Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 190 of 235
Found at i:64679438 original size:20 final size:20
Alignment explanation
Indices: 64679400--64679449 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
64679390 TTTCCAGCAG
* *
64679400 ATTTATTCATAAAATTTTAGA
1 ATTT-TTCATAAAACTTTACA
*
64679421 ATTTTTCATCAAACTTTACA
1 ATTTTTCATAAAACTTTACA
*
64679441 ACTTTTCAT
1 ATTTTTCAT
64679450 TTTAGTTCCT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 21 0.84
21 4 0.16
ACGTcount: A:0.36, C:0.14, G:0.02, T:0.48
Consensus pattern (20 bp):
ATTTTTCATAAAACTTTACA
Found at i:64684043 original size:21 final size:20
Alignment explanation
Indices: 64684019--64684058 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
64684009 TATTATTAAT
64684019 ATTAGCATTATCATTCTATTC
1 ATTAGCATTATCATT-TATTC
* *
64684040 ATTATCATTATTATTTATT
1 ATTAGCATTATCATTTATT
64684059 AGTTGGTTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.30, C:0.12, G:0.03, T:0.55
Consensus pattern (20 bp):
ATTAGCATTATCATTTATTC
Found at i:64688180 original size:46 final size:46
Alignment explanation
Indices: 64688113--64688203 Score: 173
Period size: 46 Copynumber: 2.0 Consensus size: 46
64688103 ACTATTCCAA
*
64688113 TGCACATACGAAACATACCTCATTGTTGGGATTTTACAAGCGTATC
1 TGCACATACAAAACATACCTCATTGTTGGGATTTTACAAGCGTATC
64688159 TGCACATACAAAACATACCTCATTGTTGGGATTTTACAAGCGTAT
1 TGCACATACAAAACATACCTCATTGTTGGGATTTTACAAGCGTAT
64688204 TAACTGAAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (46 bp):
TGCACATACAAAACATACCTCATTGTTGGGATTTTACAAGCGTATC
Found at i:64688396 original size:39 final size:40
Alignment explanation
Indices: 64688249--64688467 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
64688239 GAATCACATA
* * * *
64688249 CCTTCGGAATTTAA-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAACCCGGATTTAG-TAACTCGCACAAATG
* *
64688288 CCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATG
* *
64688328 CCTTCGGGACTAAACCCGGATTTAGTAACTCGCACCAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
** * *
64688368 CCTTCAAG-CTTAGCCCGGAATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
* *
64688407 CCTTCGGGACTTAACCTGGATTTAGTAACTCGTACAAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
64688447 CCTTCGGGA-TCTAACCCGGAT
1 CCTTCGGGACT-TAACCCGGAT
64688468 ATCATTCGAA
Statistics
Matches: 151, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
39 46 0.30
40 103 0.68
41 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
Found at i:64691838 original size:40 final size:40
Alignment explanation
Indices: 64691761--64691979 Score: 268
Period size: 40 Copynumber: 5.5 Consensus size: 40
64691751 GAATCACATA
* * * *
64691761 CCTTCGGAATTTAA-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAACCCGGATTTAG-TAACTCGCACAAATG
* * *
64691800 CCTTCGGGACATAGCCCGG-TTATAGTAACTCACACAAATG
1 CCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATG
*
64691840 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
* *
64691880 CCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
* *
64691919 CCTTCGGGACTTAACCTGGATTTAGTAACTCGTACAAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
64691959 CCTTCGGGA-TCTAACCCGGAT
1 CCTTCGGGACT-TAACCCGGAT
64691980 ATCATTCGAA
Statistics
Matches: 155, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
39 49 0.32
40 104 0.67
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
Found at i:64691905 original size:79 final size:80
Alignment explanation
Indices: 64691761--64691981 Score: 281
Period size: 79 Copynumber: 2.8 Consensus size: 80
64691751 GAATCACATA
* * * * *
64691761 CCTTCGGAATTTAA-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATA
1 CCTTCGGGACTTAACCCGGATTTAG-TAACTCGCACAAATGCCTTCGGGACATAGCCCGGATATA
64691824 GTAACTCACACAAATG
65 GTAACTCACACAAATG
* *
64691840 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGA-ATTA
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACATAGCCCGGATA-TA
*
64691903 GTAACTCGCACAAATG
65 GTAACTCACACAAATG
* * *
64691919 CCTTCGGGACTTAACCTGGATTTAGTAACTCGTACAAATGCCTTCGGGATC-TAACCCGGATAT
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGA-CATAGCCCGGATAT
64691982 CATTCGAATA
Statistics
Matches: 124, Mismatches: 12, Indels: 11
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 84 0.68
80 37 0.30
81 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAG
TAACTCACACAAATG
Found at i:64700109 original size:40 final size:41
Alignment explanation
Indices: 64699985--64700110 Score: 179
Period size: 40 Copynumber: 3.1 Consensus size: 41
64699975 CAGAATTTAA
* *
64699985 CCGGA-TATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGATTATAG-TAACTCGCACAAATGCCTTCGGGACATAAC
*
64700025 CCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATTATAGTAACTCGCACAAATGCCTTCGGGACATAAC
*
64700065 CCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACCTAAC
1 CCGGATTATAGTAACTCGCACAAATGCCTTCGGGACATAAC
64700105 CCGGAT
1 CCGGAT
64700111 ATCATTCGAA
Statistics
Matches: 79, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
39 1 0.01
40 76 0.96
41 2 0.03
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (41 bp):
CCGGATTATAGTAACTCGCACAAATGCCTTCGGGACATAAC
Found at i:64706966 original size:46 final size:46
Alignment explanation
Indices: 64706912--64707003 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 46
64706902 CTTTTTCTAG
* *
64706912 AAATCCGAGCCTCTATTTCGGCTTGTTTTTTTTTTTTTACTCAGTT
1 AAATCCGAGCCTCTATTTCGGCTTGTTTTTTTTTCTTCACTCAGTT
64706958 AAATCCGAGCCTCTATTTCGGCTTGTTTTTTTTTCTTCACTCAGTT
1 AAATCCGAGCCTCTATTTCGGCTTGTTTTTTTTTCTTCACTCAGTT
64707004 CTTCAGCTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.15, C:0.22, G:0.13, T:0.50
Consensus pattern (46 bp):
AAATCCGAGCCTCTATTTCGGCTTGTTTTTTTTTCTTCACTCAGTT
Found at i:64712246 original size:17 final size:17
Alignment explanation
Indices: 64712224--64712257 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
64712214 TATTTCTTAC
*
64712224 TATTATTGCATATATTG
1 TATTATTGAATATATTG
*
64712241 TATTATTTAATATATTG
1 TATTATTGAATATATTG
64712258 GAAAAGTTGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.03, G:0.09, T:0.56
Consensus pattern (17 bp):
TATTATTGAATATATTG
Found at i:64712845 original size:99 final size:99
Alignment explanation
Indices: 64712674--64712860 Score: 347
Period size: 99 Copynumber: 1.9 Consensus size: 99
64712664 TATTTTGAGG
* *
64712674 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAATTGGTCGCATGTGTAGTACT
64712739 AAGTGCAGGCTACTATGCGTACCGAAACCTGTGA
66 AAGTGCAGGCTACTATGCGTACCGAAACCTGTGA
*
64712773 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAATTGGTCGCATGTGTAGTACT
64712838 AAGTGCAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCGTACC
64712861 AGATAGCTTC
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
99 85 1.00
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.28
Consensus pattern (99 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCGAAACCTGTGA
Found at i:64712861 original size:49 final size:49
Alignment explanation
Indices: 64712679--64712865 Score: 243
Period size: 49 Copynumber: 3.8 Consensus size: 49
64712669 TGAGGTCACG
* *
64712679 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
* * * *
64712728 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACC-GA-AACCTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA--T-TGGTCGCA
** *
64712778 TGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
*
64712827 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
64712866 GCTTCGGCTA
Statistics
Matches: 117, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
47 2 0.02
48 2 0.02
49 73 0.62
50 37 0.32
51 2 0.02
52 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
Found at i:64715168 original size:27 final size:27
Alignment explanation
Indices: 64715138--64715315 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
64715128 ATATTGAGTC
* * * *
64715138 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
64715165 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
64715192 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
64715220 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
64715247 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
64715274 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
64715301 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64715316 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:64715277 original size:82 final size:81
Alignment explanation
Indices: 64715159--64715314 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
64715149 TGCTATATAA
* *
64715159 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
64715224 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
64715241 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
64715305 CACTTAGTGC
65 CACTTAGTGC
64715315 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:64724861 original size:39 final size:39
Alignment explanation
Indices: 64724817--64724898 Score: 146
Period size: 39 Copynumber: 2.1 Consensus size: 39
64724807 AATTATATTA
*
64724817 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCAGATACATTT
*
64724856 CCAGCACGAAGCCTGCGGGACTTTAGCCCAGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCAGATACATTT
64724895 CCAG
1 CCAG
64724899 TGTCTTGAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.23, T:0.20
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGACTTTAGCCCAGATACATTT
Found at i:64732902 original size:14 final size:14
Alignment explanation
Indices: 64732883--64732910 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
64732873 CCACAGCGAC
64732883 CTTGTCCACGACCT
1 CTTGTCCACGACCT
64732897 CTTGTCCACGACCT
1 CTTGTCCACGACCT
64732911 GAGCCTGAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.43, G:0.14, T:0.29
Consensus pattern (14 bp):
CTTGTCCACGACCT
Found at i:64736563 original size:15 final size:15
Alignment explanation
Indices: 64736539--64736568 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
64736529 CTAATGTATT
64736539 TTTTGAGGTTTCGGC
1 TTTTGAGGTTTCGGC
*
64736554 TTTTGTGGTTTCGGC
1 TTTTGAGGTTTCGGC
64736569 ACAAGTGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.13, G:0.33, T:0.50
Consensus pattern (15 bp):
TTTTGAGGTTTCGGC
Found at i:64738731 original size:28 final size:27
Alignment explanation
Indices: 64738694--64738794 Score: 112
Period size: 28 Copynumber: 3.6 Consensus size: 27
64738684 ACAAACTGAT
*
64738694 CTCGCACACACAGTGCTCGGTTACAGAA
1 CTCGCACACACAGTGCTCAGTTAC-GAA
*** *
64738722 CTCGCACACACAGTGCCTCAACAACCGAT
1 CTCGCACACACAGTG-CTCAGTTA-CGAA
*
64738751 CTCGAACACACAGTGCTCAGTTACGAAA
1 CTCGCACACACAGTGCTCAGTTACG-AA
64738779 CTCGCACACACAGTGC
1 CTCGCACACACAGTGC
64738795 CTATGTTCAC
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
27 2 0.03
28 36 0.61
29 20 0.34
30 1 0.02
ACGTcount: A:0.31, C:0.36, G:0.18, T:0.16
Consensus pattern (27 bp):
CTCGCACACACAGTGCTCAGTTACGAA
Found at i:64738765 original size:57 final size:58
Alignment explanation
Indices: 64738666--64738796 Score: 185
Period size: 57 Copynumber: 2.2 Consensus size: 58
64738656 GATCTCATTT
* * * *
64738666 CACACACTTAGTGCCCCAACAAACTGATCTCGCACACACAGTGCTCGGTTAC-AGAACTCG
1 CACACAC--AGTGCCTCAACAAACCGATCTCGAACACACAGTGCTCAGTTACGA-AACTCG
64738726 CACACACAGTGCCTCAAC-AACCGATCTCGAACACACAGTGCTCAGTTACGAAACTCG
1 CACACACAGTGCCTCAACAAACCGATCTCGAACACACAGTGCTCAGTTACGAAACTCG
64738783 CACACACAGTGCCT
1 CACACACAGTGCCT
64738797 ATGTTCACTT
Statistics
Matches: 66, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
57 48 0.73
58 11 0.17
60 7 0.11
ACGTcount: A:0.31, C:0.36, G:0.16, T:0.17
Consensus pattern (58 bp):
CACACACAGTGCCTCAACAAACCGATCTCGAACACACAGTGCTCAGTTACGAAACTCG
Found at i:64741090 original size:39 final size:39
Alignment explanation
Indices: 64741045--64741195 Score: 221
Period size: 39 Copynumber: 3.9 Consensus size: 39
64741035 TACCAGCACA
64741045 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAACACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAACACG
* * * *
64741084 GAGCCTGCGGGACTTTAGCCCGAATACATTTCCAGCATG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAACACG
* * * *
64741123 AAGCCTGCGAGACTTTAGCCCAGATACATTTCCACCACA
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAACACG
*
64741162 AAGCCTGCGGGGCTTTAGCCCGGATACATTTCCA
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCA
64741196 GTGTCTTGAA
Statistics
Matches: 98, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 98 1.00
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (39 bp):
AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAACACG
Found at i:64744167 original size:41 final size:42
Alignment explanation
Indices: 64744067--64744235 Score: 157
Period size: 41 Copynumber: 4.0 Consensus size: 42
64744057 TTGTAAACTC
* ** * *
64744067 ATACAATGCCAACATCCCAGAC-GAGGTCTTACATGTAATCAA
1 ATACGATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCAA
* * *
64744109 ATATCGATGCCACTGTCCCAAACAGGGTCTTA-ACGAAATCAT
1 ATA-CGATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAA
*
64744151 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAA
1 ATACGATGCCAATGTCCCAGACAGGGTCTTACACG-AAA--TCAA
* *
64744196 ATA-GATGCCAACGTCCCAGA-TGTGGTCTTACACGAAATCA
1 ATACGATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCA
64744236 CATATCGGAA
Statistics
Matches: 105, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
41 28 0.27
42 16 0.15
43 27 0.26
44 28 0.27
45 6 0.06
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAA
Found at i:64744212 original size:44 final size:42
Alignment explanation
Indices: 64744067--64744235 Score: 166
Period size: 44 Copynumber: 4.0 Consensus size: 42
64744057 TTGTAAACTC
* * * *
64744067 ATACAATGCCAACATCCCAGACGA-GGTCTTACATGTAATCAA
1 ATACGATGCCAACGTCCCAGAC-ATGGTCTTACACGAAATCAA
* * *
64744109 ATATCGATGCC-ACTGTCCCAAACAGGGTCTTA-ACGAAATCAT
1 ATA-CGATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCAA
*
64744151 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAA
1 ATACGATGCCAACGTCCCAGACATGGTCTTACACG-AAA--TCAA
**
64744196 ATA-GATGCCAACGTCCCAGATGTGGTCTTACACGAAATCA
1 ATACGATGCCAACGTCCCAGACATGGTCTTACACGAAATCA
64744236 CATATCGGAA
Statistics
Matches: 106, Mismatches: 13, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
41 26 0.25
42 20 0.19
43 26 0.25
44 28 0.26
45 6 0.06
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (42 bp):
ATACGATGCCAACGTCCCAGACATGGTCTTACACGAAATCAA
Found at i:64749019 original size:29 final size:29
Alignment explanation
Indices: 64748977--64749101 Score: 162
Period size: 29 Copynumber: 4.3 Consensus size: 29
64748967 GAAAGCATGT
*
64748977 ATATGAATGTGATTTGGGCCTAATAGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
64749006 ATATGAATGTGATTTGGGCCTAATGGGCT
1 ATATGAATGTGATTTGGGCCTAATGGGCC
**
64749035 ATGCGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * * *
64749064 ATATGAATGAGA-TTGGGCTTAGTGGGTC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
64749092 ATATGCATGT
1 ATATGAATGT
64749102 ATGTAGACTT
Statistics
Matches: 83, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
28 21 0.25
29 62 0.75
ACGTcount: A:0.25, C:0.12, G:0.31, T:0.32
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:64757232 original size:5 final size:5
Alignment explanation
Indices: 64757203--64757295 Score: 68
Period size: 5 Copynumber: 18.0 Consensus size: 5
64757193 ATCCTCCTTT
*
64757203 TTTTA -TTTA TTCTTA TTTT- TTTTA TTTTA TTTTA TTTTA TTTTTA TTTTTC
1 TTTTA TTTTA TT-TTA TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA -TTTTA
* *
64757254 TTTTGA TTTTTA TTTCCA TTTCAA TTTTA --TTA TTTTA TTTTA
1 TTTT-A -TTTTA TTT-TA TTT-TA TTTTA TTTTA TTTTA TTTTA
64757296 AAAGACATAT
Statistics
Matches: 74, Mismatches: 5, Indels: 18
0.76 0.05 0.19
Matches are distributed among these distances:
3 3 0.04
4 8 0.11
5 34 0.46
6 25 0.34
7 4 0.05
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.75
Consensus pattern (5 bp):
TTTTA
Found at i:64757264 original size:7 final size:6
Alignment explanation
Indices: 64757202--64757268 Score: 61
Period size: 6 Copynumber: 11.5 Consensus size: 6
64757192 GATCCTCCTT
*
64757202 TTTTTA TTTATTC TTATTT- TTTTTA -TTTTA -TTTTA -TTTTA TTTTTA
1 TTTTTA TTT-TTA TT-TTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
* *
64757248 TTTTTC TTTTGA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTT
64757269 CCATTTCAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
5 18 0.35
6 27 0.52
7 6 0.12
8 1 0.02
ACGTcount: A:0.15, C:0.03, G:0.01, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:64766406 original size:19 final size:19
Alignment explanation
Indices: 64766368--64766406 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
64766358 AATGGTCATA
**
64766368 AAAATCTTGACATGGCATG
1 AAAATCTTGACATGAAATG
*
64766387 AAAATCTTGAGATGAAATG
1 AAAATCTTGACATGAAATG
64766406 A
1 A
64766407 TAATGACTTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.44, C:0.10, G:0.21, T:0.26
Consensus pattern (19 bp):
AAAATCTTGACATGAAATG
Found at i:64769150 original size:17 final size:16
Alignment explanation
Indices: 64769128--64769161 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
64769118 CTCGACTACG
64769128 AGAATTCTGAACCGCT
1 AGAATTCTGAACCGCT
*
64769144 NAGAATTCTGACCCGCT
1 -AGAATTCTGAACCGCT
64769161 A
1 A
64769162 TCGGACCAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 1 0.06
17 15 0.94
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.24
Consensus pattern (16 bp):
AGAATTCTGAACCGCT
Found at i:64770954 original size:40 final size:39
Alignment explanation
Indices: 64770893--64770985 Score: 96
Period size: 40 Copynumber: 2.3 Consensus size: 39
64770883 TCTCGATATA
* *
64770893 GCACACTTAGTGCCTCGTATAGCCAAAGCTATTCCAATTC
