Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 196 of 235
Found at i:66698163 original size:38 final size:38
Alignment explanation
Indices: 66698061--66698143 Score: 121
Period size: 38 Copynumber: 2.2 Consensus size: 38
66698051 TTAAACTCAT
* * * *
66698061 ATATAATACCAGCACTAGGCCTGCGGGATTTAACCTGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGA
*
66698099 ATATAATACCAGCACGAAGCTTGCGGGATTTAACCCGA
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGA
66698137 ATATAAT
1 ATATAAT
66698144 TCTAGCATAT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGA
Found at i:66701133 original size:42 final size:43
Alignment explanation
Indices: 66701084--66701205 Score: 174
Period size: 43 Copynumber: 2.8 Consensus size: 43
66701074 CTAAACTCAT
* * *
66701084 TCACCGGCATTACA-CCTGCTAAGCTCGAAGCCCGATATTAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGATATTAAC
* **
66701126 TCACCGGCATTATAGCCTGCCAGGCTCAAAGCCTAATATTAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGATATTAAC
66701169 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAA-GCCCGA
66701206 ATAGTACCGT
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 13 0.19
43 52 0.75
44 4 0.06
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.21
Consensus pattern (43 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGATATTAAC
Found at i:66705248 original size:39 final size:40
Alignment explanation
Indices: 66705203--66705334 Score: 176
Period size: 40 Copynumber: 3.3 Consensus size: 40
66705193 GCTCCTCGTT
* * *
66705203 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
66705243 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
66705282 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
66705322 CAAAGGCCTTCGG
1 CAAATGCCTTCGG
66705335 ATCTTAGTCC
Statistics
Matches: 80, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
39 34 0.43
40 46 0.57
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:66705396 original size:41 final size:41
Alignment explanation
Indices: 66705319--66705396 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
66705309 TTAGTATCTC
* * *
66705319 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
66705360 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
66705397 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:66711718 original size:22 final size:22
Alignment explanation
Indices: 66711693--66711762 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 22
66711683 TAGAATCGAC
66711693 TAAACCGTAGCTCTGATACCAA
1 TAAACCGTAGCTCTGATACCAA
** * *
66711715 TAAAATGTATC-CTAGA-ATCAA
1 TAAACCGTAGCTCT-GATACCAA
66711736 CTAAACCGTAGCTCTGATACCAA
1 -TAAACCGTAGCTCTGATACCAA
66711759 TAAA
1 TAAA
66711763 ATGTAACACC
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
21 6 0.17
22 24 0.67
23 6 0.17
ACGTcount: A:0.41, C:0.23, G:0.11, T:0.24
Consensus pattern (22 bp):
TAAACCGTAGCTCTGATACCAA
Found at i:66711730 original size:44 final size:44
Alignment explanation
Indices: 66711680--66711767 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
66711670 ATTACGGTAG
*
66711680 TCCTAGAATCGACTAAACCGTAGCTCTGATACCAATAAAATGTA
1 TCCTAGAATCAACTAAACCGTAGCTCTGATACCAATAAAATGTA
66711724 TCCTAGAATCAACTAAACCGTAGCTCTGATACCAATAAAATGTA
1 TCCTAGAATCAACTAAACCGTAGCTCTGATACCAATAAAATGTA
66711768 ACACCCCGAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.40, C:0.23, G:0.12, T:0.25
Consensus pattern (44 bp):
TCCTAGAATCAACTAAACCGTAGCTCTGATACCAATAAAATGTA
Found at i:66713201 original size:40 final size:40
Alignment explanation
Indices: 66713153--66713336 Score: 192
Period size: 40 Copynumber: 4.6 Consensus size: 40
66713143 TCCTCGTTCA
* * * *
66713153 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
*
66713193 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
* *
66713233 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
* ** * * * *
66713273 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACG
* *
66713313 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
66713337 CAGCATTCAA
Statistics
Matches: 123, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.02
40 112 0.91
41 8 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
Found at i:66713345 original size:41 final size:41
Alignment explanation
Indices: 66713268--66713345 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
66713258 TTAGTATCTC
* * *
66713268 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
66713309 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
66713346 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:66720174 original size:19 final size:19
Alignment explanation
Indices: 66720150--66720240 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
66720140 ATAATCTTCA
66720150 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
66720169 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
66720188 ATGATA--CAATATTAGAT
1 ATGATATGCAATCTTAGAT
66720205 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
66720223 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
66720241 AGATATGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 15 0.22
18 15 0.22
19 37 0.55
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:66720220 original size:35 final size:36
Alignment explanation
Indices: 66720158--66720228 Score: 126
Period size: 35 Copynumber: 2.0 Consensus size: 36
66720148 CAATGATATG
*
66720158 CAATCTTAGATATGATATGCAATCTTAGATATGATA
1 CAATATTAGATATGATATGCAATCTTAGATATGATA
66720194 CAATATTAGATATGAT-TGCAATCTTAGATATGATA
1 CAATATTAGATATGATATGCAATCTTAGATATGATA
66720229 TGCAATCTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 19 0.56
36 15 0.44
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (36 bp):
CAATATTAGATATGATATGCAATCTTAGATATGATA
Found at i:66720266 original size:22 final size:22
Alignment explanation
Indices: 66720150--66720263 Score: 78
Period size: 19 Copynumber: 5.8 Consensus size: 22
66720140 ATAATCTTCA
66720150 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
66720169 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
* *
66720188 ATGATA--CAATATTAGAT---
1 ATGATATGCAATCTTAGAAGAT
66720205 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
66720223 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
66720245 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
66720264 GATTTAATTT
Statistics
Matches: 76, Mismatches: 6, Indels: 22
0.73 0.06 0.21
Matches are distributed among these distances:
17 11 0.14
18 11 0.14
19 34 0.45
22 8 0.11
23 12 0.16
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:66720555 original size:18 final size:18
Alignment explanation
Indices: 66720527--66720565 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
66720517 CCATGTTTCC
*
66720527 TTAATTTTTTTTATATATT
1 TTAATTTTTTTAATA-ATT
66720546 TTAA-TTTTTTAATAATT
1 TTAATTTTTTTAATAATT
66720563 TTA
1 TTA
66720566 GTATCATATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 9 0.47
19 4 0.21
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
TTAATTTTTTTAATAATT
Found at i:66730212 original size:78 final size:77
Alignment explanation
Indices: 66730074--66730290 Score: 317
Period size: 78 Copynumber: 2.8 Consensus size: 77
66730064 CGAAGAAACA
** * * *
66730074 GATTTGGCATCTCCATATTCGACGGGGAGCAGATCGAAGACACAGCAGATCTGACTTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGAT-TGACCTTCATTGAA
*
66730139 GTAGATCCAAGAT
65 GCAGATCCAAGAT
* *
66730152 GATTTGGCATCTCTGTAATAGACGGGGAGCAGATCGAAGACATAACAGATTGGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATT-GACCTTCATTGAA
66730217 GCAGATCCAAGAT
65 GCAGATCCAAGAT
* *
66730230 GATTTGGCATCTCTGTATTAGAAGGGGAGCAGATCGAAGACATAGTAGATTTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGA-TTGACCTTCAT
66730291 GTGTTTACAT
Statistics
Matches: 125, Mismatches: 12, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
77 1 0.01
78 122 0.98
79 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (77 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATTGACCTTCATTGAAG
CAGATCCAAGAT
Found at i:66730368 original size:45 final size:45
Alignment explanation
Indices: 66730304--66730503 Score: 215
Period size: 45 Copynumber: 4.5 Consensus size: 45
66730294 TTTACATCGA
* * * * *
66730304 AGCAGATCCAAGATGACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAAATCGAAGATAACAGATTTAGCATCTCTGTATTAGATGGGG
*
66730349 AGCAAATCGGAGATAACAGATTTAGCATCTCTGTATTAGATGGGG
1 AGCAAATCGAAGATAACAGATTTAGCATCTCTGTATTAGATGGGG
** ** * *
66730394 AG-AAGATTAAAGA-AGTAGATTTGGCGTCTCTGTATTAGATGGGG
1 AGCAA-ATCGAAGATAACAGATTTAGCATCTCTGTATTAGATGGGG
* *
66730438 AGCAGATCGAAGATAACAGATTTAGCGTCTCTGTATTAGATGGGG
1 AGCAAATCGAAGATAACAGATTTAGCATCTCTGTATTAGATGGGG
* * * *
66730483 AACAGATCAAAGATAGCAGAT
1 AGCAAATCGAAGATAACAGAT
66730504 ATCCCCTTCC
Statistics
Matches: 130, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
44 37 0.28
45 93 0.72
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.26
Consensus pattern (45 bp):
AGCAAATCGAAGATAACAGATTTAGCATCTCTGTATTAGATGGGG
Found at i:66730472 original size:89 final size:89
Alignment explanation
Indices: 66730321--66730483 Score: 281
Period size: 89 Copynumber: 1.8 Consensus size: 89
66730311 CCAAGATGAC
*
66730321 AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACAGATTTAGCATCTCTGTATT
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTAGCATCTCTGTATT
66730386 AGATGGGGAGAAGATTAAAGAAGT
66 AGATGGGGAGAAGATTAAAGAAGT
* * * *
66730410 AGATTTGGCGTCTCTGTATTAGATGGGGAGCAGATCGAAGATAACAGATTTAGCGTCTCTGTATT
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTAGCATCTCTGTATT
66730475 AGATGGGGA
66 AGATGGGGA
66730484 ACAGATCAAA
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
89 69 1.00
ACGTcount: A:0.31, C:0.12, G:0.29, T:0.28
Consensus pattern (89 bp):
AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTAGCATCTCTGTATT
AGATGGGGAGAAGATTAAAGAAGT
Found at i:66730934 original size:35 final size:37
Alignment explanation
Indices: 66730863--66730960 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
66730853 ATAATCTTCA
66730863 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
66730901 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
66730936 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
66730961 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:66730960 original size:17 final size:19
Alignment explanation
Indices: 66730863--66730953 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
66730853 ATAATCTTCA
66730863 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
66730882 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
66730901 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
66730918 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
66730936 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
66730954 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:66730979 original size:22 final size:22
Alignment explanation
Indices: 66730863--66730976 Score: 96
Period size: 19 Copynumber: 5.8 Consensus size: 22
66730853 ATAATCTTCA
66730863 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
66730882 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
66730901 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
66730918 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
