Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 194 of 235
Found at i:66031144 original size:53 final size:53
Alignment explanation
Indices: 66031064--66031168 Score: 156
Period size: 53 Copynumber: 2.0 Consensus size: 53
66031054 ATAAACTACG
* * * *
66031064 ATAAGGCAAATATCCCATGTAAGACCATGCCAAGGCATGGCAATAGTGAGTTC
1 ATAAGGCAAATATACCACGTAAGACCATGCCAAGACATGGCAATAGTAAGTTC
* *
66031117 ATAAGGCAAGTATACCACGTAAGACCATGTCAAGACATGGCAATAGTAAGTT
1 ATAAGGCAAATATACCACGTAAGACCATGCCAAGACATGGCAATAGTAAGTT
66031169 TAAAAAGGAA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 46 1.00
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.21
Consensus pattern (53 bp):
ATAAGGCAAATATACCACGTAAGACCATGCCAAGACATGGCAATAGTAAGTTC
Found at i:66033001 original size:46 final size:48
Alignment explanation
Indices: 66032913--66033036 Score: 146
Period size: 47 Copynumber: 2.6 Consensus size: 48
66032903 GGGTAAGGCA
***
66032913 CCGATGCCATGTCCCAAACATAGTCTTACACTGGTTTATGTCTCGAGG
1 CCGATGCCATGTCCCAAACATAGTCTTACACTGCACTATGTCTCGAGG
* *
66032961 CCGATG-CATGTCCTAAACAT-GTCTTACACTAGCACT-TGTCTCGATG
1 CCGATGCCATGTCCCAAACATAGTCTTACACT-GCACTATGTCTCGAGG
* * *
66033007 CCGATGCCATGTCCCATATATGGTCTTACA
1 CCGATGCCATGTCCCAAACATAGTCTTACA
66033037 TTGGCTCTCA
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
46 25 0.38
47 26 0.40
48 14 0.22
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (48 bp):
CCGATGCCATGTCCCAAACATAGTCTTACACTGCACTATGTCTCGAGG
Found at i:66040786 original size:40 final size:41
Alignment explanation
Indices: 66040751--66040980 Score: 353
Period size: 40 Copynumber: 5.7 Consensus size: 41
66040741 GGATATAGCC
*
66040751 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATA-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATTAGTA
** * *
66040791 GTTCGCACAAATGCCTTCGGGAATTAGCCCGGGTA-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATTAGTA
66040831 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATTAGTA
66040871 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATTAGTA
* *
66040911 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GAAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATTAGTA
*
66040951 ACTAGCACAAATGCCTTCGGGACTTAGCCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC
66040981 CGTTATCATC
Statistics
Matches: 177, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 3 0.02
40 174 0.98
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (41 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATTAGTA
Found at i:66042776 original size:12 final size:12
Alignment explanation
Indices: 66042759--66042785 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
66042749 ATGGAAATAT
66042759 GCTTCAGAGTTG
1 GCTTCAGAGTTG
66042771 GCTTCAGAGTTG
1 GCTTCAGAGTTG
66042783 GCT
1 GCT
66042786 CCAATAGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.19, G:0.33, T:0.33
Consensus pattern (12 bp):
GCTTCAGAGTTG
Found at i:66063653 original size:24 final size:25
Alignment explanation
Indices: 66063595--66063654 Score: 95
Period size: 25 Copynumber: 2.4 Consensus size: 25
66063585 ATAGTTAAGC
*
66063595 ATTATGAATGTTTCATAAATTATAT
1 ATTATGAATGTTTCATAAATTACAT
*
66063620 TTTATGAATGTTTCATAAA-TACAT
1 ATTATGAATGTTTCATAAATTACAT
66063644 ATTATGAATGT
1 ATTATGAATGT
66063655 GATTTCCAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
24 14 0.44
25 18 0.56
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.47
Consensus pattern (25 bp):
ATTATGAATGTTTCATAAATTACAT
Found at i:66063941 original size:23 final size:23
Alignment explanation
Indices: 66063898--66063941 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
66063888 ATAAAGTAGA
**
66063898 AGACATATTCAAACTTGAAAGCT
1 AGACATATTCAAACTCAAAAGCT
*
66063921 AGACTTATTCAAACTCAAAAG
1 AGACATATTCAAACTCAAAAG
66063942 TTTATTTTAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.45, C:0.18, G:0.11, T:0.25
Consensus pattern (23 bp):
AGACATATTCAAACTCAAAAGCT
Found at i:66064591 original size:3 final size:3
Alignment explanation
Indices: 66064583--66064612 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
66064573 CTTTTAATCC
*
66064583 TTA TTA TTA TTA CTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
66064613 AAAAGCCATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:66066603 original size:30 final size:31
Alignment explanation
Indices: 66066543--66066615 Score: 112
Period size: 31 Copynumber: 2.4 Consensus size: 31
66066533 CTAAGTTTCA
*
66066543 AAATTTCGGTGGTAAAAATAAAAAATTAACC
1 AAATTTTGGTGGTAAAAATAAAAAATTAACC
66066574 AAATTTTGGTGGTAAAAATAAAAAA-TAACC
1 AAATTTTGGTGGTAAAAATAAAAAATTAACC
**
66066604 AAGGTTTGGTGG
1 AAATTTTGGTGG
66066616 CATCGATTGT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 15 0.38
31 24 0.62
ACGTcount: A:0.47, C:0.07, G:0.19, T:0.27
Consensus pattern (31 bp):
AAATTTTGGTGGTAAAAATAAAAAATTAACC
Found at i:66069065 original size:23 final size:23
Alignment explanation
Indices: 66069032--66069080 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
66069022 CTTGATGAGA
*
66069032 TGATATACCTCATCCTGACGTGG
1 TGATATACCTCATCCTGACATGG
* *
66069055 TGATATGCCTCGTCCTGACATGG
1 TGATATACCTCATCCTGACATGG
66069078 TGA
1 TGA
66069081 CATGTATTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.31
Consensus pattern (23 bp):
TGATATACCTCATCCTGACATGG
Found at i:66072769 original size:48 final size:48
Alignment explanation
Indices: 66072705--66072971 Score: 252
Period size: 48 Copynumber: 5.6 Consensus size: 48
66072695 AAATTTGGGT
* * *
66072705 GATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCCAC
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
* * * * **
66072753 GATATGAGAGCTAGTGTAGGACCATGTTTGGAACATGGCATCGGTGA-
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
* * * * **
66072800 TATTGTGAGAGCCAGTGTAAGACCATGTCTAGGACATGACATCGATCAC
1 GA-TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
*
66072849 -ATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATT
1 GA-TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-C
* * * * * * *
66072897 GAGATGAGAGCTAGTCTGAGACCATGTTTGGGACATGGCATTGGCCTC
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
* * *
66072945 GACATGTGGGCCAGTGTAAGACCATGT
1 GATATGAGAGCCAGTGTAAGACCATGT
66072972 TTAGTATTCC
Statistics
Matches: 176, Mismatches: 38, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
47 3 0.02
48 171 0.97
49 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (48 bp):
GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
Found at i:66076666 original size:19 final size:19
Alignment explanation
Indices: 66076642--66076687 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
66076632 ATTTAGTACG
66076642 AGCTTACTAAGCTTATGAA
1 AGCTTACTAAGCTTATGAA
66076661 AGCTTACTAAGCTTATGAA
1 AGCTTACTAAGCTTATGAA
66076680 AGCTTACT
1 AGCTTACT
66076688 TTGTGTCTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (19 bp):
AGCTTACTAAGCTTATGAA
Found at i:66079346 original size:40 final size:41
Alignment explanation
Indices: 66079289--66079542 Score: 277
Period size: 40 Copynumber: 6.3 Consensus size: 41
66079279 CTAACGGGGT
* * * *
66079289 TAAGTCTCGAAGACATTTGTGCTAGTGATTAAT-TCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCAAGTTATTAATATCCGGGC
* * *
66079329 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCAAGTTATTAATATCCGGGC
* * **
66079369 TAAGTCCCGAAGGCTTTTGTGCGAGTTACAAAT-TCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCAAGTTATTAATATCCGGGC
* * *
66079409 TAAGCCCCAAAGGTATTTGTGCAAGTTATT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCAAGTTATTAATATCCGGGC
*
66079449 TAAGTCCTGAAGGCATTTGTGCAAGTTATT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCAAGTTATTAATATCCGGGC
* * ** *
66079489 TAAGTCCCGAAGGCATTTGTGCTAGTGA-CCATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGCAAGTTATTAATATCCGGGC
*
66079529 TAAGACCCGAAGGC
1 TAAGTCCCGAAGGC
66079543 CTTGTGCGAG
Statistics
Matches: 186, Mismatches: 26, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
39 2 0.01
40 184 0.99
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (41 bp):
TAAGTCCCGAAGGCATTTGTGCAAGTTATTAATATCCGGGC
Found at i:66079526 original size:120 final size:119
Alignment explanation
Indices: 66079303--66079578 Score: 326
Period size: 120 Copynumber: 2.3 Consensus size: 119
66079293 TCTCGAAGAC
* * * *
66079303 ATTTGTGCTAGTGATTA-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCTGG
1 ATTTGTGCAAGTGATTATA-TCCGGGCTAAGTCCTGAAGGCATTTGTGCAAGTTACTAATTCCGG
* * * *
66079367 GCTAAGTCCCGAAGGCTTTTGTGCGAGTTACAAATTCCGGGCTAAGCCCCAAAGG
65 GCTAAGTCCCGAAGGCATTTGTGCGAGTGACAAATTCCGGACTAAGACCCAAAGG
* *
66079422 TATTTGTGCAAGTTATTATATCCGGGCTAAGTCCTGAAGGCATTTGTGCAAGTTA-TTATATCCG
1 -ATTTGTGCAAGTGATTATATCCGGGCTAAGTCCTGAAGGCATTTGTGCAAGTTACTAAT-TCCG
* * *
66079486 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGACTAAGACCCGAAGG
64 GGCTAAGTCCCGAAGGCATTTGTGCGAGTGACAAAT-TCCGGACTAAGACCCAAAGG
** * * *
66079542 CCTTGTGCGAGTGGTTATATCC-GGCTAAATCCTGAAG
1 ATTTGTGCAAGTGATTATATCCGGGCTAAGTCCTGAAG
66079579 ATACTTGGGT
Statistics
Matches: 134, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
118 14 0.10
119 22 0.16
120 97 0.72
121 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (119 bp):
ATTTGTGCAAGTGATTATATCCGGGCTAAGTCCTGAAGGCATTTGTGCAAGTTACTAATTCCGGG
CTAAGTCCCGAAGGCATTTGTGCGAGTGACAAATTCCGGACTAAGACCCAAAGG
Found at i:66084810 original size:14 final size:13
Alignment explanation
Indices: 66084782--66084818 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
66084772 ATCCTGGGAT
66084782 ATTAA-AACAATA
1 ATTAAGAACAATA
66084794 ATTAAGAACACATA
1 ATTAAGAACA-ATA
66084808 ATTAAGAACAA
1 ATTAAGAACAA
66084819 GTTAAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
14 13 0.57
ACGTcount: A:0.62, C:0.11, G:0.05, T:0.22
Consensus pattern (13 bp):
ATTAAGAACAATA
Found at i:66101445 original size:29 final size:29
Alignment explanation
Indices: 66101385--66101489 Score: 151
Period size: 29 Copynumber: 3.7 Consensus size: 29
66101375 CTGACTGATT
* * *
66101385 TCGCACACATAGTG-CTCGATTA-AAGAAC
1 TCGCACACATAGTGCCTCAATTACCA-ATC
66101413 TCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCCTCAATTACCAATC
66101442 TCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCCTCAATTACCAATC
*
66101471 TCGCACACACAGTGCCTCA
