Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 197 of 235
Found at i:67130826 original size:44 final size:42
Alignment explanation
Indices: 67130752--67130913 Score: 144
Period size: 43 Copynumber: 3.8 Consensus size: 42
67130742 CGATATGTGT
* ** * *
67130752 TTTCGTGTAAGACTACGTCTGGGACGTTGGCATCGGCTTATGA
1 TTTCGTGTAAGACCATATCTGGGACATTGGCATCGGATT-TGA
* *
67130795 TTTACGTGTAAGACCATATCTAGGACATTGGCATCGTATTTGA
1 TTT-CGTGTAAGACCATATCTGGGACATTGGCATCGGATTTGA
* * * * **
67130838 TTTCTTGTAAGACCCTATTTGGGACAGTGGCATCAATATTTGA
1 TTTCGTGTAAGACCATATCTGGGACATTGGCATC-GGATTTGA
* * * *
67130881 TTACATGTAAGACCACATCTGGGACCTTGGCAT
1 TTTCGTGTAAGACCATATCTGGGACATTGGCAT
67130914 TGTACGAGCT
Statistics
Matches: 97, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
42 26 0.27
43 42 0.43
44 29 0.30
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (42 bp):
TTTCGTGTAAGACCATATCTGGGACATTGGCATCGGATTTGA
Found at i:67141397 original size:42 final size:43
Alignment explanation
Indices: 67141280--67141419 Score: 176
Period size: 44 Copynumber: 3.3 Consensus size: 43
67141270 CATAAGATCT
* * *
67141280 GATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATC
1 GATATTTGATTTCGTGTAAGACCATGTCTGGGACATTGGCATC
* *
67141323 GACT-TATGATTTACATGTAAGACCATGTCTGGGACATTGGCATC
1 GA-TATTTGATTT-CGTGTAAGACCATGTCTGGGACATTGGCATC
* *
67141367 -ATATTTGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATC
1 GATATTTGATTTCGTGTAAGACCATGTCTGGGACATTGGCATC
*
67141409 GATACTTGATT
1 GATATTTGATT
67141420 ACATGTATAA
Statistics
Matches: 84, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
42 29 0.35
43 25 0.30
44 30 0.36
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (43 bp):
GATATTTGATTTCGTGTAAGACCATGTCTGGGACATTGGCATC
Found at i:67141590 original size:26 final size:26
Alignment explanation
Indices: 67141561--67141614 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
67141551 AGTATGTTTG
*
67141561 AAATTGTATATCATATTTGATGTTAA
1 AAATTGTATATCATATTTAATGTTAA
67141587 AAATTGTATATCATATTTAATGTTAA
1 AAATTGTATATCATATTTAATGTTAA
67141613 AA
1 AA
67141615 GGTAAGTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.44
Consensus pattern (26 bp):
AAATTGTATATCATATTTAATGTTAA
Found at i:67150454 original size:12 final size:12
Alignment explanation
Indices: 67150437--67150461 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
67150427 AACTATATCC
67150437 CTTCTCCTTCCT
1 CTTCTCCTTCCT
67150449 CTTCTCCTTCCT
1 CTTCTCCTTCCT
67150461 C
1 C
67150462 ACTCTCGCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (12 bp):
CTTCTCCTTCCT
Found at i:67155638 original size:22 final size:22
Alignment explanation
Indices: 67155610--67155659 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
67155600 AAACATATAT
67155610 CACATATCTCATGAGCTCAGAC
1 CACATATCTCATGAGCTCAGAC
*
67155632 CACATATCTCATGAGCTCAGAT
1 CACATATCTCATGAGCTCAGAC
67155654 CACATA
1 CACATA
67155660 GTTCCTAGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.34, C:0.30, G:0.12, T:0.24
Consensus pattern (22 bp):
CACATATCTCATGAGCTCAGAC
Found at i:67170285 original size:24 final size:24
Alignment explanation
Indices: 67170257--67170302 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
67170247 AATAGTTGAT
67170257 AATTAGTA-CTTCTAACTTGGTTAG
1 AATTAGTACCTTCT-ACTTGGTTAG
* *
67170281 AATTATTACCTTCTCCTTGGTT
1 AATTAGTACCTTCTACTTGGTT
67170303 TCCACCCCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.24, C:0.17, G:0.13, T:0.46
Consensus pattern (24 bp):
AATTAGTACCTTCTACTTGGTTAG
Found at i:67171352 original size:46 final size:46
Alignment explanation
Indices: 67171155--67171421 Score: 181
Period size: 47 Copynumber: 5.7 Consensus size: 46
67171145 GGTTATTGTG
* * *
67171155 AGCTAGTGTAAGACATGCCTGGGACATGCATCAGCTAC-ATTATGAG
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCTACGA-GATGAT
* * *
67171201 AGCCAGTGTAAGAACATGTCTGGGACATGGCATCAAC-ATCGAGACGAGT
1 AGCTAGTGTAAG-ACATGTCTGGGACAT-GCATCAGCTA-CGAGATGA-T
*** *
67171250 -GCTAGTGTAAGACATGTCTAAAACATGCATCGGCCT-CGAGATG-T
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCAG-CTACGAGATGAT
* * * *
67171294 AAGCCAGGGTAAGACATGTCGGGGACATGCATCGGCTACGAGATGAT
1 -AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCTACGAGATGAT
* * * *
67171341 AGTTAGTGTAAGACCATGTCTGAGACATGGCAT-TGACT-TGAGAT-AT
1 AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAG-CTACGAGATGAT
* *
67171387 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATC
1 -AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATC
67171422 GACACCTTAC
Statistics
Matches: 175, Mismatches: 30, Indels: 30
0.74 0.13 0.13
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 68 0.39
47 76 0.43
48 27 0.15
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.22
Consensus pattern (46 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCTACGAGATGAT
Found at i:67171369 original size:93 final size:94
Alignment explanation
Indices: 67171201--67171422 Score: 213
Period size: 93 Copynumber: 2.4 Consensus size: 94
67171191 ACATTATGAG
* * ** * *
67171201 AGCCAGTGTAAGAACATGTCTG-GGACATGGCATCAAC-ATCGAGACGAGT-GCTAGTGTAAGAC
1 AGCCAGGGTAAGACCATGTC-GAGGACATGGCATCGGCTA-CGAGATGA-TAGTTAGTGTAAGAC
* *
67171263 ATGTCTAAAACAT-GCATCGGCCTCGAGATGTA
63 ATGTCTAAAACATGGCAT-GGACTCGAGATATA
*
67171295 AGCCAGGGTAAGA-CATGTCGGGGACAT-GCATCGGCTACGAGATGATAGTTAGTGTAAGACCAT
1 AGCCAGGGTAAGACCATGTCGAGGACATGGCATCGGCTACGAGATGATAGTTAGTGTAAGA-CAT
* * * * *
67171358 GTCTGAGACATGGCATTGACTTGAGATATG
65 GTCTAAAACATGGCATGGACTCGAGATATA
* *
67171388 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCG
1 AGCCAGGGTAAGACCATGTCGAGGACATGGCATCG
67171423 ACACCTTACC
Statistics
Matches: 106, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
91 1 0.01
92 25 0.24
93 46 0.43
94 28 0.26
95 6 0.06
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (94 bp):
AGCCAGGGTAAGACCATGTCGAGGACATGGCATCGGCTACGAGATGATAGTTAGTGTAAGACATG
TCTAAAACATGGCATGGACTCGAGATATA
Found at i:67171416 original size:140 final size:141
Alignment explanation
Indices: 67171162--67171422 Score: 314
Period size: 140 Copynumber: 1.9 Consensus size: 141
67171152 GTGAGCTAGT
* * *
67171162 GTAAGACATGCCTGGGACATGCATCAGCTACATTATGAGAGCCAGTGTAAGAACATGTCTGGGAC
1 GTAAGACATGCCGGGGACATGCATCAGCTACATGATGAGAGCCAGTGTAAGAACATGTCTGAGAC
* *
67171227 ATGGCATCAACATCGAGACGAGTGCTAGTGTAAGACATGTCTAAAACAT-GCATCGGCCTCGAGA
66 ATGGCATCAACATCGAGACGAGAGCCAGTGTAAGACATGTCTAAAACATGGCATCGGCCTCGAGA
67171291 TGTAAGCCAGG
131 TGTAAGCCAGG
* * * ** *
67171302 GTAAGACATGTCGGGGACATGCATCGGCTACGA-GATGATAGTTAGTGTAAGACCATGTCTGAGA
1 GTAAGACATGCCGGGGACATGCATCAGCTAC-ATGATGAGAGCCAGTGTAAGAACATGTCTGAGA
** * * **
67171366 CATGGCATTGAC-TTGAGA-TATGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCG
65 CATGGCATCAACATCGAGACGA-GAGCCAGTGTAAGA-CATGTCTAAAACATGGCATCG
67171423 ACACCTTACC
Statistics
Matches: 100, Mismatches: 17, Indels: 7
0.81 0.14 0.06
Matches are distributed among these distances:
138 1 0.01
139 17 0.17
140 75 0.75
141 7 0.07
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.22
Consensus pattern (141 bp):
GTAAGACATGCCGGGGACATGCATCAGCTACATGATGAGAGCCAGTGTAAGAACATGTCTGAGAC
ATGGCATCAACATCGAGACGAGAGCCAGTGTAAGACATGTCTAAAACATGGCATCGGCCTCGAGA
TGTAAGCCAGG
Found at i:67178044 original size:47 final size:47
Alignment explanation
Indices: 67177926--67178103 Score: 157
Period size: 47 Copynumber: 3.8 Consensus size: 47
67177916 ATAATTTCAC
* * * *
67177926 CCATAATGAACTCAGAACGCAACTCAAGGAGCTT-GA-GTTTTCACAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTTGGATG-CTTCACAT
* * *
67177972 CCATAATGAACTCGGGACACAACTCAACGAGTTTGGATGCTT-GCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTTGGATGCTTCACAT
* * * *
67178018 CCATAAGTGAACTCGGAACGCAACTCAACTAGTTCGGATGCCTCATAAT
1 CCATAA-TGAACTCGGAACGCAACTCAACGAGTTTGGATGCTTCA-CAT
* * * * *
67178067 TC-TCACGAACTCGAAACGCAACTCAACGAGTTCGGAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTTGGAT
67178104 CTCAATTTCC
Statistics
Matches: 108, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
46 38 0.35
47 64 0.59
48 3 0.03
49 3 0.03
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (47 bp):
CCATAATGAACTCGGAACGCAACTCAACGAGTTTGGATGCTTCACAT
Found at i:67185734 original size:21 final size:21
Alignment explanation
Indices: 67185710--67185751 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
67185700 TCATCAGATC
*
67185710 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
67185731 TACATGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
67185752 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.40, T:0.21
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:67187504 original size:46 final size:46
Alignment explanation
Indices: 67187418--67187532 Score: 119
Period size: 46 Copynumber: 2.5 Consensus size: 46
67187408 CCCATAAACA
* *
67187418 AACTCGGACTCAACTCAACAAGCTCAAGCGTTCACATACA-TAAGTG
1 AACTCGGACTCAACTCAACAAGCTCAAGCGCTCACATACACTAA-CG
* ** *
67187464 AACTCGGACTCAACTCAACAAGCTCGGATGC-CT-AGTTACATCTCACG
1 AACTCGGACTCAACTCAACAAGCTC--AAGCGCTCACATACA-CTAACG
67187511 AACTCGGACTCAACTCAACAAG
1 AACTCGGACTCAACTCAACAAG
67187533 TTCAGAACTC
Statistics
Matches: 59, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
46 30 0.51
47 24 0.41
48 5 0.08
ACGTcount: A:0.35, C:0.30, G:0.16, T:0.19
Consensus pattern (46 bp):
AACTCGGACTCAACTCAACAAGCTCAAGCGCTCACATACACTAACG
Found at i:67193392 original size:3 final size:3
Alignment explanation
Indices: 67193384--67193413 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
