATCTACTTCAGAGTAAACAACTAAAGGTCAGATCAGCTATGTCTTCG
128 GATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTGCTATGTCTTCG
* * * *
63800649 ATTTGCTTCATGTAAACACAATAATGCCAAATCATTTTGGATCTACTTCGATGTGAAATCATCCA
193 ATTTGCTCCTTGTAAACACAAGAATGCCAAATCATTTTGGATCTGCTTCGATGTGAAA-CATCCA
63800714 AAGGTCAGAT
257 AAGGTCAGAT
63800724 TTGGCATTAT
Statistics
Matches: 622, Mismatches: 71, Indels: 25
0.87 0.10 0.03
Matches are distributed among these distances:
429 23 0.04
430 1 0.00
431 58 0.09
432 18 0.03
435 3 0.00
436 1 0.00
438 1 0.00
439 3 0.00
440 151 0.24
441 361 0.58
442 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.33
Consensus pattern (436 bp):
GCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGA
TCTACTCTCCCTCGAATATGGAGATGCCAAATCTGTTTCTTCAATGTTCTCTGACAATCAGAGAT
GCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTGCTATGTCTTCGATT
TGCTCCTTGTAAACACAAGAATGCCAAATCATTTTGGATCTGCTTCGATGTGAAACATCCAAAGG
TCAGATCTACTATGTATTCGATCTGCTCTCCCTCGAATATGGAGATGCCAAATCTGTTTCTACGA
TTTGTTCCCTGACAAAACAGAGAAGCCAAATCATCTTGGATCTACTTCAGTGTAAACACTTGAAG
GCCAGATCTGCTATGTATTCAATTTGCTCCTTGTAAACACAAGAAA
Found at i:63800525 original size:89 final size:87
Alignment explanation
Indices: 63800365--63800525 Score: 207
Period size: 89 Copynumber: 1.8 Consensus size: 87
63800355 CAATACAGAG
* * * ** * *
63800365 ATGCCAAATCATCTTGGATCTGCTTTAGTGTAAACACTTGAAGGTTAGATCTGCTATGTCTTCAA
1 ATGCCAAATCATCTTGAATCTGCTTGAGTGAAAACACTCAAAGGTTAGATCTACTATGTATTCAA
*
63800430 TTTGCTCCTTGTAAGCACAAGA
66 TCTGCTCCTTGTAAGCACAAGA
63800452 ATGCCAAATCATCTTGAATCTGCTTCGATGTGAAAACA-TCCAAAGGTTAGATCTACTATGTATT
1 ATGCCAAATCATCTTGAATCTGCTT-GA-GTGAAAACACT-CAAAGGTTAGATCTACTATGTATT
*
63800516 CGATCTGCTC
63 CAATCTGCTC
63800526 TCCCTTGAAT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
87 24 0.39
88 2 0.03
89 36 0.58
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (87 bp):
ATGCCAAATCATCTTGAATCTGCTTGAGTGAAAACACTCAAAGGTTAGATCTACTATGTATTCAA
TCTGCTCCTTGTAAGCACAAGA
Found at i:63800767 original size:73 final size:73
Alignment explanation
Indices: 63800676--63801018 Score: 686
Period size: 73 Copynumber: 4.7 Consensus size: 73
63800666 ACAATAATGC
63800676 CAAATCATTTTGGATCTACTTCGATGTGAAATCATCCAAAGGTCAGATTTGGCATTATTGTGTTT
1 CAAATCATTTTGGATCTACTTCGATGTGAAATCATCCAAAGGTCAGATTTGGCATTATTGTGTTT
63800741 ACATGAAG
66 ACATGAAG
63800749 CAAATCATTTTGGATCTACTTCGATGTGAAATCATCCAAAGGTCAGATTTGGCATTATTGTGTTT
1 CAAATCATTTTGGATCTACTTCGATGTGAAATCATCCAAAGGTCAGATTTGGCATTATTGTGTTT
63800814 ACATGAAG
66 ACATGAAG
63800822 CAAATCATTTTGGATCTACTTCGATGTGAAATCATCCAAAGGTCAGATTTGGCATTATTGTGTTT
1 CAAATCATTTTGGATCTACTTCGATGTGAAATCATCCAAAGGTCAGATTTGGCATTATTGTGTTT
63800887 ACATGAAG
66 ACATGAAG
63800895 CAAATCATTTTGGATCTACTTCGATGTGAAATCATCCAAAGGTCAGATTTGGCATTATTGTGTTT
1 CAAATCATTTTGGATCTACTTCGATGTGAAATCATCCAAAGGTCAGATTTGGCATTATTGTGTTT
63800960 ACATGAAG
66 ACATGAAG
63800968 CAAATCATTTTGGATCTACTTCGATGTGAAATCATCCAAAGGTCAGATTTG
1 CAAATCATTTTGGATCTACTTCGATGTGAAATCATCCAAAGGTCAGATTTG
63801019 CTATGTCTTC
Statistics
Matches: 270, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 270 1.00
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.35
Consensus pattern (73 bp):
CAAATCATTTTGGATCTACTTCGATGTGAAATCATCCAAAGGTCAGATTTGGCATTATTGTGTTT
ACATGAAG
Found at i:63801350 original size:220 final size:220
Alignment explanation
Indices: 63800968--63801562 Score: 933
Period size: 220 Copynumber: 2.7 Consensus size: 220
63800958 TTACATGAAG
* * * * *
63800968 CAAATCATTTTGGATCTACTTCGATGTGAAATCATCCAAAGGTCAGATTTGCTATGTCTTCGATC
1 CAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTACGTCTTCGATC
* ** * * *
63801033 TTCTCTCTATCGAATATAGAGTTGCCAAATATGTTTCTTCGATTTGTTCTCTGACAATACAGAGA
66 TACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGA
* * * *
63801098 TGCCAAATCATCTTGGATCTGCTTTAGTGTAAACA-CTTGAAGGTTAGATCTGCTATGTCTTCGA
131 TGCCAAATCATCTTGGATCTGCTTCAGTGTAAACAGC-TGAAGGTCAAATCTACTATGTCTTCGA
63801162 TTTGCTCCTTGTAAACACAAGAATGC
195 TTTGCTCCTTGTAAACACAAGAATGC
* *
63801188 CAAATCATCTTGGATCTGCTTTGATGTGAAAACA-CACAAAGGTCAGATCTGCTACATCTTCGAT
1 CAAATCATCTTGGATCTGCTTCGATGTGAAAACATC-CAAAGGTCAGATCTGCTACGTCTTCGAT
* *
63801252 CTACTCTCCGTTGAATATGGGGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAG
65 CTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAG
** * *
63801317 ACACCAAATCATCTTGGGTCTGCTTCAGTGTAAACAGCTGCAGGTCAAATCTACTATGTCTTCGA
130 ATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACAGCTGAAGGTCAAATCTACTATGTCTTCGA
*
63801382 TTTTCTCCTTGTAAACACAAGAATGC
195 TTTGCTCCTTGTAAACACAAGAATGC
*
63801408 CAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTACTACGTCTTCGATC
1 CAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTACGTCTTCGATC
63801473 TACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGA
66 TACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGA
63801538 TGCCAAATCATCTTGGATCTGCTTC
131 TGCCAAATCATCTTGGATCTGCTTC
63801563 GATGTGAAAA
Statistics
Matches: 340, Mismatches: 32, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
219 1 0.00
220 337 0.99
221 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.33
Consensus pattern (220 bp):
CAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTACGTCTTCGATC
TACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGA
TGCCAAATCATCTTGGATCTGCTTCAGTGTAAACAGCTGAAGGTCAAATCTACTATGTCTTCGAT
TTGCTCCTTGTAAACACAAGAATGC
Found at i:63801652 original size:276 final size:276
Alignment explanation
Indices: 63801300--63801838 Score: 988
Period size: 276 Copynumber: 2.0 Consensus size: 276
63801290 TTCGATTTGT
* * * *
63801300 TCTCTGACAATACAGAGACACCAAATCATCTTGGGTCTGCTTCAGTGTAAACAGCTGCAGGTCAA
1 TCTCTAACAATACAGAGACACCAAATCATCTTGGCTCTGCTTCAGTGTAAACAACTGAAGGTCAA
*
63801365 ATCTACTATGTCTTCGATTTTCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTC
66 ATCTACTATGTCTTCGATTTCCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTC
63801430 GATGTGAAAACATCCAAAGGTCAGATCTACTACGTCTTCGATCTACTCTCCGTCGAATATGGAGA
131 GATGTGAAAACATCCAAAGGTCAGATCTACTACGTCTTCGATCTACTCTCCGTCGAATATGGAGA
63801495 TGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGC
196 TGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGC
63801560 TTCGATGTGAAAACAG
261 TTCGATGTGAAAACAG
** *
63801576 TCTCTAACAATACAGAGATGCCAAATCATCTTGGCTCTGCTTCAGTGTAAACAACTGAAGGTCAG
1 TCTCTAACAATACAGAGACACCAAATCATCTTGGCTCTGCTTCAGTGTAAACAACTGAAGGTCAA
*
63801641 ATCTGCTATGTCTTCGATTTCCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTC
66 ATCTACTATGTCTTCGATTTCCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTC
63801706 GATGTGAAAACATCCAAAGGTCAGATCTACTACGTCTTCGATCTACTCTCCGTCGAATATGGAGA
131 GATGTGAAAACATCCAAAGGTCAGATCTACTACGTCTTCGATCTACTCTCCGTCGAATATGGAGA
*
63801771 TGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGCTCTGC
196 TGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGC
63801836 TTC
261 TTC
63801839 AGTGTAAACA
Statistics
Matches: 253, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
276 253 1.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (276 bp):
TCTCTAACAATACAGAGACACCAAATCATCTTGGCTCTGCTTCAGTGTAAACAACTGAAGGTCAA
ATCTACTATGTCTTCGATTTCCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTC
GATGTGAAAACATCCAAAGGTCAGATCTACTACGTCTTCGATCTACTCTCCGTCGAATATGGAGA
TGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGC
TTCGATGTGAAAACAG
Found at i:63801836 original size:220 final size:220
Alignment explanation
Indices: 63801576--63802098 Score: 868
Period size: 220 Copynumber: 2.4 Consensus size: 220
63801566 GTGAAAACAG
* * *
63801576 TCTCTAACAATACAGAGATGCCAAATCATCTTGGCTCTGCTTCAGTGTAAACAACTGAAGGTCAG
1 TCTCTGACAATACAGAGATGCCAAATCATCTTGGCTCTGCTTCAGTGTAAACACCTGAAGGTCAA
63801641 ATCTGCTATGTCTTCGATTTCCTCCTTGTAAA-CACAAGAATGCCAAATCATCTTGGATCTGCTT
66 ATCTGCTATGTCTTCGATTTCCTCCTTGTAAACCA-AAGAATGCCAAATCATCTTGGATCTGCTT
*
63801705 CGATGTGAAAACATCCAAAGGTCAGATCTACTACGTCTTCGATCTACTCTCCGTCGAATATGGAG
130 CGATGTGAAAACATCCAAAGGTCAGATCTACTACGTCTTCGATCTACTCTCCGTCAAATATGGAG
* * *
63801770 ATGCCAAATCTGTTTCTTCGATTTGT
195 ATGCCAAATCTGTTTCTTCAATCTGC
63801796 TCTCTGACAATACAGAGATGCCAAATCATCTTGGCTCTGCTTCAGTGTAAACACCTGAAGGTCAA
1 TCTCTGACAATACAGAGATGCCAAATCATCTTGGCTCTGCTTCAGTGTAAACACCTGAAGGTCAA
* *
63801861 ATCTACTATGTCTTCGATTTGCTCCTTGTAAACCAAAGAATGCCAAATCATCTTGGATCTGCTTC
66 ATCTGCTATGTCTTCGATTTCCTCCTTGTAAACCAAAGAATGCCAAATCATCTTGGATCTGCTTC
* * * *
63801926 GATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATGTGGAGA
131 GATGTGAAAACATCCAAAGGTCAGATCTACTACGTCTTCGATCTACTCTCCGTCAAATATGGAGA
*
63801991 TGCCCAATCTGTTTCTTCAATCTGC
196 TGCCAAATCTGTTTCTTCAATCTGC
* * * *
63802016 TCTCTGACAATACAGAGATGCAAAATCATTTTGGCTCTACTTCAGTGTAAGCACCTGAAGGTCAA
1 TCTCTGACAATACAGAGATGCCAAATCATCTTGGCTCTGCTTCAGTGTAAACACCTGAAGGTCAA
63802081 ATCTGCTATGTCTTCGAT
66 ATCTGCTATGTCTTCGAT
63802099 CTGCTCTCCA
Statistics
Matches: 283, Mismatches: 19, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
220 281 0.99
221 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (220 bp):
TCTCTGACAATACAGAGATGCCAAATCATCTTGGCTCTGCTTCAGTGTAAACACCTGAAGGTCAA
ATCTGCTATGTCTTCGATTTCCTCCTTGTAAACCAAAGAATGCCAAATCATCTTGGATCTGCTTC
GATGTGAAAACATCCAAAGGTCAGATCTACTACGTCTTCGATCTACTCTCCGTCAAATATGGAGA
TGCCAAATCTGTTTCTTCAATCTGC
Found at i:63801973 original size:89 final size:87
Alignment explanation
Indices: 63801813--63801973 Score: 234
Period size: 89 Copynumber: 1.8 Consensus size: 87
63801803 CAATACAGAG
* * *
63801813 ATGCCAAATCATCTTGGCTCTGCTTCAGTGTAAACACCTGAAGGTCAAATCTACTATGTCTTCGA
1 ATGCCAAATCATCTTGGATCTGCTTCAGTGAAAACACCTAAAGGTCAAATCTACTATGTCTTCGA
*
63801878 TTTGCTCCTTGTAAACCAAAGA
66 TCTGCTCCTTGTAAACCAAAGA
* *
63801900 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTGGATCTGCTTC-A-GTGAAAACA-CCTAAAGGTCAAATCTACTATGTCTT
63801964 CGATCTGCTC
63 CGATCTGCTC
63801974 TCCGTCAAAT
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
87 25 0.38
88 1 0.02
89 37 0.57
90 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (87 bp):
ATGCCAAATCATCTTGGATCTGCTTCAGTGAAAACACCTAAAGGTCAAATCTACTATGTCTTCGA
TCTGCTCCTTGTAAACCAAAGA
Found at i:63802022 original size:496 final size:496
Alignment explanation
Indices: 63801080--63802058 Score: 1649
Period size: 496 Copynumber: 2.0 Consensus size: 496
63801070 TTCGATTTGT
* * *
63801080 TCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTTAGTGTAAACACTTGAAGGTTAG
1 TCTCTAACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACTTGAAGGTCAG
* *
63801145 ATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTT
66 ATCTGCTATGTCTTCGATTTCCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTC
* * *
63801210 GATGTGAAAACACACAAAGGTCAGATCTGCTACATCTTCGATCTACTCTCCGTTGAATATGGGGA
131 GATGTGAAAACACACAAAGGTCAGATCTACTACATCTTCGATCTACTCTCCGTCGAATATGGAGA
*
63801275 TGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGACACCAAATCATCTTGGGTCTGC
196 TGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGACACCAAATCATCTTGGCTCTGC
* * *
63801340 TTCAGTGTAAACAGCTGCAGGTCAAATCTACTATGTCTTCGATTTTCTCCTTGTAAACACAAGAA
261 TTCAGTGTAAACACCTGAAGGTCAAATCTACTATGTCTTCGATTTGCTCCTTGTAAACACAAGAA
63801405 TGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTACTACGTCTTCG
326 TGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTACTACGTCTTCG
* * * *
63801470 ATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAG
391 ATCTACTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCTGCTCTCTGACAATACAG
* *
63801535 AGATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACAG
456 AGATGCAAAATCATCTTGGATCTACTTCGATGTGAAAACAG
*
63801576 TCTCTAACAATACAGAGATGCCAAATCATCTTGGCTCTGCTTCAGTGTAAACAAC-TGAAGGTCA
1 TCTCTAACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAAC-ACTTGAAGGTCA
63801640 GATCTGCTATGTCTTCGATTTCCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTT
65 GATCTGCTATGTCTTCGATTTCCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTT
*
63801705 CGATGTGAAAACATC-CAAAGGTCAGATCTACTACGTCTTCGATCTACTCTCCGTCGAATATGGA
130 CGATGTGAAAACA-CACAAAGGTCAGATCTACTACATCTTCGATCTACTCTCCGTCGAATATGGA
**
63801769 GATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGCTCT
194 GATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGACACCAAATCATCTTGGCTCT
63801834 GCTTCAGTGTAAACACCTGAAGGTCAAATCTACTATGTCTTCGATTTGCTCCTTGTAAAC-CAAA
259 GCTTCAGTGTAAACACCTGAAGGTCAAATCTACTATGTCTTCGATTTGCTCCTTGTAAACAC-AA
* *
63801898 GAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCT
323 GAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTACTACGTCT
* * *
63801963 TCGATCTGCTCTCCGTCAAATGTGGAGATGCCCAATCTGTTTCTTCAATCTGCTCTCTGACAATA
388 TCGATCTACTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCTGCTCTCTGACAATA
* *
63802028 CAGAGATGCAAAATCATTTTGGCTCTACTTC
453 CAGAGATGCAAAATCATCTTGGATCTACTTC
63802059 AGTGTAAGCA
Statistics
Matches: 451, Mismatches: 29, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
495 1 0.00
496 447 0.99
497 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (496 bp):
TCTCTAACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACTTGAAGGTCAG
ATCTGCTATGTCTTCGATTTCCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTC
GATGTGAAAACACACAAAGGTCAGATCTACTACATCTTCGATCTACTCTCCGTCGAATATGGAGA
TGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGACACCAAATCATCTTGGCTCTGC
TTCAGTGTAAACACCTGAAGGTCAAATCTACTATGTCTTCGATTTGCTCCTTGTAAACACAAGAA
TGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTACTACGTCTTCG
ATCTACTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCTGCTCTCTGACAATACAG
AGATGCAAAATCATCTTGGATCTACTTCGATGTGAAAACAG
Found at i:63802099 original size:131 final size:131
Alignment explanation
Indices: 63801942--63802235 Score: 525
Period size: 131 Copynumber: 2.2 Consensus size: 131
63801932 AAAACATCCA
*
63801942 AAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATGTGGAGATGCCCAATCTGTTTCT
1 AAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCATCAAATGTGGAGATGCCCAATCTGTTTCT
*
63802007 TCAATCTGCTCTCTGACAATACAGAGATGCAAAATCATTTTGGCTCTACTTCAGTGTAAGCACCT
