Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 191 of 235
Found at i:65024241 original size:29 final size:29
Alignment explanation
Indices: 65024174--65024298 Score: 180
Period size: 29 Copynumber: 4.3 Consensus size: 29
65024164 AAGTCTACAT
* *
65024174 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
65024202 TCATTCATATGGCCTATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
65024231 ACATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
65024260 ACATTCATATGGCCGATTAGGCCCAAGTC
1 ACATTCATATGGCCCATTAGGCCCAAATC
65024289 ACATTCATAT
1 ACATTCATAT
65024299 ACATACTTTC
Statistics
Matches: 86, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 20 0.23
29 66 0.77
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:65031886 original size:17 final size:18
Alignment explanation
Indices: 65031864--65031897 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
65031854 CACATTGAAG
65031864 TGTTTT-AATGAAAACCT
1 TGTTTTCAATGAAAACCT
*
65031881 TGTTTTCATTGAAAACC
1 TGTTTTCAATGAAAACC
65031898 CTTCTTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCAATGAAAACCT
Found at i:65033046 original size:28 final size:29
Alignment explanation
Indices: 65033012--65033102 Score: 123
Period size: 29 Copynumber: 3.2 Consensus size: 29
65033002 TACATACATG
*
65033012 CATATGGCCCACTAGGCCC-AATCTCATT
1 CATATGGCCCATTAGGCCCAAATCTCATT
*
65033040 CGTATGGCCCATTAGGCCCAAATCAT-ATT
1 CATATGGCCCATTAGGCCCAAATC-TCATT
* *
65033069 CATATGGCCGATTAGGCCCAAATCGCATT
1 CATATGGCCCATTAGGCCCAAATCTCATT
65033098 CATAT
1 CATAT
65033103 ACATGCTTTC
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
28 17 0.31
29 37 0.67
30 1 0.02
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.26
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATCTCATT
Found at i:65042659 original size:29 final size:28
Alignment explanation
Indices: 65042623--65042700 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
65042613 TCATGAGATT
65042623 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
65042653 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
65042680 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
65042701 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:65042918 original size:174 final size:174
Alignment explanation
Indices: 65042653--65042980 Score: 620
Period size: 174 Copynumber: 1.9 Consensus size: 174
65042643 AAATTGTACA
65042653 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
65042718 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
65042783 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
65042827 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
65042892 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
65042957 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
65042981 ACCTTGAGTT
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 150 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:65045415 original size:28 final size:27
Alignment explanation
Indices: 65045375--65045429 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 27
65045365 AGCTAGGAGG
*
65045375 GATTCGAACCCCAAACCCCCTTTCCCT
1 GATTCAAACCCCAAACCCCCTTTCCCT
65045402 NGATTCAAACCCCAAACCCCCTTTCCCT
1 -GATTCAAACCCCAAACCCCCTTTCCCT
65045430 ACATGTGACG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.24, C:0.47, G:0.05, T:0.22
Consensus pattern (27 bp):
GATTCAAACCCCAAACCCCCTTTCCCT
Found at i:65047401 original size:29 final size:28
Alignment explanation
Indices: 65047335--65047401 Score: 64
Period size: 29 Copynumber: 2.3 Consensus size: 28
65047325 TTTATTTGTT
* *
65047335 TTAAATTATATAATTAGTGATATATAAA
1 TTAAATTATATAATAAGTAATATATAAA
* *
65047363 TATAATTTATATAATAAG-AATTTATGATAA
1 T-TAAATTATATAATAAGTAATATAT-A-AA
65047393 TTAAATTAT
1 TTAAATTAT
65047402 GATGATATTA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
28 6 0.19
29 22 0.71
30 3 0.10
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (28 bp):
TTAAATTATATAATAAGTAATATATAAA
Found at i:65049064 original size:30 final size:29
Alignment explanation
Indices: 65049025--65049085 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
65049015 GTAGCTGAAG
*
65049025 CTAGTTAAATCGTACACTTAGTGCCAAAA
1 CTAGTTAAATCGCACACTTAGTGCCAAAA
65049054 CTAGTTTAAATCGCACACTTAGTGCCAAAA
1 CTAG-TTAAATCGCACACTTAGTGCCAAAA
65049084 CT
1 CT
65049086 TCCGTTTCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 4 0.13
30 26 0.87
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.28
Consensus pattern (29 bp):
CTAGTTAAATCGCACACTTAGTGCCAAAA
Found at i:65053424 original size:18 final size:18
Alignment explanation
Indices: 65053401--65053435 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
65053391 TAAAAGAGTC
65053401 AATTAGG-ATTAAATTGAA
1 AATTAGGCA-TAAATTGAA
65053419 AATTAGGCATAAATTGA
1 AATTAGGCATAAATTGA
65053436 GTAGAGATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.94
19 1 0.06
ACGTcount: A:0.49, C:0.03, G:0.17, T:0.31
Consensus pattern (18 bp):
AATTAGGCATAAATTGAA
Found at i:65053990 original size:24 final size:22
Alignment explanation
Indices: 65053963--65054009 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 22
65053953 AGGATTTATA
65053963 ATATTCCGAGTGTGTTTGGGCTGG
1 ATATT-CGAGTGTGTTTGGG-TGG
*
65053987 ATATTCTAGTGTGTTTGGGTGG
1 ATATTCGAGTGTGTTTGGGTGG
65054009 A
1 A
65054010 ATCCACGTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 4 0.18
23 13 0.59
24 5 0.23
ACGTcount: A:0.15, C:0.09, G:0.36, T:0.40
Consensus pattern (22 bp):
ATATTCGAGTGTGTTTGGGTGG
Found at i:65055834 original size:29 final size:29
Alignment explanation
Indices: 65055798--65055890 Score: 150
Period size: 29 Copynumber: 3.2 Consensus size: 29
65055788 CCAATCTTAA
*
65055798 TCATATGGCCCATTAGGCCCAAATCACAT
1 TCATATGGCACATTAGGCCCAAATCACAT
* * *
65055827 TCGTATGGCTCATTAGGCCCGAATCACAT
1 TCATATGGCACATTAGGCCCAAATCACAT
65055856 TCATATGGCACATTAGGCCCAAATCACAT
1 TCATATGGCACATTAGGCCCAAATCACAT
65055885 TCATAT
1 TCATAT
65055891 ACAGGCTTTC
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 58 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (29 bp):
TCATATGGCACATTAGGCCCAAATCACAT
Found at i:65058916 original size:17 final size:18
Alignment explanation
Indices: 65058894--65058929 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
65058884 ATAGAAAAAA
*
65058894 AAGGATTAAA-TTGAATT
1 AAGGATAAAAGTTGAATT
65058911 AAGGATAAAAGTTGAATT
1 AAGGATAAAAGTTGAATT
65058929 A
1 A
65058930 TAGAACAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31
Consensus pattern (18 bp):
AAGGATAAAAGTTGAATT
Found at i:65059584 original size:14 final size:14
Alignment explanation
Indices: 65059545--65059577 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
65059535 AATATAAAAC
*
65059545 AAATAAATTAAATT
1 AAATAAATTAAAGT
65059559 AAATAAATTAAAGT
1 AAATAAATTAAAGT
65059573 AAATA
1 AAATA
65059578 GAATAAAACG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (14 bp):
AAATAAATTAAAGT
Found at i:65062494 original size:29 final size:29
Alignment explanation
Indices: 65062427--65062551 Score: 182
Period size: 29 Copynumber: 4.3 Consensus size: 29
65062417 AAGTCTACAT
* * * *
65062427 ACATGCATATGGCCGACTCGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
65062455 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
65062484 ACATT-AGTATGGCCCATTAGGCCCAAATC
1 ACATTCA-TATGGCCCATTAGGCCCAAATC
65062513 ACATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
65062542 ACATTCATAT
1 ACATTCATAT
65062552 ACATGCTTTC
Statistics
Matches: 88, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
28 20 0.23
29 67 0.76
30 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:65062632 original size:17 final size:18
Alignment explanation
Indices: 65062610--65062643 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
65062600 GCCTCTTATA
65062610 GGCCCA-ATAGCCCATCG
1 GGCCCACATAGCCCATCG
*
65062627 GGCCCACTTAGCCCATC
1 GGCCCACATAGCCCATC
65062644 CTGGCCCAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.21, C:0.44, G:0.21, T:0.15
Consensus pattern (18 bp):
GGCCCACATAGCCCATCG
Found at i:65062795 original size:16 final size:16
Alignment explanation
Indices: 65062770--65062804 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
65062760 AACTTTTGAC
65062770 TTTTGACTTTTCGGCA
1 TTTTGACTTTTCGGCA
*
65062786 TTTTGGCTTTTCGGCA
1 TTTTGACTTTTCGGCA
65062802 TTT
1 TTT
65062805 CAAATTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.09, C:0.17, G:0.20, T:0.54
Consensus pattern (16 bp):
TTTTGACTTTTCGGCA
Found at i:65064745 original size:11 final size:11
Alignment explanation
Indices: 65064731--65064839 Score: 76
Period size: 11 Copynumber: 9.8 Consensus size: 11
65064721 AAGTAGCAGT
*
65064731 AAAATAGCACC
1 AAAACAGCACC
*
65064742 AAAACAGCATC
1 AAAACAGCACC
*
65064753 AAAACAACACC
1 AAAACAGCACC
* *
65064764 AAAA-TGCCATC
1 AAAACAG-CACC
*
65064775 AAAACAGCACA
1 AAAACAGCACC
* * *
65064786 AAAATACCATC
1 AAAACAGCACC
65064797 AAAACAGCACC
1 AAAACAGCACC
* * *
65064808 CAAACAACAAC
1 AAAACAGCACC
*
65064819 AAAACAGCACAA
1 AAAACAGCAC-C
65064831 AAAACAGCA
1 AAAACAGCA
65064840 TCACCAACAA
Statistics
Matches: 71, Mismatches: 24, Indels: 5
0.71 0.24 0.05
Matches are distributed among these distances:
11 61 0.86
12 10 0.14
ACGTcount: A:0.59, C:0.29, G:0.06, T:0.06
Consensus pattern (11 bp):
AAAACAGCACC
Found at i:65064756 original size:22 final size:22
Alignment explanation
Indices: 65064731--65064857 Score: 112
Period size: 22 Copynumber: 5.7 Consensus size: 22
65064721 AAGTAGCAGT
*
65064731 AAAATAGCACCAAAACAGCATC
1 AAAACAGCACCAAAACAGCATC
* *
65064753 AAAACAACACCAAAA-TGCCATC
1 AAAACAGCACCAAAACAG-CATC
* * *
65064775 AAAACAGCACAAAAATACCATC
1 AAAACAGCACCAAAACAGCATC
* * *
65064797 AAAACAGCACCCAAACAACAAC
1 AAAACAGCACCAAAACAGCATC
*
65064819 AAAACAGCACAAAAAACAGCATC
1 AAAACAGCAC-CAAAACAGCATC
* *
65064842 ACCAACAACACCAAAA
1 A-AAACAGCACCAAAA
65064858 ACCTGCAAAA
Statistics
Matches: 82, Mismatches: 19, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
21 1 0.01
22 61 0.74
23 13 0.16
24 7 0.09
ACGTcount: A:0.58, C:0.31, G:0.06, T:0.06
Consensus pattern (22 bp):
AAAACAGCACCAAAACAGCATC
Found at i:65069603 original size:45 final size:44
Alignment explanation
Indices: 65069536--65069770 Score: 145
Period size: 45 Copynumber: 5.3 Consensus size: 44
65069526 ATCTTGTTTC
* **
65069536 CCTGAAGTTGCAGTGAAACAGATCGAAGACGGTGAATCTAAGCTT
1 CCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCCAATCT-AGCTT
** ** * *
65069581 CCTGAAGTTGCAGTGAAGCAGATTTAAG-CCACCAACCTAGCTC
1 CCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCCAATCTAGCTT
* * * * * * **** * *
65069624 CCTAAAGTTGTAGTGGAGTAG-GCTAA-AATTTCAGATCTTGTTT
1 CCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCCA-ATCTAGCTT
*
65069667 CCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTGAGCTT
1 -CCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCCAATCT-AGCTT
** ** *
65069713 CCTGAAGTTGCAGTGAAGCAGATTTAAG-CCACCAACCTAGCTT