1 TCGCACACATAGTGCCTCA
66101490 TAATTCCAGC
Statistics
Matches: 71, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
28 14 0.20
29 56 0.79
30 1 0.01
ACGTcount: A:0.31, C:0.33, G:0.13, T:0.22
Consensus pattern (29 bp):
TCGCACACATAGTGCCTCAATTACCAATC
Found at i:66101567 original size:40 final size:40
Alignment explanation
Indices: 66101495--66101616 Score: 176
Period size: 40 Copynumber: 3.1 Consensus size: 40
66101485 CCTCATAATT
* * *
66101495 CCAGCACGAATGC-CTTCGAGG-TTTAGCTCGGATATATCA
1 CCAGCACGAATGCTCTTCG-GGACTTAGCCCGGATATAACA
*
66101534 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
*
66101574 CCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
66101614 CCA
1 CCA
66101617 AATCAATGCC
Statistics
Matches: 75, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
39 14 0.19
40 61 0.81
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
Found at i:66101749 original size:29 final size:29
Alignment explanation
Indices: 66101689--66101764 Score: 93
Period size: 29 Copynumber: 2.7 Consensus size: 29
66101679 CTGACTGATT
*
66101689 TCGCACACATAGTG-CTCGATTAAAGAAC
1 TCGCACACATAGTGCCTCAATTAAAGAAC
* *
66101717 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTGCCTCAATTA-AAGAAC
*
66101746 TCGCACACACAGTGCCTCA
1 TCGCACACATAGTGCCTCA
66101765 TAATTCCAGC
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 14 0.33
29 27 0.64
30 1 0.02
ACGTcount: A:0.32, C:0.33, G:0.14, T:0.21
Consensus pattern (29 bp):
TCGCACACATAGTGCCTCAATTAAAGAAC
Found at i:66101842 original size:40 final size:40
Alignment explanation
Indices: 66101770--66101886 Score: 166
Period size: 40 Copynumber: 3.0 Consensus size: 40
66101760 CCTCATAATT
* *
66101770 CCAGCACGAATGC-CTTCGAGG-TTTAGCTCGGATATATCA
1 CCAGCACGAATGCTCTTCG-GGACTTAGCCCGGATATATCA
* *
66101809 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
*
66101849 CCAGCACGAATGCTCTTCGGGACTTAGCCCAGATATAT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
66101887 AACTCTCAAT
Statistics
Matches: 69, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
39 14 0.20
40 55 0.80
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
Found at i:66103448 original size:25 final size:25
Alignment explanation
Indices: 66103374--66103448 Score: 59
Period size: 25 Copynumber: 3.1 Consensus size: 25
66103364 GCCACAATAT
* *
66103374 ATATATACACTTTCACGTTCATCAC
1 ATATATACACATTCACATTCATCAC
** * *
66103399 AT-T-GGC-CATTCAGCCTT-ATCTC
1 ATATATACACATTCA-CATTCATCAC
66103421 ATATATACACATTCACATTCATCAC
1 ATATATACACATTCACATTCATCAC
66103446 ATA
1 ATA
66103449 AAATCCTGAA
Statistics
Matches: 36, Mismatches: 9, Indels: 10
0.65 0.16 0.18
Matches are distributed among these distances:
22 11 0.31
23 5 0.14
24 5 0.14
25 15 0.42
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (25 bp):
ATATATACACATTCACATTCATCAC
Found at i:66113388 original size:39 final size:40
Alignment explanation
Indices: 66113287--66113510 Score: 266
Period size: 40 Copynumber: 5.7 Consensus size: 40
66113277 TTGAATGATG
* *
66113287 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
66113326 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
66113367 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
66113406 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
66113445 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
66113484 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
66113511 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 12, Indels: 16
0.85 0.06 0.08
Matches are distributed among these distances:
39 75 0.46
40 76 0.46
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:66113474 original size:79 final size:80
Alignment explanation
Indices: 66113287--66113510 Score: 287
Period size: 79 Copynumber: 2.8 Consensus size: 80
66113277 TTGAATGATG
* * * *
66113287 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTATATCCGGGCTAAGACCCGAAGGCATT
*
66113351 TGTGCGAGATACTAAT
65 TGTGCGAGATACTAAA
66113367 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTATA-TCCGGGCTAAGACCCGAAGGCAT
*
66113428 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
* * * * *
66113445 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTATATCCGGGCTAAGACCCGAAGGCATTT
66113510 G
66 G
66113511 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
78 36 0.28
79 56 0.44
80 35 0.28
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:66113532 original size:79 final size:79
Alignment explanation
Indices: 66113287--66113543 Score: 217
Period size: 79 Copynumber: 3.3 Consensus size: 79
66113277 TTGAATGATG
* * * * *
66113287 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
66113349 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
66113367 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
66113431 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
66113445 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
66113508 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
66113525 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
66113544 TACGTGATTT
Statistics
Matches: 153, Mismatches: 15, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
77 1 0.01
78 37 0.24
79 67 0.44
80 47 0.31
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:66121073 original size:59 final size:59
Alignment explanation
Indices: 66120967--66121083 Score: 162
Period size: 59 Copynumber: 2.0 Consensus size: 59
66120957 GAATAAGTTG
* * *
66120967 CAAAATTTGCATTCTAGAAGTTTTTAGTATAAAATTGCATTGAAATATTCATTAGGAGC
1 CAAAACTTGCATTCTAGAAGTTTTTAGTATAAAATTGCATTGAAATATTAATGAGGAGC
* * ** *
66121026 CAAAACTTGCATTCTAGGAGTTTTTAGTATGAAATTGTTTTGGAATATTAATGAGGAG
1 CAAAACTTGCATTCTAGAAGTTTTTAGTATAAAATTGCATTGAAATATTAATGAGGAG
66121084 GTCTTAAATA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
59 50 1.00
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.38
Consensus pattern (59 bp):
CAAAACTTGCATTCTAGAAGTTTTTAGTATAAAATTGCATTGAAATATTAATGAGGAGC
Found at i:66122185 original size:46 final size:46
Alignment explanation
Indices: 66122135--66122400 Score: 208
Period size: 46 Copynumber: 5.7 Consensus size: 46
66122125 TGGTTGAGCA
*
66122135 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * **
66122181 TCCGAACTCGTTGAGTTGAGTTCGAG-T---TTGT-GAAACGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AA-T--G
* *
66122226 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * * *
66122274 TCTGAACTCGTTGAGTTGCGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
66122319 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
66122367 CCCGAGCTCGTTGAGTTGATTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
66122401 GGGGCGGGTT
Statistics
Matches: 171, Mismatches: 29, Indels: 40
0.71 0.12 0.17
Matches are distributed among these distances:
41 4 0.02
42 7 0.04
43 5 0.03
45 5 0.03
46 80 0.47
47 51 0.30
48 5 0.03
50 4 0.02
51 7 0.04
52 3 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:66122291 original size:93 final size:93
Alignment explanation
Indices: 66122132--66122395 Score: 413
Period size: 93 Copynumber: 2.8 Consensus size: 93
66122122 GGATGGTTGA
*
66122132 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
*
66122197 TGAGTTCGAGTTTGTGAAACGTAACTAG
66 TGAGTTCGAGTTCGTGAAACGTAACTAG
* * *
66122225 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
* * *
66122290 TGCGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTTCGAGTTCGTGAAACGTAACTAG
* * *
66122318 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
66122383 TGA-TTCTGAGTTC
66 TGAGTTC-GAGTTC
66122396 ACTTAGGGGC
Statistics
Matches: 154, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
92 2 0.01
93 152 0.99
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTTCGAGTTCGTGAAACGTAACTAG
Found at i:66122349 original size:47 final size:47
Alignment explanation
Indices: 66122181--66122349 Score: 184
Period size: 47 Copynumber: 3.6 Consensus size: 47
66122171 GATGCGAATG
* * *
66122181 TCCGAACTCGTTGAGTTGAGTTCGAGTTTGTGAAACGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
* * * * * *
66122228 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAA--ATG--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCA
* *
66122274 TCTGAACTCGTTGAGTTGCGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
66122321 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
66122350 ACTTATGGAT
Statistics
Matches: 96, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
43 5 0.05
45 4 0.04
46 26 0.27
47 53 0.55
48 4 0.04
50 4 0.04
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
Found at i:66131958 original size:132 final size:132
Alignment explanation
Indices: 66131721--66131984 Score: 519
Period size: 132 Copynumber: 2.0 Consensus size: 132
66131711 TGGTTAATTT
66131721 ATGGTGAATTTCCAAAATCAGAACAGGGGATCCAGAAAACGTTCTGGCCCTGTTTCACGAAAACT
1 ATGGTGAATTTCCAAAATCAGAACAGGGGATCCAGAAAACGTTCTGGCCCTGTTTCACGAAAACT
66131786 TAAACATCTCATAACATACGGCTCATATGGTCATTTCGTTTCTTTCATATGAAAATAGACTCATC
66 TAAACATCTCATAACATACGGCTCATATGGTCATTTCGTTTCTTTCATATGAAAATAGACTCATC
66131851 AA
131 AA
*
66131853 ATGGTGAATTTCCAAAATCAGAACAGGGGATCCAGAAAACGTTCTGGCCCTGTTTCACGAAATCT
1 ATGGTGAATTTCCAAAATCAGAACAGGGGATCCAGAAAACGTTCTGGCCCTGTTTCACGAAAACT
66131918 TAAACATCTCATAACATACGGCTCATATGGTCATTTCGTTTCTTTCATATGAAAATAGACTCATC
66 TAAACATCTCATAACATACGGCTCATATGGTCATTTCGTTTCTTTCATATGAAAATAGACTCATC
66131983 AA
131 AA
66131985 GATTCGATTA
Statistics
Matches: 131, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
132 131 1.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (132 bp):
ATGGTGAATTTCCAAAATCAGAACAGGGGATCCAGAAAACGTTCTGGCCCTGTTTCACGAAAACT
TAAACATCTCATAACATACGGCTCATATGGTCATTTCGTTTCTTTCATATGAAAATAGACTCATC
AA
Found at i:66133036 original size:40 final size:40
Alignment explanation
Indices: 66132824--66133029 Score: 308
Period size: 40 Copynumber: 5.2 Consensus size: 40
66132814 AACCCAAGTA
* * *
66132824 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
66132863 CCTTCGGGACTTAGCCCGGATATAGTAACTAGTACAGATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
66132903 CCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATT
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
66132943 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