67193374 CTTAATGTAT
*
67193384 ATA ATA ATA ATA ATA ATA ATA ATA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
67193414 GGTGCAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:67197306 original size:30 final size:30
Alignment explanation
Indices: 67197272--67197332 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
67197262 GGTTTTTCTT
67197272 TCTTTTTTTCTTCGACACCGATCAATTTAG
1 TCTTTTTTTCTTCGACACCGATCAATTTAG
67197302 TCTTTTTTTCTTCGACACCGATCAATTTAG
1 TCTTTTTTTCTTCGACACCGATCAATTTAG
67197332 T
1 T
67197333 AGTTGAGTGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.20, C:0.23, G:0.10, T:0.48
Consensus pattern (30 bp):
TCTTTTTTTCTTCGACACCGATCAATTTAG
Found at i:67197957 original size:11 final size:11
Alignment explanation
Indices: 67197943--67198017 Score: 73
Period size: 11 Copynumber: 6.9 Consensus size: 11
67197933 AATAATAGCT
67197943 AAATAATAATA
1 AAATAATAATA
*
67197954 AAATAGTAATA
1 AAATAATAATA
* *
67197965 AAATAGA-GAGA
1 AAATA-ATAATA
67197976 AAATAATAATA
1 AAATAATAATA
* *
67197987 AATTAATATTA
1 AAATAATAATA
*
67197998 AAA-AATAAAA
1 AAATAATAATA
67198008 AAATAATAAT
1 AAATAATAAT
67198018 TTTTTGTCTT
Statistics
Matches: 49, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
10 9 0.18
11 40 0.82
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.25
Consensus pattern (11 bp):
AAATAATAATA
Found at i:67197968 original size:22 final size:22
Alignment explanation
Indices: 67197871--67198017 Score: 77
Period size: 22 Copynumber: 6.5 Consensus size: 22
67197861 CAAATGCTTC
* *
67197871 TAAAATAATAACAAAATTAACAA
1 TAAAATAATAATAAAA-TAATAA
* * *
67197894 TAAAATAA-AATTTATATAATAT
1 TAAAATAATAA-TAAAATAATAA
* * *
67197916 TCAAACAATAACAACAA-AATAA
1 TAAAATAATAATAA-AATAATAA
*
67197938 TAGCTAAATAATAATAAAATAGTAA
1 TA---AAATAATAATAAAATAATAA
* *
67197963 TAAAATAGA-GAGAAAATAATAA
1 TAAAATA-ATAATAAAATAATAA
* *
67197985 TAAATTAATATTAAAA-AATAA
1 TAAAATAATAATAAAATAATAA
*
67198006 AAAAATAATAAT
1 TAAAATAATAAT
67198018 TTTTTGTCTT
Statistics
Matches: 90, Mismatches: 25, Indels: 20
0.67 0.19 0.15
Matches are distributed among these distances:
21 15 0.17
22 43 0.48
23 14 0.16
24 2 0.02
25 16 0.18
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (22 bp):
TAAAATAATAATAAAATAATAA
Found at i:67198155 original size:21 final size:21
Alignment explanation
Indices: 67198129--67198169 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
67198119 TATCCAAACC
67198129 TATTTTTCAGATTTATATTTG
1 TATTTTTCAGATTTATATTTG
67198150 TATTTTTCAGATTTATATTT
1 TATTTTTCAGATTTATATTT
67198170 TTAGCCAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.05, G:0.07, T:0.63
Consensus pattern (21 bp):
TATTTTTCAGATTTATATTTG
Found at i:67204692 original size:40 final size:40
Alignment explanation
Indices: 67204630--67204963 Score: 523
Period size: 40 Copynumber: 8.4 Consensus size: 40
67204620 AAGCCAAGTA
* * *
67204630 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
67204669 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
67204709 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
67204749 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
67204789 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
67204829 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
67204869 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
67204909 CCTTCGGGACTT-GCCCGGA-ACTAGTCACTAGCGCAGATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
67204948 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
67204964 TGGTGGTCAT
Statistics
Matches: 276, Mismatches: 15, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
39 43 0.16
40 233 0.84
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:67219131 original size:31 final size:31
Alignment explanation
Indices: 67219096--67219164 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
67219086 TACAAAATGA
67219096 TCATTGAATTATTCAGAAGTTTTCATTTAAG
1 TCATTGAATTATTCAGAAGTTTTCATTTAAG
* ** *
67219127 TCATTAAATTATTTGGAAGTTTTTATTTAAG
1 TCATTGAATTATTCAGAAGTTTTCATTTAAG
67219158 TCATTGA
1 TCATTGA
67219165 GTTAAGTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.32, C:0.07, G:0.13, T:0.48
Consensus pattern (31 bp):
TCATTGAATTATTCAGAAGTTTTCATTTAAG
Found at i:67231182 original size:81 final size:81
Alignment explanation
Indices: 67231047--67231208 Score: 324
Period size: 81 Copynumber: 2.0 Consensus size: 81
67231037 TCTGAACTTT
67231047 GTCATGTTGAATTATTGAAAATGAACTGATTCTTTATTAAGTTTGGATTGATTCGTTCTTTTTAA
1 GTCATGTTGAATTATTGAAAATGAACTGATTCTTTATTAAGTTTGGATTGATTCGTTCTTTTTAA
67231112 TATTATGGATTTGATA
66 TATTATGGATTTGATA
67231128 GTCATGTTGAATTATTGAAAATGAACTGATTCTTTATTAAGTTTGGATTGATTCGTTCTTTTTAA
1 GTCATGTTGAATTATTGAAAATGAACTGATTCTTTATTAAGTTTGGATTGATTCGTTCTTTTTAA
67231193 TATTATGGATTTGATA
66 TATTATGGATTTGATA
67231209 TTTTAATTAT
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.28, C:0.06, G:0.17, T:0.48
Consensus pattern (81 bp):
GTCATGTTGAATTATTGAAAATGAACTGATTCTTTATTAAGTTTGGATTGATTCGTTCTTTTTAA
TATTATGGATTTGATA
Found at i:67231942 original size:17 final size:18
Alignment explanation
Indices: 67231915--67231960 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
67231905 GTATTAATTT
67231915 TATAT-TATTATAAT-TG
1 TATATATATTATAATGTG
* *
67231931 TGTATATATTAT-GTGTG
1 TATATATATTATAATGTG
67231948 TATATATATTATA
1 TATATATATTATA
67231961 TGCATATCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 5 0.21
17 19 0.79
ACGTcount: A:0.35, C:0.00, G:0.11, T:0.54
Consensus pattern (18 bp):
TATATATATTATAATGTG
Found at i:67242402 original size:28 final size:28
Alignment explanation
Indices: 67242370--67242428 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
67242360 GCAGATATGA
67242370 TGACTAAGTCACTTCCTATAACCAAGTT
1 TGACTAAGTCACTTCCTATAACCAAGTT
*
67242398 TGACTAAGTCATTTCCTATAACCAAGTT
1 TGACTAAGTCACTTCCTATAACCAAGTT
67242426 TGA
1 TGA
67242429 GCATTGCTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (28 bp):
TGACTAAGTCACTTCCTATAACCAAGTT
Found at i:67247354 original size:26 final size:26
Alignment explanation
Indices: 67247301--67247354 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
67247291 TGGGCAACGG
* *
67247301 GACCCCCACAGGGGGCTCCATCCCTT
1 GACCCCCACAAGGGGCTCCAGCCCTT
67247327 GACCCCCACAAGGGGCTCC-GCCCATT
1 GACCCCCACAAGGGGCTCCAGCCC-TT
67247353 GA
1 GA
67247355 TCTCATGTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.19, C:0.44, G:0.24, T:0.13
Consensus pattern (26 bp):
GACCCCCACAAGGGGCTCCAGCCCTT
Found at i:67250343 original size:40 final size:40
Alignment explanation
Indices: 67250299--67250562 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
67250289 GCTACTCGTT
* *
67250299 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
67250339 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
67250379 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
67250419 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
67250459 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
67250498 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
67250539 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67250563 CATCATTCAA
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
38 2 0.01
39 49 0.24
40 146 0.71
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:67254018 original size:14 final size:15
Alignment explanation
Indices: 67253999--67254036 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
67253989 AATAACTTAA
*
67253999 AATCTAA-CCATTTT
1 AATCTAATCCATGTT
67254013 AATCTAAATCCATGTT
1 AATCT-AATCCATGTT
67254029 AATCTAAT
1 AATCTAAT
67254037 ATGCAAGGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 5 0.24
15 5 0.24
16 11 0.52
ACGTcount: A:0.39, C:0.18, G:0.03, T:0.39
Consensus pattern (15 bp):
AATCTAATCCATGTT
Found at i:67255382 original size:24 final size:24
Alignment explanation
Indices: 67255350--67255396 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
67255340 TTCTTCGGTT
67255350 TCTTGAATCAAAT-TAACCCAAATC
1 TCTTGAATCAAATCT-ACCCAAATC
67255374 TCTTGAATCAAATCTACCCAAAT
1 TCTTGAATCAAATCTACCCAAAT
67255397 AGCTTTTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 21 0.95
25 1 0.05
ACGTcount: A:0.40, C:0.26, G:0.04, T:0.30
Consensus pattern (24 bp):
TCTTGAATCAAATCTACCCAAATC
Found at i:67261584 original size:79 final size:78
Alignment explanation
Indices: 67261482--67261704 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
67261472 GCTCCTCGTT
* *
67261482 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
67261547 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
67261562 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
67261626 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
67261640 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
67261703 GA
63 GA
67261705 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
78 45 0.36
79 60 0.48
80 20 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:67261599 original size:39 final size:40
Alignment explanation
Indices: 67261482--67261704 Score: 280
Period size: 39 Copynumber: 5.7 Consensus size: 40
67261472 GCTCCTCGTT
* *
67261482 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
67261522 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
67261562 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
67261601 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
67261640 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