1 CCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCCAATCTAGCTT
* *
65069756 CCTAAAGTTGTAGTG
1 CCTGAAGTTGCAGTG
65069771 GAGTAGGCTA
Statistics
Matches: 140, Mismatches: 44, Indels: 14
0.71 0.22 0.07
Matches are distributed among these distances:
42 5 0.04
43 44 0.31
44 28 0.20
45 58 0.41
46 5 0.04
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (44 bp):
CCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCCAATCTAGCTT
Found at i:65069748 original size:132 final size:130
Alignment explanation
Indices: 65069511--65070036 Score: 640
Period size: 132 Copynumber: 4.0 Consensus size: 130
65069501 TGGGCCTATG
* *
65069511 AGGCTAAAATTTCAGATCTTGTTTCCCTGAAGTTGCAGTGAAACAGATCGAAGACGGTGAATCTA
1 AGGCTAAAATTTCAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTG
65069576 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCA-ACCTAGCTCCCTAAAGTTGTAGTGG
66 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAG-CA--AGACCTAGCTCCCTAAAGTTGTAGTGG
65069640 AGT
128 AGT
*
65069643 AGGCTAAAATTTCAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTG
1 AGGCTAAAATTTCAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTG
*
65069708 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCA-ACCTAGCTTCCTAAAGTTGTAGTGG
66 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAG-CA--AGACCTAGCTCCCTAAAGTTGTAGTGG
65069772 AGT
128 AGT
* **
65069775 AGGCTAAAATTTCAGATCTTGTTTCCCTG-A-TTACAGTGGGGCAGATCGAAGAC-G-GAATCT-
1 AGGCTAAAATTTCAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTG
* * * * * *
65069835 AGGCTTCCTGATGTTGCAGTAAAGCAGATTTAAGCAAGTCTTGGCTCTCTAAAGTTGTAGTGGAG
66 A-GCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCAAGACCTAGCTCCCTAAAGTTGTAGTGGAG
65069900 T
130 T
** * * * * * * *
65069901 AGGCTGAGGATTGT-AGATCTCGTCTCCCTGAAGTTGCAGTG-AGAAAAATCAAAGACGATAAAT
1 AGGCT-AAAATT-TCAGATCTTGTTTCCCTGAAGTTGCAGTGAAG-CAGATCGAAGACGGTGAAT
* * *
65069964 CTTG-GCTTCCTGAAGATGCAGCGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGTTGTAGTG
63 C-TGAGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCAAGACCTAGCTCCCTAAAGTTGTAGTG
*
65070028 AAGT
127 GAGT
*
65070032 GGGCT
1 AGGCT
65070037 GAAGTTTGTA
Statistics
Matches: 349, Mismatches: 34, Indels: 23
0.86 0.08 0.06
Matches are distributed among these distances:
125 1 0.00
126 28 0.08
127 21 0.06
128 39 0.11
129 17 0.05
130 20 0.06
131 65 0.19
132 158 0.45
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (130 bp):
AGGCTAAAATTTCAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTG
AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCAAGACCTAGCTCCCTAAAGTTGTAGTGGAGT
Found at i:65070294 original size:44 final size:44
Alignment explanation
Indices: 65070232--65070591 Score: 571
Period size: 44 Copynumber: 8.2 Consensus size: 44
65070222 AAGAACAGAT
*
65070232 AGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATAGAA-AGTAGC
1 AGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGA-TAGC
65070276 AGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGC
1 AGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGC
** *
65070320 AGATTTAACGTCTCTGTGTTGGCGGAGAGCAGATCGAAGATAGC
1 AGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGC
65070364 AGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGC
1 AGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGC
* * * *
65070408 ATATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCAAAGATAAC
1 AGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGC
* * * *
65070452 AGATTTGGCATATCTGTAGTGGCAGAGAGCAGATCGAAGATAGC
1 AGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGC
*
65070496 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAA-AGTAGC
1 AGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGA-TAGC
65070540 AGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGC
1 AGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGC
65070584 AGATTTGG
1 AGATTTGG
65070592 TGTTCCTGAG
Statistics
Matches: 292, Mismatches: 21, Indels: 6
0.92 0.07 0.02
Matches are distributed among these distances:
43 1 0.00
44 289 0.99
45 2 0.01
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.25
Consensus pattern (44 bp):
AGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGC
Found at i:65071674 original size:55 final size:54
Alignment explanation
Indices: 65071584--65071688 Score: 156
Period size: 54 Copynumber: 1.9 Consensus size: 54
65071574 AACTGACCCT
**
65071584 AACAGAGCAAATTAAGGGTTCTTCTTTTTTTAAAAAAAAAAAGAAAAAGGGGGAG
1 AACAGAGCAAATTAAGGGTTCTTC-TTTTAAAAAAAAAAAAAGAAAAAGGGGGAG
* * *
65071639 AACAGAGCAGATTAAGTGTTCTTCTTTTAAAAAAAAAAAAGGAAAAAGGG
1 AACAGAGCAAATTAAGGGTTCTTCTTTTAAAAAAAAAAAAAGAAAAAGGG
65071689 AGCTTAAAGG
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
54 23 0.51
55 22 0.49
ACGTcount: A:0.49, C:0.08, G:0.21, T:0.23
Consensus pattern (54 bp):
AACAGAGCAAATTAAGGGTTCTTCTTTTAAAAAAAAAAAAAGAAAAAGGGGGAG
Found at i:65073640 original size:136 final size:131
Alignment explanation
Indices: 65073352--65073841 Score: 464
Period size: 136 Copynumber: 3.7 Consensus size: 131
65073342 AGATTTGATA
* * * * * * **
65073352 TTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTACAATTTCTCGTTTGCCCAAAATAAT
1 TTTGGCAATTCG-GGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGTTCAAAATAAT
* * * * * * * * * *
65073417 CAAATATCCCTTCGAAATTTCACTCAGGTCTTCTAAAAATCCTTTAAAACAAAGGCAATATTCGG
65 CGAACATCCCTTAGGAATTTCACTCACGTATTCAAAAAACCCTTTAAAACAAAGGCAATGTTCGA
65073482 TG
130 TG
* * * *
65073484 TTTGACAATTCGGGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTCTTCAAAATAATC
1 TTTGGCAATTCGGGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGTTCAAAATAATC
* * * *
65073549 GAACATTCCTTTAGG-TTTTCACTCATGTTTTTTTTCAAGAAAACCCTTTAAAACAAAGGCAATG
66 GAACA-TCCCTTAGGAATTTCACTCACG----TATTCAA-AAAACCCTTTAAAACAAAGGCAATG
65073613 TTCGATG
125 TTCGATG
* * * **
65073620 TTTGGCAATTCGAGAATCATGCCCTATCGTGCTGGGTTGCGCTTTTTCATTTGTTCAAAACGATC
1 TTTGGCAATTCGGGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGTTCAAAATAATC
* * * * **
65073685 GAAGATCCCTTCGGAATTTCACTCACGTATTCTAAAAACTCTTTAAAACAGAA-AAAATGTTCGA
66 GAACATCCCTTAGGAATTTCACTCACGTATTCAAAAAACCCTTTAAAACA-AAGGCAATGTTCGA
65073749 TG
130 TG
* * * *
65073751 TTCGGCAATTCGGGGAAT-AGTGCCCTATCGTGCTGGGTTGCAATCTCCCATTTGTTCAAAATAA
1 TTTGGCAATTC-GGGAATCA-TGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGTTCAAAATAA
* * *
65073815 TCGAATATCTCTTTCGGAATTTCACTC
64 TCGAACATC-CCTTAGGAATTTCACTC
65073842 GTATTTTCTA
Statistics
Matches: 295, Mismatches: 52, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
131 94 0.32
132 74 0.25
133 16 0.05
135 12 0.04
136 99 0.34
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (131 bp):
TTTGGCAATTCGGGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGTTCAAAATAATC
GAACATCCCTTAGGAATTTCACTCACGTATTCAAAAAACCCTTTAAAACAAAGGCAATGTTCGAT
G
Found at i:65073845 original size:131 final size:130
Alignment explanation
Indices: 65073352--65073846 Score: 487
Period size: 131 Copynumber: 3.7 Consensus size: 130
65073342 AGATTTGATA
* * * * * **
65073352 TTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTACAATTTCTCGTTTGCCCAAAATAAT
1 TTTGGCAATTCG-GGAATCATGCCCTATCGTGCTGGGTTGCAATTTCTCATTTGTTCAAAATAAT
* * * *
65073417 CAAATATCCCTTCGAAATTTCACTCAGGTCTTCTAAAAA-TCCTTTAAAACAAAGGCAATATTCG
65 CGAATATCCCTTCGGAATTTCACTCA-GTATTCTAAAAACT-CTTTAAAACAAAGGCAATGTTCG
*
65073481 GTG
128 ATG
* ** * *
65073484 TTTGACAATTCGGGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTCTTCAAAATAATC
1 TTTGGCAATTCGGGAATCATGCCCTATCGTGCTGGGTTGCAATTTCTCATTTGTTCAAAATAATC
* * * * * * *
65073549 GAACATTCCTTTAGG-TTTTCACTCATGTTTTTTTTCAAGAAAACCCTTTAAAACAAAGGCAATG
66 GAATA-TCCCTTCGGAATTTCACTCA-G----TATTCTA-AAAACTCTTTAAAACAAAGGCAATG
65073613 TTCGATG
124 TTCGATG
* ** * **
65073620 TTTGGCAATTCGAGAATCATGCCCTATCGTGCTGGGTTGCGCTTTTTCATTTGTTCAAAACGATC
1 TTTGGCAATTCGGGAATCATGCCCTATCGTGCTGGGTTGCAATTTCTCATTTGTTCAAAATAATC
* **
65073685 GAAGATCCCTTCGGAATTTCACTCACGTATTCTAAAAACTCTTTAAAACAGAA-AAAATGTTCGA
66 GAATATCCCTTCGGAATTTCACTCA-GTATTCTAAAAACTCTTTAAAACA-AAGGCAATGTTCGA
65073749 TG
129 TG
* * *
65073751 TTCGGCAATTCGGGGAAT-AGTGCCCTATCGTGCTGGGTTGCAATCTCCCATTTGTTCAAAATAA
1 TTTGGCAATTC-GGGAATCA-TGCCCTATCGTGCTGGGTTGCAATTTCTCATTTGTTCAAAATAA
*
65073815 TCGAATATCTCTTTCGGAATTTCACTC-GTATT
64 TCGAATATC-CCTTCGGAATTTCACTCAGTATT
65073847 TTCTAGGGTG
Statistics
Matches: 299, Mismatches: 52, Indels: 25
0.80 0.14 0.07
Matches are distributed among these distances:
131 99 0.33
132 74 0.25
133 16 0.05
135 12 0.04
136 98 0.33
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (130 bp):
TTTGGCAATTCGGGAATCATGCCCTATCGTGCTGGGTTGCAATTTCTCATTTGTTCAAAATAATC
GAATATCCCTTCGGAATTTCACTCAGTATTCTAAAAACTCTTTAAAACAAAGGCAATGTTCGATG
Found at i:65076104 original size:16 final size:16
Alignment explanation
Indices: 65076083--65076114 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
65076073 TTAAAGATAT
*
65076083 ATACATGTATAATAAA
1 ATACATGAATAATAAA
65076099 ATACATGAATAATAAA
1 ATACATGAATAATAAA
65076115 TAAAAAATAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.28
Consensus pattern (16 bp):
ATACATGAATAATAAA
Found at i:65076138 original size:35 final size:34
Alignment explanation
Indices: 65076098--65076163 Score: 91
Period size: 33 Copynumber: 1.9 Consensus size: 34
65076088 TGTATAATAA
65076098 AATACATGAATAATAAATAA-AA-AATACATATACGT
1 AATACAT--ATAATAAA-AATAATAATACATATACGT
65076133 AATACATATAATAAAAATAATAATACATATA
1 AATACATATAATAAAAATAATAATACATATA
65076164 ATACACATAG
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
32 2 0.07
33 10 0.34
34 10 0.34
35 7 0.24
ACGTcount: A:0.62, C:0.08, G:0.03, T:0.27
Consensus pattern (34 bp):
AATACATATAATAAAAATAATAATACATATACGT
Found at i:65077458 original size:21 final size:22
Alignment explanation
Indices: 65077426--65077475 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 22
65077416 TATATATAAC
65077426 ATAATAT-T-AAAA-CACATAT
1 ATAATATATAAAAATCACATAT
*
65077445 ATAATATATAAAAAATTACATAT
1 ATAATATAT-AAAAATCACATAT
65077468 ATAATATA
1 ATAATATA
65077476 ATACATAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 7 0.27
20 1 0.04
22 4 0.15
23 14 0.54
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (22 bp):
ATAATATATAAAAATCACATAT
Found at i:65077562 original size:15 final size:16
Alignment explanation
Indices: 65077541--65077579 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
65077531 ATAATAAATC
65077541 AATAAATATGATAAGT
1 AATAAATATGATAAGT
* *
65077557 -ATAAATATTATAATT
1 AATAAATATGATAAGT
65077572 AATAAATA
1 AATAAATA
65077580 ACAGAAAGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (16 bp):
AATAAATATGATAAGT
Found at i:65078081 original size:16 final size:16
Alignment explanation
Indices: 65078060--65078097 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
65078050 AAAAAAACAA
*
65078060 AGAGGGGAGAAAGGAG
1 AGAGGGGAGAAAGAAG
65078076 AGAGGGGAGAAAGAAG
1 AGAGGGGAGAAAGAAG
65078092 AGAGGG
1 AGAGGG
