Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 198 of 235
Found at i:67578628 original size:82 final size:81
Alignment explanation
Indices: 67578488--67578643 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
67578478 AAATTGTACA
* * * *
67578488 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
67578553 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
67578569 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
67578632 TGTGCGAGTTGA
63 TGTGCGAATTGA
67578644 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:67583229 original size:60 final size:60
Alignment explanation
Indices: 67583136--67583255 Score: 231
Period size: 60 Copynumber: 2.0 Consensus size: 60
67583126 TCACAAAAGT
67583136 CTCAAATATTTGATGACTCAACGGGACTTGAATCTGCGACAAAGACGTTGGCTTGAATTG
1 CTCAAATATTTGATGACTCAACGGGACTTGAATCTGCGACAAAGACGTTGGCTTGAATTG
*
67583196 CTCAAATCTTTGATGACTCAACGGGACTTGAATCTGCGACAAAGACGTTGGCTTGAATTG
1 CTCAAATATTTGATGACTCAACGGGACTTGAATCTGCGACAAAGACGTTGGCTTGAATTG
67583256 TTGAAGGATT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.28
Consensus pattern (60 bp):
CTCAAATATTTGATGACTCAACGGGACTTGAATCTGCGACAAAGACGTTGGCTTGAATTG
Found at i:67583802 original size:61 final size:61
Alignment explanation
Indices: 67583707--67583831 Score: 241
Period size: 61 Copynumber: 2.0 Consensus size: 61
67583697 TTTGTTTCGA
*
67583707 GATGTTTAATATGTCAGCAAGTGAAAGCGGAACATCAAGTGCCTTCAGGGTTACTTCAGCC
1 GATGTTTAATATGTCAACAAGTGAAAGCGGAACATCAAGTGCCTTCAGGGTTACTTCAGCC
67583768 GATGTTTAATATGTCAACAAGTGAAAGCGGAACATCAAGTGCCTTCAGGGTTACTTCAGCC
1 GATGTTTAATATGTCAACAAGTGAAAGCGGAACATCAAGTGCCTTCAGGGTTACTTCAGCC
67583829 GAT
1 GAT
67583832 CATGATACCC
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 63 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.26
Consensus pattern (61 bp):
GATGTTTAATATGTCAACAAGTGAAAGCGGAACATCAAGTGCCTTCAGGGTTACTTCAGCC
Found at i:67584249 original size:66 final size:66
Alignment explanation
Indices: 67584143--67584275 Score: 257
Period size: 66 Copynumber: 2.0 Consensus size: 66
67584133 TTTCATCCCC
*
67584143 AAACCGATGGTCAATCCGAGCGGATAATTCAGATACTCGAGGATATGCTGAGATGCTGCATCCTT
1 AAACCGATGGTCAAGCCGAGCGGATAATTCAGATACTCGAGGATATGCTGAGATGCTGCATCCTT
67584208 G
66 G
67584209 AAACCGATGGTCAAGCCGAGCGGATAATTCAGATACTCGAGGATATGCTGAGATGCTGCATCCTT
1 AAACCGATGGTCAAGCCGAGCGGATAATTCAGATACTCGAGGATATGCTGAGATGCTGCATCCTT
67584274 G
66 G
67584275 A
1 A
67584276 GTTTAGTGGT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.23
Consensus pattern (66 bp):
AAACCGATGGTCAAGCCGAGCGGATAATTCAGATACTCGAGGATATGCTGAGATGCTGCATCCTT
G
Found at i:67586806 original size:55 final size:54
Alignment explanation
Indices: 67586711--67586860 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
67586701 CTACTTTGTT
* ** * *
67586711 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
67586765 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
67586820 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
67586861 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:67586823 original size:27 final size:27
Alignment explanation
Indices: 67586683--67586860 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
67586673 TAAATTGTAC
67586683 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
67586710 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
67586736 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
67586764 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
67586792 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
67586819 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
67586846 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67586861 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:67586824 original size:82 final size:81
Alignment explanation
Indices: 67586684--67586839 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
67586674 AAATTGTACA
* * * *
67586684 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
67586749 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
67586765 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
67586828 TGTGCGAGTTGA
63 TGTGCGAATTGA
67586840 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:67586979 original size:24 final size:24
Alignment explanation
Indices: 67586951--67586999 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
67586941 AGTGTCTTGA
67586951 GGACATGGCTAATATGTGCTATGC
1 GGACATGGCTAATATGTGCTATGC
67586975 GGACATGGCTAATATGTGCTATGC
1 GGACATGGCTAATATGTGCTATGC
67586999 G
1 G
67587000 CATACTTGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.29
Consensus pattern (24 bp):
GGACATGGCTAATATGTGCTATGC
Found at i:67591231 original size:73 final size:73
Alignment explanation
Indices: 67591112--67591256 Score: 236
Period size: 73 Copynumber: 2.0 Consensus size: 73
67591102 CTAAAGCTCC
* * * *
67591112 AATTTTGGTGCAACCCGAATCGGGTAAAGAGTTTGTCGTTTATAGTGACGCATCCCTACTCGGGT
1 AATTTTAGTGCAACCCGAATCAGGCAAAGAGTTTGTCATTTATAGTGACGCATCCCTACTCGGGT
67591177 TGGGTTGT
66 TGGGTTGT
* *
67591185 AATTTTAGTGCAACCCTAATCAGGCAAAGAGTTTGTCATTTATAGTGACGCATCCCTACTTGGGT
1 AATTTTAGTGCAACCCGAATCAGGCAAAGAGTTTGTCATTTATAGTGACGCATCCCTACTCGGGT
67591250 TGGGTTG
66 TGGGTTG
67591257 CGTATTGATG
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
73 66 1.00
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (73 bp):
AATTTTAGTGCAACCCGAATCAGGCAAAGAGTTTGTCATTTATAGTGACGCATCCCTACTCGGGT
TGGGTTGT
Found at i:67591242 original size:40 final size:38
Alignment explanation
Indices: 67591137--67591242 Score: 87
Period size: 36 Copynumber: 2.9 Consensus size: 38
67591127 CGAATCGGGT
* *
67591137 AAAGAGTTTGTCGTTTATAGTGACGCATCCCTACTCGG
1 AAAGAGTTTGTCATTTATAGTGACGCATCCCTAATCGG
*** * * *
67591175 GTTG-GGTTGTAATTT-TAGT---GCAACCCTAATCAGG
1 AAAGAGTTTGTCATTTATAGTGACGCATCCCTAATC-GG
67591209 CAAAGAGTTTGTCATTTATAGTGACGCATCCCTA
1 -AAAGAGTTTGTCATTTATAGTGACGCATCCCTA
67591243 CTTGGGTTGG
Statistics
Matches: 47, Mismatches: 14, Indels: 12
0.64 0.19 0.16
Matches are distributed among these distances:
33 10 0.21
34 2 0.04
35 1 0.02
36 13 0.28
37 12 0.26
38 1 0.02
40 8 0.17
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (38 bp):
AAAGAGTTTGTCATTTATAGTGACGCATCCCTAATCGG
Found at i:67594918 original size:55 final size:54
Alignment explanation
Indices: 67594823--67594972 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
67594813 CTACTTTGTT
* ** * *
67594823 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
67594877 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
67594932 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
67594973 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:67594935 original size:27 final size:27
Alignment explanation
Indices: 67594795--67594972 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
67594785 TAAATTGTAC
67594795 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