1 GCACACTTAGTG-CTCATATAGCCAAAGCTATTCCAAATC
* *** *
64770933 GCACACTTAGTGCTATATATAGTTGAAGCTATTTCAAATC
1 GCACACTTAGTGCT-CATATAGCCAAAGCTATTCCAAATC
*
64770973 ACACACTTAGTGC
1 GCACACTTAGTGC
64770986 CGAGCATAGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
39 2 0.05
40 42 0.95
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (39 bp):
GCACACTTAGTGCTCATATAGCCAAAGCTATTCCAAATC
Found at i:64785213 original size:43 final size:42
Alignment explanation
Indices: 64785089--64785249 Score: 116
Period size: 42 Copynumber: 3.8 Consensus size: 42
64785079 CGAGACGCTC
* *
64785089 ATACAATGCCAACGTCCCAGACGTGGTC-TACATGT-AATCAA
1 ATACAATGCC-ATGTCCCAGACATGGTCTTACATGTAAATCAA
* * * *
64785130 ATATCGATGCCACTGTCCCAAACAGGGTCTTAC--GCAAAATCAA
1 ATA-CAATGCCA-TGTCCCAGACATGGTCTTACATG-TAAATCAA
*
64785173 ATACAATGCCGATGTCCCAGATATGGTCTTACATGTAAATCATA
1 ATACAATGCC-ATGTCCCAGACATGGTCTTACATGTAAATCA-A
* * * *
64785217 AGT-CGATGCCAACGTCCTAGACGTGGTCTTACA
1 A-TACAATGCC-ATGTCCCAGACATGGTCTTACA
64785250 CGAAAACATA
Statistics
Matches: 93, Mismatches: 17, Indels: 17
0.73 0.13 0.13
Matches are distributed among these distances:
41 5 0.05
42 41 0.44
43 19 0.20
44 27 0.29
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (42 bp):
ATACAATGCCATGTCCCAGACATGGTCTTACATGTAAATCAA
Found at i:64788749 original size:17 final size:17
Alignment explanation
Indices: 64788717--64788749 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
64788707 CAAAGCAACG
64788717 ATCACAAAAACGTAAAA
1 ATCACAAAAACGTAAAA
64788734 ATCATCAAAAAC-TAAA
1 ATCA-CAAAAACGTAAA
64788750 CAAAACTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.64, C:0.18, G:0.03, T:0.15
Consensus pattern (17 bp):
ATCACAAAAACGTAAAA
Found at i:64791491 original size:40 final size:40
Alignment explanation
Indices: 64791390--64791574 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
64791380 TATTCGAATG
* *
64791390 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * *
64791431 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
64791471 ATATCCGGGCTAGGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
64791511 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
64791551 ACATTCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
64791575 CTTGTGCAAG
Statistics
Matches: 120, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 90 0.75
41 29 0.24
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:64795107 original size:42 final size:43
Alignment explanation
Indices: 64795054--64795142 Score: 171
Period size: 42 Copynumber: 2.1 Consensus size: 43
64795044 TGATTTGTTT
64795054 GATCAACTAAAGGGAGCCTCAGTGTTTTCAAAGATAGATTTGA
1 GATCAACTAAAGGGAGCCTCAGTGTTTTCAAAGATAGATTTGA
64795097 GATC-ACTAAAGGGAGCCTCAGTGTTTTCAAAGATAGATTTGA
1 GATCAACTAAAGGGAGCCTCAGTGTTTTCAAAGATAGATTTGA
64795139 GATC
1 GATC
64795143 GGGTTATTAC
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 42 0.91
43 4 0.09
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.28
Consensus pattern (43 bp):
GATCAACTAAAGGGAGCCTCAGTGTTTTCAAAGATAGATTTGA
Found at i:64802139 original size:84 final size:84
Alignment explanation
Indices: 64802039--64802205 Score: 316
Period size: 84 Copynumber: 2.0 Consensus size: 84
64802029 TGAAACCTTA
*
64802039 GCATCCAGTAAGACTTTACCTATTGATTCTACTGAGTTCGTAATTCGGGTGTCAAATCCCTTGGG
1 GCATCCAGTAAGACTTTACCTATTGATTCTACTGAGTTCGTAATTCGGGTGTCAAATCCCTCGGG
64802104 TCGTTACGTGCTTGTCGAT
66 TCGTTACGTGCTTGTCGAT
*
64802123 GCATCTAGTAAGACTTTACCTATTGATTCTACTGAGTTCGTAATTCGGGTGTCAAATCCCTCGGG
1 GCATCCAGTAAGACTTTACCTATTGATTCTACTGAGTTCGTAATTCGGGTGTCAAATCCCTCGGG
64802188 TCGTTACGTGCTTGTCGA
66 TCGTTACGTGCTTGTCGA
64802206 CAAAGTGTGT
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 81 1.00
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (84 bp):
GCATCCAGTAAGACTTTACCTATTGATTCTACTGAGTTCGTAATTCGGGTGTCAAATCCCTCGGG
TCGTTACGTGCTTGTCGAT
Found at i:64807433 original size:53 final size:56
Alignment explanation
Indices: 64807328--64807435 Score: 132
Period size: 53 Copynumber: 2.0 Consensus size: 56
64807318 CATAACATAG
* *
64807328 CACGCCTCTCAACAGGGCTACTTAAGAGCACCCGGACCTAGCATGCATCACATAAC
1 CACGCCTCTCAACAGGGCTACATAAGAGCACCCGGACCTAGCATGCACCACATAAC
* * * * *
64807384 CACGCCTTTCAACA-GGCTACAT-A-AGCTCTCGGACCTAGCGTGTACCACATAA
1 CACGCCTCTCAACAGGGCTACATAAGAGCACCCGGACCTAGCATGCACCACATAA
64807436 TTACGTGCCT
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
53 24 0.53
54 1 0.02
55 7 0.16
56 13 0.29
ACGTcount: A:0.30, C:0.34, G:0.18, T:0.19
Consensus pattern (56 bp):
CACGCCTCTCAACAGGGCTACATAAGAGCACCCGGACCTAGCATGCACCACATAAC
Found at i:64811394 original size:23 final size:23
Alignment explanation
Indices: 64811368--64811474 Score: 117
Period size: 23 Copynumber: 4.7 Consensus size: 23
64811358 CAAAGTACCA
* *
64811368 CACTGTAATATAGCCGAAGCTAT
1 CACTGTAATGTAGCCGAAGCTAC
* *
64811391 CACTGTAACGTAGCCAAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
*
64811414 CACTGTATTGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
* *
64811437 CACT-AAGATGTAGCCAAAGCTAC
1 CACTGTA-ATGTAGCCGAAGCTAC
* *
64811460 CACTATATTGTAGCC
1 CACTGTAATGTAGCC
64811475 TATAGATTCC
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
22 1 0.01
23 68 0.97
24 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (23 bp):
CACTGTAATGTAGCCGAAGCTAC
Found at i:64811428 original size:46 final size:46
Alignment explanation
Indices: 64811368--64811474 Score: 144
Period size: 46 Copynumber: 2.3 Consensus size: 46
64811358 CAAAGTACCA
* * * *
64811368 CACTGTAATATAGCCGAAGCTATCACTGTA-ACGTAGCCAAAGCTAC
1 CACTGTATTGTAGCCGAAGCTACCACT-AAGACGTAGCCAAAGCTAC
*
64811414 CACTGTATTGTAGCCGAAGCTACCACTAAGATGTAGCCAAAGCTAC
1 CACTGTATTGTAGCCGAAGCTACCACTAAGACGTAGCCAAAGCTAC
*
64811460 CACTATATTGTAGCC
1 CACTGTATTGTAGCC
64811475 TATAGATTCC
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
45 1 0.02
46 53 0.98
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (46 bp):
CACTGTATTGTAGCCGAAGCTACCACTAAGACGTAGCCAAAGCTAC
Found at i:64820092 original size:50 final size:49
Alignment explanation
Indices: 64819973--64820265 Score: 243
Period size: 50 Copynumber: 5.8 Consensus size: 49
64819963 TTATGAGAAC
* * *
64819973 ACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGT
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTGTTAGGT
* * * *
64820024 CACGTGTGTAGTGCTAAGTGTAGGCTACTACATGTACCAGATTGTTAGGT
1 -ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * * *
64820074 AGCATGTGTAGTAGTAAGTGCAGGCTACT-CTGCGTACCTGATAGCTTTGAT
1 A-CATGTGTAGTACTAAGTGCAGGCTACTAC-GTGTACCAGATTG-TTAGGT
* * ** *
64820125 CACGTGTGTAGTACTAAGTACAGGCTACTACGTGTATTAGATGGTTAGGT
1 -ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
*
64820175 -CAAGTGTGTAGTACTAAGTGCAGGATACTACGTGTACCAGATTGTTAGGT
1 AC-A-TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * *
64820225 CGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCAGA
1 -ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
64820266 GAGCTTCGGT
Statistics
Matches: 193, Mismatches: 37, Indels: 24
0.76 0.15 0.09
Matches are distributed among these distances:
48 4 0.02
49 5 0.03
50 117 0.61
51 37 0.19
52 30 0.16
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (49 bp):
ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
Found at i:64820212 original size:101 final size:99
Alignment explanation
Indices: 64820018--64820254 Score: 253
Period size: 101 Copynumber: 2.4 Consensus size: 99
64820008 TAAGACAGTT
* * * *
64820018 TTAGGTCACGTGTGTAGTGCTAAGTGTAGGCTACTACATGTACCAGATTGTTAGGTAGCATGTGT
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTTAGGTAG-ATGTGT
* * *
64820083 AGTAGTAAGTGCAGGCTACTCTGCGTACCTGATAG
65 AGTACTAAGTGCAGGATACTCTGCGTACCAGATAG
* * * **
64820118 CTTTGATCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTATTAGATGGTTAGGTCA-AGTGT
1 -TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTTAGGT-AGA-TGT
* *
64820182 GTAGTACTAAGTGCAGGATACTAC-GTGTACCAGATTG
63 GTAGTACTAAGTGCAGGATACT-CTGCGTACCAGATAG
* * * *
64820219 TTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTA
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTA
64820255 TGCGTACCAG
Statistics
Matches: 113, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
100 31 0.27
101 80 0.71
102 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (99 bp):
TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTTAGGTAGATGTGTA
GTACTAAGTGCAGGATACTCTGCGTACCAGATAG
Found at i:64820252 original size:151 final size:153
Alignment explanation
Indices: 64819976--64820271 Score: 418
Period size: 151 Copynumber: 1.9 Consensus size: 153
64819966 TGAGAACACA
* * * * * *
64819976 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAGTTTTAGGTCACGTGTGTAGTGCTAA
1 TGTGTAGTACTAAGTACAGGCTACTACGTGTTTAAGACAGTGTTAGGTCAAGTGTGTAGTACTAA
* * * * *
64820041 GTGTAGGCTACTACATGTACCAGATTGTTAGGTAGCATGTGTAGTAGTAAGTGCAGGCTACTCTG
66 GTGCAGGATACTACATGTACCAGATTGTTAGGTAGCATGTGTAGTACTAAGTGCAAGCTACTATG
* *
64820106 CGTACCTGATAGCTTTGATCACG
131 CGTACCAGAGAGCTTTGATCACG
*
64820129 TGTGTAGTACTAAGTACAGGCTACTACGTGTATT-AGA-TG-GTTAGGTCAAGTGTGTAGTACTA
1 TGTGTAGTACTAAGTACAGGCTACTACGTGT-TTAAGACAGTGTTAGGTCAAGTGTGTAGTACTA
* *
64820191 AGTGCAGGATACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTAT
65 AGTGCAGGATACTACATGTACCAGATTGTTAGGTAGCATGTGTAGTACTAAGTGCAAGCTACTAT
64820256 GCGTACCAGAGAGCTT
130 GCGTACCAGAGAGCTT
64820272 CGGTTACAAG
Statistics
Matches: 126, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
151 92 0.73
152 1 0.01
153 31 0.25
154 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (153 bp):
TGTGTAGTACTAAGTACAGGCTACTACGTGTTTAAGACAGTGTTAGGTCAAGTGTGTAGTACTAA
GTGCAGGATACTACATGTACCAGATTGTTAGGTAGCATGTGTAGTACTAAGTGCAAGCTACTATG
CGTACCAGAGAGCTTTGATCACG
Found at i:64832633 original size:34 final size:33
Alignment explanation
Indices: 64832583--64832646 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 33
64832573 TTGTGTGCAT
* *
64832583 ACTGTACTGAACTGGGCTA-AGGCCCAGACTACC
1 ACTGTACTGAAATGGGC-ACAAGCCCAGACTACC
64832616 ACTGATACTGAAATGGGCACAAGCCCAGACT
1 ACTG-TACTGAAATGGGCACAAGCCCAGACT
64832647 GCTTCTACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
33 5 0.19
34 22 0.81
ACGTcount: A:0.31, C:0.28, G:0.23, T:0.17
Consensus pattern (33 bp):
ACTGTACTGAAATGGGCACAAGCCCAGACTACC
Found at i:64839973 original size:83 final size:83
Alignment explanation
Indices: 64839875--64840039 Score: 276
Period size: 83 Copynumber: 2.0 Consensus size: 83
64839865 TCTGTACATG
*
64839875 CACATAACAAAACAAATAGTAGCCATATTACATGATTTAAAAAACAATCACATGCGCATCATTGG
1 CACATAACAAAACAAATAGTAGACATATTACATGATTTAAAAAACAATCACATGCGCATCATTGG
*
64839940 TACAAAATAGTATGGCTA
66 TACAAAATAATATGGCTA
* * *
64839958 CACATAATAAAACAAATAGTAGACATATTACATGATTTAAAAAGCAATCACATGTGCATCATTGG
1 CACATAACAAAACAAATAGTAGACATATTACATGATTTAAAAAACAATCACATGCGCATCATTGG
*
64840023 TACAATATAATATGGCT
66 TACAAAATAATATGGCT
64840040 GTACATGCTA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
83 76 1.00
ACGTcount: A:0.45, C:0.16, G:0.12, T:0.26
Consensus pattern (83 bp):
CACATAACAAAACAAATAGTAGACATATTACATGATTTAAAAAACAATCACATGCGCATCATTGG
TACAAAATAATATGGCTA
Found at i:64840643 original size:14 final size:14
Alignment explanation
Indices: 64840624--64840652 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
64840614 AACATAGCTT
64840624 AGTAAGTCCTAAAC
1 AGTAAGTCCTAAAC
64840638 AGTAAGTCCTAAAC
1 AGTAAGTCCTAAAC
64840652 A
1 A
64840653 AATAAACAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.21, G:0.14, T:0.21
Consensus pattern (14 bp):
AGTAAGTCCTAAAC
Found at i:64841299 original size:43 final size:43
Alignment explanation
Indices: 64841215--64841300 Score: 102
Period size: 43 Copynumber: 2.0 Consensus size: 43
64841205 AAATCGTACA
* **
64841215 ATGCCAATGTCCCAGACGTGGTCTTACATGTAGTCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTACACACATATCG
* * *
64841258 ATGCCACTGTCCTAGACAG-GGTCTTACACGTACACATATATCG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGTACACACATATCG
64841301 GAATCACATA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
43 35 0.97
44 1 0.03
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGTACACACATATCG
Found at i:64843857 original size:27 final size:28
Alignment explanation
Indices: 64843819--64843873 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 28
64843809 TAGTAACAGC
*
64843819 ACAGTGTGGGCCTTAA-CCCAATA-AGTA
1 ACAGTGTCGGCC-TAAGCCCAATACAGTA
64843846 ACAGTGTCGGCCTAAGCCCAATACAGTA
1 ACAGTGTCGGCCTAAGCCCAATACAGTA
64843874 TCAAAATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 3 0.12
27 18 0.72
28 4 0.16
ACGTcount: A:0.33, C:0.25, G:0.22, T:0.20
Consensus pattern (28 bp):
ACAGTGTCGGCCTAAGCCCAATACAGTA
Found at i:64844176 original size:32 final size:32
Alignment explanation
Indices: 64844106--64844177 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
64844096 TACACGGCTT
* **
64844106 ACAGCCATCAGTAGCGGTAATTTGATCGGTAC
1 ACAGCCATCAGTAGCGGTAATATGATCGCCAC
* **
64844138 AAAGCCATCAGTAGTTGTAATATGATCGCCAC
1 ACAGCCATCAGTAGCGGTAATATGATCGCCAC
64844170 ACAGCCAT
1 ACAGCCAT
64844178 GGGCAAATAT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.24
Consensus pattern (32 bp):
ACAGCCATCAGTAGCGGTAATATGATCGCCAC
Found at i:64844678 original size:27 final size:25
Alignment explanation
Indices: 64844647--64844734 Score: 95
Period size: 27 Copynumber: 3.3 Consensus size: 25
64844637 CAAAACAGTC
64844647 ATTTTAACCTACAGGGGTATTTCGATA
1 ATTTT-ACCTACAGGGGTATTTC-ATA
*
64844674 ATTTTACTCTACAAGGGTATTTCAATA
1 ATTTTAC-CTACAGGGGTATTTC-ATA
**
64844701 ATTTTACAAATCAGGGGTATTTCAGTA
1 ATTTTACCTA-CAGGGGTATTTCA-TA
64844728 ATTTTAC
1 ATTTTAC
64844735 AAGCTAGGGG
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
26 4 0.08
27 49 0.92
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.40
Consensus pattern (25 bp):
ATTTTACCTACAGGGGTATTTCATA
Found at i:64844735 original size:27 final size:26
Alignment explanation
Indices: 64844658--64844832 Score: 136
Period size: 27 Copynumber: 6.5 Consensus size: 26
64844648 TTTTAACCTA
* **
64844658 CAGGGGTATTTCGATAATTTTACTCT
1 CAGGGGTATTTCGGTAATTTTACAAT
* **
64844684 ACAAGGGTATTTCAATAATTTTACAAAT
1 -CAGGGGTATTTCGGTAATTTTAC-AAT
* *
64844712 CAGGGGTATTTCAGTAATTTTACAAG
1 CAGGGGTATTTCGGTAATTTTACAAT
*
64844738 CTAGGGGTATTTCGGTAAATTTACAAT
1 C-AGGGGTATTTCGGTAATTTTACAAT
* * *
64844765 CCAAGGGTATTTTGGT-ATTTTACAAA
1 -CAGGGGTATTTCGGTAATTTTACAAT
** * *
64844791 CTAGAAGTATTTTGGTAATTTTACAAAC
1 C-AGGGGTATTTCGGTAATTTTAC-AAT
*
64844819 CGGGGGTATTTCGG
1 CAGGGGTATTTCGG
64844833 CCCAATAGAT
Statistics
Matches: 120, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
25 1 0.01
26 22 0.18
27 92 0.77
28 5 0.04
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.37
Consensus pattern (26 bp):
CAGGGGTATTTCGGTAATTTTACAAT
Found at i:64844826 original size:53 final size:54
Alignment explanation
Indices: 64844690--64844830 Score: 158
Period size: 53 Copynumber: 2.6 Consensus size: 54
64844680 CTCTACAAGG
** * * **
64844690 GTATTTCAATAATTTTACAAATCAGGGGTATTTCAGTAATTTTACAAGCTAGGG
1 GTATTTCGGTAATTTTACAAACCAGGGGTATTTCAGTAATTTTACAAACTAGAA
* * * **
64844744 GTATTTCGGTAAATTTACAATCCAAGGGTATTTTGGT-ATTTTACAAACTAGAA
1 GTATTTCGGTAATTTTACAAACCAGGGGTATTTCAGTAATTTTACAAACTAGAA
* *
64844797 GTATTTTGGTAATTTTACAAACCGGGGGTATTTC
1 GTATTTCGGTAATTTTACAAACCAGGGGTATTTC
64844831 GGCCCAATAG
Statistics
Matches: 70, Mismatches: 17, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
53 41 0.59
54 29 0.41
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.38
Consensus pattern (54 bp):
GTATTTCGGTAATTTTACAAACCAGGGGTATTTCAGTAATTTTACAAACTAGAA
Found at i:64863773 original size:28 final size:28
Alignment explanation
Indices: 64863733--64863788 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
64863723 TAGTAACAGC
* *
64863733 ACAGTGTGGGCCTTAA-CCCAATATAGTA
1 ACAGTGTCGGCC-TAAGCCCAATACAGTA
64863761 ACAGTGTCGGCCTAAGCCCAATACAGTA
1 ACAGTGTCGGCCTAAGCCCAATACAGTA
64863789 TCAGAATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.12
28 22 0.88
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.21
Consensus pattern (28 bp):
ACAGTGTCGGCCTAAGCCCAATACAGTA
Found at i:64864073 original size:32 final size:32
Alignment explanation
Indices: 64864023--64864085 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 32
64864013 CACGGCTTAC
* *
64864023 AGCCATCAGTAGCAGTAATTTGATCGACACAA
1 AGCCATCAGTAACAGTAATATGATCGACACAA
** *
64864055 AGCCATCAGTAATTGTAATATGATCGGCACA
1 AGCCATCAGTAACAGTAATATGATCGACACA
64864086 CAACCATGGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.24
Consensus pattern (32 bp):
AGCCATCAGTAACAGTAATATGATCGACACAA
Found at i:64869330 original size:47 final size:49
Alignment explanation
Indices: 64869279--64869505 Score: 136
Period size: 47 Copynumber: 4.8 Consensus size: 49
64869269 GAATTGACGG
*
64869279 TTAAGGATACCATGTAAGACCATGTTAAGACATGGCATCGACA-T-TGA
1 TTAAGGATACCATGTAAGACCATGTTAAGACATGGCATCGACACTAAGA
** * * * *
64869326 TTAAGGACT-CCATGTAAGACCACATCAAGATATGGCATTGGCACTAAGA
1 TTAAGGA-TACCATGTAAGACCATGTTAAGACATGGCATCGACACTAAGA
* ** ** * *
64869375 -CAAGGATACCATGTAAGACCATGTTTGGAACATATCATTTG---GTAAGA
1 TTAAGGATACCATGTAAGACCATGTTAAG-ACATGGCA-TCGACACTAAGA
** * *
64869422 -TAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTG---GTAAGA
1 TTAAGGATACCATGTAAGACCATGTTAAG-ACATGGCA-TCGACACTAAGA
* * *
64869469 -TAAGGATATCATGTAAGACCATGTCAAGGCATGGCAT
1 TTAAGGATACCATGTAAGACCATGTTAAGACATGGCAT
64869506 TGATAAGTTC
Statistics
Matches: 149, Mismatches: 25, Indels: 14
0.79 0.13 0.07
Matches are distributed among these distances:
45 1 0.01
46 7 0.05
47 109 0.73
48 22 0.15
49 7 0.05
50 3 0.02
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (49 bp):
TTAAGGATACCATGTAAGACCATGTTAAGACATGGCATCGACACTAAGA