66730936 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
66730958 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
66730977 GATTTAATTT
Statistics
Matches: 86, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 34 0.40
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:66731267 original size:17 final size:17
Alignment explanation
Indices: 66731241--66731277 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
66731231 CATGTTTCCC
*
66731241 TAATTTTTTTATATATTT
1 TAATTTTTTAATA-ATTT
66731259 TAATTTTTTAATAATTT
1 TAATTTTTTAATAATTT
66731276 TA
1 TA
66731278 GTATCATATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TAATTTTTTAATAATTT
Found at i:66733310 original size:17 final size:17
Alignment explanation
Indices: 66733284--66733320 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
66733274 CATGTTTCCC
*
66733284 TAATTTTTTTATATATTT
1 TAATTTTTTAATA-ATTT
66733302 TAATTTTTTAATAATTT
1 TAATTTTTTAATAATTT
66733319 TA
1 TA
66733321 GTATCATATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TAATTTTTTAATAATTT
Found at i:66734167 original size:44 final size:44
Alignment explanation
Indices: 66734102--66734185 Score: 98
Period size: 44 Copynumber: 1.9 Consensus size: 44
66734092 TTGCTATCTC
* *
66734102 AAAGTCCATGGTTGTACCATGGAAATTAAAGAAGAATTGACGAA
1 AAAGTCCATGGTTATAACATGGAAATTAAAGAAGAATTGACGAA
* * * *
66734146 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGA
1 AAAGTCCATGGTT-ATAACATGGAAATTAAAGAAGAATTGA
66734186 TGGTTAAGGA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
43 3 0.09
44 30 0.91
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.25
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGAAATTAAAGAAGAATTGACGAA
Found at i:66734399 original size:54 final size:54
Alignment explanation
Indices: 66734331--66734780 Score: 264
Period size: 55 Copynumber: 8.6 Consensus size: 54
66734321 GCACTAAGAT
* * *
66734331 AAGGATATTATGTAAGACCATGCCAAGGCATGGCACTGATAAGTTCTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* ** *
66734385 AAGGAAATCATGTAAGACCATGTTAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGC
* * * * * *
66734440 AAAGG-T-CCTATGTATGACCATGCCAAGCCATGGCATTGGTTAGTTC-AT-AGGT
1 -AAGGATATC-ATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * **** * *
66734492 AAGGATACCATGTAAGGCCATGTTTGGAACATGGCATT--T--G----GTAAGAC
1 AAGGATATCATGTAAGACCATGCCAAG-ACATGGCATTGATAAGTTCTATAAGGC
* **** * *
66734539 AAGGATACCATGTAAGACCATGTTTGGAACATAGCATTTGGTAAG----AT-----
1 AAGGATATCATGTAAGACCATGCCAAG-ACATGGCA-TTGATAAGTTCTATAAGGC
** * *
66734586 AAGGATATCACATAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGT
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
66734640 AAGGAAATCATGTAAGACCATGTCAAGACATGACATTGATGAGTTACTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGC
* * * *
66734695 AA--ATGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATAT--CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * *
66734748 AAGGATACCACGTAAGACCATGTCAAGACATGG
1 AAGGATATCATGTAAGACCATGCCAAGACATGG
66734781 AAATGGTAAG
Statistics
Matches: 312, Mismatches: 58, Indels: 53
0.74 0.14 0.13
Matches are distributed among these distances:
45 7 0.02
46 7 0.02
47 56 0.18
48 2 0.01
49 3 0.01
50 1 0.00
51 5 0.02
52 18 0.06
53 46 0.15
54 79 0.25
55 84 0.27
56 4 0.01
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.24
Consensus pattern (54 bp):
AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:66734561 original size:47 final size:47
Alignment explanation
Indices: 66734492--66734607 Score: 178
Period size: 47 Copynumber: 2.5 Consensus size: 47
66734482 GTTCATAGGT
* *
66734492 AAGGATACCATGTAAGGCCATGTTTGGAACATGGCATTTGGTAAGAC
1 AAGGATACCATGTAAGACCATGTTTGGAACATAGCATTTGGTAAGAC
*
66734539 AAGGATACCATGTAAGACCATGTTTGGAACATAGCATTTGGTAAGAT
1 AAGGATACCATGTAAGACCATGTTTGGAACATAGCATTTGGTAAGAC
* **
66734586 AAGGATATCACATAAGACCATG
1 AAGGATACCATGTAAGACCATG
66734608 CCAAGGCATG
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 63 1.00
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (47 bp):
AAGGATACCATGTAAGACCATGTTTGGAACATAGCATTTGGTAAGAC
Found at i:66744240 original size:18 final size:17
Alignment explanation
Indices: 66744196--66744241 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 17
66744186 GATTCTTAAT
66744196 AAGAATAA-AAATAAAA
1 AAGAATAAGAAATAAAA
66744212 AAGAA-AAGAAATAAAGA
1 AAGAATAAGAAATAAA-A
*
66744229 AATAATAAGAAAT
1 AAGAATAAGAAAT
66744242 CAAATAGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
15 2 0.08
16 12 0.46
17 5 0.19
18 7 0.27
ACGTcount: A:0.76, C:0.00, G:0.11, T:0.13
Consensus pattern (17 bp):
AAGAATAAGAAATAAAA
Found at i:66750694 original size:43 final size:43
Alignment explanation
Indices: 66750629--66750796 Score: 189
Period size: 43 Copynumber: 3.9 Consensus size: 43
66750619 AGCTCGTACA
* * * *
66750629 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATAACG
* * *
66750671 ATGCCACTATCCCAGACAGGGTCTTACACGAAATCA-ATTAACG
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACA-TAACG
* * *
66750714 ATGCCAATGTCCTAGACATGGTCTTACACGTAATCACA-ACACA
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATA-ACG
* *
66750757 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATA
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATA
66750797 TCTGTAACCT
Statistics
Matches: 106, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
42 7 0.07
43 97 0.92
44 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (43 bp):
ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATAACG
Found at i:66753207 original size:31 final size:31
Alignment explanation
Indices: 66753169--66753232 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
66753159 NNNNNNNNGT
66753169 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* ** *
66753200 AAAGGCTTCGGCCTAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
66753231 AA
1 AA
66753233 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:66755131 original size:53 final size:53
Alignment explanation
Indices: 66755034--66755140 Score: 137
Period size: 53 Copynumber: 2.0 Consensus size: 53
66755024 TATCATATTG
* * **
66755034 TCCCTTATTCTCCCACTTAATGATCCTTTCCTGCTCATCGCCTTATTTCTCCT
1 TCCCTTATTCTCCCACTTAATGACCCTTGCCCACTCATCGCCTTATTTCTCCT
*
66755087 TCCCTTATTCTCCC-CTTTAATGACCCTTGCCCACTCA-CTTCCTTATTTCTCCT
1 TCCCTTATTCTCCCAC-TTAATGACCCTTGCCCACTCATC-GCCTTATTTCTCCT
66755140 T
1 T
66755141 TTCTCACCTT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
52 2 0.04
53 45 0.96
ACGTcount: A:0.13, C:0.39, G:0.05, T:0.43
Consensus pattern (53 bp):
TCCCTTATTCTCCCACTTAATGACCCTTGCCCACTCATCGCCTTATTTCTCCT
Found at i:66761180 original size:18 final size:17
Alignment explanation
Indices: 66761146--66761188 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
66761136 AATCTTAAGT
*
66761146 CTAAAAATAACTAGAAA
1 CTAAAAATAAATAGAAA
*
66761163 CTAAAATATAAATTGAAA
1 CTAAAA-ATAAATAGAAA
*
66761181 ATAAAAAT
1 CTAAAAAT
66761189 CTAAGTTACA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.65, C:0.07, G:0.05, T:0.23
Consensus pattern (17 bp):
CTAAAAATAAATAGAAA
Found at i:66764854 original size:27 final size:25
Alignment explanation
Indices: 66764789--66764858 Score: 77
Period size: 27 Copynumber: 2.7 Consensus size: 25
66764779 TTATACATGT
*
66764789 ATGCTCACACGAGCTGTGAATTAGA
1 ATGCTCACACGAGCTGTGAATGAGA
* * *
66764814 ATGCTCACATGAGCTGTGAAAATGGGC
1 ATGCTCACACGAGCTGTG--AATGAGA
*
66764841 CTGCTCACACGAGCTGTG
1 ATGCTCACACGAGCTGTG
66764859 GGGCGAAACG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
25 17 0.46
27 20 0.54
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (25 bp):
ATGCTCACACGAGCTGTGAATGAGA
Found at i:66775279 original size:39 final size:39
Alignment explanation
Indices: 66775214--66775322 Score: 124
Period size: 34 Copynumber: 2.9 Consensus size: 39
66775204 AAGAATAGTT
* *
66775214 TGGGCCTAAGCCCATTTCAGTGACAGTCCAGTATCAATG
1 TGGGCCTCAGCCCATTACAGTGACAGTCCAGTATCAATG
*
66775253 TGGGCCTCAGCCC-TT--A--G-CAGTTACAGTATCAATG
1 TGGGCCTCAGCCCATTACAGTGACAG-TCCAGTATCAATG
66775287 TGGGCC-CTAGCCCATTACAGTGACAGTCCAGTATCA
1 TGGGCCTC-AGCCCATTACAGTGACAGTCCAGTATCA
66775323 GTAATGCAAC
Statistics
Matches: 59, Mismatches: 3, Indels: 16
0.76 0.04 0.21
Matches are distributed among these distances:
33 4 0.07
34 24 0.41
35 2 0.03
36 1 0.02
37 1 0.02
38 2 0.03
39 22 0.37
40 3 0.05
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
TGGGCCTCAGCCCATTACAGTGACAGTCCAGTATCAATG
Found at i:66794914 original size:16 final size:16
Alignment explanation
Indices: 66794890--66794920 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
66794880 TTTCTTCACT
66794890 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
66794906 TACTTACTTACTTAA
1 TACTCACTTACTTAA
66794921 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:66794926 original size:20 final size:20
Alignment explanation
Indices: 66794887--66794926 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
66794877 AAATTTCTTC
* *
66794887 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
66794907 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
66794927 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:66801595 original size:17 final size:16
Alignment explanation
Indices: 66801572--66801609 Score: 67
Period size: 17 Copynumber: 2.3 Consensus size: 16
66801562 TTCTAAGCAT
66801572 TACTTTTATTGCAACA
1 TACTTTTATTGCAACA
66801588 TCACTTTTATTGCAACA
1 T-ACTTTTATTGCAACA
66801605 TACTT
1 TACTT
66801610 AAGTGATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 5 0.24
17 16 0.76
ACGTcount: A:0.29, C:0.21, G:0.05, T:0.45
Consensus pattern (16 bp):
TACTTTTATTGCAACA
Found at i:66810152 original size:115 final size:114
Alignment explanation
Indices: 66809941--66810285 Score: 555
Period size: 115 Copynumber: 3.0 Consensus size: 114
66809931 AACTTTAAGC
* *
66809941 CTCGAAGTAAAGTGGTACTCGAGGAACTTTCGGGAGTGGTAGAAAAATCACCATGTTCAATTCTT
1 CTCGAAGTAAAGTGGTACTCGAGGAACTTTCGGGAGTGGTAGAATAATCACCAAGTTCAATTC-T
* * *
66810006 GAGAAAGTTGTAGAAAAACCTGCAAATGATCAACAACATAGAGGAATACG
65 CAGAAAGTTGTAGAAAAACCTACAAACGATCAACAACATAGAGGAATACG
*
66810056 CTCGAAGTAAAGTGGTACTTGAGGAACTTTCGGGAGTGGTAGAATAATCACCAAGTTCAATTCTA
1 CTCGAAGTAAAGTGGTACTCGAGGAACTTTCGGGAGTGGTAGAATAATCACCAAGTTCAATTCT-
* **
66810121 CAGAAAGTTATAGAAAAACCTACAAACGATCAACAACATAGAGGAATAAA
65 CAGAAAGTTGTAGAAAAACCTACAAACGATCAACAACATAGAGGAATACG
* *
66810171 CTCAAAGTAAAGTGGTACTCGAGGAACTTTCGGGAGTGGTAGAATAATCACCAAGTTTAATTCTC
1 CTCGAAGTAAAGTGGTACTCGAGGAACTTTCGGGAGTGGTAGAATAATCACCAAGTTCAATTCTC
*
66810236 GAGAAAGTTGTAGGAAAACCTACAAACGATCAACAACATAGAGGAATACG
66 -AGAAAGTTGTAGAAAAACCTACAAACGATCAACAACATAGAGGAATACG
66810286 TCGTAGTGGA
Statistics
Matches: 212, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
114 2 0.01
115 210 0.99
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.22
Consensus pattern (114 bp):
CTCGAAGTAAAGTGGTACTCGAGGAACTTTCGGGAGTGGTAGAATAATCACCAAGTTCAATTCTC
AGAAAGTTGTAGAAAAACCTACAAACGATCAACAACATAGAGGAATACG
Found at i:66812080 original size:15 final size:15
Alignment explanation
Indices: 66812062--66812093 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
66812052 TATTTTACTA
*
66812062 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
66812077 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
66812092 TT