67594822 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
67594848 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
67594876 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
67594904 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
67594931 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
67594958 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67594973 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:67594936 original size:82 final size:81
Alignment explanation
Indices: 67594796--67594951 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
67594786 AAATTGTACA
* * * *
67594796 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
67594861 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
67594877 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
67594940 TGTGCGAGTTGA
63 TGTGCGAATTGA
67594952 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:67602924 original size:55 final size:54
Alignment explanation
Indices: 67602829--67602978 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
67602819 CTACTTTGTT
* ** * *
67602829 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
67602883 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
67602938 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
67602979 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:67602941 original size:27 final size:27
Alignment explanation
Indices: 67602801--67602978 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
67602791 TAAATTGTAC
67602801 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
67602828 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
67602854 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
67602882 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
67602910 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
67602937 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
67602964 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67602979 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:67602942 original size:82 final size:81
Alignment explanation
Indices: 67602802--67602957 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
67602792 AAATTGTACA
* * * *
67602802 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
67602867 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
67602883 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
67602946 TGTGCGAGTTGA
63 TGTGCGAATTGA
67602958 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:67604955 original size:24 final size:24
Alignment explanation
Indices: 67604923--67604979 Score: 114
Period size: 24 Copynumber: 2.4 Consensus size: 24
67604913 TCAGGAGAGA
67604923 ATTTAGGAGTTGATAAGGGATAGG
1 ATTTAGGAGTTGATAAGGGATAGG
67604947 ATTTAGGAGTTGATAAGGGATAGG
1 ATTTAGGAGTTGATAAGGGATAGG
67604971 ATTTAGGAG
1 ATTTAGGAG
67604980 CATATAAGGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.37, T:0.30
Consensus pattern (24 bp):
ATTTAGGAGTTGATAAGGGATAGG
Found at i:67604986 original size:24 final size:24
Alignment explanation
Indices: 67604923--67604990 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
67604913 TCAGGAGAGA
*
67604923 ATTTAGGAGTTGATAAGGGATAGG
1 ATTTAGGAGATGATAAGGGATAGG
*
67604947 ATTTAGGAGTTGATAAGGGATAGG
1 ATTTAGGAGATGATAAGGGATAGG
67604971 ATTTAGGAGCAT-ATAAGGGA
1 ATTTAGGAG-ATGATAAGGGA
67604991 GGAAATCTAG
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
24 41 0.98
25 1 0.02
ACGTcount: A:0.35, C:0.01, G:0.35, T:0.28
Consensus pattern (24 bp):
ATTTAGGAGATGATAAGGGATAGG
Found at i:67606448 original size:27 final size:27
Alignment explanation
Indices: 67606408--67606518 Score: 127
Period size: 27 Copynumber: 4.1 Consensus size: 27
67606398 AGGAAGCGTC
*
67606408 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
67606435 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* *
67606462 CTGGTGGCTGTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
67606490 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
67606516 CTG
1 CTG
67606519 TCAGCTATGC
Statistics
Matches: 72, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 7 0.10
27 48 0.67
28 17 0.24
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:67606514 original size:54 final size:54
Alignment explanation
Indices: 67606408--67606518 Score: 161
Period size: 54 Copynumber: 2.1 Consensus size: 54
67606398 AGGAAGCGTC
* *
67606408 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
67606462 CTGGTGGCTGTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
67606516 CTG
1 CTG
67606519 TCAGCTATGC
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:67608695 original size:207 final size:207
Alignment explanation
Indices: 67608337--67608752 Score: 751
Period size: 207 Copynumber: 2.0 Consensus size: 207
67608327 AAACCATCCT
*
67608337 AATACTTGCATATTCAAAAACAAAACACACACACACAAAGTAAATAATTTTTTAAAACAATTTAA
1 AATACTTGCATATTCAAAAACAAAACACACACACACAAAGTAAATAAGTTTTTAAAACAATTTAA
*
67608402 AATTACAAGTGTTAGGGATTCAGAGTTCACCGATGGCGAGTTTCTTTTCGGCTACGGTTTCAACG
66 AATTACAAGTGTTAGGGATTCAGAGTTCACCGATGGCGAGTTTCTTTTCAGCTACGGTTTCAACG
* **
67608467 GACACGCAGCAGCCAACGGGAGCTAGCAGTTCCCATAGACTGTGAACTCCTATTTTGGCTTGCTC
131 GACACGCAGCAGCCAACGGGAGCTAACAGTTCCCATAGACCATGAACTCCTATTTTGGCTTGCTC
67608532 AATAAGAATTCA
196 AATAAGAATTCA
67608544 AATACTTGCATATTCAAAAACAAAACACACACACACAAAGTAAATAAGTTTTTAAAACAATTTAA
1 AATACTTGCATATTCAAAAACAAAACACACACACACAAAGTAAATAAGTTTTTAAAACAATTTAA
67608609 AATTACAAGTGTTAGGGATTCAGAGTTCACCGATGGCGAGTTTCTTTTCAGCTACGGTTTCAACG
66 AATTACAAGTGTTAGGGATTCAGAGTTCACCGATGGCGAGTTTCTTTTCAGCTACGGTTTCAACG
* * * *
67608674 GACACGCAGCGGCCGACGGGAGCTAACAGTTCCCATAGACCATGAACTCCTATTTTGGTTTGTTC
131 GACACGCAGCAGCCAACGGGAGCTAACAGTTCCCATAGACCATGAACTCCTATTTTGGCTTGCTC
67608739 AATAAGAATTCA
196 AATAAGAATTCA
67608751 AA
1 AA
67608753 ATCTTTTTTT
Statistics
Matches: 200, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
207 200 1.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.27
Consensus pattern (207 bp):
AATACTTGCATATTCAAAAACAAAACACACACACACAAAGTAAATAAGTTTTTAAAACAATTTAA
AATTACAAGTGTTAGGGATTCAGAGTTCACCGATGGCGAGTTTCTTTTCAGCTACGGTTTCAACG
GACACGCAGCAGCCAACGGGAGCTAACAGTTCCCATAGACCATGAACTCCTATTTTGGCTTGCTC
AATAAGAATTCA
Found at i:67609921 original size:7 final size:7
Alignment explanation
Indices: 67609837--67610003 Score: 88
Period size: 7 Copynumber: 23.4 Consensus size: 7
67609827 CCTTATCCTC
*
67609837 TAAACCC
1 TAAACCA
*
67609844 TAAATCA
1 TAAACCA
67609851 TAAACCA
1 TAAACCA
67609858 TAAACCA
1 TAAACCA
*
67609865 CT-AACCC
1 -TAAACCA
* *
67609872 TTAACCTC
1 TAAACC-A
* *
67609880 TAACCCC
1 TAAACCA
*
67609887 TAAACCT
1 TAAACCA
67609894 TAAACCA
1 TAAACCA
67609901 TAAACCA
1 TAAACCA
67609908 TAAACCA
1 TAAACCA
67609915 TAAACCA
1 TAAACCA
* *
67609922 TAATCCT
1 TAAACCA
67609929 TAAACTCA
1 TAAAC-CA
* *
67609937 TAATCTA
1 TAAACCA
*
67609944 TAAACCT
1 TAAACCA