67261681 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67261705 CATCATTCAA
Statistics
Matches: 167, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 88 0.53
40 67 0.40
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:67269503 original size:40 final size:40
Alignment explanation
Indices: 67269459--67269720 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
67269449 GCTCCTCGTT
* *
67269459 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
67269499 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
67269539 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
67269578 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
67269617 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
67269656 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
67269697 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67269721 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:67279835 original size:29 final size:28
Alignment explanation
Indices: 67279748--67279873 Score: 164
Period size: 29 Copynumber: 4.5 Consensus size: 28
67279738 TATTGAGCCT
*
67279748 GCACACTCAGTGCTATATAATC-AACTC
1 GCACACTTAGTGCTATATAATCAAACTC
67279775 GCACACTTAGTGCTATATAATCAAACTC
1 GCACACTTAGTGCTATATAATCAAACTC
* *
67279803 GCACACTTAGTGCTTACATAATCAAACTT
1 GCACACTTAGTGC-TATATAATCAAACTC
** * *
67279832 GCACACTTAGTGCTATGCAATTTAAACCC
1 GCACACTTAGTGCTATATAA-TCAAACTC
67279861 GCACACTTAGTGC
1 GCACACTTAGTGC
67279874 CAATCTCATG
Statistics
Matches: 87, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
27 21 0.24
28 22 0.25
29 44 0.51
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.28
Consensus pattern (28 bp):
GCACACTTAGTGCTATATAATCAAACTC
Found at i:67279844 original size:57 final size:56
Alignment explanation
Indices: 67279748--67279873 Score: 164
Period size: 57 Copynumber: 2.2 Consensus size: 56
67279738 TATTGAGCCT
* * * *
67279748 GCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTATATAA-TCAAACTC
1 GCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTATACAATTCAAACCC
* * *
67279803 GCACACTTAGTGCTTACATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAACCC
1 GCACACTTAGTGC-TACATAATC-AACTCGCACACTTAGTGCTATACAATTCAAACCC
67279861 GCACACTTAGTGC
1 GCACACTTAGTGC
67279874 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
55 12 0.20
56 8 0.13
57 22 0.36
58 19 0.31
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.28
Consensus pattern (56 bp):
GCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTATACAATTCAAACCC
Found at i:67283954 original size:40 final size:40
Alignment explanation
Indices: 67283871--67284063 Score: 212
Period size: 40 Copynumber: 4.8 Consensus size: 40
67283861 ACCCAAGTAT
** * *
67283871 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
67283909 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
67283949 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
67283989 CTTCGGGTTTTGGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
67284029 CTTCGGATCTTAGTCCGAATATAGTCACTTAGCAC
1 CTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCAC
67284064 CAACTGTGGT
Statistics
Matches: 128, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
37 1 0.01
38 11 0.09
39 15 0.12
40 96 0.75
41 5 0.04
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:67298454 original size:40 final size:40
Alignment explanation
Indices: 67298403--67298548 Score: 211
Period size: 40 Copynumber: 3.6 Consensus size: 40
67298393 ACTTTATATC
* * * * * *
67298403 TCGCACCCTAAGTGTCGTACATAGCCGAAGCTATCTCAAA
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCGAA
67298443 TCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCGAA
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCGAA
* * *
67298483 TCACACATTAAGTGCCATATATGGCCGAAGCTATGTCGAA
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCGAA
67298523 TCGCACACTAAGTGCCATATATAGCC
1 TCGCACACTAAGTGCCATATATAGCC
67298549 AATTTGTCAT
Statistics
Matches: 94, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 94 1.00
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCGAA
Found at i:67300413 original size:27 final size:27
Alignment explanation
Indices: 67300382--67300559 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
67300372 TAAATTGTAC
67300382 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
67300409 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67300435 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
67300463 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
67300491 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67300518 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
67300545 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67300560 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:67300496 original size:82 final size:81
Alignment explanation
Indices: 67300383--67300538 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
67300373 AAATTGTACA
* *
67300383 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
67300447 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
67300464 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
67300529 TGCGAGTTGA
65 TGCGAATTGA
67300539 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:67300550 original size:82 final size:81
Alignment explanation
Indices: 67300379--67300559 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
67300369 GATTAAATTG
* *
67300379 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
67300444 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
67300460 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
67300524 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
67300542 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
67300560 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:67308476 original size:27 final size:27
Alignment explanation
Indices: 67308445--67308622 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
67308435 TAAATTGTAC
67308445 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
67308472 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67308498 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
67308526 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
67308554 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67308581 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
67308608 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67308623 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:67308559 original size:82 final size:81
Alignment explanation
Indices: 67308446--67308601 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
67308436 AAATTGTACA
* *
67308446 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
67308510 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
67308527 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
67308592 TGCGAGTTGA
65 TGCGAATTGA
67308602 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:67308613 original size:82 final size:81
Alignment explanation
Indices: 67308442--67308622 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
67308432 GATTAAATTG
* *
67308442 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
67308507 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
67308523 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
67308587 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
67308605 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
67308623 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:67315771 original size:39 final size:39
Alignment explanation
Indices: 67315716--67315805 Score: 135
Period size: 39 Copynumber: 2.3 Consensus size: 39
67315706 GGCTTCACTA
* * *
67315716 ATACACAAATTATTCTTAGCTTACAAGGGAGCTTTGCTG
1 ATACACAACTTATTCTTAGCTCACAAAGGAGCTTTGCTG
* *
67315755 GTACACATCTTATTCTTAGCTCACAAAGGAGCTTTGCTG
1 ATACACAACTTATTCTTAGCTCACAAAGGAGCTTTGCTG
67315794 ATACACAACTTA
1 ATACACAACTTA
67315806 CCCATAAGCT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (39 bp):
ATACACAACTTATTCTTAGCTCACAAAGGAGCTTTGCTG
Found at i:67315828 original size:40 final size:39
Alignment explanation
Indices: 67315733--67315817 Score: 98
Period size: 39 Copynumber: 2.2 Consensus size: 39
67315723 AATTATTCTT
* * * * ** *
67315733 AGCTTACAAGGGAGCTTTGCTGGTACACATCTTATTCTT
1 AGCTCACAAAGGAGCTTTGCTGATACACAACTTACCCTA
67315772 AGCTCACAAAGGAGCTTTGCTGATACACAACTTACCCATA
1 AGCTCACAAAGGAGCTTTGCTGATACACAACTTACCC-TA
67315812 AGCTCA
1 AGCTCA
67315818 AATGAGAGCT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 31 0.82
40 7 0.18
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (39 bp):
AGCTCACAAAGGAGCTTTGCTGATACACAACTTACCCTA
Found at i:67324481 original size:16 final size:17
Alignment explanation
Indices: 67324460--67324492 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
67324450 TCACATTGAA
67324460 GTGTTTT-AGTGAAAAC
1 GTGTTTTCAGTGAAAAC
*
67324476 GTGTTTTCATTGAAAAC
1 GTGTTTTCAGTGAAAAC
67324493 TCTTCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (17 bp):
GTGTTTTCAGTGAAAAC
Found at i:67325602 original size:29 final size:30
Alignment explanation
Indices: 67325565--67325654 Score: 114
Period size: 29 Copynumber: 3.1 Consensus size: 30
67325555 GCCCAAACTC
*
67325565 ATTTATATGGCCCATCT-GGCCCAGTTCAT
1 ATTTATATGGCCCATCTAGGCCCAATTCAT
* *
67325594 ATTTTTATGGCCCA-CTAGGCCCAATTCAC
1 ATTTATATGGCCCATCTAGGCCCAATTCAT
* *
67325623 ATTCATATGGCCCAT-TAGGCCCAAATCAT
1 ATTTATATGGCCCATCTAGGCCCAATTCAT