1 TT
66812094 TGCATGCACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:66815753 original size:30 final size:29
Alignment explanation
Indices: 66815700--66815756 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
66815690 TTCCCAAGCC
66815700 TAGGGGAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAGTGTAAATATGCAAAAGTT
* * *
66815729 TAGGGGCAAAATTGTAATTTTGCAAAAG
1 TAGGGG-AAAAGTGTAAATATGCAAAAG
66815757 AATGAGTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 6 0.25
30 18 0.75
ACGTcount: A:0.42, C:0.05, G:0.26, T:0.26
Consensus pattern (29 bp):
TAGGGGAAAAGTGTAAATATGCAAAAGTT
Found at i:66828325 original size:202 final size:202
Alignment explanation
Indices: 66827979--66828382 Score: 808
Period size: 202 Copynumber: 2.0 Consensus size: 202
66827969 TGTTGAGTTT
66827979 CCAGGAAAACTCGATGGATTACCCATTATTTGTCAATTAATAGGAATGATAGTTCCATATATGCA
1 CCAGGAAAACTCGATGGATTACCCATTATTTGTCAATTAATAGGAATGATAGTTCCATATATGCA
66828044 CTCCTGCGAACCTCACATCATATGGCAGGATTACCAGTCCAGGCTAAATCCCTTATATCATGAAC
66 CTCCTGCGAACCTCACATCATATGGCAGGATTACCAGTCCAGGCTAAATCCCTTATATCATGAAC
66828109 TCGTAAGGTGATGTCGAGATTACCAGTCCAGGCTAAATTCAGACCCTAATCAGATTACCCGTCCG
131 TCGTAAGGTGATGTCGAGATTACCAGTCCAGGCTAAATTCAGACCCTAATCAGATTACCCGTCCG
66828174 GGCTAAA
196 GGCTAAA
66828181 CCAGGAAAACTCGATGGATTACCCATTATTTGTCAATTAATAGGAATGATAGTTCCATATATGCA
1 CCAGGAAAACTCGATGGATTACCCATTATTTGTCAATTAATAGGAATGATAGTTCCATATATGCA
66828246 CTCCTGCGAACCTCACATCATATGGCAGGATTACCAGTCCAGGCTAAATCCCTTATATCATGAAC
66 CTCCTGCGAACCTCACATCATATGGCAGGATTACCAGTCCAGGCTAAATCCCTTATATCATGAAC
66828311 TCGTAAGGTGATGTCGAGATTACCAGTCCAGGCTAAATTCAGACCCTAATCAGATTACCCGTCCG
131 TCGTAAGGTGATGTCGAGATTACCAGTCCAGGCTAAATTCAGACCCTAATCAGATTACCCGTCCG
66828376 GGCTAAA
196 GGCTAAA
66828383 TCTGTAATGC
Statistics
Matches: 202, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
202 202 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.26
Consensus pattern (202 bp):
CCAGGAAAACTCGATGGATTACCCATTATTTGTCAATTAATAGGAATGATAGTTCCATATATGCA
CTCCTGCGAACCTCACATCATATGGCAGGATTACCAGTCCAGGCTAAATCCCTTATATCATGAAC
TCGTAAGGTGATGTCGAGATTACCAGTCCAGGCTAAATTCAGACCCTAATCAGATTACCCGTCCG
GGCTAAA
Found at i:66832583 original size:36 final size:36
Alignment explanation
Indices: 66832543--66832611 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 36
66832533 TAGCCCAGCT
* ** *
66832543 ATGGTTTTACACGATGTCTCATATCGATGCCATGTC
1 ATGGTCTTACACGAAATCACATATCGATGCCATGTC
*
66832579 ATGGTCTTACATGAAATCACATATCGATGCCAT
1 ATGGTCTTACACGAAATCACATATCGATGCCAT
66832612 ATCCCAGATA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 28 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (36 bp):
ATGGTCTTACACGAAATCACATATCGATGCCATGTC
Found at i:66832784 original size:24 final size:23
Alignment explanation
Indices: 66832732--66832785 Score: 65
Period size: 25 Copynumber: 2.3 Consensus size: 23
66832722 GAACTTGCTC
*
66832732 ATAATATTAATCATATAAATCAT
1 ATAATATTAATCATATAAAACAT
*
66832755 ATAATATTAAATCAATCTAAAACAT
1 ATAATATT-AATC-ATATAAAACAT
66832780 A-AATAT
1 ATAATAT
66832786 AGAATTTCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 8 0.30
24 9 0.33
25 10 0.37
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (23 bp):
ATAATATTAATCATATAAAACAT
Found at i:66837559 original size:5 final size:5
Alignment explanation
Indices: 66837544--66837662 Score: 84
Period size: 5 Copynumber: 22.8 Consensus size: 5
66837534 TATTACACAA
*
66837544 AAAATT AAAAT AAAAT AAAGT -AAAT AACTAAT AAAAT AAAAT AATTAAT
1 AAAA-T AAAAT AAAAT AAAAT AAAAT AA--AAT AAAAT AAAAT AA--AAT
* * * *
66837593 -TAAT AAGAT ATAAT AAAA- AATAAA AAAAT AAAAT AAAAT AAAAT GAAAAT
1 AAAAT AAAAT AAAAT AAAAT AA-AAT AAAAT AAAAT AAAAT AAAAT -AAAAT
66837643 AAAATT AAAGA- AAAAT AAAA
1 AAAA-T AAA-AT AAAAT AAAA
66837663 ATTGGGTTGT
Statistics
Matches: 92, Mismatches: 9, Indels: 25
0.73 0.07 0.20
Matches are distributed among these distances:
4 9 0.10
5 59 0.64
6 15 0.16
7 9 0.10
ACGTcount: A:0.73, C:0.01, G:0.03, T:0.23
Consensus pattern (5 bp):
AAAAT
Found at i:66837567 original size:10 final size:11
Alignment explanation
Indices: 66837544--66837664 Score: 53
Period size: 11 Copynumber: 11.0 Consensus size: 11
66837534 TATTACACAA
66837544 AAAATTAAAAT
1 AAAATTAAAAT
*
66837555 AAAA-TAAAGT
1 AAAATTAAAAT
66837565 -AAA-TAACTAAT
1 AAAATTAA--AAT
66837576 AAAA-TAAAAT
1 AAAATTAAAAT
66837586 --AATTAATTAAT
1 AAAATTAA--AAT
*
66837597 AAGATATAATAA-
1 AAAAT-TAA-AAT
*
66837609 AAAATAAAAAAAT
1 AAAAT-TAA-AAT
66837622 AAAA-TAAAAT
1 AAAATTAAAAT
*
66837632 AAAATGAAAAT
1 AAAATTAAAAT
66837643 AAAATTAAAGA-
1 AAAATTAAA-AT
*
66837654 AAAATAAAAAT
1 AAAATTAAAAT
66837665 TGGGTTGTCT
Statistics
Matches: 87, Mismatches: 10, Indels: 26
0.71 0.08 0.21
Matches are distributed among these distances:
8 2 0.02
9 9 0.10
10 16 0.18
11 32 0.37
12 16 0.18
13 9 0.10
14 3 0.03
ACGTcount: A:0.73, C:0.01, G:0.03, T:0.23
Consensus pattern (11 bp):
AAAATTAAAAT
Found at i:66837576 original size:21 final size:20
Alignment explanation
Indices: 66837552--66837662 Score: 98
Period size: 21 Copynumber: 5.3 Consensus size: 20
66837542 AAAAAATTAA
*
66837552 AATAAAATAAAGTAAATAACT
1 AATAAAATAAAATAAATAA-T
*
66837573 AATAAAATAAAATAATTAATT
1 AATAAAATAAAATAAATAA-T
* * *
66837594 AATAAGATATAATAAAAAAT
1 AATAAAATAAAATAAATAAT
*
66837614 AAAAAAATAAAATAAAATAA-
1 AATAAAATAAAAT-AAATAAT
* *
66837634 AATGAAAATAAAATTAAAGAAA
1 AAT-AAAATAAAA-TAAATAAT
66837656 AATAAAA
1 AATAAAA
66837663 ATTGGGTTGT
Statistics
Matches: 73, Mismatches: 13, Indels: 8
0.78 0.14 0.09
Matches are distributed among these distances:
20 13 0.18
21 56 0.77
22 4 0.05
ACGTcount: A:0.73, C:0.01, G:0.04, T:0.23
Consensus pattern (20 bp):
AATAAAATAAAATAAATAAT
Found at i:66837641 original size:16 final size:16
Alignment explanation
Indices: 66837609--66837662 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 16
66837599 GATATAATAA
66837609 AAAAT-AAA-AAAAT-
1 AAAATAAAATAAAATG
66837622 AAAATAAAATAAAATG
1 AAAATAAAATAAAATG
*
66837638 AAAATAAAATTAAA-G
1 AAAATAAAATAAAATG
66837653 AAAAATAAAA
1 -AAAATAAAA
66837663 ATTGGGTTGT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
13 5 0.14
14 3 0.08
15 6 0.17
16 22 0.61
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.17
Consensus pattern (16 bp):
AAAATAAAATAAAATG
Found at i:66837644 original size:46 final size:44
Alignment explanation
Indices: 66837573--66837663 Score: 105
Period size: 46 Copynumber: 2.0 Consensus size: 44
66837563 GTAAATAACT
* *
66837573 AATAAAATAAAATAATTAATTAATAAGATATAATA-AAAAATAAAAA
1 AATAAAATAAAATAA-TAATAAATAAAAT-TAA-AGAAAAATAAAAA
66837619 AATAAAATAAAATAA-AATGAAAATAAAATTAAAGAAAAATAAAAA
1 AATAAAATAAAATAATAAT--AAATAAAATTAAAGAAAAATAAAAA
66837664 TTGGGTTGTC
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
44 4 0.10
45 14 0.35
46 22 0.55
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (44 bp):
AATAAAATAAAATAATAATAAATAAAATTAAAGAAAAATAAAAA
Found at i:66843286 original size:54 final size:54
Alignment explanation
Indices: 66843222--66843336 Score: 187
Period size: 54 Copynumber: 2.1 Consensus size: 54
66843212 CTCTTCGAAA
*
66843222 CCATAGCCCAGCTATGGTCTTATACGAAAATCAG-ATGACCACGTCACATCGATG
1 CCATAGCCCAGCTATGGTCTTATACGAAAATC-GCATGACCACATCACATCGATG
* *
66843276 CCATAGCCCAGCTATGGTCTTATACGAAAATCGCATGATCACATCACATTGATG
1 CCATAGCCCAGCTATGGTCTTATACGAAAATCGCATGACCACATCACATCGATG
66843330 CCATAGC
1 CCATAGC
66843337 TATGGTCTTA
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
53 1 0.02
54 56 0.98
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.23
Consensus pattern (54 bp):
CCATAGCCCAGCTATGGTCTTATACGAAAATCGCATGACCACATCACATCGATG
Found at i:66843340 original size:49 final size:50
Alignment explanation
Indices: 66843230--66843367 Score: 165
Period size: 54 Copynumber: 2.7 Consensus size: 50
66843220 AACCATAGCC
* *
66843230 CAGCTATGGTCTTATACGAAAATCAG-ATGACCACGTCACATCGATGCCAT
1 CAGCTATGGTCTTATACGAAAATC-GCATGATCACATCACATCGATGCCAT
*
66843280 AGCCCAGCTATGGTCTTATACGAAAATCGCATGATCACATCACATTGATGCCAT
1 ----CAGCTATGGTCTTATACGAAAATCGCATGATCACATCACATCGATGCCAT
* *
66843334 -AGCTATGGTCTTATACAAAAATCACAT-ATCACAT
1 CAGCTATGGTCTTATACGAAAATCGCATGATCACAT
66843368 GTTGCCATGG
Statistics
Matches: 78, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
48 7 0.09
49 25 0.32
53 1 0.01
54 45 0.58
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (50 bp):
CAGCTATGGTCTTATACGAAAATCGCATGATCACATCACATCGATGCCAT
Found at i:66848082 original size:40 final size:40
Alignment explanation
Indices: 66847988--66848212 Score: 258
Period size: 40 Copynumber: 5.6 Consensus size: 40
66847978 TATTCGAATG
*
66847988 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
66848029 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
66848069 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
66848109 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
66848149 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
66848189 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
66848213 CTTGTGCAAG
Statistics
Matches: 158, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 1 0.01
40 127 0.80
41 29 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:66848168 original size:80 final size:80
Alignment explanation
Indices: 66847988--66848248 Score: 312
Period size: 80 Copynumber: 3.3 Consensus size: 80
66847978 TATTCGAATG
* * * *
66847988 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
66848053 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * *
66848069 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
66848134 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * *
66848149 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
66848214 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
66848228 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
66848249 ATTACTTGAG
Statistics
Matches: 155, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 95 0.61
81 32 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:66848202 original size:120 final size:120
Alignment explanation
Indices: 66847988--66848248 Score: 325
Period size: 120 Copynumber: 2.2 Consensus size: 120
66847978 TATTCGAATG
* * *
66847988 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * * *
66848053 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * *
66848109 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * *
66848172 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
66848228 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
66848249 ATTACTTGAG
Statistics
Matches: 122, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
118 15 0.12
119 19 0.16
120 57 0.47
121 31 0.25
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:66851083 original size:46 final size:46
Alignment explanation
Indices: 66851008--66851198 Score: 175
Period size: 47 Copynumber: 3.9 Consensus size: 46
66850998 TGCACATAGT
* * ** * *
66851008 CACATATTACACACCGAAGCCATAGCCCAGCCATGGTCTTACACGGAT
1 CACATA-T-CACACCGATGCCATATCCCAGATATGGTCTTATACGGAG
* *
66851056 CACATATCACACTGATGCCATATCCCAGATATGGTCTTATACAGTAG
1 CACATATCACACCGATGCCATATCCCAGATATGGTCTTATAC-GGAG
* *
66851103 CACATATCACGCCGATGCCATATCCCAAATATGGTCTTATACGGAAG
1 CACATATCACACCGATGCCATATCCCAGATATGGTCTTATACGG-AG
* * *
66851150 CACATAATCACATCTCTCTGATGCCATAGCCAAGCTATGGTCTTATACG