Found at i:64869534 original size:54 final size:54
Alignment explanation
Indices: 64869470--64869687 Score: 224
Period size: 54 Copynumber: 4.0 Consensus size: 54
64869460 TTGGTAAGAT
* * * *
64869470 AAGGATATCATGTAAGACCATGTCAAGGCATGGCATTGATAAGTTCTATATGGC
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGA
* * * * *
64869524 AAGGAAATCATGTAAGACCATGTCAAGACATGGAATTAATGAGTTACTATAAGGA
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGA
* * * *
64869579 AATGG-TCTCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGA
1 AA-GGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGA
* * * * * * *
64869632 AAGGATACCACGTAAGACCATGCCAAGACATCGCAATGCTAAGTTCAAAAAGGA
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGA
64869686 AA
1 AA
64869688 AGGTTCTCGA
Statistics
Matches: 137, Mismatches: 23, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
52 2 0.01
53 42 0.31
54 49 0.36
55 42 0.31
56 2 0.01
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.22
Consensus pattern (54 bp):
AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGA
Found at i:64874994 original size:47 final size:47
Alignment explanation
Indices: 64874934--64875051 Score: 200
Period size: 47 Copynumber: 2.5 Consensus size: 47
64874924 ACATTGGTAC
64874934 TAAGATAAGGATACCATGTAAGACCATCTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATCTTTGGAACATGGCATTTGG
* *
64874981 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATCTTTGGAACATGGCATTTGG
* *
64875028 TAAGATATGGATATCATGTAAGAC
1 TAAGATAAGGATACCATGTAAGAC
64875052 TATGCCAAGG
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.27
Consensus pattern (47 bp):
TAAGATAAGGATACCATGTAAGACCATCTTTGGAACATGGCATTTGG
Found at i:64875156 original size:55 final size:53
Alignment explanation
Indices: 64875042--64875230 Score: 197
Period size: 55 Copynumber: 3.5 Consensus size: 53
64875032 ATATGGATAT
* * * *
64875042 CATGTAAGACTATGCCAAGGCATGGAATTGATAAGTTCTATAAGGCAAGGAAAT-
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGG--ATC
* *
64875096 CATGTAAGACCATGTCAAGACATGGCATTAATGAGTTACTATAAGGCAAAGG-TC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC-AAGGATC
* *
64875150 GCATGTAAGACCATGCCAA-ATCATGGCATTGGTGATTTC-ATAAGGCAAGGATAC
1 -CATGTAAGACCATGCCAAGA-CATGGCATTGATGAGTTCTATAAGGCAAGGAT-C
* *
64875204 CACGTAAGACCATGTCAAGACATGGCA
1 CATGTAAGACCATGCCAAGACATGGCA
64875231 ATGGTAAGTT
Statistics
Matches: 115, Mismatches: 12, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
52 4 0.03
53 32 0.28
54 35 0.30
55 40 0.35
56 4 0.03
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (53 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGATC
Found at i:64875216 original size:53 final size:54
Alignment explanation
Indices: 64875036--64875230 Score: 200
Period size: 54 Copynumber: 3.6 Consensus size: 54
64875026 GGTAAGATAT
* * * * * *
64875036 GGATATCATGTAAGACTATGCCAAGGCATGGAATTGATAAGTTCTATAAGGCAA
1 GGATACCATGTAAGACCATGCCAAGACATGGCATTGATGATTTCTATAAGGCAA
* * * * *
64875090 GGAAATCATGTAAGACCATGTCAAGACATGGCATTAATGAGTTACTATAAGGCAAA
1 GGATACCATGTAAGACCATGCCAAGACATGGCATTGATGA-TTTCTATAAGGC-AA
*
64875146 GG-T-CGCATGTAAGACCATGCCAA-ATCATGGCATTGGTGATTTC-ATAAGGCAA
1 GGATAC-CATGTAAGACCATGCCAAGA-CATGGCATTGATGATTTCTATAAGGCAA
* *
64875198 GGATACCACGTAAGACCATGTCAAGACATGGCA
1 GGATACCATGTAAGACCATGCCAAGACATGGCA
64875231 ATGGTAAGTT
Statistics
Matches: 117, Mismatches: 17, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
52 4 0.03
53 31 0.26
54 39 0.33
55 39 0.33
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (54 bp):
GGATACCATGTAAGACCATGCCAAGACATGGCATTGATGATTTCTATAAGGCAA
Found at i:64881694 original size:79 final size:79
Alignment explanation
Indices: 64881563--64881720 Score: 316
Period size: 79 Copynumber: 2.0 Consensus size: 79
64881553 AATTTTTTTA
64881563 ATTTGGTGAATATTTTGAGTTATTTCATTGTTGAAAGCTTGTGATTTTTGTTGTTTGATGATGAA
1 ATTTGGTGAATATTTTGAGTTATTTCATTGTTGAAAGCTTGTGATTTTTGTTGTTTGATGATGAA
64881628 ATATGAAAGATATG
66 ATATGAAAGATATG
64881642 ATTTGGTGAATATTTTGAGTTATTTCATTGTTGAAAGCTTGTGATTTTTGTTGTTTGATGATGAA
1 ATTTGGTGAATATTTTGAGTTATTTCATTGTTGAAAGCTTGTGATTTTTGTTGTTTGATGATGAA
64881707 ATATGAAAGATATG
66 ATATGAAAGATATG
64881721 TTTTAGATTA
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 79 1.00
ACGTcount: A:0.28, C:0.03, G:0.23, T:0.47
Consensus pattern (79 bp):
ATTTGGTGAATATTTTGAGTTATTTCATTGTTGAAAGCTTGTGATTTTTGTTGTTTGATGATGAA
ATATGAAAGATATG
Found at i:64890352 original size:34 final size:34
Alignment explanation
Indices: 64890280--64890355 Score: 100
Period size: 34 Copynumber: 2.2 Consensus size: 34
64890270 GTGCATATTG
**
64890280 TACTGAAATGGGCTAAGGCCCAAACTGCCACTGT
1 TACTGAAATGGGCTAAGGCCCAAACTGCCACTAC
**
64890314 TACTGAAATGGGC-ACAGGCCCAAACTGCTTCTAC
1 TACTGAAATGGGCTA-AGGCCCAAACTGCCACTAC
64890348 TACTGAAA
1 TACTGAAA
64890356 GAGGGGTTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
33 1 0.03
34 36 0.97
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (34 bp):
TACTGAAATGGGCTAAGGCCCAAACTGCCACTAC
Found at i:64890727 original size:30 final size:30
Alignment explanation
Indices: 64890693--64890755 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
64890683 AATTACCAAG
64890693 CAAATGCCTCTAAAATAATAAAAAAATTAA
1 CAAATGCCTCTAAAATAATAAAAAAATTAA
* * *
64890723 CAAATGCCTTTAAAATAATAAGAAATTTAA
1 CAAATGCCTCTAAAATAATAAAAAAATTAA
64890753 CAA
1 CAA
64890756 TAAAATTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.57, C:0.13, G:0.05, T:0.25
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAAAAAAATTAA
Found at i:64901515 original size:220 final size:220
Alignment explanation
Indices: 64901133--64901569 Score: 820
Period size: 220 Copynumber: 2.0 Consensus size: 220
64901123 GTTTTCGGCC
64901133 AATTAAGGCTAAAAATACCGTTGTGCACGAAAATGCACATTCTGCACTCTAATCATCCAAATGCA
1 AATTAAGGCTAAAAATACCGTTGTGCACGAAAATGCACATTCTGCACTCTAATCATCCAAATGCA
64901198 CCATATTCATTAACAACTGTCTCACGAGTGCTCGCAAGCTCACGAGTTCACAAAATACCAACGTT
66 CCATATTCATTAACAACTGTCTCACGAGTGCTCGCAAGCTCACGAGTTCACAAAATACCAACGTT
* *
64901263 TCGGTATTTTGGCTTTTACCGATTTAGTCTAAGGGAGGGTGTCGTTTACACACCTGGTTGATGAC
131 TCGGTATTTCGGCTTTTACCGATTCAGTCTAAGGGAGGGTGTCGTTTACACACCTGGTTGATGAC
64901328 GATTGATGACAATATCTCCCACACG
196 GATTGATGACAATATCTCCCACACG
64901353 AATTAAGGCTAAAAATACCGTTGTGCACGAAAATGCACATTCTGCACTCTAATCATCCAAATGCA
1 AATTAAGGCTAAAAATACCGTTGTGCACGAAAATGCACATTCTGCACTCTAATCATCCAAATGCA
* **
64901418 CCATATTCATTAACAACTGTCTCACGAGTGCTCGCACGCTTGCGAGTTCACAAAATACCAACGTT
66 CCATATTCATTAACAACTGTCTCACGAGTGCTCGCAAGCTCACGAGTTCACAAAATACCAACGTT
64901483 TCGGTATTTCGGCTTTTACCGATTCAGTCTAAGGGAGGGTGTCGTTTACACACCTGGTTGATGAC
131 TCGGTATTTCGGCTTTTACCGATTCAGTCTAAGGGAGGGTGTCGTTTACACACCTGGTTGATGAC
*
64901548 GATTGATGACGATATCTCCCAC
196 GATTGATGACAATATCTCCCAC
64901570 GCGATAATCC
Statistics
Matches: 211, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
220 211 1.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (220 bp):
AATTAAGGCTAAAAATACCGTTGTGCACGAAAATGCACATTCTGCACTCTAATCATCCAAATGCA
CCATATTCATTAACAACTGTCTCACGAGTGCTCGCAAGCTCACGAGTTCACAAAATACCAACGTT
TCGGTATTTCGGCTTTTACCGATTCAGTCTAAGGGAGGGTGTCGTTTACACACCTGGTTGATGAC
GATTGATGACAATATCTCCCACACG
Found at i:64906312 original size:27 final size:27
Alignment explanation
Indices: 64906281--64906458 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
64906271 TAAATTGTAC
64906281 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
64906308 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
64906334 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
64906362 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
64906390 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
64906417 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
64906444 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
64906459 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:64906395 original size:82 final size:81
Alignment explanation
Indices: 64906282--64906437 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
64906272 AAATTGTACA
* *
64906282 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
64906346 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
64906363 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
64906428 TGCGAGTTGA
65 TGCGAATTGA
64906438 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:64906449 original size:82 final size:81
Alignment explanation
Indices: 64906278--64906458 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
64906268 GATTAAATTG
* *
64906278 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
64906343 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
64906359 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
64906423 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
64906441 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
64906459 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:64910929 original size:185 final size:186
Alignment explanation
Indices: 64910616--64910957 Score: 623
Period size: 185 Copynumber: 1.8 Consensus size: 186
64910606 TCGGGGTGTT
64910616 ACACGGGTAGCTCACAAGCTCGTGTCTTTTAAGGGTGTCGACCAAGGCTTTCACGAACTCACACG
1 ACACGGGTAGCTCACAAGCTCGTGTCTTTTAAGGGTGTCGACCAAGGCTTTCACGAACTCACACG
* *
64910681 GCCTGGCCATTGACCTATATGGCCGTGTGCAATTTAACGGATTGAACACAGCCTGGCAATCACGT
66 GCCTGGCCATTGACCCACATGGCCGTGTGCAATTTAACGGATTGAACACAGCCTGGCAATCACGT
64910746 CACACGGCCGTGTCACACGAGCGTGTCTGAGAAGATGACCTGGCTTAAGCCTTGAC
131 CACACGGCCGTGTCACACGAGCGTGTCTGAGAAGATGACCTGGCTTAAGCCTTGAC
*
64910802 ACACGGGTAGCTCACAAGCTCGTGTCTTTTAAGGGTGTCGACCAAGGCTTTCATG-ACTCACACG
1 ACACGGGTAGCTCACAAGCTCGTGTCTTTTAAGGGTGTCGACCAAGGCTTTCACGAACTCACACG
* *
64910866 GCCTGGCCATTGGCCCACATGGTCGTGTGCAATTTAACGGATTGAACACAGCCTGGCAATCACGT
66 GCCTGGCCATTGACCCACATGGCCGTGTGCAATTTAACGGATTGAACACAGCCTGGCAATCACGT
*
64910931 CATACGGCCGTGTCACACGAGCGTGTC
131 CACACGGCCGTGTCACACGAGCGTGTC
64910958 CCTGCTGAGC
Statistics
Matches: 150, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
185 96 0.64
186 54 0.36
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (186 bp):
ACACGGGTAGCTCACAAGCTCGTGTCTTTTAAGGGTGTCGACCAAGGCTTTCACGAACTCACACG
GCCTGGCCATTGACCCACATGGCCGTGTGCAATTTAACGGATTGAACACAGCCTGGCAATCACGT
CACACGGCCGTGTCACACGAGCGTGTCTGAGAAGATGACCTGGCTTAAGCCTTGAC
Found at i:64921329 original size:26 final size:26
Alignment explanation
Indices: 64921293--64921345 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
64921283 CAAACTACAC
64921293 TTATGTGTTAAGTTGATTAAATTCTA
1 TTATGTGTTAAGTTGATTAAATTCTA
64921319 TTATGTGTTAAGTTGATTAAATTCTA
1 TTATGTGTTAAGTTGATTAAATTCTA
64921345 T
1 T
64921346 GTTTATAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.04, G:0.15, T:0.51
Consensus pattern (26 bp):
TTATGTGTTAAGTTGATTAAATTCTA
Found at i:64922043 original size:12 final size:13
Alignment explanation
Indices: 64922026--64922057 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
64922016 GCAAATGTTA
64922026 AGTTTTG-TGCAT
1 AGTTTTGATGCAT
64922038 AGTTTTGATGCAT
1 AGTTTTGATGCAT
64922051 -GTTTTGA
1 AGTTTTGA
64922058 AATGTTCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (13 bp):
AGTTTTGATGCAT
Found at i:64952603 original size:6 final size:6
Alignment explanation
Indices: 64952573--64952684 Score: 70
Period size: 6 Copynumber: 18.3 Consensus size: 6
64952563 AAGAAACATT
* * *
64952573 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
64952622 ATCAGA ATTAGTG A-CAGA ATCAGA CTCAGT ATCAGGTA A-CAGA ATCAGA
1 ATCAGA ATCAG-A ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
*
64952671 ATTAGA ATCAGA AT
1 ATCAGA ATCAGA AT
64952685 GTGAATGAAA
Statistics
Matches: 80, Mismatches: 16, Indels: 20
0.69 0.14 0.17
Matches are distributed among these distances:
5 5 0.06
6 65 0.81
7 8 0.10
8 2 0.03
ACGTcount: A:0.46, C:0.14, G:0.20, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:64952641 original size:43 final size:43
Alignment explanation
Indices: 64952594--64952675 Score: 107
Period size: 43 Copynumber: 1.9 Consensus size: 43
64952584 AATCAAAATG
64952594 AGAATCAGAATCAGGTGA-CA-G-AATCAGAATCAGAATTAGTGAC
1 AGAATCAGAATCA-GT-ATCAGGTAA-CAGAATCAGAATTAGTGAC
*
64952637 AGAATCAGACTCAGTATCAGGTAACAGAATCAGAATTAG
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATTAG
64952676 AATCAGAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
41 1 0.03
42 4 0.11
43 28 0.80
44 2 0.06
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.20
Consensus pattern (43 bp):
AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATTAGTGAC
Found at i:64953329 original size:27 final size:27
Alignment explanation
Indices: 64953299--64953388 Score: 103
Period size: 27 Copynumber: 3.3 Consensus size: 27
64953289 GGGGCAAAAT
* *
64953299 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
64953326 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
64953353 GGT-ATTTCTACCCTA-ATGGGCTATTTC
1 GGTAATTT-TACCCTACAAGGG-TATTTC
64953380 GGTAATTTT
1 GGTAATTTT
64953389 GTAAATCGAG
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
26 7 0.13
27 43 0.80
28 4 0.07
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:64955029 original size:92 final size:92
Alignment explanation
Indices: 64954872--64955052 Score: 335
Period size: 92 Copynumber: 2.0 Consensus size: 92
64954862 CGTGTCACAT
*
64954872 TGAAGTGTTTTTCGAAAACCATGTTTCCATTTAAAACCCTTCTTAATAATTAAAAACTTATACCC
1 TGAAGTGTTTTTCGAAAACCATGTTTCCATTAAAAACCCTTCTTAATAATTAAAAACTTATACCC
64954937 TTTTTAAACCTTGTTAGAAAACCTCAG
66 TTTTTAAACCTTGTTAGAAAACCTCAG
* *
64954964 TGAAGTGTTTTTCGAAAACCATGTTTCCATTAAAAACCTTTCTTAATAATTAAAAATTTATACCC
1 TGAAGTGTTTTTCGAAAACCATGTTTCCATTAAAAACCCTTCTTAATAATTAAAAACTTATACCC
64955029 TTTTTAAACCTTGTTAGAAAACCT
66 TTTTTAAACCTTGTTAGAAAACCT
64955053 TAGCTGAATA
Statistics
Matches: 86, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
92 86 1.00
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.38
Consensus pattern (92 bp):
TGAAGTGTTTTTCGAAAACCATGTTTCCATTAAAAACCCTTCTTAATAATTAAAAACTTATACCC
TTTTTAAACCTTGTTAGAAAACCTCAG
Found at i:64956731 original size:61 final size:61
Alignment explanation
Indices: 64956663--64956784 Score: 201
Period size: 61 Copynumber: 2.0 Consensus size: 61
64956653 TCAAAGCAGG
64956663 TCCAAGATGATTT-GACATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGA
1 TCCAAGATGATTTAGA-ATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGA
* * *
64956724 TCCAAGATGATTTAGAATTCTTGTGTTTACGAGGAGTAAATTGAAGACATAGCAGATCTGA
1 TCCAAGATGATTTAGAATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGA
64956785 CCTTCAGGTG
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
61 55 0.96
62 2 0.04
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (61 bp):
TCCAAGATGATTTAGAATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGA
Found at i:64957104 original size:220 final size:220
Alignment explanation
Indices: 64956722--64957359 Score: 1008
Period size: 220 Copynumber: 2.9 Consensus size: 220
64956712 TAGCAGATCT
* *
64956722 GATCCAAGATGATTTAGAATTCTTGTGTTTACGAGGAGTAAATTGAAGACATAGCAGATCTGACC
1 GATCCAAGATGATTTAGAATTCTTGTGTTTACGAGGAGTAAATCGAAGAAATAGCAGATCTGACC
* *
64956787 TTCAGGTGTTTACACTGAAGTAGATCCAACATGATTTGGCATCTCTGTATTGTCAGAGAACAAAT
66 TTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAAT
* *
64956852 CGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGATCAGATCGAAGATATAGCAGATCTGAC
131 CGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGAC
*
64956917 CTTTGGATGTTTTCACATTGAAGCA
196 CTTTGGATGTTTTCACATCGAAGCA
* * * * * *
64956942 GATCCAAGATGATTTGGAATTCTTGTGTTTACAATGAGTACATCAAAGAAATAGTAGATCTGACC
1 GATCCAAGATGATTTAGAATTCTTGTGTTTACGAGGAGTAAATCGAAGAAATAGCAGATCTGACC
64957007 TTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAAT
66 TTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAAT
* * * *
64957072 TGAAAAAACAGATTTGGCATCTCCATATTCGACGAAGAGCAGATCAAAGACATAGCAGATCTGAC
131 CGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGAC
64957137 CTTTGGATGTTTTCACATCGAAGCA
196 CTTTGGATGTTTTCACATCGAAGCA
* * * *
64957162 GATCCAAGATGATTTAGAATTCTTGTGTTTACGAGGAG-AATATGGAAGATATAGCATATTTGAC
1 GATCCAAGATGATTTAGAATTCTTGTGTTTACGAGGAGTAA-ATCGAAGAAATAGCAGATCTGAC
** *
64957226 CTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGTGTCTCTATATTGTCAGAGAACAAA
65 CTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
* * * *
64957291 TCGAAGAAACATATTTGGCATCTCCATATTTGACGGAGAGAAGATCGAAGACATAGCAGATCTGC
130 TCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGA
64957356 CCTT
195 CCTT
64957360 CAGGTGTTTA
Statistics
Matches: 379, Mismatches: 38, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
219 1 0.00
220 378 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (220 bp):
GATCCAAGATGATTTAGAATTCTTGTGTTTACGAGGAGTAAATCGAAGAAATAGCAGATCTGACC
TTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAAT
CGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGAC
CTTTGGATGTTTTCACATCGAAGCA
Found at i:64957445 original size:43 final size:43
Alignment explanation
Indices: 64957391--64957576 Score: 116
Period size: 43 Copynumber: 4.3 Consensus size: 43
64957381 ATCGAAGATG
*
64957391 ATTTGGCATCTCTGTATTGTCAGAGAGTGGATTGAAGAAACAT
1 ATTTGGCATCTCTGTATTGTCAGAGAGTGGATCGAAGAAACAT
** * * ** *
64957434 ATTTGGCATCTCCATATTTGACGGAGAGAAGATCGAAGACATAGCAG
1 ATTTGGCATCTCTGTA-TTGTCAGAGAGTGGATCGAAGA-A-A-CAT
* * * * *
64957481 ATCTGCCCT-TCAGGTGT-TTACTCTGA-AGTGGATCGAAG----AT
1 ATTTGGCATCTC---TGTATT-GTCAGAGAGTGGATCGAAGAAACAT
*
64957521 GATTTGGCATCTCTGTATTGTCAGAGAGTGGATTGAAGAAACAT
1 -ATTTGGCATCTCTGTATTGTCAGAGAGTGGATCGAAGAAACAT
64957565 ATTTGGCATCTC
1 ATTTGGCATCTC
64957577 CATATTTGAC
Statistics
Matches: 102, Mismatches: 25, Indels: 32
0.64 0.16 0.20
Matches are distributed among these distances:
39 7 0.07
40 14 0.14
41 6 0.06
42 2 0.02
43 26 0.25