67325652 ATT
1 ATT
67325655 ATACTCATGC
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
28 2 0.04
29 50 0.96
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.32
Consensus pattern (30 bp):
ATTTATATGGCCCATCTAGGCCCAATTCAT
Found at i:67325644 original size:58 final size:57
Alignment explanation
Indices: 67325542--67325654 Score: 138
Period size: 58 Copynumber: 2.0 Consensus size: 57
67325532 CATACATGCA
* * * **
67325542 TATGACCCACTGGGCCCAAACTCATTTATATGGCCCATCTGGCCCAGTTCATATTTT
1 TATGACCCACTAGGCCCAAACACATTCATATGGCCCATCTGGCCCAAATCATATTTT
* *
67325599 TATGGCCCACTAGGCCCAATTCACATTCATATGGCCCAT-TAGGCCCAAATCATATT
1 TATGACCCACTAGGCCCAA-ACACATTCATATGGCCCATCT-GGCCCAAATCATATT
67325655 ATACTCATGC
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
57 18 0.38
58 29 0.62
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (57 bp):
TATGACCCACTAGGCCCAAACACATTCATATGGCCCATCTGGCCCAAATCATATTTT
Found at i:67325908 original size:24 final size:23
Alignment explanation
Indices: 67325876--67325921 Score: 83
Period size: 24 Copynumber: 2.0 Consensus size: 23
67325866 TAACTTTAGG
67325876 CTTTTCGGCATTTTGGCGTTTTGA
1 CTTTTCGGCATTTTGGC-TTTTGA
67325900 CTTTTCGGCATTTTGGCTTTTG
1 CTTTTCGGCATTTTGGCTTTTG
67325922 TCGATTCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 5 0.23
24 17 0.77
ACGTcount: A:0.07, C:0.17, G:0.24, T:0.52
Consensus pattern (23 bp):
CTTTTCGGCATTTTGGCTTTTGA
Found at i:67327120 original size:30 final size:30
Alignment explanation
Indices: 67327086--67327146 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
67327076 TTCCCGAGCC
67327086 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * * *
67327116 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
67327146 T
1 T
67327147 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:67339804 original size:42 final size:42
Alignment explanation
Indices: 67339758--67339879 Score: 185
Period size: 42 Copynumber: 2.9 Consensus size: 42
67339748 ATGTTATAGT
*
67339758 ATATCGATGCCAATAG-CCCA-ACTATGGTCTTATACGAATCTC
1 ATATCGATGCCAAT-GTCCCAGAC-ATGGTCTTACACGAATCTC
* *
67339800 ATATCGATGCTAATGTCCCAGACATGGTCTTACATGAATCTC
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAATCTC
67339842 ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAA
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAA
67339880 ATCACATCCT
Statistics
Matches: 73, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
41 1 0.01
42 70 0.96
43 2 0.03
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28
Consensus pattern (42 bp):
ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAATCTC
Found at i:67342530 original size:40 final size:40
Alignment explanation
Indices: 67342475--67342577 Score: 127
Period size: 40 Copynumber: 2.6 Consensus size: 40
67342465 ATAAATTAGA
* *
67342475 TATATGTGGCACTTAGTGTGTGATTCAATATAGCTTCGGC
1 TATATATGGCACTTAGTGTGTGATTCAAGATAGCTTCGGC
*
67342515 TATATATGGCACTTAGTGTGCT-ATTTAAGATAGCTTCGGC
1 TATATATGGCACTTAGTGTG-TGATTCAAGATAGCTTCGGC
* ** *
67342555 TATGTACAGAACTTAGTGTGTGA
1 TATATATGGCACTTAGTGTGTGA
67342578 GATATCGAGT
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
39 1 0.02
40 52 0.96
41 1 0.02
ACGTcount: A:0.25, C:0.14, G:0.24, T:0.37
Consensus pattern (40 bp):
TATATATGGCACTTAGTGTGTGATTCAAGATAGCTTCGGC
Found at i:67347477 original size:17 final size:17
Alignment explanation
Indices: 67347455--67347487 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
67347445 TAGAATATGT
67347455 GTACCAAGAAATTTTGC
1 GTACCAAGAAATTTTGC
67347472 GTACCAAGAAATTTTG
1 GTACCAAGAAATTTTG
67347488 AACTCATTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.30
Consensus pattern (17 bp):
GTACCAAGAAATTTTGC
Found at i:67351536 original size:31 final size:31
Alignment explanation
Indices: 67351501--67351633 Score: 203
Period size: 31 Copynumber: 4.3 Consensus size: 31
67351491 TGATAAGTAA
*
67351501 TAGCTTCGGCTACCTGATCAGTGAAAAGTGG
1 TAGCTTCGGCTACCTGATCAGTGAAAAATGG
*
67351532 TAGCTTCTGCTACCTGATCAGTGAAAAATGG
1 TAGCTTCGGCTACCTGATCAGTGAAAAATGG
* *
67351563 TAGCTCCGACTACCTGATCAGTGAAAAATGG
1 TAGCTTCGGCTACCTGATCAGTGAAAAATGG
* * *
67351594 TAGCTCCGGCTACCTGATCAGTGAATAGTGG
1 TAGCTTCGGCTACCTGATCAGTGAAAAATGG
67351625 TAGCTTCGG
1 TAGCTTCGG
67351634 TTACAAGTGA
Statistics
Matches: 93, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 93 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (31 bp):
TAGCTTCGGCTACCTGATCAGTGAAAAATGG
Found at i:67351782 original size:41 final size:43
Alignment explanation
Indices: 67351737--67351868 Score: 115
Period size: 42 Copynumber: 3.0 Consensus size: 43
67351727 GCATCAGTGA
*
67351737 GATATGTGATT-CGTGTAAGACCATAGCTGGGCTATGGCATCGATATGT
1 GATATGTGATTACGTGTAAGACCATAGCTGGGCTAT-G-A-C---ATCT
67351785 GATATGTGATTACGTGTAAGACCATAGCTGGGCTATGACATC-
1 GATATGTGATTACGTGTAAGACCATAGCTGGGCTATGACATCT
* ** * * * **
67351827 GATATATGAAGATGTATAAGACCATAGTTGAACTATGACATC
1 GATATGTGATTACGTGTAAGACCATAGCTGGGCTATGACATC
67351869 GAGTAAACAA
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
42 34 0.46
43 2 0.03
46 1 0.01
47 1 0.01
48 12 0.16
49 24 0.32
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (43 bp):
GATATGTGATTACGTGTAAGACCATAGCTGGGCTATGACATCT
Found at i:67351831 original size:49 final size:48
Alignment explanation
Indices: 67351659--67351828 Score: 195
Period size: 47 Copynumber: 3.6 Consensus size: 48
67351649 GATTTCCGTA
* * * * *
67351659 TAAGACCATATCTGGGATATGGCATCG-GTGTGATATATG-CTACTGTA
1 TAAGACCATAGCTGGGATATGGCATCGAATGTGATATGTGATTAC-GTG
* * *
67351706 TAAGACCATATCTGGGATATGGCATC-AGTGAGATATGTGATT-CGTG
1 TAAGACCATAGCTGGGATATGGCATCGAATGTGATATGTGATTACGTG
*
67351752 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGATATGGCATCGA-ATGTGATATGTGATTACGTG
* *
67351801 TAAGACCATAGCTGGGCTATGACATCGA
1 TAAGACCATAGCTGGGATATGGCATCGA
67351829 TATATGAAGA
Statistics
Matches: 109, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
46 26 0.24
47 38 0.35
48 14 0.13
49 31 0.28
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.29
Consensus pattern (48 bp):
TAAGACCATAGCTGGGATATGGCATCGAATGTGATATGTGATTACGTG
Found at i:67355279 original size:43 final size:42
Alignment explanation
Indices: 67355213--67355304 Score: 116
Period size: 43 Copynumber: 2.1 Consensus size: 42
67355203 AAATCGTACA
* *
67355213 ATGCCAACGTCCCAGACGTGGTCTTACAT-GTAGTCACATATCG
1 ATGCC-ACGTCCCAGACGTGGTCTTAC-TCGGAATCACATATCG
67355256 ATGCCACTGTCCCAGACAG-GGTCTTACTCGGAATCACATATCG
1 ATGCCAC-GTCCCAGAC-GTGGTCTTACTCGGAATCACATATCG
67355299 ATGCCA
1 ATGCCA
67355305 TGGTATTACT
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
42 3 0.07
43 40 0.91
44 1 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (42 bp):
ATGCCACGTCCCAGACGTGGTCTTACTCGGAATCACATATCG
Found at i:67361565 original size:15 final size:16
Alignment explanation
Indices: 67361545--67361581 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
67361535 AAAACTAATC
67361545 CAATATATATATA-AA
1 CAATATATATATAGAA
67361560 CAATATATATATAGAA
1 CAATATATATATAGAA
67361576 C-ATATA
1 CAATATA
67361582 ACAAAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 18 0.86
16 3 0.14
ACGTcount: A:0.57, C:0.08, G:0.03, T:0.32
Consensus pattern (16 bp):
CAATATATATATAGAA
Found at i:67362624 original size:84 final size:84
Alignment explanation
Indices: 67362529--67362697 Score: 320
Period size: 84 Copynumber: 2.0 Consensus size: 84
67362519 CAAACATAAC
67362529 CGAATTAAAGCATGGAAGTTAAGCCATTTTCACATGGCTTAATTTATACAAAACCAAAATCCAAC
1 CGAATTAAAGCATGGAAGTTAAGCCATTTTCACATGGCTTAATTTATACAAAACCAAAATCCAAC
67362594 ATTTCAAAACATGATCCAG
66 ATTTCAAAACATGATCCAG
* *
67362613 CGAATTCAAGCATGGAAGTTAAGCCATTTTCACATGGCTTAATTTATACAAAACCAAAATCTAAC
1 CGAATTAAAGCATGGAAGTTAAGCCATTTTCACATGGCTTAATTTATACAAAACCAAAATCCAAC
67362678 ATTTCAAAACATGATCCAG
66 ATTTCAAAACATGATCCAG
67362697 C
1 C
67362698 CTATACATAC
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 83 1.00
ACGTcount: A:0.41, C:0.21, G:0.12, T:0.27
Consensus pattern (84 bp):
CGAATTAAAGCATGGAAGTTAAGCCATTTTCACATGGCTTAATTTATACAAAACCAAAATCCAAC
ATTTCAAAACATGATCCAG
Found at i:67374777 original size:43 final size:42
Alignment explanation
Indices: 67374711--67374802 Score: 116
Period size: 43 Copynumber: 2.1 Consensus size: 42
67374701 AAATCGTACA
* *
67374711 ATGCCAACGTCCCAGACGTGGTCTTACAT-GTAGTCACATATCG
1 ATGCC-ACGTCCCAGACGTGGTCTTAC-TCGGAATCACATATCG
67374754 ATGCCACTGTCCCAGACAG-GGTCTTACTCGGAATCACATATCG
1 ATGCCAC-GTCCCAGAC-GTGGTCTTACTCGGAATCACATATCG
67374797 ATGCCA
1 ATGCCA
67374803 TGGTATTACT
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
42 3 0.07
43 40 0.91
44 1 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (42 bp):
ATGCCACGTCCCAGACGTGGTCTTACTCGGAATCACATATCG
Found at i:67377056 original size:27 final size:26
Alignment explanation
Indices: 67377021--67377082 Score: 85
Period size: 23 Copynumber: 2.5 Consensus size: 26
67377011 ATTAAATGTT
*
67377021 TTAAAGGTTAAATAAGTAAATTGATTA
1 TTAATGGTT-AATAAGTAAATTGATTA
67377048 TTAATGG-T--TAAGTAAATTGATTA
1 TTAATGGTTAATAAGTAAATTGATTA
67377071 TTAATGGTTAAT
1 TTAATGGTTAAT
67377083 TAAATTTAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
23 22 0.71
24 1 0.03
26 2 0.06
27 6 0.19
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (26 bp):
TTAATGGTTAATAAGTAAATTGATTA
Found at i:67377060 original size:23 final size:23
Alignment explanation
Indices: 67377033--67377088 Score: 103
Period size: 23 Copynumber: 2.4 Consensus size: 23
67377023 AAAGGTTAAA
67377033 TAAGTAAATTGATTATTAATGGT