66 TCAATCTGCTCTCTGACAATACAGAGATGCAAAATCATTTTGGCTCTACTTCAGTGTAAACACCT
63802072 G
131 G
*
63802073 AAGGTCAAATCTGCTATGTCTTCGATCTGCTCTCCATCAAATGTGGAGATGCCCAATCTGTTTCT
1 AAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCATCAAATGTGGAGATGCCCAATCTGTTTCT
*
63802138 TCAATCTGCTCTCTGACAATACAGAGATGCAAAATCATTTTGGCTCTACTTCAGTGTAAACACTT
66 TCAATCTGCTCTCTGACAATACAGAGATGCAAAATCATTTTGGCTCTACTTCAGTGTAAACACCT
63802203 G
131 G
* * *
63802204 AAGGCCAGATCTGCTATGTATTCGATTTGCTC
1 AAGGTCAGATCTGCTATGTCTTCGATCTGCTC
63802236 CATGGAAACA
Statistics
Matches: 155, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
131 155 1.00
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (131 bp):
AAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCATCAAATGTGGAGATGCCCAATCTGTTTCT
TCAATCTGCTCTCTGACAATACAGAGATGCAAAATCATTTTGGCTCTACTTCAGTGTAAACACCT
G
Found at i:63802455 original size:220 final size:220
Alignment explanation
Indices: 63802073--63802757 Score: 1021
Period size: 220 Copynumber: 3.1 Consensus size: 220
63802063 TAAGCACCTG
* * * *
63802073 AAGGTCAAATCTGCTATGTCTTCGATCTGCTCTCCATCAAATGTGGAGATGCCC-AATCTGTTTC
1 AAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGAT-CCCAAATCTGTTTC
* *
63802137 TTCAATCTGCTCTCTGACAATACAGAGATGCAAAATCATTTTGGCTCTACTTCAGTGTAAACACT
65 TTCAATCTGTTCTCTGACAATACAGAGATGCCAAATCATTTTGGCTCTACTTCAGTGTAAACACT
63802202 TGAAGGCCAGATCTGCTATGTATTCGATTTGCTCCATGGAAACACAAGAAAGCCAAATCATCTTG
130 TGAAGGCCAGATCTGCTATGTATTCGATTTGCTCCATGGAAACACAAGAAAGCCAAATCATCTTG
*
63802267 GATCTGCTTCAATGTGAAAACATCCA
195 GATCTGCTTCGATGTGAAAACATCCA
* *
63802293 AAGGTCAGATCTGCTATGTCTTCGATCTGCTTTCCGTCGAATATGGTGATCCCAAATCTGTTTCT
1 AAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATCCCAAATCTGTTTCT
* * * * * * *
63802358 TCGATTTGTTCCCTGACAAAACAGAGATGCCAAATCGTCTTGGATCTACTTCAGTGTAAACACTT
66 TCAATCTGTTCTCTGACAATACAGAGATGCCAAATCATTTTGGCTCTACTTCAGTGTAAACACTT
63802423 GAAGGCCAGATCTGCTATGTATTCGATTTGCTCCATGGAAACACAAGAAAGCCAAATCATCTTGG
131 GAAGGCCAGATCTGCTATGTATTCGATTTGCTCCATGGAAACACAAGAAAGCCAAATCATCTTGG
*
63802488 ACCTGCTTCGATGTGAAAACATCCA
196 ATCTGCTTCGATGTGAAAACATCCA
* * *
63802513 AAGGTTAGATCTGCTATGTCTTCGATCTCCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCT
1 AAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATCCCAAATCTGTTTCT
* * *
63802578 TCAATCCGTTCTCTGACAATACAGAGATGCCAAATCATTTTGGCTCTACTTCAGTGTAAGCACCT
66 TCAATCTGTTCTCTGACAATACAGAGATGCCAAATCATTTTGGCTCTACTTCAGTGTAAACACTT
* * * * * * * * * *
63802643 GAAGGTCAAATCTGCTATGTCTTCGATTTACTCCTTGTAAACACGAGAATGCCAAATAATCTTGT
131 GAAGGCCAGATCTGCTATGTATTCGATTTGCTCCATGGAAACACAAGAAAGCCAAATCATCTTGG
* *
63802708 TTCTGCTTTGATGTGAAAACATCCA
196 ATCTGCTTCGATGTGAAAACATCCA
* *
63802733 AAGGTCAGATCTACTACGTCTTCGA
1 AAGGTCAGATCTGCTATGTCTTCGA
63802758 AATCATCTTG
Statistics
Matches: 416, Mismatches: 48, Indels: 2
0.89 0.10 0.00
Matches are distributed among these distances:
219 3 0.01
220 413 0.99
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (220 bp):
AAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATCCCAAATCTGTTTCT
TCAATCTGTTCTCTGACAATACAGAGATGCCAAATCATTTTGGCTCTACTTCAGTGTAAACACTT
GAAGGCCAGATCTGCTATGTATTCGATTTGCTCCATGGAAACACAAGAAAGCCAAATCATCTTGG
ATCTGCTTCGATGTGAAAACATCCA
Found at i:63803147 original size:220 final size:220
Alignment explanation
Indices: 63802757--63803479 Score: 1101
Period size: 220 Copynumber: 3.3 Consensus size: 220
63802747 TACGTCTTCG
* * *
63802757 AAATCATCTTGGACCTGCTTCGATGTGAAAACATCCAAAGGTTAGATCTACTATGTCTTCGATC-
1 AAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCT
* * * *
63802821 CGCTCTCCCTTGAATATGGAGATGTCAAATCTGTTTCTTCGATTTGTTCTCTGACAATATAGAGA
66 C-CTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGA
* * * * * * * * * *
63802886 TGCCAAATCATCTTGGATCTTATTTAGTGTAAACACCTGAAGGTCAGATCTG-CATTGTCTTCAA
130 TGCCAAATAATCTTGGATCCTCTTCAGTTTAAACGCCTGAAGGCCAAATCTGTTA-TGTCTTCGA
*
63802950 TTTTCTCCTTGTAAACACAAGAATGCC
194 TTTGCTCCTTGTAAACACAAGAATGCC
* * *
63802977 AAATCATGTTGAATCTGCTTCGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCT
1 AAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCT
* **
63803042 CCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCAATCCGTTCTCTGACAATACAGAGAT
66 CCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGAT
63803107 GCCAAATAATCTTGGATCCTCTTCAGTTTAAACGCCTGAAGGCCAAATCTGTTATGTCTTCGATT
131 GCCAAATAATCTTGGATCCTCTTCAGTTTAAACGCCTGAAGGCCAAATCTGTTATGTCTTCGATT
63803172 TGCTCCTTGTAAAC-CAAAGAATGCC
196 TGCTCCTTGTAAACAC-AAGAATGCC
*
63803197 AAATCATCTTGGATCTGCTTCAATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCT
1 AAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCT
* ** * *
63803262 GCTCTCCGTCGAATATAAAGATGCCAAATCTATTTCTTTGATTTGTTCTCTGACAATACAGAGAT
66 CCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGAT
63803327 GCCAAATAATCTTGGATCCTCTTCAGTTTAAACGCCTGAAGGCCAAATCTGTTATGTCTTCGATT
131 GCCAAATAATCTTGGATCCTCTTCAGTTTAAACGCCTGAAGGCCAAATCTGTTATGTCTTCGATT
63803392 TGCTCCTTGTAAACACAAGAATGCC
196 TGCTCCTTGTAAACACAAGAATGCC
* * *
63803417 AAATCATTTTGGATCTGCTTCGATGTGAAATCGTCCAAAGGTCAGATCTGCTATGTCTTCGAT
1 AAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGAT
63803480 TTTCTTCTTG
Statistics
Matches: 461, Mismatches: 38, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
219 1 0.00
220 457 0.99
221 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (220 bp):
AAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCT
CCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGAT
GCCAAATAATCTTGGATCCTCTTCAGTTTAAACGCCTGAAGGCCAAATCTGTTATGTCTTCGATT
TGCTCCTTGTAAACACAAGAATGCC
Found at i:63803477 original size:721 final size:726
Alignment explanation
Indices: 63802073--63804240 Score: 2746
Period size: 721 Copynumber: 2.9 Consensus size: 726
63802063 TAAGCACCTG
* * * * *
63802073 AAGGTCAAATCTGCTATGTCTTCGATCTGCTCTCCATCAAATGTGGAGATGCCCAATCTGTTTCT
1 AAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCATCGAATATGGAGATGTCAAATCTGTTTCT
* * * * * * *
63802138 TCAATCTGCTCTCTGACAATACAGAGATGCAAAATCATTTTGGCTC-TACTTCAGTGTAAACACT
66 TCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTTA-TTCAGTGTAAACACC
* * * * *
63802202 TGAAGGCCAGATCTGCTATGTATTCGATTTGCTCCATGGAAACACAAGAAAGCCAAATCATCTTG
130 TGAAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTG
* *
63802267 GATCTGCTTCAATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTTTCCGTCG
195 GATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCG
* * * *
63802332 AATATGGTGATCCCAAATCTGTTTCTTCGATTTGTTCCCTGACAAAACAGAGATGCCAAATCGTC
260 AATATGGAGATCCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATC
* * * * *
63802397 TTGGATCTACTTCAGTGTAAACACTTGAAGGCCAGATCTGCTATGTATTCGATTTGCTCCATGGA
325 TTGGATCTACTTCAGTGTAAACACCTGAAGGCCAAATCTGCTATGTCTTCGATTTGCTCCTTGTA
* * *
63802462 AACACAAGAAAGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACATCCAAAGGTTAGATCTGC
390 AACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGC
*
63802527 TATGTCTTCGATCTCCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCAATCCGTTCTCT
455 TATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCAATCCGTTCTCT
* * *
63802592 GACAATACAGAGATGCCAAATCATTTTGGCT-CTACTTCAGTGTAAGCACCTGAAGGTCAAATCT
520 GACAATACAGAGATGCCAAATCATCTTGGATCCTACTTCAGTGTAAACACCTGAAGGTCAAATCT
* * ** *
63802656 GCTATGTCTTCGATTTACTCCTTGTAAACACGAGAATGCCAAATAATCTTGTTTCTGCTTTGATG
585 GCTATGTCTTCGATTTACTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATG
**
63802721 TGAAAACATCCAAAGGTCAGATCTACTACGTCTTCGA-AAT-C-ATC-TTGGA-CCTGCTTCGAT
650 TGAAAACATCCAAAGGTCAGATCTACTACGTCTTCGATAATCCAATCTTTGGATCC-AATTCGAT
63802781 GTGAAAACATCCA
714 GTGAAAACATCCA
* * * * *
63802794 AAGGTTAGATCTACTATGTCTTCGATCCGCTCTCCCTTGAATATGGAGATGTCAAATCTGTTTCT
1 AAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCATCGAATATGGAGATGTCAAATCTGTTTCT
* *
63802859 TCGATTTGTTCTCTGACAATATAGAGATGCCAAATCATCTTGGATCTTATTTAGTGTAAACACCT
66 TCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTTATTCAGTGTAAACACCT
* * *
63802924 GAAGGTCAGATCTGC-ATTGTCTTCAATTTTCTCCTTGTAAACACAAGAATGCCAAATCATGTTG
131 GAAGGTCAGATCTGCTA-TGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTG
* * *
63802988 AATCTGCTTCGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTCCTCTCCGTCG
195 GATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCG
* * ** *
63803053 AATATGGAGATGCCAAATCTGTTTCTTCAATCCGTTCTCTGACAATACAGAGATGCCAAATAATC
260 AATATGGAGATCCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATC
* * *
63803118 TTGGATCCT-CTTCAGTTTAAACGCCTGAAGGCCAAATCTGTTATGTCTTCGATTTGCTCCTTGT
325 TTGGAT-CTACTTCAGTGTAAACACCTGAAGGCCAAATCTGCTATGTCTTCGATTTGCTCCTTGT
*
63803182 AAAC-CAAAGAATGCCAAATCATCTTGGATCTGCTTCAATGTGAAAACATCCAAAGGTCAGATCT
389 AAACAC-AAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCT
** * ** **
63803246 GCTATGTCTTCGATCTGCTCTCCGTCGAATATAAAGATGCCAAATCTATTTCTTTGATTTGTTCT
453 GCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCAATCCGTTCT
* * * *
63803311 CTGACAATACAGAGATGCCAAATAATCTTGGATCCT-CTTCAGTTTAAACGCCTGAAGGCCAAAT
518 CTGACAATACAGAGATGCCAAATCATCTTGGATCCTACTTCAGTGTAAACACCTGAAGGTCAAAT
* * *
63803375 CTGTTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATTTTGGATCTGCTTCGA
583 CTGCTATGTCTTCGATTTACTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGA
* * *
63803440 TGTGAAATCGTCCAAAGGTCAGATCTGCTATGTCTTCGATTTTCTTCTTGTAAACAAAATAATGC
648 TGTGAAAACATCCAAAGGTCAGA--T-CTA---CTACG----TCTTC--G--------ATAAT-C
* * *
63803505 CAAATCATTTTGGATCCAATTCGATGTGAAATCGTGCA
692 C-AATC--TTTGGATCCAATTCGATGTGAAAACATCCA
* * * *
63803543 AAGGTCAGATCTGTTATGTCTTCGATCTTCTCTCCATCGAATATAGAGAT-TCCAAATATGTTTC
1 AAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCATCGAATATGGAGATGT-CAAATCTGTTTC
* ** *
63803607 TTCGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACG
65 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTTATTCAGTGTAAACACC
* *
63803672 TAAAGGTCAGATCTGCTATGTCCTT-GATTTGCTCCTTGTAAACACAAGAATGCCAAATCATTTT
130 TGAAGGTCAGATCTGCTATGT-CTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTT
* * * * *
63803736 GGATCTACTTCGTTGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCAATCAGCTCTCCATC
194 GGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTC
* * * *
63803801 GAATATAGAGATTCCAAATATGTTTCTTCGATTTGTTCTTTGACAATACAGAGATGCCAAATCAT
259 GAATATGGAGATCCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCAT
* * * * * *
63803866 CTTGGATCTGCTTCAGTGTAAACACCTAAAGGTCATATCTACTATGTCTTTGATTTTG-TCCTTG
324 CTTGGATCTACTTCAGTGTAAACACCTGAAGGCCAAATCTGCTATGTCTTCGA-TTTGCTCCTTG
* *
63803930 TAAACACAAGAATGCCAAATCATCTTGGATATGATTCGATGTGAAAACATCCAAAGGTCAGATCT
388 TAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCT
* * *
63803995 GCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATTTGTTTCTTCAATCCGGTCT
453 GCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCAATCCGTTCT
* *
63804060 CTAACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGGCTCTGCTTCAGTGTAAACAACT
518 CTGACAATACAGAGATGCCAAATCATCTTGGATC--C-T-A-------CTTCAGTGTAAACACCT
* * * *
63804125 GAACGTCAGATCTGCTATGTCTTCTATTTCCTCCTTGTAAACACGAA-AATGCCAAATCATCTTG
572 GAAGGTCAAATCTGCTATGTCTTCGATTTACTCCTTGTAAACAC-AAGAATGCCAAATCATCTTG
*
63804189 GATCTGCTTCAATGTGAAAACATCCAAAGGTCAGATCTACTACGTCTTCGAT
636 GATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTACTACGTCTTCGAT
63804241 CTACTCTCCG
Statistics
Matches: 1238, Mismatches: 156, Indels: 86
0.84 0.11 0.06
Matches are distributed among these distances:
720 2 0.00
721 578 0.47
722 6 0.00
723 1 0.00
724 3 0.00
727 4 0.00
731 5 0.00
733 1 0.00
741 3 0.00
742 3 0.00
744 1 0.00
746 3 0.00
748 3 0.00
749 497 0.40
750 11 0.01
751 6 0.00
752 1 0.00
755 4 0.00
758 3 0.00
759 1 0.00
761 100 0.08
762 2 0.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.32
Consensus pattern (726 bp):
AAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCATCGAATATGGAGATGTCAAATCTGTTTCT
TCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTTATTCAGTGTAAACACCT
GAAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
ATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGA
ATATGGAGATCCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
TGGATCTACTTCAGTGTAAACACCTGAAGGCCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAA
ACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCT
ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCAATCCGTTCTCTG
ACAATACAGAGATGCCAAATCATCTTGGATCCTACTTCAGTGTAAACACCTGAAGGTCAAATCTG
CTATGTCTTCGATTTACTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGT
GAAAACATCCAAAGGTCAGATCTACTACGTCTTCGATAATCCAATCTTTGGATCCAATTCGATGT
GAAAACATCCA
Found at i:63803480 original size:89 final size:89
Alignment explanation
Indices: 63803373--63803568 Score: 311
Period size: 89 Copynumber: 2.2 Consensus size: 89
63803363 TGAAGGCCAA
* ***
63803373 ATCTGTTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATTTTGGATCTGCTTC
1 ATCTGTTATGTCTTCGATTTGCTCCTTGTAAACAAAAGAATGCCAAATCATTTTGGATCCAATTC
63803438 GATGTGAAATCGTCCAAAGGTCAG
66 GATGTGAAATCGTCCAAAGGTCAG
* * * *
63803462 ATCTGCTATGTCTTCGATTTTCTTCTTGTAAACAAAATAATGCCAAATCATTTTGGATCCAATTC
1 ATCTGTTATGTCTTCGATTTGCTCCTTGTAAACAAAAGAATGCCAAATCATTTTGGATCCAATTC
*
63803527 GATGTGAAATCGTGCAAAGGTCAG
66 GATGTGAAATCGTCCAAAGGTCAG
63803551 ATCTGTTATGTCTTCGAT
1 ATCTGTTATGTCTTCGAT
63803569 CTTCTCTCCA
Statistics
Matches: 97, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
89 97 1.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.36
Consensus pattern (89 bp):
ATCTGTTATGTCTTCGATTTGCTCCTTGTAAACAAAAGAATGCCAAATCATTTTGGATCCAATTC
GATGTGAAATCGTCCAAAGGTCAG
Found at i:63803679 original size:220 final size:220
Alignment explanation
Indices: 63803412--63804342 Score: 1179
Period size: 220 Copynumber: 4.2 Consensus size: 220
63803402 AAACACAAGA
* *
63803412 ATGCCAAATCATTTTGGATCTGCTTC-GATGTGAAA-TCGTCCAAAGGTCAGATCTGCTATGTCT
1 ATGCCAAATCATCTTGGATCTGCTTCAG-TGT-AAACACGT--AAAGGTCAGATCTGCTATGTCT
* * * * * * *
63803475 TCGATTTTCTTCTTGTAAACAAAATAATGCCAAATCATTTTGGATCCAATTCGATGTGAAATCGT