66132983 CCTTCGGGACTTAGCCCGAATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
66133023 CCTTCGG
1 CCTTCGG
66133030 ATCTTAGTCC
Statistics
Matches: 153, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 13 0.08
40 140 0.92
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:66134409 original size:13 final size:13
Alignment explanation
Indices: 66134391--66134416 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
66134381 ATTTTTATTT
66134391 TTAACATAAAATA
1 TTAACATAAAATA
66134404 TTAACATAAAATA
1 TTAACATAAAATA
66134417 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:66139211 original size:12 final size:12
Alignment explanation
Indices: 66139194--66139220 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
66139184 ATTCCGAAGT
66139194 ATATATATATAC
1 ATATATATATAC
66139206 ATATATATATAC
1 ATATATATATAC
66139218 ATA
1 ATA
66139221 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:66139734 original size:27 final size:27
Alignment explanation
Indices: 66139703--66139853 Score: 167
Period size: 27 Copynumber: 5.6 Consensus size: 27
66139693 TAAATTTTAC
*
66139703 AGCACTAAGTGTGCGATTTCACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * ** * *
66139730 TGCACTAAGTGTACGAAATGACCATGC
1 AGCACTAAGTGTGCGATTTGACTATGT
*
66139757 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
66139785 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66139812 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
66139839 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
66139854 GACTCAATAT
Statistics
Matches: 103, Mismatches: 20, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
27 81 0.79
28 22 0.21
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:66139793 original size:55 final size:55
Alignment explanation
Indices: 66139702--66139850 Score: 167
Period size: 55 Copynumber: 2.7 Consensus size: 55
66139692 TTAAATTTTA
* * *
66139702 CAGCACTAAGTGTGCGA-TTTCACTATGTTGCACTAAGTGTACGAAATGACCATG
1 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTACGAAATGACCACG
* * ** **
66139756 CGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG
1 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTACGAAATGACCACG
* * * *
66139811 TAGCACTAAGTGTGCGAG-TTGATTATATAGCACTGAGTGT
1 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGT
66139851 GCGGACTCAA
Statistics
Matches: 80, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
54 35 0.44
55 45 0.56
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (55 bp):
CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTACGAAATGACCACG
Found at i:66141590 original size:56 final size:56
Alignment explanation
Indices: 66141504--66141615 Score: 215
Period size: 56 Copynumber: 2.0 Consensus size: 56
66141494 TAAATCAAAT
66141504 TATTACGATTTTAAAAGAGATCTTATTTCTAAATTCATTCAAACTCTTGACATTAA
1 TATTACGATTTTAAAAGAGATCTTATTTCTAAATTCATTCAAACTCTTGACATTAA
*
66141560 TATTACGATTTTAAAAGAGATCTTATTTCTAAATTCATTCTAACTCTTGACATTAA
1 TATTACGATTTTAAAAGAGATCTTATTTCTAAATTCATTCAAACTCTTGACATTAA
66141616 AACAAAATTA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.37, C:0.14, G:0.07, T:0.42
Consensus pattern (56 bp):
TATTACGATTTTAAAAGAGATCTTATTTCTAAATTCATTCAAACTCTTGACATTAA
Found at i:66146386 original size:43 final size:43
Alignment explanation
Indices: 66146338--66146432 Score: 106
Period size: 43 Copynumber: 2.2 Consensus size: 43
66146328 TCTCAGATAG
*
66146338 GGTCTTACACAAAATCAT-ATA-ATGATGCCAATGTGCC-AGACAT
1 GGTCTTACACAAAATCATAATACA--ATGCCAATGT-CCTAAACAT
* **
66146381 TGTCTTACACGTAATCATAATACAATGCCAATGTCCTAAACAT
1 GGTCTTACACAAAATCATAATACAATGCCAATGTCCTAAACAT
66146424 GGTCTTACA
1 GGTCTTACA
66146433 TGTAATCACA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
42 2 0.05
43 38 0.86
44 3 0.07
45 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (43 bp):
GGTCTTACACAAAATCATAATACAATGCCAATGTCCTAAACAT
Found at i:66150103 original size:54 final size:54
Alignment explanation
Indices: 66150041--66150148 Score: 180
Period size: 54 Copynumber: 2.0 Consensus size: 54
66150031 AATAACTTAA
* * *
66150041 CCCACCCAGCCCTACACTCCACAGTTGTAGTATTGCTGCTCAGATATCAGTAAG
1 CCCACCCAGCCCTACACTCCACAGTTGCAGCATAGCTGCTCAGATATCAGTAAG
*
66150095 CCCACCCAGCCCTACCCTCCACAGTTGCAGCATAGCTGCTCAGATATCAGTAAG
1 CCCACCCAGCCCTACACTCCACAGTTGCAGCATAGCTGCTCAGATATCAGTAAG
66150149 TTGAGGCAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.26, C:0.36, G:0.17, T:0.21
Consensus pattern (54 bp):
CCCACCCAGCCCTACACTCCACAGTTGCAGCATAGCTGCTCAGATATCAGTAAG
Found at i:66155118 original size:29 final size:27
Alignment explanation
Indices: 66155032--66155122 Score: 83
Period size: 29 Copynumber: 3.2 Consensus size: 27
66155022 TACTTGTATC
* *
66155032 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATT-AGCCAAATCACATTCATA
* * *
66155060 TGACCCATTAGACCTAAATCACCTACATA
1 TGGCCCATTAG-CC-AAATCACATTCATA
*
66155089 TGGCCCATTAGGTCCAAATCACATTTATA
1 TGGCCCATTA-G-CCAAATCACATTCATA
66155118 TGGCC
1 TGGCC
66155123 TGTTAGGCCC
Statistics
Matches: 50, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
27 2 0.04
28 10 0.20
29 35 0.70
30 3 0.06
ACGTcount: A:0.32, C:0.29, G:0.12, T:0.27
Consensus pattern (27 bp):
TGGCCCATTAGCCAAATCACATTCATA
Found at i:66158367 original size:31 final size:31
Alignment explanation
Indices: 66158324--66158387 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
66158314 CCTTTTCATA
*
66158324 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCAAAGCCT
* **
66158355 TTTCATATTTCATATTACTGGGCCAAAGCCT
1 TTTCATAATTCATAACACTGGGCCAAAGCCT
66158386 TT
1 TT
66158388 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCAAAGCCT
Found at i:66158627 original size:24 final size:24
Alignment explanation
Indices: 66158580--66158987 Score: 741
Period size: 24 Copynumber: 17.0 Consensus size: 24
66158570 GCTTTATCAT
*
66158580 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
66158605 ATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
*
66158630 ATAACGGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66158653 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66158677 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66158701 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66158725 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66158749 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66158773 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66158797 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66158821 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66158845 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66158869 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66158893 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66158917 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66158941 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66158965 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
66158988 TGCACTTCTT
Statistics
Matches: 375, Mismatches: 3, Indels: 11
0.96 0.01 0.03
Matches are distributed among these distances:
23 23 0.06
24 322 0.86
25 24 0.06
26 6 0.02
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:66159060 original size:9 final size:9
Alignment explanation
Indices: 66159046--66159102 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
66159036 ATCTTGTGTG
66159046 CATATCATA
1 CATATCATA
*
66159055 CATATCATGTG
1 CATATCA--TA
66159066 CATATCATA
1 CATATCATA
* *
66159075 CATGTCATGTG
1 CATATCA--TA
66159086 CATATCATA
1 CATATCATA
66159095 CATATCAT
1 CATATCAT
66159103 GTTTACACTA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:66159065 original size:20 final size:20
Alignment explanation
Indices: 66159042--66159104 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
66159032 GAACATCTTG
66159042 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
66159062 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
66159082 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
66159102 TGT
1 TGT
66159105 TTACACTAGG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:66165843 original size:31 final size:31
Alignment explanation
Indices: 66165800--66165863 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
66165790 CCTTTTCATA
66165800 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
66165831 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
66165862 TT
1 TT
66165864 ACTGTAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:66166103 original size:24 final size:24
Alignment explanation
Indices: 66166056--66166487 Score: 780
Period size: 24 Copynumber: 18.0 Consensus size: 24
66166046 GCTTTATCAT
*
66166056 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
66166081 ATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
*
66166106 ATAACGGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
66166129 ATAACTGGGGCATAACCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66166153 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66166177 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66166201 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66166225 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66166249 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66166273 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66166297 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66166321 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66166345 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66166369 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66166393 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66166417 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66166441 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66166465 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
66166488 TGCACTTCCT
Statistics
Matches: 397, Mismatches: 5, Indels: 11
0.96 0.01 0.03
Matches are distributed among these distances:
23 22 0.06
24 345 0.87
25 24 0.06
26 6 0.02
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:66166560 original size:9 final size:9
Alignment explanation
Indices: 66166546--66166622 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
66166536 ATCTCGTGTG
66166546 CATATCATA
1 CATATCATA
*
66166555 CATATCATGTG
1 CATATCA--TA
66166566 CATATCATA