67609951 TAAA--A
1 TAAACCA
*
67609956 TAGTAACTCC
1 TA--AAC-CA
*
67609966 TAAACCT
1 TAAACCA
*
67609973 TAAACCC
1 TAAACCA
*
67609980 TAAACTA
1 TAAACCA
*
67609987 TAAACCC
1 TAAACCA
*
67609994 TAAACTA
1 TAAACCA
67610001 TAA
1 TAA
67610004 CGATAATTAA
Statistics
Matches: 123, Mismatches: 28, Indels: 18
0.73 0.17 0.11
Matches are distributed among these distances:
5 2 0.02
6 1 0.01
7 104 0.85
8 14 0.11
10 2 0.02
ACGTcount: A:0.47, C:0.29, G:0.01, T:0.23
Consensus pattern (7 bp):
TAAACCA
Found at i:67609998 original size:21 final size:21
Alignment explanation
Indices: 67609837--67610003 Score: 104
Period size: 21 Copynumber: 7.8 Consensus size: 21
67609827 CCTTATCCTC
* *
67609837 TAAACCCTAAATCATAAACCA
1 TAAACCCTAAACCATAAACTA
* * * *
67609858 TAAACCACTAACCCTTAACCTC
1 TAAACC-CTAAACCATAAACTA
* * *
67609880 TAACCCCTAAACCTTAAACCA
1 TAAACCCTAAACCATAAACTA
* *
67609901 TAAACCATAAACCATAAACCA
1 TAAACCCTAAACCATAAACTA
* * *
67609922 TAATCCTTAAACTCATAATCTA
1 TAAACCCTAAAC-CATAAACTA
* *
67609944 TAAACCTTAAA--ATAGTAACTCC
1 TAAACCCTAAACCATA--AACT-A
* *
67609966 TAAACCTTAAACCCTAAACTA
1 TAAACCCTAAACCATAAACTA
*
67609987 TAAACCCTAAACTATAA
1 TAAACCCTAAACCATAA
67610004 CGATAATTAA
Statistics
Matches: 113, Mismatches: 26, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
19 3 0.03
21 62 0.55
22 46 0.41
24 2 0.02
ACGTcount: A:0.47, C:0.29, G:0.01, T:0.23
Consensus pattern (21 bp):
TAAACCCTAAACCATAAACTA
Found at i:67610753 original size:39 final size:40
Alignment explanation
Indices: 67610708--67610875 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
67610698 CGGGGTTTAG
* * *
67610708 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
67610747 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
67610787 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
67610827 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
67610868 CCGGATAT
1 CCGGATAT
67610876 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:67610858 original size:41 final size:40
Alignment explanation
Indices: 67610731--67610875 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
67610721 CTCGCACAAG
* * * * *
67610731 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
67610771 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
67610811 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
67610852 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
67610876 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:67612106 original size:38 final size:38
Alignment explanation
Indices: 67612064--67612139 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
67612054 CAAGAACTCC
67612064 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
*
67612102 TTCCTCCTTCCTTAGAATTTTTGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
67612140 AAAGGATGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.33
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:67618346 original size:47 final size:47
Alignment explanation
Indices: 67618228--67618573 Score: 575
Period size: 47 Copynumber: 7.3 Consensus size: 47
67618218 NNNNNNNGTA
*
67618228 TATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
67618275 TATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
67618324 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
67618371 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
67618418 TATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
67618465 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
67618512 TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
67618559 TATAAATGTGATAAG
1 TATATATGTGATAAG
67618574 TCCCGAAGGG
Statistics
Matches: 284, Mismatches: 13, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 237 0.83
49 47 0.17
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:67620670 original size:29 final size:29
Alignment explanation
Indices: 67620635--67620708 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
67620625 GTTGTGAGAT
* *
67620635 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* *
67620664 TGGCACTAAGTGTACGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
67620693 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
67620709 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:67621143 original size:40 final size:40
Alignment explanation
Indices: 67621096--67621412 Score: 436
Period size: 40 Copynumber: 7.9 Consensus size: 40
67621086 GAGTTACTAA
*
67621096 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGAGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
67621136 ATTCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
67621176 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
67621216 ATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
67621256 ATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
67621296 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* ** * * * * *
67621336 ATCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
67621376 ATCCGGGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
67621413 CGTGTATTCG
Statistics
Matches: 248, Mismatches: 29, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 248 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:67621154 original size:80 final size:80
Alignment explanation
Indices: 67621017--67621412 Score: 449
Period size: 80 Copynumber: 5.0 Consensus size: 80
67621007 TCGAATGATG
** ** *
67621017 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAG-GC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TGTATCCGGGCTAAG-TCCCGAAGAGC
** * * *
67621078 ATTGGTGCGAGTTACTAAA
63 ATTCATGCTAGTGA-TATA
* *
67621097 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGAGATGTATTCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
* *
67621162 CATGCTAGCGATGTA
66 CATGCTAGTGATATA
*
67621177 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
67621242 CATGCTAGTGATATA
66 CATGCTAGTGATATA
* * *
67621257 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
*
67621322 CGTGCTAGTGATATA
66 CATGCTAGTGATATA
* ** * * * * * * * *
67621337 TCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGTAAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
*
67621402 CATGCTGGTGA
66 CATGCTAGTGA
67621413 CGTGTATTCG
Statistics
Matches: 276, Mismatches: 36, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
79 1 0.00
80 252 0.91
81 17 0.06
82 6 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
CATGCTAGTGATATA
Found at i:67628393 original size:40 final size:39
Alignment explanation
Indices: 67628356--67628447 Score: 132
Period size: 39 Copynumber: 2.3 Consensus size: 39
67628346 GCTACTCGTT
*
67628356 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CATAGCCCGGAAT-TAGTAACTCGCA
* *
67628396 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
67628435 CAAATGCCTTCGG
1 CAAATGCCTTCGG
67628448 ATCTTAGTCC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