65078098 ATTTCCGGCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (16 bp):
AGAGGGGAGAAAGAAG
Found at i:65078566 original size:18 final size:18
Alignment explanation
Indices: 65078514--65078614 Score: 66
Period size: 18 Copynumber: 5.7 Consensus size: 18
65078504 TAAGCCCCCC
* **
65078514 AAAAAAACCTAACCCCAA
1 AAAAAAAACTAACCAAAA
* *
65078532 AAAAAAAA-GAA-GAAAA
1 AAAAAAAACTAACCAAAA
*
65078548 AAGAAAAACCTAACCAAAA
1 AA-AAAAAACTAACCAAAA
65078567 AAAAAAAACTAA--AAAA
1 AAAAAAAACTAACCAAAA
** *
65078583 CCCTAAAAACCTAACCAAAA
1 --AAAAAAAACTAACCAAAA
65078603 AAAAAAAACTAA
1 AAAAAAAACTAA
65078615 GAAACCCTAG
Statistics
Matches: 61, Mismatches: 15, Indels: 14
0.68 0.17 0.16
Matches are distributed among these distances:
16 8 0.13
17 7 0.11
18 36 0.59
19 6 0.10
20 4 0.07
ACGTcount: A:0.72, C:0.19, G:0.03, T:0.06
Consensus pattern (18 bp):
AAAAAAAACTAACCAAAA
Found at i:65078631 original size:36 final size:36
Alignment explanation
Indices: 65078551--65078623 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
65078541 AAGAAAAAAG
65078551 AAAAACCTAACCAAAAAAAAAAAACTAAAAAACCCT
1 AAAAACCTAACCAAAAAAAAAAAACTAAAAAACCCT
*
65078587 AAAAACCTAACCAAAAAAAAAAAACTAAGAAACCCT
1 AAAAACCTAACCAAAAAAAAAAAACTAAAAAACCCT
65078623 A
1 A
65078624 GCCACCTAGC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.68, C:0.22, G:0.01, T:0.08
Consensus pattern (36 bp):
AAAAACCTAACCAAAAAAAAAAAACTAAAAAACCCT
Found at i:65081148 original size:12 final size:12
Alignment explanation
Indices: 65081128--65081163 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
65081118 AGTCATTTGA
65081128 CATTCATGCATT
1 CATTCATGCATT
*
65081140 CATTTATGCATT
1 CATTCATGCATT
*
65081152 CATTCATTCATT
1 CATTCATGCATT
65081164 GCATATTCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:65087492 original size:44 final size:44
Alignment explanation
Indices: 65087418--65087657 Score: 187
Period size: 50 Copynumber: 5.2 Consensus size: 44
65087408 TATCGTGGAA
* * *
65087418 AATCTTATCTCCCTGAAGTTTCAATAGAGCAGATTAAAGCCACT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACT
* * *
65087462 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTTAAA-TCATTGTGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAAAGCCA-----CT
* * **
65087511 GAATCTTATCTCCCTGAAGTTGCGGTGGAGCAGATTAAAATTATCGCGGT
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT--AA--AGC-CACT
* ** *
65087561 GAATCTTATCTCCCTGAAGTTGCGGTGGAATAGATTAAAGCCACA
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACT
* * * *
65087606 AATC-TATCTCACTGAAGTTGTAGTGGAGCAGATTGAAGCCACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACT
65087649 AATCTTATC
1 AATCTTATC
65087658 AAATCTTATC
Statistics
Matches: 159, Mismatches: 23, Indels: 28
0.76 0.11 0.13
Matches are distributed among these distances:
43 37 0.23
44 39 0.25
45 6 0.04
46 2 0.01
48 2 0.01
49 3 0.02
50 66 0.42
51 2 0.01
53 1 0.01
55 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACT
Found at i:65087596 original size:50 final size:50
Alignment explanation
Indices: 65087462--65087599 Score: 195
Period size: 50 Copynumber: 2.8 Consensus size: 50
65087452 TAAAGCCACT
* * * * *
65087462 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTTAAATCATTGTGATG
1 AATCTTATCTCCCTGAAGTTGCGGTGGAGCAGATTAAAATCATCGCGATG
* *
65087512 AATCTTATCTCCCTGAAGTTGCGGTGGAGCAGATTAAAATTATCGCGGTG
1 AATCTTATCTCCCTGAAGTTGCGGTGGAGCAGATTAAAATCATCGCGATG
**
65087562 AATCTTATCTCCCTGAAGTTGCGGTGGAATAGATTAAA
1 AATCTTATCTCCCTGAAGTTGCGGTGGAGCAGATTAAA
65087600 GCCACAAATC
Statistics
Matches: 79, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 79 1.00
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (50 bp):
AATCTTATCTCCCTGAAGTTGCGGTGGAGCAGATTAAAATCATCGCGATG
Found at i:65087632 original size:43 final size:43
Alignment explanation
Indices: 65087562--65087653 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 43
65087552 TATCGCGGTG
* * *
65087562 AATCTTATCTCCCTGAAGTTGCGGTGGAATAGATTAAAGCCACA
1 AATC-TATCTCACTGAAGTTGCAGTGGAACAGATTAAAGCCACA
* * *
65087606 AATCTATCTCACTGAAGTTGTAGTGGAGCAGATTGAAGCCACA
1 AATCTATCTCACTGAAGTTGCAGTGGAACAGATTAAAGCCACA
65087649 AATCT
1 AATCT
65087654 TATCAAATCT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
43 38 0.90
44 4 0.10
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.27
Consensus pattern (43 bp):
AATCTATCTCACTGAAGTTGCAGTGGAACAGATTAAAGCCACA
Found at i:65087708 original size:147 final size:144
Alignment explanation
Indices: 65087418--65087722 Score: 353
Period size: 147 Copynumber: 2.1 Consensus size: 144
65087408 TATCGTGGAA
* * * *
65087418 AATCTTATCTCCCTGAAGTTTCAATAGAGCAGATTAAAGCCACTAATCTTATCTCCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAATAGAACAGATTAAAGCCACAAATCTTATCTCACTGAAGTTG
* * * * * *
65087483 CAGTGGAGCAAATTTAAATCATTGTGATGAATCTTATCTCCCTGAAGTTGCGGTGGAGCAGATTA
66 CAGTGGAGCAAATTGAAATCAATCTGATAAATCTTATCTCCCAGAAGTTGCAGTGGAGCAGATTA
*
65087548 AAATTATCGCGGTG
131 AAATTATCCCGGTG
** * *
65087562 AATCTTATCTCCCTGAAGTTGCGGTGGAATAGATTAAAGCCACAAATC-TATCTCACTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAATAGAACAGATTAAAGCCACAAATCTTATCTCACTGAAGTTG
* * * *
65087626 TAGTGGAGCAGATTGAAGCCA-CAAATCTTATCAAATCTTATCTCCCAGAAGTTGTAGTGGAGCA
66 CAGTGGAGCAAATTGAA---ATC-AATCTGAT-AAATCTTATCTCCCAGAAGTTGCAGTGGAGCA
* *
65087690 GATTGAAGTTATCCCGGTG
126 GATTAAAATTATCCCGGTG
65087709 AATCTTATCATCCC
1 AATCTTATC-TCCC
65087723 GGTGAATCTT
Statistics
Matches: 134, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
143 29 0.22
144 41 0.31
145 1 0.01
146 6 0.04
147 53 0.40
148 4 0.03
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (144 bp):
AATCTTATCTCCCTGAAGTTGCAATAGAACAGATTAAAGCCACAAATCTTATCTCACTGAAGTTG
CAGTGGAGCAAATTGAAATCAATCTGATAAATCTTATCTCCCAGAAGTTGCAGTGGAGCAGATTA
AAATTATCCCGGTG
Found at i:65087723 original size:18 final size:18
Alignment explanation
Indices: 65087700--65087739 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
65087690 GATTGAAGTT
65087700 ATCCCGGTGAATCTTATC
1 ATCCCGGTGAATCTTATC
65087718 ATCCCGGTGAATCTTATC
1 ATCCCGGTGAATCTTATC
65087736 -TCCC
1 ATCCC
65087740 TGAAGTTGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.20, C:0.33, G:0.15, T:0.33
Consensus pattern (18 bp):
ATCCCGGTGAATCTTATC
Found at i:65087780 original size:68 final size:68
Alignment explanation
Indices: 65087659--65087785 Score: 182
Period size: 68 Copynumber: 1.9 Consensus size: 68
65087649 AATCTTATCA
* * **
65087659 AATCTTATCTCCCAGAAGTTGTAGTGGAGCAGATTGAAGTTATCCCGGTGAATCTTATCATCCCG
1 AATCTTATCTCCCAGAAGTTGCAGTGGAGCAGATTGAAGTTATCACGACGAATCTTATCATCCCG
65087724 GTG
66 GTG
* * * *
65087727 AATCTTATCTCCCTGAAGTTGCATTGGAGCAGATTGAAGTTATTATGACGAATCTTATC
1 AATCTTATCTCCCAGAAGTTGCAGTGGAGCAGATTGAAGTTATCACGACGAATCTTATC
65087786 TCATTGAAGT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
68 51 1.00
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (68 bp):
AATCTTATCTCCCAGAAGTTGCAGTGGAGCAGATTGAAGTTATCACGACGAATCTTATCATCCCG
GTG
Found at i:65092843 original size:21 final size:23
Alignment explanation
Indices: 65092789--65092843 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
65092779 AGGCCCGCCC
*
65092789 ATATTAATTT-TTTTAAAATATT
1 ATATTATTTTATTTTAAAATATT
* *
65092811 ATATTATATTATTTTAATAT-TT
1 ATATTATTTTATTTTAAAATATT
65092833 A-ATTATTTTAT
1 ATATTATTTTAT
65092844 ACATTTTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
21 9 0.32
22 11 0.39
23 8 0.29
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (23 bp):
ATATTATTTTATTTTAAAATATT
Found at i:65099344 original size:21 final size:21
Alignment explanation
Indices: 65099320--65099384 Score: 76
Period size: 21 Copynumber: 3.0 Consensus size: 21
65099310 ATCTCAGCGT
* *
65099320 CCACCTCCATATCCACCACCG
1 CCACCGCCATATCCGCCACCG
65099341 CCACCGCCGCCATATCCGCCACCG
1 CCA---CCGCCATATCCGCCACCG
*
65099365 CCTCCGCCATATCCGCCACC
1 CCACCGCCATATCCGCCACC
65099385 ACCGCCTCCG
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
21 20 0.53
24 18 0.47
ACGTcount: A:0.18, C:0.58, G:0.11, T:0.12
Consensus pattern (21 bp):
CCACCGCCATATCCGCCACCG
Found at i:65099361 original size:18 final size:18
Alignment explanation
Indices: 65099338--65099390 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 18
65099328 ATATCCACCA
65099338 CCGCCACCGCCGCCATAT
1 CCGCCACCGCCGCCATAT
65099356 CCGCCACCGCCTCCGCCATAT
1 CCGCCACCG---CCGCCATAT
*
65099377 CCGCCACCACCGCC
1 CCGCCACCGCCGCC
65099391 TCCGCCGTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
18 14 0.45
21 17 0.55
ACGTcount: A:0.15, C:0.60, G:0.15, T:0.09
Consensus pattern (18 bp):
CCGCCACCGCCGCCATAT
Found at i:65099362 original size:24 final size:23
Alignment explanation
Indices: 65099326--65099411 Score: 77
Period size: 24 Copynumber: 3.6 Consensus size: 23
65099316 GCGTCCACCT
*
65099326 CCATATCCACCACCGCCACCGCCG
1 CCATATCCGCCACCGCC-CCGCCG
*
65099350 CCATATCCGCCACCG--CCTCCG
1 CCATATCCGCCACCGCCCCGCCG
65099371 CCATATCCGCCACCACCGCCTCCGCCG
1 CCATATCCG---CCACCGCC-CCGCCG
* *
65099398 TCATATCCTCCACC
1 CCATATCCGCCACC
65099412 ATTCCCGAAT
Statistics
Matches: 51, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
21 14 0.27
24 25 0.49
27 12 0.24
ACGTcount: A:0.17, C:0.57, G:0.12, T:0.14
Consensus pattern (23 bp):
CCATATCCGCCACCGCCCCGCCG
Found at i:65101967 original size:17 final size:18
Alignment explanation
Indices: 65101937--65101970 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
65101927 AAACAAGTGT
65101937 AAAACTATAAAAAAATAG
1 AAAACTATAAAAAAATAG
*
65101955 AAAA-TATACAAAAATA
1 AAAACTATAAAAAAATA
65101971 TTAATAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.74, C:0.06, G:0.03, T:0.18
Consensus pattern (18 bp):
AAAACTATAAAAAAATAG
Found at i:65102068 original size:9 final size:9
Alignment explanation
Indices: 65102054--65102080 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
65102044 TGCAAATATG
65102054 AAAAAAAAT
1 AAAAAAAAT
65102063 AAAAAAAAT
1 AAAAAAAAT
65102072 AAAAAAAAT
1 AAAAAAAAT
65102081 TAAATAGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:65102189 original size:9 final size:9
Alignment explanation
Indices: 65102167--65102241 Score: 53
Period size: 9 Copynumber: 7.9 Consensus size: 9
65102157 GAAAACAGGG
*
65102167 TTTATAGTT
1 TTTATAATT
*
65102176 CTTATAATT
1 TTTATAATT
65102185 TTTATATCTATT
1 TTTATA---ATT
*
65102197 TTTAGAATT
1 TTTATAATT
*
65102206 ATTAATATATT
1 -TTTATA-ATT
65102217 TTTATAATT
1 TTTATAATT
65102226 TTTA-AATT
1 TTTATAATT
*
65102234 TTTTTAAT
1 TTTATAAT
65102242 AGTTTTGCAC
Statistics
Matches: 52, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
8 7 0.13
9 25 0.48
10 9 0.17
11 3 0.06
12 8 0.15
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.63
Consensus pattern (9 bp):
TTTATAATT
Found at i:65102218 original size:20 final size:19
Alignment explanation
Indices: 65102193--65102239 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
65102183 TTTTTATATC
65102193 TATTTTTAGAATTATTAATA
1 TATTTTTAGAATTATTAA-A
* *
65102213 TATTTTTATAATTTTTAAA
1 TATTTTTAGAATTATTAAA