1 TAAGTAAATTGATTATTAATGGT
67377056 TAAGTAAATTGATTATTAATGGT
1 TAAGTAAATTGATTATTAATGGT
*
67377079 TAATTAAATT
1 TAAGTAAATT
67377089 TAAAAAAAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (23 bp):
TAAGTAAATTGATTATTAATGGT
Found at i:67377927 original size:40 final size:40
Alignment explanation
Indices: 67377862--67377944 Score: 103
Period size: 40 Copynumber: 2.1 Consensus size: 40
67377852 ACAAATTAGA
* * * * *
67377862 TATATGTGGCACTTAGTGTGTGATTTGACATAGCTTCAGC
1 TATATATGGCAATTAATGTGCGATTTAACATAGCTTCAGC
* *
67377902 TATATATGGCAATTAATGTGCGATTTAAGATAGCTTCGGC
1 TATATATGGCAATTAATGTGCGATTTAACATAGCTTCAGC
67377942 TAT
1 TAT
67377945 GTACGACACT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (40 bp):
TATATATGGCAATTAATGTGCGATTTAACATAGCTTCAGC
Found at i:67393692 original size:21 final size:20
Alignment explanation
Indices: 67393663--67393701 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
67393653 TTATAATGAC
67393663 CACACGGGCATGTTGCCCTTT
1 CACACGGGCATG-TGCCCTTT
* *
67393684 CACATGGGCGTGTGCCCT
1 CACACGGGCATGTGCCCT
67393702 GTTTTAAGGG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.13, C:0.33, G:0.28, T:0.26
Consensus pattern (20 bp):
CACACGGGCATGTGCCCTTT
Found at i:67412198 original size:40 final size:40
Alignment explanation
Indices: 67412107--67412276 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
67412097 TCCTCGTTCA
* * * * *
67412107 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
67412146 CATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
67412186 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
67412226 AATGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
67412266 AAGGCCTTCGG
1 AATGCCTTCGG
67412277 ATCTTAGTCC
Statistics
Matches: 112, Mismatches: 18, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 32 0.29
40 80 0.71
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:67425575 original size:16 final size:17
Alignment explanation
Indices: 67425554--67425586 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
67425544 AATATTAGGG
67425554 ACAAAAGTG-GAATTTT
1 ACAAAAGTGTGAATTTT
67425570 ACAAAAGTGTGAATTTT
1 ACAAAAGTGTGAATTTT
67425587 GGATTGAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.42, C:0.06, G:0.18, T:0.33
Consensus pattern (17 bp):
ACAAAAGTGTGAATTTT
Found at i:67428223 original size:47 final size:47
Alignment explanation
Indices: 67428154--67428415 Score: 338
Period size: 47 Copynumber: 5.6 Consensus size: 47
67428144 NNNNNNNNNN
67428154 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * * * *
67428201 ATATATAAACTTTCACCTTCATCACATCGGCTATTAGGCCTTGTTAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
67428248 ATATATACACTTTCACATTCATCACATCGGCCA-T----CTTATCACAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--CAC
*
67428292 ATATACACTACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC
1 ATAT--A-TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
67428342 ACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
67428389 ATATATGCA-TGTTCACATCCATCACAT
1 ATATATACACT-TTCACATTCATCACAT
67428416 AGAATCCTAA
Statistics
Matches: 187, Mismatches: 17, Indels: 22
0.83 0.08 0.10
Matches are distributed among these distances:
42 4 0.02
44 6 0.03
46 3 0.02
47 161 0.86
48 2 0.01
50 6 0.03
52 5 0.03
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:67428413 original size:141 final size:141
Alignment explanation
Indices: 67428159--67428415 Score: 410
Period size: 141 Copynumber: 1.8 Consensus size: 141
67428149 NNNNNATATA
* *
67428159 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAAACTTTCACCTTCATC
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATAAACTTTCACATTCATC
* * *
67428224 ACATCGGCTATTAGGCCTTGTTACATATATACACTTTCACATTCATCACATCGGCCATCTTATCA
66 ACATCGGCCATTAGGCCTTATTACATATATACACTTTCACATCCATCACATCGGCCATCTTATCA
67428289 CACATATACAC
131 CACATATACAC
* *
67428300 TACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATC
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATAAACTTTCACATTCATC
*
67428365 ACATCGGCCATTAGGCCTTATCT-CATATATGCA-TGTTCACATCCATCACAT
66 ACATCGGCCATTAGGCCTTAT-TACATATATACACT-TTCACATCCATCACAT
67428416 AGAATCCTAA
Statistics
Matches: 106, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
140 1 0.01
141 104 0.98
142 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (141 bp):
TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATAAACTTTCACATTCATC
ACATCGGCCATTAGGCCTTATTACATATATACACTTTCACATCCATCACATCGGCCATCTTATCA
CACATATACAC
Found at i:67441328 original size:27 final size:27
Alignment explanation
Indices: 67441297--67441474 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
67441287 TAAATTGTAC
67441297 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
67441324 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67441350 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
67441378 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
67441406 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67441433 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
67441460 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67441475 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:67441411 original size:82 final size:81
Alignment explanation
Indices: 67441298--67441453 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
67441288 AAATTGTACA
* *
67441298 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
67441362 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
67441379 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
67441444 TGCGAGTTGA
65 TGCGAATTGA
67441454 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:67441465 original size:82 final size:81
Alignment explanation
Indices: 67441294--67441474 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
67441284 GATTAAATTG
* *
67441294 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
67441359 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
67441375 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
67441439 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
67441457 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
67441475 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:67449402 original size:27 final size:27
Alignment explanation
Indices: 67449371--67449548 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
67449361 TAAATTGTAC
67449371 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
67449398 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67449424 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
67449452 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
67449480 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67449507 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
67449534 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67449549 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:67449485 original size:82 final size:81
Alignment explanation
Indices: 67449372--67449527 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
67449362 AAATTGTACA
* *
67449372 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
67449436 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
67449453 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
67449518 TGCGAGTTGA
65 TGCGAATTGA
67449528 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:67449539 original size:82 final size:81
Alignment explanation
Indices: 67449368--67449548 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
67449358 GATTAAATTG
* *
67449368 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
67449433 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
67449449 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
67449513 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
67449531 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
67449549 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:67451640 original size:21 final size:20
Alignment explanation
Indices: 67451600--67451640 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
67451590 CTAAACCGAT
* *
67451600 CACTTATAAAAATTTCTGAA
1 CACTTAGAAAAATTTATGAA
67451620 CACTTAGAAAAATTTGATGAA
1 CACTTAGAAAAATTT-ATGAA
67451641 AACATAGGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.46, C:0.12, G:0.10, T:0.32
Consensus pattern (20 bp):
CACTTAGAAAAATTTATGAA
Found at i:67452488 original size:43 final size:42
Alignment explanation
Indices: 67452421--67452582 Score: 141
Period size: 43 Copynumber: 3.8 Consensus size: 42
67452411 TAAGCTCGTA
* * *
67452421 CAATGCC-ATATCCCATATATGGTCTTACATGCTATCATATAT
1 CAATGCCAATGTCCCAGACATGGTCTTACATG-TATCATATAT
* * * * * *
67452463 CGATGCCACTGTCCCAGACAAGGTCTTACACGAAATCA-ATTAA
1 CAATGCCAATGTCCCAGACATGGTCTTACATG-TATCATA-TAT
* *
67452506 CAATGCCAAAGTCCCAGACATGGTCTTACATGTAATC-TCTAT
1 CAATGCCAATGTCCCAGACATGGTCTTACATGT-ATCATATAT
* *
67452548 ACAAAGCCAATGTCCCAGACATGGTCTTACGTGTA
1 -CAATGCCAATGTCCCAGACATGGTCTTACATGTA
67452583 ATCACATCTC
Statistics
Matches: 94, Mismatches: 21, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
42 10 0.11
43 84 0.89
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (42 bp):
CAATGCCAATGTCCCAGACATGGTCTTACATGTATCATATAT
Found at i:67452586 original size:86 final size:85
Alignment explanation
Indices: 67452420--67452577 Score: 203
Period size: 86 Copynumber: 1.8 Consensus size: 85
67452410 ATAAGCTCGT
* * * * * *