39 33 0.69
40 15 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
Found at i:67628427 original size:39 final size:40
Alignment explanation
Indices: 67628337--67628500 Score: 176
Period size: 40 Copynumber: 4.1 Consensus size: 40
67628327 CGGAATTTAA
** *
67628337 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
67628377 CCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
67628416 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
67628456 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
67628496 CCGGA
1 CCGGA
67628501 CATCATTCAA
Statistics
Matches: 105, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
38 3 0.03
39 32 0.30
40 58 0.55
41 12 0.11
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:67630787 original size:120 final size:119
Alignment explanation
Indices: 67630529--67630838 Score: 359
Period size: 120 Copynumber: 2.6 Consensus size: 119
67630519 TTGCAGCGTC
* * * * * *
67630529 TTTCAAAAACTGCCGCTAATGGTCGGCCTATAGTGGCGTTTTTTAAAAAGGTCGCTTATGCTTGA
1 TTTCAAAAAGTGCCGCTAATGGTCGACCTATAGTGGCGTTTTTCAAAAAGGCCGCTAATGCTCGA
* * * * * * *
67630594 TCTGTAGCGGCATTTTTCAAAAAGCATAGCTAATGGTCAACCTATAGCGGCGTT
66 TCTATAGCAGCATTTTTCAAAAAGCACAGCTAATGCTCAACCTATAGAGACATT
* * * * *
67630648 TTTTAAAAAGCGCCGCTAATGGTCTACCTATAGCGACGTTTTTCAAAAAGCGCCGCTAATGCTCG
1 TTTCAAAAAGTGCCGCTAATGGTCGACCTATAGTGGCGTTTTTCAAAAAG-GCCGCTAATGCTCG
* * * *
67630713 ATCTATAGCAGCATTTTTCAAAAAGCGCAGCTAATGCTCGATCTGTAGAGACATT
65 ATCTATAGCAGCATTTTTCAAAAAGCACAGCTAATGCTCAACCTATAGAGACATT
* * * * *
67630768 TTTCAGAAAGTGCCACTAATGCTCGATCTATAATGGCGTTTTTCAAAAAGTGCCGCTAATGCTCG
1 TTTCAAAAAGTGCCGCTAATGGTCGACCTATAGTGGCGTTTTTCAAAAAG-GCCGCTAATGCTCG
67630833 ATCTAT
65 ATCTAT
67630839 GCTAAAAATG
Statistics
Matches: 157, Mismatches: 33, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
119 42 0.27
120 115 0.73
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (119 bp):
TTTCAAAAAGTGCCGCTAATGGTCGACCTATAGTGGCGTTTTTCAAAAAGGCCGCTAATGCTCGA
TCTATAGCAGCATTTTTCAAAAAGCACAGCTAATGCTCAACCTATAGAGACATT
Found at i:67630829 original size:40 final size:40
Alignment explanation
Indices: 67630524--67630838 Score: 292
Period size: 40 Copynumber: 7.9 Consensus size: 40
67630514 ATTTTTTGCA
* * ** *
67630524 GCGTCTTTCAAAAA-CTGCCGCTAATGGTCGGCCTATAGTG
1 GCGTTTTTCAAAAAGC-GCCGCTAATGCTCGATCTATAGCG
* * * * *
67630564 GCGTTTTTTAAAAAG-GTCGCTTATGCTTGATCTGTAGCG
1 GCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCG
* *** * * *
67630603 GCATTTTTCAAAAAGCATAGCTAATGGTCAACCTATAGCG
1 GCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCG
* * * *
67630643 GCGTTTTTTAAAAAGCGCCGCTAATGGTCTACCTATAGCG
1 GCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCG
* *
67630683 ACGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCA
1 GCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCG
* * * *
67630723 GCATTTTTCAAAAAGCGCAGCTAATGCTCGATCTGTAGAG
1 GCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCG
* * * * * **
67630763 ACATTTTTCAGAAAGTGCCACTAATGCTCGATCTATAATG
1 GCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCG
*
67630803 GCGTTTTTCAAAAAGTGCCGCTAATGCTCGATCTAT
1 GCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTAT
67630839 GCTAAAAATG
Statistics
Matches: 223, Mismatches: 50, Indels: 4
0.81 0.18 0.01
Matches are distributed among these distances:
39 29 0.13
40 194 0.87
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (40 bp):
GCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCG
Found at i:67637303 original size:17 final size:17
Alignment explanation
Indices: 67637281--67637314 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
67637271 AATGTTTCTA
*
67637281 ATTCAAAATTAATATAT
1 ATTCAAAAGTAATATAT
67637298 ATTCAAAAGTAATATAT
1 ATTCAAAAGTAATATAT
67637315 TTCTTTCAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.38
Consensus pattern (17 bp):
ATTCAAAAGTAATATAT
Found at i:67637353 original size:9 final size:9
Alignment explanation
Indices: 67637339--67637650 Score: 107
Period size: 9 Copynumber: 35.8 Consensus size: 9
67637329 CCAGCAACTC
67637339 ACATAATTT
1 ACATAATTT
67637348 ACATAATTT
1 ACATAATTT
67637357 ACATAA--T
1 ACATAATTT
*
67637364 ACATAACTT
1 ACATAATTT
67637373 ACATAATTT
1 ACATAATTT
*
67637382 --A-AAGTT
1 ACATAATTT
67637388 -CA-AATTT
1 ACATAATTT
*
67637395 -CATAACTT
1 ACATAATTT
67637403 ACATAATTT
1 ACATAATTT
* *
67637412 ACTTAACTT
1 ACATAATTT
67637421 ACATAA--T
1 ACATAATTT
* *
67637428 ACATGACTT
1 ACATAATTT
67637437 ACATAATTT
1 ACATAATTT
*
67637446 AAAGATCAAATTT
1 --ACAT--AATTT
*
67637459 -CATAACTT
1 ACATAATTT
*
67637467 ACATGA--T
1 ACATAATTT
*
67637474 ACATAACTT
1 ACATAATTT
*
67637483 ATATAATTT
1 ACATAATTT
67637492 AAAGACCA-AATTT
1 ----A-CATAATTT
*
67637505 -CATAAGTT
1 ACATAATTT
67637513 ACATAATTT
1 ACATAATTT
67637522 ACATAATTT
1 ACATAATTT
67637531 ACATAATAATT
1 ACATAAT--TT
* *
67637542 -TA-AAGTT
1 ACATAATTT
67637549 -CA-AATTT
1 ACATAATTT
*
67637556 -CATAACTT
1 ACATAATTT
67637564 ACATAA--T
1 ACATAATTT
*
67637571 ACATAACTT
1 ACATAATTT
67637580 ACATAATTT
1 ACATAATTT
* *
67637589 AAAGATCAAAATT
1 --ACAT--AATTT
* *
67637602 -CATGACTT
1 ACATAATTT
67637610 ACATAATTT
1 ACATAATTT
*
67637619 ACATAACTT
1 ACATAATTT
67637628 ACATAA--T
1 ACATAATTT
*
67637635 ACATAACTT
1 ACATAATTT
67637644 ACATAAT
1 ACATAAT
67637651 ACATGACTTA
Statistics
Matches: 233, Mismatches: 36, Indels: 68
0.69 0.11 0.20
Matches are distributed among these distances:
6 4 0.02
7 52 0.22
8 19 0.08
9 129 0.55
10 5 0.02
11 8 0.03
13 15 0.06
14 1 0.00
ACGTcount: A:0.46, C:0.14, G:0.03, T:0.37
Consensus pattern (9 bp):
ACATAATTT
Found at i:67637368 original size:16 final size:16
Alignment explanation
Indices: 67637347--67637661 Score: 129
Period size: 16 Copynumber: 19.8 Consensus size: 16
67637337 TCACATAATT
*
67637347 TACATAATTTACATAA
1 TACATAACTTACATAA
67637363 TACATAACTTACATAA
1 TACATAACTTACATAA
** *
67637379 TTTA-AAGTT-CA-AA
1 TACATAACTTACATAA
*
67637392 TTTCATAACTTACATAA
1 -TACATAACTTACATAA
*
67637409 TTTACTTAACTTACATAA
1 --TACATAACTTACATAA
*
67637427 TACATGACTTACATAA
1 TACATAACTTACATAA
** **
67637443 TTTA-AAGAT-CA-AA
1 TACATAACTTACATAA
* *
67637456 TTTCATAACTTACATGA
1 -TACATAACTTACATAA
*
67637473 TACATAACTTATATAA
1 TACATAACTTACATAA
* **
67637489 T--TTAA-AGACCA-AA
1 TACATAACTTA-CATAA
* *
67637502 TTTCATAAGTTACATAA
1 -TACATAACTTACATAA
*
67637519 TTTACATAATTTACATAA
1 --TACATAACTTACATAA
*
67637537 TA-ATTTAAAGTT-CA-AA
1 TACA--T-AACTTACATAA
*
67637553 TTTCATAACTTACATAA
1 -TACATAACTTACATAA
67637570 TACATAACTTACATAA
1 TACATAACTTACATAA
** ** *
67637586 TTTA-AAGAT-CAAAA
1 TACATAACTTACATAA
* *
67637600 TTCATGACTTACATAA
1 TACATAACTTACATAA
67637616 TTTACATAACTTACATAA
1 --TACATAACTTACATAA
67637634 TACATAACTTACATAA
1 TACATAACTTACATAA
*
67637650 TACATGACTTAC
1 TACATAACTTAC
67637662 TTAACTTAAT
Statistics
Matches: 224, Mismatches: 48, Indels: 54
0.69 0.15 0.17