*
65102232 TTTTTTTA
1 TATTTTTA
65102240 ATAGTTTTGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 8 0.33
20 16 0.67
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
TATTTTTAGAATTATTAAA
Found at i:65104005 original size:19 final size:20
Alignment explanation
Indices: 65103968--65104005 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
65103958 CAGATAAATA
* *
65103968 ATGCAAGACATTAATTAAAG
1 ATGCAAGACATAAACTAAAG
65103988 ATGCAA-ACATAAACTAAA
1 ATGCAAGACATAAACTAAA
65104006 TTAAAACTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 10 0.62
20 6 0.38
ACGTcount: A:0.55, C:0.13, G:0.11, T:0.21
Consensus pattern (20 bp):
ATGCAAGACATAAACTAAAG
Found at i:65107226 original size:11 final size:13
Alignment explanation
Indices: 65107206--65107237 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
65107196 AATAAAATAA
65107206 TAAAATATC-ATT
1 TAAAATATCAATT
65107218 TAAAA-ATCAATT
1 TAAAATATCAATT
65107230 TAAAATAT
1 TAAAATAT
65107238 TAATAAACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 3 0.17
12 13 0.72
13 2 0.11
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (13 bp):
TAAAATATCAATT
Found at i:65108556 original size:19 final size:19
Alignment explanation
Indices: 65108532--65108581 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
65108522 GGTATAGAGC
65108532 ACACGCCCGTGTGCTAGGA
1 ACACGCCCGTGTGCTAGGA
*
65108551 ACACGCCCGTGTGCTAGGG
1 ACACGCCCGTGTGCTAGGA
65108570 ACACGCCCGTGT
1 ACACGCCCGTGT
65108582 CCTGAACCCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (19 bp):
ACACGCCCGTGTGCTAGGA
Found at i:65110226 original size:55 final size:53
Alignment explanation
Indices: 65110116--65110285 Score: 157
Period size: 55 Copynumber: 3.1 Consensus size: 53
65110106 TGTCTTGACA
* *
65110116 TTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCACGGTC
1 TTACATGGGATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGACACGGTC
* * * *
65110169 TTACATGGGA-CCTTTGCCTTATAGTAACTTATCAATGCCATGTCTTGACATGGTC
1 TTACATGGGATCC-TTGCCTTAT-G-AACTCACCAATGCCATGCCTTGACACGGTC
*** * *
65110224 TTACATGATTTCCTTGCCTTA-GAAACCTTACCAATTGCCATGCCTT-AGCATGGTC
1 TTACATGGGATCCTTGCCTTATG-AA-CTCACCAA-TGCCATGCCTTGA-CACGGTC
65110279 TTACATG
1 TTACATG
65110286 NNNNNNNNNN
Statistics
Matches: 98, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 21 0.21
54 9 0.09
55 64 0.65
56 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (53 bp):
TTACATGGGATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGACACGGTC
Found at i:65117165 original size:18 final size:18
Alignment explanation
Indices: 65117142--65117233 Score: 84
Period size: 17 Copynumber: 5.1 Consensus size: 18
65117132 GTTGTAAACA
*
65117142 TTTCGTGTTTCTAAAATT
1 TTTCGTGTTTCTAAAAAT
*
65117160 TTTCGTGTTTTTCTAAAAAAAA
1 TTTCGTG--TTTCT--AAAAAT
65117182 TTTCAG-GTTTC-AAAAAT
1 TTTC-GTGTTTCTAAAAAT
*
65117199 TTTCGTGTTT-TCAAAAT
1 TTTCGTGTTTCTAAAAAT
65117216 TTTCGTGTTT-TAAAAAT
1 TTTCGTGTTTCTAAAAAT
65117233 T
1 T
65117234 CTCATTTTTC
Statistics
Matches: 62, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
16 1 0.02
17 35 0.56
18 7 0.11
20 9 0.15
22 9 0.15
23 1 0.02
ACGTcount: A:0.29, C:0.10, G:0.11, T:0.50
Consensus pattern (18 bp):
TTTCGTGTTTCTAAAAAT
Found at i:65118808 original size:144 final size:144
Alignment explanation
Indices: 65118543--65118830 Score: 549
Period size: 144 Copynumber: 2.0 Consensus size: 144
65118533 CATACCAAGA
65118543 GCAAGAAGTACTTCCAAATTGGTAGGATCGGCCTCCTGAGCACGCATCATTGCTGCAATAGCCTG
1 GCAAGAAGTACTTCCAAATTGGTAGGATCGGCCTCCTGAGCACGCATCATTGCTGCAATAGCCTG
*
65118608 TACAGAGATATCTAATCAGTGAATTACATTTTGTCTACAAAGTCAAATATATGGACCCCAGTAAA
66 TACAGAGATATCTAATCAGTGAATTACATTTTGTCTACAAAGTCAAATATAAGGACCCCAGTAAA
*
65118673 GACCACGTAAAACT
131 GACCACATAAAACT
*
65118687 GCAAGAAGTACTTCCAGATTGGTAGGATCGGCCTCCTGAGCACGCATCATTGCTGCAATAGCCTG
1 GCAAGAAGTACTTCCAAATTGGTAGGATCGGCCTCCTGAGCACGCATCATTGCTGCAATAGCCTG
65118752 TACAGAGATATCTAATCAGTGAATTACATTTTGTCTACAAAGTCAAATATAAGGACCCCAGTAAA
66 TACAGAGATATCTAATCAGTGAATTACATTTTGTCTACAAAGTCAAATATAAGGACCCCAGTAAA
65118817 GACCACATAAAACT
131 GACCACATAAAACT
65118831 ACAGGTGCAT
Statistics
Matches: 141, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
144 141 1.00
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (144 bp):
GCAAGAAGTACTTCCAAATTGGTAGGATCGGCCTCCTGAGCACGCATCATTGCTGCAATAGCCTG
TACAGAGATATCTAATCAGTGAATTACATTTTGTCTACAAAGTCAAATATAAGGACCCCAGTAAA
GACCACATAAAACT
Found at i:65136292 original size:22 final size:21
Alignment explanation
Indices: 65136274--65136314 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
65136264 GGGGAAATTA
65136274 AAGAAAAACAAAAAAGAAATGT
1 AAGAAAAA-AAAAAAGAAATGT
*
65136296 TAGAAAAAAAAAAAGAAAT
1 AAGAAAAAAAAAAAGAAAT
65136315 AGGATTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.76, C:0.02, G:0.12, T:0.10
Consensus pattern (21 bp):
AAGAAAAAAAAAAAGAAATGT
Found at i:65140735 original size:48 final size:48
Alignment explanation
Indices: 65140664--65140764 Score: 184
Period size: 48 Copynumber: 2.1 Consensus size: 48
65140654 ACAATAACAT
* *
65140664 AAATTAACATTCGCAAATAGAAATCAAACTAATAGGTTAAAAAGCTAA
1 AAATTAACATTCACAAATAGAAATCAAACTAAGAGGTTAAAAAGCTAA
65140712 AAATTAACATTCACAAATAGAAATCAAACTAAGAGGTTAAAAAGCTAA
1 AAATTAACATTCACAAATAGAAATCAAACTAAGAGGTTAAAAAGCTAA
65140760 AAATT
1 AAATT
65140765 TCAACCTCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.55, C:0.12, G:0.10, T:0.23
Consensus pattern (48 bp):
AAATTAACATTCACAAATAGAAATCAAACTAAGAGGTTAAAAAGCTAA
Found at i:65142206 original size:47 final size:47
Alignment explanation
Indices: 65142132--65142231 Score: 141
Period size: 47 Copynumber: 2.1 Consensus size: 47
65142122 CTTCAATAAA
*
65142132 GTTACATACAATATCTTTACCTAATTCAAAC-CACATAATCAAGCTTT
1 GTTACATACAATATCTCTACCTAATTC-AACTCACATAATCAAGCTTT
* * *
65142179 GTTACATACAATATCTCTACCTGATTCAGCTCACCTAATCAAGCTTT
1 GTTACATACAATATCTCTACCTAATTCAACTCACATAATCAAGCTTT
65142226 G-TACAT
1 GTTACAT
65142232 TAGGACTCTA
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
46 7 0.15
47 41 0.85
ACGTcount: A:0.34, C:0.25, G:0.07, T:0.34
Consensus pattern (47 bp):
GTTACATACAATATCTCTACCTAATTCAACTCACATAATCAAGCTTT
Found at i:65145064 original size:31 final size:31
Alignment explanation
Indices: 65145001--65145083 Score: 80
Period size: 31 Copynumber: 2.7 Consensus size: 31
65144991 CAAACCCAGG
* *
65145001 TATATCAAAACCAGGG-ATCCCTGGAATGGGA
1 TATACCAAAACCAGGGTAT-CCTGGAATAGGA
**
65145032 TATACCAAAACCAGGGTATCCTTTAATAGGA
1 TATACCAAAACCAGGGTATCCTGGAATAGGA
* *
65145063 TATCCCCAAACC-GGGATATCC
1 TATACCAAAACCAGGG-TATCC
65145084 CTGGCCGGAA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
30 3 0.07
31 39 0.89
32 2 0.05
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (31 bp):
TATACCAAAACCAGGGTATCCTGGAATAGGA
Found at i:65146961 original size:10 final size:11
Alignment explanation
Indices: 65146936--65146962 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
65146926 TCCTTATATC
65146936 TTTTTGCAATA
1 TTTTTGCAATA
65146947 TTTTTGCAATA
1 TTTTTGCAATA
65146958 TTTTT
1 TTTTT
65146963 AAATCGGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.63
Consensus pattern (11 bp):
TTTTTGCAATA
Found at i:65165243 original size:1 final size:1
Alignment explanation
Indices: 65165237--65165279 Score: 86
Period size: 1 Copynumber: 43.0 Consensus size: 1
65165227 CCCGATTCAG
65165237 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
65165280 CAGTATATAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:65176264 original size:51 final size:51
Alignment explanation
Indices: 65176184--65176289 Score: 203
Period size: 51 Copynumber: 2.1 Consensus size: 51
65176174 AGAAAGGATC
65176184 TTTCTGAAAAATTATTATAATTAAATTTCTTTATAATGGTTTGGTGGTCAA
1 TTTCTGAAAAATTATTATAATTAAATTTCTTTATAATGGTTTGGTGGTCAA
*
65176235 TTTCTGAAAAATTATTATAATTAACTTTCTTTATAATGGTTTGGTGGTCAA
1 TTTCTGAAAAATTATTATAATTAAATTTCTTTATAATGGTTTGGTGGTCAA
65176286 TTTC
1 TTTC
65176290 AGAATCGAAC
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.31, C:0.08, G:0.13, T:0.48
Consensus pattern (51 bp):
TTTCTGAAAAATTATTATAATTAAATTTCTTTATAATGGTTTGGTGGTCAA
Found at i:65177888 original size:50 final size:52
Alignment explanation
Indices: 65177787--65177913 Score: 168
Period size: 50 Copynumber: 2.5 Consensus size: 52
65177777 ATTTATGTGG
* * * *
65177787 AAGATAGAATTATATCAAAATAATAAATACACAAATACACACATACAGATAGA
1 AAGAAAGAA-TATATCAAAAGAATAAATACACAAACACACACAAACAGATAGA
* *
65177840 AAGAAAGAATATATCAAAAGAA-AAA-ACATATACACACACAAACAGATAGA
1 AAGAAAGAATATATCAAAAGAATAAATACACAAACACACACAAACAGATAGA
*
65177890 AAGAAAGAATATATCAAAATAATA
1 AAGAAAGAATATATCAAAAGAATA
65177914 TATATATGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
50 42 0.64
51 4 0.06
52 12 0.18
53 8 0.12
ACGTcount: A:0.62, C:0.12, G:0.09, T:0.17
Consensus pattern (52 bp):
AAGAAAGAATATATCAAAAGAATAAATACACAAACACACACAAACAGATAGA
Found at i:65177951 original size:50 final size:50
Alignment explanation
Indices: 65177897--65177996 Score: 173
Period size: 50 Copynumber: 2.0 Consensus size: 50
65177887 AGAAAGAAAG
* * *
65177897 AATATATCAAAATAATATATATATGCACATTTCACTTACAGATGCATGCA
1 AATATATCAAAAGAATATATACATACACATTTCACTTACAGATGCATGCA
65177947 AATATATCAAAAGAATATATACATACACATTTCACTTACAGATGCATGCA
1 AATATATCAAAAGAATATATACATACACATTTCACTTACAGATGCATGCA
65177997 GCGAAATTTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.45, C:0.17, G:0.08, T:0.30
Consensus pattern (50 bp):
AATATATCAAAAGAATATATACATACACATTTCACTTACAGATGCATGCA
Found at i:65180845 original size:20 final size:20
Alignment explanation
Indices: 65180802--65180849 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
65180792 GCTGTTTTGT
65180802 TATGGGCCAACTGTATTGAA
1 TATGGGCCAACTGTATTGAA
*
65180822 -ATGGGCCCAACTGTGTT-AA
1 TATGGG-CCAACTGTATTGAA
65180841 TAT-GGCCAA
1 TATGGGCCAA
65180850 GGCCCAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 4 0.16
19 9 0.36
20 12 0.48
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (20 bp):
TATGGGCCAACTGTATTGAA
Found at i:65183832 original size:3 final size:3
Alignment explanation
Indices: 65183824--65184069 Score: 80
Period size: 3 Copynumber: 81.3 Consensus size: 3
65183814 TAATTTAATA
* * *
65183824 TAT TAT TAT TAC TAT TAT TAT TAT T-T TAC TAT TAT TAT CTAA TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
* *** * *
65183868 TAT TAT TGT TAT CGC TAT TAT TAT TAT T-T TAC TAT TAT AACT TAAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T T-AT
* * * * * * *
65183914 GTGT TAT TAT TAC TACT T-T TAT TTT TAT TTT TAT TTT TAT TAC CAT
1 -TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
65183960 TAT T-T T-T TCT TAC TAT TAT TACT TA- CAT TCGT TAG TAT CAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT T-AT TAT TAT TAT TAT
* * * *
65184004 TAAT T-T TAT CT-T TAT T-T TCTT TAC TAT TAT TTT TAT TAT CAT TAAT
1 T-AT TAT TAT -TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT T-AT
65184050 TATT TAT TAT TAT TAT TAT T
1 TA-T TAT TAT TAT TAT TAT T