1 CACAT-ATCACA---C-C-GATGCCATATCCCAGATATGGTCTTATACG
66851199 AAAATCACAT
Statistics
Matches: 118, Mismatches: 17, Indels: 11
0.81 0.12 0.08
Matches are distributed among these distances:
46 30 0.25
47 49 0.42
48 11 0.09
51 1 0.01
52 1 0.01
53 26 0.22
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.25
Consensus pattern (46 bp):
CACATATCACACCGATGCCATATCCCAGATATGGTCTTATACGGAG
Found at i:66851123 original size:47 final size:47
Alignment explanation
Indices: 66850990--66851161 Score: 168
Period size: 47 Copynumber: 3.6 Consensus size: 47
66850980 ATAGTAAAAC
* * * *
66850990 TATGGTCTTGCACA-TAGTCACATATTACACACCGAAGCCATAGCCCAGC
1 TATGGTCTTACACAGTAG-CACATA-T-CACACCGATGCCATATCCCAGA
* * * *
66851039 CATGGTCTTACAC-GGATCACATATCACACTGATGCCATATCCCAGA
1 TATGGTCTTACACAGTAGCACATATCACACCGATGCCATATCCCAGA
* * *
66851085 TATGGTCTTATACAGTAGCACATATCACGCCGATGCCATATCCCAAA
1 TATGGTCTTACACAGTAGCACATATCACACCGATGCCATATCCCAGA
* * *
66851132 TATGGTCTTATACGGAAGCACATAATCACA
1 TATGGTCTTACACAGTAGCACAT-ATCACA
66851162 TCTCTCTGAT
Statistics
Matches: 102, Mismatches: 18, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
46 29 0.28
47 50 0.49
48 11 0.11
49 12 0.12
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (47 bp):
TATGGTCTTACACAGTAGCACATATCACACCGATGCCATATCCCAGA
Found at i:66851189 original size:53 final size:51
Alignment explanation
Indices: 66851008--66851322 Score: 174
Period size: 53 Copynumber: 6.2 Consensus size: 51
66850998 TGCACATAGT
* * * ** * *
66851008 CACATATTACA-CAC-CGAAGCCATAGCCCAGCCATGGTCTTACACGG-AT
1 CACATATCACATCACTCGATGCCATAGCCAAGATATGGTCTTATACGGAAG
* * * *
66851056 CACATAT--CA-CACT-GATGCCATATCCCAGATATGGTCTTATACAGTAG
1 CACATATCACATCACTCGATGCCATAGCCAAGATATGGTCTTATACGGAAG
* *
66851103 CACATAT--CA-CGC-CGATGCCATATCCCAA-ATATGGTCTTATACGGAAG
1 CACATATCACATCACTCGATGCCATA-GCCAAGATATGGTCTTATACGGAAG
* * * *
66851150 CACATAATCACATCTCTCTGATGCCATAGCCAAGCTATGGTCTTATACGAAAAT
1 CACAT-ATCACATCACTC-GATGCCATAGCCAAGATATGGTCTTATACG-GAAG
* * * * *
66851204 CACATGATCACGTCACATCGATGCCATAGCCCAGTTAT-GTCTTATACGAAAAT
1 CACAT-ATCACATCAC-TCGATGCCATAGCCAAGATATGGTCTTATACG-GAAG
* * * * *
66851257 CGCATGATCACGTCACATCGATGCCATAG-CATA-ACTATGGTCTTATGCGAAAAT
1 CACAT-ATCACATCAC-TCGATGCCATAGCCA-AGA-TATGGTCTTATACG-GAAG
66851311 CACATATCACAT
1 CACATATCACAT
66851323 GTTGCCATGG
Statistics
Matches: 223, Mismatches: 28, Indels: 27
0.80 0.10 0.10
Matches are distributed among these distances:
46 30 0.13
47 43 0.19
48 12 0.05
50 2 0.01
51 2 0.01
52 6 0.03
53 76 0.34
54 50 0.22
55 2 0.01
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.25
Consensus pattern (51 bp):
CACATATCACATCACTCGATGCCATAGCCAAGATATGGTCTTATACGGAAG
Found at i:66851230 original size:54 final size:54
Alignment explanation
Indices: 66851115--66851320 Score: 235
Period size: 53 Copynumber: 3.9 Consensus size: 54
66851105 CATATCACGC
* * * * * * *
66851115 CGATGCCATATCCCAA-ATATGGTCTTATACG-GAAGCACATAATCACATCTC-T
1 CGATGCCATA-GCCAAGCTATGGTCTTATACGAAAATCACATGATCACGTCACAT
66851167 CTGATGCCATAGCCAAGCTATGGTCTTATACGAAAATCACATGATCACGTCACAT
1 C-GATGCCATAGCCAAGCTATGGTCTTATACGAAAATCACATGATCACGTCACAT
* * *
66851222 CGATGCCATAGCCCAGTTAT-GTCTTATACGAAAATCGCATGATCACGTCACAT
1 CGATGCCATAGCCAAGCTATGGTCTTATACGAAAATCACATGATCACGTCACAT
* *
66851275 CGATGCCATAG-CATAACTATGGTCTTATGCGAAAATCACAT-ATCAC
1 CGATGCCATAGCCA-AGCTATGGTCTTATACGAAAATCACATGATCAC
66851321 ATGTTGCCAT
Statistics
Matches: 133, Mismatches: 15, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
52 6 0.05
53 75 0.56
54 50 0.38
55 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.26
Consensus pattern (54 bp):
CGATGCCATAGCCAAGCTATGGTCTTATACGAAAATCACATGATCACGTCACAT
Found at i:66873636 original size:40 final size:40
Alignment explanation
Indices: 66873583--66873854 Score: 445
Period size: 40 Copynumber: 6.8 Consensus size: 40
66873573 CAGCCGCAAA
* * * *
66873583 CATATTTGCCTTCGGGTCTTAACCCGGACATATGAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
66873623 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCATCCCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
66873663 CATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
66873703 CATAATTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
66873743 CATAATTGCCTTCGGGTCATAACCCGGATATATCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
66873783 CATAATTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
66873823 CATAATTGCCTTCGGGTCTTAGCCCGGATATA
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATA
66873855 ATCCAATGTT
Statistics
Matches: 214, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 214 1.00
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (40 bp):
CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
Found at i:66878219 original size:44 final size:44
Alignment explanation
Indices: 66878151--66878238 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
66878141 CCGTCCACTC
*
66878151 GAACTTAACATCCTTTTGAAGTAGCTTCGTCATTGGTGTAGCTA
1 GAACCTAACATCCTTTTGAAGTAGCTTCGTCATTGGTGTAGCTA
*
66878195 GAACCTAACATCCTTTTGAAGTAGCTTCGTCATTGGTGTGGCTA
1 GAACCTAACATCCTTTTGAAGTAGCTTCGTCATTGGTGTAGCTA
66878239 TCATCGAGAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (44 bp):
GAACCTAACATCCTTTTGAAGTAGCTTCGTCATTGGTGTAGCTA
Found at i:66896232 original size:57 final size:57
Alignment explanation
Indices: 66896144--66896256 Score: 217
Period size: 57 Copynumber: 2.0 Consensus size: 57
66896134 TGGTGAAATG
*
66896144 CAATGTTAATATTTAGTTGCTAGTATTTATATGTGTGTTAGCCGAATTTGAACTTGT
1 CAATGCTAATATTTAGTTGCTAGTATTTATATGTGTGTTAGCCGAATTTGAACTTGT
66896201 CAATGCTAATATTTAGTTGCTAGTATTTATATGTGTGTTAGCCGAATTTGAACTTG
1 CAATGCTAATATTTAGTTGCTAGTATTTATATGTGTGTTAGCCGAATTTGAACTTG
66896257 AATAATGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.27, C:0.10, G:0.19, T:0.44
Consensus pattern (57 bp):
CAATGCTAATATTTAGTTGCTAGTATTTATATGTGTGTTAGCCGAATTTGAACTTGT
Found at i:66897601 original size:38 final size:38
Alignment explanation
Indices: 66897559--66897697 Score: 174
Period size: 38 Copynumber: 3.7 Consensus size: 38
66897549 TTAAAGACTT
*
66897559 GCAGGCTAT-GTGCTGGAATTATATTCGGGTTAAATCCC
1 GCAGGCT-TCGTGCTGGAATTATATCCGGGTTAAATCCC
*
66897597 GCAGGCTTCATGCTGGTAA-TATATCCGGGTTAAATCCC
1 GCAGGCTTCGTGCTGG-AATTATATCCGGGTTAAATCCC
* *
66897635 GTAGGCTTCGTGCTGGAATTATGTCCGGGTTAAATCCC
1 GCAGGCTTCGTGCTGGAATTATATCCGGGTTAAATCCC
* * * *
66897673 GCAGGCCTAGTGCTAGTATTATATC
1 GCAGGCTTCGTGCTGGAATTATATC
66897698 TGAGCTTAAA
Statistics
Matches: 87, Mismatches: 11, Indels: 6
0.84 0.11 0.06
Matches are distributed among these distances:
37 3 0.03
38 82 0.94
39 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (38 bp):
GCAGGCTTCGTGCTGGAATTATATCCGGGTTAAATCCC
Found at i:66897696 original size:76 final size:78
Alignment explanation
Indices: 66897568--66897726 Score: 207
Period size: 76 Copynumber: 2.1 Consensus size: 78
66897558 TGCAGGCTAT
* * * *
66897568 GTGCTGGAATTATATTCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATATATCCG-GGTTAAA-
1 GTGCTGGAATTATATCCGGGTTAAATCCCGCAGGCCTCATGCTAGTAATATATCCGAGCTTAAAG
*
66897631 TCCCGTAGGCTTC
66 TCCCGTAGGCTTA
* * *
66897644 GTGCTGGAATTATGTCCGGGTTAAATCCCGCAGGCCT-AGTGCTAGTATTATATCTGAGCTTAAA
1 GTGCTGGAATTATATCCGGGTTAAATCCCGCAGGCCTCA-TGCTAGTAATATATCCGAGCTTAAA
*
66897708 GTCCCGTGGGCTTA
65 GTCCCGTAGGCTTA
66897722 GTGCT
1 GTGCT
66897727 AGTGACTGGA
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
75 1 0.01
76 48 0.68
77 6 0.08
78 16 0.23
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.31
Consensus pattern (78 bp):
GTGCTGGAATTATATCCGGGTTAAATCCCGCAGGCCTCATGCTAGTAATATATCCGAGCTTAAAG
TCCCGTAGGCTTA
Found at i:66898706 original size:260 final size:261
Alignment explanation
Indices: 66898221--66898740 Score: 1006
Period size: 260 Copynumber: 2.0 Consensus size: 261
66898211 CTAAGCCTCA
*
66898221 AAAGCTTACTCAATTCCTTATTTCTCTGTTTTATAGATTGTTGCTTTTGGCCACCGACTCGGGGA
1 AAAGCTTACTCAATTCCTTATTTCTCTGTTTTATAGATTGTTGATTTTGGCCACCGACTCGGGGA
66898286 TCGTCAGCAGTTCATCATACTATCGACCTTTTTGGTACAGTTATATTTTGGTCTAGATGTGGCAT
66 TCGTCAGCAGTTCATCATACTATCGACCTTTTTGGTACAGTTATATTTTGGTCTAGATGTGGCAT
66898351 GTTTAGGTTAGACTGTTGATAACTATGTTTTGTAACTGTAAATATTTTGGCCATATGAAAATGGC
131 GTTTAGGTTAGACTGTTGATAACTATGTTTTGTAACTGTAAATATTTTGGCCATATGAAAATGGC
66898416 ATTTATAACTTAAAAACCAATATGTATTGAGTTCAATCTCTGTTTTTGTTGATTGATAATGTGAA
196 ATTTATAACTTAAAAACCAATATGTATTGAGTTCAATCTCTGTTTTTGTTGATTGATAATGTGAA
66898481 G
261 G
* *
66898482 AAAGCTTACTCGATTTCTTATTT-TCTGTTTTATAGATTGTTGATTTTGGCCACCGACTCGGGGA
1 AAAGCTTACTCAATTCCTTATTTCTCTGTTTTATAGATTGTTGATTTTGGCCACCGACTCGGGGA
66898546 TCGTCAGCAGTTCATCATACTATCGACCTTTTTGGTACAGTTATATTTTGGTCTAGATGTGGCAT
66 TCGTCAGCAGTTCATCATACTATCGACCTTTTTGGTACAGTTATATTTTGGTCTAGATGTGGCAT
66898611 GTTTAGGTTAGACTGTTGATAACTATGTTTTGTAACTGTAAATATTTTGGCCATATGAAAATGGC
131 GTTTAGGTTAGACTGTTGATAACTATGTTTTGTAACTGTAAATATTTTGGCCATATGAAAATGGC
66898676 ATTTATAACTTAAAAACCAATATGTATTGAGTTCAATCTCTGTTTTTGTTGATTGATAATGTGAA
196 ATTTATAACTTAAAAACCAATATGTATTGAGTTCAATCTCTGTTTTTGTTGATTGATAATGTGAA
66898741 TGAGAAATTC
Statistics
Matches: 256, Mismatches: 3, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
260 235 0.92
261 21 0.08
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.41
Consensus pattern (261 bp):
AAAGCTTACTCAATTCCTTATTTCTCTGTTTTATAGATTGTTGATTTTGGCCACCGACTCGGGGA
TCGTCAGCAGTTCATCATACTATCGACCTTTTTGGTACAGTTATATTTTGGTCTAGATGTGGCAT
GTTTAGGTTAGACTGTTGATAACTATGTTTTGTAACTGTAAATATTTTGGCCATATGAAAATGGC
ATTTATAACTTAAAAACCAATATGTATTGAGTTCAATCTCTGTTTTTGTTGATTGATAATGTGAA
G
Found at i:66898772 original size:46 final size:46
Alignment explanation
Indices: 66898705--66898795 Score: 164
Period size: 46 Copynumber: 2.0 Consensus size: 46
66898695 ATATGTATTG
66898705 AGTTCAATCTCTGTTTTTGTTGATTGATAATGTGAATGAGAAATTC
1 AGTTCAATCTCTGTTTTTGTTGATTGATAATGTGAATGAGAAATTC
* *
66898751 AGTTCGATCTCTGTTTTTGTTGATTGATTATGTGAATGAGAAATT
1 AGTTCAATCTCTGTTTTTGTTGATTGATAATGTGAATGAGAAATT
66898796 TAATGTTTAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.45
Consensus pattern (46 bp):
AGTTCAATCTCTGTTTTTGTTGATTGATAATGTGAATGAGAAATTC
Found at i:66905379 original size:38 final size:38
Alignment explanation
Indices: 66905337--66905475 Score: 174
Period size: 38 Copynumber: 3.7 Consensus size: 38
66905327 TTAAAGACTT
*
66905337 GCAGGCTAT-GTGCTGGAATTATATTCGGGTTAAATCCC
1 GCAGGCT-TCGTGCTGGAATTATATCCGGGTTAAATCCC
*
66905375 GCAGGCTTCATGCTGGTAA-TATATCCGGGTTAAATCCC
1 GCAGGCTTCGTGCTGG-AATTATATCCGGGTTAAATCCC
* *
66905413 GTAGGCTTCGTGCTGGAATTATGTCCGGGTTAAATCCC
1 GCAGGCTTCGTGCTGGAATTATATCCGGGTTAAATCCC
* * * *
66905451 GCAGGCCTAGTGCTAGTATTATATC
1 GCAGGCTTCGTGCTGGAATTATATC
66905476 TGAGCTTAAA
Statistics
Matches: 87, Mismatches: 11, Indels: 6
0.84 0.11 0.06
Matches are distributed among these distances:
37 3 0.03
38 82 0.94
39 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (38 bp):
GCAGGCTTCGTGCTGGAATTATATCCGGGTTAAATCCC
Found at i:66905474 original size:76 final size:78
Alignment explanation
Indices: 66905346--66905504 Score: 207
Period size: 76 Copynumber: 2.1 Consensus size: 78
66905336 TGCAGGCTAT
* * * *
66905346 GTGCTGGAATTATATTCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATATATCCG-GGTTAAA-
1 GTGCTGGAATTATATCCGGGTTAAATCCCGCAGGCCTCATGCTAGTAATATATCCGAGCTTAAAG
*