Matches are distributed among these distances:
13 7 0.03
14 22 0.10
15 23 0.10
16 111 0.50
17 12 0.05
18 49 0.22
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.37
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:67637382 original size:34 final size:34
Alignment explanation
Indices: 67637334--67637661 Score: 131
Period size: 30 Copynumber: 10.2 Consensus size: 34
67637324 GTTCACCAGC
* *
67637334 AACTCACATAATTTACATAATTTACATAATACAT
1 AACTTACATAATTTACATAACTTACATAATACAT
* *
67637368 AACTTACATAATTT--A-AAGTT-CA-AATTTCAT
1 AACTTACATAATTTACATAACTTACATAA-TACAT
*
67637398 AACTTACATAATTTACTTAACTTACATAATACAT
1 AACTTACATAATTTACATAACTTACATAATACAT
* *
67637432 GACTTACATAATTTA-A-AGA--T-CA-AATTTCAT
1 AACTTACATAATTTACATA-ACTTACATAA-TACAT
* * *
67637462 AACTTACATGA--TACATAACTTATATAAT--TT
1 AACTTACATAATTTACATAACTTACATAATACAT
** *
67637492 AA-AGACCA-AATTT-CATAAGTTACATAATTTACAT
1 AACTTA-CATAATTTACATAACTTACATAA--TACAT
* * * *
67637526 AATTTACATAATAATT-TA-AAGTT-CA-AATTTCAT
1 AACTTACATAAT--TTACATAACTTACATAA-TACAT
**
67637559 AACTTACATAA--TACATAACTTACATAATTTA-
1 AACTTACATAATTTACATAACTTACATAATACAT
** * *
67637590 AAGAT-CA-AAATT-CATGACTTACATAATTTACAT
1 AACTTACATAATTTACATAACTTACATAA--TACAT
67637623 AACTTACATAA--TACATAACTTACATAATACAT
1 AACTTACATAATTTACATAACTTACATAATACAT
*
67637655 GACTTAC
1 AACTTAC
67637662 TTAACTTAAT
Statistics
Matches: 221, Mismatches: 36, Indels: 76
0.66 0.11 0.23
Matches are distributed among these distances:
28 2 0.01
29 11 0.05
30 69 0.31
31 15 0.07
32 23 0.10
33 28 0.13
34 55 0.25
35 10 0.05
36 5 0.02
37 3 0.01
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.36
Consensus pattern (34 bp):
AACTTACATAATTTACATAACTTACATAATACAT
Found at i:67637423 original size:64 final size:64
Alignment explanation
Indices: 67637334--67637489 Score: 235
Period size: 64 Copynumber: 2.5 Consensus size: 64
67637324 GTTCACCAGC
* * *
67637334 AACTCACATAATTTACATAATTTACATAATACATAACTTACATAATTTAAAGTTCAAATTTCAT
1 AACTTACATAATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCAT
* *
67637398 AACTTACATAATTTACTTAACTTACATAATACATGACTTACATAATTTAAAGATCAAATTTCAT
1 AACTTACATAATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCAT
* *
67637462 AACTTACATGA--TACATAACTTATATAAT
1 AACTTACATAATTTACATAACTTACATAAT
67637490 TTAAAGACCA
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
62 15 0.18
64 69 0.82
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.37
Consensus pattern (64 bp):
AACTTACATAATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCAT
Found at i:67637476 original size:46 final size:46
Alignment explanation
Indices: 67637415--67637634 Score: 296
Period size: 46 Copynumber: 4.6 Consensus size: 46
67637405 ATAATTTACT
*
67637415 TAACTTACATAATACATGACTTACATAATTTAAAGATCAAATTTCA
1 TAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCA
* * *
67637461 TAACTTACATGATACATAACTTATATAATTTAAAGACCAAATTTCA
1 TAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCA
* * *
67637507 TAAGTTACATAATTTACATAATTTACATAATAATTTAAAGTTCAAATTTCA
1 TAACTTACATAA--TACATAACTTAC---ATAATTTAAAGATCAAATTTCA
*
67637558 TAACTTACATAATACATAACTTACATAATTTAAAGATCAAAATTCA
1 TAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCA
*
67637604 TGACTTACATAATTTACATAACTTACATAAT
1 TAACTTACATAA--TACATAACTTACATAAT
67637635 ACATAACTTA
Statistics
Matches: 152, Mismatches: 15, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
46 83 0.55
48 27 0.18
49 11 0.07
51 31 0.20
ACGTcount: A:0.46, C:0.14, G:0.04, T:0.36
Consensus pattern (46 bp):
TAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCA
Found at i:67637557 original size:97 final size:97
Alignment explanation
Indices: 67637415--67637635 Score: 326
Period size: 97 Copynumber: 2.3 Consensus size: 97
67637405 ATAATTTACT
* *
67637415 TAACTTACATAA--TACATGACTTAC---ATAATTTAAAGATCAAATTTCATAACTTACATGATA
1 TAACTTACATAATTTACATAACTTACATAATAATTTAAAGATCAAATTTCATAACTTACATAATA
* *
67637475 CATAACTTATATAATTTAAAGACCAAATTTCA
66 CATAACTTACATAATTTAAAGACCAAAATTCA
* * *
67637507 TAAGTTACATAATTTACATAATTTACATAATAATTTAAAGTTCAAATTTCATAACTTACATAATA
1 TAACTTACATAATTTACATAACTTACATAATAATTTAAAGATCAAATTTCATAACTTACATAATA
*
67637572 CATAACTTACATAATTTAAAGATCAAAATTCA
66 CATAACTTACATAATTTAAAGACCAAAATTCA
*
67637604 TGACTTACATAATTTACATAACTTACATAATA
1 TAACTTACATAATTTACATAACTTACATAATA
67637636 CATAACTTAC
Statistics
Matches: 113, Mismatches: 11, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
92 11 0.10
94 10 0.09
97 92 0.81
ACGTcount: A:0.46, C:0.14, G:0.04, T:0.36
Consensus pattern (97 bp):
TAACTTACATAATTTACATAACTTACATAATAATTTAAAGATCAAATTTCATAACTTACATAATA
CATAACTTACATAATTTAAAGACCAAAATTCA
Found at i:67637666 original size:25 final size:26
Alignment explanation
Indices: 67637556--67637669 Score: 83
Period size: 25 Copynumber: 4.3 Consensus size: 26
67637546 GTTCAAATTT
*
67637556 CATAACTTACATAA-TACATAACTTA
1 CATAACTTACATAACTACATGACTTA
* * * *
67637581 CATAATTTAAAGATCAAAATTCATGACTTA
1 CATAACTT--ACAT--AACTACATGACTTA
* *
67637611 CATAATTTACATAACTTACAT-A-ATA
1 CATAACTTACATAAC-TACATGACTTA
67637636 CATAACTTACATAA-TACATGACTTA
1 CATAACTTACATAACTACATGACTTA
*
67637661 CTTAACTTA
1 CATAACTTA
67637670 ATTATACTTA
Statistics
Matches: 70, Mismatches: 11, Indels: 16
0.72 0.11 0.16
Matches are distributed among these distances:
23 5 0.07
24 1 0.01
25 32 0.46
26 3 0.04
27 7 0.10
28 3 0.04
29 2 0.03
30 17 0.24
ACGTcount: A:0.46, C:0.18, G:0.03, T:0.34
Consensus pattern (26 bp):
CATAACTTACATAACTACATGACTTA
Found at i:67639401 original size:12 final size:12
Alignment explanation
Indices: 67639384--67639409 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
67639374 AAGATCGAGG
67639384 GATGAATCTGAT
1 GATGAATCTGAT
67639396 GATGAATCTGAT
1 GATGAATCTGAT
67639408 GA
1 GA
67639410 AGAGGATGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (12 bp):
GATGAATCTGAT
Found at i:67643177 original size:21 final size:21
Alignment explanation
Indices: 67643153--67643214 Score: 97
Period size: 21 Copynumber: 3.0 Consensus size: 21
67643143 GGCAACCAAG
67643153 AGGGAGGCAGCGGCAGCAGCA
1 AGGGAGGCAGCGGCAGCAGCA
* *
67643174 AGGGAGGCAGCAGCAGCAGCG
1 AGGGAGGCAGCGGCAGCAGCA
*
67643195 AGGGAGGCAGAGGCAGCAGC
1 AGGGAGGCAGCGGCAGCAGC
67643215 GATGGCAGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.29, C:0.23, G:0.48, T:0.00
Consensus pattern (21 bp):
AGGGAGGCAGCGGCAGCAGCA
Found at i:67643204 original size:18 final size:19
Alignment explanation
Indices: 67643164--67643204 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
67643154 GGGAGGCAGC
*
67643164 GGCAGCAGCAAGGGAGGCA
1 GGCAGCAGCAAGCGAGGCA
*
67643183 -GCAGCAGC-AGCGAGGGA
1 GGCAGCAGCAAGCGAGGCA
67643200 GGCAG
1 GGCAG
67643205 AGGCAGCAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.29, C:0.22, G:0.49, T:0.00
Consensus pattern (19 bp):
GGCAGCAGCAAGCGAGGCA
Found at i:67643631 original size:43 final size:43
Alignment explanation