65184070 TCTTATTTTG
Statistics
Matches: 173, Mismatches: 49, Indels: 42
0.66 0.19 0.16
Matches are distributed among these distances:
2 18 0.10
3 130 0.75
4 23 0.13
5 2 0.01
ACGTcount: A:0.28, C:0.09, G:0.02, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:65183868 original size:44 final size:44
Alignment explanation
Indices: 65183818--65183936 Score: 143
Period size: 47 Copynumber: 2.6 Consensus size: 44
65183808 ATTAACTAAT
*
65183818 TTAATATATTATTATTACTATTATTATTATTTTACTATTATTA-
1 TTAATATATTATTATTACTATTATTATTATTTTACTATTATAAC
*
65183861 TCTAATATATTATTGTTATCGCTATTATTATTATTTTACTATTATAAC
1 T-TAATATATTATTATTA---CTATTATTATTATTTTACTATTATAAC
* *
65183909 TTAATGTGTTATTATTACTACTT-TTATT
1 TTAATATATTATTATTACTA-TTATTATT
65183937 TTTATTTTTA
Statistics
Matches: 65, Mismatches: 5, Indels: 11
0.80 0.06 0.14
Matches are distributed among these distances:
43 1 0.02
44 23 0.35
45 2 0.03
47 38 0.58
48 1 0.02
ACGTcount: A:0.31, C:0.08, G:0.03, T:0.58
Consensus pattern (44 bp):
TTAATATATTATTATTACTATTATTATTATTTTACTATTATAAC
Found at i:65188781 original size:23 final size:23
Alignment explanation
Indices: 65188754--65188801 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
65188744 CGTTCATATT
*
65188754 TTATGGCACAAATAATTTCATCA
1 TTATGGCACAAACAATTTCATCA
65188777 TTATGGCACAAACAATTTCATCA
1 TTATGGCACAAACAATTTCATCA
65188800 TT
1 TT
65188802 CTTTTTTCCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (23 bp):
TTATGGCACAAACAATTTCATCA
Found at i:65193517 original size:20 final size:20
Alignment explanation
Indices: 65193480--65193518 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
65193470 TTATTAATTT
*
65193480 TTTTTAATAACAATAATGAA
1 TTTTTAATAAAAATAATGAA
65193500 TTTTTAA-AAAAATCAATGA
1 TTTTTAATAAAAAT-AATGA
65193519 TTGAAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.38
Consensus pattern (20 bp):
TTTTTAATAAAAATAATGAA
Found at i:65193612 original size:13 final size:13
Alignment explanation
Indices: 65193596--65193620 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
65193586 TTGAAAAATA
65193596 CTTTTGAGAAGTG
1 CTTTTGAGAAGTG
65193609 CTTTTGAGAAGT
1 CTTTTGAGAAGT
65193621 TTGGTTTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.28, T:0.40
Consensus pattern (13 bp):
CTTTTGAGAAGTG
Found at i:65193897 original size:33 final size:35
Alignment explanation
Indices: 65193800--65193897 Score: 82
Period size: 33 Copynumber: 2.9 Consensus size: 35
65193790 GTTAATATTT
*
65193800 TAATATATGAAATATAAATTTTAAATATTT--TTAAG
1 TAATATAT-AAAT-TATATTTTAAATATTTAATTAAG
* * *
65193835 TAATAAATATTAATTAT-TTGTAAA-CTTTAATT-AG
1 TAAT--ATATAAATTATATTTTAAATATTTAATTAAG
65193869 -AATATATAAATTATATTTTAAATATTTAA
1 TAATATATAAATTATATTTTAAATATTTAA
65193898 ATATAACCAT
Statistics
Matches: 50, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
31 10 0.20
32 6 0.12
33 11 0.22
34 8 0.16
35 8 0.16
36 3 0.06
37 4 0.08
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.47
Consensus pattern (35 bp):
TAATATATAAATTATATTTTAAATATTTAATTAAG
Found at i:65198674 original size:41 final size:41
Alignment explanation
Indices: 65198426--65198663 Score: 395
Period size: 41 Copynumber: 5.8 Consensus size: 41
65198416 TTTATCGTTA
* * * *
65198426 GTGACATAATTCAGACTTTACGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
* *
65198467 GTGACATAATTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
* *
65198508 GTGACATAATTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
65198549 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
65198590 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
*
65198631 GTGACACATTTCGGACTATAAGTCTAGCAGGCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCT
65198664 AAGAGCCGGT
Statistics
Matches: 192, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 192 1.00
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (41 bp):
GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
Found at i:65198934 original size:33 final size:32
Alignment explanation
Indices: 65198878--65198941 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
65198868 ATATATATAT
65198878 ATATATATATATGTTGCATTCGGCATAGGTGG
1 ATATATATATATGTTGCATTCGGCATAGGTGG
* *
65198910 ATATATTTATGTGTATGCATTCGGCATAGGTG
1 ATATATATATATGT-TGCATTCGGCATAGGTG
65198942 AAAATAAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.27, C:0.09, G:0.25, T:0.39
Consensus pattern (32 bp):
ATATATATATATGTTGCATTCGGCATAGGTGG
Found at i:65198958 original size:33 final size:33
Alignment explanation
Indices: 65198885--65198958 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 33
65198875 TATATATATA
* * **
65198885 TATATGT-TGCATTCGGCATAGGTGGATATATT
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
65198917 TATGTGTATGCATTCGGCATAGGTGAAAATAAG
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
65198950 TGTATGTAT
1 TATATGTAT
65198959 CTATGCATTC
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
32 6 0.18
33 28 0.82
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (33 bp):
TATATGTATGCATTCGGCATAGGTGAAAATAAG
Found at i:65206179 original size:41 final size:41
Alignment explanation
Indices: 65206122--65206360 Score: 299
Period size: 41 Copynumber: 5.8 Consensus size: 41
65206112 GAATATAATA
* *
65206122 CAGACGTTACGTCTAGCAGGCTTAATGCCGGTGAAGTA-A-TT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG-A-TACATTT
65206163 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
65206204 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
* *
65206245 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
* * *
65206286 CAGACTATATGTCTAGCAGGC-TAAGTGCCGGTG-TAC-TGAAT
1 CAGACTTTAAGTCTAGCAGGCTTAA-TGCCGGTGATACAT--TT
* * **
65206327 CAGGCTTTAAGCCTAGCAGGCAAAATGCCGGTGA
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
65206361 ATCTGTTTAA
Statistics
Matches: 181, Mismatches: 10, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 3 0.02
40 8 0.04
41 168 0.93
42 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (41 bp):
CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
Found at i:65210438 original size:14 final size:15
Alignment explanation
Indices: 65210412--65210444 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
65210402 ATTGAGCAAC
65210412 AAAAGAGAAAGAAAG
1 AAAAGAGAAAGAAAG
*
65210427 AAAAGA-AAAGAAAT
1 AAAAGAGAAAGAAAG
65210441 AAAA
1 AAAA
65210445 ATCTGAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (15 bp):
AAAAGAGAAAGAAAG
Found at i:65211999 original size:27 final size:26
Alignment explanation
Indices: 65211968--65212061 Score: 84
Period size: 27 Copynumber: 3.5 Consensus size: 26
65211958 AATAACGAAT
65211968 AAATTTAAAATAAATAATGTGAAAAAG
1 AAATTTAAAATAAATAATGT-AAAAAG
* * *
65211995 AAATTTAATATCAACAATGTACAAAA-
1 AAATTTAAAATAAATAATGTA-AAAAG
*
65212021 CAATTTAAAAATAGAATATATGT-AAAAG
1 AAATTT-AAAATA-AATA-ATGTAAAAAG
65212049 AAATTTTAAAATA
1 AAA-TTTAAAATA
65212062 GGTAATATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
26 6 0.11
27 29 0.55
28 11 0.21
29 7 0.13
ACGTcount: A:0.60, C:0.04, G:0.07, T:0.29
Consensus pattern (26 bp):
AAATTTAAAATAAATAATGTAAAAAG
Found at i:65212359 original size:24 final size:24
Alignment explanation
Indices: 65212331--65212437 Score: 67
Period size: 25 Copynumber: 4.3 Consensus size: 24
65212321 TAAAACAAAC
*
65212331 AATAATAAAAACCATTTTAAAATA
1 AATAATAAAAACAATTTTAAAATA
* ** *
65212355 AATAA-AAAAA-GAGCTTAACATA
1 AATAATAAAAACAATTTTAAAATA
*
65212377 AA-ATATATAAAACAATTTCAAAATA
1 AATA-ATA-AAAACAATTTTAAAATA
*
65212402 AATAATATATAAGTCAATTTTAAAAATA
1 AATAATA-A-AA-ACAATTTT-AAAATA
*
65212430 AAAAATAA
1 AATAATAA
65212438 GAATCTAAAG
Statistics
Matches: 63, Mismatches: 12, Indels: 13
0.72 0.14 0.15
Matches are distributed among these distances:
21 1 0.02
22 11 0.17
23 6 0.10
24 9 0.14
25 14 0.22
26 3 0.05
27 7 0.11
28 12 0.19
ACGTcount: A:0.64, C:0.07, G:0.03, T:0.27
Consensus pattern (24 bp):
AATAATAAAAACAATTTTAAAATA
Found at i:65212402 original size:25 final size:26
Alignment explanation
Indices: 65212374--65212432 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 26
65212364 AGAGCTTAAC
*
65212374 ATAAAATATATAAAACAA-TTTCAAA
1 ATAAAATATATAAAACAATTTTAAAA
**
65212399 ATAAATAATATATAAGTCAATTTTAAAA
1 AT-AA-AATATATAAAACAATTTTAAAA
65212427 ATAAAA
1 ATAAAA
65212433 AATAAGAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
25 2 0.07
26 4 0.14
27 14 0.50
28 8 0.29
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.31
Consensus pattern (26 bp):
ATAAAATATATAAAACAATTTTAAAA
Found at i:65212408 original size:27 final size:28
Alignment explanation
Indices: 65212376--65212436 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
65212366 AGCTTAACAT
*
65212376 AAAATATATAAAACAA-TTTCAAAATAA
1 AAAATATATAAAACAATTTTAAAAATAA
* **
65212403 ATAATATATAAGTCAATTTTAAAAATAA
1 AAAATATATAAAACAATTTTAAAAATAA
65212431 AAAATA
1 AAAATA
65212437 AGAATCTAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 13 0.46
28 15 0.54
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.30
Consensus pattern (28 bp):
AAAATATATAAAACAATTTTAAAAATAA
Found at i:65218419 original size:46 final size:46
Alignment explanation
Indices: 65218338--65218433 Score: 133
Period size: 46 Copynumber: 2.1 Consensus size: 46
65218328 TTGGCGAGTG
* * *
65218338 GAGG-TGTACCACCCCTTACCCGTATTCGGCACCAGAATAGGGTAC
1 GAGGCTGTAACACCCCTTACCCGTATCCGGCACCAGAACAGGGTAC
*
65218383 GAGGCTGTAACACCCCTTACCCGTATCCGAG-GCCAGAACAGGGTAC
1 GAGGCTGTAACACCCCTTACCCGTATCCG-GCACCAGAACAGGGTAC
65218429 GAGGC
1 GAGGC
65218434 ATTACCGAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
45 4 0.09
46 40 0.89
47 1 0.02
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.17
Consensus pattern (46 bp):
GAGGCTGTAACACCCCTTACCCGTATCCGGCACCAGAACAGGGTAC
Found at i:65226320 original size:43 final size:43
Alignment explanation
Indices: 65226273--65226358 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
65226263 AGAAGAGAAA
65226273 GAGTGCAATAAACTATAGACAATTACAAAAAAATTGGCTGATC
1 GAGTGCAATAAACTATAGACAATTACAAAAAAATTGGCTGATC
65226316 GAGTGCAATAAACTATAGACAATTACAAAAAAATTGGCTGATC
1 GAGTGCAATAAACTATAGACAATTACAAAAAAATTGGCTGATC
65226359 ATGAATATGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.47, C:0.14, G:0.16, T:0.23
Consensus pattern (43 bp):
GAGTGCAATAAACTATAGACAATTACAAAAAAATTGGCTGATC
Found at i:65235414 original size:10 final size:10
Alignment explanation
Indices: 65235399--65235424 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
65235389 AAACATATGT
65235399 ATATTTGACC
1 ATATTTGACC
65235409 ATATTTGACC
1 ATATTTGACC
65235419 ATATTT
1 ATATTT
65235425 CATTCATCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.31, C:0.15, G:0.08, T:0.46
Consensus pattern (10 bp):
ATATTTGACC
Found at i:65257187 original size:20 final size:20
Alignment explanation
Indices: 65257162--65257215 Score: 90
Period size: 20 Copynumber: 2.6 Consensus size: 20
65257152 GAAGTCCAGA
*
65257162 TTTTTTTTTAAAAAACCGAT
1 TTTTTTTTTAAAAAACCAAT