66905409 TCCCGTAGGCTTC
66 TCCCGTAGGCTTA
* * *
66905422 GTGCTGGAATTATGTCCGGGTTAAATCCCGCAGGCCT-AGTGCTAGTATTATATCTGAGCTTAAA
1 GTGCTGGAATTATATCCGGGTTAAATCCCGCAGGCCTCA-TGCTAGTAATATATCCGAGCTTAAA
*
66905486 GTCCCGTGGGCTTA
65 GTCCCGTAGGCTTA
66905500 GTGCT
1 GTGCT
66905505 AGTGACTGGA
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
75 1 0.01
76 48 0.68
77 6 0.08
78 16 0.23
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.31
Consensus pattern (78 bp):
GTGCTGGAATTATATCCGGGTTAAATCCCGCAGGCCTCATGCTAGTAATATATCCGAGCTTAAAG
TCCCGTAGGCTTA
Found at i:66905678 original size:38 final size:38
Alignment explanation
Indices: 66905636--66905775 Score: 178
Period size: 38 Copynumber: 3.7 Consensus size: 38
66905626 CTTAAAGACT
66905636 CGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCC
1 CGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCC
* *
66905674 CGCAGGTTTTATGCTGGTAA-TATATCCGGGTTAAATCC
1 CGCAGGCTATATGCTGG-AATTATATCCGGGTTAAATCC
* *
66905712 CGCAGGCT-TCGTGCTGGAATTATGTCCGGGTTAAATCC
1 CGCAGGCTAT-ATGCTGGAATTATATCCGGGTTAAATCC
* *
66905750 CGCAGGCCTA-GTGCTGGTATTATATC
1 CGCAGG-CTATATGCTGGAATTATATC
66905776 TGAGCTTAAA
Statistics
Matches: 90, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
37 3 0.03
38 83 0.92
39 4 0.04
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (38 bp):
CGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCC
Found at i:66905765 original size:76 final size:78
Alignment explanation
Indices: 66905638--66905804 Score: 216
Period size: 76 Copynumber: 2.2 Consensus size: 78
66905628 TAAAGACTCG
**
66905638 CAGGCTATA-TGCTGGAATTATATCCGGGTTAAATCCCGCAGGTTTTATGCTGGTAATATATCCG
1 CAGGCT-TAGTGCTGGAATTATATCCGGGTTAAATCCCGCAGGTCCTATGCTGGTAATATATCCG
* *
66905702 -GGTTAAA-TCCCG
65 AGCTTAAAGTCCCA
* * * *
66905714 CAGGCTTCGTGCTGGAATTATGTCCGGGTTAAATCCCGCAGG-CCTAGTGCTGGTATTATATCTG
1 CAGGCTTAGTGCTGGAATTATATCCGGGTTAAATCCCGCAGGTCCTA-TGCTGGTAATATATCCG
66905778 AGCTTAAAGTCCCA
65 AGCTTAAAGTCCCA
66905792 CAGGCTTAGTGCT
1 CAGGCTTAGTGCT
66905805 AATGACTGGA
Statistics
Matches: 78, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
75 3 0.04
76 53 0.68
77 6 0.08
78 16 0.21
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.31
Consensus pattern (78 bp):
CAGGCTTAGTGCTGGAATTATATCCGGGTTAAATCCCGCAGGTCCTATGCTGGTAATATATCCGA
GCTTAAAGTCCCA
Found at i:66905865 original size:300 final size:300
Alignment explanation
Indices: 66905323--66905921 Score: 1054
Period size: 300 Copynumber: 2.0 Consensus size: 300
66905313 ATGTGTATCC
* * *
66905323 GGGCTTAAAGACTTGCAGGCTATGTGCTGGAATTATATTCGGGTTAAATCCCGCAGGCTTCATGC
1 GGGCTTAAAGACTCGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCATGC
*
66905388 TGGTAATATATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGAATTATGTCCGGGTTAAATCCCGC
66 TGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTATGTCCGGGTTAAATCCCGC
*** *
66905453 AGGCCTAGTGCTAGTATTATATCTGAGCTTAAAGTCCCGTGGGCTTAGTGCTAGTGACTGGACTC
131 AGGCCTAGTGCTAGTATTATATCTGAGCTTAAAGTCCCACAGGCTTAGTGCTAATGACTGGACTC
* *
66905518 GGGTTTTAAAACCTAGCAGGCTCAACACCGGTGATTCGAGTAAGATTATGAATTCAAATGTTCGA
196 GAGTTTTAAAACCTAGCAGGCTCAACACCGGTGATTCGAGAAAGATTATGAATTCAAATGTTCGA
66905583 GGTAAACTACTATTGATTATGTATGATACATTATGATGGT
261 GGTAAACTACTATTGATTATGTATGATACATTATGATGGT
* *
66905623 GGGCTTAAAGACTCGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGCAGGTTTTATGC
1 GGGCTTAAAGACTCGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCATGC
66905688 TGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTATGTCCGGGTTAAATCCCGC
66 TGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTATGTCCGGGTTAAATCCCGC
*
66905753 AGGCCTAGTGCTGGTATTATATCTGAGCTTAAAGTCCCACAGGCTTAGTGCTAATGACTGGACTC
131 AGGCCTAGTGCTAGTATTATATCTGAGCTTAAAGTCCCACAGGCTTAGTGCTAATGACTGGACTC
* * *
66905818 GAGTTTTATAACCTAGCAGGCTCAACGCCGGTGATTCGAGAAAGATTATGAATTCGAATGTTCGA
196 GAGTTTTAAAACCTAGCAGGCTCAACACCGGTGATTCGAGAAAGATTATGAATTCAAATGTTCGA
66905883 GGTAAACTACTATTGATTATGTATGATACATTATGATGG
261 GGTAAACTACTATTGATTATGTATGATACATTATGATGG
66905922 CCAGGTACGT
Statistics
Matches: 283, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
300 283 1.00
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (300 bp):
GGGCTTAAAGACTCGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCATGC
TGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTATGTCCGGGTTAAATCCCGC
AGGCCTAGTGCTAGTATTATATCTGAGCTTAAAGTCCCACAGGCTTAGTGCTAATGACTGGACTC
GAGTTTTAAAACCTAGCAGGCTCAACACCGGTGATTCGAGAAAGATTATGAATTCAAATGTTCGA
GGTAAACTACTATTGATTATGTATGATACATTATGATGGT
Found at i:66912347 original size:37 final size:36
Alignment explanation
Indices: 66912293--66912369 Score: 118
Period size: 37 Copynumber: 2.1 Consensus size: 36
66912283 ATTCCTCGCT
**
66912293 TCCTTTGACTCTGACACTCCTCCCCTTCATCTAGCG
1 TCCTTTGACTCCAACACTCCTCCCCTTCATCTAGCG
*
66912329 TCCTTTCGACTCCAACACTCCTCCCTTTCATCTAGCG
1 TCCTTT-GACTCCAACACTCCTCCCCTTCATCTAGCG
66912366 TCCT
1 TCCT
66912370 CTAGGTAAAC
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 6 0.16
37 31 0.84
ACGTcount: A:0.14, C:0.43, G:0.09, T:0.34
Consensus pattern (36 bp):
TCCTTTGACTCCAACACTCCTCCCCTTCATCTAGCG
Found at i:66921081 original size:435 final size:436
Alignment explanation
Indices: 66920216--66921093 Score: 1244
Period size: 435 Copynumber: 2.0 Consensus size: 436
66920206 AAATAAAATA
* * * **
66920216 AAAATTTGTATTTATACTTTGGATTCAATGGTATGGATGACACACGCATCAAAAAAACAAGGGAC
1 AAAAGTTGTATTTATACTTAGGATTCAAGGGTATGGATGACACACAAAT-AAAAAAACAAGGGAC
* * *
66920281 TTTGCAAATTTTAATTATTTCGCAAGGGAAGGGATTCAAACTTGGGACCTCATTTAATTTCCATA
65 TTTGCAAATTTTAATTATTTCACAAAGGAAAGGATTCAAACTTGGGACCTCATTTAATTTCCATA
* *
66920346 TTTTCTCATATTTCTTTTAACCATTAGGATTTTTCCTCATTCTTAAAATAATTTTTCAATAATTA
130 CTTTCTCATATTTCTTTTAACCATTAGGATTTTTCCTCATTCTTAAAATAATTTTGCAATAATTA
* *
66920411 TTTTAAAAACAAGACATGTCACATACTAGGGTTTAAGAAAAAAATTTGCAAAATAATAAAAATCA
195 TTTTAAAAACAAGACATGTCACATACTAGGCTTTAAGAAAAAAATTTGAAAAATAATAAAAATCA
* * * * *
66920476 TGCGAGAGAATGGATTTAAACTTGGGTTTCAAGAAACGCTTCACTAACACTTAACCAAAAAACCA
260 CGCCAGAGAAGGGATTGAAACTTGGGTTTCAAGAAACACTTCACTAACACTTAACCAAAAAACCA
** *
66920541 TTACCTATTTTATTTCCTAAAAATGCATAGATAATCTAAAAAATTAAGGCATGACAACTCTCTCT
325 ACACCTATTTTATTTCCTAAAAATACATAGATAATCTAAAAAATTAAGGCATGACAACTCTCTCT
*
66920606 TGATTCAAAAACCTGATTCTACTAACCCCCGATTTTTGGGATATTAC
390 CGATTCAAAAACCTGATTCTACTAACCCCCGATTTTTGGGATATTAC
* * * *
66920653 AAAAGTTGTATTTATACTTAGGTTTCAAGGGTATGGATGACACACAAAT-TAAGAACAAGGGATT
1 AAAAGTTGTATTTATACTTAGGATTCAAGGGTATGGATGACACACAAATAAAAAAACAAGGGACT
**
66920717 TTGCAACA-TTTAATTATTTCACAAAGGAAAGTTTTCAAACTTGGGACCTCATTTAATTTCCATA
66 TTGCAA-ATTTTAATTATTTCACAAAGGAAAGGATTCAAACTTGGGACCTCATTTAATTTCCATA
* * * *
66920781 CTTTCTCATGTTTCTTTTAACCATTAGGTTTTTTCCTCATTCTTGAAATAATTTTGCAATATTTA
130 CTTTCTCATATTTCTTTTAACCATTAGGATTTTTCCTCATTCTTAAAATAATTTTGCAATAATTA
* * * *
66920846 TTTTAAAAACAAGGCATGTCACATATTAGGCTTTAAG-ACAAAATTTGAAAAATAATAAAAATGA
195 TTTTAAAAACAAGACATGTCACATACTAGGCTTTAAGAAAAAAATTTGAAAAATAATAAAAATCA
* * * * *
66920910 CGCCAGAGAAGGGATTGGAACTTGGGTTTTAAGAAACATTTCACTAATACTTAACCAACAAACCA
260 CGCCAGAGAAGGGATTGAAACTTGGGTTTCAAGAAACACTTCACTAACACTTAACCAAAAAACCA
* * *
66920975 ACACCTCA-TTTATTTCCTAAAAGTACATAGATAATCTAAAAAGTTAAGGCATGACCACTCTCTC
325 ACACCT-ATTTTATTTCCTAAAAATACATAGATAATCTAAAAAATTAAGGCATGACAACTCTCTC
* ** *
66921039 TCGATTCACAAA-CTCGATTCTACTAACCCTTGATTTTTTGGGATGTTAC
389 TCGATTCAAAAACCT-GATTCTACTAACCCCCGA-TTTTTGGGATATTAC
*
66921088 ATAAGT
1 AAAAGT
66921094 AAAAGCTTGA
Statistics
Matches: 389, Mismatches: 48, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
433 2 0.01
434 161 0.41
435 182 0.47
436 1 0.00
437 43 0.11
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.34
Consensus pattern (436 bp):
AAAAGTTGTATTTATACTTAGGATTCAAGGGTATGGATGACACACAAATAAAAAAACAAGGGACT
TTGCAAATTTTAATTATTTCACAAAGGAAAGGATTCAAACTTGGGACCTCATTTAATTTCCATAC
TTTCTCATATTTCTTTTAACCATTAGGATTTTTCCTCATTCTTAAAATAATTTTGCAATAATTAT
TTTAAAAACAAGACATGTCACATACTAGGCTTTAAGAAAAAAATTTGAAAAATAATAAAAATCAC
GCCAGAGAAGGGATTGAAACTTGGGTTTCAAGAAACACTTCACTAACACTTAACCAAAAAACCAA
CACCTATTTTATTTCCTAAAAATACATAGATAATCTAAAAAATTAAGGCATGACAACTCTCTCTC
GATTCAAAAACCTGATTCTACTAACCCCCGATTTTTGGGATATTAC
Found at i:66923097 original size:23 final size:23
Alignment explanation
Indices: 66923067--66923148 Score: 107
Period size: 23 Copynumber: 3.6 Consensus size: 23
66923057 TAAGCTGATG
66923067 AACAGTAAGCTCTATTGAGCTGA
1 AACAGTAAGCTCTATTGAGCTGA
*
66923090 AACAGTAAGCTCTGA-CGAGCTG-
1 AACAGTAAGCTCT-ATTGAGCTGA
66923112 AACAGTAAGCTC-ATATGAGCTGA
1 AACAGTAAGCTCTAT-TGAGCTGA
66923135 GAACAGTAAGCTCT
1 -AACAGTAAGCTCT
66923149 TACGAGCTGA
Statistics
Matches: 51, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
20 1 0.02
22 18 0.35
23 19 0.37
24 13 0.25
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (23 bp):
AACAGTAAGCTCTATTGAGCTGA
Found at i:66923117 original size:45 final size:46
Alignment explanation
Indices: 66923065--66923158 Score: 156
Period size: 46 Copynumber: 2.1 Consensus size: 46
66923055 CCTAAGCTGA
66923065 TGAACAGTAAGCTC-TATTGAGCTGA-AACAGTAAGCTCTGACGAGC
1 TGAACAGTAAGCTCATA-TGAGCTGAGAACAGTAAGCTCTGACGAGC
*
66923110 TGAACAGTAAGCTCATATGAGCTGAGAACAGTAAGCTCTTACGAGC
1 TGAACAGTAAGCTCATATGAGCTGAGAACAGTAAGCTCTGACGAGC
66923156 TGA
1 TGA
66923159 TATATCGATA
Statistics
Matches: 46, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
45 22 0.48
46 24 0.52
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.22
Consensus pattern (46 bp):
TGAACAGTAAGCTCATATGAGCTGAGAACAGTAAGCTCTGACGAGC
Found at i:66923157 original size:46 final size:45
Alignment explanation
Indices: 66923065--66923158 Score: 154
Period size: 45 Copynumber: 2.1 Consensus size: 45
66923055 CCTAAGCTGA
66923065 TGAACAGTAAGCTCTATTGAGCTGAAACAGTAAGCTCTGACGAGC
1 TGAACAGTAAGCTCTATTGAGCTGAAACAGTAAGCTCTGACGAGC
*
66923110 TGAACAGTAAGCTC-ATATGAGCTGAGAACAGTAAGCTCTTACGAGC
1 TGAACAGTAAGCTCTAT-TGAGCTGA-AACAGTAAGCTCTGACGAGC
66923156 TGA
1 TGA
66923159 TATATCGATA
Statistics
Matches: 46, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
44 2 0.04
45 22 0.48
46 22 0.48
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.22
Consensus pattern (45 bp):
TGAACAGTAAGCTCTATTGAGCTGAAACAGTAAGCTCTGACGAGC
Found at i:66929130 original size:23 final size:22
Alignment explanation
Indices: 66929084--66929147 Score: 62
Period size: 23 Copynumber: 3.0 Consensus size: 22
66929074 TCTTCTTTAC
*
66929084 TATTCTAA-TCTTTTAT-TTAT
1 TATTCTAATTATTTTATCTTAT
*
66929104 TATTCT-ATTTTATTTATCTTAGT
1 TATTCTAATTAT-TTTATCTTA-T
*
66929127 TATTTTAATTATTTTATCTTA
1 TATTCTAATTATTTTATCTTA
66929148 CTTGGATTCG
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
19 1 0.03
20 8 0.22
21 5 0.14
22 3 0.08
23 15 0.42
24 4 0.11
ACGTcount: A:0.25, C:0.08, G:0.02, T:0.66
Consensus pattern (22 bp):
TATTCTAATTATTTTATCTTAT
Found at i:66936675 original size:31 final size:31
Alignment explanation
Indices: 66936634--66936697 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
66936624 CCTTTTCATA
*
66936634 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
66936665 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
66936696 TT
1 TT
66936698 ACTGTAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:66936943 original size:24 final size:24
Alignment explanation
Indices: 66936891--66937198 Score: 464