67452420 ACAATGCCATATCCCATATATGGTCTTACATGCTATCATATATCGATGCCACTGTCCCAGACAAG
1 ACAATGCCAAATCCCAGACATGGTCTTACATGCTATCATATATCAAAGCCAATGTCCCAGACAAG
67452485 GTCTTACACGAAATCAATTA
66 GTCTTACACGAAATCAATTA
*
67452505 ACAATGCCAAAGTCCCAGACATGGTCTTACATG-TAATC-TCTATACAAAGCCAATGTCCCAGAC
1 ACAATGCCAAA-TCCCAGACATGGTCTTACATGCT-ATCATATAT-CAAAGCCAATGTCCCAGAC
*
67452568 ATGGTCTTAC
63 AAGGTCTTAC
67452578 GTGTAATCAC
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
85 15 0.24
86 47 0.76
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.27
Consensus pattern (85 bp):
ACAATGCCAAATCCCAGACATGGTCTTACATGCTATCATATATCAAAGCCAATGTCCCAGACAAG
GTCTTACACGAAATCAATTA
Found at i:67455108 original size:29 final size:30
Alignment explanation
Indices: 67455042--67455112 Score: 69
Period size: 29 Copynumber: 2.4 Consensus size: 30
67455032 CCATATTTTT
* *
67455042 CATTTATTTCACAATTTAACCCTTCAATTTA
1 CATTT-TTTCTCAATTTAACCCTTCAATTGA
*
67455073 CA-CTTTTCTCAATTTAATCCC-T-AATTGA
1 CATTTTTTCTCAATTTAA-CCCTTCAATTGA
67455101 CATTTTTT-TCAA
1 CATTTTTTCTCAA
67455113 ATATCACTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
28 11 0.32
29 17 0.50
30 4 0.12
31 2 0.06
ACGTcount: A:0.30, C:0.23, G:0.01, T:0.46
Consensus pattern (30 bp):
CATTTTTTCTCAATTTAACCCTTCAATTGA
Found at i:67455112 original size:28 final size:29
Alignment explanation
Indices: 67455048--67455112 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 29
67455038 TTTTCATTTA
* *
67455048 TTTCACAATTTAACCCTTCAATTTACACT
1 TTTCTCAATTTAACCCTTCAATTGACACT
*
67455077 TTTCTCAATTTAATCCC-T-AATTGACATT
1 TTTCTCAATTTAA-CCCTTCAATTGACACT
*
67455105 TTTTTCAA
1 TTTCTCAA
67455113 ATATCACTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
28 15 0.48
29 13 0.42
30 3 0.10
ACGTcount: A:0.29, C:0.23, G:0.02, T:0.46
Consensus pattern (29 bp):
TTTCTCAATTTAACCCTTCAATTGACACT
Found at i:67459370 original size:30 final size:30
Alignment explanation
Indices: 67459285--67459360 Score: 152
Period size: 30 Copynumber: 2.5 Consensus size: 30
67459275 ACCTAGGGGT
67459285 AAAATGGTCATTTTGCAAAAGTATAGTGGC
1 AAAATGGTCATTTTGCAAAAGTATAGTGGC
67459315 AAAATGGTCATTTTGCAAAAGTATAGTGGC
1 AAAATGGTCATTTTGCAAAAGTATAGTGGC
67459345 AAAATGGTCATTTTGC
1 AAAATGGTCATTTTGC
67459361 CCAAATATAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 46 1.00
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.32
Consensus pattern (30 bp):
AAAATGGTCATTTTGCAAAAGTATAGTGGC
Found at i:67459792 original size:46 final size:44
Alignment explanation
Indices: 67459686--67459846 Score: 146
Period size: 46 Copynumber: 3.5 Consensus size: 44
67459676 TGGGCTATTG
** * * *
67459686 TGAGCTAGTGTAAGACCACATCTGGGACATGGCATTAGCATTAAGATGA
1 TGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCA-C-CTACGA-GA
*
67459735 -GAGCTGGTGTAAGACATGTCTGGGACATGCATCAACCT-CGAGA
1 TGAGCTAGTGTAAGACATGTCTGGGACATGCATC-ACCTACGAGA
**
67459778 TGTAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGA
1 TG--AGCTAGTGTAAGACATGTCTGGGACATGCATCACCTACGAGA
*
67459824 TGAGCCAGTGTAAGACGATGTCT
1 TGAGCTAGTGTAAGAC-ATGTCT
67459847 AAGATATGGC
Statistics
Matches: 96, Mismatches: 10, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
43 2 0.02
44 16 0.17
45 9 0.09
46 43 0.45
47 13 0.14
48 13 0.14
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (44 bp):
TGAGCTAGTGTAAGACATGTCTGGGACATGCATCACCTACGAGA
Found at i:67460002 original size:28 final size:28
Alignment explanation
Indices: 67459970--67460027 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
67459960 GTGACGTGAG
67459970 TAATACAAGTACCTATTCGTTATATATA
1 TAATACAAGTACCTATTCGTTATATATA
*
67459998 TAATACAAGTACCTATTTGTTATATATA
1 TAATACAAGTACCTATTCGTTATATATA
67460026 TA
1 TA
67460028 TAAGATGAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.41
Consensus pattern (28 bp):
TAATACAAGTACCTATTCGTTATATATA
Found at i:67461057 original size:21 final size:22
Alignment explanation
Indices: 67461018--67461058 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
67461008 TCTAATCGGT
67461018 CACACGGGTGTGTTGCCCCTCC
1 CACACGGGTGTGTTGCCCCTCC
67461040 CACACGGGTGTG-TGCCCCT
1 CACACGGGTGTGTTGCCCCT
67461059 GTGTCTAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.10, C:0.39, G:0.29, T:0.22
Consensus pattern (22 bp):
CACACGGGTGTGTTGCCCCTCC
Found at i:67462223 original size:20 final size:20
Alignment explanation
Indices: 67462200--67462253 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
67462190 AAAAATTACA
67462200 AAAAATTCAAAATAATTTTC
1 AAAAATTCAAAATAATTTTC
* * *
67462220 AAAATTTCGAAATAATTTTT
1 AAAAATTCAAAATAATTTTC
*
67462240 AAAAATTTAAAATA
1 AAAAATTCAAAATA
67462254 TTTATAAATT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.37
Consensus pattern (20 bp):
AAAAATTCAAAATAATTTTC
Found at i:67462296 original size:20 final size:19
Alignment explanation
Indices: 67462271--67462313 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
67462261 ATTTTTTTCT
*
67462271 TTTTTTTGATAAAATTATAA
1 TTTTTTT-ATAAAATAATAA
*
67462291 TTTTTTTCTAAAATAATAA
1 TTTTTTTATAAAATAATAA
67462310 TTTT
1 TTTT
67462314 AGAGACATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.58
Consensus pattern (19 bp):
TTTTTTTATAAAATAATAA
Found at i:67477745 original size:31 final size:31
Alignment explanation
Indices: 67477710--67477773 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
67477700 CCTTTTCATA
67477710 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
67477741 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
67477772 TT
1 TT
67477774 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:67478018 original size:24 final size:24
Alignment explanation
Indices: 67477967--67478061 Score: 140
Period size: 24 Copynumber: 4.0 Consensus size: 24
67477957 GCTTTATCAT
*
67477967 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
67477992 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
67478016 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
67478039 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
67478062 TCACTTCCAC
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
23 23 0.35
24 30 0.46
25 12 0.18
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:67478042 original size:23 final size:23
Alignment explanation
Indices: 67477988--67478060 Score: 128
Period size: 23 Copynumber: 3.1 Consensus size: 23
67477978 CCTAGCCTCT
*
67477988 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
67478011 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
67478035 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
67478058 TTT
1 TTT
67478061 TTCACTTCCA
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
23 26 0.54
24 22 0.46
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:67478133 original size:9 final size:9
Alignment explanation
Indices: 67478119--67478175 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
67478109 ACATCATGTG
67478119 CATATCATA
1 CATATCATA
*
67478128 CATATCATGTG
1 CATATCA--TA
67478139 CATATCATA
1 CATATCATA
* *
67478148 CATGTCATGTG
1 CATATCA--TA
67478159 CATATCATA
1 CATATCATA
67478168 CATATCAT
1 CATATCAT
67478176 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:67478136 original size:20 final size:20
Alignment explanation
Indices: 67478111--67478177 Score: 125
Period size: 20 Copynumber: 3.4 Consensus size: 20
67478101 TTATGATTAC
67478111 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
67478131 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
67478151 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
67478171 ATCATGT
1 ATCATGT
67478178 TTATCAAAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:67478142 original size:11 final size:11
Alignment explanation
Indices: 67478111--67478166 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
67478101 TTATGATTAC
67478111 ATCATGTGCAT
1 ATCATGTGCAT
*
67478122 ATCA--TACAT
1 ATCATGTGCAT
67478131 ATCATGTGCAT
1 ATCATGTGCAT
*
67478142 ATCA--TACAT
1 ATCATGTGCAT
*
67478151 GTCATGTGCAT
1 ATCATGTGCAT
67478162 ATCAT
1 ATCAT
67478167 ACATATCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:67478242 original size:25 final size:25
Alignment explanation
Indices: 67478214--67478261 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
67478204 ATATATAAAC
* * *
67478214 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
67478239 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
67478262 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:67485775 original size:27 final size:26
Alignment explanation
Indices: 67485719--67485775 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
67485709 CAACCTTAAC
* * *
67485719 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
* *
67485745 CCTAGGGTTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
67485772 CCTA
1 CCTA
67485776 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:67488611 original size:40 final size:40
Alignment explanation
Indices: 67488511--67488775 Score: 286
Period size: 40 Copynumber: 6.7 Consensus size: 40
67488501 GCTCCTCGTT
* * * *
67488511 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
67488551 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
67488590 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
67488630 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
67488670 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
67488710 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
67488751 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