65257182 TTTTTTTTTAAAAAACCAAT
1 TTTTTTTTTAAAAAACCAAT
65257202 TTTTTTTTTGAAAA
1 TTTTTTTTT-AAAA
65257216 TCTTCATTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 28 0.88
21 4 0.12
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.54
Consensus pattern (20 bp):
TTTTTTTTTAAAAAACCAAT
Found at i:65257762 original size:19 final size:19
Alignment explanation
Indices: 65257726--65257764 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
65257716 TTTTCATCAT
* *
65257726 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
65257745 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
65257764 A
1 A
65257765 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:65258285 original size:27 final size:28
Alignment explanation
Indices: 65258228--65258297 Score: 88
Period size: 27 Copynumber: 2.5 Consensus size: 28
65258218 GTGACGGAGT
* * *
65258228 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATATTATGTAGCAGGGC
65258257 CACCAGAACAGATA-TATGTAGCAGGGC
1 CACCAGAACAGATATTATGTAGCAGGGC
*
65258284 CACAAGAACAGATA
1 CACCAGAACAGATA
65258298 ATTTGTGGCA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 23 0.62
28 7 0.19
29 7 0.19
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (28 bp):
CACCAGAACAGATATTATGTAGCAGGGC
Found at i:65258471 original size:28 final size:28
Alignment explanation
Indices: 65258424--65258516 Score: 150
Period size: 28 Copynumber: 3.3 Consensus size: 28
65258414 AAATTAACCC
* * *
65258424 TAGGGGTATGAAGGTTATTTTGCATACA
1 TAGGGGTATTATGGTAATTTTGCATACA
65258452 TAGGGGTATTATGGTAATTTTGCATACA
1 TAGGGGTATTATGGTAATTTTGCATACA
*
65258480 TAGGGATATTATGGTAATTTTGCATACA
1 TAGGGGTATTATGGTAATTTTGCATACA
65258508 TAGGGGTAT
1 TAGGGGTAT
65258517 AATAGTACAT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 60 1.00
ACGTcount: A:0.29, C:0.06, G:0.27, T:0.38
Consensus pattern (28 bp):
TAGGGGTATTATGGTAATTTTGCATACA
Found at i:65261675 original size:22 final size:22
Alignment explanation
Indices: 65261642--65261696 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
65261632 TAAATACGTT
65261642 TGGCAC-GAAGCCATAGTCAAGA
1 TGGCACAG-AGCCATAGTCAAGA
* * * *
65261664 TGGCACAGAGCCATATTTAGGT
1 TGGCACAGAGCCATAGTCAAGA
65261686 TGGCACAGAGC
1 TGGCACAGAGC
65261697 TATGATCAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 27 0.96
23 1 0.04
ACGTcount: A:0.31, C:0.22, G:0.29, T:0.18
Consensus pattern (22 bp):
TGGCACAGAGCCATAGTCAAGA
Found at i:65261905 original size:41 final size:41
Alignment explanation
Indices: 65261847--65262008 Score: 216
Period size: 41 Copynumber: 4.0 Consensus size: 41
65261837 TAAAAACCAC
* * * * * *
65261847 CGGTGGATCTACAGTCGTTAAGGAACCATGCAATCCTTAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
*
65261888 CGGTGGATCCACGGTCGTTAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
* *
65261929 CGGTGGATCCACGGTTGTCAAGAAACCATGCGATCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
** *
65261970 TAGTGGATCCACGGTCGTCCAGCAACCATGCGATCCTCA
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCA
65262009 TATACTTCCT
Statistics
Matches: 108, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 108 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (41 bp):
CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
Found at i:65262449 original size:108 final size:108
Alignment explanation
Indices: 65262275--65262570 Score: 425
Period size: 108 Copynumber: 2.7 Consensus size: 108
65262265 CCAATCATTT
* * * *
65262275 TACACTACAAGAGTATTTCGGTAATTTTACACAAT-AAGGGTATTTTGATAATTTTACAAATTAG
1 TACACTACAAGGGTATTTCGATAATTTTACA-AATCGAGGGTATTTCGATAATTTTACAAATTAG
* *
65262339 GGGTATTTCGATAATTTTAAAAATTGAGGGTATTTCGATAATTC
65 GGGTATTTCGATAATTTTAAAAATCGAGGGTATTTCGATAATTA
* * * *
65262383 TACACCACAAGGGTATTTCTATAATTTTACAAATCGAGGGTATTTCGATAATTTTATAAATCAGG
1 TACACTACAAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATTAGG
**
65262448 GGTATTTCGATAATTTTTTAAATCGAGGGTATTTCGATAATTA
66 GGTATTTCGATAATTTTAAAAATCGAGGGTATTTCGATAATTA
* *
65262491 TACACTACAAGGGTATTTCGATAATTTTACAAATCG-GGGATATTTCTATAATTTTACAAATTGG
1 TACACTACAAGGGTATTTCGATAATTTTACAAATCGAGGG-TATTTCGATAATTTTACAAATTAG
*
65262555 GGGTATTTCGGTAATT
65 GGGTATTTCGATAATT
65262571 CTACACTACA
Statistics
Matches: 167, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
107 6 0.04
108 161 0.96
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.39
Consensus pattern (108 bp):
TACACTACAAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATTAGG
GGTATTTCGATAATTTTAAAAATCGAGGGTATTTCGATAATTA
Found at i:65262534 original size:27 final size:26
Alignment explanation
Indices: 65262287--65262680 Score: 276
Period size: 27 Copynumber: 14.6 Consensus size: 26
65262277 CACTACAAGA
* **
65262287 GTATTTCGGTAATTTTACACAATAAGG
1 GTATTTCGATAATTTTACA-AATCGGG
* *
65262314 GTATTTTGATAATTTTACAAATTAGGG
1 GTATTTCGATAATTTTACAAA-TCGGG
* *
65262341 GTATTTCGATAATTTTAAAAATTGAGG
1 GTATTTCGATAATTTTACAAATCG-GG
* * *
65262368 GTATTTCGATAATTCTACACCA-CAAGG
1 GTATTTCGATAATTTTACA-AATC-GGG
*
65262395 GTATTTCTATAATTTTACAAATCGAGG
1 GTATTTCGATAATTTTACAAATCG-GG
*
65262422 GTATTTCGATAATTTTATAAATCAGGG
1 GTATTTCGATAATTTTACAAATC-GGG
**
65262449 GTATTTCGATAATTTTTTAAATCGAGG
1 GTATTTCGATAATTTTACAAATCG-GG
* * *
65262476 GTATTTCGATAATTATAC-ACTACAAGG
1 GTATTTCGATAATTTTACAAAT-C-GGG
65262503 GTATTTCGATAATTTTACAAATCGGG
1 GTATTTCGATAATTTTACAAATCGGG
* *
65262529 GATATTTCTATAATTTTACAAATTGGGG
1 G-TATTTCGATAATTTTACAAA-TCGGG
* * * *
65262557 GTATTTCGGTAATTCTAC-ACTACAAGG
1 GTATTTCGATAATTTTACAAAT-C-GGG
* *
65262584 GTATTTC-AGTAATTTTATAAATAGGGG
1 GTATTTCGA-TAATTTTACAAAT-CGGG
* * *
65262611 GTATTT-TAGTAATTTTGCAAATTAGGG
1 GTATTTCGA-TAATTTTACAAA-TCGGG
* * * *
65262638 GTATTTTGGTAATTTTGCTAATCGAGG
1 GTATTTCGATAATTTTACAAATCG-GG
* *
65262665 GTATTTTGGTAATTTT
1 GTATTTCGATAATTTT
65262681 GTAAACCAAG
Statistics
Matches: 299, Mismatches: 47, Indels: 42
0.77 0.12 0.11
Matches are distributed among these distances:
25 1 0.00
26 14 0.05
27 271 0.91
28 13 0.04
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (26 bp):
GTATTTCGATAATTTTACAAATCGGG
Found at i:65262559 original size:54 final size:54
Alignment explanation
Indices: 65262287--65262616 Score: 332
Period size: 54 Copynumber: 6.1 Consensus size: 54
65262277 CACTACAAGA
* * * *
65262287 GTATTTCGGTAATTTTACACAAT-AAGGGTATTTTGATAATTTTACAAATTAGGG
1 GTATTTCGATAATTTTACA-AATCGAGGGTATTTCGATAATTTTACAAATCAGGG
* * * * *
65262341 GTATTTCGATAATTTTAAAAATTGAGGGTATTTCGATAATTCTACACCA-CAAGG
1 GTATTTCGATAATTTTACAAATCGAGGGTATTTCGATAATTTTACA-AATCAGGG
* *
65262395 GTATTTCTATAATTTTACAAATCGAGGGTATTTCGATAATTTTATAAATCAGGG
1 GTATTTCGATAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCAGGG
** * * *
65262449 GTATTTCGATAATTTTTTAAATCGAGGGTATTTCGATAATTATAC-ACTACAAGG
1 GTATTTCGATAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAAT-CAGGG
* **
65262503 GTATTTCGATAATTTTACAAATCG-GGGATATTTCTATAATTTTACAAATTGGGG
1 GTATTTCGATAATTTTACAAATCGAGGG-TATTTCGATAATTTTACAAATCAGGG
* * * * *
65262557 GTATTTCGGTAATTCTAC-ACTACAAGGGTATTTC-AGTAATTTTATAAAT-AGGGG
1 GTATTTCGATAATTTTACAAAT-CGAGGGTATTTCGA-TAATTTTACAAATCA-GGG
65262611 GTATTT
1 GTATTT
65262617 TAGTAATTTT
Statistics
Matches: 230, Mismatches: 36, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
53 12 0.05
54 212 0.92
55 6 0.03
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (54 bp):
GTATTTCGATAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCAGGG
Found at i:65262559 original size:81 final size:80
Alignment explanation
Indices: 65262287--65262643 Score: 321
Period size: 81 Copynumber: 4.4 Consensus size: 80
65262277 CACTACAAGA
* * * * * *
65262287 GTATTTCGGTAATTTTACACAAT-AAGGGTATTTTGATAATTTTACA-AATTAGGGGTATTTCGA
1 GTATTTCGATAATTTTACA-AATCAAGGGTATTTCGATAATTATACACTA-CAAGGGTATTTCGA
* *
65262350 TAATTTTAAAAATTGAGG
64 TAATTTTATAAATCG-GG
* * * * * *
65262368 GTATTTCGATAATTCTACACCA-CAAGGGTATTTCTATAATTTTACA-AATCGAGGGTATTTCGA
1 GTATTTCGATAATTTTACA-AATCAAGGGTATTTCGATAATTATACACTA-CAAGGGTATTTCGA
65262431 TAATTTTATAAATCAGGG
64 TAATTTTATAAATC-GGG
** *
65262449 GTATTTCGATAATTTTTTAAATCGAGGGTATTTCGATAATTATACACTACAAGGGTATTTCGATA
1 GTATTTCGATAATTTTACAAATCAAGGGTATTTCGATAATTATACACTACAAGGGTATTTCGATA
*
65262514 ATTTTACAAATCGGG
66 ATTTTATAAATCGGG
* *** * *
65262529 GATATTTCTATAATTTTACAAATTGGGGGTATTTCGGTAATTCTACACTACAAGGGTATTTC-AG
1 G-TATTTCGATAATTTTACAAATCAAGGGTATTTCGATAATTATACACTACAAGGGTATTTCGA-
*
65262593 TAATTTTATAAATAGGGG
64 TAATTTTATAAAT-CGGG
* * * *
65262611 GTATTT-TAGTAATTTTGCAAATTAGGGGTATTT
1 GTATTTCGA-TAATTTTACAAATCAAGGGTATTT
65262644 TGGTAATTTT
Statistics
Matches: 237, Mismatches: 31, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
80 8 0.03
81 223 0.94
82 6 0.03
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (80 bp):
GTATTTCGATAATTTTACAAATCAAGGGTATTTCGATAATTATACACTACAAGGGTATTTCGATA
ATTTTATAAATCGGG
Found at i:65262640 original size:54 final size:54
Alignment explanation
Indices: 65262579--65262705 Score: 148
Period size: 54 Copynumber: 2.4 Consensus size: 54
65262569 TTCTACACTA
* *
65262579 CAAGGGTATTTCAGTAATTTT-ATAAATAGGGGGTATTTTAGTAATTTTGCAAAT
1 CAAGGGTATTTCAGTAATTTTGAT-AATAGAGGGTATTTTAGTAATTTTGCAAAC
* * ** * * * *
65262633 TAGGGGTATTTTGGTAATTTTGCTAATCGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTGATAATAGAGGGTATTTTAGTAATTTTGCAAAC
65262687 CAAGGGTATTTCAGTAATT
1 CAAGGGTATTTCAGTAATT
65262706 CTACCCTACA
Statistics
Matches: 58, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
54 57 0.98
55 1 0.02
ACGTcount: A:0.29, C:0.06, G:0.23, T:0.42
Consensus pattern (54 bp):
CAAGGGTATTTCAGTAATTTTGATAATAGAGGGTATTTTAGTAATTTTGCAAAC
Found at i:65262703 original size:27 final size:27
Alignment explanation
Indices: 65262579--65262705 Score: 123
Period size: 27 Copynumber: 4.7 Consensus size: 27
65262569 TTCTACACTA
* *
65262579 CAAGGGTATTTCAGTAATTTTATAAAT
1 CAAGGGTATTTTAGTAATTTTGTAAAT
* *
65262606 -AGGGGGTATTTTAGTAATTTTGCAAAT
1 CA-AGGGTATTTTAGTAATTTTGTAAAT
* * *
65262633 TAGGGGTATTTTGGTAATTTTGCT-AAT
1 CAAGGGTATTTTAGTAATTTTG-TAAAT
* * *
65262660 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTGTAAAT
*
65262687 CAAGGGTATTTCAGTAATT
1 CAAGGGTATTTTAGTAATT
65262706 CTACCCTACA
Statistics
Matches: 83, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
26 2 0.02
27 80 0.96
28 1 0.01
ACGTcount: A:0.29, C:0.06, G:0.23, T:0.42
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTGTAAAT
Found at i:65262717 original size:27 final size:27
Alignment explanation
Indices: 65262687--65262742 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
65262677 TTTTGTAAAC
* *
65262687 CAAGGGTATTTCAGTAATTCTACCCTA
1 CAAGGGCATTTCAGTAATACTACCCTA
* *
65262714 CAAGGGCATTTTAGTAATACTAGCCTA
1 CAAGGGCATTTCAGTAATACTACCCTA
65262741 CA
1 CA
65262743 TATATGAGAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.30
Consensus pattern (27 bp):
CAAGGGCATTTCAGTAATACTACCCTA
Found at i:65265648 original size:22 final size:22
Alignment explanation