62 TCGATTTTCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTAATTCGATGTGAAAACAT
* * * *
63803540 GCAAAGGTCAGATCTGTTATGTCTTCGATCTTCTCTCCATCGAATATAGAGATTCCAAATATGTT
127 CCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCATCGAATATAGAGATGCCAAATATGTT
*
63803605 TCTTCGATTTGTTCTTTGACAATACAGAG
192 TCTTCGATTTGTTCTCTGACAATACAGAG
63803634 ATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACGTAAAGGTCAGATCTGCTATGTCCTT-G
1 ATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACGTAAAGGTCAGATCTGCTATGT-CTTCG
* * * *
63803698 ATTTGCTCCTTGTAAACACAAGAATGCCAAATCATTTTGGATCTACTTCGTTGTGAAAACATCCA
65 ATTTTCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTAATTCGATGTGAAAACATCCA
* * *
63803763 AAGGTCAGATCTGCTATGTCTTCAATCAGCTCTCCATCGAATATAGAGATTCCAAATATGTTTCT
130 AAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCATCGAATATAGAGATGCCAAATATGTTTCT
*
63803828 TCGATTTGTTCTTTGACAATACAGAG
195 TCGATTTGTTCTCTGACAATACAGAG
* * * *
63803854 ATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTAAAGGTCATATCTACTATGTCTTTGA
1 ATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACGTAAAGGTCAGATCTGCTATGTCTTCGA
* * *
63803919 TTTTGTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATATGATTCGATGTGAAAACATCCAA
66 TTTTCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTAATTCGATGTGAAAACATCCAA
* * * *
63803984 AGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATTTGTTTCTT
131 AGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCATCGAATATAGAGATGCCAAATATGTTTCTT
* ** * *
63804049 CAATCCGGTCTCTAACAATACAGAG
196 CGATTTGTTCTCTGACAATACAGAG
* *
63804074 ATGCCAAATCATCTTGGATCTACTTCAGGCTCTGCTTCAGTGTAAACAAC-TGAACGTCAGATCT
1 ATGCCAAATCATCTTGG---------A---TCTGCTTCAGTGTAAAC-ACGTAAAGGTCAGATCT
* * ** *
63804138 GCTATGTCTTCTATTTCCTCCTTGTAAACACGAA-AATGCCAAATCATCTTGGATCTGCTTCAAT
53 GCTATGTCTTCGATTTTCTCCTTGTAAACAC-AAGAATGCCAAATCATCTTGGATCTAATTCGAT
* * * * *
63804202 GTGAAAACATCCAAAGGTCAGATCTACTACGTCTTCGATCTACTCTCCGTCGAATATGGAGATGC
117 GTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCATCGAATATAGAGATGC
*
63804267 CAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAG
182 CAAATATGTTTCTTCGATTTGTTCTCTGACAATACAGAG
**
63804306 ACACCAAATCATCTTGGATCTGCTTCAGTGTAAACAC
1 ATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACAC
63804343 CTGAAGGCCN
Statistics
Matches: 629, Mismatches: 62, Indels: 39
0.86 0.08 0.05
Matches are distributed among these distances:
219 5 0.01
220 390 0.62
221 6 0.01
222 31 0.05
223 2 0.00
229 1 0.00
232 190 0.30
233 4 0.01
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.33
Consensus pattern (220 bp):
ATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACGTAAAGGTCAGATCTGCTATGTCTTCGA
TTTTCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTAATTCGATGTGAAAACATCCAA
AGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCATCGAATATAGAGATGCCAAATATGTTTCTT
CGATTTGTTCTCTGACAATACAGAG
Found at i:63803930 original size:529 final size:529
Alignment explanation
Indices: 63802885--63804008 Score: 1555
Period size: 529 Copynumber: 2.1 Consensus size: 529
63802875 CAATATAGAG
* * * * *
63802885 ATGCCAAATCATCTTGGATCTTATT-TA-GTGTAAACA-CCTGAAGGTCAGATCTGC-ATTGTCT
1 ATGCCAAATCATCTTGGATATGATTCGATGTGAAAACATCC-AAAGGTCAGATCTGCTA-TGTCT
* * ***
63802946 TCAATTTTCTCCTTGTAAACACAAGAATGCCAAATCATGTTGAATCTGCTTCGATGTGAAAACAT
64 TCGATTTTCTCCTTGTAAACAAAAGAATGCCAAATCATGTTGAATCCAATTCGATGTGAAAACAT
* * * *
63803011 CCAAAGGTTAGATCTGCTATGTCTTCGATCTCCTCTCCGTCGAATATGGAGATGCCAAATCTGTT
129 CCAAAGGTCAGATCTGCTATGTCTTCGATCTCCTCTCCATCGAATATAGAGATGCCAAATATGTT
* *
63803076 TCTTCAATCCGTTCTCTGACAATACAGAGATGCCAAATAATCTTGGATCCTCTTCAGTTTAAACG
194 TCTTCAATCCGTTCTCTGACAATACAGAGATGCCAAATAATCTTGGATCCTCTTCAGTGTAAACA
* *
63803141 CCTGAAGGCCAAATCTGTTATGTCTTCGATTTGCTCCTTGTAAACCAAAGAATGCCAAATCATCT
259 CCTAAAGGCCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACCAAAGAATGCCAAATCATCT
* * * *
63803206 TGGATCTGCTTCAATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGT
324 TGGATCTACTTCAATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCAATCAGCTCTCCAT
* *
63803271 CGAATATAAAGATGCCAAATCTATTTCTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATAA
389 CGAATATAAAGATGCCAAATATATTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATAA
* * * **
63803336 TCTTGGATCCTCTTCAGTTTAAACGCCTGAAGGCCAAATCTGTTATGTCTTCGATTTGCTCCTTG
454 TCTTGGATCCTCTTCAGTGTAAACACCTAAAGGCCAAATCTACTATGTCTTCGATTTGCTCCTTG
63803401 TAAACACAAGA
519 TAAACACAAGA
* * * * *
63803412 ATGCCAAATCATTTTGGATCTGCTTCGATGTGAAATCGTCCAAAGGTCAGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTGGATATGATTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
* * * * * * *
63803477 GATTTTCTTCTTGTAAACAAAATAATGCCAAATCATTTTGGATCCAATTCGATGTGAAATCGTGC
66 GATTTTCTCCTTGTAAACAAAAGAATGCCAAATCATGTTGAATCCAATTCGATGTGAAAACATCC
* * *
63803542 AAAGGTCAGATCTGTTATGTCTTCGATCTTCTCTCCATCGAATATAGAGATTCCAAATATGTTTC
131 AAAGGTCAGATCTGCTATGTCTTCGATCTCCTCTCCATCGAATATAGAGATGCCAAATATGTTTC
* ** * *
63803607 TTCGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTGGAT-CTGCTTCAGTGTAAACAC
196 TTCAATCCGTTCTCTGACAATACAGAGATGCCAAATAATCTTGGATCCT-CTTCAGTGTAAACAC
* * * *
63803671 GTAAAGGTCAGATCTGCTATGTCCTT-GATTTGCTCCTTGTAAA-CACAAGAATGCCAAATCATT
260 CTAAAGGCCAAATCTGCTATGT-CTTCGATTTGCTCCTTGTAAACCA-AAGAATGCCAAATCATC
**
63803734 TTGGATCTACTTCGTTGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCAATCAGCTCTCCA
323 TTGGATCTACTTCAATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCAATCAGCTCTCCA
* * * * *
63803799 TCGAATATAGAGATTCCAAATATGTTTCTTCGATTTGTTCTTTGACAATACAGAGATGCCAAATC
388 TCGAATATAAAGATGCCAAATATATTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATA
* * *
63803864 ATCTTGGAT-CTGCTTCAGTGTAAACACCTAAAGGTCATATCTACTATGTCTTTGATTTTG-TCC
453 ATCTTGGATCCT-CTTCAGTGTAAACACCTAAAGGCCAAATCTACTATGTCTTCGA-TTTGCTCC
63803927 TTGTAAACACAAGA
516 TTGTAAACACAAGA
63803941 ATGCCAAATCATCTTGGATATGATTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTGGATATGATTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
63804006 GAT
66 GAT
63804009 CTGCTCTCCG
Statistics
Matches: 522, Mismatches: 66, Indels: 16
0.86 0.11 0.03
Matches are distributed among these distances:
527 22 0.04
528 7 0.01
529 483 0.93
530 10 0.02
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (529 bp):
ATGCCAAATCATCTTGGATATGATTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
GATTTTCTCCTTGTAAACAAAAGAATGCCAAATCATGTTGAATCCAATTCGATGTGAAAACATCC
AAAGGTCAGATCTGCTATGTCTTCGATCTCCTCTCCATCGAATATAGAGATGCCAAATATGTTTC
TTCAATCCGTTCTCTGACAATACAGAGATGCCAAATAATCTTGGATCCTCTTCAGTGTAAACACC
TAAAGGCCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACCAAAGAATGCCAAATCATCTTG
GATCTACTTCAATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCAATCAGCTCTCCATCG
AATATAAAGATGCCAAATATATTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATAATC
TTGGATCCTCTTCAGTGTAAACACCTAAAGGCCAAATCTACTATGTCTTCGATTTGCTCCTTGTA
AACACAAGA
Found at i:63804279 original size:232 final size:232
Alignment explanation
Indices: 63803872--63804333 Score: 685
Period size: 232 Copynumber: 2.0 Consensus size: 232
63803862 TCATCTTGGA
* * * **
63803872 TCTGCTTCAGTGTAAACACCTAAAGGTCATATCTACTATGTCTTTGATTTTGTCCTTGTAAACAC
1 TCTGCTTCAGTGTAAACAACTAAACGTCAGATCTACTATGTCTTTGATTTCCTCCTTGTAAACAC
* * *
63803937 AAGAATGCCAAATCATCTTGGATATGATTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGT
66 AAGAATGCCAAATCATCTTGGATATGATTCAATGTGAAAACATCCAAAGGTCAGATCTACTACGT
* *
63804002 CTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATTTGTTTCTTCAATCCGGTCTCTAACAA
131 CTTCGATCTACTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCCGGTCTCTAACAA
**
63804067 TACAGAGATGCCAAATCATCTTGGATCTACTTCAGGC
196 TACAGAGACACCAAATCATCTTGGATCTACTTCAGGC
* *
63804104 TCTGCTTCAGTGTAAACAACTGAACGTCAGATCTGCTATGTCTTCT-ATTTCCTCCTTGTAAACA
1 TCTGCTTCAGTGTAAACAACTAAACGTCAGATCTACTATGTCTT-TGATTTCCTCCTTGTAAACA
* *
63804168 CGAA-AATGCCAAATCATCTTGGATCTGCTTCAATGTGAAAACATCCAAAGGTCAGATCTACTAC
65 C-AAGAATGCCAAATCATCTTGGATATGATTCAATGTGAAAACATCCAAAGGTCAGATCTACTAC
* * ** * *
63804232 GTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGAC
129 GTCTTCGATCTACTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCCGGTCTCTAAC
*
63804297 AATACAGAGACACCAAATCATCTTGGATCTGCTTCAG
194 AATACAGAGACACCAAATCATCTTGGATCTACTTCAG
63804334 TGTAAACACC
Statistics
Matches: 205, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
232 202 0.99
233 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.32
Consensus pattern (232 bp):
TCTGCTTCAGTGTAAACAACTAAACGTCAGATCTACTATGTCTTTGATTTCCTCCTTGTAAACAC
AAGAATGCCAAATCATCTTGGATATGATTCAATGTGAAAACATCCAAAGGTCAGATCTACTACGT
CTTCGATCTACTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCCGGTCTCTAACAA
TACAGAGACACCAAATCATCTTGGATCTACTTCAGGC
Found at i:63804291 original size:452 final size:440
Alignment explanation
Indices: 63803368--63804349 Score: 1224
Period size: 452 Copynumber: 2.2 Consensus size: 440
63803358 ACGCCTGAAG
* * * *
63803368 GCCAAATCTGTTATGTCTTCGATTTGCTCCTTGTA-AACACA-AGAATGCCAAATCATTTTGGAT
1 GCCAAATCTG-T-T-TCTTCGATTTGTTCTTTG-ACAATACAGAG-ATGCCAAATCATCTTGGAT
* * *
63803431 CTGCTTC-GATGTGAAATCGTCC-AAAGGTCAGATCTGCTATGTCTTCGATTTTCTTCTTGTAAA
61 CTGCTTCAG-TGT-AAA-C-ACCTAAAGGTCAGATCTACTATGTCTTCGATTTTCTCCTTGTAAA
* * * * * * *
63803494 CAAAATAATGCCAAATCATTTTGGATCCAATTCGATGTGAAATCGTGCAAAGGTCAGATCTGTTA
122 CAAAAGAATGCCAAATCATCTTGGATACAATTCGATGTGAAAACATCCAAAGGTCAGATCTGCTA
* * * * ** * * *
63803559 TGTCTTCGATCTTCTCTCCATCGAATATAGAGATTCCAAATATGTTTCTTCGATTTGTTCTTTGA
187 TGTCTTCGATCTGCTCTCCATCAAATATAGAGATGCCAAATATGTTTCTTCAATCCGGTCTCTAA
*
63803624 CAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACGTAAAGGTCAGATCTGCT
252 CAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACGTAAACGTCAGATCTGCT
* * **
63803689 ATGTCCTTGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATTTTGGATCTACTTCGTTGTGA
317 ATGTCCTTGATTTCCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTACTTCAATGTGA
* *
63803754 AAACATCCAAAGGTCAGATCTGCTATGTCTTCAATCAGCTCTCCATCGAATATAGAGAT
382 AAACATCCAAAGGTCAGATCTACTACGTCTTCAATCAGCTCTCCATCGAATATAGAGAT
* *
63803813 TCCAAATATGTTTCTTCGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTGGATCTGCT
1 GCCAAATCTGTTTCTTCGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTGGATCTGCT
* * * *
63803878 TCAGTGTAAACACCTAAAGGTCATATCTACTATGTCTTTGATTTTGTCCTTGTAAACACAAGAAT
66 TCAGTGTAAACACCTAAAGGTCAGATCTACTATGTCTTCGATTTTCTCCTTGTAAACAAAAGAAT
**
63803943 GCCAAATCATCTTGGATATGATTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGA
131 GCCAAATCATCTTGGATACAATTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGA
* * *
63804008 TCTGCTCTCCGTCAAATATGGAGATGCCAAATTTGTTTCTTCAATCCGGTCTCTAACAATACAGA
196 TCTGCTCTCCATCAAATATAGAGATGCCAAATATGTTTCTTCAATCCGGTCTCTAACAATACAGA
*
63804073 GATGCCAAATCATCTTGGATCTACTTCAGGCTCTGCTTCAGTGTAAACAAC-TGAACGTCAGATC
261 GATGCCAAATCATCTTGG---------A---TCTGCTTCAGTGTAAAC-ACGTAAACGTCAGATC
* *
63804137 TGCTATGT-CTTCTATTTCCTCCTTGTAAACACGAA-AATGCCAAATCATCTTGGATCTGCTTCA
313 TGCTATGTCCTT-GATTTCCTCCTTGTAAACAC-AAGAATGCCAAATCATCTTGGATCTACTTCA
* * *
63804200 ATGTGAAAACATCCAAAGGTCAGATCTACTACGTCTTCGATCTA-CTCTCCGTCGAATATGGAGA
376 ATGTGAAAACATCCAAAGGTCAGATCTACTACGTCTTCAATC-AGCTCTCCATCGAATATAGAGA
63804264 T
440 T
* **
63804265 GCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGACACCAAATCATCTTGGATCTGCT
1 GCCAAATCTGTTTCTTCGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTGGATCTGCT
*
63804330 TCAGTGTAAACACCTGAAGG
66 TCAGTGTAAACACCTAAAGG
63804350 CCNGGAGATG
Statistics
Matches: 464, Mismatches: 53, Indels: 33
0.84 0.10 0.06
Matches are distributed among these distances:
439 2 0.00
440 172 0.37
441 4 0.01
442 49 0.11
443 4 0.01
444 1 0.00
445 8 0.02
449 1 0.00
451 3 0.01
452 215 0.46
453 5 0.01
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.33
Consensus pattern (440 bp):
GCCAAATCTGTTTCTTCGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTGGATCTGCT
TCAGTGTAAACACCTAAAGGTCAGATCTACTATGTCTTCGATTTTCTCCTTGTAAACAAAAGAAT
GCCAAATCATCTTGGATACAATTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGA
TCTGCTCTCCATCAAATATAGAGATGCCAAATATGTTTCTTCAATCCGGTCTCTAACAATACAGA
GATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACGTAAACGTCAGATCTGCTATGTCCTTG
ATTTCCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTACTTCAATGTGAAAACATCCA
AAGGTCAGATCTACTACGTCTTCAATCAGCTCTCCATCGAATATAGAGAT
Found at i:63804420 original size:94 final size:93
Alignment explanation
Indices: 63804259--63804445 Score: 365
Period size: 94 Copynumber: 2.0 Consensus size: 93
63804249 CGTCGAATAT
63804259 GGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGACACCAAATCATCTTGGA
1 GGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGACACCAAATCATCTTGGA
63804324 TCTGCTTCAGTGTAAACACCTGAAGGCC
66 TCTGCTTCAGTGTAAACACCTGAAGGCC
63804352 NGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGACACCAAATCATCTTGG
1 -GGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGACACCAAATCATCTTGG
63804417 ATCTGCTTCAGTGTAAACACCTGAAGGCC
65 ATCTGCTTCAGTGTAAACACCTGAAGGCC
63804446 AAATCTACTA
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
94 93 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (93 bp):
GGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGACACCAAATCATCTTGGA
TCTGCTTCAGTGTAAACACCTGAAGGCC
Found at i:63804563 original size:89 final size:89
Alignment explanation
Indices: 63804403--63804853 Score: 757
Period size: 89 Copynumber: 5.1 Consensus size: 89
63804393 TACAGAGACA
* * * * * * *
63804403 CCAAATCATCTTGGATCTGCTTC-A-GTGTAAACA-CCTGAAGGCCAAATCTACTATGTCTTCGA
1 CCAAATCATCTTGAATCTGCTTCGATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTTCAA
* *
63804465 TTTGCTCCTTGTAAAC-CAAAGAATG
65 TTTTCTCCTTGTAAACAC-AAGGATG
* *
63804490 CAAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCAAT
1 CCAAATCATCTTGAATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCAAT
63804555 TTTCTCCTTGTAAACACAAGGATG
66 TTTCTCCTTGTAAACACAAGGATG
63804579 CCAAATCATCTTGAATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCAAT
1 CCAAATCATCTTGAATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCAAT
63804644 TTTCTCCTTGTAAACACAAGGATG
66 TTTCTCCTTGTAAACACAAGGATG
63804668 CCAAATCATCTTGAATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCAAT
1 CCAAATCATCTTGAATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCAAT
63804733 TTTCTCCTTGTAAACACAAGGATG
66 TTTCTCCTTGTAAACACAAGGATG
63804757 CCAAATCATCTTGAATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCAAT
1 CCAAATCATCTTGAATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCAAT
63804822 TTTCTCCTTGTAAACACAAGGATG
66 TTTCTCCTTGTAAACACAAGGATG
63804846 CCAAATCA
1 CCAAATCA
63804854 GTGGAGATGC
Statistics
Matches: 349, Mismatches: 11, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
87 22 0.06
88 1 0.00
89 323 0.93
90 3 0.01
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.31
Consensus pattern (89 bp):
CCAAATCATCTTGAATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCAAT
TTTCTCCTTGTAAACACAAGGATG
Found at i:63805237 original size:219 final size:219
Alignment explanation
Indices: 63804855--63805407 Score: 655
Period size: 219 Copynumber: 2.5 Consensus size: 219
63804845 GCCAAATCAG
* * * * *
63804855 TGGAGATGCCCAATCTGTTTCTTCAATCTGCTCTCTGACAATACAGAGATGCCAAATCATTTTGG
1 TGGAGATG-CAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGG
* * * * * *
63804920 CTCTACTTCAGT-GTAAGCACCTGAAGGTCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAAC
65 ATCTACTTCA-TAGTAAACAACTAAAGGTCAGATCTGCTATGTCTTCGATTTACTCCTTGTAAAC
* * * *
63804984 ACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTTAGAT-CTACTA
129 ACAAGAATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCCAAAGGTCAAATAAT-CTA
* *
63805048 TGTCTTCAATCTGCTCTA-ACTTGAA-A
193 TGTCTTCAATCTGCCCTACA-TCGAATA
* *
63805074 TGGAGATGTCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACGGAGATGGCAAATCATCTTGG
1 TGGAGATG-CAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGG
* * * *
63805139 ATCTACTTTATAGTAAACAACTAAAAGTCAGATCTGCTATGCCTTCGATTTACTTCTTGTAAACA
65 ATCTACTTCATAGTAAACAACTAAAGGTCAGATCTGCTATGTCTTCGATTTACTCCTTGTAAACA
* * *** *
63805204 CAATAATGCCAAATCATTTTGGATCTACTTCGATGTGAAATTGTGCAAAGGTCAAATAATCTATG
130 CAAGAATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCCAAAGGTCAAATAATCTATG
* * *
63805269 TCTTCGATCTTCCCTCCATCGAATA
195 TCTTCAATCTGCCCTACATCGAATA
* * * *
63805294 TAGAGATGCTAAATATGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAACCATCTCGG
1 TGGAGATGC-AAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGG
* * * * *
63805359 ATCTACTTCAGAGTAAATATCCAAAGGTCAGATCTGCAATGTCTTCGAT
65 ATCTACTTCATAGTAAACAACTAAAGGTCAGATCTGCTATGTCTTCGAT
63805408 CTGCTCTCCG
Statistics
Matches: 282, Mismatches: 47, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
218 1 0.00
219 180 0.64
220 101 0.36
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (219 bp):
TGGAGATGCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGA
TCTACTTCATAGTAAACAACTAAAGGTCAGATCTGCTATGTCTTCGATTTACTCCTTGTAAACAC
AAGAATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCCAAAGGTCAAATAATCTATGT
CTTCAATCTGCCCTACATCGAATA
Found at i:63805423 original size:131 final size:131
Alignment explanation
Indices: 63805266--63805506 Score: 356
Period size: 131 Copynumber: 1.8 Consensus size: 131
63805256 CAAATAATCT
* * * *
63805266 ATGTCTTCGATCTTCCCTCCATCGAATATAGAGATGCTAAATATGTTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCCCTCCATCGAATATAGAGATCCCAAATATGTTTCTTCGATTTGTTCCCTG
*
63805331 ACAATACAGAGATGCCAAACCATCTCGGATCTACTTCAGAGTAAATATCCAAAGGTCAGATCTGC
66 ACAAAACAGAGATGCCAAACCATCTCGGATCTACTTCAGAGTAAATATCCAAAGGTCAGATCTGC
63805396 A
131 A
* * * * *
63805397 ATGTCTTCGATCTGCTCTCCGTCGAATATGGTGATCCCAAATCTGTTTCTTCGATTTGTTCCCTG
1 ATGTCTTCGATCTGCCCTCCATCGAATATAGAGATCCCAAATATGTTTCTTCGATTTGTTCCCTG
* * * *
63805462 ACAAAACGGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAA
66 ACAAAACAGAGATGCCAAACCATCTCGGATCTACTTCAGAGTAAA
63805507 CACTTGAAGG
Statistics
Matches: 96, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
131 96 1.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.32
Consensus pattern (131 bp):
ATGTCTTCGATCTGCCCTCCATCGAATATAGAGATCCCAAATATGTTTCTTCGATTTGTTCCCTG
ACAAAACAGAGATGCCAAACCATCTCGGATCTACTTCAGAGTAAATATCCAAAGGTCAGATCTGC
A
Found at i:63805522 original size:131 final size:131
Alignment explanation
Indices: 63805266--63805538 Score: 350
Period size: 131 Copynumber: 2.1 Consensus size: 131
63805256 CAAATAATCT
* * * *
63805266 ATGTCTTCGATCTTCCCTCCATCGAATATAGAGATGCTAAATATGTTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCCCTCCATCGAATATAGAGATCCCAAATATGTTTCTTCGATTTGTTCCCTG
* * *
63805331 ACAATACAGAGATGCCAAACCATCTCGGATCTACTTCAGAGTAAATATCCAAAGGTCAGATCTGC
66 ACAAAACAGAGATGCCAAACCATCTCGGATCTACTTCAGAGTAAACATCCAAAGGCCAGATCTGC
63805396 A
131 A
* * * * *
63805397 ATGTCTTCGATCTGCTCTCCGTCGAATATGGTGATCCCAAATCTGTTTCTTCGATTTGTTCCCTG
1 ATGTCTTCGATCTGCCCTCCATCGAATATAGAGATCCCAAATATGTTTCTTCGATTTGTTCCCTG
* * * * **
63805462 ACAAAACGGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAACA-CTTGAAGGCCAGATCTG
66 ACAAAACAGAGATGCCAAACCATCTCGGATCTACTTCAGAGTAAACATC-CAAAGGCCAGATCTG
*
63805526 CT
130 CA
*
63805528 ATGTATTCGAT
1 ATGTCTTCGAT
63805539 TTGCACCTTG
Statistics
Matches: 121, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
130 1 0.01
131 120 0.99
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (131 bp):
ATGTCTTCGATCTGCCCTCCATCGAATATAGAGATCCCAAATATGTTTCTTCGATTTGTTCCCTG
ACAAAACAGAGATGCCAAACCATCTCGGATCTACTTCAGAGTAAACATCCAAAGGCCAGATCTGC
A
Found at i:63805739 original size:351 final size:350
Alignment explanation
Indices: 63804990--63805764 Score: 954
Period size: 351 Copynumber: 2.2 Consensus size: 350
63804980 AAACACAAGA
** * * *
63804990 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTTAGATCTACTATGTCTTC
1 ATGCCAAATCATCTTGGATCTTATTC-A-GTGTAAACATCCAAAGGTCAGATCTGCTATGTCTTC
* * ** * *
63805055 AATCTGCTCTAACTTGAAATGGAGATGTCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACGG
64 GATCTGCTCTAACTCGAAATGGAGATCCCAAATCTGTTTCTTCGATTTGTTCCCTGACAAAACGG
* * * *
63805120 AGATGGCAAATCATCTTGGATCTACTTTATAGTAAACAACTAAAAGTCAGATCTGCTATGCCTTC
129 AGATGCCAAATCATCTTGGATCTACTTCATAGTAAACAACTAAAAGCCAGATCTGCTATGCATTC
** * * * * * *** *
63805185 GATTTACTTCTTGTAAACACAATAATGCCAAATCATTTTGGATCTACTTCGATGTGAAATTGTGC
194 GATTTACACCTTGTAAACACAAGAAAGCAAAATCATCTTGGACCTACTTCGATGTGAAAACATCC
*
63805250 AAAGGTCAAATAATCTATGTCTTCGATCTTCCCTCCATCGAATATAGAGATGCTAAATATGTTTC
259 AAAGGTCAAATAATCTATGTCTTCGATCTGCCCTCCATCGAATATAGAGATGCTAAATATGTTTC
63805315 TTCGATTTGTTCTCTGACAATACAGAG
324 TTCGATTTGTTCTCTGACAATACAGAG
* * * * *
63805342 ATGCCAAACCATCTCGGATC-TACTTCAGAGTAAATATCCAAAGGTCAGATCTGCAATGTCTTCG
1 ATGCCAAATCATCTTGGATCTTA-TTCAGTGTAAACATCCAAAGGTCAGATCTGCTATGTCTTCG
* *
63805406 ATCTGCTCT-CCGTCGAATATGGTGATCCCAAATCTGTTTCTTCGATTTGTTCCCTGACAAAACG
65 ATCTGCTCTAAC-TCGAA-ATGGAGATCCCAAATCTGTTTCTTCGATTTGTTCCCTGACAAAACG
* * *
63805470 GAGATGCCAAATCATCTTGGATCTACTTCAGT-GTAAAC-ACTTGAAGGCCAGATCTGCTATGTA
128 GAGATGCCAAATCATCTTGGATCTACTTCA-TAGTAAACAAC-TAAAAGCCAGATCTGCTATGCA
* *
63805533 TTCGATTTGCACCTTGTAAACACAAGAAAGCAAAATCATCTTGGACCTGCTTCGATGTGAAAACA
191 TTCGATTTACACCTTGTAAACACAAGAAAGCAAAATCATCTTGGACCTACTTCGATGTGAAAACA
* * * * * * *
63805598 TCCAAAGGAT-AGAT-CTACTATGTCTTCGATCTGCTCTCCCTTGAATATGGAGATG-TCAAATC
256 TCCAAAGG-TCAAATAAT-CTATGTCTTCGATCTGCCCTCCATCGAATATAGAGATGCT-AAATA
63805660 TGTTTCTTCGATTTGTTCTCTGACAATACAGAG
318 TGTTTCTTCGATTTGTTCTCTGACAATACAGAG
* *
63805693 ATGCCAAATCATCTTGGATCTTATTTAGTGTAAACA-CCTGAAGGTCAGATCTGCTATGTCTTCG
1 ATGCCAAATCATCTTGGATCTTATTCAGTGTAAACATCC-AAAGGTCAGATCTGCTATGTCTTCG
*
63805757 ATTTGCTC
65 ATCTGCTC
63805765 CTTGTAAACA
Statistics
Matches: 359, Mismatches: 54, Indels: 21
0.83 0.12 0.05
Matches are distributed among these distances:
349 1 0.00
350 49 0.14
351 284 0.79
352 25 0.07
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (350 bp):
ATGCCAAATCATCTTGGATCTTATTCAGTGTAAACATCCAAAGGTCAGATCTGCTATGTCTTCGA
TCTGCTCTAACTCGAAATGGAGATCCCAAATCTGTTTCTTCGATTTGTTCCCTGACAAAACGGAG
ATGCCAAATCATCTTGGATCTACTTCATAGTAAACAACTAAAAGCCAGATCTGCTATGCATTCGA
TTTACACCTTGTAAACACAAGAAAGCAAAATCATCTTGGACCTACTTCGATGTGAAAACATCCAA
AGGTCAAATAATCTATGTCTTCGATCTGCCCTCCATCGAATATAGAGATGCTAAATATGTTTCTT
CGATTTGTTCTCTGACAATACAGAG
Found at i:63805759 original size:220 final size:219
Alignment explanation
Indices: 63805377--63806372 Score: 1519
Period size: 220 Copynumber: 4.5 Consensus size: 219
63805367 CAGAGTAAAT
* * *
63805377 ATCCAAAGGTCAGATCTGCAATGTCTTCGATCTGCTCTCCGTCGAATATGGTGATCCCAAATCTG
1 ATCCAAAGGT-AGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTG
* * *
63805442 TTTCTTCGATTTGTTCCCTGACAAAACGGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAA
65 TTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAA
*
63805507 CACTTGAAGGCCAGATCTGCTATGTATTCGATTTGCACCTTGTAAACACAAGAAAGCAAAATCAT
130 CACCTGAAGGCCAGATCTGCTATGTATTCGATTTGCACCTTGTAAACACAAGAAAGCAAAATCAT
63805572 CTTGGACCTGCTTCGATGTGAAAAC
195 CTTGGACCTGCTTCGATGTGAAAAC
* * * *
63805597 ATCCAAAGGATAGATCTACTATGTCTTCGATCTGCTCTCCCTTGAATATGGAGATGTCAAATCTG
1 ATCCAAAGG-TAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTG
*
63805662 TTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTTA-TTTAGTGTAA
65 TTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATC-TACTTCAGTGTAA
* * * * *
63805726 ACACCTGAAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCA
129 ACACCTGAAGGCCAGATCTGCTATGTATTCGATTTGCACCTTGTAAACACAAGAAAGCAAAATCA
*
63805791 TCTTGGATCTGCTTCGATGTGAAAAC
194 TCTTGGACCTGCTTCGATGTGAAAAC
* * * *
63805817 ATCCAAAGGATAGATCTACTATGTCTTCGATCTGCTCTCCCTTGAATATGGAGATGTCAAATCTG
1 ATCCAAAGG-TAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTG
*
63805882 TTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTTA-TTTAGTGTAA
65 TTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATC-TACTTCAGTGTAA
* * * * * * * *
63805946 ACACCTGAAGGTCAGATCTGCTATGTCTTCAATTTTCTCCTTGTAAACACAAGGATGCCAAATCA
129 ACACCTGAAGGCCAGATCTGCTATGTATTCGATTTGCACCTTGTAAACACAAGAAAGCAAAATCA
* *
63806011 TCTTGAATCTGCTTCGATGTGAAAAC
194 TCTTGGACCTGCTTCGATGTGAAAAC
* * *
63806037 ATCCAAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATAGAGATGCCAAATCAG
1 ATCCAAAGG-TAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTG
* *
63806102 TTTCTTCAATCTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAA
65 TTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAA
*
63806167 CACTTGAAGGCCAGATCTGCTATGTATTCGATTTGCACCTTGTAAACACAAGAAAGCAAAATCAT
130 CACCTGAAGGCCAGATCTGCTATGTATTCGATTTGCACCTTGTAAACACAAGAAAGCAAAATCAT
63806232 CTTGGACCTGCTTCGATGTGAAAAC
195 CTTGGACCTGCTTCGATGTGAAAAC
* * *
63806257 ATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATAGAGATGCCAAATCAG
1 ATCCAAAGGT-AGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTG
* *
63806322 TTTCTTCAATCTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATC
65 TTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATC
63806373 CATCTCGGAT
Statistics
Matches: 728, Mismatches: 44, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
219 3 0.00
220 722 0.99
221 3 0.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (219 bp):
ATCCAAAGGTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGT
TTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAAC
ACCTGAAGGCCAGATCTGCTATGTATTCGATTTGCACCTTGTAAACACAAGAAAGCAAAATCATC
TTGGACCTGCTTCGATGTGAAAAC
Found at i:63805853 original size:89 final size:87
Alignment explanation
Indices: 63805693--63805853 Score: 209
Period size: 89 Copynumber: 1.8 Consensus size: 87
63805683 CAATACAGAG
* * * * *
63805693 ATGCCAAATCATCTTGGATCTTATTTAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
1 ATGCCAAATCATCTTGGATCTGATTGAGTGAAAACACCTAAAGGTCAGATCTACTATGTCTTCGA
*
63805758 TTTGCTCCTTGTAAACACAAGA
66 TCTGCTCCTTGTAAACACAAGA
*
63805780 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCC-AAAGGAT-AGATCTACTATGTCT
1 ATGCCAAATCATCTTGGATCTGATT-GA-GTGAAAACA-CCTAAAGG-TCAGATCTACTATGTCT
63805843 TCGATCTGCTC
62 TCGATCTGCTC
63805854 TCCCTTGAAT
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
87 23 0.37
88 1 0.02
89 36 0.57
90 3 0.05
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (87 bp):
ATGCCAAATCATCTTGGATCTGATTGAGTGAAAACACCTAAAGGTCAGATCTACTATGTCTTCGA
TCTGCTCCTTGTAAACACAAGA
Found at i:63805959 original size:571 final size:570
Alignment explanation
Indices: 63804866--63805975 Score: 1640
Period size: 571 Copynumber: 1.9 Consensus size: 570
63804856 GGAGATGCCC
* * * *
63804866 AATCTGTTTCTTCAATCTGCTCTCTGACAATACAGAGATGCCAAATCATTTTGGCTCTACTTCAG
1 AATCTGTTTCTTCAATCTGCTCCCTGACAAAACAGAGATGCCAAATCATCTTGGATCTACTTCAG
* * * * * *
63804931 TGTAAGCACCTGAAGGTCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCA
66 TGTAAACACCTGAAGGCCAAATCTGCTATGTATTCGATTTGCACCTTGTAAACACAAGAAAGCAA
* *
63804996 AATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTTAGATCTACTATGTCTTCAATCTG
131 AATCATCTTGGACCTGCTTCGATGTGAAAACATCCAAAGGATAGATCTACTATGTCTTCAATCTG
* *
63805061 CTCTAACTTGAAATGGAGATGTCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACGGAGATGG
196 CTCTAACTTGAAATGGAGATGTCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGC
63805126 CAAATCATCTTGGATCTACTTTATAGTAAACAACTAAAAGTCAGATCTGCTATGCCTTCGATTTA
261 CAAATCATCTTGGATCTACTTTATAGTAAACAACTAAAAGTCAGATCTGCTATGCCTTCGATTTA
* * * *** *
63805191 CTTCTTGTAAACACAATAATGCCAAATCATTTTGGATCTACTTCGATGTGAAATTGTGCAAAGGT
326 CTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCCAAAGGT
*
63805256 CAAATAATCTATGTCTTCGATCTTCCCTCCATCGAATATAGAGATGCTAAATATGTTTCTTCGAT
391 CAAATAATCTATGTCTTCGATCTGCCCTCCATCGAATATAGAGATGCTAAATATGTTTCTTCGAT
*
63805321 TTGTTCTCTGACAATACAGAGATGCCAAACCATCTCGGATCTACTTCAGAGTAAATATCCAAAGG
456 TTGTTCTCTGACAATACAGAGATGCCAAACCATCTCGGATCTACTTCAGAGTAAACATCCAAAGG
63805386 TCAGATCTGCAATGTCTTCGATCTGCTCTCCGTCGAATATGGTGATCCCA
521 TCAGATCTGCAATGTCTTCGATCTGCTCTCCGTCGAATATGGTGATCCCA