67488776 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:67488735 original size:80 final size:80
Alignment explanation
Indices: 67488478--67488775 Score: 263
Period size: 80 Copynumber: 3.7 Consensus size: 80
67488468 AAATCACGTA
* ** * * *
67488478 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
67488540 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * *
67488556 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
67488619 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
67488636 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
67488700 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
67488716 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
67488776 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 50 0.27
80 106 0.58
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:67488784 original size:41 final size:41
Alignment explanation
Indices: 67488707--67488784 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
67488697 TTTGTATCTC
* * *
67488707 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
67488748 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
67488785 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:67496561 original size:40 final size:40
Alignment explanation
Indices: 67496461--67496725 Score: 286
Period size: 40 Copynumber: 6.7 Consensus size: 40
67496451 GCTCCTCGTT
* * * *
67496461 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
67496501 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
67496540 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
67496580 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
67496620 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
67496660 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
67496701 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
67496726 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:67496685 original size:80 final size:80
Alignment explanation
Indices: 67496428--67496725 Score: 263
Period size: 80 Copynumber: 3.7 Consensus size: 80
67496418 AAATCACGTA
* ** * * *
67496428 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
67496490 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * *
67496506 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
67496569 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
67496586 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
67496650 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
67496666 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
67496726 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 50 0.27
80 106 0.58
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:67496734 original size:41 final size:41
Alignment explanation
Indices: 67496657--67496734 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
67496647 TTTGTATCTC
* * *
67496657 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
67496698 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
67496735 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:67509742 original size:27 final size:28
Alignment explanation
Indices: 67509712--67509768 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
67509702 ATTTTTGGTG
67509712 AAATGAGCTATTTG-GG-CTAATTTGTGA
1 AAATGAGCT-TTTGAGGACTAATTTGTGA
*
67509739 AAATGAGGTTTTGAAGGACTAATTTGTGA
1 AAATGAGCTTTTG-AGGACTAATTTGTGA
67509768 A
1 A
67509769 TTAAACATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 4 0.15
27 8 0.31
28 2 0.08
29 12 0.46
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.35
Consensus pattern (28 bp):
AAATGAGCTTTTGAGGACTAATTTGTGA
Found at i:67510248 original size:44 final size:43
Alignment explanation
Indices: 67510174--67510334 Score: 179
Period size: 42 Copynumber: 3.7 Consensus size: 43
67510164 GTTGGTATTA
*
67510174 ATCTGAA-TTATCGTGTAAGACCGTGTCTGGGACACAGGCATCG
1 ATCTGAATTTA-CGTGTAAGACCATGTCTGGGACACAGGCATCG
*
67510217 ATTTGAAATTTACGTGTAAGACCATGTCTGGGACATC-GGCATCG
1 ATCTG-AATTTACGTGTAAGACCATGTCTGGGACA-CAGGCATCG
* * *
67510261 TATCT-AATTT-CGTATAAGACCTTGTCTGGGACAGAGGCATCG
1 -ATCTGAATTTACGTGTAAGACCATGTCTGGGACACAGGCATCG
* *
67510303 ATACTGAA-TTACATGTAAGACCACGTCTGGGA
1 AT-CTGAATTTACGTGTAAGACCATGTCTGGGA
67510335 TGTTGGCTTA
Statistics
Matches: 100, Mismatches: 10, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
41 2 0.02
42 32 0.32
43 28 0.28
44 31 0.31
45 7 0.07
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (43 bp):
ATCTGAATTTACGTGTAAGACCATGTCTGGGACACAGGCATCG
Found at i:67510292 original size:42 final size:41
Alignment explanation
Indices: 67510174--67510334 Score: 171
Period size: 44 Copynumber: 3.8 Consensus size: 41
67510164 GTTGGTATTA
*
67510174 ATCTGAATTATCGTGTAAGACCGTGTCTGGGACACAGGCATCG
1 ATCTGAATT-TCGTGTAAGACCATGTCTGGGACAC-GGCATCG
*
67510217 ATTTGAAATTTACGTGTAAGACCATGTCTGGGACATCGGCATCG
1 ATCTG-AATTT-CGTGTAAGACCATGTCTGGGACA-CGGCATCG
* * *
67510261 TATCT-AATTTCGTATAAGACCTTGTCTGGGACAGAGGCATCG
1 -ATCTGAATTTCGTGTAAGACCATGTCTGGGACA-CGGCATCG
* * *
67510303 ATACTGAATTACATGTAAGACCACGTCTGGGA
1 AT-CTGAATTTCGTGTAAGACCATGTCTGGGA
67510335 TGTTGGCTTA
Statistics
Matches: 100, Mismatches: 12, Indels: 12
0.81 0.10 0.10
Matches are distributed among these distances:
41 2 0.02
42 30 0.30
43 31 0.31
44 33 0.33
45 4 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (41 bp):
ATCTGAATTTCGTGTAAGACCATGTCTGGGACACGGCATCG
Found at i:67518440 original size:27 final size:26
Alignment explanation
Indices: 67518392--67518451 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
67518382 GCGAGGCTGC
*
67518392 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
67518419 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
67518445 CAGATAT
1 CAGATAT
67518452 ATATATGTGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:67518496 original size:71 final size:67
Alignment explanation
Indices: 67518419--67518560 Score: 178
Period size: 67 Copynumber: 2.1 Consensus size: 67
67518409 TCACCAGATA
* * * *
67518419 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGTG-GAAGCCACCAGATTGCAGCG
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTG-GCGAAGACACCAGATTGCAGCG
67518483 AGGCTGC
61 AGGCTGC
* *
67518490 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGACACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGACACCAGATTGCAGCGAGGCT
67518555 GC
66 GC
67518557 CAGA
1 CAGA
67518561 ACGCTTCCTC
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
66 1 0.02
67 38 0.59
71 25 0.39
ACGTcount: A:0.31, C:0.21, G:0.29, T:0.19
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGACACCAGATTGCAGCGAGGCT
GC
Found at i:67518538 original size:27 final size:26
Alignment explanation
Indices: 67518490--67518541 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
67518480 GCGAGGCTGC
*
67518490 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGACACCAGAA
* *
67518516 CAGATATATGTGGCGAGGACACCAGA
1 CAGATAT-TGTGACGAAGACACCAGA
67518542 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.37, C:0.19, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGACACCAGAA
Found at i:67519136 original size:26 final size:27
Alignment explanation
Indices: 67519107--67519160 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
67519097 TCACACAAGT
*
67519107 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
67519133 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
67519160 T
1 T
67519161 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:67521076 original size:30 final size:30
Alignment explanation
Indices: 67521042--67521102 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
67521032 TTAAGTCACG
67521042 ATACATTTTACTCCCTCCAGGATGCATAGC
1 ATACATTTTACTCCCTCCAGGATGCATAGC
* *
67521072 ATACATTTTACTCCCTCTAGGATGCGTAGC
1 ATACATTTTACTCCCTCCAGGATGCATAGC
67521102 A
1 A
67521103 CACAGACCTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (30 bp):
ATACATTTTACTCCCTCCAGGATGCATAGC
Found at i:67522582 original size:47 final size:48
Alignment explanation
Indices: 67522483--67522583 Score: 116
Period size: 47 Copynumber: 2.1 Consensus size: 48
67522473 TGTGAGTATT
* ** *
67522483 GAGATCCCGTATAAGACCATATCGAGGATATGGCAATGGCATCGAGAT
1 GAGATCCCATATAAGACCATATCGAGGATATGGCAATAACATCGAGAA
* * *
67522531 GAGATCCCATCTAAGACCATATTG-GGATATGGC-ATCAACATCGATAA
1 GAGATCCCATATAAGACCATATCGAGGATATGGCAAT-AACATCGAGAA
67522578 GAGATC
1 GAGATC
67522584 TTGTATAAGA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
46 2 0.04
47 22 0.49
48 21 0.47
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.22
Consensus pattern (48 bp):
GAGATCCCATATAAGACCATATCGAGGATATGGCAATAACATCGAGAA
Found at i:67536429 original size:27 final size:27
Alignment explanation
Indices: 67536398--67536575 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
67536388 TAAATTGTAC
67536398 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
67536425 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67536451 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
67536479 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
67536507 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67536534 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
67536561 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67536576 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:67536512 original size:82 final size:81
Alignment explanation
Indices: 67536399--67536554 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