44 19 0.19
45 1 0.01
46 3 0.03
47 20 0.20
48 3 0.03
49 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (43 bp):
ATTTGGCATCTCTGTATTGTCAGAGAGTGGATCGAAGAAACAT
Found at i:64957630 original size:131 final size:131
Alignment explanation
Indices: 64957197--64957621 Score: 679
Period size: 131 Copynumber: 3.2 Consensus size: 131
64957187 TGTTTACGAG
* * * * * * ** *
64957197 GAGAATATGGAAGATATAGCATATTTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
1 GAGAAGATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACTCTGAAGTGGATCGAAGATGAT
** * **** *
64957262 TTGGTGTCTCTATATTGTCAGAGAACAAATCGAAGAAACATATTTGGCATCTCCATATTTGACGG
66 TTGGCATCTCTGTATTGTCAGAGAGTGGATTGAAGAAACATATTTGGCATCTCCATATTTGACGG
64957327 A
131 A
*
64957328 GAGAAGATCGAAGACATAGCAGATCTGCCCTTCAGGTGTTTACTCTGAAGTGGATCGAAGATGAT
1 GAGAAGATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACTCTGAAGTGGATCGAAGATGAT
64957393 TTGGCATCTCTGTATTGTCAGAGAGTGGATTGAAGAAACATATTTGGCATCTCCATATTTGACGG
66 TTGGCATCTCTGTATTGTCAGAGAGTGGATTGAAGAAACATATTTGGCATCTCCATATTTGACGG
64957458 A
131 A
*
64957459 GAGAAGATCGAAGACATAGCAGATCTGCCCTTCAGGTGTTTACTCTGAAGTGGATCGAAGATGAT
1 GAGAAGATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACTCTGAAGTGGATCGAAGATGAT
64957524 TTGGCATCTCTGTATTGTCAGAGAGTGGATTGAAGAAACATATTTGGCATCTCCATATTTGACGG
66 TTGGCATCTCTGTATTGTCAGAGAGTGGATTGAAGAAACATATTTGGCATCTCCATATTTGACGG
64957589 A
131 A
64957590 GAGAAGATCGAAGACATAGCAGATCTGACCTT
1 GAGAAGATCGAAGACATAGCAGATCTGACCTT
64957622 TGGATGTTTT
Statistics
Matches: 275, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
131 275 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.28
Consensus pattern (131 bp):
GAGAAGATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACTCTGAAGTGGATCGAAGATGAT
TTGGCATCTCTGTATTGTCAGAGAGTGGATTGAAGAAACATATTTGGCATCTCCATATTTGACGG
A
Found at i:64958046 original size:280 final size:279
Alignment explanation
Indices: 64957545--64958395 Score: 1207
Period size: 280 Copynumber: 3.0 Consensus size: 279
64957535 GTATTGTCAG
64957545 AGAGTGGATTGAAGAAACATATTTGGCATCTCCATATTTGACGGAGAGAAGATCGAAGACATAGC
1 AGAGTGGATTGAAGAAACATATTTGGCATCTCCATATTTGACGGAGAGAAGATCGAAGACATAGC
* *
64957610 AGATCTGACCTTTGGATGTTTTCACATCGAAGCAGGTCCAAGATGATTTGCCATTCTTGTGTTTA
66 AGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTA
* *
64957675 CAAGGAGCAAATCGAAGATATAGCAGATCTGGCCTTCAGGTGTTTACACTAAAGTAGATCCAAGA
131 CAAGGAGCAAATCGAAGATATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGA
* * **
64957740 TGATTTGGCCTCTCTGTATTGTCAGAGAACAAATCAAAGAAATAGATTTGGCATCTTTATATTCG
196 TGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTC-
*
64957805 ACGGAGAGCAGATCGAAGAN
260 ACGGAGAGCAGATCGAAGAT
* *
64957825 AGAGTGGATTGAAGAAACAGATTTGGCATCTCCATATTTGACGGAGAGCAGATCGAAGACATAGC
1 AGAGTGGATTGAAGAAACATATTTGGCATCTCCATATTTGACGGAGAGAAGATCGAAGACATAGC
* * *
64957890 AGATCTGACCTTTGGACGATTTCACATCGAAGCAGATCCAAAATGATTTGGCATTCTTGTGTTTA
66 AGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTA
* * * *
64957955 CAAAGAGCAAATCGAAGACATAGTAGATTTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGA
131 CAAGGAGCAAATCGAAGATATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGA
* **** * *
64958020 TGATTTGGCATCCCTGTATTGTCAGAGAGTGGATTGAAGAAACAGATTTGGCATCTCCATATTTC
196 TGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATA-TTC
64958085 ACGGAGAGCAGATCGAAGACAT
260 ACGGAGAGCAGATCGAAG--AT
* * * * *
64958107 AGCAGATCTGACCTTTGGACGATTTCACATATTTGGCATCTCCATATTTGACGCAGAGTAGATCG
1 AG-AG-T-GGA---TT-GAAGA---AACATATTTGGCATCTCCATATTTGACGGAGAGAAGATCG
* *
64958172 AAGACGTAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCTAAGATGATTTGGCATT
56 AAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATT
*
64958237 CTTCTGTTTACAAGGAGCAAATCGAAGATATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGT
121 CTTGTGTTTACAAGGAGCAAATCGAAGATATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGT
** * *
64958302 AGATCCAAGATGATTTTCCATCTCTGTATTGTTAGAGAACAAATCGAAGAAATAGATTTGGAATC
186 AGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATC
* * *
64958367 TCCATATTCAATGGAGAGAAGTTCGAAGA
251 TCCATATTC-ACGGAGAGCAGATCGAAGA
64958396 AATAGCAGAT
Statistics
Matches: 502, Mismatches: 55, Indels: 18
0.87 0.10 0.03
Matches are distributed among these distances:
280 250 0.50
281 3 0.01
282 3 0.01
283 2 0.00
284 1 0.00
285 2 0.00
288 2 0.00
289 4 0.01
290 1 0.00
291 3 0.01
292 231 0.46
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (279 bp):
AGAGTGGATTGAAGAAACATATTTGGCATCTCCATATTTGACGGAGAGAAGATCGAAGACATAGC
AGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTA
CAAGGAGCAAATCGAAGATATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGA
TGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTCA
CGGAGAGCAGATCGAAGAT
Found at i:64958182 original size:72 final size:72
Alignment explanation
Indices: 64958065--64958208 Score: 234
Period size: 72 Copynumber: 2.0 Consensus size: 72
64958055 GAAGAAACAG
*
64958065 ATTTGGCATCTCCATATTTCACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGACGAT
1 ATTTGGCATCTCCATATTTCACGCAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGACGAT
64958130 TTCACAT
66 TTCACAT
* * * * *
64958137 ATTTGGCATCTCCATATTTGACGCAGAGTAGATCGAAGACGTAGCAGATCTGACCTTTGGATGTT
1 ATTTGGCATCTCCATATTTCACGCAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGACGAT
64958202 TTCACAT
66 TTCACAT
64958209 CGAAGCAGAT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 66 1.00
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.30
Consensus pattern (72 bp):
ATTTGGCATCTCCATATTTCACGCAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGACGAT
TTCACAT
Found at i:64958257 original size:292 final size:291
Alignment explanation
Indices: 64957561--64958737 Score: 1446
Period size: 292 Copynumber: 4.0 Consensus size: 291
64957551 GATTGAAGAA
* *
64957561 ACATATTTGGCATCTCCATATTTGACGGAGAGAAGATCGAAGACATAGCAGATCTGACCTTTGGA
1 ACATATTTGGCATCTCCATATTTGACGCAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGA
* *
64957626 TGTTTTCACATCGAAGCAGGTCCAAGATGATTTGCCATTCTTGTGTTTACAAGGAGCAAATCGAA
66 TGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAA
* * * *
64957691 GATATAGCAGATCTGGCCTTCAGGTGTTTACACTAAAGTAGATCCAAGATGATTTGGCCTCTCTG
131 GACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTG
* * **
64957756 TATTGTCAGAGAACAAATCAAAGAAATAGATTTGGCATCTTTATATTCGACGGAGAGCAGATCGA
196 TATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGA
* * * *
64957821 AG-ANAG-AG-T-GGA---TT-GAAGA---A
261 AGAATAGCAGATCTGACCTTTGGACGATTTC
* *
64957841 ACAGATTTGGCATCTCCATATTTGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGA
1 ACATATTTGGCATCTCCATATTTGACGCAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGA
* * * *
64957906 CGATTTCACATCGAAGCAGATCCAAAATGATTTGGCATTCTTGTGTTTACAAAGAGCAAATCGAA
66 TGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAA
* * *
64957971 GACATAGTAGATTTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCCCTG
131 GACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTG
**** *
64958036 TATTGTCAGAGAGTGGATTGAAGAAACAGATTTGGCATCTCCATATTTC-ACGGAGAGCAGATCG
196 TATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATA-TTCGACGGAGAGCAGATCG
64958100 AAGACATAGCAGATCTGACCTTTGGACGATTTC
260 AAGA-ATAGCAGATCTGACCTTTGGACGATTTC
* *
64958133 ACATATTTGGCATCTCCATATTTGACGCAGAGTAGATCGAAGACGTAGCAGATCTGACCTTTGGA
1 ACATATTTGGCATCTCCATATTTGACGCAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGA
* *
64958198 TGTTTTCACATCGAAGCAGATCTAAGATGATTTGGCATTCTTCTGTTTACAAGGAGCAAATCGAA
66 TGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAA
* **
64958263 GATATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTTCCATCTCTG
131 GACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTG
* * * * * * *
64958328 TATTGTTAGAGAACAAATCGAAGAAATAGATTTGGAATCTCCATATTCAATGGAGAGAAGTTCGA
196 TATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGA
64958393 AGAAATAGCAGATCTGACCTTTGGACGATTTC
261 AG-AATAGCAGATCTGACCTTTGGACGATTTC
**** ** *
64958425 ACAT-CGAAGCAGATCCAAAATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATA
1 ACATATTTGGCATCTCC---AT-ATTT-G-A--C----G----C-A-GAGCAGATCGAAGACATA
* * * *
64958489 GCAGATCTGACCTTTGGATGTTTTCACATTGAAACAGATCCAAGATGATTTAGAATTCTTGTGTT
48 GCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTT
* * *
64958554 TACAAGGAGTAAATTGAAGACATAGCAGATCTGACGTTCAGGTGTTTACACTGAAGTAGATCCAA
113 TACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAA
* * * *
64958619 GATGATTTGGCATCTCTGTATTTTCAGAAAACAAATCGAAAAAACAGATTTGTCATC-CACATAT
178 GATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTC-CATAT
* * * * *
64958683 TCGACAGAGAGCAGATCGAAGATATACCAGATCTAACCTTTGGATGTTTTC
242 TCGACGGAGAGCAGATCGAAGA-ATAGCAGATCTGACCTTTGGACGATTTC
64958734 ACAT
1 ACAT
64958738 CGAAGCAGAT
Statistics
Matches: 770, Mismatches: 92, Indels: 41
0.85 0.10 0.05
Matches are distributed among these distances:
280 234 0.30
281 3 0.00
282 3 0.00
283 2 0.00
284 1 0.00
285 2 0.00
288 2 0.00
289 4 0.01
291 9 0.01
292 263 0.34
293 1 0.00
294 2 0.00
295 4 0.01
296 1 0.00
297 1 0.00
299 1 0.00
303 1 0.00
307 1 0.00
308 3 0.00
309 232 0.30
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (291 bp):
ACATATTTGGCATCTCCATATTTGACGCAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGA
TGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAA
GACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTG
TATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGA
AGAATAGCAGATCTGACCTTTGGACGATTTC
Found at i:64958547 original size:89 final size:88
Alignment explanation
Indices: 64958389--64958626 Score: 318
Period size: 89 Copynumber: 2.7 Consensus size: 88
64958379 GGAGAGAAGT
* * * * * *
64958389 TCGAAGAAATAGCAGATCTGACCTTTGGACGATTTCACATCGAAGCAGATCCAAAATGATTTGGC
1 TCGAAGACATAGCAGATCTGACCTTTGGATG-TTTCACATTGAAGCAGATCCAAGATGATTTAGA
64958454 ATTCTTGTGTTTACAAGGAGCAAA
65 ATTCTTGTGTTTACAAGGAGCAAA
*
64958478 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATTGAAACAGATCCAAGATGATTTAGA
1 TCGAAGACATAGCAGATCTGACCTTTGGATG-TTTCACATTGAAGCAGATCCAAGATGATTTAGA
*
64958543 ATTCTTGTGTTTACAAGGAGTAAA
65 ATTCTTGTGTTTACAAGGAGCAAA
* * * * *
64958567 TTGAAGACATAGCAGATCTGACGTTCAGG-TGTTT-ACACTGAAGTAGATCCAAGATGATTT
1 TCGAAGACATAGCAGATCTGACCTT-TGGATGTTTCACATTGAAGCAGATCCAAGATGATTT
64958627 GGCATCTCTG
Statistics
Matches: 133, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
87 23 0.17
88 3 0.02
89 105 0.79
90 2 0.02
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.29
Consensus pattern (88 bp):
TCGAAGACATAGCAGATCTGACCTTTGGATGTTTCACATTGAAGCAGATCCAAGATGATTTAGAA
TTCTTGTGTTTACAAGGAGCAAA
Found at i:64958736 original size:309 final size:309
Alignment explanation
Indices: 64958168--64958811 Score: 950
Period size: 309 Copynumber: 2.1 Consensus size: 309
64958158 CGCAGAGTAG
* * * *
64958168 ATCGAAGACGTAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCTAAGATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAACAGATCCAAGATGATTTAG
* *
64958233 CATTCTTCTGTTTACAAGGAGCAAATCGAAGATATAGCAGATCTGACCTTCAGGTGTTTACACTG
66 AATTCTTCTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTG
* * * *
64958298 AAGTAGATCCAAGATGATTTTCCATCTCTGTATTGTTAGAGAACAAATCGAAGAAATAGATTTGG
131 AAGTAGATCCAAGATGATTTGCCATCTCTGTATTGTTAGAAAACAAATCGAAAAAACAGATTTGG
** * * *
64958363 AATCTCCATATTCAATGGAGAGAAGTTCGAAGAAATAGCAGATCTGACCTTTGGACGATTTCACA
196 AATCTCCATATTCAACAGAGAGAAGATCGAAGAAATACCAGATCTAACCTTTGGACGATTTCACA
**
64958428 TCGAAGCAGATCCAAAATGATTTGGCATTCTTGTGTTTACAAGGAGCAA
261 TCGAAGCAGATCCAAAATGATTTACCATTCTTGTGTTTACAAGGAGCAA
*
64958477 ATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATTGAAACAGATCCAAGATGATTTAG
1 ATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAACAGATCCAAGATGATTTAG
* * * *
64958542 AATTCTTGTGTTTACAAGGAGTAAATTGAAGACATAGCAGATCTGACGTTCAGGTGTTTACACTG
66 AATTCTTCTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTG
*
64958607 AAGTAGATCCAAGATGATTTGGCATCTCTGTATT-TTCAGAAAACAAATCGAAAAAACAGATTTG
131 AAGTAGATCCAAGATGATTTGCCATCTCTGTATTGTT-AGAAAACAAATCGAAAAAACAGATTTG
** * * * * *
64958671 TCATC-CACATATTCGACAGAGAGCAGATCGAAGATATACCAGATCTAACCTTTGGATGTTTTCA
195 GAATCTC-CATATTCAACAGAGAGAAGATCGAAGAAATACCAGATCTAACCTTTGGACGATTTCA
* * *
64958735 CATCGAAGCAGATCTAAGATGATTTACCATTCTTGTGTTTACAAGGAGTAA
259 CATCGAAGCAGATCCAAAATGATTTACCATTCTTGTGTTTACAAGGAGCAA
*
64958786 ATCGAAGACATAGCCGATCTGACCTT
1 ATCGAAGACATAGCAGATCTGACCTT
64958812 CAGGTGCTTA
Statistics
Matches: 299, Mismatches: 34, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
308 3 0.01
309 296 0.99
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.29
Consensus pattern (309 bp):
ATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAACAGATCCAAGATGATTTAG
AATTCTTCTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTG
AAGTAGATCCAAGATGATTTGCCATCTCTGTATTGTTAGAAAACAAATCGAAAAAACAGATTTGG
AATCTCCATATTCAACAGAGAGAAGATCGAAGAAATACCAGATCTAACCTTTGGACGATTTCACA
TCGAAGCAGATCCAAAATGATTTACCATTCTTGTGTTTACAAGGAGCAA
Found at i:64958859 original size:220 final size:220
Alignment explanation
Indices: 64958471--64959025 Score: 832
Period size: 220 Copynumber: 2.5 Consensus size: 220
64958461 TGTTTACAAG
64958471 GAGCAAATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATTGAAACAGATCCAAGATG
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATTGAAACAGATCCAAGATG
* *
64958536 ATTTAGAATTCTTGTGTTTACAAGGAGTAAATTGAAGACATAGCAGATCTGACGTTCAGGTGTTT
66 ATTTAGAATTCTTGTGTTTACAAGGAGTAAATTGAAGACATAGCAGATCTGACCTTCAGGTGCTT
* * *
64958601 ACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTTTCAGAA-AACAAATCGAAAAAACA
131 ACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCA-AAGAACAAATAGAAAAAACA
* * *
64958665 GATTTGTCATC-CACATATTCGACAGA
195 AATGTGGCATCTC-CATATTCGACAGA
* * * * * * *
64958691 GAGCAGATCGAAGATATACCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCTAAGATG
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATTGAAACAGATCCAAGATG
** * *
64958756 ATTTACCATTCTTGTGTTTACAAGGAGTAAATCGAAGACATAGCCGATCTGACCTTCAGGTGCTT
66 ATTTAGAATTCTTGTGTTTACAAGGAGTAAATTGAAGACATAGCAGATCTGACCTTCAGGTGCTT
* * *
64958821 ACTCTGAAGCGGATCCAAGATGATTTGGCATCTCTGTATTGTCAAAGAACAAATAGAAGAAACAA
131 ACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAAAGAACAAATAGAAAAAACAA
* *
64958886 ATGTGGCATCTCCATGTTCGACGGA
196 ATGTGGCATCTCCATATTCGACAGA
*
64958911 GAGCAAATCGAAGACATAGCAGATCTGGCCTTTGGATGTTTTCACATTGAAACAGATCCAAGATG
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATTGAAACAGATCCAAGATG
64958976 ATTTAGAATTCTTGTGTTTAC---GAGTAAATTGAAGACATAGCAGATCTGAC
66 ATTTAGAATTCTTGTGTTTACAAGGAGTAAATTGAAGACATAGCAGATCTGAC
64959026 GTTTGCAAAT
Statistics
Matches: 297, Mismatches: 36, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
217 27 0.09
219 2 0.01
220 267 0.90
221 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (220 bp):
GAGCAAATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATTGAAACAGATCCAAGATG
ATTTAGAATTCTTGTGTTTACAAGGAGTAAATTGAAGACATAGCAGATCTGACCTTCAGGTGCTT
ACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAAAGAACAAATAGAAAAAACAA
ATGTGGCATCTCCATATTCGACAGA
Found at i:64959223 original size:248 final size:249
Alignment explanation
Indices: 64958784--64959276 Score: 668
Period size: 248 Copynumber: 2.0 Consensus size: 249
64958774 TACAAGGAGT
* * *
64958784 AAATCGAAGACATAGCCGATCTGACCTTCAGGTGCTTACTCTGAAGCGGATCCAAGATGATTTGG
1 AAATCGAAGACATAGCAGATCTGACCTTCAGGTGCTTACTATGAAGCAGATCCAAGATGATTTGG
* *
64958849 CATCTCTGTATTGTCAAAGAACAAATAGAAGAAACAAATGTGGCATCTCCATGTTCGACGGAGAG
66 CATCTCTGTATTGTCAAAGAACAAATAGAAAAAACAAATGTGGCATCTCCATATTCGACGGAGAG
* ** *
64958914 CAAATCGAAGACATAGCAGATCTGGCCTTTGGATGTTTTCACATTGAAACAGATCCAAGATGATT
131 CAAATCAAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAACAGATCCAAGATGATT
*
64958979 TAGAATTCTTGTGTTTAC-GAGTAAATTGAAGACATAGCAGATCTGACGTTTGC
196 TAGAATTCTTGTGTTTACAGAGCAAATTGAAGACATAGCAGATCTGACGTTTGC
* * * * * *
64959032 AAATCGAAGGCATAGCAGATCTGACTTTTAGTTGTTTACTATGAAGTAGATCCAAGATGATTTGG
1 AAATCGAAGACATAGCAGATCTGACCTTCAGGTGCTTACTATGAAGCAGATCCAAGATGATTTGG
* * * * *
64959097 CATCTCTGTATTTTCAGAA-AACAAATCGAAAAAACAGATTTGTCATC-CACATATTCGACGGAG
66 CATCTCTGTATTGTCA-AAGAACAAATAGAAAAAACAAATGTGGCATCTC-CATATTCGACGGAG
* * * *
64959160 AGCAGATCAAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCATATTCAAGATGA
129 AGCAAATCAAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAACAGATCCAAGATGA
* * * *
64959225 TTTGGCATTCTTGTGTTTACAATGAGCAAATTGAAGACATCGTAGATCTGAC
194 TTTAGAATTCTTGTGTTTAC-A-GAGCAAATTGAAGACATAGCAGATCTGAC
64959277 CTTTAGGTGT
Statistics
Matches: 211, Mismatches: 29, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
247 1 0.00
248 182 0.86
249 2 0.01
251 26 0.12
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.28
Consensus pattern (249 bp):
AAATCGAAGACATAGCAGATCTGACCTTCAGGTGCTTACTATGAAGCAGATCCAAGATGATTTGG
CATCTCTGTATTGTCAAAGAACAAATAGAAAAAACAAATGTGGCATCTCCATATTCGACGGAGAG
CAAATCAAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAACAGATCCAAGATGATT
TAGAATTCTTGTGTTTACAGAGCAAATTGAAGACATAGCAGATCTGACGTTTGC
Found at i:64959713 original size:220 final size:220
Alignment explanation
Indices: 64959030--64959887 Score: 1229
Period size: 220 Copynumber: 3.9 Consensus size: 220
64959020 TCTGACGTTT
* * * * *
64959030 GCAAATCGAAGGCATAGCAGATCTGACTTTTAGTTGTTTACTA-TGAAGTAGATCCAAGATGATT
1 GCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTAC-ACTGAAGCAGATCCAAGATGATT
* * * * *
64959094 TGGCATCTCTGTATTTTCAGAAAACAAATCGAAAAAACAGATTTGTCATCCACATATTCGACGGA
65 TGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGGA
* * *
64959159 GAGCAGATCAAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCATATTCAAGATG
130 GAGCAGATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATG
*
64959224 ATTTGGCATTCTTGTGTTTACAATGA