* * * *
63805436 AATCTGTTTCTTCGATTTGTTCCCTGACAAAACGGAGATGCCAAATCATCTTGGATCTACTTCAG
1 AATCTGTTTCTTCAATCTGCTCCCTGACAAAACAGAGATGCCAAATCATCTTGGATCTACTTCAG
* *
63805501 TGTAAACACTTGAAGGCCAGATCTGCTATGTATTCGATTTGCACCTTGTAAACACAAGAAAGCAA
66 TGTAAACACCTGAAGGCCAAATCTGCTATGTATTCGATTTGCACCTTGTAAACACAAGAAAGCAA
*
63805566 AATCATCTTGGACCTGCTTCGATGTGAAAACATCCAAAGGATAGATCTACTATGTCTTCGATCTG
131 AATCATCTTGGACCTGCTTCGATGTGAAAACATCCAAAGGATAGATCTACTATGTCTTCAATCTG
**
63805631 CTCTCCCTTGAATATGGAGATGTCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATG
196 CTCTAACTTGAA-ATGGAGATGTCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATG
* * * *
63805696 CCAAATCATCTTGGATCTTA-TTTAGT-GTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGAT
260 CCAAATCATCTTGGATC-TACTTTA-TAGTAAACAACTAAAAGTCAGATCTGCTATGCCTTCGAT
* *
63805759 TTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAA
323 TTACTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCCAAA
* * * * * * *
63805824 GGAT-AGAT-CTACTATGTCTTCGATCTGCTCTCCCTTGAATATGGAGATG-TCAAATCTGTTTC
388 GG-TCAAATAAT-CTATGTCTTCGATCTGCCCTCCATCGAATATAGAGATGCT-AAATATGTTTC
* * * *
63805886 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTTA-TTTAGTGTAAACA-
450 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAACCATCTCGGATC-TACTTCAGAGTAAACAT
* *
63805949 CCTGAAGGTCAGATCTGCTATGTCTTC
514 CC-AAAGGTCAGATCTGCAATGTCTTC
63805976 AATTTTCTCC
Statistics
Matches: 481, Mismatches: 51, Indels: 15
0.88 0.09 0.03
Matches are distributed among these distances:
570 190 0.40
571 285 0.59
572 6 0.01
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (570 bp):
AATCTGTTTCTTCAATCTGCTCCCTGACAAAACAGAGATGCCAAATCATCTTGGATCTACTTCAG
TGTAAACACCTGAAGGCCAAATCTGCTATGTATTCGATTTGCACCTTGTAAACACAAGAAAGCAA
AATCATCTTGGACCTGCTTCGATGTGAAAACATCCAAAGGATAGATCTACTATGTCTTCAATCTG
CTCTAACTTGAAATGGAGATGTCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGC
CAAATCATCTTGGATCTACTTTATAGTAAACAACTAAAAGTCAGATCTGCTATGCCTTCGATTTA
CTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCCAAAGGT
CAAATAATCTATGTCTTCGATCTGCCCTCCATCGAATATAGAGATGCTAAATATGTTTCTTCGAT
TTGTTCTCTGACAATACAGAGATGCCAAACCATCTCGGATCTACTTCAGAGTAAACATCCAAAGG
TCAGATCTGCAATGTCTTCGATCTGCTCTCCGTCGAATATGGTGATCCCA
Found at i:63806477 original size:362 final size:362
Alignment explanation
Indices: 63806041--63806715 Score: 1233
Period size: 362 Copynumber: 1.9 Consensus size: 362
63806031 GAAAACATCC
*
63806041 AAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATAGAGATGCCAAATCAGTTTC
1 AAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATAGAGATGCCAAATCAGTTTC
63806106 TTCAATCTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAACACT
66 TTCAATCTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAACACT
63806171 TGAAGGCCAGATCTGCTATGTATTCGATTTGCACCTTGTAAACACAAGAAAGCAAAATCATCTTG
131 TGAAGGCCAGATCTGCTATGTATTCGATTTGCACCTTGTAAACACAAGAAAGCAAAATCATCTTG
*
63806236 GACCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCG
196 GACCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTATCCGTCG
*
63806301 AATATAGAGATGCCAAATCAGTTTCTTCAATCTGTTCTCTGACAATACAGAGATGCCAAATCATC
261 AATATAGAGATGCCAAATCAGTTTCTTCAATCTGTTATCTGACAATACAGAGATGCCAAATCATC
63806366 TTGGATCCATCTCGGATCTACTTCAGAGTAAACAACT
326 TTGGATCCATCTCGGATCTACTTCAGAGTAAACAACT
63806403 AAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATAGAGATGCCAAATCAGTTTC
1 AAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATAGAGATGCCAAATCAGTTTC
63806468 TTCAATCTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAACACT
66 TTCAATCTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAACACT
63806533 TGAAGGCCAGATCTGCTATGTATTCGATTTGCACCTTGTAAACACAAGAAAGCAAAATCATCTTG
131 TGAAGGCCAGATCTGCTATGTATTCGATTTGCACCTTGTAAACACAAGAAAGCAAAATCATCTTG
* * * *
63806598 GACCTGCTTCGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTGCTATTCGTTG
196 GACCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTATCCGTCG
* * * * * *
63806663 AATATGGGGATGCCAAATCTGTTTCTTCGATTTGTTATCTGACAATACTGAGA
261 AATATAGAGATGCCAAATCAGTTTCTTCAATCTGTTATCTGACAATACAGAGA
63806716 CACCAAAGAC
Statistics
Matches: 300, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
362 300 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (362 bp):
AAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATAGAGATGCCAAATCAGTTTC
TTCAATCTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAACACT
TGAAGGCCAGATCTGCTATGTATTCGATTTGCACCTTGTAAACACAAGAAAGCAAAATCATCTTG
GACCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTATCCGTCG
AATATAGAGATGCCAAATCAGTTTCTTCAATCTGTTATCTGACAATACAGAGATGCCAAATCATC
TTGGATCCATCTCGGATCTACTTCAGAGTAAACAACT
Found at i:63812386 original size:27 final size:27
Alignment explanation
Indices: 63812356--63812533 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 27
63812346 ATATCGAGCC
* *
63812356 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
63812383 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
63812410 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
* ** ** *
63812438 CGCACACTTAATGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
63812465 CGCACACTTAGTGC-ATCATATTCATGT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
63812492 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
63812519 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63812534 GTACAATTTA
Statistics
Matches: 124, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
27 100 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:63812497 original size:82 final size:81
Alignment explanation
Indices: 63812377--63812528 Score: 216
Period size: 82 Copynumber: 1.9 Consensus size: 81
63812367 TGCTATATAA
* * *
63812377 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
63812442 CACTTAATGCCGCATGG
65 CACTTAATGCCGCATGG
* * **
63812459 TCAATTCGCACACTTAGTG-CATCATATTCATGTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
63812523 CACTTA
65 CACTTA
63812529 GTGCTGTACA
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
81 15 0.24
82 47 0.76
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAATGCCGCATGG
Found at i:63818235 original size:39 final size:39
Alignment explanation
Indices: 63818192--63819109 Score: 1705
Period size: 39 Copynumber: 23.5 Consensus size: 39
63818182 GGACTAAGAT
*
63818192 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
63818231 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
63818270 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
63818309 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
63818348 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
63818387 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
63818426 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
63818465 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
63818504 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
63818543 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
63818582 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
63818621 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
63818660 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
63818699 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
63818738 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
63818777 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
63818816 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
63818855 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
63818894 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
63818933 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
63818972 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
* * * *
63819011 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAG-C
* * *
63819051 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTC
1 CCGAAGGCATTTGTACGAGA-TACTAAT-TCCGGGCTAAG-C
*
63819091 CCGAAGGCATTTGAACGAG
1 CCGAAGGCATTTGTACGAG
63819110 GAGCTATATT
Statistics
Matches: 863, Mismatches: 12, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
39 814 0.94
40 49 0.06
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (39 bp):
CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
Found at i:63827535 original size:50 final size:49
Alignment explanation
Indices: 63827462--63827654 Score: 198
Period size: 50 Copynumber: 4.0 Consensus size: 49
63827452 GGTCGATAGA
* * *
63827462 AAATCAAATATAATATCACATATGTGCATACCTATATGGTCAAATATGC
1 AAATCAAATATAACATCACATATGTGCATACCTATATGGCCAAATATTC
* * * *
63827511 AAGATCAAATTTAACATCA-A-ATATG--TACTTATATGGCCGAATATTC
1 AA-ATCAAATATAACATCACATATGTGCATACCTATATGGCCAAATATTC
* *
63827557 AAATTCAAATATAATATCACATTTGTGCATACCT-TCATGGCCAAATATTC
1 AAA-TCAAATATAACATCACATATGTGCATACCTAT-ATGGCCAAATATTC
* * * *
63827607 AAAATCCAATATAACATCACATATGTACATACCTATGTGGCCGAATAT
1 -AAATCAAATATAACATCACATATGTGCATACCTATATGGCCAAATAT
63827655 ATACAAGGAC
Statistics
Matches: 116, Mismatches: 19, Indels: 17
0.76 0.12 0.11
Matches are distributed among these distances:
45 1 0.01
46 32 0.28
47 1 0.01
48 7 0.06
49 4 0.03
50 67 0.58
51 4 0.03
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (49 bp):
AAATCAAATATAACATCACATATGTGCATACCTATATGGCCAAATATTC
Found at i:63836262 original size:19 final size:19
Alignment explanation
Indices: 63836227--63836264 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
63836217 TTGCAACTTA
*
63836227 AATTTTTATTTTCTTTTCT
1 AATTTTTATTTTATTTTCT
63836246 AATTTTTCA-TTTATTTTCT
1 AATTTTT-ATTTTATTTTCT
63836265 TCTGATAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.18, C:0.11, G:0.00, T:0.71
Consensus pattern (19 bp):
AATTTTTATTTTATTTTCT
Found at i:63848482 original size:41 final size:41
Alignment explanation
Indices: 63848238--63848476 Score: 299
Period size: 41 Copynumber: 5.8 Consensus size: 41
63848228 TTAAACAGAT
** * * *
63848238 TCACCGGCATTTTGCCTGCTAGGCTTAAAGCCTG-ATTCAGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAAT--GTA
* *
63848280 -CACCGGCACTT-AGCCTGCTAGACATATAGTCTGAAATGTA
1 TCACCGGCA-TTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
* *
63848320 TCACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
63848361 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
63848402 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTG-AAT-TA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
* *
63848441 CTTCACCGGCATTAAGCCTGCTAGACGTAACGTCTG
1 --TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTG
63848477 TATTACATTC
Statistics
Matches: 181, Mismatches: 10, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 2 0.01
40 8 0.04
41 167 0.92
42 4 0.02
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (41 bp):
TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
Found at i:63854549 original size:50 final size:50
Alignment explanation
Indices: 63854453--63854651 Score: 191
Period size: 50 Copynumber: 4.0 Consensus size: 50
63854443 TCAATTAGAG
* * * * *
63854453 AAAATCGAATATAATATCACATATGTGCATACATATATGGCCGAATATGC
1 AAAATCAAATATAACATCAAATATGTACATACATATATGGCCGAATATAC
* * * * *
63854503 AAGATCAAATTTAACATCAAATATGTACTTACTTATATGGCTGAATATAC
1 AAAATCAAATATAACATCAAATATGTACATACATATATGGCCGAATATAC
* * * * * * * * *
63854553 AAAATCAAATATAATATCACATTTGTGCATGCCTTTATGGCCAAATATTC
1 AAAATCAAATATAACATCAAATATGTACATACATATATGGCCGAATATAC
* * * *
63854603 AAAATCCAATATAACATCACATATGTACATACCTATGTGGCCGAATATA
1 AAAATCAAATATAACATCAAATATGTACATACATATATGGCCGAATATA
63854652 TACAAGGTCA
Statistics
Matches: 117, Mismatches: 32, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
50 117 1.00
ACGTcount: A:0.41, C:0.17, G:0.11, T:0.31
Consensus pattern (50 bp):
AAAATCAAATATAACATCAAATATGTACATACATATATGGCCGAATATAC
Found at i:63854627 original size:100 final size:100
Alignment explanation
Indices: 63854453--63854651 Score: 263
Period size: 100 Copynumber: 2.0 Consensus size: 100
63854443 TCAATTAGAG
* * * *
63854453 AAAATCGAATATAATATCACATATGTGCATACATATATGGCCGAATATGCAAGATCAAATTTAAC
1 AAAATCAAATATAATATCACATATGTGCATACATATATGGCCAAATATGCAAAATCAAATATAAC
* * *
63854518 ATCAAATATGTACTTACTTATATGGCTGAATATAC
66 ATCAAATATGTACATACCTATATGGCCGAATATAC
* * * * * *
63854553 AAAATCAAATATAATATCACATTTGTGCATGCCTTTATGGCCAAATATTCAAAATCCAATATAAC
1 AAAATCAAATATAATATCACATATGTGCATACATATATGGCCAAATATGCAAAATCAAATATAAC
* *
63854618 ATCACATATGTACATACCTATGTGGCCGAATATA
66 ATCAAATATGTACATACCTATATGGCCGAATATA
63854652 TACAAGGTCA
Statistics
Matches: 84, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
100 84 1.00
ACGTcount: A:0.41, C:0.17, G:0.11, T:0.31
Consensus pattern (100 bp):
AAAATCAAATATAATATCACATATGTGCATACATATATGGCCAAATATGCAAAATCAAATATAAC
ATCAAATATGTACATACCTATATGGCCGAATATAC
Found at i:63860298 original size:15 final size:13
Alignment explanation
Indices: 63860269--63860295 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
63860259 GCATAGACGG
63860269 GACACGCCCGTGT
1 GACACGCCCGTGT
63860282 GACACGCCCGTGT
1 GACACGCCCGTGT
63860295 G
1 G
63860296 TGATTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:63862384 original size:14 final size:13
Alignment explanation
Indices: 63862365--63862400 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
63862355 CAAGTAAGAT
63862365 ATAATAATATAAAA
1 ATAATAATAT-AAA
*
63862379 ATAATAATGTAAA
1 ATAATAATATAAA
63862392 ATAATAATA
1 ATAATAATA
63862401 ATAATAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (13 bp):
ATAATAATATAAA
Found at i:63862399 original size:16 final size:16
Alignment explanation
Indices: 63862343--63862402 Score: 54
Period size: 16 Copynumber: 3.8 Consensus size: 16
63862333 AATAATTAAT
*
63862343 AAATATATAATACAAGTA
1 AAATA-ATAATA-ATGTA
* *
63862361 AGAT-ATAATAATAT-
1 AAATAATAATAATGTA
63862375 AAA-AATAATAATGTA
1 AAATAATAATAATGTA
63862390 AAATAATAATAAT
1 AAATAATAATAAT
63862403 AATAATTTGC
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
14 11 0.32
15 5 0.15
16 15 0.44
18 3 0.09
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (16 bp):
AAATAATAATAATGTA
Found at i:63862463 original size:20 final size:19