Indices: 65265600--65265658 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
65265590 GTAAATACGT
*
65265600 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
65265622 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
65265644 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
65265659 GATCAGAATA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:65265877 original size:41 final size:41
Alignment explanation
Indices: 65265811--65265926 Score: 169
Period size: 41 Copynumber: 2.8 Consensus size: 41
65265801 GCCACTGGTT
* * *
65265811 GATCCACGGTCGTCAAGTAAGCATGCGATCCTTAATCGGTG
1 GATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCGGTG
* * *
65265852 GATCTACGATCGTCAAGCAACCATGCGATCCTCAATTGGTG
1 GATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCGGTG
*
65265893 GATCCATGGTCGTCAAGCAACCATGCGATCCTCA
1 GATCCACGGTCGTCAAGCAACCATGCGATCCTCA
65265927 TAAACTTCCT
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 66 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (41 bp):
GATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCGGTG
Found at i:65266244 original size:54 final size:54
Alignment explanation
Indices: 65266199--65266484 Score: 246
Period size: 54 Copynumber: 5.3 Consensus size: 54
65266189 TTACACTACA
* *
65266199 AGGGTATTTCGGTAATTTTACACTACAAGGGTATTTCGATAATTTTACAAATTG
1 AGGGTATTTCGGTAATTCTACACTACAAGGGTATTTCGATAATTTTACAAATCG
* * * *
65266253 -GAGGTCTTTCGGTAATTCTGCACTACAAGGGTATTTTGATAATTTTACCAATCG
1 AG-GGTATTTCGGTAATTCTACACTACAAGGGTATTTCGATAATTTTACAAATCG
* * * * *
65266307 AGGGTATTTCGGTAATGT-TATA-AATTAGGGGTATTT-TAGTAATTTTACAAATCG
1 AGGGTATTTCGGTAAT-TCTACACTA-CAAGGGTATTTCGA-TAATTTTACAAATCG
* * * *
65266361 AGGGTATTTCGGTAATTCCAAACTACAATGGTATTTCGATAATTTTATAAATC-
1 AGGGTATTTCGGTAATTCTACACTACAAGGGTATTTCGATAATTTTACAAATCG
* * * * ** *
65266414 AGGGATATTTTGATAATTTTACA-AATTGAGGGTATTTCGATAATTTTGCAAATCG
1 AGGG-TATTTCGGTAATTCTACACTA-CAAGGGTATTTCGATAATTTTACAAATCG
*
65266469 -GGG-ATATTCAGTAATT
1 AGGGTAT-TTCGGTAATT
65266485 TAGTAAACTA
Statistics
Matches: 184, Mismatches: 36, Indels: 25
0.75 0.15 0.10
Matches are distributed among these distances:
52 2 0.01
53 16 0.09
54 162 0.88
55 4 0.02
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (54 bp):
AGGGTATTTCGGTAATTCTACACTACAAGGGTATTTCGATAATTTTACAAATCG
Found at i:65266284 original size:81 final size:81
Alignment explanation
Indices: 65266190--65266423 Score: 240
Period size: 81 Copynumber: 2.9 Consensus size: 81
65266180 CTTGTCATTT
*
65266190 TACACTACAAGGGTATTTCGGTAATTTTACACTACAAGGGTATTTCGATAATTTTACAAATT-GG
1 TACACTACAAGGGTATTTCGGTAATTTTACACTACAAGGGTATTTCGATAATTTTATAAATTAGG
* *
65266254 AGGTCTTTCGGTAATTC
66 -GGTATTTCAGTAATTC
* * * * * * *
65266271 TGCACTACAAGGGTATTTTGATAATTTTAC-CAATCGAGGGTATTTCGGTAATGTTATAAATTAG
1 TACACTACAAGGGTATTTCGGTAATTTTACACTA-CAAGGGTATTTCGATAATTTTATAAATTAG
* *
65266335 GGGTATTTTAGTAATTT
65 GGGTATTTCAGTAATTC
* * ** * * *
65266352 TACA-AATCGAGGGTATTTCGGTAATTCCAAACTACAATGGTATTTCGATAATTTTATAAATCAG
1 TACACTA-CAAGGGTATTTCGGTAATTTTACACTACAAGGGTATTTCGATAATTTTATAAATTAG
*
65266416 GGATATTT
65 GGGTATTT
65266424 TGATAATTTT
Statistics
Matches: 122, Mismatches: 27, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
80 3 0.02
81 115 0.94
82 4 0.03
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (81 bp):
TACACTACAAGGGTATTTCGGTAATTTTACACTACAAGGGTATTTCGATAATTTTATAAATTAGG
GGTATTTCAGTAATTC
Found at i:65266422 original size:27 final size:26
Alignment explanation
Indices: 65266199--65266476 Score: 170
Period size: 27 Copynumber: 10.3 Consensus size: 26
65266189 TTACACTACA
* *
65266199 AGGGTATTTCGGTAATTTTAC-ACTAC
1 AGGGTATTTCGATAATTTTACAAAT-C
*
65266225 AAGGGTATTTCGATAATTTTACAAATT
1 -AGGGTATTTCGATAATTTTACAAATC
* * * * * *
65266252 GGAGGTCTTTCGGTAATTCTGC-ACTAC
1 AG-GGTATTTCGATAATTTTACAAAT-C
* *
65266279 AAGGGTATTTTGATAATTTTACCAATC
1 -AGGGTATTTCGATAATTTTACAAATC
* * * *
65266306 GAGGGTATTTCGGTAATGTTATAAATT
1 -AGGGTATTTCGATAATTTTACAAATC
*
65266333 AGGGGTATTT-TAGTAATTTTACAAATC
1 A-GGGTATTTCGA-TAATTTTACAAATC
* *
65266360 GAGGGTATTTCGGTAA--TTCCAAACTAC
1 -AGGGTATTTCGATAATTTTACAAA-T-C
* *
65266387 AATGGTATTTCGATAATTTTATAAATC
1 -AGGGTATTTCGATAATTTTACAAATC
* *
65266414 AGGGATATTTTGATAATTTTACAAATTG
1 AGGG-TATTTCGATAATTTTACAAA-TC
*
65266442 AGGGTATTTCGATAATTTTGCAAATC
1 AGGGTATTTCGATAATTTTACAAATC
*
65266468 GGGGATATT
1 AGGG-TATT
65266477 CAGTAATTTA
Statistics
Matches: 190, Mismatches: 45, Indels: 32
0.71 0.17 0.12
Matches are distributed among these distances:
25 6 0.03
26 12 0.06
27 155 0.82
28 12 0.06
29 5 0.03
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (26 bp):
AGGGTATTTCGATAATTTTACAAATC
Found at i:65266424 original size:81 final size:81
Alignment explanation
Indices: 65266309--65266458 Score: 230
Period size: 81 Copynumber: 1.9 Consensus size: 81
65266299 ACCAATCGAG
* * * *
65266309 GGTATTTCGGTAATGTTATAAATTAGGGGTATTTT-AGTAATTTTACAAATCGAGGGTATTTCGG
1 GGTATTTCGATAATGTTATAAATCAGGGATATTTTGA-TAATTTTACAAATCGAGGGTATTTCGA
65266373 TAATTCCAAACTACAAT
65 TAATTCCAAACTACAAT
* *
65266390 GGTATTTCGATAATTTTATAAATCAGGGATATTTTGATAATTTTACAAATTGAGGGTATTTCGAT
1 GGTATTTCGATAATGTTATAAATCAGGGATATTTTGATAATTTTACAAATCGAGGGTATTTCGAT
65266455 AATT
66 AATT
65266459 TTGCAAATCG
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
81 61 0.98
82 1 0.02
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.41
Consensus pattern (81 bp):
GGTATTTCGATAATGTTATAAATCAGGGATATTTTGATAATTTTACAAATCGAGGGTATTTCGAT
AATTCCAAACTACAAT
Found at i:65269495 original size:22 final size:22
Alignment explanation
Indices: 65269439--65269497 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 22
65269429 GTAAATACGT
65269439 TTGGCAC-GAAGCCATAGTTAAG
1 TTGGCACAG-AGCCATAGTTAAG
* * * * *
65269461 ATGGTACAAAGCCATATTTAGG
1 TTGGCACAGAGCCATAGTTAAG
65269483 TTGGCACAGAGCCAT
1 TTGGCACAGAGCCAT
65269498 GATTAGAATA
Statistics
Matches: 28, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (22 bp):
TTGGCACAGAGCCATAGTTAAG
Found at i:65269704 original size:41 final size:41
Alignment explanation
Indices: 65269645--65269806 Score: 254
Period size: 41 Copynumber: 4.0 Consensus size: 41
65269635 TAAAAGCCAC
** *
65269645 CGGTGGATCCACGATCGTCAAGCAAGAATGTGATCCTTAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATGTGATCCTCAAT
*
65269686 CGGTGGATCCACGGTCGTCAAGCAACCATGCT-ATCCTCAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATG-TGATCCTCAAT
*
65269727 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATGTGATCCTCAAT
*
65269768 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCA
1 CGGTGGATCCACGATCGTCAAGCAACCATGTGATCCTCA
65269807 TATACTTCCT
Statistics
Matches: 113, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
41 112 0.99
42 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.21
Consensus pattern (41 bp):
CGGTGGATCCACGATCGTCAAGCAACCATGTGATCCTCAAT
Found at i:65270100 original size:27 final size:27
Alignment explanation
Indices: 65270065--65270131 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
65270055 AGGGGTATGC
*
65270065 TGATCATTTTATACTACAAGGGTATTT
1 TGATAATTTTATACTACAAGGGTATTT
* *
65270092 T-AGTAATTTTACACTATAAGGGTATTT
1 TGA-TAATTTTATACTACAAGGGTATTT
65270119 TGATAATTTTATA
1 TGATAATTTTATA
65270132 AATTGGGGGG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
26 1 0.03
27 32 0.94
28 1 0.03
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.46
Consensus pattern (27 bp):
TGATAATTTTATACTACAAGGGTATTT
Found at i:65270146 original size:28 final size:27
Alignment explanation
Indices: 65270111--65270399 Score: 203
Period size: 27 Copynumber: 10.7 Consensus size: 27
65270101 TACACTATAA
*
65270111 GGGTATTTTGATAATTTTATAAATTGGG
1 GGGTATTTTGATAATTTTACAAATT-GG
* * *
65270139 GGGTATTTCGATAATTTTACAAATCGA
1 GGGTATTTTGATAATTTTACAAATTGG
* *
65270166 GGGTA-TTTCAGTAATTTTACAAATTAG
1 GGGTATTTTGA-TAATTTTACAAATTGG
* ***
65270193 GGGTATTTTGATAATTCTAC-AATACAA
1 GGGTATTTTGATAATTTTACAAAT-TGG
* *
65270220 GGGTATTTT-AAAATTTTAACAAATCGG
1 GGGTATTTTGATAATTTT-ACAAATTGG
* **
65270247 GGATATTTCAATAATTTTACAAATTGG
1 GGGTATTTTGATAATTTTACAAATTGG
* * * * ***
65270274 GGGTATTTCGGTAATTCTAC-ACTACAA
1 GGGTATTTTGATAATTTTACAAAT-TGG
*
65270301 GGGTATTTTGATAATTTTACAAATTAG
1 GGGTATTTTGATAATTTTACAAATTGG
* * * *
65270328 TGGTATTTCGATAATTTTACAAACTAG
1 GGGTATTTTGATAATTTTACAAATTGG
* * *
65270355 GGGTATTTT-AGTAATTTTACTAATCGA
1 GGGTATTTTGA-TAATTTTACAAATTGG
65270382 GGGTATTTTCG-TAATTTT
1 GGGTATTTT-GATAATTTT
65270400 TTAAACTAAG
Statistics
Matches: 205, Mismatches: 45, Indels: 23
0.75 0.16 0.08
Matches are distributed among these distances:
26 15 0.07
27 152 0.74
28 38 0.19
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGATAATTTTACAAATTGG
Found at i:65270180 original size:27 final size:27
Alignment explanation
Indices: 65270083--65270424 Score: 183
Period size: 27 Copynumber: 12.6 Consensus size: 27
65270073 TTATACTACA
* * *
65270083 AGGGTATTTTAGTAATTTTACACTAT-A
1 AGGGTATTTCAGTAATTTTACA-AATCG
* * *
65270110 AGGGTATTT-TGATAATTTTATAAATTGG
1 AGGGTATTTCAG-TAATTTTACAAA-TCG
*
65270138 GGGGTATTTC-GATAATTTTACAAATCG
1 AGGGTATTTCAG-TAATTTTACAAATCG
*
65270165 AGGGTATTTCAGTAATTTTACAAAT-T
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
65270191 AGGGGTATTT-TGATAATTCTAC-AATACA
1 A-GGGTATTTCAG-TAATTTTACAAAT-CG
* *
65270219 AGGGTATTTTA-AAATTTTAACAAATCG
1 AGGGTATTTCAGTAATTTT-ACAAATCG
* *
65270246 -GGGATATTTCAATAATTTTACAAATTG
1 AGGG-TATTTCAGTAATTTTACAAATCG
* * * * *
65270273 GGGGTATTTCGGTAATTCTAC-ACTACA
1 AGGGTATTTCAGTAATTTTACAAAT-CG
* *
65270300 AGGGTATTT-TGATAATTTTACAAAT-T
1 AGGGTATTTCAG-TAATTTTACAAATCG
*
65270326 AGTGGTATTTC-GATAATTTTACAAA-CT
1 AG-GGTATTTCAG-TAATTTTACAAATCG
* *
65270353 AGGGGTATTTTAGTAATTTTACTAATCG
1 A-GGGTATTTCAGTAATTTTACAAATCG
** *
65270381 AGGGTATTTTC-GTAATTTTTTAAA-CTA
1 AGGGTA-TTTCAGTAATTTTACAAATC-G
65270408 AGGGTATTTCAGTAATT
1 AGGGTATTTCAGTAATT
65270425 CTACCCTACA
Statistics
Matches: 250, Mismatches: 38, Indels: 54
0.73 0.11 0.16
Matches are distributed among these distances:
26 25 0.10
27 181 0.72
28 44 0.18
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.41
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:65270223 original size:54 final size:54
Alignment explanation
Indices: 65270084--65270450 Score: 211
Period size: 54 Copynumber: 6.8 Consensus size: 54
65270074 TATACTACAA
* * * * *
65270084 GGGTATTTT-AGTAATTTTACACTATAAGGGTATTT-TGATAATTTTATAAATTGGG
1 GGGTATTTTGA-TAATTTTACAATACAAGGGTATTTCAG-TAATTTTACAAATT-AG
* *
65270139 GGGTATTTCGATAATTTTACAA-ATCGAGGGTATTTCAGTAATTTTACAAATTAG
1 GGGTATTTTGATAATTTTACAATA-CAAGGGTATTTCAGTAATTTTACAAATTAG
* * * *
65270193 GGGTATTTTGATAATTCTACAATACAAGGGTATTTTA-AAATTTTAACAAA-TCG
1 GGGTATTTTGATAATTTTACAATACAAGGGTATTTCAGTAATTTT-ACAAATTAG
** *** * * * * *
65270246 GGGATATTTCAATAATTTTACAA-ATTGGGGGTATTTCGGTAATTCTAC-ACTACAA
1 GGG-TATTTTGATAATTTTACAATA-CAAGGGTATTTCAGTAATTTTACAAAT-TAG
** *
65270301 GGGTATTTTGATAATTTTACAA-ATTAGTGGTATTTC-GATAATTTTACAAACTAG