195 ATTTGGCATTCTTGTGTTTACAAGGA
* * * * *
64959250 GCAAATTGAAGACATCGTAGATCTGACCTTTAGGTGTTTACACTAAAGCAGATCCAAGATGATTT
1 GCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTT
* * * * *
64959315 GGCATCTCTGTATTGTCCGAGAACAAATCGAAGAAATAGATTTGACATCTCCAT-TTC-AAGGTA
66 GGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGG-A
* *
64959378 GAGTAGATCGAAGACATAGTAGATCTAACCTTTGGATGCTTTT-ACATCGAAGCAGATCCAAGAT
130 GAGCAGATCGAAGACATAGCAGATCTAACCTTTGGATG-TTTTCACATCGAAGCAGATCCAAGAT
*
64959442 GATCTGGCATTCTTGTGTTTACAAGGA
194 GATTTGGCATTCTTGTGTTTACAAGGA
* ** * *
64959469 GCAAATCGTAGACATAATAGATCTGACATTCAGGTGTTTACACTGAAGCGGATCCAAGATGATTT
1 GCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTT
*
64959534 GGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGGAT
66 GGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGGAG
* *
64959599 AGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGGTCCAAGATGA
131 AGCAGATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGA
* *
64959664 TTTGTCTTTCTTGTGTTTACAAGGA
196 TTTGGCATTCTTGTGTTTACAAGGA
* * * * *
64959689 GCAAATCGAATACATAGCAGATCTGGCCTTCAAGTGTTTACACTGAAGTAGATCCAAGATGAATT
1 GCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTT
* *
64959754 GACATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGGAT
66 GGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGGAG
* * * *
64959819 AGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTTACATCAAAGCAGATCCAAGAAGA
131 AGCAGATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGA
64959884 TTTG
196 TTTG
64959888 ACATCTCTGT
Statistics
Matches: 572, Mismatches: 60, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
218 3 0.01
219 195 0.34
220 371 0.65
221 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (220 bp):
GCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTT
GGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGGAG
AGCAGATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGA
TTTGGCATTCTTGTGTTTACAAGGA
Found at i:64959929 original size:133 final size:133
Alignment explanation
Indices: 64959738--64960153 Score: 628
Period size: 133 Copynumber: 3.2 Consensus size: 133
64959728 ACACTGAAGT
* *
64959738 AGATCCAAGATGAATTGACATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATC
1 AGATCCAAGAAGATTTGACATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATC
64959803 CCCATATTCGACGGATAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTTACATCAA
66 CCCATATTCGACGGATAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTTACATCAA
64959868 AGC
131 AGC
64959871 AGATCCAAGAAGATTTGACATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATC
1 AGATCCAAGAAGATTTGACATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATC
*
64959936 CCCATATTCGACGGATAGCAGATCGAAGACATAGCAGATCTGACCTTCAGG-TG--TTTACA-CT
66 CCCATATTCGACGGATAGCAGATCGAAGACATAGCAGATCTGACCTT-TGGATGTTTTTACATC-
64959997 AAAGC
129 AAAGC
*
64960002 AGATCCAAGAAGATTTGACATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGACATC
1 AGATCCAAGAAGATTTGACATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATC
* * * * * * * *
64960067 TCCAT-TTC-AAGTTAGAGCAGATTGAAGACATAGTAGATCTAACCTTTGGATGTTTTTACATCG
66 CCCATATTCGACG-GATAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTTACATCA
*
64960130 AAGA
130 AAGC
* *
64960134 AGATCCAAGATGATTGGACA
1 AGATCCAAGAAGATTTGACA
64960154 GTCTTGTGTT
Statistics
Matches: 260, Mismatches: 16, Indels: 15
0.89 0.05 0.05
Matches are distributed among these distances:
129 4 0.02
130 35 0.13
131 79 0.30
132 27 0.10
133 113 0.43
134 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.26
Consensus pattern (133 bp):
AGATCCAAGAAGATTTGACATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATC
CCCATATTCGACGGATAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTTACATCAA
AGC
Found at i:64960066 original size:43 final size:43
Alignment explanation
Indices: 64959881--64960068 Score: 118
Period size: 43 Copynumber: 4.3 Consensus size: 43
64959871 AGATCCAAGA
64959881 AGATTTGACATCTCTGTATTGTCAGAGAACAAATCGAAGAAAC
1 AGATTTGACATCTCTGTATTGTCAGAGAACAAATCGAAGAAAC
* * ** * * * * *
64959924 AGATTTGGCATCCCCATATTCGACGGATAGCAGATCGAAGACATAGC
1 AGATTTGACATCTCTGTATT-GTCAGAGAACAAATCGAAGA-A-A-C
* * * * * * *
64959971 AGATCTGACCT-TCAGGTGTT-TACACTA-AAGCAGATCCAAG--A-
1 AGATTTGACATCTC-TGTATTGT-CA-GAGAA-CAAATCGAAGAAAC
64960012 AGATTTGACATCTCTGTATTGTCAGAGAACAAATCGAAGAAAC
1 AGATTTGACATCTCTGTATTGTCAGAGAACAAATCGAAGAAAC
64960055 AGATTTGACATCTC
1 AGATTTGACATCTC
64960069 CATTTCAAGT
Statistics
Matches: 103, Mismatches: 28, Indels: 28
0.65 0.18 0.18
Matches are distributed among these distances:
40 9 0.09
41 17 0.17
42 4 0.04
43 31 0.30
44 15 0.15
45 1 0.01
46 4 0.04
47 22 0.21
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.25
Consensus pattern (43 bp):
AGATTTGACATCTCTGTATTGTCAGAGAACAAATCGAAGAAAC
Found at i:64960161 original size:703 final size:702
Alignment explanation
Indices: 64959257--64961294 Score: 3206
Period size: 703 Copynumber: 2.9 Consensus size: 702
64959247 TGAGCAAATT
* *
64959257 GAAGACATCGTAGATCTGACCTTTAGGTGTTTACACTAAAGCAGATCCAAGATGATTTGGCATCT
1 GAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTAAAGCAGATCCAAGATGATTTGGCATCT
* * * *
64959322 CTGTATTGTCCGAGAACAAATCGAAGAAATAGATTTGACATCTCCATTTCAAGGTAGAGTAGATC
66 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGACATCTCCATTTCAAGTTAGAGAAGATC
* *
64959387 GAAGACATAGTAGATCTAACCTTTGGATGCTTTTACATCGAAGCAGATCCAAGATGATCTGGCAT
131 GAAGACATAGTAGATCTAACCTTTGGATGATTTTACATCGAAGAAGATCCAAGATGAT-TGGCAT
64959452 TCTTGTGTTTACAAGGAGCAAATCGTAGACATAATAGATCTGACATTCAGGTGTTTACACTGAAG
195 TCTTGTGTTTACAAGGAGCAAATCGTAGACATAATAGATCTGACATTCAGGTGTTTACACTGAAG
64959517 CGGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCAT
260 CGGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCAT
*
64959582 CCCCATATTCGACGGATAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCG
325 CCCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCG
*
64959647 AAGCAGGTCCAAGATGATTTGTCTTTCTTGTGTTTACAAGGAGCAAATCGAATACATAGCAGATC
390 AAGCAGGTCCAAGATGATTTGGCTTTCTTGTGTTTACAAGGAGCAAATCGAATACATAGCAGATC
*
64959712 TGGCCTTCAAGTGTTTACACTGAAGTAGATCCAAGATGAATTGACATCTCTGTATTGTCAGAGAA
455 TGGCCTTCAAGTGTTTACACTGAAGTAGATCCAAGATGAATTGGCATCTCTGTATTGTCAGAGAA
64959777 CAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGGATAGCAGATCGAAGACATAGCAGAT
520 CAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGGATAGCAGATCGAAGACATAGCAGAT
*
64959842 CTGACCTTTGGATGTTTTTACATCAAAGCAGATCCAAGAAGATTTGACATCT-CTGTATTGTCAG
585 CTGACCTTTGGATGTTTTTACATCAAAGCAGATCCAAGATGATTTGACAT-TACTGTATTGTCAG
64959906 AGAACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGGATAGCAGATC
649 AGAACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGGATAGCAGATC
* * *
64959960 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTAAAGCAGATCCAAGAAGATTTGACATCT
1 GAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTAAAGCAGATCCAAGATGATTTGGCATCT
* *
64960025 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGACATCTCCATTTCAAGTTAGAGCAGATT
66 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGACATCTCCATTTCAAGTTAGAGAAGATC
* *
64960090 GAAGACATAGTAGATCTAACCTTTGGATGTTTTTACATCGAAGAAGATCCAAGATGATTGGACAG
131 GAAGACATAGTAGATCTAACCTTTGGATGATTTTACATCGAAGAAGATCCAAGATGATTGG-CAT
*
64960155 TCTTGTGTTTACAAGGAGCAAATCGTAGACATAACAGATCTGACATTCAGGTGTTTACACTGAAG
195 TCTTGTGTTTACAAGGAGCAAATCGTAGACATAATAGATCTGACATTCAGGTGTTTACACTGAAG
64960220 CGGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCAT
260 CGGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCAT
*
64960285 CTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCG
325 CCCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCG
* *
64960350 AAGTAGGTCCAAGATGATTTGGCTTTCTTGTGTTTACAAGGAGCAAATCGAATACATAGTAGATC
390 AAGCAGGTCCAAGATGATTTGGCTTTCTTGTGTTTACAAGGAGCAAATCGAATACATAGCAGATC
*
64960415 TGGCCTTCAAGTGTTTACACTGAATTAGATCCAAGATGAATTGGCATCTCTGTATTGTCAGAGAA
455 TGGCCTTCAAGTGTTTACACTGAAGTAGATCCAAGATGAATTGGCATCTCTGTATTGTCAGAGAA
* *
64960480 CAAATCGAAGAAATAGATTTGGCATCCCCATATTCGACGGATAGTAGATCGAAGACATAGCAGAT
520 CAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGGATAGCAGATCGAAGACATAGCAGAT
*
64960545 CTGACCTTTGGATGTTTTTACATCAAAGCAGATCCAAGATGATTTGGCATTACTGTATTGTCAGA
585 CTGACCTTTGGATGTTTTTACATCAAAGCAGATCCAAGATGATTTGACATTACTGTATTGTCAGA
* *
64960610 GAACAAATCGAAGAAATAGATTTGGCATCCCCATATTCGACGGATAGTAGATC
650 GAACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGGATAGCAGATC
*
64960663 GAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCAT-T
1 GAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTAAAGCAGATCCAAGATGATTTGGCATCT
** * * *
64960727 ACTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGTATCTGCATATTCGA-TGGAGAGAAG
66 -CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGACATCTCCAT-TTCAAGT-TAGAGAAG
* * * * * * * *
64960791 ATCGAAAACATAGCAGATCTGACCATTGGATGATTTAACATCAAAGTAGATCCAAAATGATTTGG
128 ATCGAAGACATAGTAGATCTAACCTTTGGATGATTTTACATCGAAGAAGATCCAAGATGA-TTGG
* * * ** * * * *
64960856 CATTATTGTGTTTACAAGAAGCAAATCGAAGACATTGCT-GATCTGACCTTTAGTTGTTTACTCT
192 CATTCTTGTGTTTACAAGGAGCAAATCGTAGACA-TAATAGATCTGACATTCAGGTGTTTACACT
** * *
64960920 GAAGTAGATCCAAGATGATTTGGCATCTCTGTATTATCAGAAAACAAATCGAAGAAACAGATTTG
256 GAAGCGGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTG
* * * * *
64960985 TCATCCCCACATTCGACGGAGAGCAAATCGATGACATAGCAGATCTAACCTTTGGATGTTTTCAC
321 GCATCCCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCAC
* * * * * *
64961050 ATCGAAGCAGATTCAAGATGAATTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGACATAGCA
386 ATCGAAGCAGGTCCAAGATGATTTGGCTTTCTTGTGTTTACAAGGAGCAAATCGAATACATAGCA
* * * * * *
64961115 GATCTGACCTTCAGGTGTTTACACTGAAGCAAATCCAATATGATTTGGCATCTCTGTATTGTCAG
451 GATCTGGCCTTCAAGTGTTTACACTGAAGTAGATCCAAGATGAATTGGCATCTCTGTATTGTCAG
* ** * * *
64961180 AGAATAAATCGAAGAAACAGATTTCACATCTCCATATTC-ATGGGAGAGCAGATCGAAGACATAG
516 AGAACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGA-CGGATAGCAGATCGAAGACATAG
* * *
64961244 TAGATCTAACCTTTGGATGTTTTCACATCGAAA-CAGATCCAAGATGATTTG
580 CAGATCTGACCTTTGGATGTTTTTACATC-AAAGCAGATCCAAGATGATTTG
64961295 GAATTCTTGT
Statistics
Matches: 1232, Mismatches: 94, Indels: 17
0.92 0.07 0.01
Matches are distributed among these distances:
702 5 0.00
703 775 0.63
704 444 0.36
705 8 0.01
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (702 bp):
GAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTAAAGCAGATCCAAGATGATTTGGCATCT
CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGACATCTCCATTTCAAGTTAGAGAAGATC
GAAGACATAGTAGATCTAACCTTTGGATGATTTTACATCGAAGAAGATCCAAGATGATTGGCATT
CTTGTGTTTACAAGGAGCAAATCGTAGACATAATAGATCTGACATTCAGGTGTTTACACTGAAGC
GGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATC
CCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGA
AGCAGGTCCAAGATGATTTGGCTTTCTTGTGTTTACAAGGAGCAAATCGAATACATAGCAGATCT
GGCCTTCAAGTGTTTACACTGAAGTAGATCCAAGATGAATTGGCATCTCTGTATTGTCAGAGAAC
AAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGGATAGCAGATCGAAGACATAGCAGATC
TGACCTTTGGATGTTTTTACATCAAAGCAGATCCAAGATGATTTGACATTACTGTATTGTCAGAG
AACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGGATAGCAGATC
Found at i:64960621 original size:220 final size:220
Alignment explanation
Indices: 64959952--64960595 Score: 961
Period size: 220 Copynumber: 2.9 Consensus size: 220
64959942 TTCGACGGAT
* * *
64959952 AGCAGATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTAAAGCAGATCCAAGAAGATT
1 AGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATT
* * * *
64960017 TGACATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGACATCTCCAT-TTC-AAGTT
66 TGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACG-G
* * *
64960080 AGAGCAGATTGAAGACATAGTAGATCTAACCTTTGGATGTTTTTACATCGAAGAAGATCCAAGAT
130 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTTACATCGAAGAAGATCCAAGAT
*
64960145 GA-TTGGACAGTCTTGTGTTTACAAGG
195 GATTTGG-CATTCTTGTGTTTACAAGG
* * * *
64960171 AGCAAATCGTAGACATAACAGATCTGACATTCAGGTGTTTACACTGAAGCGGATCCAAGATGATT
1 AGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATT
64960236 TGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGA
66 TGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGA
* * *
64960301 GAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGGTCCAAGATG
131 GAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTTACATCGAAGAAGATCCAAGATG
*
64960366 ATTTGGCTTTCTTGTGTTTACAAGG
196 ATTTGGCATTCTTGTGTTTACAAGG
* * * * ** *
64960391 AGCAAATCGAATACATAGTAGATCTGGCCTTCAAGTGTTTACACTGAATTAGATCCAAGATGAAT
1 AGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATT
* *
64960456 TGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCCCCATATTCGACGGA
66 TGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGA
* * * *
64960521 TAGTAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTTACATCAAAGCAGATCCAAGATG
131 GAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTTACATCGAAGAAGATCCAAGATG
64960586 ATTTGGCATT
196 ATTTGGCATT
64960596 ACTGTATTGT
Statistics
Matches: 383, Mismatches: 39, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
219 111 0.29
220 266 0.69
221 6 0.02
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.28
Consensus pattern (220 bp):
AGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATT
TGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGA
GAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTTACATCGAAGAAGATCCAAGATG
ATTTGGCATTCTTGTGTTTACAAGG
Found at i:64960632 original size:133 final size:132
Alignment explanation
Indices: 64960441--64960887 Score: 645
Period size: 133 Copynumber: 3.4 Consensus size: 132
64960431 ACACTGAATT
*
64960441 AGATCCAAGATGAATTGGCATCT-CTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGCAT
1 AGATCCAAGATGATTTGGCAT-TACTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGCAT
64960505 CCCCATATTCGACGGATAGTAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTTACATCA
65 CCCCATATTCGACGGATAGTAGATCGAAGACATAGCAGATCTGACCTTTGGATG-TTTTACATCA
64960570 AAGC
129 AAGC
64960574 AGATCCAAGATGATTTGGCATTACTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATC
1 AGATCCAAGATGATTTGGCATTACTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATC
*
64960639 CCCATATTCGACGGATAGTAGATCGAAGACATAGCAGATCTGACCTTTAGG-TG-TTTACA-CTG
66 CCCATATTCGACGGATAGTAGATCGAAGACATAGCAGATCTGACCTTT-GGATGTTTTACATC-A
64960701 AAGC
129 AAGC
* *
64960705 AGATCCAAGATGATTTGGCATTACTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGTATC
1 AGATCCAAGATGATTTGGCATTACTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATC
** * * * * * *
64960770 TGCATATTCGATGGAGAGAAGATCGAAAACATAGCAGATCTGACCATTGGATGATTTAACATCAA
66 CCCATATTCGACGGATAGTAGATCGAAGACATAGCAGATCTGACCTTTGGATG-TTTTACATCAA
*
64960835 AGT
130 AGC
* * *
64960838 AGATCCAAAATGATTTGGCATTATTGTGTT-TACA-AGAAGCAAATCGAAGA
1 AGATCCAAGATGATTTGGCATTACTGTATTGT-CAGAGAA-CAAATCGAAGA
64960888 CATTGCTGAT
Statistics
Matches: 288, Mismatches: 17, Indels: 18
0.89 0.05 0.06
Matches are distributed among these distances:
130 3 0.01
131 116 0.40
132 6 0.02
133 160 0.56
134 3 0.01
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (132 bp):
AGATCCAAGATGATTTGGCATTACTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATC
CCCATATTCGACGGATAGTAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTACATCAAA
GC
Found at i:64960778 original size:484 final size:484
Alignment explanation
Indices: 64960176--64961079 Score: 1400
Period size: 484 Copynumber: 1.9 Consensus size: 484
64960166 CAAGGAGCAA
* *
64960176 ATCGTAGACATAACAGATCTGACATTCAGGTGTTTACACTGAAGCGGATCCAAGATGATTTGGCA
1 ATCGAAGACATAACAGATCTGACATTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
*
64960241 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGAA
* * * * * * *
64960306 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGGTCCAAGATGATTTG
131 GATCGAAAACATAGCAGATCTGACCATTGGATGATTTAACATCAAAGTAGATCCAAAATGATTTG
* * * * *
64960371 GCTTTCTTGTGTTTACAAGGAGCAAATCGAATACATAG-TAGATCTGGCCTTCAAG-TGTTTACA
196 GCATTATTGTGTTTACAAGAAGCAAATCGAAGACATAGCT-GATCTGACCTT-AAGTTGTTTACA
* * * *
64960434 CTGAATTAGATCCAAGATGAATTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAATAGATT
259 CTGAAGTAGATCCAAGATGAATTGGCATCTCTGTATTATCAGAAAACAAATCGAAGAAACAGATT
* * * * * *
64960499 TGGCATCCCCATATTCGACGGATAGTAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTT
324 TGGCATCCCCACATTCGACGGAGAGCAAATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTC
*
64960564 ACATCAAAGCAGATCCAAGATGATTTGGCATTACTGTATTGTCAGAGAACAAATCGAAGAAATAG
389 ACATCAAAGCAGATCCAAGATGAATTGGCATTACTGTATTGTCAGAGAACAAATCGAAGAAATAG
64960629 ATTTGGCATCCCCATATTCGACGGATAGTAG
454 ATTTGGCATCCCCATATTCGACGGATAGTAG
* * *
64960660 ATCGAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAACAGATCTGACATTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * *
64960725 T-TACTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGTATCTGCATATTCGATGGAGAGA
66 TCT-CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGA
64960789 AGATCGAAAACATAGCAGATCTGACCATTGGATGATTTAACATCAAAGTAGATCCAAAATGATTT
130 AGATCGAAAACATAGCAGATCTGACCATTGGATGATTTAACATCAAAGTAGATCCAAAATGATTT
* * *
64960854 GGCATTATTGTGTTTACAAGAAGCAAATCGAAGACATTGCTGATCTGACCTTTAGTTGTTTACTC
195 GGCATTATTGTGTTTACAAGAAGCAAATCGAAGACATAGCTGATCTGACCTTAAGTTGTTTACAC
*
64960919 TGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTATCAGAAAACAAATCGAAGAAACAGATTT
260 TGAAGTAGATCCAAGATGAATTGGCATCTCTGTATTATCAGAAAACAAATCGAAGAAACAGATTT
* *
64960984 GTCATCCCCACATTCGACGGAGAGCAAATCGATGACATAGCAGATCTAACCTTTGGATGTTTTCA
325 GGCATCCCCACATTCGACGGAGAGCAAATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCA
* *
64961049 CATCGAAGCAGATTCAAGATGAATTGGCATT