Alignment explanation
Indices: 63862237--63862457 Score: 67
Period size: 19 Copynumber: 11.8 Consensus size: 19
63862227 CAATAAATGT
*
63862237 TATATAATAAA-ATATAATT
1 TATATAATAAATA-ATAATA
* *
63862256 TAAATATATAAGA-AATAAGA
1 TATATA-ATAA-ATAATAATA
* *
63862276 AATATAAGAAAT-ATAATA
1 TATATAATAAATAATAATA
63862294 TA-A-AATAACA-AA-AATA
1 TATATAATAA-ATAATAATA
* * *
63862310 TATAT-GT-AAGAACAATA
1 TATATAATAAATAATAATA
*
63862327 TATATAAATAATTAATAA-A
1 TATAT-AATAAATAATAATA
*
63862346 TATATAATACAAGTAAGATATAA
1 TATATAATA-AA-TAATA-AT-A
*
63862369 TAATATAA-AAATAATAATG
1 T-ATATAATAAATAATAATA
*
63862388 TAAAATAAT-AATAATAATA
1 T-ATATAATAAATAATAATA
* *** *
63862407 -ATTTGCGAAAAAAT-A-A
1 TATATAATAAATAATAATA
*
63862423 GATATAATAAATAATAATA
1 TATATAATAAATAATAATA
63862442 TATATAATAAAATAAT
1 TATATAAT-AAATAAT
63862458 CTTATAATGT
Statistics
Matches: 146, Mismatches: 32, Indels: 47
0.65 0.14 0.21
Matches are distributed among these distances:
15 1 0.01
16 14 0.10
17 26 0.18
18 17 0.12
19 40 0.27
20 30 0.21
21 7 0.05
22 2 0.01
23 3 0.02
24 6 0.04
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (19 bp):
TATATAATAAATAATAATA
Found at i:63864492 original size:210 final size:210
Alignment explanation
Indices: 63864067--63864622 Score: 736
Period size: 210 Copynumber: 2.7 Consensus size: 210
63864057 CTGCTTCTTT
* * * *
63864067 GATTTGTTCTCTGATAATACAGAGATGCCAAATTATCTTAGAATTT-CTTCATCGTAAGCACGTG
1 GATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAG-ATTTGCTTCATCGTAAACACGTG
* * * * *
63864131 AAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTG--TAAGCACA-AG-GAT--G--CCAAATC
65 AAAGCCAAATCAGCTATGTCTTCGATTTGCTCCCTGCCGAA-TACAGAGAGATAAGATCC--GTC
* * * *
63864188 ATCTTGGATCTTGCCTCAGTCTAATCGTCTGAAGGTCAGATCTACTGTGTATCTGCTCTCCATTG
127 ATCTTGGATC-TGCCTCAGACTAAACATCTGAAGGTCAGATCTACTATGTATCTGCTCTCCATTG
63864253 AAGTGGAGATGCCAGACTTC
191 AAGTGGAGATGCCAGACTTC
* *
63864273 GATTTGTTCTCTGACAATAAAGAGATGACAAATCATCTTAGATTTGCTTCATTGTAAACACGTGA
1 GATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
* * * *
63864338 AAGCCAATTCAGCTATGTTTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCCGTCCTCT
66 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCCTGCCGAATACAGAGAGATAAGATCCGTCATCT
* * * * *
63864403 TGGATCTGCTTCA-ACGTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGTTCTCCATTGAAGT
131 TGGATCTGCCTCAGAC-TAAACATCTGAAGGTCAGATCTACTATGTATCTGCTCTCCATTGAAGT
63864467 GGAGATGCCAGACTTC
195 GGAGATGCCAGACTTC
63864483 GATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
1 GATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
* * * *
63864548 AAGCCAAATCAGCTATATCTTCGATTTGCTCCCCGCCGAATATAGAGAGATAAGATCTGTCATCT
66 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCCTGCCGAATACAGAGAGATAAGATCCGTCATCT
63864613 TGGATCTGCC
131 TGGATCTGCC
63864623 CTGATGAAGG
Statistics
Matches: 305, Mismatches: 35, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
205 4 0.01
206 84 0.28
207 3 0.01
208 4 0.01
209 4 0.01
210 192 0.63
211 12 0.04
213 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (210 bp):
GATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
AAGCCAAATCAGCTATGTCTTCGATTTGCTCCCTGCCGAATACAGAGAGATAAGATCCGTCATCT
TGGATCTGCCTCAGACTAAACATCTGAAGGTCAGATCTACTATGTATCTGCTCTCCATTGAAGTG
GAGATGCCAGACTTC
Found at i:63870776 original size:53 final size:53
Alignment explanation
Indices: 63870691--63870792 Score: 186
Period size: 53 Copynumber: 1.9 Consensus size: 53
63870681 CTTGTTAGGG
*
63870691 AAAGGATTGGGTTTATGAATGACTATTTTGGGCCCAGTTTGCGACATCGGGTC
1 AAAGAATTGGGTTTATGAATGACTATTTTGGGCCCAGTTTGCGACATCGGGTC
*
63870744 AAAGAATTGGGTTTATGAATGACTATTTTGGGCCCAGTTTGTGACATCG
1 AAAGAATTGGGTTTATGAATGACTATTTTGGGCCCAGTTTGCGACATCG
63870793 CTTCATTATT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.25, C:0.14, G:0.28, T:0.33
Consensus pattern (53 bp):
AAAGAATTGGGTTTATGAATGACTATTTTGGGCCCAGTTTGCGACATCGGGTC
Found at i:63872763 original size:15 final size:15
Alignment explanation
Indices: 63872721--63872770 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
63872711 ATAACTTTGA
*
63872721 ATGCAAATG-ATGTG
1 ATGCAAATGCATGAG
63872735 ATG-AAATGCTATGAG
1 ATGCAAATGC-ATGAG
63872750 ATGCAAATGCATGA-
1 ATGCAAATGCATGAG
63872764 ATGCAAA
1 ATGCAAA
63872771 AAGAATATCG
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.31
15 11 0.34
16 6 0.19
ACGTcount: A:0.42, C:0.10, G:0.24, T:0.24
Consensus pattern (15 bp):
ATGCAAATGCATGAG
Found at i:63887168 original size:19 final size:20
Alignment explanation
Indices: 63887131--63887174 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
63887121 CGAGCCTATT
63887131 CCTCGTAAACTTTGTTTTTC
1 CCTCGTAAACTTTGTTTTTC
63887151 CCTCGTAAACTTTGTTTTTC
1 CCTCGTAAACTTTGTTTTTC
63887171 CCTC
1 CCTC
63887175 AATCACGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.14, C:0.30, G:0.09, T:0.48
Consensus pattern (20 bp):
CCTCGTAAACTTTGTTTTTC
Found at i:63896828 original size:43 final size:42
Alignment explanation
Indices: 63896762--63896850 Score: 117
Period size: 43 Copynumber: 2.1 Consensus size: 42
63896752 AGCTTGTACC
* * *
63896762 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACAGGGTCTTACACGAAATCAAATAT-G
*
63896805 ATGCC-ACTGTCCCAGATAGGGTCTTACACGAAATCAAATATG
1 ATGCCAAC-GTCCCAGACAGGGTCTTACACGAAATCAAATATG
63896847 ATGC
1 ATGC
63896851 TGATGTTCCA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
42 7 0.17
43 34 0.83
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACAGGGTCTTACACGAAATCAAATATG
Found at i:63899237 original size:42 final size:42
Alignment explanation
Indices: 63899135--63899279 Score: 139
Period size: 42 Copynumber: 3.4 Consensus size: 42
63899125 AGCTCGTACA
* * ** * *
63899135 ATGCCAAAGTCCCAGACGAGGTCTTACATGTAATTGAATATCG
1 ATGCCAATGTCCCAGACAAGGTCTTACACATAAAT-CATATCG
*
63899178 ATGCCACTGTCCCAGACAAGGTCTTACACA-AAATCATATACG
1 ATGCCAATGTCCCAGACAAGGTCTTACACATAAATCATAT-CG
* * * *
63899220 ATGCCAATGTCCTAGACATGGTCTTACACATAAATCTCAAATCA
1 ATGCCAATGTCCCAGACAAGGTCTTACACATAAA--TCATATCG
*
63899264 ATGCCAACGTCCCAGA
1 ATGCCAATGTCCCAGA
63899280 TGTGGCCTTA
Statistics
Matches: 84, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
41 4 0.05
42 32 0.38
43 28 0.33
44 15 0.18
45 5 0.06
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.23
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAAGGTCTTACACATAAATCATATCG
Found at i:63910525 original size:12 final size:12
Alignment explanation
Indices: 63910510--63910575 Score: 71
Period size: 12 Copynumber: 5.4 Consensus size: 12
63910500 AAGAAACATT
*
63910510 ATCAGAACTAGA
1 ATCAGAATTAGA
*
63910522 ATCAAAATTAGA
1 ATCAGAATTAGA
63910534 ATCAGAATTAG-
1 ATCAGAATTAGA
* *
63910545 GTGACAGAATCAGA
1 AT--CAGAATTAGA
63910559 ATCAGAATTAGA
1 ATCAGAATTAGA
63910571 ATCAG
1 ATCAG
63910576 TATCAAGTAA
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
11 1 0.02
12 34 0.77
13 8 0.18
14 1 0.02
ACGTcount: A:0.48, C:0.12, G:0.18, T:0.21
Consensus pattern (12 bp):
ATCAGAATTAGA
Found at i:63910593 original size:31 final size:31
Alignment explanation
Indices: 63910558--63910635 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
63910548 ACAGAATCAG
*
63910558 AATCAGAATTAGAATCAGTATCAAGTAACAA
1 AATCAAAATTAGAATCAGTATCAAGTAACAA
* * * * *
63910589 AATCAAAATCATAATCAGTATTAGGTAACAG
1 AATCAAAATTAGAATCAGTATCAAGTAACAA
63910620 AATCAAAAATTAGAAT
1 AATC-AAAATTAGAAT
63910636 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
31 29 0.76
32 9 0.24
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.24
Consensus pattern (31 bp):
AATCAAAATTAGAATCAGTATCAAGTAACAA
Found at i:63910593 original size:37 final size:37
Alignment explanation
Indices: 63910519--63910599 Score: 99
Period size: 37 Copynumber: 2.2 Consensus size: 37
63910509 TATCAGAACT
* * * *
63910519 AGAATCAAAATTAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAAAATTAGAATCAGAATCAAGTAACAAAATC
* *
63910556 AGAATCAGAATTAGAATCAGTATCAAGTAACAAAATC
1 AGAATCAAAATTAGAATCAGAATCAAGTAACAAAATC
*
63910593 AAAATCA
1 AGAATCA
63910600 TAATCAGTAT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.52, C:0.12, G:0.15, T:0.21
Consensus pattern (37 bp):
AGAATCAAAATTAGAATCAGAATCAAGTAACAAAATC
Found at i:63910814 original size:27 final size:26
Alignment explanation
Indices: 63910772--63910871 Score: 128
Period size: 27 Copynumber: 3.7 Consensus size: 26
63910762 GCTCAGTTAT
* *
63910772 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
63910799 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
63910825 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
63910853 CAGATAATGTGGCAAAGCC
1 CAGATATTGTGGCAGAGCC
63910872 GCTTAACAGA
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
26 7 0.11
27 51 0.77
28 8 0.12
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:63911068 original size:22 final size:22
Alignment explanation
Indices: 63911032--63911096 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
63911022 GCAAATACGT
63911032 TTGGCACACAA-CCATAATCAGG
1 TTGGCACA-AAGCCATAATCAGG
* *
63911054 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
* *
63911076 TTGACAGAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
63911097 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 29 0.85
23 2 0.06
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:63911579 original size:27 final size:27
Alignment explanation
Indices: 63911523--63911716 Score: 219
Period size: 27 Copynumber: 7.2 Consensus size: 27
63911513 GGGCAAAATG
* * * * *
63911523 GTAATTTTACCCCACA-AGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
63911549 GTAATTCCACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
63911576 GTAATTCTACCCTACAGAGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
63911603 GTAATTCTACCCTACAGGGGTATTGCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * **
63911630 ATAATTCTACCCTACAAGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
63911657 GTAATTCTACCCTGCAGGGGTATTCCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
63911684 GTAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
63911711 GTAATT
1 GTAATT
63911717 TTGTAAATCG
Statistics
Matches: 138, Mismatches: 29, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
26 13 0.09
27 125 0.91
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:63911609 original size:54 final size:53
Alignment explanation
Indices: 63911523--63911716 Score: 253
Period size: 54 Copynumber: 3.6 Consensus size: 53
63911513 GGGCAAAATG
* * * * **
63911523 GTAATTTTACCCCACAAGGTATCTCGGTAATTCCACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGTATTTCGGTAATTCTACCCTACAGGGGTATTCCA
*
63911576 GTAATTCTACCCTACAGAGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCA
1 GTAATTCTACCCTACA-AGGTATTTCGGTAATTCTACCCTACAGGGGTATTCCA
* * *
63911630 ATAATTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTGCAGGGGTATTCCA
1 GTAATTCTACCCTACAA-GGTATTTCGGTAATTCTACCCTACAGGGGTATTCCA
* *
63911684 GTAATTCTACCTTACAGGGGTATTTCGGTAATT
1 GTAATTCTACCCTACA-AGGTATTTCGGTAATT
63911717 TTGTAAATCG
Statistics
Matches: 124, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
53 15 0.12
54 109 0.88
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.34
Consensus pattern (53 bp):
GTAATTCTACCCTACAAGGTATTTCGGTAATTCTACCCTACAGGGGTATTCCA
Found at i:63911716 original size:81 final size:81
Alignment explanation
Indices: 63911523--63911716 Score: 246
Period size: 81 Copynumber: 2.4 Consensus size: 81
63911513 GGGCAAAATG
* * * * *
63911523 GTAATTTTACCCCACA-AGGTATCTCGGTAATTCCACCCTACAGGGGTATTTTAGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCCACCCTACAAGGGTATTTTAGTAATTCTACC
* *
63911587 CTACAGAGGTATTTCG
66 CTACAGAGGTATTCCA
* ** * *
63911603 GTAATTCTACCCTACAGGGGTATTGCAATAATTCTACCCTACAAGGGTATTTTGGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCCACCCTACAAGGGTATTTTAGTAATTCTACC
* *
63911668 CTGCAGGGGTATTCCA
66 CTACAGAGGTATTCCA
*
63911684 GTAATTCTACCTTACAGGGGTATTTCGGTAATT
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATT
63911717 TTGTAAATCG
Statistics
Matches: 95, Mismatches: 18, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
80 14 0.15
81 81 0.85
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.34
Consensus pattern (81 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTAATTCCACCCTACAAGGGTATTTTAGTAATTCTACC
CTACAGAGGTATTCCA
Found at i:63911739 original size:27 final size:27
Alignment explanation
Indices: 63911709--63911786 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 27
63911699 AGGGGTATTT
*
63911709 CGGTAATTTTGTAAATCGAGGGTAAAA
1 CGGTAATTTTATAAATCGAGGGTAAAA
* * ***
63911736 CGGTAATTCTATAAATCAAGGGTACTT
1 CGGTAATTTTATAAATCGAGGGTAAAA
* *
63911763 TGGTAATTTTATAAGTCGAGGGTA
1 CGGTAATTTTATAAATCGAGGGTA
63911787 TTTCAATAAT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.33, C:0.09, G:0.24, T:0.33
Consensus pattern (27 bp):
CGGTAATTTTATAAATCGAGGGTAAAA
Found at i:63911796 original size:27 final size:27
Alignment explanation
Indices: 63911766--63911857 Score: 87
Period size: 27 Copynumber: 3.4 Consensus size: 27
63911756 GGTACTTTGG
*
63911766 TAATTTTATAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
* * *
63911793 TAATTTTACAGGTCGAGGGTATTTTAG
1 TAATTTTACAAGTCGAGGGTATTTCAA
* * ***
63911820 TAATTTCACAAATC-ATGGGTATTTTTG
1 TAATTTTACAAGTCGA-GGGTATTTCAA
63911847 TAATTTTACAA
1 TAATTTTACAA
63911858 ACTAGGGGTA
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 1 0.02
27 54 0.98
ACGTcount: A:0.32, C:0.09, G:0.17, T:0.42
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTATTTCAA
Found at i:63911823 original size:81 final size:80
Alignment explanation
Indices: 63911737--63912176 Score: 461
Period size: 81 Copynumber: 5.4 Consensus size: 80
63911727 AGGGTAAAAC
* * * * * *
63911737 GGTAATTCTATAAATCAAGGGTACTTTGGTAATTTTATAAGTC-GAGGGTATTTCAATAATTTTA
1 GGTAATTTTACAAA-CAAGGGTATTTTGGTAATTTTATAA-ACAAAGGGTATTTTAATAATTTTA
** *
63911801 C-AGGTCGAGGGTATTTT
64 CAAACTAG-GGGTATTTT
* * * * * * * * *