Period size: 24 Copynumber: 13.0 Consensus size: 24
66936881 GCTTTATCAT
* *
66936891 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* *
66936916 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTG
*
66936940 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
66936963 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
66936987 ATAATTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
66937011 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
66937034 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
66937058 ATAATTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
66937082 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
66937105 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
66937129 ATAATTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
66937153 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
66937176 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
66937199 TCACTTCCTC
Statistics
Matches: 261, Mismatches: 17, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
23 88 0.34
24 161 0.62
25 12 0.05
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:66936967 original size:47 final size:48
Alignment explanation
Indices: 66936891--66937198 Score: 464
Period size: 47 Copynumber: 6.5 Consensus size: 48
66936881 GCTTTATCAT
* * *
66936891 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTG
66936940 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
* * *
66936987 ATAATTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
* *
66937034 ATAACTGGGGCATAAGCCCTTTTGATAATTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
66937082 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
* * *
66937129 ATAATTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
66937176 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
66937199 TCACTTCCTC
Statistics
Matches: 240, Mismatches: 15, Indels: 10
0.91 0.06 0.04
Matches are distributed among these distances:
47 157 0.65
48 71 0.30
49 12 0.05
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
Found at i:66936996 original size:71 final size:71
Alignment explanation
Indices: 66936891--66937198 Score: 546
Period size: 71 Copynumber: 4.3 Consensus size: 71
66936881 GCTTTATCAT
* * * * *
66936891 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTGATAATTGGGGCATAAGCCCTTTTGATAACTGGGGCATAA
66936955 GCCCTTTA
64 GCCCTTTA
66936963 ATAACTGGGGCATAAGCCCTTTTGATAATTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTGATAATTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
66937028 CCTTTA
66 CCTTTA
66937034 ATAACTGGGGCATAAGCCCTTTTGATAATTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTGATAATTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
66937099 CCTTTA
66 CCTTTA
66937105 ATAACTGGGGCATAAGCCCTTTTGATAATTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTGATAATTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
66937170 CCTTTA
66 CCTTTA
66937176 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
66937199 TCACTTCCTC
Statistics
Matches: 230, Mismatches: 5, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
71 218 0.95
72 12 0.05
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTGATAATTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:66937276 original size:20 final size:20
Alignment explanation
Indices: 66937248--66937314 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
66937238 TTATGAATAC
* *
66937248 ATCAAGTGCATATCATACGT
1 ATCATGTGCATATCATACAT
66937268 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
66937288 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
66937308 ACCATGT
1 ATCATGT
66937315 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:66938588 original size:27 final size:27
Alignment explanation
Indices: 66938553--66938632 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
66938543 GGGCATATTC
* *
66938553 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
*
66938580 GTCACTTTACCCTACGGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
*
66938607 ATCACTTTACCCTACAGGGGCTTTAC
1 GTCACTTTACCCTACAGGGGCTTTAC
66938633 AGTCTTTTTA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 46 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:66938728 original size:27 final size:27
Alignment explanation
Indices: 66938698--66938783 Score: 86
Period size: 27 Copynumber: 3.1 Consensus size: 27
66938688 GTAAATCTAC
66938698 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTATTTCTA-TAATTTTGT
*
66938725 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAAAGGTATTTCTATAATTTTGT
* * *
66938751 AGAAAGTCAAGGGTATTTCTATAACTTTGT
1 --AAA-CCAAAGGTATTTCTATAATTTTGT
66938781 AAA
1 AAA
66938784 TCAGGGGTAT
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
26 1 0.02
27 22 0.44
28 7 0.14
29 19 0.38
30 1 0.02
ACGTcount: A:0.37, C:0.10, G:0.14, T:0.38
Consensus pattern (27 bp):
AAACCAAAGGTATTTCTATAATTTTGT
Found at i:66938811 original size:27 final size:27
Alignment explanation
Indices: 66938781--66938943 Score: 161
Period size: 27 Copynumber: 6.0 Consensus size: 27
66938771 ATAACTTTGT
66938781 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
* * *
66938808 AAAT-TGAGGGTATTTCGGTAATTTCAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
* * *
66938835 AAACCAGTGGTATTTTAGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
*
66938862 AAA-CTAGGGGTATTTCGGTAATTTTAC
1 AAATC-AGGGGTATTTTGGTAATTTTAC
* *
66938889 AAAT-TGAGGGTATTTTTGTAATTTTAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
* * * *
66938916 AAACCAAGGGTATTTTAGCAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
66938943 A
1 A
66938944 GACTAGGGTT
Statistics
Matches: 110, Mismatches: 20, Indels: 12
0.77 0.14 0.08
Matches are distributed among these distances:
26 3 0.03
27 106 0.96
28 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
AAATCAGGGGTATTTTGGTAATTTTAC
Found at i:66938847 original size:54 final size:54
Alignment explanation
Indices: 66938788--66938965 Score: 184
Period size: 54 Copynumber: 3.3 Consensus size: 54
66938778 TGTAAATCAG
* *
66938788 GGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGTAATTTCACAAA-CCA
1 GGGTATTTTAGTAATTTTACAAACTAG-GGGTATTTCGGTAATTTCACAAATCCA
* **
66938841 GTGGTATTTTAGTAATTTTACAAACTAGGGGTATTTCGGTAATTTTACAAATTGA
1 G-GGTATTTTAGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAATCCA
* * * ** * * * *
66938896 GGGTATTTTTGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAGA-CTA
1 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAATCCA
66938949 GGGT-TTTTAGTAATTTT
1 GGGTATTTTAGTAATTTT
66938966 GTAAATCGAG
Statistics
Matches: 107, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
52 12 0.11
53 6 0.06
54 85 0.79
55 4 0.04
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.42
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAATCCA
Found at i:66938882 original size:81 final size:81
Alignment explanation
Indices: 66938786--66938951 Score: 262
Period size: 81 Copynumber: 2.0 Consensus size: 81
66938776 TTTGTAAATC
*
66938786 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACC-AGTGGTATTT
1 AGGGGTATTTCGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAG-GGTATTT
*
66938850 TAGTAATTTTACAAACT
65 TAGCAATTTTACAAACT
** *
66938867 AGGGGTATTTCGGTAATTTTACAAATTGAGGGTATTTTTGTAATTTTACAAACCAAGGGTATTTT
1 AGGGGTATTTCGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTTT
*
66938932 AGCAATTTTACAGACT
66 AGCAATTTTACAAACT
66938948 AGGG
1 AGGG
66938952 TTTTTAGTAA
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
81 76 0.97
82 2 0.03
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (81 bp):
AGGGGTATTTCGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTTT
AGCAATTTTACAAACT
Found at i:66938989 original size:27 final size:27
Alignment explanation
Indices: 66938958--66939187 Score: 280
Period size: 27 Copynumber: 8.5 Consensus size: 27
66938948 AGGGTTTTTA
* *
66938958 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
66938985 GTAATTCTATAAATCAAGGGTTAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
66939012 GTAATTCTATAAATCAAGGGTAACACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
66939039 GTACTTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
66939066 GTAATTCTGTAAGTCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
66939093 GTAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
66939120 GTAATTATGTAAATCGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
66939147 GTAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
66939174 GTAATTCTGTAAAT
1 GTAATTCTGTAAAT
66939188 TGGGGGTACT
Statistics
Matches: 183, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 183 1.00
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:66939003 original size:79 final size:81
Alignment explanation
Indices: 66938786--66939005 Score: 196
Period size: 81 Copynumber: 2.7 Consensus size: 81
66938776 TTTGTAAATC
** * *** *
66938786 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATT-TCACAAACC-AGTGGTATT
1 AGGGGTATTTCAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCT-ACAAACCAAG-GGTATT
*
66938849 TTAGTAATTTTACAAACT
64 TTAGCAATTTTACAAACT
* * ***** *
66938867 AGGGGTATTTCGGTAATTTTACAAATTGAGGGTATTTTTGTAATTTTACAAACCAAGGGTATTTT
1 AGGGGTATTTCAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTACAAACCAAGGGTATTTT
*
66938932 AGCAATTTTACAGACT
66 AGCAATTTTACAAACT
* ** * *
66938948 A-GGGT-TTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGT
1 AGGGGTATTTCAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTACAAACCAAGGGT
66939006 TAAACAGTAA
Statistics
Matches: 119, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
79 40 0.34
80 4 0.03
81 72 0.61
82 3 0.03
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.38
Consensus pattern (81 bp):
AGGGGTATTTCAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTACAAACCAAGGGTATTTT
AGCAATTTTACAAACT
Found at i:66939222 original size:27 final size:27
Alignment explanation
Indices: 66939201--66939290 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
66939191 GGGTACTTTG
*
66939201 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
66939228 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
66939255 GTATTTTTACAAA-CTAAGCGTATTTCG
1 GTAATTTTACAAATCGAAG-GTATTTCA
66939282 GTAATTTTA
1 GTAATTTTA
66939291 GGAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 3 0.05
27 52 0.95
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:66939304 original size:27 final size:27
Alignment explanation
Indices: 66939201--66939305 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
66939191 GGGTACTTTG
* *
66939201 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
66939228 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
66939255 GTATTTTTACAAACTAAGCGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
66939282 GTAATTTTAGGAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
66939306 CTAAATAGGG
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
26 2 0.03
27 54 0.84
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.38
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:66954728 original size:30 final size:30
Alignment explanation
Indices: 66954683--66954742 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