390 CATCAAAGCAGATCCAAGATGAATTGGCATT
64961080 CTTGTGTTTA
Statistics
Matches: 377, Mismatches: 40, Indels: 6
0.89 0.09 0.01
Matches are distributed among these distances:
483 3 0.01
484 373 0.99
485 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.28
Consensus pattern (484 bp):
ATCGAAGACATAACAGATCTGACATTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGAA
GATCGAAAACATAGCAGATCTGACCATTGGATGATTTAACATCAAAGTAGATCCAAAATGATTTG
GCATTATTGTGTTTACAAGAAGCAAATCGAAGACATAGCTGATCTGACCTTAAGTTGTTTACACT
GAAGTAGATCCAAGATGAATTGGCATCTCTGTATTATCAGAAAACAAATCGAAGAAACAGATTTG
GCATCCCCACATTCGACGGAGAGCAAATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCAC
ATCAAAGCAGATCCAAGATGAATTGGCATTACTGTATTGTCAGAGAACAAATCGAAGAAATAGAT
TTGGCATCCCCATATTCGACGGATAGTAG
Found at i:64960779 original size:264 final size:264
Alignment explanation
Indices: 64960396--64960887 Score: 729
Period size: 264 Copynumber: 1.9 Consensus size: 264
64960386 CAAGGAGCAA
* * * **
64960396 ATCGAATACATAGTAGATCTGGCCTTCAAGTGTTTACACTGAATTAGATCCAAGATGAATTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAAGTGTTTACACTGAAGCAGATCCAAGATGAATTGGCA
* * *
64960461 TCTCTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCCCCATATTCGACGGATAGTA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGGAGAGAA
* * * * *
64960526 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTTACATCAAAGCAGATCCAAGATGATTTG
131 GATCGAAAACATAGCAGATCTGACCATTGGATGATTTAACATCAAAGCAGATCCAAAATGATTTG
64960591 GCATTACTGTATTGT-CAGAGAA-CAAATCGAAGAAATAGATTTGGCATCCCCATATTCGACGGA
196 GCATTACTGTATT-TACA-AGAAGCAAATCGAAGAAATAGATTTGGCATCCCCATATTCGACGGA
64960654 TAGTAG
259 TAGTAG
* * *
64960660 ATCGAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAAGTGTTTACACTGAAGCAGATCCAAGATGAATTGGCA
* ** *
64960725 T-TACTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGTATCTGCATATTCGATGGAGAGA
66 TCT-CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGGAGAGA
*
64960789 AGATCGAAAACATAGCAGATCTGACCATTGGATGATTTAACATCAAAGTAGATCCAAAATGATTT
130 AGATCGAAAACATAGCAGATCTGACCATTGGATGATTTAACATCAAAGCAGATCCAAAATGATTT
* *
64960854 GGCATTATTGTGTTTACAAGAAGCAAATCGAAGA
195 GGCATTACTGTATTTACAAGAAGCAAATCGAAGA
64960888 CATTGCTGAT
Statistics
Matches: 202, Mismatches: 23, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
263 6 0.03
264 196 0.97
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.27
Consensus pattern (264 bp):
ATCGAAGACATAGCAGATCTGACCTTCAAGTGTTTACACTGAAGCAGATCCAAGATGAATTGGCA
TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGGAGAGAA
GATCGAAAACATAGCAGATCTGACCATTGGATGATTTAACATCAAAGCAGATCCAAAATGATTTG
GCATTACTGTATTTACAAGAAGCAAATCGAAGAAATAGATTTGGCATCCCCATATTCGACGGATA
GTAG
Found at i:64960931 original size:220 final size:220
Alignment explanation
Indices: 64960660--64961600 Score: 1262
Period size: 220 Copynumber: 4.3 Consensus size: 220
64960650 CGGATAGTAG
64960660 ATCGAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * *
64960725 T-TACTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGTATCTGCATATTCGATGGAGAGA
66 TCT-CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGA
* * * * * * *
64960789 AGATCGAAAACATAGCAGATCTGACCATTGGATGATTTAACATCAAAGTAGATCCAAAATGATTT
130 AGATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATGATTT
* * *
64960854 GGCATTATTGTGTTTACAAGAAGCAA
195 GGAATTCTTGTGTTTACAAGGAGCAA
* * * * *
64960880 ATCGAAGACATTGCTGATCTGACCTTTAGTTGTTTACTCTGAAGTAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * * *
64960945 TCTCTGTATTATCAGAAAACAAATCGAAGAAACAGATTTGTCATCCCCACATTCGACGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAG-A
* * * *
64961010 A-ATCGATGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATTCAAGATGAATT
130 AGATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATGATTT
*
64961074 GGCATTCTTGTGTTTACAAGGAGCAA
195 GGAATTCTTGTGTTTACAAGGAGCAA
* * * *
64961100 ATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAAATCCAATATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* ** * *
64961165 TCTCTGTATTGTCAGAGAATAAATCGAAGAAACAGATTTCACATCTCCATATTC-ATGGGAGAGC
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA-CGGAGAGA
*
64961229 AGATCGAAGACATAGTAGATCTAACCTTTGGATGTTTTCACATCGAAA-CAGATCCAAGATGATT
130 AGATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATC-AAAGCAGATCCAAGATGATT
*
64961293 TGGAATTCTTGTGTTCACAAGGAGCAA
194 TGGAATTCTTGTGTTTACAAGGAGCAA
* * * * * * *
64961320 ATCGAAGACATAACAGATCTAACCTTCAGGTCTTTACCCTGAAGCAAATCCAAGATGATTTGTCA
1 ATCGAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
*
64961385 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGAA
* * * * * *
64961450 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCGAAGATGATCTA
131 GATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATGATTTG
*
64961515 GAATTCTTGTGTTTACAAGGAGTAA
196 GAATTCTTGTGTTTACAAGGAGCAA
* * * *
64961540 ATTGAAGACATAGCAGATCTGACCTTT-GGATGTTTTCACATCGAAGTAGATCGAAGATGAT
1 ATCGAAGACATAGCAGATCTGACCTTTAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGAT
64961601 CTAGAATTCT
Statistics
Matches: 630, Mismatches: 81, Indels: 18
0.86 0.11 0.02
Matches are distributed among these distances:
219 6 0.01
220 601 0.95
221 7 0.01
222 16 0.03
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (220 bp):
ATCGAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGAA
GATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATGATTTG
GAATTCTTGTGTTTACAAGGAGCAA
Found at i:64961506 original size:49 final size:49
Alignment explanation
Indices: 64961449--64961596 Score: 147
Period size: 49 Copynumber: 3.2 Consensus size: 49
64961439 GACGGAGAGC
64961449 AGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGT
1 AGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGT
* * * *
64961498 AGATCGAAG--AT----GATCTAGA-ATTCTTG-TG-TTT-ACA-AGGAGT
1 AGATCGAAGACATAGCAGATCT-GACCTT-TGGATGTTTTCACATCGAAGT
* *
64961538 AAATTGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGT
1 AGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGT
64961587 AGATCGAAGA
1 AGATCGAAGA
64961597 TGATCTAGAA
Statistics
Matches: 74, Mismatches: 12, Indels: 26
0.66 0.11 0.23
Matches are distributed among these distances:
40 11 0.15
41 3 0.04
42 5 0.07
43 9 0.12
44 4 0.05
45 4 0.05
46 9 0.12
47 5 0.07
48 3 0.04
49 21 0.28
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (49 bp):
AGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGT
Found at i:64961528 original size:43 final size:43
Alignment explanation
Indices: 64961481--64961617 Score: 113
Period size: 43 Copynumber: 3.1 Consensus size: 43
64961471 GACCTTTGGA
64961481 TGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAATTCTTG
1 TGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAATTCTTG
* * * * * *
64961524 TG-TTT-ACA-AGGAGTAAATTGAAGACATAGCAGATCT-GACCTT-TGG
1 TGTTTTCACATCGAAGTAGATCGAAG--AT----GATCTAGA-ATTCTTG
64961569 ATGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAATTCTTG
1 -TGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAATTCTTG
64961613 TGTTT
1 TGTTT
64961618 ACAAGGAGTA
Statistics
Matches: 69, Mismatches: 12, Indels: 26
0.64 0.11 0.24
Matches are distributed among these distances:
40 11 0.16
41 3 0.04
42 5 0.07
43 14 0.20
44 4 0.06
45 4 0.06
46 9 0.13
47 5 0.07
48 3 0.04
49 11 0.16
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.34
Consensus pattern (43 bp):
TGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAATTCTTG
Found at i:64961614 original size:309 final size:309
Alignment explanation
Indices: 64961234--64962183 Score: 1675
Period size: 309 Copynumber: 3.1 Consensus size: 309
64961224 AGAGCAGATC
* * ** * * *
64961234 GAAGACATAGTAGATCTAACCTTTGGATGTTTTCACATCGAAACAGATCCAAGATGATTTGGAAT
1 GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAAT
* * * * * * * * *
64961299 TCTTGTGTTCACAAGGAGCAAATCGAAGACATAACAGATCTAACCTTCAGGTCTTTACCCTGAAG
66 TCTTGTGTTTACAAGGAGTAAATTGAAGACATAGCAGATCTGACCTGCAGGTGTTTACACAGAAG
* * * *
64961364 CAAATCCAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCAT
131 CATATGCAAGATGATTTGGCATCTCTCTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCAT
64961429 CTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCG
196 CTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCG
64961494 AAGTAGATCGAAGATGATCTAGAATTCTTGTGTTTACAAGGAGTAAATT
261 AAGTAGATCGAAGATGATCTAGAATTCTTGTGTTTACAAGGAGTAAATT
64961543 GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAAT
1 GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAAT
64961608 TCTTGTGTTTACAAGGAGTAAATTGAAGACATAGCAGATCTGACCTGCAGGTGTTTACACAGAAG
66 TCTTGTGTTTACAAGGAGTAAATTGAAGACATAGCAGATCTGACCTGCAGGTGTTTACACAGAAG
64961673 CATATGCAAGATGATTTGGCATCTCTCTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCAT
131 CATATGCAAGATGATTTGGCATCTCTCTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCAT
*
64961738 CTTCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCG
196 CTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCG
64961803 AAGTAGATCGAAGATGATCTAGAATTCTTGTGTTTACAAGGAGTAAATT
261 AAGTAGATCGAAGATGATCTAGAATTCTTGTGTTTACAAGGAGTAAATT
64961852 GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAAT
1 GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAAT
64961917 TCTTGTGTTTACAAGGAGTAAATTGAAGACATAGCAGATCTGACCTGCAGGTGTTTACACAGAAG
66 TCTTGTGTTTACAAGGAGTAAATTGAAGACATAGCAGATCTGACCTGCAGGTGTTTACACAGAAG
64961982 CATATGCAAGATGATTTGGCATCTCTCTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCAT
131 CATATGCAAGATGATTTGGCATCTCTCTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCAT
64962047 CTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCG
196 CTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCG
* * * *
64962112 AAGTTGATCGAAGATGATTTAGAATTCTTGTCTTTACAAGGAGCAAATT
261 AAGTAGATCGAAGATGATCTAGAATTCTTGTGTTTACAAGGAGTAAATT
64962161 GAAGACATAGCAGATCTGACCTT
1 GAAGACATAGCAGATCTGACCTT
64962184 CAGGTGTTTA
Statistics
Matches: 615, Mismatches: 26, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
309 615 1.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (309 bp):
GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAAT
TCTTGTGTTTACAAGGAGTAAATTGAAGACATAGCAGATCTGACCTGCAGGTGTTTACACAGAAG
CATATGCAAGATGATTTGGCATCTCTCTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCAT
CTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCG
AAGTAGATCGAAGATGATCTAGAATTCTTGTGTTTACAAGGAGTAAATT
Found at i:64961663 original size:89 final size:89
Alignment explanation
Indices: 64961454--64961653 Score: 400
Period size: 89 Copynumber: 2.2 Consensus size: 89
64961444 AGAGCAGATC
64961454 GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAAT
1 GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAAT
64961519 TCTTGTGTTTACAAGGAGTAAATT
66 TCTTGTGTTTACAAGGAGTAAATT
64961543 GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAAT
1 GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAAT
64961608 TCTTGTGTTTACAAGGAGTAAATT
66 TCTTGTGTTTACAAGGAGTAAATT
64961632 GAAGACATAGCAGATCTGACCT
1 GAAGACATAGCAGATCTGACCT
64961654 GCAGGTGTTT
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 111 1.00
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (89 bp):
GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAAT
TCTTGTGTTTACAAGGAGTAAATT
Found at i:64961802 original size:529 final size:526
Alignment explanation
Indices: 64961017--64962748 Score: 2117
Period size: 529 Copynumber: 3.3 Consensus size: 526
64961007 GCAAATCGAT
* * *
64961017 GACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATTC-AAGATGAATTGGCATTC
1 GACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGA-TCGAAGATGATTTAGAATTC
*
64961081 TTGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCA
65 TTGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACAGAAGCA
* *
64961146 AATCCAATATGATTTGGCATCTCTGTATTGTCAGAGAATAAATCGAAGAAACAGATTTCACATCT
130 GATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAATAAATCGAAGAAACAGATTTCACATCT
64961211 CCATATTCATGGGAGAGCAGATCGAAGACATAGTAGATCTAACCTTTGGATGTTTTCACATCGAA
195 CCATATTCA-GGGAGAGCAGATCGAAGACATAGTAGATCTAACCTTTGGATGTTTTCACATCGAA
* * *
64961276 ACAGATCCAAGATGATTTGGAATTCTTGTGTTCACAAGGAGCAAATCGAAGACATAACAGATCTA
259 GCAGATCCAAGATGATTTAGAATTCTTGTGTTCACAAGGAGCAAATCGAAGACATAACAGATCTG
*
64961341 ACCTTCAGGTCTTTACCCTGAAGCAAATCCAAGATGATTTGTCATCTCTGTATTGTCAGAGAACA
324 ACCTTCAGGTGTTTACCCTGAAGCAAATCCAAGATGATTTG-CATCTCTGTATTGTCAGAGAACA
64961406 AATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCT
388 AATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCT
* *
64961471 GACCTTTGGATGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAATTCTTGTGTTTACAAGGA
453 GACCTTTGGATGTTTTCACAT-GAAGTAAATCGAAGATGATTTAGAATTCTTGTGTTTACAAGGA
64961536 GTAAATTGAA
517 GTAAATTGAA
* * *
64961546 GACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAATTCT
1 GACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCGAAGATGATTTAGAATTCT
* * *
64961611 TGTGTTTACAAGGAGTAAATTGAAGACATAGCAGATCTGACCTGCAGGTGTTTACACAGAAGCAT
66 TGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACAGAAGCAG
* * * ** *
64961676 ATGCAAGATGATTTGGCATCTCTCTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTT
131 ATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAATAAATCGAAGAAACAGATTTCACATCTC
* * *
64961741 CATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAG
196 CATATTC-AGGGAGAGCAGATCGAAGACATAGTAGATCTAACCTTTGGATGTTTTCACATCGAAG
* * * * * * *
64961806 TAGATCGAAGATGATCTAGAATTCTTGTGTTTACAAGGAGTAAATTGAAGACATAGCAGATCTGA
260 CAGATCCAAGATGATTTAGAATTCTTGTGTTCACAAGGAGCAAATCGAAGACATAACAGATCTGA
* * * * * * * * *
64961871 CCTT-TGGATGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAAT-TCTTGTGTT-TACA-AG
325 CCTTCAGG-TGTTTAC-CCT-GAAGCAAATCCAAGATGAT-TTGCATCTC-TGTATTGT-CAGA-
** * * * * * * *
64961932 GAGTAAATTGAAGACATAGCAGATCT-G-ACCTGCAGGTGTTTAC-ACAGA-AGC--AT--ATG-
383 GAACAAATCGAAGA-A-A-CAGATTTGGCATCTCCA--T-ATT-CGACGGAGAGCAGATCGAAGA
* * * * *** * * * * * * *
64961988 CA-AG-ATGATTTGGCATCTCTCTATTGTCAGA-GAA-CAAATCGAAGAAACAGATTTGGCATCT
441 CATAGCA-GATCTGACCTTTGGATGTTTTCACATGAAGTAAATCGAAG--A-TGATTTAGAAT-T
* * ** * * * *
64962049 CCATAT-TCGAC-GGAGAGCAGATCGAA
501 -CTTGTGTTTACAAG-GAGTAAATTGAA
* **
64962075 GACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTTGATCGAAGATGATTTAGAATTCT
1 GACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCGAAGATGATTTAGAATTCT
*
64962140 TGTCTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTA-AAGCA
66 TGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACAC-AGAAGCA
64962204 GATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAATAAATCGAAGAAACAGATTTCACATCT
130 GATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAATAAATCGAAGAAACAGATTTCACATCT
*
64962269 CCATATTCAAGGGAGAGCAGATAGAAGACATAGTAGATCTAACCTTTGGATGTTTTCACATCGAA
195 CCATATTC-AGGGAGAGCAGATCGAAGACATAGTAGATCTAACCTTTGGATGTTTTCACATCGAA
* *
64962334 GCAGATCCAAGATGATTTCGCATTCTTGTGTTCACAAGGAGCAAATCGAAGACATAACAGATCTG
259 GCAGATCCAAGATGATTTAGAATTCTTGTGTTCACAAGGAGCAAATCGAAGACATAACAGATCTG
* * *
64962399 ACCTTCAGGTGTTTACACTGAAGCAAATCCAATATGATTTGGCATCTCTGTATTGTCAGAGGACA
324 ACCTTCAGGTGTTTACCCTGAAGCAAATCCAAGATGATTT-GCATCTCTGTATTGTCAGAGAACA
64962464 AATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCT
388 AATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCT
* * **
64962529 GACCTTTGGATGTTTTCACATTGAAGTACATCCAAGATGATTTAGAATTCTTGTGTTTACAATTA
453 GACCTTTGGATGTTTTCACA-TGAAGTAAATCGAAGATGATTTAGAATTCTTGTGTTTACAAGGA
64962594 GTAAATTGAA
517 GTAAATTGAA
* * * * * **
64962604 GAAATAGCAGATCTAACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGATTTGGCCTTC
1 GACATAGCAGATCTAACCTT-TGGATGTTTTCACATCGAAGCAGATCGAAGATGATTTAGAATTC
* * * * *
64962666 GTGTGTTTACAAGGAGTAAATTGAAGAAATAGCAGATCTAACCTTCAGGTGTTTACACTGAAGCA
65 TTGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACAGAAGCA
64962731 GATCCAAGATGATTTGGC
130 GATCCAAGATGATTTGGC
64962749 CTTCGTGTGT
Statistics
Matches: 994, Mismatches: 162, Indels: 96
0.79 0.13 0.08
Matches are distributed among these distances:
522 1 0.00
523 6 0.01
524 10 0.01
525 10 0.01
526 12 0.01
527 135 0.14
528 40 0.04
529 661 0.66
530 42 0.04
531 38 0.04
532 13 0.01
533 9 0.01
534 10 0.01
535 6 0.01
536 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.28
Consensus pattern (526 bp):
GACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCGAAGATGATTTAGAATTCT
TGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACAGAAGCAG
ATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAATAAATCGAAGAAACAGATTTCACATCTC
CATATTCAGGGAGAGCAGATCGAAGACATAGTAGATCTAACCTTTGGATGTTTTCACATCGAAGC
AGATCCAAGATGATTTAGAATTCTTGTGTTCACAAGGAGCAAATCGAAGACATAACAGATCTGAC
CTTCAGGTGTTTACCCTGAAGCAAATCCAAGATGATTTGCATCTCTGTATTGTCAGAGAACAAAT
CGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGAC
CTTTGGATGTTTTCACATGAAGTAAATCGAAGATGATTTAGAATTCTTGTGTTTACAAGGAGTAA
ATTGAA
Found at i:64961815 original size:49 final size:49
Alignment explanation
Indices: 64961758--64961905 Score: 147
Period size: 49 Copynumber: 3.2 Consensus size: 49
64961748 GACGGAGAGC
64961758 AGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGT
1 AGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGT
* * * *
64961807 AGATCGAAG--AT----GATCTAGA-ATTCTTG-TG-TTT-ACA-AGGAGT
1 AGATCGAAGACATAGCAGATCT-GACCTT-TGGATGTTTTCACATCGAAGT
* *
64961847 AAATTGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGT
1 AGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGT
64961896 AGATCGAAGA
1 AGATCGAAGA
64961906 TGATCTAGAA
Statistics
Matches: 74, Mismatches: 12, Indels: 26
0.66 0.11 0.23
Matches are distributed among these distances:
40 11 0.15
41 3 0.04
42 5 0.07
43 9 0.12
44 4 0.05
45 4 0.05
46 9 0.12
47 5 0.07
48 3 0.04
49 21 0.28