67536389 AAATTGTACA
* *
67536399 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
67536463 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
67536480 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
67536545 TGCGAGTTGA
65 TGCGAATTGA
67536555 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:67536566 original size:82 final size:81
Alignment explanation
Indices: 67536395--67536575 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
67536385 GATTAAATTG
* *
67536395 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
67536460 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
67536476 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
67536540 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
67536558 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
67536576 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:67536586 original size:27 final size:27
Alignment explanation
Indices: 67536480--67536586 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
67536470 TGACCATGCG
* * * *
67536480 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
67536508 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
67536535 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
67536562 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
67536587 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:67541224 original size:48 final size:48
Alignment explanation
Indices: 67541154--67541430 Score: 263
Period size: 48 Copynumber: 5.8 Consensus size: 48
67541144 TGTGAGTATT
* * * * * * *
67541154 GAGATCTCGTATAAGATCATATCTGGGATATGGAATCAGCTTCTA-AA
1 GAGATCCCATATAAGACCATATCTGGGATATGGCATCGGCATCGATAA
* * *
67541201 TGAGATACCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATAA
1 -GAGATCCCATATAAGACCATATCTGGGATATGGCATCGGCATCGATAA
* * *
67541250 GAGATCTCATATAAGACCATGTCTGGGATATGGCATCGGCATTGATAA
1 GAGATCCCATATAAGACCATATCTGGGATATGGCATCGGCATCGATAA
* * * *
67541298 GAGATCCCATATAAGACCATGTCTGGGACATGGTATCGGCATC-AGTAT
1 GAGATCCCATATAAGACCATATCTGGGATATGGCATCGGCATCGA-TAA
* * * * **
67541346 GAGATCCCATGTAAGACCATATATGGGATATGGCATTGGCATCAATGT
1 GAGATCCCATATAAGACCATATCTGGGATATGGCATCGGCATCGATAA
* * * *
67541394 GAGATTCCGTATAAGATCATGA-CTGGGACATGGCATC
1 GAGATCCCATATAAGACCAT-ATCTGGGATATGGCATC
67541431 TGAACCGTTA
Statistics
Matches: 190, Mismatches: 35, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
47 1 0.01
48 185 0.97
49 4 0.02
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (48 bp):
GAGATCCCATATAAGACCATATCTGGGATATGGCATCGGCATCGATAA
Found at i:67541443 original size:96 final size:96
Alignment explanation
Indices: 67541148--67541462 Score: 253
Period size: 96 Copynumber: 3.3 Consensus size: 96
67541138 AAGACATGTG
* * * * * * * * *
67541148 AGTATTGAGATCTCGTATAAGATCATATCTGGGATATGGAATCAGCTTCTAA-ATGAGATACCAT
1 AGTA-TGAGATCTCATGTAAGACCATATATGGGATATGGCATCGGCATC-AATAAGAGATCCCAT
* * * *
67541212 GTAAGACCAT-ATCTGGGATATGGCATTGGCATC
64 ATAAGACCATGA-CTGGGACATGGCATCGGCAAC
* * * * **
67541245 -GATAAGAGATCTCATATAAGACCATGTCTGGGATATGGCATCGGCATTGATAAGAGATCCCATA
1 AG-TATGAGATCTCATGTAAGACCATATATGGGATATGGCATCGGCATCAATAAGAGATCCCATA
* * *
67541309 TAAGACCATGTCTGGGACATGGTATCGGCATC
65 TAAGACCATGACTGGGACATGGCATCGGCAAC
* * ** * *
67541341 AGTATGAGATCCCATGTAAGACCATATATGGGATATGGCATTGGCATCAATGTGAGATTCCGTAT
1 AGTATGAGATCTCATGTAAGACCATATATGGGATATGGCATCGGCATCAATAAGAGATCCCATAT
* *
67541406 AAGATCATGACTGGGACATGGCATCTG-AAC
66 AAGACCATGACTGGGACATGGCATCGGCAAC
* *
67541436 CGTTATGAGA-CTTTATGTAAGACCATA
1 AG-TATGAGATC-TCATGTAAGACCATA
67541463 GCTGGGTTGT
Statistics
Matches: 176, Mismatches: 36, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
95 5 0.03
96 168 0.95
97 3 0.02
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.28
Consensus pattern (96 bp):
AGTATGAGATCTCATGTAAGACCATATATGGGATATGGCATCGGCATCAATAAGAGATCCCATAT
AAGACCATGACTGGGACATGGCATCGGCAAC
Found at i:67546413 original size:43 final size:43
Alignment explanation
Indices: 67546366--67546466 Score: 114
Period size: 43 Copynumber: 2.3 Consensus size: 43
67546356 TAGCCCAGCT
67546366 ATGGTCTCACACGA-AATCAAATAACGATGCCAATGTCCCAAAC
1 ATGGTCTCACAC-ATAATCAAATAACGATGCCAATGTCCCAAAC
* * * * ***
67546409 ATGGTCTTACACATAATCACATAATGATTCCAATGTCCCGGGC
1 ATGGTCTCACACATAATCAAATAACGATGCCAATGTCCCAAAC
*
67546452 ATGGTCTTACACATA
1 ATGGTCTCACACATA
67546467 TTCACATCTC
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 1 0.02
43 49 0.98
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.25
Consensus pattern (43 bp):
ATGGTCTCACACATAATCAAATAACGATGCCAATGTCCCAAAC
Found at i:67553714 original size:3 final size:3
Alignment explanation
Indices: 67553706--67553734 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
67553696 TTAAGTCTTA
67553706 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
67553735 GTCTAATGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:67556625 original size:27 final size:27
Alignment explanation
Indices: 67556562--67556627 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
67556552 GCCCTAAAAT
* ** *
67556562 AGGTAAAATAACCATAATACCCCTGTA
1 AGGTAAAATGACTGTAATACACCTGTA
*
67556589 AGGTAAAATGACTGTAATACACTTGTA
1 AGGTAAAATGACTGTAATACACCTGTA
*
67556616 TGGTAAAATGAC
1 AGGTAAAATGAC
67556628 GATTTTGCCC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.26
Consensus pattern (27 bp):
AGGTAAAATGACTGTAATACACCTGTA
Found at i:67556842 original size:26 final size:26
Alignment explanation
Indices: 67556813--67556865 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
67556803 GCTTTGCCAC
67556813 CATTACTATT-TCTGACAGCTATGCTG
1 CATTACTATTAT-TGACAGCTATGCTG
* * *
67556839 CATTATTATTATTGGCAGCTTTGCTG
1 CATTACTATTATTGACAGCTATGCTG
67556865 C
1 C
67556866 GATTTTGGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.42
Consensus pattern (26 bp):
CATTACTATTATTGACAGCTATGCTG
Found at i:67557054 original size:33 final size:33
Alignment explanation
Indices: 67557006--67557071 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
67556996 TTAGGTCTAC
* * *
67557006 ACTGTTACTGTATAGGGCTAAGGCCCAGACTGT
1 ACTGATACTGAATAGGGCTAAGACCCAGACTGT
*
67557039 ACTGATACTGAATAGGGCTCAGACCCAGACTGT
1 ACTGATACTGAATAGGGCTAAGACCCAGACTGT
67557072 TACTCTATGC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (33 bp):
ACTGATACTGAATAGGGCTAAGACCCAGACTGT
Found at i:67559916 original size:43 final size:42
Alignment explanation
Indices: 67559823--67559925 Score: 120
Period size: 43 Copynumber: 2.4 Consensus size: 42
67559813 TACTGAGATG
* *
67559823 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGAATTT
1 TGATTACGTGTAAGACCATGTCTAGGACATTGGCATTGAA-TT
*
67559866 TGATTACGTGTAAGACCATGTCTAGGATATTGGTATCATT-AA-T
1 TGATTACGTGTAAGACCATGTCTAGGACATTGG---CATTGAATT
*
67559909 TGGTTACGTGTAAGACC
1 TGATTACGTGTAAGACC
67559926 CTATCTGGGA
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
43 47 0.89
45 2 0.04
46 4 0.08
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (42 bp):
TGATTACGTGTAAGACCATGTCTAGGACATTGGCATTGAATT
Found at i:67569187 original size:23 final size:23
Alignment explanation
Indices: 67569158--67569211 Score: 108
Period size: 23 Copynumber: 2.3 Consensus size: 23
67569148 ATTATGTAGA
67569158 ACCAAAATACTTCAATTTAAAAT
1 ACCAAAATACTTCAATTTAAAAT
67569181 ACCAAAATACTTCAATTTAAAAT
1 ACCAAAATACTTCAATTTAAAAT
67569204 ACCAAAAT
1 ACCAAAAT
67569212 CGATAAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.28
Consensus pattern (23 bp):
ACCAAAATACTTCAATTTAAAAT
Found at i:67573158 original size:25 final size:26
Alignment explanation
Indices: 67573088--67573228 Score: 87
Period size: 25 Copynumber: 5.6 Consensus size: 26
67573078 CCAGATGACA
*
67573088 CACCACAAAGGCTTTCTAGA-GAGTT
1 CACCACAAAGGCTTTCTAAAGGAGTT
* * * *
67573113 TACCGCAAAGGCATTCCAAAGGA-TT
1 CACCACAAAGGCTTTCTAAAGGAGTT
*
67573138 CACCACAAAGACTTTCTAAA-GAGTT
1 CACCACAAAGGCTTTCTAAAGGAGTT
* * * ***
67573163 CGCCAAAAAGGCCTTCCGGA-GAGTT
1 CACCACAAAGGCTTTCTAAAGGAGTT
* * *
67573188 CACCATAAAGGCTTT-TCGAA-CAGTT
1 CACCACAAAGGCTTTCT-AAAGGAGTT
*
67573213 CACCACAAAGACTTTC
1 CACCACAAAGGCTTTC
67573229 CTAAGAATCT
Statistics
Matches: 87, Mismatches: 25, Indels: 7
0.73 0.21 0.06
Matches are distributed among these distances:
24 2 0.02
25 83 0.95
26 2 0.02
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (26 bp):
CACCACAAAGGCTTTCTAAAGGAGTT
Found at i:67578610 original size:55 final size:54
Alignment explanation
Indices: 67578515--67578664 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
67578505 CTACTTTGTT
* ** * *
67578515 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
67578569 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
67578624 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
67578665 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:67578627 original size:27 final size:27
Alignment explanation
Indices: 67578487--67578664 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
67578477 TAAATTGTAC
67578487 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
67578514 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
67578540 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
67578568 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
67578596 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
67578623 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
67578650 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67578665 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Done.