Indices: 67643584--67643716 Score: 178
Period size: 43 Copynumber: 3.1 Consensus size: 43
67643574 TCTGTCAAAA
* * * *
67643584 TTAGCGGCG-TTTGCCAAAAAAATGCTGCTAAAAGCCATGACTT
1 TTAGCGGCGCTTT-CCCAAAAAACGCCGCTAAAAGCCACGACTT
* *
67643627 TTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAAGCCACGACCT
1 TTAGCGGCGCTTTCCCAAAAAACGCCGCTAAAAGCCACGACTT
* *
67643670 TTAACGGCGCTTTCCCAACAAACGCCGCTAAAAGCCACGACTT
1 TTAGCGGCGCTTTCCCAAAAAACGCCGCTAAAAGCCACGACTT
67643713 TTAG
1 TTAG
67643717 TGGCATTTTT
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
43 75 0.96
44 3 0.04
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (43 bp):
TTAGCGGCGCTTTCCCAAAAAACGCCGCTAAAAGCCACGACTT
Found at i:67645492 original size:28 final size:28
Alignment explanation
Indices: 67645460--67645524 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
67645450 ATTTACTAGA
*
67645460 ATACCCCTATGTATGCAAAATTACCGTT
1 ATACCCCTATGTATGCAAAATGACCGTT
*
67645488 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCGTT
67645516 ATACCCCTA
1 ATACCCCTA
67645525 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.32, C:0.28, G:0.09, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCGTT
Found at i:67645671 original size:28 final size:27
Alignment explanation
Indices: 67645630--67645719 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
67645620 AGGAAGCGTC
67645630 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* ** *
67645658 CTGGTGGCCCTGCCACGTATATCTATT
1 CTGGTGGCACTGCCACAAATATCTGTT
67645685 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
67645714 CTGGTG
1 CTGGTG
67645720 ACTCTGTCAC
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 22 0.43
28 22 0.43
29 7 0.14
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:67645730 original size:29 final size:28
Alignment explanation
Indices: 67645640--67645730 Score: 76
Period size: 27 Copynumber: 3.2 Consensus size: 28
67645630 CTGGTGGCTA
* * * *
67645640 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTATTCTGGTGACAC
** *
67645668 TGCCAC-GTATATCTATTCTGGTGGCAC
1 TGCCACAAAATATCTATTCTGGTGACAC
* *
67645695 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTAT-TCTGGTGACAC
*
67645724 TGTCACA
1 TGCCACA
67645731 TTTTTTGTAT
Statistics
Matches: 50, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
27 22 0.44
28 13 0.26
29 15 0.30
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTATTCTGGTGACAC
Found at i:67646825 original size:11 final size:10
Alignment explanation
Indices: 67646797--67646830 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
67646787 AGCCTGTAAC
67646797 TATTCTGAAT
1 TATTCTGAAT
*
67646807 TTTTCTGAAT
1 TATTCTGAAT
67646817 ATATTCTGAAT
1 -TATTCTGAAT
67646828 TAT
1 TAT
67646831 CTGTCTGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:67653373 original size:28 final size:28
Alignment explanation
Indices: 67653341--67653405 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
67653331 ATTTACTAGA
*
67653341 ATACCCCTATGTATGCAAAATTACCGTT
1 ATACCCCTATGTATGCAAAATGACCGTT
*
67653369 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCGTT
67653397 ATACCCCTA
1 ATACCCCTA
67653406 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.32, C:0.28, G:0.09, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCGTT
Found at i:67653543 original size:28 final size:26
Alignment explanation
Indices: 67653511--67653600 Score: 90
Period size: 28 Copynumber: 3.2 Consensus size: 26
67653501 AGGAAGCGTC
67653511 CTGGTGGCTATGCCACAAATTATCTGTT
1 CTGGTGGC-ATGCCACAAA-TATCTGTT
* **
67653539 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGG-CATGCCACAAATATCTGTT
*
67653566 CTGGTGGCACTGCTACAAAATATCTGTAT
1 CTGGTGGCA-TGCCAC-AAATATCTGT-T
67653595 CTGGTG
1 CTGGTG
67653601 ACTCTGTCAC
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 20 0.39
28 22 0.43
29 8 0.16
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.33
Consensus pattern (26 bp):
CTGGTGGCATGCCACAAATATCTGTT
Found at i:67653619 original size:55 final size:56
Alignment explanation
Indices: 67653511--67653625 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
67653501 AGGAAGCGTC
* * *
67653511 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * * *
67653566 CTGGTGGC-ACTGCTACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
67653622 CTGG
1 CTGG
67653626 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.58
56 20 0.40
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:67656931 original size:43 final size:43
Alignment explanation
Indices: 67656880--67657036 Score: 149
Period size: 43 Copynumber: 3.7 Consensus size: 43
67656870 TATCCCAGAT
* * *
67656880 ATGGTCTTACATGTTATCACATATCGATGCCATTGTTCCACAC
1 ATGGTCTTACATGTAATCACATATCGATGCCATTGTCCCAAAC
* * * * *
67656923 AGGGTCTTACACGAAATCGA-TTAAT-GATGCCAATGTCCCAAAC
1 ATGGTCTTACATGTAATC-ACAT-ATCGATGCCATTGTCCCAAAC
* * * *
67656966 ATGGTCTTACATGTAATCTCA-ATACAATGCCATTGTCCCAGAT
1 ATGGTCTTACATGTAATCACATAT-CGATGCCATTGTCCCAAAC
*
67657009 ATGGTCTTACATGTAATCACATCTCGAT
1 ATGGTCTTACATGTAATCACATATCGAT
67657037 AACCTAATAT
Statistics
Matches: 88, Mismatches: 20, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
41 2 0.02
43 82 0.93
44 4 0.05
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCACATATCGATGCCATTGTCCCAAAC
Found at i:67662322 original size:16 final size:17
Alignment explanation
Indices: 67662289--67662322 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
67662279 TGACCTGTAC
67662289 AAGTTTGAAAAATGTTT
1 AAGTTTGAAAAATGTTT
*
67662306 AAGTTTTAAAAAT-TTT
1 AAGTTTGAAAAATGTTT
67662322 A
1 A
67662323 TATGAGCTCG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (17 bp):
AAGTTTGAAAAATGTTT
Found at i:67664551 original size:25 final size:24
Alignment explanation
Indices: 67664505--67664601 Score: 90
Period size: 25 Copynumber: 3.9 Consensus size: 24
67664495 GGAGGAGGTG
*
67664505 CAAAAGAGCTTTTGCCCCAGTTTACT
1 CAAAAGGGC-TTTGCCCCAGTTTA-T
* *
67664531 GAAAAGGGCTTTGCCCTAGTTTAT
1 CAAAAGGGCTTTGCCCCAGTTTAT
67664555 CAGAAAGGGCTTTGCCCCAG-TTAT
1 CA-AAAGGGCTTTGCCCCAGTTTAT
*
67664579 TAAAAGAGG-TTATGCCTCCAGTT
1 CAAAAG-GGCTT-TGCC-CCAGTT
67664602 ATATGATAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
23 6 0.10
24 13 0.22
25 33 0.55
26 8 0.13
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
CAAAAGGGCTTTGCCCCAGTTTAT
Found at i:67664831 original size:30 final size:31
Alignment explanation
Indices: 67664797--67664879 Score: 134
Period size: 30 Copynumber: 2.7 Consensus size: 31
67664787 CATTTACAGT
67664797 AAAGGCTTCGGCCCAGTGATATG-ATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
67664827 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
67664858 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
67664880 TTGAGATTGA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
30 26 0.53
31 23 0.47
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:67664862 original size:31 final size:30