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (49 bp):
AGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGT
Found at i:64961837 original size:43 final size:43
Alignment explanation
Indices: 64961790--64961926 Score: 113
Period size: 43 Copynumber: 3.1 Consensus size: 43
64961780 GACCTTTGGA
64961790 TGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAATTCTTG
1 TGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAATTCTTG
* * * * * *
64961833 TG-TTT-ACA-AGGAGTAAATTGAAGACATAGCAGATCT-GACCTT-TGG
1 TGTTTTCACATCGAAGTAGATCGAAG--AT----GATCTAGA-ATTCTTG
64961878 ATGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAATTCTTG
1 -TGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAATTCTTG
64961922 TGTTT
1 TGTTT
64961927 ACAAGGAGTA
Statistics
Matches: 69, Mismatches: 12, Indels: 26
0.64 0.11 0.24
Matches are distributed among these distances:
40 11 0.16
41 3 0.04
42 5 0.07
43 14 0.20
44 4 0.06
45 4 0.06
46 9 0.13
47 5 0.07
48 3 0.04
49 11 0.16
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.34
Consensus pattern (43 bp):
TGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAATTCTTG
Found at i:64961972 original size:89 final size:89
Alignment explanation
Indices: 64961763--64961962 Score: 400
Period size: 89 Copynumber: 2.2 Consensus size: 89
64961753 AGAGCAGATC
64961763 GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAAT
1 GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAAT
64961828 TCTTGTGTTTACAAGGAGTAAATT
66 TCTTGTGTTTACAAGGAGTAAATT
64961852 GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAAT
1 GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAAT
64961917 TCTTGTGTTTACAAGGAGTAAATT
66 TCTTGTGTTTACAAGGAGTAAATT
64961941 GAAGACATAGCAGATCTGACCT
1 GAAGACATAGCAGATCTGACCT
64961963 GCAGGTGTTT
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 111 1.00
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (89 bp):
GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAAT
TCTTGTGTTTACAAGGAGTAAATT
Found at i:64962694 original size:220 final size:220
Alignment explanation
Indices: 64961852--64962661 Score: 1296
Period size: 220 Copynumber: 3.7 Consensus size: 220
64961842 GGAGTAAATT
* *
64961852 GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCGAAGATGATCTAGAAT
1 GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTAGAAT
* * *
64961917 TCTTGTGTTTACAAGGAGTAAATTGAAGACATAGCAGATCTGACCTGCAGGTGTTTACACAGAAG
66 TCTTGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAG
* * *
64961982 CATATGCAAGATGATTTGGCATCTCTCTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCAT
131 CAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCAT
64962047 CTCCATATTCGACGGAGAGCAGATC
196 CTCCATATTCGACGGAGAGCAGATC
* *
64962072 GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTTGATCGAAGATGATTTAGAAT
1 GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTAGAAT
* *
64962137 TCTTGTCTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTAAAG
66 TCTTGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAG
* **
64962202 CAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAATAAATCGAAGAAACAGATTTCACAT
131 CAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCAT
* * *
64962267 CTCCATATTCAAGGGAGAGCAGATA
196 CTCCATATTCGACGGAGAGCAGATC
* * * * *
64962292 GAAGACATAGTAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTCGCAT
1 GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTAGAAT
* * *
64962357 TCTTGTGTTCACAAGGAGCAAATCGAAGACATAACAGATCTGACCTTCAGGTGTTTACACTGAAG
66 TCTTGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAG
* * *
64962422 CAAATCCAATATGATTTGGCATCTCTGTATTGTCAGAGGACAAATCGAAGAAACAGATTTGGCAT
131 CAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCAT
64962487 CTCCATATTCGACGGAGAGCAGATC
196 CTCCATATTCGACGGAGAGCAGATC
* *
64962512 GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATTGAAGTACATCCAAGATGATTTAGAAT
1 GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTAGAAT
** * * *
64962577 TCTTGTGTTTACAATTAGTAAATTGAAGAAATAGCAGATCTAACCTTCAGGTGTTTACACTGAAG
66 TCTTGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAG
64962642 CAGATCCAAGATGATTTGGC
131 CAGATCCAAGATGATTTGGC
64962662 CTTCGTGTGT
Statistics
Matches: 536, Mismatches: 54, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
220 536 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.28
Consensus pattern (220 bp):
GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTAGAAT
TCTTGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAG
CAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCAT
CTCCATATTCGACGGAGAGCAGATC
Found at i:64962958 original size:87 final size:87
Alignment explanation
Indices: 64962512--64962922 Score: 680
Period size: 87 Copynumber: 4.7 Consensus size: 87
64962502 AGAGCAGATC
* * * * * * * **
64962512 GAAGACATAGCAGATCTGACCTT-TGGATGTTTTCACATTGAAGTACATCCAAGATGATTTAGAA
1 GAAGAAATAGCAGATCTAACCTTCAGG-TG-TTT-ACACTGAAGCAGATCCAAGATGATTTGGCC
* **
64962576 TTCTTGTGTTTACAATTAGTAAATT
63 TTCGTGTGTTTACAAGGAGTAAATT
64962601 GAAGAAATAGCAGATCTAACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCCTTC
1 GAAGAAATAGCAGATCTAACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCCTTC
64962666 GTGTGTTTACAAGGAGTAAATT
66 GTGTGTTTACAAGGAGTAAATT
64962688 GAAGAAATAGCAGATCTAACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCCTTC
1 GAAGAAATAGCAGATCTAACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCCTTC
64962753 GTGTGTTTACAAGGAGTAAATT
66 GTGTGTTTACAAGGAGTAAATT
64962775 GAAGAAATAGCAGATCTAACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCCTTC
1 GAAGAAATAGCAGATCTAACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCCTTC
64962840 GTGTGTTTACAAGGAGTAAATT
66 GTGTGTTTACAAGGAGTAAATT
64962862 GAAGAAATAGCAGATCTAACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGC
1 GAAGAAATAGCAGATCTAACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGC
64962923 ATCACTGTAT
Statistics
Matches: 309, Mismatches: 12, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
87 281 0.91
88 3 0.01
89 23 0.07
90 2 0.01
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.30
Consensus pattern (87 bp):
GAAGAAATAGCAGATCTAACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCCTTC
GTGTGTTTACAAGGAGTAAATT
Found at i:64963135 original size:394 final size:392
Alignment explanation
Indices: 64962878--64963649 Score: 1125
Period size: 394 Copynumber: 2.0 Consensus size: 392
64962868 ATAGCAGATC
*
64962878 TAACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTATCAGAGAA
1 TAACATTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTATCAGAGAA
*
64962943 CAAATCGAAGAAATAGATTTGGCATCTGCATATTCGATGGAGAGAAGATCGAAAACATAGCAGAT
66 CAAATCGAAGAAATAGATTTGGCATCTGCATATTCAATGGAGAGAAGATCGAAAACATAGCAGAT
* * *
64963008 CTGACCATTGGATGATTTAACATCAAAGGAGATCCAAAATGATTTGGCATTATTGTTTTTATAAG
131 CTGACCATTGGACGATTTAACATCAAAGGAGATCCAAAATGATTTGGCATTATTGTGTTTACAAG
* * *
64963073 AAGCAAATCGAAGACATTGCTGATATGACCTTTAGTTGTTTACTCTGAAGTAGATCCAAGATGAT
196 AAGCAAATCGAAGACATAGCAGATCTGACCTTTAGTTGTTTACTCTGAAGTAGATCCAAGATGAT
** * * *
64963138 TTGGCATCTCTGTATTGTCAGAAAACAAATCGAAGAAACAGATTTGTCATCCCCACATTTGACGG
261 TTGGCATCTCTGTATTGTCAGAAAACAAATCGAAGAAACAGAGATCTCAACCCCACATTTCACGG
* * *
64963203 AGAGCAAATCGATGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATTCAAGAT
326 AGAGC-AA-CGATGACATAGCAGATCTAACCTTCGGATGTTTTCACATAGAAGCAAATTCAAGAT
64963268 GAAT
389 GAAT
** ** *
64963272 TGGCATTCTTGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTGTCAGAGAA
1 TAACATTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTATCAGAGAA
*
64963337 CAAATCGAAGAAATAGATTTGGCATCTGCATATTCAATGGAGAGAAGATCGAAGACATAGCAGAT
66 CAAATCGAAGAAATAGATTTGGCATCTGCATATTCAATGGAGAGAAGATCGAAAACATAGCAGAT
* * * *
64963402 CTGACCATTGGACGATTTCACATCGAAGTAGATCCAAAATGATTTGGAATTATTGTGTTTACAAG
131 CTGACCATTGGACGATTTAACATCAAAGGAGATCCAAAATGATTTGGCATTATTGTGTTTACAAG
*
64963467 AAGCAAATCGAAGACATAGCAGATCTGACCATTAGTTGTTTACTCTGAAGTAGATCCAAGATGAT
196 AAGCAAATCGAAGACATAGCAGATCTGACCTTTAGTTGTTTACTCTGAAGTAGATCCAAGATGAT
* * * * * *
64963532 TTGGCATCACTGTATTGTCAGAGAACAAATCGAAGAAACAGA-TTTTCCATCCC-CATATTCGAC
261 TTGGCATCTCTGTATTGTCAGAAAACAAATCGAAGAAACAGAGATCTCAACCCCACAT-TTC-AC
* * * * * *
64963595 GGAGAGCAGATCGAAGACATAGTAGATCTGACCTTTGGTTGTTTTCACATCGAAG
324 GGAGAGCA-A-CGATGACATAGCAGATCTAACCTTCGGATGTTTTCACATAGAAG
64963650 ATTTGGCATC
Statistics
Matches: 345, Mismatches: 30, Indels: 6
0.91 0.08 0.02
Matches are distributed among these distances:
392 3 0.01
393 10 0.03
394 332 0.96
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (392 bp):
TAACATTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTATCAGAGAA
CAAATCGAAGAAATAGATTTGGCATCTGCATATTCAATGGAGAGAAGATCGAAAACATAGCAGAT
CTGACCATTGGACGATTTAACATCAAAGGAGATCCAAAATGATTTGGCATTATTGTGTTTACAAG
AAGCAAATCGAAGACATAGCAGATCTGACCTTTAGTTGTTTACTCTGAAGTAGATCCAAGATGAT
TTGGCATCTCTGTATTGTCAGAAAACAAATCGAAGAAACAGAGATCTCAACCCCACATTTCACGG
AGAGCAACGATGACATAGCAGATCTAACCTTCGGATGTTTTCACATAGAAGCAAATTCAAGATGA
AT
Found at i:64963223 original size:220 final size:220
Alignment explanation
Indices: 64962813--64963290 Score: 598
Period size: 220 Copynumber: 2.2 Consensus size: 220
64962803 GTTTACACTG
* * * * * *
64962813 AAGCAGATCCAAGATGATTTGGCCTTCGTGTGTTTACAAGGAGTAAATTGAAGAAATAGCAGATC
1 AAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGAAGCAAATCGAAGAAATAGCAGATA
*
64962878 TAACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTATCAGAGAA
66 TAACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTATCAGAAAA
* ** * *
64962943 CAAATCGAAGAAATAGATTTGGCATCTGCATATTCGATGGAGAGAAGATCGAAAACATAGCAGAT
131 CAAATCGAAGAAACAGATTTGGCATCCCCACATTCGACGGAGAGAAGATCGAAAACATAGCAGAT
*
64963008 CTGACCATTGGATGATTTAACATCA
196 CTAACCATTGGATGATTTAACATCA
* * * * * * * *
64963033 AAGGAGATCCAAAATGATTTGGCATTATTGTTTTTATAAGAAGCAAATCGAAGACATTGCTGATA
1 AAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGAAGCAAATCGAAGAAATAGCAGATA
* * * * * * *
64963098 TGACCTTTAGTTGTTTACTCTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAAAA
66 TAACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTATCAGAAAA
* * **
64963163 CAAATCGAAGAAACAGATTTGTCATCCCCACATTTGACGGAGAGCAA-ATCGATGACATAGCAGA
131 CAAATCGAAGAAACAGATTTGGCATCCCCACATTCGACGGAGAG-AAGATCGAAAACATAGCAGA
* * * *
64963227 TCTAACCTTTGGATGTTTTCACATCG
195 TCTAACCATTGGATGATTTAACATCA
* *
64963253 AAGCAGATTCAAGATGAATTGGCATTCTTGTGTTTACA
1 AAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACA
64963291 CTGAAGCAGA
Statistics
Matches: 214, Mismatches: 43, Indels: 2
0.83 0.17 0.01
Matches are distributed among these distances:
220 212 0.99
221 2 0.01
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (220 bp):
AAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGAAGCAAATCGAAGAAATAGCAGATA
TAACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTATCAGAAAA
CAAATCGAAGAAACAGATTTGGCATCCCCACATTCGACGGAGAGAAGATCGAAAACATAGCAGAT
CTAACCATTGGATGATTTAACATCA
Found at i:64963319 original size:174 final size:174
Alignment explanation
Indices: 64963109--64963464 Score: 489
Period size: 174 Copynumber: 2.0 Consensus size: 174
64963099 GACCTTTAGT
* * *
64963109 TGTTTACTCTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAAAACAAATCGAAGA
1 TGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTGTCAGAAAACAAATCGAAGA
* ** * *
64963174 AACAGATTTGTCATCCCCACATTTGACGGAGAGCAA-ATCGATGACATAGCAGATCTAACCTTTG
66 AACAGATTTGGCATCCCCACATTCAACGGAGAG-AAGATCGAAGACATAGCAGATCTAACCATTG
* * * * * *
64963238 GATGTTTTCACATCGAAGCAGATTCAAGATGAATTGGCATTCTTG
130 GACGATTTCACATCGAAGCAGATCCAAAATGAATTGGAATTATTG
*
64963283 TGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTGTCAGAGAACAAATCGAAGA
1 TGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTGTCAGAAAACAAATCGAAGA
* ** * * *
64963348 AATAGATTTGGCATCTGCATATTCAATGGAGAGAAGATCGAAGACATAGCAGATCTGACCATTGG
66 AACAGATTTGGCATCCCCACATTCAACGGAGAGAAGATCGAAGACATAGCAGATCTAACCATTGG
* *
64963413 ACGATTTCACATCGAAGTAGATCCAAAATGATTTGGAATTATTG
131 ACGATTTCACATCGAAGCAGATCCAAAATGAATTGGAATTATTG
64963457 TGTTTACA
1 TGTTTACA
64963465 AGAAGCAAAT
Statistics
Matches: 158, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
173 2 0.01
174 156 0.99
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.29
Consensus pattern (174 bp):
TGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTGTCAGAAAACAAATCGAAGA
AACAGATTTGGCATCCCCACATTCAACGGAGAGAAGATCGAAGACATAGCAGATCTAACCATTGG
ACGATTTCACATCGAAGCAGATCCAAAATGAATTGGAATTATTG
Found at i:64963465 original size:701 final size:692
Alignment explanation
Indices: 64962064--64964051 Score: 2025
Period size: 701 Copynumber: 2.8 Consensus size: 692
64962054 TTCGACGGAG
* * * * *
64962064 AGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTTGATCGAAGATGA
1 AGCAAATCGAAGACATAGCAGATCTGACCTTAGG-TGTTTACAC-T-GAAGTAGATCCAAGATGA
** * * * *
64962129 TTTAGAATTCTTGTCTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTA
63 TTT-GGCTTCCTGTATTTACAAGGAGCAAATTGAAGAAATAGCAGATCTAACCTTCAGGTGTTTA
* * *
64962194 CACTAAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAATAAATCGAAGAAACAGA
127 CACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTGTCAGAGAACAAATCGAAGAAA-AGA
** * * * * * * *
64962259 TTTCACATCTCCATATTCAAGGGAGAGCAGATAGAAGACATAGTAGATCTAACCTTTGGATGTTT
191 TTTGGCATCTCCATATTCGACGGAGAGAAGATCGAAAACATAGCAGATCTGACCTTTGGATG-TT
* * *
64962324 TCACATCGAAGCAGATCCAAGATGATTTCGCATTCTTGTGTTCACAAGGAGCAAATCGAAGACAT
255 TCACATCGAAGCAGATCCAAAATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACAT
* * * * *
64962389 AACAGATCTGACCTTCAGGTGTTTACACTGAAGCAAATCCAATATGATTTGGCATCTCTGTATTG
320 AGCAGATCTGACCTTTAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTG
* *
64962454 TCAGAGGACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACA
385 TCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTTGACGGAGAGCAGATCGAAGACA
* * * * *
64962519 TAGCAGATCTGACCTTTGGATGTTTTCACATTGAAGTACATCCAAGATGATTTAGAATTCTTGTG
450 TAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTG
* * ** * * * *
64962584 TTTACAATTAGTAAATTGAAGAAATAGCAGATCTAACCTTCAGGTGTTTACACTGAAGCAGATCC
515 TTTACAATAAGCAAATCCAAG-AAT---AGATCTAACCATCAGCTGTTTACACAGAAGCAAATCC
* ** * *
64962649 AAGATGATTTGGCCTTCGTGTGTTTACAAGGAGTAAATTGAAGAAATAGCAGATCTAACCTTCAG
576 AAGATGATTTGGCCATCGTGCATTTACAAGGAGGAAATCGAAGAAATAGCAGATCTAACCTT-AG
* * ** * *
64962714 GTGTTTACACTGAAGCAGATCCAAGATGATTTGGCCTTCGTGTGTTTACAAGG
640 GCGTTTACACTGAAGCAGATCCAAAATGATTTGGAATTAGTGTGTTTACAAGA
* * * * *
64962767 AGTAAATTGAAGAAATAGCAGATCTAACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATT
1 AGCAAATCGAAGACATAGCAGATCTGACCTT-AGGTGTTTACACTGAAGTAGATCCAAGATGATT
* * *
64962832 TGGCCTTCGTGTGTTTACAAGGAGTAAATTGAAGAAATAGCAGATCTAACCTTCAGGTGTTTACA
65 TGG-CTTCCTGTATTTACAAGGAGCAAATTGAAGAAATAGCAGATCTAACCTTCAGGTGTTTACA
*
64962897 CTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTATCAGAGAACAAATCGAAGAAATAGATT
129 CTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTGTCAGAGAACAAATCGAAGAAA-AGATT
* * * *
64962962 TGGCATCTGCATATTCGATGGAGAGAAGATCGAAAACATAGCAGATCTGACCATTGGATGATTTA
193 TGGCATCTCCATATTCGACGGAGAGAAGATCGAAAACATAGCAGATCTGACCTTTGGATG-TTTC
* * * * * * *
64963027 ACATCAAAGGAGATCCAAAATGATTTGGCATTATTGTTTTTATAAGAAGCAAATCGAAGACATTG
257 ACATCGAAGCAGATCCAAAATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAG
* * * *
64963092 CTGATATGACCTTTAGTTGTTTACTCTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTC
322 CAGATCTGACCTTTAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTC
* * * * * *
64963157 AGAAAACAAATCGAAGAAACAGATTTGTCATCCCCACATTTGACGGAGAGCAAATCGATGACATA
387 AGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTTGACGGAGAGCAGATCGAAGACATA
* * *
64963222 GCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATTCAAGATGAATTGGCATTCTTGTGTT
452 GCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTT
* * *** * * *
64963287 TACACTGAAGCAGATCCAAG-AT-GAT-TTGGCATCA-CTGTATTGTCAGAGAA-CAAATCGAAG
517 TACAAT-AAGCAAATCCAAGAATAGATCTAACCATCAGCTGT-TT-ACACAGAAGCAAATCCAAG
* *
64963347 AAATAGATTTGG-CATC-TGCATATT-CAATGGAGAGAAGATCGAAGACATAGCAGATCTGACCA
579 --AT-GATTTGGCCATCGTGCAT-TTACAA-GGAG-GAA-ATCGAAGAAATAGCAGATCTAACC-
* *
64963409 TT-GGACGATTT-CACATCGAAGTAGATCCAAAATGATTTGGAATTATTGTGTTTACAAGA
636 TTAGG-CG-TTTACAC-T-GAAGCAGATCCAAAATGATTTGGAATTAGTGTGTTTACAAGA
* *
64963468 AGCAAATCGAAGACATAGCAGATCTGACCATTAGTTGTTTACTCTGAAGTAGATCCAAGATGATT
1 AGCAAATCGAAGACATAGCAGATCTGACC-TTAGGTGTTTACACTGAAGTAGATCCAAGATGATT
* * * ** * *** *
64963533 TGGCATCACTGTATTGT-C-AGAGAACAAATCGAAG-AA-A-CAGAT-TTTCCATCCCCAT-ATT
65 TGGCTTC-CTGTATT-TACAAG-GAGCAAATTGAAGAAATAGCAGATCTAACC-TTCAGGTGTTT
* * * * * * * **** *
64963591 -CGACGGAGAGCAGATCGAAGA-CATAGTAG-ATCTGACCT-T-TGGT-TGTTTTCACATC---G
126 AC-ACTGA-AGCAGATCCAAGATGAT-TTGGCATC--A-CTGTATTGTCAGAGAACAAATCGAAG
*
64963647 --AAGATTTGGCATCTCCATATTCGACGGAGAGAAGATCGAACACATAGCAGATCTGACCTTTGG
185 AAAAGATTTGGCATCTCCATATTCGACGGAGAGAAGATCGAAAACATAGCAGATCTGACCTTTGG
* *
64963710 ATGTTATCACTTCGAAGCAGATCCAAAATGATTTGGCATTCTTGTGTATACAAGGAGCAAATCGA
250 ATGTT-TCACATCGAAGCAGATCCAAAATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGA
* *
64963775 AGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGTAGAGCCAAGATGATTTGGCATATCT
314 AGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCT
* ** * * *
64963840 GTATTGTCAGAGAGCGGATTGAAGAAACAAATTTGGCATCTCCATATTTGAAGGAGAGCAGATCG
379 GTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTTGACGGAGAGCAGATCG
64963905 AAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATT
444 AAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATT
** ** * * * * * * *
64963970 GGTGTGTTTACAAGCAGAAAATCGAAGACATAGTAGATTTGACCTTCAGGTGTTTACACTGAAGC
509 CTTGTGTTTACAATAAGCAAATCCAAG--A-A-TAGATCTAACCATCAGCTGTTTACACAGAAGC
*
64964035 AGATCCAAGATGATTTG