63911818 AGTAATTTCACAAATCATGGGTATTTTTGTAATTTTACAAACTAGGGGTATTTTGATGATTTTAC
1 GGTAATTTTACAAA-CAAGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAATAATTTTAC
63911883 AAACTAGGGGTATTTT
65 AAACTAGGGGTATTTT
* *
63911899 GGTAATTTTACAAACCAGAGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTAC
1 GGTAATTTTACAAACAAG-GGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAATAATTTTAC
63911964 AAACTAGGGGTATTTT
65 AAACTAGGGGTATTTT
* *
63911980 GGTAATTTTACAAACCAGAGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTAC
1 GGTAATTTTACAAACAAG-GGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAATAATTTTAC
63912045 AAACTAGGGGTATTTT
65 AAACTAGGGGTATTTT
** * * * * ** * *
63912061 GGTAATTTTGTAAACCAAGGGTATTTTGGTAAATTTACAAACCAGGGGTATTTTGGTGATTTTAT
1 GGTAATTTTACAAA-CAAGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAATAATTTTAC
* *
63912126 AAACCAAGGGTATTTT
65 AAACTAGGGGTATTTT
* * *
63912142 AGTAATTTTATAAACCAGGGGTATTTTGGTAATTT
1 GGTAATTTTACAAA-CAAGGGTATTTTGGTAATTT
63912177 GGTAAACTAA
Statistics
Matches: 311, Mismatches: 44, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
80 3 0.01
81 302 0.97
82 6 0.02
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (80 bp):
GGTAATTTTACAAACAAGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAATAATTTTACA
AACTAGGGGTATTTT
Found at i:63912183 original size:27 final size:27
Alignment explanation
Indices: 63911809--63912176 Score: 466
Period size: 27 Copynumber: 13.6 Consensus size: 27
63911799 TACAGGTCGA
* * * *
63911809 GGGTATTTTAGTAATTTCACAAATCAT
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
63911836 GGGTATTTTTGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
63911863 GGGTATTTTGATGATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
63911890 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * *
63911917 AGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
63911944 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
63911971 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * *
63911998 AGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
63912025 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
63912052 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
63912079 GGGTATTTTGGTAAATTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
63912106 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
63912133 GGGTATTTTAGTAATTTTATAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
63912160 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
63912177 GGTAAACTAA
Statistics
Matches: 293, Mismatches: 48, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 293 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:63918821 original size:43 final size:43
Alignment explanation
Indices: 63918755--63918913 Score: 173
Period size: 43 Copynumber: 3.7 Consensus size: 43
63918745 AGCTCGTACA
*
63918755 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATATCG
1 ATGCCAACGTCCCAGACAGGGTCTTACACGTAATCAAATATCG
* * *
63918798 ATGCC-ACTGTCCCAGACAGGGTCTTAAACGAAATCAAATA-CA
1 ATGCCAAC-GTCCCAGACAGGGTCTTACACGTAATCAAATATCG
* * * * *
63918840 ATGTCGATGTCCCAGACATGGTCTTACACGTAAATCATAA-GTCG
1 ATGCCAACGTCCCAGACAGGGTCTTACACGT-AATCA-AATATCG
63918884 ATGCCAACGTCCCAGAC-GTGGTCTTACACG
1 ATGCCAACGTCCCAGACAG-GGTCTTACACG
63918914 AGAACACATC
Statistics
Matches: 95, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
42 27 0.28
43 40 0.42
44 28 0.29
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACACGTAATCAAATATCG
Found at i:63924630 original size:21 final size:22
Alignment explanation
Indices: 63924606--63924646 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
63924596 TAGCATCATC
*
63924606 ACCAAA-ACAGTTAAAACCATA
1 ACCAAACACAGTCAAAACCATA
*
63924627 ACCAAACATAGTCAAAACCA
1 ACCAAACACAGTCAAAACCA
63924647 AACTCAGAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.56, C:0.27, G:0.05, T:0.12
Consensus pattern (22 bp):
ACCAAACACAGTCAAAACCATA
Found at i:63927117 original size:42 final size:41
Alignment explanation
Indices: 63927057--63927195 Score: 136
Period size: 42 Copynumber: 3.3 Consensus size: 41
63927047 GTCCCAGACG
** *
63927057 TGGTCTTACATGGGATCTCACATCGATGCCATATCTAAGATA
1 TGGTCTTACATGAAATCTCATATCGATGCCATATCT-AGATA
* * * * * *
63927099 TGGTCTTATATGAAATCTCATTTCGATGACATGTCCTTGATG
1 TGGTCTTACATGAAATCTCATATCGATGCCATAT-CTAGATA
* *
63927141 TGGTCTTACACGAAATCTCATATC-AGCGCCATATCTCAGATA
1 TGGTCTTACATGAAATCTCATATCGA-TGCCATATCT-AGATA
63927183 TGGTCTTACATGA
1 TGGTCTTACATGA
63927196 TAACACATAC
Statistics
Matches: 76, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
41 3 0.04
42 71 0.93
43 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (41 bp):
TGGTCTTACATGAAATCTCATATCGATGCCATATCTAGATA
Found at i:63929847 original size:47 final size:48
Alignment explanation
Indices: 63929772--63929903 Score: 158
Period size: 47 Copynumber: 2.8 Consensus size: 48
63929762 CTCAGTCGAT
* * * *
63929772 AAGTACCTATACCATGGCCCATAACCAAATCAAGGTAATTTATCT-CG
1 AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCTCCA
* * * * *
63929819 GAGTACCTATACTATGGCCCCTAGCCAAATTAAGGTAACTCCTCTCCA
1 AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCTCCA
* *
63929867 AAATACCTATACCATGGCCCGTAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTA
63929904 TAACTCGCAC
Statistics
Matches: 70, Mismatches: 14, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
47 37 0.53
48 33 0.47
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.23
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCTCCA
Found at i:63930041 original size:21 final size:22
Alignment explanation
Indices: 63930015--63930065 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 22
63930005 TTTCCAATAC
*
63930015 CAAATCATAGTCGAATCA-TTT
1 CAAATCATAGTAGAATCATTTT
*
63930036 CAAATCATTGTAGAATCATTTT
1 CAAATCATAGTAGAATCATTTT
63930058 CAAATCAT
1 CAAATCAT
63930066 GGTCCAACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 16 0.59
22 11 0.41
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (22 bp):
CAAATCATAGTAGAATCATTTT
Found at i:63930926 original size:58 final size:58
Alignment explanation
Indices: 63930836--63930951 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
63930826 TTTTTTTTAT
*
63930836 TTTATTAACCTTTATTTGTCTTATTACTAATTTACCATTAAAAATAATGCTTATTCAC
1 TTTATTAACCTTTATTTGTCTTATTACTAATTTACCATTAAAAATAATGCATATTCAC
63930894 TTTATTAACCTTTATTTGTCTTATTACTAATTTACCATTAAAAATAATGCATATTCAC
1 TTTATTAACCTTTATTTGTCTTATTACTAATTTACCATTAAAAATAATGCATATTCAC
63930952 ACAAATGCCA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.34, C:0.16, G:0.03, T:0.47
Consensus pattern (58 bp):
TTTATTAACCTTTATTTGTCTTATTACTAATTTACCATTAAAAATAATGCATATTCAC
Found at i:63935357 original size:11 final size:11
Alignment explanation
Indices: 63935341--63935365 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
63935331 ATATGATATT
63935341 TTATTATTTTA
1 TTATTATTTTA
63935352 TTATTATTTTA
1 TTATTATTTTA
63935363 TTA
1 TTA
63935366 GTATATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:63935797 original size:46 final size:45
Alignment explanation
Indices: 63935730--63935821 Score: 148
Period size: 46 Copynumber: 2.0 Consensus size: 45
63935720 GTCTTCTTAT
63935730 ATAAGGTAATATGATATTGATGAGTTAGTGTAGGGAAATAGGAGA
1 ATAAGGTAATATGATATTGATGAGTTAGTGTAGGGAAATAGGAGA
** *
63935775 NATAAGGTTCTATGATCTTGATGAGTTAGTGTAGGGAAATAGGAGA
1 -ATAAGGTAATATGATATTGATGAGTTAGTGTAGGGAAATAGGAGA
63935821 A
1 A
63935822 AGTGATGAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
45 1 0.02
46 42 0.98
ACGTcount: A:0.37, C:0.02, G:0.30, T:0.29
Consensus pattern (45 bp):
ATAAGGTAATATGATATTGATGAGTTAGTGTAGGGAAATAGGAGA
Found at i:63939606 original size:27 final size:27
Alignment explanation
Indices: 63939553--63939611 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
63939543 GCATCTAATA
*
63939553 CTGATTCTGTATTGGGCTAAGGCCCAC
1 CTGATTCTGTAATGGGCTAAGGCCCAC
63939580 CTGATTCTGTTAATGGGCTAAGG-CCAC
1 CTGATTCTG-TAATGGGCTAAGGCCCAC
63939607 CTGAT
1 CTGAT
63939612 ACTATTTCTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 18 0.60
28 12 0.40
ACGTcount: A:0.20, C:0.24, G:0.25, T:0.31
Consensus pattern (27 bp):
CTGATTCTGTAATGGGCTAAGGCCCAC
Found at i:63950646 original size:40 final size:40
Alignment explanation
Indices: 63950562--63950745 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
63950552 TTGAATGCTG
* * * *
63950562 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
63950601 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
63950642 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
63950682 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
63950722 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
63950746 GTATGAGTTA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.02
40 113 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:63950699 original size:80 final size:81
Alignment explanation
Indices: 63950562--63950742 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
63950552 TTGAATGCTG
* *
63950562 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
63950626 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
63950642 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
63950703 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
63950722 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
63950743 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:63951337 original size:93 final size:93
Alignment explanation
Indices: 63951178--63951363 Score: 345
Period size: 93 Copynumber: 2.0 Consensus size: 93
63951168 TTTTTGGTTC
*
63951178 TCCAGCTATCGGACTCGGGATCTTGAAGTCGAAGTCACCCACACTATCAAAGGCTCTTTTGGGTA
1 TCCAGCTATCGGACTCAGGATCTTGAAGTCGAAGTCACCCACACTATCAAAGGCTCTTTTGGGTA
63951243 CTCTTTTGGTTGAATTTTGATATGGCAT
66 CTCTTTTGGTTGAATTTTGATATGGCAT
* *
63951271 TCCAGCTATCGGACTCAGGATCTTGAAGTCGAAGTCGCCCACACTATCAATGGCTCTTTTGGGTA
1 TCCAGCTATCGGACTCAGGATCTTGAAGTCGAAGTCACCCACACTATCAAAGGCTCTTTTGGGTA
63951336 CTCTTTTGGTTGAATTTTGATATGGCAT
66 CTCTTTTGGTTGAATTTTGATATGGCAT
63951364 GTATAGGACG
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 90 1.00
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.34
Consensus pattern (93 bp):
TCCAGCTATCGGACTCAGGATCTTGAAGTCGAAGTCACCCACACTATCAAAGGCTCTTTTGGGTA
CTCTTTTGGTTGAATTTTGATATGGCAT
Found at i:63958556 original size:40 final size:38
Alignment explanation
Indices: 63958506--63958858 Score: 206
Period size: 40 Copynumber: 8.7 Consensus size: 38
63958496 TTGAATGCTG
* *
63958506 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGC-GAGT-AATAAA
* *
63958546 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGG-CTTTGTGCGAG-TAATAAA
* * *
63958586 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCGAG-TAATAAA
* * * **
63958626 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACCAAA
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCGAG-TAATAAA
* *
63958665 ACCGGGC-AATGTCCCGAAGGCATTGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGCTAA-GT-CC-----C---GAAGG-CTTTGTGCGAG-TAATAAA
* * *
63958714 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCGAG-TAATAAA
* * **
63958754 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCGAG-TAATAAA
* * * * *
63958794 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCGAG-TAATAAA
* *
63958833 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGC-TTTG
63958859 AACGAGGAGC
Statistics
Matches: 259, Mismatches: 35, Indels: 38
0.78 0.11 0.11
Matches are distributed among these distances:
38 2 0.01
39 55 0.21
40 159 0.61
41 10 0.04
43 1 0.00
45 1 0.00
48 7 0.03
49 22 0.08
50 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (38 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCGAGTAATAAA
Found at i:63958726 original size:128 final size:129
Alignment explanation
Indices: 63958561--63958818 Score: 446
Period size: 128 Copynumber: 2.0 Consensus size: 129
63958551 ACTAAGATCC
63958561 GAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 GAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
63958626 TCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACCAAAACCGGGCAATGTCCCGAAGGCATT
66 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACCAAAACCGGGCAATGTCCCGAAGGCATT
63958689 GAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 GAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*** * **
63958754 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATT
66 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACCAAAACCGGGCAATGTCCCGAAGGCATT
63958818 G
1 G
63958819 TGTGAGTTAC
Statistics
Matches: 122, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
128 89 0.73
129 33 0.27
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (129 bp):
GAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACCAAAACCGGGCAATGTCCCGAAGGCATT
Found at i:63958876 original size:79 final size:80
Alignment explanation
Indices: 63958709--63958891 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
63958699 GTGCGAGATA
* * *
63958709 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
63958774 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
63958789 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
63958853 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
63958868 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
63958892 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:63959103 original size:88 final size:88
Alignment explanation
Indices: 63958954--63959129 Score: 334
Period size: 88 Copynumber: 2.0 Consensus size: 88
63958944 AAAACATCCC
63958954 AATATGGGGAGATGTTACGTATGTGTAGAATTTAATCGAGCCCTTACAAATAAATGTTCGCTCAG
1 AATATGGGGAGATGTTACGTATGTGTAGAATTTAATCGAGCCCTTACAAATAAATGTTCGCTCAG
63959019 TTGATAAACGAGCTACCGGCCTT
66 TTGATAAACGAGCTACCGGCCTT
* *
63959042 AATATGGGGATATGTTACGTATGTGTTGAATTTAATCGAGCCCTTACAAATAAATGTTCGCTCAG
1 AATATGGGGAGATGTTACGTATGTGTAGAATTTAATCGAGCCCTTACAAATAAATGTTCGCTCAG
63959107 TTGATAAACGAGCTACCGGCCTT