66954673 ATTTAATACG
* *
66954683 AACTTTGGCAAAATTACATTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTCCCCCTA
* *
66954713 AACTTTTGCATAATTACACTTTTCCCCCTA
1 AACTTTGGCAAAATTACACTTTTCCCCCTA
66954743 GGCTCGGTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.27, G:0.05, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTCCCCCTA
Found at i:66964232 original size:16 final size:16
Alignment explanation
Indices: 66964193--66964226 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
66964183 CCTCAAAAGT
*
66964193 CATCCCTCACCACACA
1 CATCTCTCACCACACA
66964209 CATCTCTCA-CACACA
1 CATCTCTCACCACACA
66964224 CAT
1 CAT
66964227 TTTCTCTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.32, C:0.50, G:0.00, T:0.18
Consensus pattern (16 bp):
CATCTCTCACCACACA
Found at i:66974239 original size:37 final size:37
Alignment explanation
Indices: 66974189--66974260 Score: 144
Period size: 37 Copynumber: 1.9 Consensus size: 37
66974179 GACAAAACTG
66974189 TACGCTGAGTAAAACTCAGTGATATTTCTATAATCTT
1 TACGCTGAGTAAAACTCAGTGATATTTCTATAATCTT
66974226 TACGCTGAGTAAAACTCAGTGATATTTCTATAATC
1 TACGCTGAGTAAAACTCAGTGATATTTCTATAATC
66974261 CTAACATTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (37 bp):
TACGCTGAGTAAAACTCAGTGATATTTCTATAATCTT
Found at i:66975697 original size:13 final size:12
Alignment explanation
Indices: 66975679--66975719 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 12
66975669 GCCATACGTA
66975679 TTTCTCCTTTGCT
1 TTTCTCCTTT-CT
66975692 TTTCTCTCTTTCT
1 TTTCTC-CTTTCT
66975705 TTT-T-CTTTCT
1 TTTCTCCTTTCT
66975715 TTTCT
1 TTTCT
66975720 TTTAAATTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 9 0.35
11 1 0.04
12 1 0.04
13 11 0.42
14 4 0.15
ACGTcount: A:0.00, C:0.27, G:0.02, T:0.71
Consensus pattern (12 bp):
TTTCTCCTTTCT
Found at i:66975834 original size:17 final size:18
Alignment explanation
Indices: 66975784--66975841 Score: 57
Period size: 17 Copynumber: 3.3 Consensus size: 18
66975774 TTATTAATTT
*
66975784 TATAACATATATACATATA
1 TATAACATATA-ATATATA
* * *
66975803 TATATCTTATTATATA-A
1 TATAACATATAATATATA
66975820 TATAACATATAATATATA
1 TATAACATATAATATATA
66975838 -ATAA
1 TATAA
66975842 GTTAACATAT
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
17 18 0.58
18 5 0.16
19 8 0.26
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (18 bp):
TATAACATATAATATATA
Found at i:66976298 original size:21 final size:20
Alignment explanation
Indices: 66976266--66976305 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
66976256 TTTGAACATG
66976266 AATTAATGCAAATTCTATGT
1 AATTAATGCAAATTCTATGT
* *
66976286 AATTTATGTCAAATTTTATG
1 AATTAATG-CAAATTCTATG
66976306 ATTTTATATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.38, C:0.07, G:0.10, T:0.45
Consensus pattern (20 bp):
AATTAATGCAAATTCTATGT
Found at i:66979208 original size:20 final size:20
Alignment explanation
Indices: 66979185--66979227 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
66979175 CACACAGGCA
* *
66979185 TGTCCCAAACTACACGGGTG
1 TGTCCCAAACCACACGGATG
66979205 TGTCCCAAACCACACGGATG
1 TGTCCCAAACCACACGGATG
66979225 TGT
1 TGT
66979228 GACCCCTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (20 bp):
TGTCCCAAACCACACGGATG
Found at i:66987326 original size:24 final size:23
Alignment explanation
Indices: 66987299--66987344 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
66987289 CCTATTACAT
66987299 GGCTCTTT-GTGAGCATTCCTGATA
1 GGCT-TTTCGTGAGC-TTCCTGATA
*
66987323 GGCTTTTCGTGAGCTTCTTGAT
1 GGCTTTTCGTGAGCTTCCTGAT
66987345 TAAAAGTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.13, C:0.20, G:0.26, T:0.41
Consensus pattern (23 bp):
GGCTTTTCGTGAGCTTCCTGATA
Found at i:66989671 original size:42 final size:43
Alignment explanation
Indices: 66989560--66989674 Score: 135
Period size: 43 Copynumber: 2.7 Consensus size: 43
66989550 AAAGCTAGTA
* * * *
66989560 CAATGCCAACGTCCTAGAC-GTGATCTTACATGTAATCAAATAT
1 CAATGCCAATGTCCCAGACAG-GGTCTTACATGAAATCAAATAT
*
66989603 CAATGCCACTGTCCCAGACAGGGTCTTACATGAAATCAAATAT
1 CAATGCCAATGTCCCAGACAGGGTCTTACATGAAATCAAATAT
* * *
66989646 -GATGTCAATGTCCCAGACATGGTCTTACA
1 CAATGCCAATGTCCCAGACAGGGTCTTACA
66989675 CATAATCTCA
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
42 25 0.40
43 36 0.58
44 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACAGGGTCTTACATGAAATCAAATAT
Found at i:66991132 original size:16 final size:16
Alignment explanation
Indices: 66991111--66991144 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
66991101 AACTTGCCTG
66991111 ATGATTATGTAAAT-TT
1 ATGATTATG-AAATATT
66991127 ATGATTATGAAATATT
1 ATGATTATGAAATATT
66991143 AT
1 AT
66991145 ATAGATTACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (16 bp):
ATGATTATGAAATATT
Found at i:66999314 original size:27 final size:26
Alignment explanation
Indices: 66999258--66999314 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
66999248 CAACCTTAAC
* * *
66999258 CCTAGGGGTATATCAGTAATTTTACT
1 CCTAGGGGTAAATCAGTAATTGTACA
* *
66999284 CCTAGGGGTAAATCTGTAAATTGTCCA
1 CCTAGGGGTAAATCAGT-AATTGTACA
66999311 CCTA
1 CCTA
66999315 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTGTACA
Found at i:67002874 original size:63 final size:63
Alignment explanation
Indices: 67002796--67002923 Score: 247
Period size: 63 Copynumber: 2.0 Consensus size: 63
67002786 GCTAAGTGAC
67002796 GCCACTTAGGGACTAGGGAGGTGGCATTAGTAGCTAGCAAGGAGATCCAAGGTTCAAATCCTA
1 GCCACTTAGGGACTAGGGAGGTGGCATTAGTAGCTAGCAAGGAGATCCAAGGTTCAAATCCTA
*
67002859 GCCACTTAGGGACTAGGGAGGTGGCATTAGTAGCTAGTAAGGAGATCCAAGGTTCAAATCCTA
1 GCCACTTAGGGACTAGGGAGGTGGCATTAGTAGCTAGCAAGGAGATCCAAGGTTCAAATCCTA
67002922 GC
1 GC
67002924 TTAGTATTTT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.21
Consensus pattern (63 bp):
GCCACTTAGGGACTAGGGAGGTGGCATTAGTAGCTAGCAAGGAGATCCAAGGTTCAAATCCTA
Found at i:67007202 original size:44 final size:44
Alignment explanation
Indices: 67007138--67007244 Score: 139
Period size: 44 Copynumber: 2.5 Consensus size: 44
67007128 TAGGATCCGA
* *
67007138 TATGTGTTATCGTGTAAGACCACATCTGGGACGTTGGCATCG-ACT
1 TATGTTTTA-CGTGTAAGACCACATCTGGGACATTGGCATCGTA-T
*
67007183 TATGTTTTACGTGTAAGACCTCATCTGGGACATTGGCATCGTAT
1 TATGTTTTACGTGTAAGACCACATCTGGGACATTGGCATCGTAT
*
67007227 T-TGATTT-CGTGTAAGACC
1 TATGTTTTACGTGTAAGACC
67007245 CTGTTTGGGA
Statistics
Matches: 57, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
42 11 0.19
43 5 0.09
44 32 0.56
45 9 0.16
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (44 bp):
TATGTTTTACGTGTAAGACCACATCTGGGACATTGGCATCGTAT
Found at i:67007254 original size:42 final size:42
Alignment explanation
Indices: 67007147--67007287 Score: 135
Period size: 43 Copynumber: 3.3 Consensus size: 42
67007137 ATATGTGTTA
* *
67007147 TCGTGTAAGACCAC-ATCTGGGACGTTGGCATCG-ACTTATGTTT
1 TCGTGTAAGACC-CTATCTGGGACATTGGCATCGTA-TT-TGATT
67007190 TACGTGTAAGA-CCTCATCTGGGACATTGGCATCGTATTTGATT
1 T-CGTGTAAGACCCT-ATCTGGGACATTGGCATCGTATTTGATT
* * * *
67007233 TCGTGTAAGACCCTGTTTGGGACAGTGGCATCAATATTTGATT
1 TCGTGTAAGACCCTATCTGGGACATTGGCATC-GTATTTGATT
* *
67007276 ACATGTAAGACC
1 TCGTGTAAGACC
67007288 ACGTCTTGGA
Statistics
Matches: 84, Mismatches: 8, Indels: 12
0.81 0.08 0.12
Matches are distributed among these distances:
42 25 0.30
43 29 0.35
44 29 0.35
45 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (42 bp):
TCGTGTAAGACCCTATCTGGGACATTGGCATCGTATTTGATT
Found at i:67007514 original size:17 final size:17
Alignment explanation
Indices: 67007492--67007529 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
67007482 GTGACAAAAG
67007492 TATGAGAAAGTATGATA
1 TATGAGAAAGTATGATA
*
67007509 TATGAGAAAGTATGCTA
1 TATGAGAAAGTATGATA
67007526 TATG
1 TATG
67007530 TGCAAATGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.42, C:0.03, G:0.24, T:0.32
Consensus pattern (17 bp):
TATGAGAAAGTATGATA
Found at i:67018668 original size:26 final size:26
Alignment explanation
Indices: 67018632--67018687 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
67018622 AAGCCCATGC
67018632 TTGAATTTTTGATTTTGATGAATATT
1 TTGAATTTTTGATTTTGATGAATATT
67018658 TTGAATTTTTGATTTTGATGAATATT
1 TTGAATTTTTGATTTTGATGAATATT
67018684 TTGA
1 TTGA
67018688 GTTGTGCCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.27, C:0.00, G:0.16, T:0.57
Consensus pattern (26 bp):
TTGAATTTTTGATTTTGATGAATATT
Found at i:67036744 original size:44 final size:44
Alignment explanation
Indices: 67036681--67036767 Score: 174
Period size: 44 Copynumber: 2.0 Consensus size: 44
67036671 TAAGAATGAG
67036681 TAGAACCGGGGTCAATCAAAGCAATTACATTAGTATCAAAGAGA
1 TAGAACCGGGGTCAATCAAAGCAATTACATTAGTATCAAAGAGA
67036725 TAGAACCGGGGTCAATCAAAGCAATTACATTAGTATCAAAGAG
1 TAGAACCGGGGTCAATCAAAGCAATTACATTAGTATCAAAGAG
67036768 GGTGAATGTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.43, C:0.16, G:0.21, T:0.21
Consensus pattern (44 bp):
TAGAACCGGGGTCAATCAAAGCAATTACATTAGTATCAAAGAGA
Found at i:67038522 original size:126 final size:126
Alignment explanation
Indices: 67038297--67038547 Score: 484
Period size: 126 Copynumber: 2.0 Consensus size: 126
67038287 ACTGCCCAGT
67038297 CTGAGTACTAGTCGCTTCAAAAATCATATCTTGAGTTTCACAACTCAAAAATCAGTTTTGTGATT
1 CTGAGTACTAGTCGCTTCAAAAATCATATCTTGAGTTTCACAACTCAAAAATCAGTTTTGTGATT
67038362 TTTACCTGAAACTAGACTCATGTCCCCACCTATGGACTTTTTTCTAGAATTTTTGGTCGGA
66 TTTACCTGAAACTAGACTCATGTCCCCACCTATGGACTTTTTTCTAGAATTTTTGGTCGGA
67038423 CTGAGTACTAGTCGCTTCAAAAATCATATCTTGAGTTTCACAACTCAAAAATCAGTTTTGTGATT
1 CTGAGTACTAGTCGCTTCAAAAATCATATCTTGAGTTTCACAACTCAAAAATCAGTTTTGTGATT
* *
67038488 TTTCCCTGAAACTAGACTCATGTCCCCACCTATGGATTTTTTTCTAGAATTTTTGGTCGG
66 TTTACCTGAAACTAGACTCATGTCCCCACCTATGGACTTTTTTCTAGAATTTTTGGTCGG
67038548 GCCAATTAGT
Statistics
Matches: 123, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
126 123 1.00
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (126 bp):
CTGAGTACTAGTCGCTTCAAAAATCATATCTTGAGTTTCACAACTCAAAAATCAGTTTTGTGATT
TTTACCTGAAACTAGACTCATGTCCCCACCTATGGACTTTTTTCTAGAATTTTTGGTCGGA
Found at i:67039762 original size:39 final size:40
Alignment explanation
Indices: 67039717--67039901 Score: 178
Period size: 40 Copynumber: 4.7 Consensus size: 40
67039707 GCTCCTCGTT
* * *
67039717 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
67039757 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
67039796 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * * * *
67039836 CAAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAAC-TCGCA
* *
67039877 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAACCCGGA
67039902 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 37 0.30
40 74 0.61
41 11 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:67039817 original size:40 final size:39
Alignment explanation
Indices: 67039684--67039901 Score: 165
Period size: 40 Copynumber: 5.5 Consensus size: 39
67039674 AAATCACGTA
* * **
67039684 CCTTCGGGATTTAA-CCGGATATAGCTCCTCGTTCA-AATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCG--CACAATG
* * * * *
67039723 CCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAATG
* *
67039762 CCTTCGGGACATAACCCGGATTTAACAACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCAC-AATG
* * *
67039802 CCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCAC-AATG
* * * * *