Alignment explanation
Indices: 67664797--67664874 Score: 129
Period size: 31 Copynumber: 2.6 Consensus size: 30
67664787 CATTTACAGT
*
67664797 AAAGGCTTCGGCCCAGTGATATGATAATGA
1 AAAGGCTTCGGCCCAGTGACATGATAATGA
*
67664827 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGACATG-ATAATGA
67664858 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
67664875 ATATGTTGAG
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 22 0.49
31 23 0.51
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.21
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTGACATGATAATGA
Found at i:67672472 original size:24 final size:25
Alignment explanation
Indices: 67672395--67672465 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
67672385 GAGGAAGTGC
* * * *
67672395 AAAAGGGCTTTTGTCCCAATTTACCG
1 AAAAGGGC-TTTGCCCCAGTTTATCA
67672421 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
67672446 AAAAGGGCTTTTCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
67672466 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
25 32 0.80
26 8 0.20
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.30
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:67672478 original size:24 final size:25
Alignment explanation
Indices: 67672394--67672478 Score: 70
Period size: 25 Copynumber: 3.4 Consensus size: 25
67672384 GGAGGAAGTG
* * *
67672394 CAAAAG-GGCTTTTGTCCCAATTTAC
1 CAAAAGAGGC-TTTGCCCCAGTTTAT
67672419 CGAAAAG-GGCTTTGCCCCAGTTTAT
1 C-AAAAGAGGCTTTGCCCCAGTTTAT
*
67672444 CAAAA-AGGGCTTTTCCCCAG-TTAT
1 CAAAAGA-GGCTTTGCCCCAGTTTAT
*
67672468 TAAAAGAGGCT
1 CAAAAGAGGCT
67672479 AGGCCTCCAG
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
24 16 0.31
25 27 0.53
26 8 0.16
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.28
Consensus pattern (25 bp):
CAAAAGAGGCTTTGCCCCAGTTTAT
Found at i:67685152 original size:63 final size:63
Alignment explanation
Indices: 67685053--67685178 Score: 216
Period size: 63 Copynumber: 2.0 Consensus size: 63
67685043 GATAATGGAG
*
67685053 TGACCGATTGAAGTTATAACTAATAACCGAATTATGGATTAGTTAATAGGGTGGAATAAATTT
1 TGACCGATTGAAGTTATAACTAATAACCAAATTATGGATTAGTTAATAGGGTGGAATAAATTT
* **
67685116 TGACCGATTGAGGTTATATTTAATAACCAAATTATGGATTAGTTAATAGGGTGGAATAAATTT
1 TGACCGATTGAAGTTATAACTAATAACCAAATTATGGATTAGTTAATAGGGTGGAATAAATTT
67685179 GCATTTCATA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.37, C:0.07, G:0.21, T:0.35
Consensus pattern (63 bp):
TGACCGATTGAAGTTATAACTAATAACCAAATTATGGATTAGTTAATAGGGTGGAATAAATTT
Found at i:67694276 original size:33 final size:32
Alignment explanation
Indices: 67694234--67694373 Score: 101
Period size: 33 Copynumber: 4.3 Consensus size: 32
67694224 CATACTGTTA
67694234 TCTGAAAAGGGGCTAAGGCCCAGTTTATCATAT
1 TCTGAAAAGGGGCTAAGGCCCAGTTTATC-TAT
* **
67694267 TCTGGAAA-GGGCTTCGGCCCAGTACTGT-TCTAT
1 TCTGAAAAGGGGCTAAGGCCCAGT--T-TATCTAT
* * * * * * *
67694300 TCTGGAATGGGCCCATGGGCCA-TATAGT-TA-
1 TCTGAAAAGGGGCTAAGGCCCAGTTTA-TCTAT
67694330 TCTGAAAAGGGGCTAAGGCCCAGTTTATCGTAT
1 TCTGAAAAGGGGCTAAGGCCCAGTTTATC-TAT
67694363 TCTGAAAAGGG
1 TCTGAAAAGGG
67694374 CTTCTGCCCA
Statistics
Matches: 80, Mismatches: 17, Indels: 20
0.68 0.15 0.17
Matches are distributed among these distances:
30 18 0.22
31 5 0.06
32 16 0.20
33 29 0.36
34 11 0.14
35 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (32 bp):
TCTGAAAAGGGGCTAAGGCCCAGTTTATCTAT
Found at i:67694322 original size:96 final size:96
Alignment explanation
Indices: 67694195--67694388 Score: 327
Period size: 96 Copynumber: 2.0 Consensus size: 96
67694185 ACGAATATGT
* *
67694195 CTGTTCTGTTCTGGAATGGGCCTATGGGCCATACT-GTTATCTGAAAAGGGGCTAAGGCCCAGTT
1 CTGTTCTATTCTGGAATGGGCCCATGGGCCATA-TAGTTATCTGAAAAGGGGCTAAGGCCCAGTT
*
67694259 TATCATATTCTGGAAAGGGCTTCGGCCCAGTA
65 TATCATATTCTGAAAAGGGCTTCGGCCCAGTA
67694291 CTGTTCTATTCTGGAATGGGCCCATGGGCCATATAGTTATCTGAAAAGGGGCTAAGGCCCAGTTT
1 CTGTTCTATTCTGGAATGGGCCCATGGGCCATATAGTTATCTGAAAAGGGGCTAAGGCCCAGTTT
* *
67694356 ATCGTATTCTGAAAAGGGCTTCTGCCCAGTA
66 ATCATATTCTGAAAAGGGCTTCGGCCCAGTA
67694387 CT
1 CT
67694389 CGCAGATATC
Statistics
Matches: 92, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
95 1 0.01
96 91 0.99
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (96 bp):
CTGTTCTATTCTGGAATGGGCCCATGGGCCATATAGTTATCTGAAAAGGGGCTAAGGCCCAGTTT
ATCATATTCTGAAAAGGGCTTCGGCCCAGTA
Found at i:67694770 original size:77 final size:77
Alignment explanation
Indices: 67694676--67694838 Score: 263
Period size: 77 Copynumber: 2.1 Consensus size: 77
67694666 ATTTTTATTT
* *
67694676 TGGGTTTTTAAATTACTTAAATCATTTCCAACTTGAGATTCACATCACTTAAATTGATTCCTTGA
1 TGGG-TTTAAAATTACTTAAATCATTTCCAACTTAAGATTCACATCACTTAAATTGATTCCTTGA
67694741 AATTGGTTAACTC
65 AATTGGTTAACTC
* ***
67694754 TGGGTTTAAAATTACTTAAATCGTTTTTGACTTAAGATTCACATCACTTAAATTGATTCCTTGAA
1 TGGGTTTAAAATTACTTAAATCATTTCCAACTTAAGATTCACATCACTTAAATTGATTCCTTGAA
67694819 ATTGGTTAACTC
66 ATTGGTTAACTC
67694831 TGGGTTTA
1 TGGGTTTA
67694839 TCAAAAATTA
Statistics
Matches: 79, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
77 75 0.95
78 4 0.05
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.42
Consensus pattern (77 bp):
TGGGTTTAAAATTACTTAAATCATTTCCAACTTAAGATTCACATCACTTAAATTGATTCCTTGAA
ATTGGTTAACTC
Found at i:67711023 original size:27 final size:27
Alignment explanation
Indices: 67710965--67711023 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
67710955 GAAGTGTACT
*
67710965 ATACTGGTGGCTTTGCCACATATACTG
1 ATACTGGTGGCTTTGCCACATATACAG
*
67710992 TTACTGGTGGCTTTGCCACATATACAG
1 ATACTGGTGGCTTTGCCACATATACAG
67711019 ATACT
1 ATACT
67711024 AGCAGCTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
ATACTGGTGGCTTTGCCACATATACAG
Found at i:67711031 original size:27 final size:27
Alignment explanation
Indices: 67710974--67711032 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
67710964 TATACTGGTG
* * * **
67710974 GCTTTGCCACATATACTGTTACTGGTG
1 GCTTTGCCACATATACAGATACTAGCA
67711001 GCTTTGCCACATATACAGATACTAGCA
1 GCTTTGCCACATATACAGATACTAGCA
67711028 GCTTT
1 GCTTT
67711033 ATTGCGTTAC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.34
Consensus pattern (27 bp):
GCTTTGCCACATATACAGATACTAGCA
Found at i:67711859 original size:14 final size:14
Alignment explanation
Indices: 67711840--67711868 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
67711830 CCAGAAGCAA
67711840 ATAAAATAAAAATT
1 ATAAAATAAAAATT
67711854 ATAAAATAAAAATT
1 ATAAAATAAAAATT
67711868 A
1 A
67711869 AATTAAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
ATAAAATAAAAATT
Found at i:67711903 original size:6 final size:6
Alignment explanation
Indices: 67711838--67711888 Score: 50
Period size: 6 Copynumber: 8.3 Consensus size: 6
67711828 TTCCAGAAGC
* * *
67711838 AAAT-A AAATAA AAATTATA AAATAA AAATTA AATTAA AAACAA AAATAA
1 AAATAA AAATAA AAA-TA-A AAATAA AAATAA AAATAA AAATAA AAATAA
67711887 AA
1 AA