66 TTGATAAACGAGCTACCGGCCTT
63959130 CGGCTAAGTT
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
88 86 1.00
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (88 bp):
AATATGGGGAGATGTTACGTATGTGTAGAATTTAATCGAGCCCTTACAAATAAATGTTCGCTCAG
TTGATAAACGAGCTACCGGCCTT
Found at i:63960953 original size:27 final size:26
Alignment explanation
Indices: 63960917--63960973 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
63960907 TATATATATT
*
63960917 TCTGTTCTGGTGGCCTAGCCACAATA
1 TCTGTTCTGGTGACCTAGCCACAATA
* * *
63960943 TCTGTATCTGGTGACTTCGTCACAATA
1 TCTGT-TCTGGTGACCTAGCCACAATA
63960970 TCTG
1 TCTG
63960974 GCAGCCTCGC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 5 0.19
27 21 0.81
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGTTCTGGTGACCTAGCCACAATA
Found at i:63967631 original size:27 final size:27
Alignment explanation
Indices: 63967587--63967652 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
63967577 TGGATAAGTT
*
63967587 GTAGAATTACTAAAATACCCCTATAGG
1 GTAGAATTACCAAAATACCCCTATAGG
* * * *
63967614 GTAGAATTACCAAGATACCCTTGTGGG
1 GTAGAATTACCAAAATACCCCTATAGG
*
63967641 GTAAAATTACCA
1 GTAGAATTACCA
63967653 TTTTGCCCCT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCAAAATACCCCTATAGG
Found at i:63968332 original size:27 final size:26
Alignment explanation
Indices: 63968302--63968353 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
63968292 CTCGCTGTAA
*
63968302 TCTAGTGGCCTCGCCACATATATCTGT
1 TCTAGTGACCTCGCCACA-ATATCTGT
* *
63968329 TCTAGTGACTTCGTCACAATATCTG
1 TCTAGTGACCTCGCCACAATATCTG
63968354 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.35
Consensus pattern (26 bp):
TCTAGTGACCTCGCCACAATATCTGT
Found at i:63981676 original size:34 final size:34
Alignment explanation
Indices: 63981638--63981812 Score: 92
Period size: 34 Copynumber: 5.1 Consensus size: 34
63981628 TCCATAAAAA
63981638 TAGAAGGTGCATTCGTTAATCCGAAAGGCATAAC
1 TAGAAGGTGCATTCGTTAATCCGAAAGGCATAAC
** * * * ** *
63981672 TAGAAACT-CATTCGATTCAT--TAGATCCATAAAAA
1 TAGAAGGTGCATTCG-TTAATCCGAAAGGCAT--AAC
*
63981706 TTGAAGGTGCATTCGTTAATCCGAAAGGCATAAC
1 TAGAAGGTGCATTCGTTAATCCGAAAGGCATAAC
** * * * ** *
63981740 TAGAAACT-CATTCGATTCAT--TAGATCCATAAAAA
1 TAGAAGGTGCATTCG-TTAATCCGAAAGGCAT--AAC
*
63981774 TTGAAGGTGCATTCGTTAATCCGAAAGGCATAAC
1 TAGAAGGTGCATTCGTTAATCCGAAAGGCATAAC
63981808 TAGAA
1 TAGAA
63981813 ACTCATAATG
Statistics
Matches: 93, Mismatches: 36, Indels: 24
0.61 0.24 0.16
Matches are distributed among these distances:
32 10 0.11
33 12 0.13
34 49 0.53
35 12 0.13
36 10 0.11
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.27
Consensus pattern (34 bp):
TAGAAGGTGCATTCGTTAATCCGAAAGGCATAAC
Found at i:63981725 original size:68 final size:68
Alignment explanation
Indices: 63981616--63981818 Score: 397
Period size: 68 Copynumber: 3.0 Consensus size: 68
63981606 TCTGAAGATC
*
63981616 CGATTCATTAGATCCATAAAAATAGAAGGTGCATTCGTTAATCCGAAAGGCATAACTAGAAACTC
1 CGATTCATTAGATCCATAAAAATTGAAGGTGCATTCGTTAATCCGAAAGGCATAACTAGAAACTC
63981681 ATT
66 ATT
63981684 CGATTCATTAGATCCATAAAAATTGAAGGTGCATTCGTTAATCCGAAAGGCATAACTAGAAACTC
1 CGATTCATTAGATCCATAAAAATTGAAGGTGCATTCGTTAATCCGAAAGGCATAACTAGAAACTC
63981749 ATT
66 ATT
63981752 CGATTCATTAGATCCATAAAAATTGAAGGTGCATTCGTTAATCCGAAAGGCATAACTAGAAACTC
1 CGATTCATTAGATCCATAAAAATTGAAGGTGCATTCGTTAATCCGAAAGGCATAACTAGAAACTC
63981817 AT
66 AT
63981819 AATGTTAATA
Statistics
Matches: 134, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 134 1.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (68 bp):
CGATTCATTAGATCCATAAAAATTGAAGGTGCATTCGTTAATCCGAAAGGCATAACTAGAAACTC
ATT
Found at i:63985343 original size:41 final size:41
Alignment explanation
Indices: 63985286--63985427 Score: 239
Period size: 41 Copynumber: 3.5 Consensus size: 41
63985276 CATTACCATA
*
63985286 CCAGACAGGGTCTTACACGAATCATATACGATGCCAGTGTC
1 CCAGACAGGGTCTTACACGAATCATATACGATGCCAATGTC
* * *
63985327 CCAGACAGGGTCTTACATGAATCATATACGATGCCACTATC
1 CCAGACAGGGTCTTACACGAATCATATACGATGCCAATGTC
63985368 CCAGACAGGGTCTTACACGAATCATATACGATGCCAATGTC
1 CCAGACAGGGTCTTACACGAATCATATACGATGCCAATGTC
*
63985409 CCAGACATGGTCTTACACG
1 CCAGACAGGGTCTTACACG
63985428 TTTTCTCACT
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 94 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (41 bp):
CCAGACAGGGTCTTACACGAATCATATACGATGCCAATGTC
Found at i:63986603 original size:13 final size:13
Alignment explanation
Indices: 63986585--63986611 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
63986575 CACAAACAAT
63986585 AAAATTTTCACAC
1 AAAATTTTCACAC
63986598 AAAATTTTCACAC
1 AAAATTTTCACAC
63986611 A
1 A
63986612 TATCAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:63988634 original size:27 final size:26
Alignment explanation
Indices: 63988604--63988729 Score: 135
Period size: 27 Copynumber: 4.7 Consensus size: 26
63988594 AAATTGTACA
63988604 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTT
* * *
63988631 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* **
63988658 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTT
* *
63988685 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTT
63988713 GCACTAAGTGTGCGATT
1 GCACTAAGTGTGCGATT
63988730 TGATTGTATA
Statistics
Matches: 84, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
26 2 0.02
27 59 0.70
28 23 0.27
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTT
Found at i:63988668 original size:54 final size:54
Alignment explanation
Indices: 63988603--63988729 Score: 152
Period size: 54 Copynumber: 2.3 Consensus size: 54
63988593 TAAATTGTAC
* **
63988603 AGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAAT-GAA-TATG-
1 AGCACTAAGTGTGCGATT-GACCATGCGGCACTAAGTGTGCG-AATCGAACTATGT
* *
63988656 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATGT
1 A-GCACTAAGTGTGCG-ATTGACCATGCGGCACTAAGTGTGCGAATCGAACTATGT
63988712 AGCACTAAGTGTGCGATT
1 AGCACTAAGTGTGCGATT
63988730 TGATTGTATA
Statistics
Matches: 64, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
53 3 0.05
54 39 0.61
55 21 0.33
56 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTGACCATGCGGCACTAAGTGTGCGAATCGAACTATGT
Found at i:63994183 original size:41 final size:40
Alignment explanation
Indices: 63994088--63994261 Score: 204
Period size: 41 Copynumber: 4.3 Consensus size: 40
63994078 TATATGTCGG
* * **
63994088 TACCCCTGAATTGCACATACATGCCCCCGTTTGTACTTGA
1 TACCCTTGAATTGCACATACGTGCCCCTATTTGTACTTGA
*
63994128 TACCCTTGACTTGCACATACGTGCCCCTATTTGTACTTTGA
1 TACCCTTGAATTGCACATACGTGCCCCTATTTGTAC-TTGA
* ** * * *
63994169 TACCTTTGAATTGCACATGTGTGCTCCTGTTTGTACTTCA
1 TACCCTTGAATTGCACATACGTGCCCCTATTTGTACTTGA
*
63994209 GTACCCCTGAATTGCACATACGTGCCCCTATTTGTACTTCGA
1 -TACCCTTGAATTGCACATACGTGCCCCTATTTGTACTT-GA
*
63994251 TACCCCTGAAT
1 TACCCTTGAAT
63994262 ACACTTTTGT
Statistics
Matches: 112, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
40 34 0.30
41 77 0.69
42 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.34
Consensus pattern (40 bp):
TACCCTTGAATTGCACATACGTGCCCCTATTTGTACTTGA
Found at i:63997471 original size:27 final size:27
Alignment explanation
Indices: 63997441--63997513 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 27
63997431 TTGGCGAATT
* * **
63997441 TCAACTCTCCAGGCCTGTTGGCAAAAA
1 TCAACTCGCCAAGCCTACTGGCAAAAA
*
63997468 TCAACTCGCCAAGCCTACTGGCAAATA
1 TCAACTCGCCAAGCCTACTGGCAAAAA
* * *
63997495 CCAGCTCACCAAGCCTACT
1 TCAACTCGCCAAGCCTACT
63997514 AGCGGATACC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.30, C:0.36, G:0.15, T:0.19
Consensus pattern (27 bp):
TCAACTCGCCAAGCCTACTGGCAAAAA
Found at i:63997522 original size:27 final size:27
Alignment explanation
Indices: 63997476--63997527 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
63997466 AATCAACTCG
*
63997476 CCAAGCCTACTGGCAAATACCAGCTCA
1 CCAAGCCTACTAGCAAATACCAGCTCA
**
63997503 CCAAGCCTACTAGCGGATACCAGCT
1 CCAAGCCTACTAGCAAATACCAGCT
63997528 TGCCAGGTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.31, C:0.37, G:0.17, T:0.15
Consensus pattern (27 bp):
CCAAGCCTACTAGCAAATACCAGCTCA
Found at i:64000411 original size:43 final size:42
Alignment explanation
Indices: 64000341--64000488 Score: 151
Period size: 43 Copynumber: 3.5 Consensus size: 42
64000331 ATGTTACTCA
* * *
64000341 TGTAAGACCACATCTGGGACGTTGGCATCGAT-TGTGATTTACG
1 TGTAAGACCACGTCTAGGAC-ATGGCATCGATATGTGA-TTACG
* *
64000384 TGTAAGACCATGTCTAGGACATCGGCATC-ATATATGAGTT-CG
1 TGTAAGACCACGTCTAGGACAT-GGCATCGATATGTGA-TTACG
* *
64000426 TGTAAGACC-CTGTCTAGGATAGTGGCATCGATATGTGATTACA
1 TGTAAGACCAC-GTCTAGGACA-TGGCATCGATATGTGATTACG
64000469 TGTAAGACCACGTCTAGGAC
1 TGTAAGACCACGTCTAGGAC
64000489 GCTAGCATTG
Statistics
Matches: 87, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
42 31 0.36
43 55 0.63
44 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (42 bp):
TGTAAGACCACGTCTAGGACATGGCATCGATATGTGATTACG
Found at i:64002991 original size:15 final size:15
Alignment explanation
Indices: 64002959--64002987 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
64002949 ATTTCCTATG
64002959 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
64002974 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
64002988 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:64004151 original size:43 final size:42
Alignment explanation
Indices: 64004090--64004260 Score: 152
Period size: 43 Copynumber: 4.0 Consensus size: 42
64004080 CATAGGATTT
* * *
64004090 TCGATATGTGTTCTCGTGTAAGACCACATCTAGGACGTTGGCA
1 TCGATATGTGAT-TCGTGTAAGACCACATCTGGGACATTGGCA
* * * *
64004133 TCGATATGTGATAACGTGTAAGACCAGC-TTTGGGACATCGGTA
1 TCGATATGTGAT-TCGTGTAAGACCA-CATCTGGGACATTGGCA
* * *
64004176 TCGCAT-T-CGATTCGTGTAAGACC-CTGTCTGGGACAATGGCA
1 TCG-ATATGTGATTCGTGTAAGACCAC-ATCTGGGACATTGGCA
* *
64004217 TCGATATGTGATTGCATGTAAGACCACATCTGGGACGTTGGCA
1 TCGATATGTGATT-CGTGTAAGACCACATCTGGGACATTGGCA
64004260 T
1 T
64004261 TGTACGATAT
Statistics
Matches: 101, Mismatches: 19, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
39 1 0.01
40 2 0.02
41 26 0.26
42 7 0.07
43 61 0.60
44 4 0.04
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.29
Consensus pattern (42 bp):
TCGATATGTGATTCGTGTAAGACCACATCTGGGACATTGGCA
Found at i:64008439 original size:46 final size:46
Alignment explanation
Indices: 64008372--64008468 Score: 176
Period size: 46 Copynumber: 2.1 Consensus size: 46
64008362 ACCGAATCTT
*
64008372 TCTTAGTGGGTGTCAAAGGTAACCCACTCACAAAGTCCATTGTTAC
1 TCTTTGTGGGTGTCAAAGGTAACCCACTCACAAAGTCCATTGTTAC
*
64008418 TCTTTGTGGGTGTCAAAGGTAACCCACTCACAAAGTCCATTGTTAG
1 TCTTTGTGGGTGTCAAAGGTAACCCACTCACAAAGTCCATTGTTAC
64008464 TCTTT
1 TCTTT
64008469 CCCACTTCCA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.32
Consensus pattern (46 bp):
TCTTTGTGGGTGTCAAAGGTAACCCACTCACAAAGTCCATTGTTAC
Found at i:64024815 original size:32 final size:32
Alignment explanation
Indices: 64024774--64024840 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
64024764 GTCTGCTTCA
64024774 AAATCTAAAATTACAAAATCAGCAGGAAATAT
1 AAATCTAAAATTACAAAATCAGCAGGAAATAT
*
64024806 AAATCTAAAATTACAAAATCAGTAGGAAATAT
1 AAATCTAAAATTACAAAATCAGCAGGAAATAT
64024838 AAA
1 AAA
64024841 CTTATCTACA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.58, C:0.10, G:0.09, T:0.22
Consensus pattern (32 bp):
AAATCTAAAATTACAAAATCAGCAGGAAATAT
Found at i:64036640 original size:27 final size:27
Alignment explanation
Indices: 64036610--64036787 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
64036600 ATATTGAGCC
* *
64036610 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
64036637 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
64036664 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
64036692 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
64036719 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
64036746 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
64036773 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64036788 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 102 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:64036749 original size:82 final size:81
Alignment explanation
Indices: 64036631--64036786 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
64036621 TGCTATATAA
* * *
64036631 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
64036696 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
64036713 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
64036777 CACTTAGTGC
65 CACTTAGTGC
64036787 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 19 0.29
82 47 0.71
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:64040153 original size:46 final size:46
Alignment explanation
Indices: 64040097--64040215 Score: 134
Period size: 47 Copynumber: 2.5 Consensus size: 46
64040087 GACAGGACAG
* * *
64040097 GACAGAAATGAGCAATGTAAGTCCATATCA-GT-TATATGGCTTTGGA
1 GACAGGAATGAGC-ATGTAAGTCCATAT-ATATATATATGGCATTGGA
*
64040143 GACAGGAATGAGCCATGTAAGCCCATATATATATATATGGCATTGGA
1 GACAGGAATGAG-CATGTAAGTCCATATATATATATATGGCATTGGA
* *
64040190 GACAGGAATAATTCATGTAAGTCCAT
1 GACAGGAATGA-GCATGTAAGTCCAT
64040216 GTCGAAGACA
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
45 1 0.02
46 25 0.40
47 36 0.58
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (46 bp):
GACAGGAATGAGCATGTAAGTCCATATATATATATATGGCATTGGA
Found at i:64040196 original size:47 final size:46
Alignment explanation
Indices: 64040097--64040198 Score: 134
Period size: 46 Copynumber: 2.2 Consensus size: 46
64040087 GACAGGACAG
* * * *
64040097 GACAGAAATGAGCAATGTAAGTCCATATCAGTTATATGGCTTTGGA
1 GACAGGAATGAGCAATGTAAGCCCATATCAATTATATGGCATTGGA
*
64040143 GACAGGAATGAGCCATGTAAGCCCATAT-ATATATATATGGCATTGGA
1 GACAGGAATGAGCAATGTAAGCCCATATCA-AT-TATATGGCATTGGA
64040190 GACAGGAAT
1 GACAGGAAT
64040199 AATTCATGTA
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
45 1 0.02
46 26 0.53
47 22 0.45
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (46 bp):
GACAGGAATGAGCAATGTAAGCCCATATCAATTATATGGCATTGGA
Done.