67039842 CCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCACAAAG
1 CCTTCGGGA-CTTAACCCGGATTTA-GCAAC-TCGCACAATG
*
67039882 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
67039902 CAGCATTCAA
Statistics
Matches: 143, Mismatches: 29, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
38 2 0.01
39 48 0.34
40 85 0.59
41 8 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (39 bp):
CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAATG
Found at i:67047314 original size:16 final size:17
Alignment explanation
Indices: 67047278--67047316 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
67047268 TTTTAAAAGG
67047278 AAAACAAATGAATCTTA
1 AAAACAAATGAATCTTA
*
67047295 AAAACAATTGAATCTTA
1 AAAACAAATGAATCTTA
67047312 AAAAC
1 AAAAC
67047317 TTAATGAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.59, C:0.13, G:0.05, T:0.23
Consensus pattern (17 bp):
AAAACAAATGAATCTTA
Found at i:67056480 original size:25 final size:25
Alignment explanation
Indices: 67056459--67056570 Score: 125
Period size: 25 Copynumber: 4.5 Consensus size: 25
67056449 TCCATAGTTT
*
67056459 GTGAGAGCATACCGATTTATAGCTC
1 GTGAAAGCATACCGATTTATAGCTC
* *
67056484 GTGAGAGCATACCGATTTAAAGCTC
1 GTGAAAGCATACCGATTTATAGCTC
* *
67056509 GTGAAAGCATACCGATTCATAGTTC
1 GTGAAAGCATACCGATTTATAGCTC
* * * *
67056534 ATGAAAGCATACTGATTCACAGCTC
1 GTGAAAGCATACCGATTTATAGCTC
**
67056559 GTGTGAGCATAC
1 GTGAAAGCATAC
67056571 ATGTATAGGA
Statistics
Matches: 75, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 75 1.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (25 bp):
GTGAAAGCATACCGATTTATAGCTC
Found at i:67056543 original size:50 final size:50
Alignment explanation
Indices: 67056459--67056570 Score: 143
Period size: 50 Copynumber: 2.2 Consensus size: 50
67056449 TCCATAGTTT
* * * *
67056459 GTGAGAGCATACCGATTTATAGCTCGTGAGAGCATACCGATTTAAAGCTC
1 GTGAGAGCATACCGATTCATAGCTCATGAAAGCATACCGATTCAAAGCTC
* * * *
67056509 GTGAAAGCATACCGATTCATAGTTCATGAAAGCATACTGATTCACAGCTC
1 GTGAGAGCATACCGATTCATAGCTCATGAAAGCATACCGATTCAAAGCTC
*
67056559 GTGTGAGCATAC
1 GTGAGAGCATAC
67056571 ATGTATAGGA
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (50 bp):
GTGAGAGCATACCGATTCATAGCTCATGAAAGCATACCGATTCAAAGCTC
Found at i:67060518 original size:28 final size:28
Alignment explanation
Indices: 67060487--67060638 Score: 155
Period size: 28 Copynumber: 5.5 Consensus size: 28
67060477 TTCTTATTTT
* * *
67060487 AGATAGTCTTTGATGAACTTTCCATATA
1 AGATAGTCCTTGGTGAACTTTCCACATA
*
67060515 AGATAGTCCTTGGTGGACTTTCCACATA
1 AGATAGTCCTTGGTGAACTTTCCACATA
* *
67060543 AGATAGTCATTGGT-AGACTTT-CATATA
1 AGATAGTCCTTGGTGA-ACTTTCCACATA
* *
67060570 AGATAGTCCTTGGCGGACTTTCCACATA
1 AGATAGTCCTTGGTGAACTTTCCACATA
* * * *
67060598 AGACAGTCCTTGGCGGACTTTTCACATA
1 AGATAGTCCTTGGTGAACTTTCCACATA
* *
67060626 AGAGAATCCTTGG
1 AGATAGTCCTTGG
67060639 CAAATTTTCC
Statistics
Matches: 106, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
27 22 0.21
28 84 0.79
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.32
Consensus pattern (28 bp):
AGATAGTCCTTGGTGAACTTTCCACATA
Found at i:67060577 original size:55 final size:55
Alignment explanation
Indices: 67060503--67060639 Score: 184
Period size: 55 Copynumber: 2.5 Consensus size: 55
67060493 TCTTTGATGA
* * *
67060503 ACTTTCCATATAAGATAGTCCTTGGTGGACTTTCCACATAAGATAGTCATTGGTAG
1 ACTTT-CATATAAGATAGTCCTTGGCGGACTTTCCACATAAGACAGTCATTGGCAG
* *
67060559 ACTTTCATATAAGATAGTCCTTGGCGGACTTTCCACATAAGACAGTCCTTGGCGG
1 ACTTTCATATAAGATAGTCCTTGGCGGACTTTCCACATAAGACAGTCATTGGCAG
* * *
67060614 ACTTTTCACATAAGAGAATCCTTGGC
1 AC-TTTCATATAAGATAGTCCTTGGC
67060640 AAATTTTCCC
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
55 47 0.65
56 25 0.35
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (55 bp):
ACTTTCATATAAGATAGTCCTTGGCGGACTTTCCACATAAGACAGTCATTGGCAG
Found at i:67060639 original size:28 final size:28
Alignment explanation
Indices: 67060503--67060639 Score: 177
Period size: 28 Copynumber: 4.9 Consensus size: 28
67060493 TCTTTGATGA
* *
67060503 ACTTTCCATATAAGATAGTCCTTGGTGG
1 ACTTTCCACATAAGATAGTCCTTGGCGG
* **
67060531 ACTTTCCACATAAGATAGTCATTGGTAG
1 ACTTTCCACATAAGATAGTCCTTGGCGG
*
67060559 ACTTT-CATATAAGATAGTCCTTGGCGG
1 ACTTTCCACATAAGATAGTCCTTGGCGG
*
67060586 ACTTTCCACATAAGACAGTCCTTGGCGG
1 ACTTTCCACATAAGATAGTCCTTGGCGG
* * *
67060614 ACTTTTCACATAAGAGAATCCTTGGC
1 ACTTTCCACATAAGATAGTCCTTGGC
67060640 AAATTTTCCC
Statistics
Matches: 96, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
27 23 0.24
28 73 0.76
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (28 bp):
ACTTTCCACATAAGATAGTCCTTGGCGG
Found at i:67071478 original size:42 final size:42
Alignment explanation
Indices: 67071321--67071521 Score: 122
Period size: 42 Copynumber: 4.6 Consensus size: 42
67071311 TGCGGTTTCG
* * * *
67071321 TGTAAGACCATATCTAAG-ATATGGCCTCGATATGTGATCCCA
1 TGTAAGACCATAGCT-GGTATATGGCATCGATATGAGATCCCA
* * * * ** *
67071363 TGTAAGTCCATATCTGGGATATGGCATTGGCATCAATATGTGATTTCG
1 TGTAAGACCATAGCT-GG-TAT---A-TGGCATCGATATGAGATCCCA
* * * *
67071411 TGTAAGACCAT-GTCCGGAACATGGCATCGATATGAGA-CATCA
1 TGTAAGACCATAG-CTGGTATATGGCATCGATATGAGATC-CCA
* *
67071453 TGTAATACCATAGCTGGCTAT-TGGCATCGATATGTGATCCCA
1 TGTAAGACCATAGCTGG-TATATGGCATCGATATGAGATCCCA
*
67071495 TGTAAGACCATATCTGGTATATGGCAT
1 TGTAAGACCATAGCTGGTATATGGCAT
67071522 TCACATCTTA
Statistics
Matches: 122, Mismatches: 25, Indels: 24
0.71 0.15 0.14
Matches are distributed among these distances:
41 3 0.02
42 82 0.67
43 4 0.03
44 2 0.02
46 1 0.01
47 3 0.02
48 27 0.22
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATAGCTGGTATATGGCATCGATATGAGATCCCA
Found at i:67074520 original size:43 final size:42
Alignment explanation
Indices: 67074356--67074521 Score: 140
Period size: 43 Copynumber: 3.9 Consensus size: 42
67074346 ATAAGCTTGT
* * ** *
67074356 ACAATGCC-ATATCCCAGATATGGTCTTACATATTAT-TATA
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTATA
* * *
67074396 TATCAATGCCACTGTCCCAGACA-GGATCTTACACGAAATCGATTA
1 -A-CAATGCCAATGTCCCAGACATGG-TCTTACACGTAATCTA-TA
* * ** *
67074441 ACGATGCCGATGTCCTGGACATGGTCTTACACGTAATCTAAA
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTATA
*
67074483 CACAATGCCAATGTCCCAGACATGGTCTTACATGTAATC
1 -ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATC
67074522 ACATCTCCAT
Statistics
Matches: 97, Mismatches: 21, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
41 1 0.01
42 10 0.10
43 80 0.82
44 4 0.04
45 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.28
Consensus pattern (42 bp):
ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTATA
Found at i:67075061 original size:29 final size:29
Alignment explanation
Indices: 67074997--67075062 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
67074987 TTTTCATTTA
* *
67074997 TTTCACAATTTAACCCCTCAATTTACACT
1 TTTCTCAATTTAACCCCTCAATATACACT
* * *
67075026 TTTCTCAATTTAATCCCT-AATATGCATT
1 TTTCTCAATTTAACCCCTCAATATACACT
67075054 TTTACTCAA
1 TTT-CTCAA
67075063 AATCACTTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 10 0.32
29 21 0.68
ACGTcount: A:0.30, C:0.26, G:0.02, T:0.42
Consensus pattern (29 bp):
TTTCTCAATTTAACCCCTCAATATACACT
Found at i:67075099 original size:19 final size:19
Alignment explanation
Indices: 67075075--67075112 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
67075065 TCACTTTACA
67075075 AAACATGTATATTAAACAC
1 AAACATGTATATTAAACAC
67075094 AAACATGTATATTAAACAC
1 AAACATGTATATTAAACAC
67075113 CAAGCTTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.16, G:0.05, T:0.26
Consensus pattern (19 bp):
AAACATGTATATTAAACAC
Found at i:67087719 original size:15 final size:16
Alignment explanation
Indices: 67087686--67087723 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
67087676 ACATATAACA
*
67087686 ATATATATTATTATAT
1 ATATATATTACTATAT
*
67087702 ATATA-ATTACTATTT
1 ATATATATTACTATAT
67087717 ATATATA
1 ATATATA
67087724 AAAAATATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 13 0.68
16 6 0.32
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
ATATATATTACTATAT
Found at i:67092484 original size:15 final size:16
Alignment explanation
Indices: 67092451--67092488 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
67092441 ACATATAACA
*
67092451 ATATATATTATTATAT
1 ATATATATTACTATAT
*
67092467 ATATA-ATTACTATTT
1 ATATATATTACTATAT
67092482 ATATATA
1 ATATATA
67092489 AAAAATATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 13 0.68
16 6 0.32
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
ATATATATTACTATAT
Found at i:67109243 original size:203 final size:202
Alignment explanation
Indices: 67108862--67109274 Score: 471
Period size: 203 Copynumber: 2.0 Consensus size: 202
67108852 ATTCAACAGT
* *
67108862 ACAA-ACTCTTTCTCACTTATTATTTGAGAATGGACACAGCATTTTAATTACCCTAACATATTTT
1 ACAATACTCTTTCCCACTTATTATTTGAGAATGGACACAACATTTTAATTACCCTAACATATTTT
* *
67108926 TAGTCATAATTGATATTTTTAATCCTTCATTACATCTCTTTATCAATTAATCATATGTCCCTTTT
66 CAGTCATAATTGATATTTTTAATCCTTCATTACATCTCTTCATCAATTAATCATATGTCCCTTTT
* *
67108991 GCTCAGTTTAATTAGTCAGTTTCATAGTAATAGCATAACCAATTATTTTAGTAAATTGC-AATCC
131 GCTCAGTTTAATTAGTCAGCTTCATAGTAATAGCATAACCAATTATTTTAATAAATT-CTAATCC
*
67109055 CTGTGGAG
195 CTATGGAG
* * *** * *
67109063 ACAATACTCTTTCCCACTTATTCTTTGGGAATTTCCACAACATTTTAATTGCCCTAGCATATTTT
1 ACAATACTCTTTCCCACTTATTATTTGAGAATGGACACAACATTTTAATTACCCTAACATATTTT
* * * * * ***
67109128 CA-TCCATAATTTAT-TTTATTAATCCATTCATTATATTTCTTCATCAATTAGTCATCTGTTTGT
66 CAGT-CATAATTGATATTT-TTAATCC-TTCATTACATCTCTTCATCAATTAATCATATGTCCCT
* * *
67109191 TTTGCGT-AGTTTAATTAGTTTA-CTTCATGGTAATAGCATAACCAGA-TATTTTAATCAATTCT
128 TTTGC-TCAGTTTAATTAG-TCAGCTTCATAGTAATAGCATAACCA-ATTATTTTAATAAATTCT
*
67109253 TATCCCTATGGAG
190 AATCCCTATGGAG
*
67109266 ACGATACTC
1 ACAATACTC
67109275 ACTCATCACT
Statistics
Matches: 177, Mismatches: 27, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
201 8 0.05
202 69 0.39
203 96 0.54
204 4 0.02
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.42
Consensus pattern (202 bp):
ACAATACTCTTTCCCACTTATTATTTGAGAATGGACACAACATTTTAATTACCCTAACATATTTT
CAGTCATAATTGATATTTTTAATCCTTCATTACATCTCTTCATCAATTAATCATATGTCCCTTTT
GCTCAGTTTAATTAGTCAGCTTCATAGTAATAGCATAACCAATTATTTTAATAAATTCTAATCCC
TATGGAG
Found at i:67125003 original size:42 final size:44
Alignment explanation
Indices: 67124944--67125046 Score: 142
Period size: 43 Copynumber: 2.4 Consensus size: 44
67124934 TTTACGTGCA
* *
67124944 TGTCTGGGAC-ATCGGCATC-ATATTTGATTTCGTGTAAGACC-C
1 TGTCTGGGACAAT-GGCATCGATATTTGATTACATGTAAGACCAC
67124986 TGTCTGGGACAATGGCATCGATATTTGATTACATGTAAGACCAC
1 TGTCTGGGACAATGGCATCGATATTTGATTACATGTAAGACCAC
*
67125030 -GTCTGGGACATTGGCAT
1 TGTCTGGGACAATGGCAT
67125047 TGTACGAGTT
Statistics
Matches: 55, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
42 16 0.29
43 38 0.69
44 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (44 bp):
TGTCTGGGACAATGGCATCGATATTTGATTACATGTAAGACCAC
Found at i:67126292 original size:17 final size:17
Alignment explanation
Indices: 67126270--67126306 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
67126260 GGTGTGTTTG
67126270 ATAACCCTGTGAGTCAC
1 ATAACCCTGTGAGTCAC
*
67126287 ATAACCGTGTGAGTCAC
1 ATAACCCTGTGAGTCAC
67126304 ATA
1 ATA
67126307 GGCTGTTCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.24
Consensus pattern (17 bp):
ATAACCCTGTGAGTCAC
Done.