1 CATATCATA
* *
66166575 CATGTCATGTG
1 CATATCA--TA
66166586 CATATCATA
1 CATATCATA
*
66166595 CATATCATGTG
1 CATATCA--TA
66166606 CATATCATA
1 CATATCATA
66166615 CATATCAT
1 CATATCAT
66166623 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:66166565 original size:20 final size:20
Alignment explanation
Indices: 66166542--66166624 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
66166532 GAACATCTCG
66166542 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
66166562 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
66166582 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
66166602 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
66166622 TGT
1 TGT
66166625 TTATCAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:66166571 original size:11 final size:11
Alignment explanation
Indices: 66166542--66166613 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
66166532 GAACATCTCG
66166542 TGTGCATATCA
1 TGTGCATATCA
*
66166553 --TACATATCA
1 TGTGCATATCA
66166562 TGTGCATATCA
1 TGTGCATATCA
* *
66166573 --TACATGTCA
1 TGTGCATATCA
66166582 TGTGCATATCA
1 TGTGCATATCA
*
66166593 --TACATATCA
1 TGTGCATATCA
66166602 TGTGCATATCA
1 TGTGCATATCA
66166613 T
1 T
66166614 ACATATCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:66166689 original size:25 final size:25
Alignment explanation
Indices: 66166661--66166708 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
66166651 ATATATAAAC
* * *
66166661 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
66166686 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
66166709 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:66170802 original size:29 final size:29
Alignment explanation
Indices: 66170763--66170841 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
66170753 CTTAATAATC
*
66170763 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
66170793 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
66170822 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
66170842 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:66173318 original size:31 final size:31
Alignment explanation
Indices: 66173277--66173339 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
66173267 ACGGGTTGGG
*
66173277 ACACGACCATGTGCTTCCATTTCGAATGTCC
1 ACACGACCATGTGCTTCCATTTCAAATGTCC
*
66173308 ACACGGCCATGTGCTTCCATTTCAAATGTCC
1 ACACGACCATGTGCTTCCATTTCAAATGTCC
66173339 A
1 A
66173340 TTTCAAATGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.29
Consensus pattern (31 bp):
ACACGACCATGTGCTTCCATTTCAAATGTCC
Found at i:66173341 original size:13 final size:13
Alignment explanation
Indices: 66173323--66173349 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
66173313 GCCATGTGCT
66173323 TCCATTTCAAATG
1 TCCATTTCAAATG
66173336 TCCATTTCAAATG
1 TCCATTTCAAATG
66173349 T
1 T
66173350 TTTGATATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (13 bp):
TCCATTTCAAATG
Found at i:66195567 original size:77 final size:75
Alignment explanation
Indices: 66195430--66195589 Score: 178
Period size: 77 Copynumber: 2.1 Consensus size: 75
66195420 TGATATACCA
* ** *
66195430 ATTTGGCTTCGGGCCATGCATATCGGACGAGTCGGCTTCGGGCCATGTTATTAGCACTTCGGGTG
1 ATTTGGCTTCGGGCCATGCATATCGGACGAGTCGGCTTCGAGCCATGAAAATAGCACTTC-GG-G
*
66195495 CGAGTTATAC-TG
64 CAAGTTAT-CTTG
* * ** * **
66195507 ATTTGGCTTCGGGGCATGCATATCGGATGTTTTGGCTTCGAGCCATGAAAATAGTTCTTCGGGCA
1 ATTTGGCTTCGGGCCATGCATATCGGACGAGTCGGCTTCGAGCCATGAAAATAGCACTTCGGGCA
66195572 AGTTATCTTG
66 AGTTATCTTG
66195582 ATTTGGCT
1 ATTTGGCT
66195590 ACGAGTCATG
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
74 1 0.01
75 18 0.26
76 2 0.03
77 49 0.70
ACGTcount: A:0.18, C:0.19, G:0.29, T:0.33
Consensus pattern (75 bp):
ATTTGGCTTCGGGCCATGCATATCGGACGAGTCGGCTTCGAGCCATGAAAATAGCACTTCGGGCA
AGTTATCTTG
Found at i:66203580 original size:8 final size:8
Alignment explanation
Indices: 66203567--66203599 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
66203557 AAATTAGCCC
66203567 TCACATTT
1 TCACATTT
66203575 TCACATTT
1 TCACATTT
66203583 TCACATTT
1 TCACATTT
*
66203591 TAACATTT
1 TCACATTT
66203599 T
1 T
66203600 AGTCCCTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.27, C:0.21, G:0.00, T:0.52
Consensus pattern (8 bp):
TCACATTT
Found at i:66210435 original size:24 final size:24
Alignment explanation
Indices: 66210408--66210574 Score: 221
Period size: 24 Copynumber: 7.0 Consensus size: 24
66210398 GAGGAAGTGA
66210408 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
66210432 AAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
66210456 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
* *
66210480 AAAAGGGCTTACGCCCCAGGTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
66210503 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
66210527 AAAAGGGCTTTTTCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
66210551 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
66210575 ATGATAAAGT
Statistics
Matches: 126, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
23 20 0.16
24 95 0.75
25 11 0.09
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:66210803 original size:31 final size:31
Alignment explanation
Indices: 66210768--66210831 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
66210758 CGTTTACAGC
*
66210768 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
66210799 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
66210830 AA
1 AA
66210832 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:66218404 original size:25 final size:25
Alignment explanation
Indices: 66218375--66218422 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
66218365 TTATAACATG
* * *
66218375 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
66218400 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
66218423 GTTTATGTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:66218525 original size:20 final size:20
Alignment explanation
Indices: 66218459--66218525 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
66218449 ATTTTGATAA
*
66218459 ACATGTTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
66218479 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
66218499 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
66218519 ACTTGAT
1 ACATGAT
66218526 GTATTCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:66218602 original size:24 final size:24
Alignment explanation
Indices: 66218575--66218703 Score: 188
Period size: 24 Copynumber: 5.4 Consensus size: 24
66218565 GAGGAAGTGA
*
66218575 AAAAGGGCTTATGCCCGAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
66218599 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
66218623 AAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
66218646 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
66218670 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
66218694 AAAAGAGGCT
1 AAAAG-GGCT
66218704 AGGCCTCTAG
Statistics
Matches: 96, Mismatches: 7, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
23 21 0.22
24 71 0.74
25 4 0.04
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:66218663 original size:47 final size:47
Alignment explanation
Indices: 66218574--66218696 Score: 192
Period size: 47 Copynumber: 2.6 Consensus size: 47
66218564 GGAGGAAGTG
* *
66218574 AAAAAGGGCTTATGCCCGAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
* *
66218622 CAAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
66218669 AAAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAAGGGCTTATGCCCCAGTTATTAAA
66218697 AGAGGCTAGG
Statistics
Matches: 68, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
47 47 0.69
48 21 0.31
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (47 bp):
AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:66218946 original size:31 final size:31
Alignment explanation
Indices: 66218911--66218974 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
66218901 CATTTACAGT
*
66218911 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* **
66218942 AAAGGCTTCTGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
66218973 AA
1 AA
66218975 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:66220990 original size:19 final size:19
Alignment explanation
Indices: 66220947--66220992 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
66220937 TTTTTCTCAG
*
66220947 TTTCTTTTATCATTTTTCC
1 TTTCTTTTATCATTTTTAC
* * *
66220966 TCTCTTTTCTCATTTTTAT
1 TTTCTTTTATCATTTTTAC
66220985 TTTCTTTT
1 TTTCTTTT
66220993 GTATTTTCAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.09, C:0.20, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTCTTTTATCATTTTTAC
Found at i:66221492 original size:40 final size:40
Alignment explanation
Indices: 66221448--66221671 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
66221438 AAGTGAATAT
* * * * **
66221448 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAA
66221488 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
66221528 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
66221568 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * **
66221608 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * *
66221647 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
66221672 TGAACGAGGA
Statistics
Matches: 171, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 35 0.20
40 136 0.80
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:66221546 original size:80 final size:80
Alignment explanation
Indices: 66221409--66221671 Score: 318
Period size: 80 Copynumber: 3.3 Consensus size: 80
66221399 TTGAATGCTG
* * * * *
66221409 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCC
*
66221471 TTTGTGCGAGATACTAAA
63 TTTGTGCGAGTTACTAAA
* * *
66221489 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
**
66221554 GTGCGAGTTGTTAAA
66 GTGCGAGTTACTAAA
* * *
66221569 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
66221633 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
66221648 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
66221672 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
79 35 0.22
80 116 0.73
81 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:66221623 original size:120 final size:120