1 GGGTATTTTGATAATTTTACAATACAAG-GGTATTTCAG-TAATTTTACAAATTAG
* ** * *
65270355 GGGTATTTT-AGTAATTTTACTAAT-CGAGGGTATTTTC-GTAATTTTTTAAACTAA
1 GGGTATTTTGA-TAATTTTAC-AATACAAGGGTA-TTTCAGTAATTTTACAAATTAG
* * ** *
65270409 GGGTA-TTTCAGTAATTCTACCCTACAAGGGTATTTCAATAAT
1 GGGTATTTTGA-TAATTTTACAATACAAGGGTATTTCAGTAAT
65270451 ACTAGCCTAC
Statistics
Matches: 246, Mismatches: 46, Indels: 41
0.74 0.14 0.12
Matches are distributed among these distances:
53 25 0.10
54 160 0.65
55 59 0.24
56 2 0.01
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGATAATTTTACAATACAAGGGTATTTCAGTAATTTTACAAATTAG
Found at i:65270262 original size:81 final size:80
Alignment explanation
Indices: 65270139--65270390 Score: 303
Period size: 81 Copynumber: 3.1 Consensus size: 80
65270129 ATAAATTGGG
* * *
65270139 GGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATTAGGGGTATTTTGA
1 GGGTATTTTGAAAATTTTACAAATCG-GGGTATTTCAATAATTTTACAAATTAGGGGTATTTTGA
65270204 TAATTCTACAATACAA
65 TAATTCTACAATACAA
* *
65270220 GGGTATTTT-AAAATTTTAACAAATCGGGGATATTTCAATAATTTTACAAATTGGGGGTATTTCG
1 GGGTATTTTGAAAATTTT-ACAAATCGGGG-TATTTCAATAATTTTACAAATTAGGGGTATTTTG
* *
65270284 GTAATTCTACACTACAA
64 ATAATTCTACAATACAA
* * * * *
65270301 GGGTATTTTGATAATTTTACAAATTAGTGGTATTTCGATAATTTTACAAACTAGGGGTATTTT-A
1 GGGTATTTTGAAAATTTTACAAA-TCGGGGTATTTCAATAATTTTACAAATTAGGGGTATTTTGA
* *
65270365 GTAATTTTACTAAT-CGA
65 -TAATTCTAC-AATACAA
65270382 GGGTATTTT
1 GGGTATTTT
65270391 CGTAATTTTT
Statistics
Matches: 147, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
80 10 0.07
81 124 0.84
82 13 0.09
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (80 bp):
GGGTATTTTGAAAATTTTACAAATCGGGGTATTTCAATAATTTTACAAATTAGGGGTATTTTGAT
AATTCTACAATACAA
Found at i:65270397 original size:81 final size:78
Alignment explanation
Indices: 65270139--65270424 Score: 299
Period size: 81 Copynumber: 3.5 Consensus size: 78
65270129 ATAAATTGGG
* *
65270139 GGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATTAGGGGTATTTTGA
1 GGGTATTTTGATAATTTTACAAAT-TAGGGTATTTCA-TAATTTTACAAATTAGGGGTATTTTG-
65270204 TAATTCTACAATACAA
63 TAATTCTACAATACAA
* ** * *
65270220 GGGTATTTT-AAAATTTTAACAAATCGGGGATATTTCAATAATTTTACAAATTGGGGGTATTTCG
1 GGGTATTTTGATAATTTT-ACAAATTAGGG-TATTTC-ATAATTTTACAAATTAGGGGTATTT-T
*
65270284 GTAATTCTACACTACAA
62 GTAATTCTACAATACAA
*
65270301 GGGTATTTTGATAATTTTACAAATTAGTGGTATTTCGATAATTTTACAAACTAGGGGTATTTTAG
1 GGGTATTTTGATAATTTTACAAATTAG-GGTATTTC-ATAATTTTACAAATTAGGGGTATTTT-G
* *
65270366 TAATTTTACTAAT-CGA
63 TAATTCTAC-AATACAA
** *
65270382 GGGTATTTTCG-TAATTTTTTAAACTAAGGGTATTTCAGTAATT
1 GGGTATTTT-GATAATTTTACAAA-TTAGGGTATTTCA-TAATT
65270425 CTACCCTACA
Statistics
Matches: 174, Mismatches: 20, Indels: 22
0.81 0.09 0.10
Matches are distributed among these distances:
80 11 0.06
81 146 0.84
82 17 0.10
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.41
Consensus pattern (78 bp):
GGGTATTTTGATAATTTTACAAATTAGGGTATTTCATAATTTTACAAATTAGGGGTATTTTGTAA
TTCTACAATACAA
Found at i:65270437 original size:27 final size:27
Alignment explanation
Indices: 65270407--65270462 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
65270397 TTTTTAAACT
* *
65270407 AAGGGTATTTCAGTAATTCTACCCTAC
1 AAGGGTATTTCAATAATACTACCCTAC
*
65270434 AAGGGTATTTCAATAATACTAGCCTAC
1 AAGGGTATTTCAATAATACTACCCTAC
65270461 AA
1 AA
65270463 ATATGAGATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.30
Consensus pattern (27 bp):
AAGGGTATTTCAATAATACTACCCTAC
Found at i:65273066 original size:13 final size:13
Alignment explanation
Indices: 65273048--65273072 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
65273038 GTAAGTGATT
65273048 TTGATGATTTTTC
1 TTGATGATTTTTC
65273061 TTGATGATTTTT
1 TTGATGATTTTT
65273073 TCACTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:65273937 original size:46 final size:46
Alignment explanation
Indices: 65273778--65273948 Score: 157
Period size: 46 Copynumber: 3.7 Consensus size: 46
65273768 TTTGTGCGCT
* * * *
65273778 AGTGTAAAACATGTTTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGAGCC
* * * * * ** *
65273824 AGTGTAAGACCATGTCTAGGACATGGCTTCGACATTGAGACCAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAGAGCC
*
65273872 AGTGCAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGAGCC
* *
65273918 AGTGTAAGACATGTTTGGGACATGTATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
65273949 TATGGGACGT
Statistics
Matches: 97, Mismatches: 24, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
46 50 0.52
47 26 0.27
48 20 0.21
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGAGCC
Found at i:65275761 original size:16 final size:16
Alignment explanation
Indices: 65275711--65275761 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 16
65275701 GTTTCAATTA
65275711 GGATTTAGCCTGGACT
1 GGATTTAGCCTGGACT
*
65275727 GGTAATCCTAG-CT-GACT
1 GG--AT-TTAGCCTGGACT
65275744 GGATTTAGCCTGGACT
1 GGATTTAGCCTGGACT
65275760 GG
1 GG
65275762 TAATCCAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 10
0.70 0.05 0.25
Matches are distributed among these distances:
14 3 0.11
15 4 0.14
16 8 0.29
17 6 0.21
18 4 0.14
19 3 0.11
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (16 bp):
GGATTTAGCCTGGACT
Found at i:65284927 original size:18 final size:18
Alignment explanation
Indices: 65284904--65284938 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
65284894 AAGACAATAA
65284904 CAAACAAAAACACATTTT
1 CAAACAAAAACACATTTT
**
65284922 CAAACAACCACACATTT
1 CAAACAAAAACACATTT
65284939 ATACAAGTCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.29, G:0.00, T:0.20
Consensus pattern (18 bp):
CAAACAAAAACACATTTT
Found at i:65289099 original size:52 final size:52
Alignment explanation
Indices: 65289042--65289146 Score: 210
Period size: 52 Copynumber: 2.0 Consensus size: 52
65289032 TATATTGTTA
65289042 TGATTTGTGATTGAATTGATATTGCATAAATTGTTATGATTGTGAATATGAG
1 TGATTTGTGATTGAATTGATATTGCATAAATTGTTATGATTGTGAATATGAG
65289094 TGATTTGTGATTGAATTGATATTGCATAAATTGTTATGATTGTGAATATGAG
1 TGATTTGTGATTGAATTGATATTGCATAAATTGTTATGATTGTGAATATGAG
65289146 T
1 T
65289147 ATGCATGTTG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.30, C:0.02, G:0.23, T:0.45
Consensus pattern (52 bp):
TGATTTGTGATTGAATTGATATTGCATAAATTGTTATGATTGTGAATATGAG
Found at i:65289298 original size:46 final size:46
Alignment explanation
Indices: 65289245--65289361 Score: 164
Period size: 46 Copynumber: 2.5 Consensus size: 46
65289235 GTGTGCTAGC
* *
65289245 GTAAGACATGTCTGGGACATGCATCGGCCAT-ATTATGAGAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCATGA-GACGAGAGCCAGT
** *
65289291 GTAAGACATGTCTGGGACATGCATCGGCTTTGAGACGAGAGCTAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCATGAGACGAGAGCCAGT
*
65289337 GTAAGACATGTCTGGTACATGCATC
1 GTAAGACATGTCTGGGACATGCATC
65289362 AGGCTCGAGA
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 63 0.98
47 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (46 bp):
GTAAGACATGTCTGGGACATGCATCGGCCATGAGACGAGAGCCAGT
Found at i:65291419 original size:27 final size:27
Alignment explanation
Indices: 65291387--65291444 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
65291377 ACCCCTTAAT
*
65291387 TGATAAAATGACTATTATGCCCCTTTG
1 TGATAAAATGACTATTATGCCCCTATG
*
65291414 TGATAAAATGACTGTTATGCCCCTATG
1 TGATAAAATGACTATTATGCCCCTATG
65291441 TGAT
1 TGAT
65291445 GTATGATTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.36
Consensus pattern (27 bp):
TGATAAAATGACTATTATGCCCCTATG
Found at i:65297670 original size:10 final size:10
Alignment explanation
Indices: 65297651--65297710 Score: 79
Period size: 10 Copynumber: 6.0 Consensus size: 10
65297641 TGAAATTCTA
65297651 AAAGATAAAT
1 AAAGATAAAT
65297661 ACAA-ATAAAT
1 A-AAGATAAAT
*
65297671 AAAGATAATT
1 AAAGATAAAT
65297681 AAAGATAAAT
1 AAAGATAAAT
65297691 AAAGATAAAT
1 AAAGATAAAT
65297701 GAAA-ATAAAT
1 -AAAGATAAAT
65297711 CCTAAAATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:65298517 original size:96 final size:97
Alignment explanation
Indices: 65298355--65298536 Score: 285
Period size: 96 Copynumber: 1.9 Consensus size: 97
65298345 ATTTAATTTA
* * * *
65298355 TTTATTTTTACTTAGGAATATATTGAACCTTTTGACGCAAAGAGAGATGATAGCCAAGCACCCCA
1 TTTATTTTTACTTAAGAACATATCGAACCTTTTGACGCAAAGAGAGATGACAGCCAAGCACCCCA
65298420 CCCCGGTTACTCAGCCCAACATACTCCTAATT
66 CCCCGGTTACTCAGCCCAACATACTCCTAATT
** * *
65298452 TTTATTTTT-CTTAAGAACATATCGAACCTTTTGACGTGAAGAGAGGTGACAGTCAAGCACCCCA
1 TTTATTTTTACTTAAGAACATATCGAACCTTTTGACGCAAAGAGAGATGACAGCCAAGCACCCCA
65298516 CCCCGGTTACTCAGCCCAACA
66 CCCCGGTTACTCAGCCCAACA
65298537 CATTCTTAAA
Statistics
Matches: 77, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
96 68 0.88
97 9 0.12
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (97 bp):
TTTATTTTTACTTAAGAACATATCGAACCTTTTGACGCAAAGAGAGATGACAGCCAAGCACCCCA
CCCCGGTTACTCAGCCCAACATACTCCTAATT
Found at i:65301140 original size:5 final size:5
Alignment explanation
Indices: 65301119--65301210 Score: 71
Period size: 5 Copynumber: 17.4 Consensus size: 5
65301109 TTATTAAAAT
* * *
65301119 AATAA AAT-A ATTAAA AATAA AACAA AATGA AATAA AATAA AATAA AATAAGA
1 AATAA AATAA AAT-AA AATAA AATAA AATAA AATAA AATAA AATAA AAT-A-A
*
65301171 AATAA AATAA TAATTAT AAT-A AATAA AATTAA AATTAA AA
1 AATAA AATAA -AA-TAA AATAA AATAA AA-TAA AA-TAA AA
65301211 ATTAAAGATT
Statistics
Matches: 71, Mismatches: 8, Indels: 15
0.76 0.09 0.16
Matches are distributed among these distances:
4 6 0.08
5 39 0.55
6 20 0.28
7 6 0.08
ACGTcount: A:0.73, C:0.01, G:0.02, T:0.24
Consensus pattern (5 bp):
AATAA
Found at i:65301194 original size:21 final size:20
Alignment explanation
Indices: 65301147--65301207 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 20
65301137 AAAACAAAAT
*
65301147 GAAATAAAATAAAATAAAATAA
1 GAAATAAAATAAAAT--TATAA
65301169 GAAATAAAATAATAATTATAA
1 GAAATAAAATAA-AATTATAA
*
65301190 TAAATAAAATTAAAATTA
1 GAAATAAAA-TAAAATTA
65301208 AAAATTAAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
21 17 0.49
22 15 0.43
23 3 0.09
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.26
Consensus pattern (20 bp):
GAAATAAAATAAAATTATAA
Found at i:65306408 original size:78 final size:78
Alignment explanation
Indices: 65306279--65306455 Score: 354
Period size: 78 Copynumber: 2.3 Consensus size: 78
65306269 GGTGCTAAAT
65306279 TAGGGTTTTCGTTAACCCTAGTGTTAAACACTTCTTCTGAGGAATCAACTTCTACTTTTTCGCCT
1 TAGGGTTTTCGTTAACCCTAGTGTTAAACACTTCTTCTGAGGAATCAACTTCTACTTTTTCGCCT
65306344 TCAAAAGTTTGAG
66 TCAAAAGTTTGAG
65306357 TAGGGTTTTCGTTAACCCTAGTGTTAAACACTTCTTCTGAGGAATCAACTTCTACTTTTTCGCCT
1 TAGGGTTTTCGTTAACCCTAGTGTTAAACACTTCTTCTGAGGAATCAACTTCTACTTTTTCGCCT
65306422 TCAAAAGTTTGAG
66 TCAAAAGTTTGAG
65306435 TAGGGTTTTCGTTAACCCTAG
1 TAGGGTTTTCGTTAACCCTAG
65306456 ACTCTACTTC
Statistics
Matches: 99, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 99 1.00
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (78 bp):
TAGGGTTTTCGTTAACCCTAGTGTTAAACACTTCTTCTGAGGAATCAACTTCTACTTTTTCGCCT
TCAAAAGTTTGAG
Done.