570 AAATCCAAGATGATTTG
64964052 ATGTCTCTAT
Statistics
Matches: 1060, Mismatches: 187, Indels: 85
0.80 0.14 0.06
Matches are distributed among these distances:
690 11 0.01
691 294 0.28
692 1 0.00
694 11 0.01
695 18 0.02
696 23 0.02
697 46 0.04
698 38 0.04
699 28 0.03
700 18 0.02
701 524 0.49
702 12 0.01
703 34 0.03
704 2 0.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (692 bp):
AGCAAATCGAAGACATAGCAGATCTGACCTTAGGTGTTTACACTGAAGTAGATCCAAGATGATTT
GGCTTCCTGTATTTACAAGGAGCAAATTGAAGAAATAGCAGATCTAACCTTCAGGTGTTTACACT
GAAGCAGATCCAAGATGATTTGGCATCACTGTATTGTCAGAGAACAAATCGAAGAAAAGATTTGG
CATCTCCATATTCGACGGAGAGAAGATCGAAAACATAGCAGATCTGACCTTTGGATGTTTCACAT
CGAAGCAGATCCAAAATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
TCTGACCTTTAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
AACAAATCGAAGAAACAGATTTGGCATCTCCATATTTGACGGAGAGCAGATCGAAGACATAGCAG
ATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACA
ATAAGCAAATCCAAGAATAGATCTAACCATCAGCTGTTTACACAGAAGCAAATCCAAGATGATTT
GGCCATCGTGCATTTACAAGGAGGAAATCGAAGAAATAGCAGATCTAACCTTAGGCGTTTACACT
GAAGCAGATCCAAAATGATTTGGAATTAGTGTGTTTACAAGA
Found at i:64963561 original size:87 final size:89
Alignment explanation
Indices: 64963384--64963567 Score: 234
Period size: 87 Copynumber: 2.1 Consensus size: 89
64963374 TGGAGAGAAG
*
64963384 ATCGAAGACATAGCAGATCTGACCATTGGACGATTTCACATCGAAGTAGATCCAAAATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCATTAGACGATTTCACATCGAAGTAGATCCAAAATGATTTGG
* * *
64963449 AATTATTGTGTTTACAAGAAGCAA
66 AATCACTGTATTTACAAGAAGCAA
** *
64963473 ATCGAAGACATAGCAGATCTGACCATTAGTTG-TTT-AC-TCTGAAGTAGATCCAAGATGATTTG
1 ATCGAAGACATAGCAGATCTGACCATTAGACGATTTCACATC-GAAGTAGATCCAAAATGATTTG
*
64963535 GCATCACTGTATTGT-CAGAGAA-CAA
65 GAATCACTGTATT-TACA-AGAAGCAA
64963560 ATCGAAGA
1 ATCGAAGA
64963568 AACAGATTTT
Statistics
Matches: 84, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
86 2 0.02
87 45 0.54
88 8 0.10
89 29 0.35
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTGACCATTAGACGATTTCACATCGAAGTAGATCCAAAATGATTTGG
AATCACTGTATTTACAAGAAGCAA
Found at i:64963693 original size:77 final size:77
Alignment explanation
Indices: 64963579--64963726 Score: 233
Period size: 77 Copynumber: 1.9 Consensus size: 77
64963569 ACAGATTTTC
* * * * *
64963579 CATCCCCATATTCGACGGAGAGCAGATCGAAGACATAGTAGATCTGACCTTTGGTTGTTTTCACA
1 CATCCCCATATTCGACGGAGAGAAGATCGAACACATAGCAGATCTGACCTTTGGATGTTATCACA
64963644 TCGAAGATTTGG
66 TCGAAGATTTGG
* *
64963656 CATCTCCATATTCGACGGAGAGAAGATCGAACACATAGCAGATCTGACCTTTGGATGTTATCACT
1 CATCCCCATATTCGACGGAGAGAAGATCGAACACATAGCAGATCTGACCTTTGGATGTTATCACA
64963721 TCGAAG
66 TCGAAG
64963727 CAGATCCAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
77 64 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (77 bp):
CATCCCCATATTCGACGGAGAGAAGATCGAACACATAGCAGATCTGACCTTTGGATGTTATCACA
TCGAAGATTTGG
Found at i:64963915 original size:220 final size:219
Alignment explanation
Indices: 64963650--64964188 Score: 772
Period size: 220 Copynumber: 2.4 Consensus size: 219
64963640 CACATCGAAG
* *
64963650 ATTTGGCATCTCCATATTCGACGGAGAGAAGATCGAACACATAGCAGATCTGACCTTTGGATGTT
1 ATTTGGCATCTCCATATTCGAAGGAGAGAAGATCGAAGACATAGCAGATCTGACCTTTGGATGTT
* * * *
64963715 ATCACTTCGAAGCAGATCCAAAATGATTTGGCATTCTTGTGTATACAAGGAGCAAATCGAAGACA
66 -TCACATCGAAGCAGATCCAAAATGATTTGGCATTCGTGTGTATACAAGCAGAAAATCGAAGACA
* * * *
64963780 TAGCAGATCTGACCTTTAGGTGTTTACACTGAAGTAGAGCCAAGATGATTTGGCATATCTGTATT
130 TAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGAGCCAAGATGATTTGACATATCTATATT
* ** *
64963845 GTCAGAGAGCGGATTGAAGAAACAA
195 GTCAGAGAACAAATCGAAGAAACAA
* *
64963870 ATTTGGCATCTCCATATTTGAAGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTT
1 ATTTGGCATCTCCATATTCGAAGGAGAGAAGATCGAAGACATAGCAGATCTGACCTTTGGATG-T
* * *
64963935 TTCACATCGAAGCAGATCCAAGATGATTTGGCATTGGTGTGTTTACAAGCAGAAAATCGAAGACA
65 TTCACATCGAAGCAGATCCAAAATGATTTGGCATTCGTGTGTATACAAGCAGAAAATCGAAGACA
* * * ** *
64964000 TAGTAGATTTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGATGTCTCTATATT
130 TAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGAGCCAAGATGATTTGACATATCTATATT
*
64964065 GTCAGAGAACAAATCGAAGAAACAG
195 GTCAGAGAACAAATCGAAGAAACAA
* * * *
64964090 ATTTGGCATCTGCATATTCGATGGAGAGAAGATCGAAGACATAGCAGATCTGACCATTGGACGAT
1 ATTTGGCATCTCCATATTCGAAGGAGAGAAGATCGAAGACATAGCAGATCTGACCTTTGGATG-T
*
64964155 TTCACATCAAAGCAGATCCAAAATGATTTGGCAT
65 TTCACATCGAAGCAGATCCAAAATGATTTGGCAT
64964189 NNNNNNNNNN
Statistics
Matches: 283, Mismatches: 35, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
220 281 0.99
221 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (219 bp):
ATTTGGCATCTCCATATTCGAAGGAGAGAAGATCGAAGACATAGCAGATCTGACCTTTGGATGTT
TCACATCGAAGCAGATCCAAAATGATTTGGCATTCGTGTGTATACAAGCAGAAAATCGAAGACAT
AGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGAGCCAAGATGATTTGACATATCTATATTG
TCAGAGAACAAATCGAAGAAACAA
Found at i:64964858 original size:45 final size:44
Alignment explanation
Indices: 64964794--64964882 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 44
64964784 ATGAGTCTAG
*
64964794 TTTCAGGAAAAATTTACGGAACTGGATTCTGAGTTTCTGAACTCA
1 TTTCAGGAAAAATTTACGGAACTGGATTCCGAG-TTCTGAACTCA
*
64964839 TTTCAGGGAAAATTTACGGAACTGGATTCCGAGTTCTGAACTCA
1 TTTCAGGAAAAATTTACGGAACTGGATTCCGAGTTCTGAACTCA
64964883 AGATATGATT
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
44 11 0.26
45 31 0.74
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.31
Consensus pattern (44 bp):
TTTCAGGAAAAATTTACGGAACTGGATTCCGAGTTCTGAACTCA
Found at i:64965541 original size:55 final size:55
Alignment explanation
Indices: 64965457--64965566 Score: 202
Period size: 55 Copynumber: 2.0 Consensus size: 55
64965447 ATCAAATCGT
*
64965457 TCAAATACTAATATAGGACATTCGAACAGAGATCGAACTAGATCTTATTCGAACA
1 TCAAATACTAATAGAGGACATTCGAACAGAGATCGAACTAGATCTTATTCGAACA
*
64965512 TCAAATACTAATCGAGGACATTCGAACAGAGATCGAACTAGATCTTATTCGAACA
1 TCAAATACTAATAGAGGACATTCGAACAGAGATCGAACTAGATCTTATTCGAACA
64965567 CCAGAGCTCT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.25
Consensus pattern (55 bp):
TCAAATACTAATAGAGGACATTCGAACAGAGATCGAACTAGATCTTATTCGAACA
Found at i:64965566 original size:27 final size:27
Alignment explanation
Indices: 64965476--64965566 Score: 89
Period size: 27 Copynumber: 3.3 Consensus size: 27
64965466 AATATAGGAC
64965476 ATTCGAACAGAGATCGAACTAGATCTT
1 ATTCGAACAGAGATCGAACTAGATCTT
* * * *
64965503 ATTCGAACATCAAATACTAATCGAGGA-C--
1 ATTCGAACA-GAGAT-CGAA-CTA-GATCTT
64965531 ATTCGAACAGAGATCGAACTAGATCTT
1 ATTCGAACAGAGATCGAACTAGATCTT
64965558 ATTCGAACA
1 ATTCGAACA
64965567 CCAGAGCTCT
Statistics
Matches: 49, Mismatches: 8, Indels: 14
0.69 0.11 0.20
Matches are distributed among these distances:
24 2 0.04
25 3 0.06
26 3 0.06
27 21 0.43
28 12 0.24
29 3 0.06
30 3 0.06
31 2 0.04
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (27 bp):
ATTCGAACAGAGATCGAACTAGATCTT
Found at i:64970713 original size:99 final size:99
Alignment explanation
Indices: 64970532--64970927 Score: 675
Period size: 99 Copynumber: 4.0 Consensus size: 99
64970522 TCGATCTGAA
* * *
64970532 ATTTCGTGTAAGACCCTATCTGGGATAGAGGCATCAATATTGAATTACATGTAAGACCACGTTTG
1 ATTTCGTGTAAGACCCTGTCTGGGATAGAGGCATCAATATTGAATTACATGTAAGACCACGTCTA
* *
64970597 GGACGTTGGCATCGTACTTGTTTATGAGTATCAG
66 GGACGTTGGCATTGTACTTGTTTATGAGTATCTG
* * * * * *
64970631 ATTTTGTGTAAGAACCTGTCTGGGACAGAGGCATCAATATTGAATTACATGTAAGATCACATCTG
1 ATTTCGTGTAAGACCCTGTCTGGGATAGAGGCATCAATATTGAATTACATGTAAGACCACGTCTA
64970696 GGACGTTGGCATTGTACTTGTTTATGAGTATCTG
66 GGACGTTGGCATTGTACTTGTTTATGAGTATCTG
*
64970730 ATTTCGTGTAAGACCCTGTCTGGGATAGAGGCATCGATATTGAATTACATGTAAGACCACGTCTA
1 ATTTCGTGTAAGACCCTGTCTGGGATAGAGGCATCAATATTGAATTACATGTAAGACCACGTCTA
64970795 GGACGTTGGCATTGTACTTGTTTATGAGTATCTG
66 GGACGTTGGCATTGTACTTGTTTATGAGTATCTG
*
64970829 ATTTCGTGTAAGACCCTGTCTGGGATAGAGGCATCGATATTGAATTACATGTAAGACCACGTCTA
1 ATTTCGTGTAAGACCCTGTCTGGGATAGAGGCATCAATATTGAATTACATGTAAGACCACGTCTA
64970894 GGACGTTGGCATTGTACTTGTTTATGAGTATCTG
66 GGACGTTGGCATTGTACTTGTTTATGAGTATCTG
64970928 TATCGCTTCG
Statistics
Matches: 281, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
99 281 1.00
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (99 bp):
ATTTCGTGTAAGACCCTGTCTGGGATAGAGGCATCAATATTGAATTACATGTAAGACCACGTCTA
GGACGTTGGCATTGTACTTGTTTATGAGTATCTG
Found at i:64972273 original size:206 final size:206
Alignment explanation
Indices: 64971919--64972331 Score: 817
Period size: 206 Copynumber: 2.0 Consensus size: 206
64971909 CTCTGAAAAT
64971919 TTTGAATAAGTTCGGTTTAGTTCCGAGCTTTCCTTAAATGTATGTTTTAAGTCTTGTAGACTATA
1 TTTGAATAAGTTCGGTTTAGTTCCGAGCTTTCCTTAAATGTATGTTTTAAGTCTTGTAGACTATA
64971984 TTTGGAGATGATTGCTTATAAAATGATGTTAAATAATATCTGTGATTCTGAATTAGTCTAAAATG
66 TTTGGAGATGATTGCTTATAAAATGATGTTAAATAATATCTGTGATTCTGAATTAGTCTAAAATG
*
64972049 TTCTGTCGGTTTGGTAATGCCTGTAACCCTAATTCAATGTTGGTTACAGGATTAGGGGTATTACA
131 TTCTGTCGGGTTGGTAATGCCTGTAACCCTAATTCAATGTTGGTTACAGGATTAGGGGTATTACA
64972114 TTTTATTGGTA
196 TTTTATTGGTA
64972125 TTTGAATAAGTTCGGTTTAGTTCCGAGCTTTCCTTAAATGTATGTTTTAAGTCTTGTAGACTATA
1 TTTGAATAAGTTCGGTTTAGTTCCGAGCTTTCCTTAAATGTATGTTTTAAGTCTTGTAGACTATA
64972190 TTTGGAGATGATTGCTTATAAAATGATGTTAAATAATATCTGTGATTCTGAATTAGTCTAAAATG
66 TTTGGAGATGATTGCTTATAAAATGATGTTAAATAATATCTGTGATTCTGAATTAGTCTAAAATG
64972255 TTCTGTCGGGTTGGTAATGCCTGTAACCCTAATTCAATGTTGGTTACAGGATTAGGGGTATTACA
131 TTCTGTCGGGTTGGTAATGCCTGTAACCCTAATTCAATGTTGGTTACAGGATTAGGGGTATTACA
64972320 TTTTATTGGTA
196 TTTTATTGGTA
64972331 T
1 T
64972332 ACTTAAGTGT
Statistics
Matches: 206, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
206 206 1.00
ACGTcount: A:0.27, C:0.11, G:0.21, T:0.42
Consensus pattern (206 bp):
TTTGAATAAGTTCGGTTTAGTTCCGAGCTTTCCTTAAATGTATGTTTTAAGTCTTGTAGACTATA
TTTGGAGATGATTGCTTATAAAATGATGTTAAATAATATCTGTGATTCTGAATTAGTCTAAAATG
TTCTGTCGGGTTGGTAATGCCTGTAACCCTAATTCAATGTTGGTTACAGGATTAGGGGTATTACA
TTTTATTGGTA
Found at i:64972472 original size:72 final size:72
Alignment explanation
Indices: 64972355--64972498 Score: 279
Period size: 72 Copynumber: 2.0 Consensus size: 72
64972345 GGATAACACA
64972355 TCAATGACCCTGATAGTATTCTCGAGCCAAAATTCAACTTTCTCTACATCGTCATCTAAGTAGCC
1 TCAATGACCCTGATAGTATTCTCGAGCCAAAATTCAACTTTCTCTACATCGTCATCTAAGTAGCC
64972420 TGAAACT
66 TGAAACT
*
64972427 TCAATGACCCTGATAGTATTCTCGAGCCAAAATTCAACTTTCTCTACATCGTCATCTCAGTAGCC
1 TCAATGACCCTGATAGTATTCTCGAGCCAAAATTCAACTTTCTCTACATCGTCATCTAAGTAGCC
64972492 TGAAACT
66 TGAAACT
64972499 CTTCAGCCCC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.31
Consensus pattern (72 bp):
TCAATGACCCTGATAGTATTCTCGAGCCAAAATTCAACTTTCTCTACATCGTCATCTAAGTAGCC
TGAAACT
Found at i:64974264 original size:53 final size:55
Alignment explanation
Indices: 64974200--64974339 Score: 167
Period size: 53 Copynumber: 2.6 Consensus size: 55
64974190 TTTTAAAATT
* * *
64974200 ACCATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G-AACTC
1 ACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATAGTAACTC
* * * ** *
64974253 ACCATTGCCATGCCTTAACATGGTCTTACATGGGATCTTTGCCTTATAGTAGTTT
1 ACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATAGTAACTC
* *
64974308 ATCAATGCCATGTCTTGACATGGTCTTACATG
1 ACCATTGCCATGTCTTGACATGGTCTTACATG
64974340 CTTTACTTTC
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
53 41 0.57
54 1 0.01
55 30 0.42
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (55 bp):
ACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATAGTAACTC
Found at i:64979014 original size:21 final size:22
Alignment explanation
Indices: 64978975--64979015 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
64978965 GTTGAAATGT
64978975 CACATGGGCATGTTGCCCCTCC
1 CACATGGGCATGTTGCCCCTCC
*
64978997 CACATGGGCGTG-TGCCCCT
1 CACATGGGCATGTTGCCCCT
64979016 ATGTTAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.12, C:0.39, G:0.27, T:0.22
Consensus pattern (22 bp):
CACATGGGCATGTTGCCCCTCC
Found at i:64991584 original size:43 final size:43
Alignment explanation
Indices: 64991497--64991595 Score: 123
Period size: 43 Copynumber: 2.3 Consensus size: 43
64991487 CTGATATGTG
* *
64991497 TTATCGTGTAAGACCACGTTTGGACGTTGGCATTGACTTATGAT
1 TTAT-GTGTAAGACCACATTTGGACGTTGGCATCGACTTATGAT
64991541 TTATGTGTAAGACCACATTTGGGACGTTGGCATCGTAC-T-TGAT
1 TTATGTGTAAGACCACATTT-GGACGTTGGCATCG-ACTTATGAT
*
64991584 TT-CGTGTAAGAC
1 TTATGTGTAAGAC
64991596 TTTGTCTGGT
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
42 9 0.18
43 21 0.42
44 18 0.36
45 2 0.04
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.35
Consensus pattern (43 bp):
TTATGTGTAAGACCACATTTGGACGTTGGCATCGACTTATGAT
Found at i:64991768 original size:38 final size:38
Alignment explanation
Indices: 64991717--64991789 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 38
64991707 TTCATCGTGC
* ** *
64991717 ATTCTGAGAAATGAATCATAATAGGAAATGTGTATTCG
1 ATTCTAAGAAATGAAAAATAATAGGAAATATGTATTCG
*
64991755 ATTCTAAGAAATGAAAAATAATATGAAATATGTAT
1 ATTCTAAGAAATGAAAAATAATAGGAAATATGTAT
64991790 CTATATGATC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 30 1.00
ACGTcount: A:0.47, C:0.05, G:0.16, T:0.32
Consensus pattern (38 bp):
ATTCTAAGAAATGAAAAATAATAGGAAATATGTATTCG
Found at i:64993643 original size:48 final size:48
Alignment explanation
Indices: 64993580--64993805 Score: 272
Period size: 48 Copynumber: 4.7 Consensus size: 48
64993570 CACATATCGG
* * *
64993580 TGCCGATGCCATGTTCCAAAAATGGTCTTACTCTACCTCTCATATAAA
1 TGCCGATGCCATGTTCCAAACATGGTCTTACACTAACTCTCATATAAA
*
64993628 TGCCGATGCAATGTTCCAAACATGGTCTTACACTAACTCTCATATAAA
1 TGCCGATGCCATGTTCCAAACATGGTCTTACACTAACTCTCATATAAA
* * * * ** * **
64993676 TGTCGATGCCATGTTTCAAACAGGGTCATACACTGGCTCACATATCGA
1 TGCCGATGCCATGTTCCAAACATGGTCTTACACTAACTCTCATATAAA
* * * *
64993724 GGCCGATGCCATGTTCCAGACATGGACTTACTCTAACTCTCATATAAA
1 TGCCGATGCCATGTTCCAAACATGGTCTTACACTAACTCTCATATAAA
* * *
64993772 TGTCGATGCCATGTTCCGAACGTGGTCTTACACT
1 TGCCGATGCCATGTTCCAAACATGGTCTTACACT
64993806 GGCTCACATA
Statistics
Matches: 144, Mismatches: 34, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
48 144 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (48 bp):
TGCCGATGCCATGTTCCAAACATGGTCTTACACTAACTCTCATATAAA
Found at i:65002270 original size:64 final size:64
Alignment explanation
Indices: 65002189--65002360 Score: 195
Period size: 67 Copynumber: 2.7 Consensus size: 64
65002179 AGACATTATG
* *
65002189 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
65002253 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
65002318 AA
63 AA
* * *
65002320 AT-TTGCTAGGTCACATGGGTGATACTGA-GTGTTCACCATGT
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGT
65002361 GTATAAGAGA
Statistics
Matches: 87, Mismatches: 17, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
63 9 0.10
64 25 0.29
66 20 0.23
67 33 0.38
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:65010727 original size:14 final size:14
Alignment explanation
Indices: 65010708--65010734 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
65010698 TATTGAAGAA
65010708 ATAATTAAGAACAC
1 ATAATTAAGAACAC
65010722 ATAATTAAGAACA
1 ATAATTAAGAACA
65010735 AATCAAGTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.22
Consensus pattern (14 bp):
ATAATTAAGAACAC
Found at i:65012459 original size:142 final size:141
Alignment explanation
Indices: 65012232--65012502 Score: 359
Period size: 142 Copynumber: 1.9 Consensus size: 141
65012222 AGGGTACAAT
* * * *
65012232 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCACATCTAAGTCGATGCCATGTCCCA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATCTAAGGCGATGACATGTCCCA
* * *
65012297 GACAGGTCTTACACTGGCTCTCA-CTTATCTGTGTCAATGCTATGTCCCAGATAGGTATTACACT
66 GACAGGTCTTACACTGGCTCTCATC-TATCGGTGTCAATGCCATGTCCCAAATAGGTATTACACT
65012361 AACACACCTCAA
130 AACACACCTCAA
* * * *
65012373 GCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCT-TGCATATCTTGAGGCTGATGACGTGTC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCT-CACATC-TAAGGC-GATGACATGTC
* * *
65012436 CCAGACAGGTCTTACATTGGCTCTCATCTATCGGTGTCGATGCCATGTCCCAAATAGGTCTTACA
63 CCAGACAGGTCTTACACTGGCTCTCATCTATCGGTGTCAATGCCATGTCCCAAATAGGTATTACA
65012501 CT
128 CT
65012503 CGCACACACA
Statistics
Matches: 112, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
139 1 0.01
140 18 0.16
141 24 0.21
142 68 0.61
143 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (141 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATCTAAGGCGATGACATGTCCCA
GACAGGTCTTACACTGGCTCTCATCTATCGGTGTCAATGCCATGTCCCAAATAGGTATTACACTA
ACACACCTCAA
Found at i:65012485 original size:49 final size:48
Alignment explanation
Indices: 65012234--65012502 Score: 219
Period size: 49 Copynumber: 5.6 Consensus size: 48
65012224 GGTACAATGC
* * *
65012234 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAC-ATCTAAGT
1 CGATGCCATGTCCCAGACA-GGTCTTACACTGGCTCTCACTATCTGAGT
*
65012282 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCACTTATCTGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCAC-TATCTGAGT
* * * * ** * * * *
65012331 CAATGCTATGTCCCAGATAGGTATTACACT--AACACAC-CTC-AAGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCACTATCTGAGT
* * *
65012375 CGATGCCATGTCCCAGACATGTCTTACACTAGCT-TGCA-TATCTTGAGG
1 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTCT-CACTATC-TGAGT
* * * * *
65012423 CTGATGACGTGTCCCAGACAGGTCTTACATTGGCTCTCATCTATCGGTGT
1 C-GATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCA-CTATCTGAGT
* *
65012473 CGATGCCATGTCCCAAATAGGTCTTACACT
1 CGATGCCATGTCCCAGACAGGTCTTACACT
65012503 CGCACACACA
Statistics
Matches: 170, Mismatches: 39, Indels: 23
0.73 0.17 0.10
Matches are distributed among these distances:
44 26 0.15
45 2 0.01
46 4 0.02
47 24 0.14
48 20 0.12
49 86 0.51
50 4 0.02
51 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCACTATCTGAGT
Done.