Alignment explanation
Indices: 66221409--66221671 Score: 318
Period size: 120 Copynumber: 2.2 Consensus size: 120
66221399 TTGAATGCTG
* * *
66221409 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
* **
66221473 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * * *
66221529 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAG-TGAATAAATCCGGATTAAGAT-CCGAAGGCA
* ** * *
66221591 TTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
64 TTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
66221648 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
66221672 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
119 34 0.28
120 80 0.66
121 8 0.07
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:66229492 original size:40 final size:40
Alignment explanation
Indices: 66229461--66229551 Score: 148
Period size: 40 Copynumber: 2.3 Consensus size: 40
66229451 GGACTAAGAT
* *
66229461 CCGAAGGCATTTGTGCGAGTTATT-AATTCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTC
66229501 CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
66229541 CCGAAGGCATT
1 CCGAAGGCATT
66229552 GTATGAGTTA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
39 2 0.04
40 46 0.96
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
Found at i:66241357 original size:47 final size:45
Alignment explanation
Indices: 66241249--66241458 Score: 169
Period size: 47 Copynumber: 4.6 Consensus size: 45
66241239 GTGCTGATGT
* * *
66241249 ATGTCCCAGACATCTCTTACACTGGCACAACTCT-TA-GCCGATGC
1 ATGTCCCAGACATGTCTTACACTGGC-CATCTCTGTAGGCCAATGC
* * * *
66241293 GTGTTCCAGACACGTCTTACACTGGCTATCTCTGTCGAGGCCAATGC
1 ATGTCCCAGACATGTCTTACACTGGCCATCTCTGT--AGGCCAATGC
* * *
66241340 ATGTCCCAGACATGTCTTACTCTGG-CA-CTCATAATATGGCTGAA-GC
1 ATGTCCCAGACATGTCTTACACTGGCCATCTC-T-GTA-GGC-CAATGC
* * * * *
66241386 ATGTCCCAGACATGTCTTACACTAGCCCTCGTCTGGATGCCGATGCC
1 ATGTCCCAGACATGTCTTACACTGGCCATC-TCTGTAGGCCAATG-C
66241433 ATGTCCCAGACATGTCTTACACTGGC
1 ATGTCCCAGACATGTCTTACACTGGC
66241459 GTACAAATCA
Statistics
Matches: 130, Mismatches: 23, Indels: 23
0.74 0.13 0.13
Matches are distributed among these distances:
43 5 0.04
44 23 0.18
45 5 0.04
46 34 0.26
47 59 0.45
48 2 0.02
49 2 0.02
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (45 bp):
ATGTCCCAGACATGTCTTACACTGGCCATCTCTGTAGGCCAATGC
Found at i:66255988 original size:20 final size:20
Alignment explanation
Indices: 66255963--66256005 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
66255953 ATAGTAAAGT
66255963 CATCTCATAGCTTAACAAAA
1 CATCTCATAGCTTAACAAAA
*
66255983 CATCTCATTGCTTAACAAAA
1 CATCTCATAGCTTAACAAAA
66256003 CAT
1 CAT
66256006 GTACCACATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.42, C:0.26, G:0.05, T:0.28
Consensus pattern (20 bp):
CATCTCATAGCTTAACAAAA
Found at i:66257072 original size:56 final size:56
Alignment explanation
Indices: 66257005--66257169 Score: 215
Period size: 56 Copynumber: 2.9 Consensus size: 56
66256995 TACATGTAAT
* * *
66257005 CACATATCGATGCCAACGTACTAGACGTGGTCTTACTTGCACACATATATC-ATAAC
1 CACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGA-AAC
* * * * *
66257061 CACATATCGATGCCAATGTATTAAATGTGGTCTTACTCGCATACATATCTCGAAAT
1 CACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGAAAC
* * *
66257117 CACATATCGATGCCAAGGTATTAAACATGGTCTTACTCGTACACATATATCGA
1 CACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGA
66257170 TGCCATGGTC
Statistics
Matches: 94, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
56 93 0.99
57 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.29
Consensus pattern (56 bp):
CACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGAAAC
Found at i:66257521 original size:15 final size:15
Alignment explanation
Indices: 66257497--66257526 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
66257487 GTTCTTGATC
66257497 TAAAAATATTCAAAT
1 TAAAAATATTCAAAT
*
66257512 TAAAATTATTCAAAT
1 TAAAAATATTCAAAT
66257527 ATAATTTCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAAAATATTCAAAT
Found at i:66266923 original size:56 final size:56
Alignment explanation
Indices: 66266836--66266945 Score: 184
Period size: 56 Copynumber: 2.0 Consensus size: 56
66266826 TCTTTCATAT
* *
66266836 AATCACATATTGATGCCAACGTACTAGACATGGTCTTACTCGCACACATATATCGG
1 AATCACATATCGATGCCAACGTACTAAACATGGTCTTACTCGCACACATATATCGG
* *
66266892 AATCACATATCGATGCCAATGTATTAAACATGGTCTTACTCGCACACATATATC
1 AATCACATATCGATGCCAACGTACTAAACATGGTCTTACTCGCACACATATATC
66266946 AATGCCATGG
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.28
Consensus pattern (56 bp):
AATCACATATCGATGCCAACGTACTAAACATGGTCTTACTCGCACACATATATCGG
Found at i:66273307 original size:23 final size:22
Alignment explanation
Indices: 66273253--66273309 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 22
66273243 ACATTTATCT
*
66273253 CAAATATGCATTAATAAATGAA
1 CAAATATGCATTAATAAATCAA
66273275 -ATAATCATGCATTAATAAATCATA
1 CA-AAT-ATGCATTAATAAATCA-A
66273299 CAAATATGCAT
1 CAAATATGCAT
66273310 ATTAGGGGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
21 1 0.03
22 3 0.10
23 21 0.70
24 4 0.13
25 1 0.03
ACGTcount: A:0.51, C:0.12, G:0.07, T:0.30
Consensus pattern (22 bp):
CAAATATGCATTAATAAATCAA
Found at i:66281888 original size:47 final size:47
Alignment explanation
Indices: 66281778--66281992 Score: 204
Period size: 48 Copynumber: 4.5 Consensus size: 47
66281768 GATAAGCCAG
* * *
66281778 ACATGGTCTTACACTAGCTCTCAT-AC-ATCGGTGCTGATGCCATGCCCAA
1 ACATGGTCTTACACTGGCTCACATAACAAT--GT-C-GATGCCATGTCCAA
66281827 ACATGGTCTTACACTGGCTCACATAACAATGTCGATGCCATGTTCCAA
1 ACATGGTCTTACACTGGCTCACATAACAATGTCGATGCCATG-TCCAA
* * *** * *
66281875 ACATGGTC-GACACTGGCTCACGTATTGA-GGCTGATGCCATGTCCTAG
1 ACATGGTCTTACACTGGCTCACATAACAATGTC-GATGCCATGTCC-AA
* *
66281922 ACATGGTCTTACACTAGCTCTCATAACAATGTCGATGCCATGTTCCAA
1 ACATGGTCTTACACTGGCTCACATAACAATGTCGATGCCATG-TCCAA
* *
66281970 ACATGGTTTTACATTGGCTCACA
1 ACATGGTCTTACACTGGCTCACA
66281993 CATAACCCTA
Statistics
Matches: 135, Mismatches: 23, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
46 5 0.04
47 42 0.31
48 55 0.41
49 29 0.21
50 2 0.01
51 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (47 bp):
ACATGGTCTTACACTGGCTCACATAACAATGTCGATGCCATGTCCAA
Found at i:66292405 original size:49 final size:50
Alignment explanation
Indices: 66292336--66292581 Score: 262
Period size: 49 Copynumber: 4.9 Consensus size: 50
66292326 ATCTATTGTG
* * *
66292336 AGGTCACGTGTGTAGTACTAAGTGCAAGCTACTATGTGTACCGGATTATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
** ** *
66292386 -GGTCGTATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-TT
* * ** * *** **
66292436 CGATCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
* *
66292486 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
* * *
66292536 -GGTCACATGTGTAGTACTAAGTACAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATA
66292582 GCTTTAGCTA
Statistics
Matches: 162, Mismatches: 32, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
49 80 0.49
50 46 0.28
51 36 0.22
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
Found at i:66292533 original size:101 final size:98
Alignment explanation
Indices: 66292339--66292580 Score: 277
Period size: 100 Copynumber: 2.4 Consensus size: 98
66292329 TATTGTGAGG
* * * * **
66292339 TCACGTGTGTAGTACTAAGTGCAAGCTACTATGTGTACCGGATTATTGGTCGTATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATTGGTCACATGTGTAGTACT
*
66292404 AAGTGCAGGCTACTATGCATACCCGATAACTTCGA
66 AAGTGCAGGCTACTACGCATACCCGATAA-TT-GA
* ** * *
66292439 TCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATT-GGTCACATGTGTAGTAC
** * *
66292504 TAAGTGCAGGCTACTACGTGTACCGGATAATTGG
65 TAAGTGCAGGCTACTACGCATACCCGATAATTGA
* * * *
66292538 TCACATGTGTAGTACTAAGTACAGGCTACTATGCGTACCAGAT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
66292581 AGCTTTAGCT
Statistics
Matches: 118, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
99 37 0.31
100 41 0.35
101 40 0.34
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCATACCCGATAATTGA
Found at i:66292611 original size:150 final size:150
Alignment explanation
Indices: 66292336--66292614 Score: 391
Period size: 150 Copynumber: 1.9 Consensus size: 150
66292326 ATCTATTGTG
* * **
66292336 AGGTCACGTGTGTAGTACTAAGTGCAAGCTACTATGTGTACCGGATTATTGGTCGTATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCACATGTGTAGT
* * * * * *
66292401 ACTAAGTGCAGGCTACTATGCATACCCGATAACTTCGATCATGTGTGTAGTACTAAGTGCAGGCT
66 ACTAAGTACAGGCTACTATGCATACCAGATAACTTAGATCAAGTGTGTAGAAATAAGTGCAGGCT
66292466 ACTACGTGTATTAGATGGTT
131 ACTACGTGTATTAGATGGTT
*
66292486 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCACATGTGTAGT
* * * *
66292551 ACTAAGTACAGGCTACTATGCGTACCAGATAGCTTTAGCTACAAGTGT-TA-AAATATGTGCAGG
66 ACTAAGTACAGGCTACTATGCATACCAGATAAC-TTAGAT-CAAGTGTGTAGAAATAAGTGCAGG
66292614 C
129 C
66292615 AACTGAGTAT
Statistics
Matches: 112, Mismatches: 15, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
150 100 0.89
151 6 0.05
152 6 0.05
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (150 bp):
AGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCACATGTGTAGT
ACTAAGTACAGGCTACTATGCATACCAGATAACTTAGATCAAGTGTGTAGAAATAAGTGCAGGCT
ACTACGTGTATTAGATGGTT
Found at i:66296285 original size:55 final size:54
Alignment explanation
Indices: 66296190--66296339 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
66296180 CTACTTTGTT
* ** * *
66296190 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
66296244 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
66296299 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
66296340 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:66296302 original size:27 final size:27
Alignment explanation
Indices: 66296162--66296339 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
66296152 TAAATTGTAC
66296162 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
66296189 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
66296215 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
66296243 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
66296271 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
66296298 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
66296325 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
66296340 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:66296303 original size:82 final size:81
Alignment explanation
Indices: 66296163--66296318 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
66296153 AAATTGTACA
* * * *
66296163 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
66296228 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
66296244 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
66296307 TGTGCGAGTTGA
63 TGTGCGAATTGA
66296319 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:66300893 original size:47 final size:48
Alignment explanation
Indices: 66300824--66301000 Score: 180
Period size: 47 Copynumber: 3.6 Consensus size: 48
66300814 GGTGTAATGC
66300824 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-CAACAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCACAACAAGT
* * * * *
66300871 CGATGTCATGTCCCAGACATGGTTTTACACTGACT-ATCAAAATCAAGCC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCACAA-CAAG-T
* * * * **
66300920 CGACGCCATGTCCCAAACATGGTCTTACACTAGCTC-TCACATCTCCGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCACAAC-AAGT
*
66300968 GCCGATGCCATGTCCCAGACATGGTCTTTCACT
1 --CGATGCCATGTCCCAGACATGGTCTTACACT
66301001 AACACATCTC
Statistics
Matches: 104, Mismatches: 19, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
46 3 0.03
47 34 0.33
48 5 0.05
49 34 0.33
50 28 0.27
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCACAACAAGT
Found at i:66301089 original size:46 final size:46
Alignment explanation
Indices: 66300822--66301094 Score: 157
Period size: 46 Copynumber: 5.8 Consensus size: 46
66300812 AGGGTGTAAT
* * * *
66300822 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-T-CATCCAACAA
1 GCCGATG-CATGTCCCAAACATGGTCTTACACTAGCTTACAT-C-TCGA
* * * ** *
66300869 GTCGATGTCATGTCCCAGACATGGTTTTACACT-GAC-TATCAAAATCAA
1 GCCGATG-CATGTCCCAAACATGGTCTTACACTAG-CTTA-C-ATCTCGA
* *
66300917 GCCCGACGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATCTCCGT
1 G-CCGATG-CATGTCCCAAACATGGTCTTACACTAGCT-T-ACATCT-CGA
* * *
66300968 GCCGATGCCATGTCCCAGACATGGTCTTTCACTAAC--ACATCTCGTA
1 GCCGATG-CATGTCCCAAACATGGTCTTACACTAGCTTACATCTCG-A
* * ** * *
66301014 GCTGATGCATGTCCCACACA-CATCATACACTGGCTTACATCTCGA
1 GCCGATGCATGTCCCAAACATGGTCTTACACTAGCTTACATCTCGA
*
66301059 GGCCAATGCATGTCCCAAACAT-GTCTTACACTAGCT
1 -GCCGATGCATGTCCCAAACATGGTCTTACACTAGCT
66301095 CTCGTCTTAA
Statistics
Matches: 177, Mismatches: 34, Indels: 31
0.73 0.14 0.13
Matches are distributed among these distances:
44 8 0.05
45 15 0.08
46 49 0.28
47 32 0.18
48 4 0.02
49 29 0.16
50 35 0.20
51 4 0.02
52 1 0.01
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.25
Consensus pattern (46 bp):
GCCGATGCATGTCCCAAACATGGTCTTACACTAGCTTACATCTCGA
Found at i:66303524 original size:40 final size:40
Alignment explanation
Indices: 66303479--66303653 Score: 260
Period size: 40 Copynumber: 4.4 Consensus size: 40
66303469 TATGTGCACA
*
66303479 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGCTAAGTCCCGAAG
** *
66303519 GCATTCGTGAAGGTTATTATAATCGGGCTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGCTAAGTCCCGAAG
*
66303559 GCATTCGTACGGGTTATTATAACCGGGCTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGCTAAGTCCCGAAG
* * * *
66303599 GCATTCGTGCGAGTTATTATTACCGGGTTAAGTCCCAAAG
1 GCATTCGTGCGGGTTATTATAACCGGGCTAAGTCCCGAAG
*
66303639 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
66303654 GTTACATCCG
Statistics
Matches: 120, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 120 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGCTAAGTCCCGAAG
Found at i:66303677 original size:80 final size:80
Alignment explanation
Indices: 66303479--66303677 Score: 202
Period size: 80 Copynumber: 2.5 Consensus size: 80
66303469 TATGTGCACA
* * * ** * *
66303479 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGAAGGTTATTATAATCG
1 GCATTCGTACGGGTTATTACAACCGAGCCAAATCCCGAAGGCATTCGTGAAGGTTATTATAACCG
*
66303544 GGCTAAGTCCCGAAG
66 GGCTAAGTCCCAAAG
* * * * * *
66303559 GCATTCGTACGGGTTATTATAACCGGGCTAAGTCCCGAAGGCATTCGTG-CGAGTTATTATTACC
1 GCATTCGTACGGGTTATTACAACCGAGCCAAATCCCGAAGGCATTCGTGAAG-GTTATTATAACC
*
66303623 GGGTTAAGTCCCAAAG
65 GGGCTAAGTCCCAAAG
* * * * *
66303639 GCATTCGTGCTGGTTGTTACATCCGAGCCAAATTCCGAA
1 GCATTCGTACGGGTTATTACAACCGAGCCAAATCCCGAA
66303678 AGTATTTATG
Statistics
Matches: 102, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
79 1 0.01
80 101 0.99
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (80 bp):
GCATTCGTACGGGTTATTACAACCGAGCCAAATCCCGAAGGCATTCGTGAAGGTTATTATAACCG
GGCTAAGTCCCAAAG
Found at i:66319307 original size:13 final size:13
Alignment explanation
Indices: 66319286--66319326 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
66319276 GCTCGGCAGG
66319286 GACACGCCCGTGT
1 GACACGCCCGTGT
* *
66319299 GACATGCCCTTGT
1 GACACGCCCGTGT
*
66319312 GATACGCCCGTGT
1 GACACGCCCGTGT
66319325 GA
1 GA
66319327 ATCGTGCTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.17, C:0.32, G:0.29, T:0.22
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:66322006 original size:14 final size:14
Alignment explanation
Indices: 66321987--66322017 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
66321977 GATGGACGGA
66321987 GAGCGGATGCATTG
1 GAGCGGATGCATTG
66322001 GAGCGGATGCATTG
1 GAGCGGATGCATTG
66322015 GAG
1 GAG
66322018 GGGCTAGGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.23, C:0.13, G:0.45, T:0.19
Consensus pattern (14 bp):
GAGCGGATGCATTG
Found at i:66323753 original size:32 final size:32
Alignment explanation
Indices: 66323707--66323771 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
66323697 ATACTCCTCA
66323707 TTCCTGCTACCAATCTCATCAAAATAAGGTTT
1 TTCCTGCTACCAATCTCATCAAAATAAGGTTT
**
66323739 TTCCTGCTGTCAATCTCATCAAAATAAGGTTT
1 TTCCTGCTACCAATCTCATCAAAATAAGGTTT
66323771 T
1 T
66323772 AAATGGGTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.37
Consensus pattern (32 bp):
TTCCTGCTACCAATCTCATCAAAATAAGGTTT
Found at i:66325859 original size:27 final size:27
Alignment explanation
Indices: 66325829--66326006 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
66325819 ATATTGAGCC
* *
66325829 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
66325856 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
66325883 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
66325911 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
66325938 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
66325965 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
66325992 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66326007 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:66325941 original size:55 final size:54
Alignment explanation
Indices: 66325829--66326006 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
66325819 ATATTGAGCC
* * * * *
66325829 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
66325883 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
66325938 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
66325992 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66326007 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:66329653 original size:49 final size:49
Alignment explanation
Indices: 66329587--66329831 Score: 274
Period size: 49 Copynumber: 4.9 Consensus size: 49
66329577 TAGCTAAAGC
* * * *
66329587 TATCTGGTACGCATAGTAGCCTGTACTTAGTACTACACATGTGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
66329636 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* *** * * *
66329686 CATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACATGATCGAAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* ** ***
66329737 TATCGGGTATGCATAGTAGCCTGCACTTAGTACTACACATACGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
66329786 AATCCGGTACACATAGTAGCTTGCACTTAGTACTACACACGTGACC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
66329832 TCACAATAGA
Statistics
Matches: 162, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 80 0.49
50 46 0.28
51 36 0.22
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:66329773 original size:101 final size:98
Alignment explanation
Indices: 66329598--66329831 Score: 270
Period size: 100 Copynumber: 2.4 Consensus size: 98
66329588 ATCTGGTACG
* ** *
66329598 CATAGTAGCCTGTACTTAGTACTACACATGTGACCAATTATCCGGTACACGTAGTAGCCTGCACT
1 CATAGTAGCCTGCACTTAGTACTACACACATGACCAATTATCCGGTACACATAGTAGCCTGCACT
** * *
66329663 TAGTACTACACACGTGACCTAACCATCTAATACA
66 TAGTACTACACACACGACC-AACAATCCAATACA
* * * **
66329697 CGTAGTAGCCTGCACTTAGTACTACACACATGATCGAAGTTATCGGGTATGCATAGTAGCCTGCA
1 CATAGTAGCCTGCACTTAGTACTACACACATGA-CCAA-TTATCCGGTACACATAGTAGCCTGCA
* * **
66329762 CTTAGTACTACACATACGACCAATAATCCGGTACA
64 CTTAGTACTACACACACGACCAACAATCCAATACA
* *
66329797 CATAGTAGCTTGCACTTAGTACTACACACGTGACC
1 CATAGTAGCCTGCACTTAGTACTACACACATGACC
66329832 TCACAATAGA
Statistics
Matches: 112, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
99 30 0.27
100 42 0.38
101 40 0.36
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (98 bp):
CATAGTAGCCTGCACTTAGTACTACACACATGACCAATTATCCGGTACACATAGTAGCCTGCACT
TAGTACTACACACACGACCAACAATCCAATACA
Found at i:66340244 original size:48 final size:48
Alignment explanation
Indices: 66340179--66340390 Score: 195
Period size: 48 Copynumber: 4.4 Consensus size: 48
66340169 GGTTATGTGT
* *
66340179 GAGCCAATGTAAAACCATGTTTGGAACATGGCATCGA-CATTGTTATGA
1 GAGCCAGTGTAAGACCATGTTTGG-ACATGGCATCGACCATTGTTATGA
* * *** * *
66340227 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATC-AGCC-TCAATACGT
1 GAGCCAGTGTAAGACCATGT-TTGGACATGGCATCGA-CCATTGTTATGA
* *
66340275 GAGCCAGTGT-CGACCATGTTTGGAACATGGCATCGA-CATTGTTATGT
1 GAGCCAGTGTAAGACCATGTTTGG-ACATGGCATCGACCATTGTTATGA
*
66340322 GAGCCAGTGTAAGACCATGTTTGGGCATGGCATCAGCACCGA-TG-TATGA
1 GAGCCAGTGTAAGACCATGTTTGGACATGGCATC-G-ACC-ATTGTTATGA
*
66340371 GAGCTAGTGTAAGACCATGT
1 GAGCCAGTGTAAGACCATGT
66340391 CTGGCTTATC
Statistics
Matches: 133, Mismatches: 20, Indels: 21
0.76 0.11 0.12
Matches are distributed among these distances:
46 4 0.03
47 43 0.32
48 54 0.41
49 28 0.21
50 3 0.02
51 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTTTGGACATGGCATCGACCATTGTTATGA
Found at i:66348887 original size:23 final size:22
Alignment explanation
Indices: 66348859--66348915 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 22
66348849 AGCCCCTAAT
*
66348859 ATGCATATTTGTATGATTTATTA
1 ATGCATATTTGT-TCATTTATTA
66348882 ATGCATGATTAT-TTCATTTATTA
1 ATGCAT-ATT-TGTTCATTTATTA
66348905 ATGCATATTTG
1 ATGCATATTTG
66348916 AGATAAATGT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
21 1 0.03
22 3 0.10
23 21 0.70
24 4 0.13
25 1 0.03
ACGTcount: A:0.30, C:0.07, G:0.12, T:0.51
Consensus pattern (22 bp):
ATGCATATTTGTTCATTTATTA
Found at i:66354327 original size:27 final size:27
Alignment explanation
Indices: 66354277--66354328 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
66354267 TTTTATATTA
*
66354277 ATTAATAAAGGTTATATATGTAAAATG
1 ATTAATAAAGGTTATATATATAAAATG
*
66354304 ATTAAT-AATGTTATATAATATAAAA
1 ATTAATAAAGGTTATAT-ATATAAAA
66354329 CAAAAAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (27 bp):
ATTAATAAAGGTTATATATATAAAATG
Found at i:66355286 original size:56 final size:56
Alignment explanation
Indices: 66355223--66355332 Score: 184
Period size: 56 Copynumber: 2.0 Consensus size: 56
66355213 CCATGGCATT
* *
66355223 GATATATGTGTGCGAGTAAGACCATGTTTAATACATTGGCATCGATATGTGATTCC
1 GATATATGTGTGCGAGTAAGACCATGTCTAATACATTGGCATCAATATGTGATTCC
* *
66355279 GATATATGTGTGCGAGTAAGACCATGTCTAGTACGTTGGCATCAATATGTGATT
1 GATATATGTGTGCGAGTAAGACCATGTCTAATACATTGGCATCAATATGTGATT
66355333 ATATGAAAGA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.34
Consensus pattern (56 bp):
GATATATGTGTGCGAGTAAGACCATGTCTAATACATTGGCATCAATATGTGATTCC
Found at i:66364103 original size:27 final size:27
Alignment explanation
Indices: 66364053--66364104 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
66364043 TTTTATATTA
*
66364053 ATTAATAAAGGTTATATATGTAAAATG
1 ATTAATAAAGGTTATATATATAAAATG
*
66364080 ATTAAT-AATGTTATATAATATAAAA
1 ATTAATAAAGGTTATAT-ATATAAAA
66364105 CAAAAAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (27 bp):
ATTAATAAAGGTTATATATATAAAATG
Found at i:66364219 original size:94 final size:94
Alignment explanation
Indices: 66364108--66364294 Score: 313
Period size: 94 Copynumber: 2.0 Consensus size: 94
66364098 TATAAAACAA
*
66364108 AAAATAATTAAAGGCCATGCATGTTTATATTTGATAGCCGAAATTAACTAAAGGAAAAGAAAAAG
1 AAAATAATTAAAAGCCATGCATGTTTATATTTGATAGCCGAAATTAACTAAAGGAAAAGAAAAAG
*
66364173 GAAAGAAAGAC-ATATTCGGCCATTGTTAT
66 AAAAGAAAG-CGATATTCGGCCATTGTTAT
* * *
66364202 AAAATAGTTAAAAGCCATGCATGTTTATATTTGATAGTCGAAATTAGCTAAAGGAAAAGAAAAAG
1 AAAATAATTAAAAGCCATGCATGTTTATATTTGATAGCCGAAATTAACTAAAGGAAAAGAAAAAG
66364267 AAAAGAAAGCGATATTCGGCCATTGTTA
66 AAAAGAAAGCGATATTCGGCCATTGTTA
66364295 AGCTTAATTA
Statistics
Matches: 87, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
93 1 0.01
94 86 0.99
ACGTcount: A:0.45, C:0.10, G:0.19, T:0.26
Consensus pattern (94 bp):
AAAATAATTAAAAGCCATGCATGTTTATATTTGATAGCCGAAATTAACTAAAGGAAAAGAAAAAG
AAAAGAAAGCGATATTCGGCCATTGTTAT
Found at i:66364756 original size:15 final size:15
Alignment explanation
Indices: 66364736--66364765 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
66364726 ATGAAATTAT
66364736 ATTTGAATAATTTTA
1 ATTTGAATAATTTTA
*
66364751 ATTTGAATATTTTTA
1 ATTTGAATAATTTTA
66364766 GATCAAGAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.57
Consensus pattern (15 bp):
ATTTGAATAATTTTA
Found at i:66365183 original size:56 final size:57
Alignment explanation
Indices: 66365092--66365261 Score: 227
Period size: 56 Copynumber: 3.0 Consensus size: 57
66365082 AGACCATGGC
* * *
66365092 ATCGATATATGTGTACGAGTAAGACCATGTTTAATACCTTGGCATCGATATGTGATT
1 ATCGATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATT
* * * *
66365149 -TCGAGATATGTATGCGAGTAAGACCACATTTAATACATTGGCATCGATATGTGGTT
1 ATCGATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATT
* * * *
66365205 AT-GATATATGTGTGCAAGTAAGACCACGTCTAGTACGTTGGCATCGATATGTGATT
1 ATCGATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATT
66365261 A
1 A
66365262 CATGTAAGAC
Statistics
Matches: 97, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
56 96 0.99
57 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (57 bp):
ATCGATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATT
Found at i:66366282 original size:20 final size:20
Alignment explanation
Indices: 66366257--66366299 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
66366247 AATGTGGTAC
66366257 ATGTTTTGTTAAGCAATGAG
1 ATGTTTTGTTAAGCAATGAG
*
66366277 ATGTTTTGTTAAGCTATGAG
1 ATGTTTTGTTAAGCAATGAG
66366297 ATG
1 ATG
66366300 ACTTTACTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.28, C:0.05, G:0.26, T:0.42
Consensus pattern (20 bp):
ATGTTTTGTTAAGCAATGAG
Found at i:66367649 original size:42 final size:41
Alignment explanation
Indices: 66367543--66367697 Score: 161
Period size: 41 Copynumber: 3.7 Consensus size: 41
66367533 AACTTGTACA
* * * *
66367543 ATGCCAACGTCCTAGATGTGGTCTTACACGAATTAAATATG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAATATG
** *
66367584 ATGCCATTGTCCCAGACAG-GGTCTTATACGAAATCAACTATG
1 ATGCCAACGTCCCAGAC-GTGGTCTTACACGAAATCAA-TATG
* *
66367626 ATGCCAACATCCTAGACGTGGTCTTACACGTAAATC-ATAAGTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AAATCAAT-A-T-G
66367670 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
66367698 TGATAACACA
Statistics
Matches: 93, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
41 30 0.32
42 30 0.32
43 6 0.06
44 27 0.29
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (41 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAATATG
Found at i:66372500 original size:46 final size:46
Alignment explanation
Indices: 66372450--66372625 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
66372440 TGGTTGAGCA
*
66372450 TCCGAACTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66372496 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
66372541 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66372589 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66372626 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:66372562 original size:93 final size:93
Alignment explanation
Indices: 66372447--66372618 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
66372437 GGATGGTTGA
* *
66372447 GCATCCGAACTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66372512 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
66372540 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66372605 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
66372619 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:66374888 original size:56 final size:56
Alignment explanation
Indices: 66374802--66374913 Score: 208
Period size: 56 Copynumber: 2.0 Consensus size: 56
66374792 GCAGCCAGCG
66374802 TAGGGAACTCGAGATTTGTTAAACATGAGTGCCAGCGGTGTGGTAGAAATCATTTT
1 TAGGGAACTCGAGATTTGTTAAACATGAGTGCCAGCGGTGTGGTAGAAATCATTTT
66374858 TAGGGAACTCGAGATTTGTTAAATC-TGAGTGCCAGCGGTGTGGTAGAAATCATTTT
1 TAGGGAACTCGAGATTTGTTAAA-CATGAGTGCCAGCGGTGTGGTAGAAATCATTTT
66374914 GGTCCGTGTA
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
56 54 0.98
57 1 0.02
ACGTcount: A:0.28, C:0.12, G:0.29, T:0.31
Consensus pattern (56 bp):
TAGGGAACTCGAGATTTGTTAAACATGAGTGCCAGCGGTGTGGTAGAAATCATTTT
Found at i:66379804 original size:46 final size:46
Alignment explanation
Indices: 66379754--66379929 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
66379744 TGGTTGAGCA
66379754 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66379800 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
66379845 CATCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66379893 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66379930 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:66379910 original size:93 final size:93
Alignment explanation
Indices: 66379751--66379922 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
66379741 GGATGGTTGA
* *
66379751 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66379816 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
66379844 GCATCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66379909 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
66379923 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:66382516 original size:6 final size:6
Alignment explanation
Indices: 66382503--66382534 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
66382493 AAAAATAATT
*
66382503 CAAGTC CAAATC CAAGTC CAAGTC CAAGTC CA
1 CAAGTC CAAGTC CAAGTC CAAGTC CAAGTC CA
66382535 TATCTGAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.38, C:0.34, G:0.12, T:0.16
Consensus pattern (6 bp):
CAAGTC
Found at i:66385906 original size:27 final size:27
Alignment explanation
Indices: 66385874--66385926 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
66385864 TGACAACTAA
**
66385874 GAATAGCCTTTATGGTGAACTCTAAAT
1 GAATAGCCTTTATGACGAACTCTAAAT
*
66385901 GAATAGCCTTTGTGACGAACTCTAAA
1 GAATAGCCTTTATGACGAACTCTAAA
66385927 AGAGATACCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (27 bp):
GAATAGCCTTTATGACGAACTCTAAAT
Found at i:66385940 original size:27 final size:27
Alignment explanation
Indices: 66385872--66385941 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 27
66385862 CATGACAACT
* * **
66385872 AAGAATAGCCTTTATGGTGAACTCTAA
1 AAGAATAGCCCTTGTGACGAACTCTAA
* *
66385899 ATGAATAGCCTTTGTGACGAACTCTAA
1 AAGAATAGCCCTTGTGACGAACTCTAA
66385926 AAGAGATA-CCCTTGTG
1 AAGA-ATAGCCCTTGTG
66385942 GCAATTTCTG
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
27 33 0.92
28 3 0.08
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (27 bp):
AAGAATAGCCCTTGTGACGAACTCTAA
Found at i:66390621 original size:22 final size:23
Alignment explanation
Indices: 66390551--66390726 Score: 88
Period size: 23 Copynumber: 7.7 Consensus size: 23
66390541 AAGACATTGC
* *
66390551 AAATACGGCAGAAAGGCATTATA
1 AAATACGCCACAAAGGCATTATA
* * * * * **
66390574 GAATATGCCAAAAAGGTAATGCA
1 AAATACGCCACAAAGGCATTATA
* *
66390597 AAATATGGCAC-AAGGCATTATA
1 AAATACGCCACAAAGGCATTATA
*
66390619 AAATACGCCACAAAGGCATTACA
1 AAATACGCCACAAAGGCATTATA
* * * *
66390642 GAATACGCAAAAAAGGCATTTTA
1 AAATACGCCACAAAGGCATTATA
* ** * *
66390665 GAATATTCCAC--AGCGTATTACA
1 AAATACGCCACAAAG-GCATTATA
* **
66390687 GAATACGCCACAAAGGCATTGCA
1 AAATACGCCACAAAGGCATTATA
* *
66390710 AAGTATGCCACAAAGGC
1 AAATACGCCACAAAGGC
66390727 TTTTCAAGTA
Statistics
Matches: 112, Mismatches: 37, Indels: 8
0.71 0.24 0.05
Matches are distributed among these distances:
21 2 0.02
22 30 0.27
23 78 0.70
24 2 0.02
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.18
Consensus pattern (23 bp):
AAATACGCCACAAAGGCATTATA
Found at i:66390670 original size:68 final size:68
Alignment explanation
Indices: 66390551--66390706 Score: 161
Period size: 68 Copynumber: 2.3 Consensus size: 68
66390541 AAGACATTGC
* * * * * * *
66390551 AAATACGGCAGAAAGGCATTATAGAATATGCCAAAAAGGTAATGCAAAATATGGCACAAG-GCAT
1 AAATACGCCACAAAGGCATTACAGAATACGCAAAAAAGGCAATGCAAAATATGCCAC-AGCGCAT
*
66390615 TATA
65 TACA
* ** * * *
66390619 AAATACGCCACAAAGGCATTACAGAATACGCAAAAAAGGCATTTTAGAATATTCCACAGCGTATT
1 AAATACGCCACAAAGGCATTACAGAATACGCAAAAAAGGCAATGCAAAATATGCCACAGCGCATT
66390684 ACA
66 ACA
*
66390687 GAATACGCCACAAAGGCATT
1 AAATACGCCACAAAGGCATT
66390707 GCAAAGTATG
Statistics
Matches: 72, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
67 2 0.03
68 70 0.97
ACGTcount: A:0.45, C:0.18, G:0.18, T:0.19
Consensus pattern (68 bp):
AAATACGCCACAAAGGCATTACAGAATACGCAAAAAAGGCAATGCAAAATATGCCACAGCGCATT
ACA
Found at i:66390721 original size:45 final size:45
Alignment explanation
Indices: 66390636--66390721 Score: 111
Period size: 45 Copynumber: 1.9 Consensus size: 45
66390626 CCACAAAGGC
** *
66390636 ATTACAGAATACGCAAAAAAGGCATTTTAGAATATTCCACAGCGT
1 ATTACAGAATACGCAAAAAAGGCATTGCAGAATATGCCACAGCGT
* *
66390681 ATTACAGAATACGCCACAAAGGCATTGCA-AAGTATGCCACA
1 ATTACAGAATACGCAAAAAAGGCATTGCAGAA-TATGCCACA
66390722 AAGGCTTTTC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 2 0.06
45 33 0.94
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.21
Consensus pattern (45 bp):
ATTACAGAATACGCAAAAAAGGCATTGCAGAATATGCCACAGCGT
Found at i:66392646 original size:42 final size:42
Alignment explanation
Indices: 66392540--66392705 Score: 156
Period size: 42 Copynumber: 3.9 Consensus size: 42
66392530 CAATATGTGT
* ** *
66392540 TTTCATGTAAGACCACATCTGGGACGTTGGCATCG-ACTTATGA
1 TTTCGTGTAAGACCATGTCTGGGACATTGGCATCGTA-TT-TGA
66392583 TTTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGA
1 TTT-CGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGA
* * * *
66392626 TTTCGTGTAAGACCTTGTCTGGGA-AGTGCCATCGATATTTGG
1 TTTCGTGTAAGACCATGTCTGGGACATTGGCATCG-TATTTGA
* * ** * *
66392668 TTACATGTAAGACCACATCTGGGACGTTGGCATTGTAT
1 TTTCGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
66392706 GAGCTTTCTA
Statistics
Matches: 102, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
41 8 0.08
42 48 0.47
43 15 0.15
44 30 0.29
45 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.33
Consensus pattern (42 bp):
TTTCGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGA
Found at i:66393457 original size:22 final size:24
Alignment explanation
Indices: 66393432--66393476 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 24
66393422 GTTTTTGGCT
66393432 TATGGAATG-ACATGA-ATTGGTA
1 TATGGAATGAACATGATATTGGTA
**
66393454 TATGTTATGAACATGATATTGGT
1 TATGGAATGAACATGATATTGGT
66393477 TGATTCATGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 7 0.37
23 6 0.32
24 6 0.32
ACGTcount: A:0.33, C:0.04, G:0.24, T:0.38
Consensus pattern (24 bp):
TATGGAATGAACATGATATTGGTA
Found at i:66408318 original size:13 final size:13
Alignment explanation
Indices: 66408300--66408328 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
66408290 TTTAGTTTAA
66408300 TTAGTTAATTAGT
1 TTAGTTAATTAGT
66408313 TTAGTTAATTAGT
1 TTAGTTAATTAGT
66408326 TTA
1 TTA
66408329 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:66411104 original size:26 final size:25
Alignment explanation
Indices: 66411048--66411108 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
66411038 ACGTTGGAAC
*
66411048 GATGCTAACACAAGCTATAAATATA
1 GATGCTCACACAAGCTATAAATATA
* *
66411073 TATGCTCACACAAGCTGTAAA-ATA
1 GATGCTCACACAAGCTATAAATATA
66411097 GACCTGCTCACA
1 GA--TGCTCACA
66411109 TGAGGTGTGG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 4 0.13
25 18 0.60
26 8 0.27
ACGTcount: A:0.41, C:0.23, G:0.13, T:0.23
Consensus pattern (25 bp):
GATGCTCACACAAGCTATAAATATA
Found at i:66415354 original size:49 final size:49
Alignment explanation
Indices: 66415282--66415462 Score: 179
Period size: 49 Copynumber: 3.7 Consensus size: 49
66415272 CTGGTACGCA
* **
66415282 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATAATTGATACACG
* * * * * * * *
66415331 TAGTAGCTTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-TAAT-TGATACACG
* * * *
66415382 TAGTAGCCTGCACTTAGTGCTACACATGAGACC-AATAATTCGTTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATAATT-GATACACG
66415431 TAGTAGCCTGCACTTAGTACT--ACACGTGACCT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT
66415463 CACAATAGAT
Statistics
Matches: 105, Mismatches: 23, Indels: 9
0.77 0.17 0.07
Matches are distributed among these distances:
47 8 0.08
49 60 0.57
50 4 0.04
51 33 0.31
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATAATTGATACACG
Found at i:66415429 original size:100 final size:100
Alignment explanation
Indices: 66415269--66415455 Score: 277
Period size: 100 Copynumber: 1.9 Consensus size: 100
66415259 TAGCCAAAGC
* * *
66415269 TATCTGGTACGCATAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATTGATACACGTAG
1 TATCAGGTACGCATAGTAGCCTACACTTAGTACTACACACGAGACCTAACAATTGATACACGTAG
*
66415334 TAGCTTGCACTTAGTACTACACACGTGATCGAAGT
66 TAGCCTGCACTTAGTACTACACACGTGATCGAAGT
* * * * *
66415369 TATCAGGTACGCATAGTAGCCTGCACTTAGTGCTACACATGAGACC-AATAATTCGTTACACGTA
1 TATCAGGTACGCATAGTAGCCTACACTTAGTACTACACACGAGACCTAACAATT-GATACACGTA
66415433 GTAGCCTGCACTTAGTACTACAC
65 GTAGCCTGCACTTAGTACTACAC
66415456 GTGACCTCAC
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
99 5 0.06
100 72 0.94
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (100 bp):
TATCAGGTACGCATAGTAGCCTACACTTAGTACTACACACGAGACCTAACAATTGATACACGTAG
TAGCCTGCACTTAGTACTACACACGTGATCGAAGT
Found at i:66418795 original size:27 final size:26
Alignment explanation
Indices: 66418765--66418816 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
66418755 AGCTTAAATA
*
66418765 TGTCTAGTTTA-GGACATCAATTTAATG
1 TGTCTAGCTTAGGGACA--AATTTAATG
66418792 TGTCTAGCTTAGGGACAAATTTAAT
1 TGTCTAGCTTAGGGACAAATTTAAT
66418817 TGTTGCTGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 8 0.35
27 10 0.43
28 5 0.22
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (26 bp):
TGTCTAGCTTAGGGACAAATTTAATG
Found at i:66422101 original size:49 final size:49
Alignment explanation
Indices: 66421947--66422122 Score: 185
Period size: 49 Copynumber: 3.5 Consensus size: 49
66421937 CTGGTATGCA
* * * ** *
66421947 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTACACTTAGTACTACACATGCGACC-AATAATCTGGTACACG
* * * * * *
66421997 TAGTAGCCTGCACTTAATACTACACACATGATCGA--AATTATCGGGTACGCA
1 TAGTAGCCTACACTTAGTACT--ACACATG--CGACCAATAATCTGGTACACG
66422048 TAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCTGGTACACG
1 TAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCTGGTACACG
66422097 TAGTAGCCTACACTTAGTACTACACA
1 TAGTAGCCTACACTTAGTACTACACA
66422123 CGTGACCTCA
Statistics
Matches: 105, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
47 3 0.03
49 45 0.43
50 20 0.19
51 29 0.28
52 6 0.06
54 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCTGGTACACG
Found at i:66425958 original size:46 final size:46
Alignment explanation
Indices: 66425905--66426080 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
66425895 TGGTTGAGCA
* *
66425905 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
* * * * * *
66425951 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATACGA-ACG
* *
66425998 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
* * *
66426044 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66426081 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
45 1 0.01
46 69 0.66
47 34 0.32
48 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
Found at i:66426061 original size:93 final size:93
Alignment explanation
Indices: 66425902--66426073 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
66425892 GGATGGTTGA
* *
66425902 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
66425967 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
66425995 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
66426060 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
66426074 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:66430997 original size:40 final size:40
Alignment explanation
Indices: 66430951--66431175 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
66430941 CTTGCACAAG
* * *
66430951 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
66430991 GCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
66431031 GCCTTCGAGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
66431071 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
66431111 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
66431152 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
66431176 CATTCGAATA
Statistics
Matches: 157, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 127 0.81
41 29 0.18
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:66431048 original size:80 final size:79
Alignment explanation
Indices: 66430915--66431175 Score: 276
Period size: 80 Copynumber: 3.3 Consensus size: 79
66430905 CTCAAGTAAT
* * * * * * * *
66430915 CTTCGGGATTTAG-CTGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTC-GGTCTTAGCCCGGATATAGT
*
66430978 CACTAGCATAAATGC
65 CACTAGCACAAATGC
* * * *
66430993 CTTCGGGACTTAGCCCGGATATAATC-GCTAGCACAAATGCCTTCGAGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATAT-AGCAACTAGCACAAATGCCTTCG-GTCTTAGCCCGGATATAG
*
66431057 TCGCTAGCACAAATGC
64 TCACTAGCACAAATGC
* * * * *
66431073 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGG-TCTTAGCCCGGATATAGT
*
66431138 CACCTAGCACAAAAGC
65 CA-CTAGCACAAATGC
66431154 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
66431176 CATTCGAATA
Statistics
Matches: 152, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
78 12 0.08
79 17 0.11
80 90 0.59
81 33 0.22
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGTCTTAGCCCGGATATAGTC
ACTAGCACAAATGC
Done.