67711889 TGCAATAAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
5 4 0.11
6 25 0.68
7 4 0.11
8 4 0.11
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (6 bp):
AAATAA
Found at i:67715095 original size:26 final size:26
Alignment explanation
Indices: 67715056--67715109 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
67715046 CATATTGTCC
67715056 CCTATTCTCCCCCTTCGTGACTCTTT
1 CCTATTCTCCCCCTTCGTGACTCTTT
* *
67715082 CCTATTCTCTCCCTTCGTTACTCTTT
1 CCTATTCTCCCCCTTCGTGACTCTTT
67715108 CC
1 CC
67715110 CGCTCTCCGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.07, C:0.43, G:0.06, T:0.44
Consensus pattern (26 bp):
CCTATTCTCCCCCTTCGTGACTCTTT
Found at i:67715116 original size:26 final size:26
Alignment explanation
Indices: 67715061--67715122 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
67715051 TGTCCCCTAT
* *
67715061 TCTCCCCCTTCGTGACTCTTTCCTAT
1 TCTCCCCCTTCGTGACTCTTTCCCAC
* * *
67715087 TCTCTCCCTTCGTTACTCTTTCCCGC
1 TCTCCCCCTTCGTGACTCTTTCCCAC
*
67715113 TCTCCGCCTT
1 TCTCCCCCTT
67715123 ATTTCTTCTT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.05, C:0.45, G:0.08, T:0.42
Consensus pattern (26 bp):
TCTCCCCCTTCGTGACTCTTTCCCAC
Found at i:67725118 original size:42 final size:42
Alignment explanation
Indices: 67725009--67725159 Score: 144
Period size: 43 Copynumber: 3.5 Consensus size: 42
67724999 ATGCCATATC
* * * * *
67725009 CCAGATATGGTCTTACATGTTATC-TCATATCGATGCCAATGC
1 CCAGACATGGTCTTACATGTAATCAT-ATAACGATGTCAATGT
* * *
67725051 CCTAGACATGGTCTTATACGAAATCATATAACGATGTCAATGT
1 CC-AGACATGGTCTTACATGTAATCATATAACGATGTCAATGT
* * *
67725094 CCAGATATGGTCTTACATGTAATCACA-ATACAATGTCAATGTT
1 CCAGACATGGTCTTACATGTAATCATATA-ACGATGTCAATG-T
*
67725137 CTAGACATGGTCTTACATGTAAT
1 CCAGACATGGTCTTACATGTAAT
67725160 TTCATCTCGG
Statistics
Matches: 89, Mismatches: 16, Indels: 7
0.79 0.14 0.06
Matches are distributed among these distances:
41 1 0.01
42 33 0.37
43 54 0.61
44 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (42 bp):
CCAGACATGGTCTTACATGTAATCATATAACGATGTCAATGT
Found at i:67726409 original size:43 final size:43
Alignment explanation
Indices: 67726361--67726526 Score: 201
Period size: 43 Copynumber: 3.9 Consensus size: 43
67726351 GTTATCGAGA
* *
67726361 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATTATAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCATAT
* *
67726404 TGTGATTACGTGTAAGATCATGTCTGGGACATTGGCATCATAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCATAT
* * * * *
67726447 TATGATTTCATGTAAGACCTTGTTTGGGACAGTGGCATCA-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCATAT
* * *
67726489 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT
67726527 TGTGCGAGCT
Statistics
Matches: 106, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
42 8 0.08
43 98 0.92
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.34
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCATAT
Found at i:67729695 original size:16 final size:16
Alignment explanation
Indices: 67729674--67729705 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
67729664 ATATAATTCT
67729674 GGGTGTGGATTGGCTA
1 GGGTGTGGATTGGCTA
67729690 GGGTGTGGATTGGCTA
1 GGGTGTGGATTGGCTA
67729706 ACATTGCATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.06, G:0.50, T:0.31
Consensus pattern (16 bp):
GGGTGTGGATTGGCTA
Found at i:67730941 original size:43 final size:43
Alignment explanation
Indices: 67730876--67730962 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 43
67730866 GCTCCAGTGT
**
67730876 TAGTACAGCCAGAATCAAGTAAAGAGTTTGTAGTGTTTTGTGA
1 TAGTACAGCCAGAATCAAGTAAAGAGTTTGTAGCATTTTGTGA
* ***
67730919 TAGTACAGCCATAATTGGGTAAAGAGTTTGTAGCATTTTGTGA
1 TAGTACAGCCAGAATCAAGTAAAGAGTTTGTAGCATTTTGTGA
67730962 T
1 T
67730963 GCATCGTTGA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.31, C:0.09, G:0.25, T:0.34
Consensus pattern (43 bp):
TAGTACAGCCAGAATCAAGTAAAGAGTTTGTAGCATTTTGTGA
Found at i:67732667 original size:27 final size:27
Alignment explanation
Indices: 67732290--67732683 Score: 341
Period size: 27 Copynumber: 14.6 Consensus size: 27
67732280 TTACTTTACA
* **
67732290 GGGGTATTAT-AGTCATTTTACCTTACA
1 GGGGTATT-TCAGTCATTTTACCCTATG
* **
67732317 AGGGTATTAT-AGTCATTTTACCCTACA
1 GGGGTATT-TCAGTCATTTTACCCTATG
* * **
67732344 GAGGTATTAT-AGTCATTTTTCCCTACA
1 GGGGTATT-TCAGTCATTTTACCCTATG
* * **
67732371 GGGGTATTACAGTTATTTTACCCTACA
1 GGGGTATTTCAGTCATTTTACCCTATG
* * **
67732398 GGGGTATTACAGTCATTTTACCGTACA
1 GGGGTATTTCAGTCATTTTACCCTATG
* * *
67732425 GGGGTATTACAGTCATTTTATCCTATC
1 GGGGTATTTCAGTCATTTTACCCTATG
*
67732452 GGGGTATTTCGGTCATTTTACCCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
**
67732479 GGGGTATTTTGGTCATTTT-CCCTTATG
1 GGGGTATTTCAGTCATTTTACCC-TATG
* *
67732506 GGGGTATTTCGGTCATTTTACCCTATA
1 GGGGTATTTCAGTCATTTTACCCTATG
** *
67732533 GGGGTATTTTGGTCATTTTATCCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
* *
67732560 GGGCTGTTTC-GATCATTTTACCCCT-TG
1 GGGGTATTTCAG-TCATTTTA-CCCTATG
* * *
67732587 GGGGTATTTCGGTCATTTTACCTTATA
1 GGGGTATTTCAGTCATTTTACCCTATG
* *
67732614 GAGGTATTTCAATCATTTTACCCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
* *
67732641 GGGGTATTTCTGTCATTTTACCTTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
*
67732668 GGGGTATTTCGGTCAT
1 GGGGTATTTCAGTCAT
67732684 ACATGGCCGA
Statistics
Matches: 317, Mismatches: 43, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
26 7 0.02
27 303 0.96
28 7 0.02
ACGTcount: A:0.20, C:0.17, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGGTATTTCAGTCATTTTACCCTATG
Found at i:67733815 original size:12 final size:12
Alignment explanation
Indices: 67733794--67733824 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
67733784 TCTTGATTTC
*
67733794 CTCCTAATATCT
1 CTCCTCATATCT
67733806 CTCCTCATATCT
1 CTCCTCATATCT
67733818 CTCCTCA
1 CTCCTCA
67733825 ACTCCTCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.19, C:0.42, G:0.00, T:0.39
Consensus pattern (12 bp):
CTCCTCATATCT
Found at i:67737065 original size:43 final size:43
Alignment explanation
Indices: 67737017--67737185 Score: 164
Period size: 43 Copynumber: 4.0 Consensus size: 43
67737007 GTTATCAAGA
*
67737017 TGTGATTACATGTAAGACCATGTCTGAGACATTCGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGAGACATTGGCATTGTAT
* * *
67737060 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
1 TGTGATTACATGTAAGACCATGTCTGAGACATTGGCATTGTAT
* * * * * **
67737103 TATGATTTCATATAAGACCCTGTCT-AGGACAGTGGCA-TCAAT
1 TGTGATTACATGTAAGACCATGTCTGA-GACATTGGCATTGTAT
* * * *
67737145 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCATTGT
1 -TGTGATTACATGTAAGACCATGTCTGAGACATTGGCATTGT
67737186 GAGAGCTTAT
Statistics
Matches: 98, Mismatches: 24, Indels: 8
0.75 0.18 0.06
Matches are distributed among these distances:
42 7 0.07
43 91 0.93
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGAGACATTGGCATTGTAT
Found at i:67747482 original size:43 final size:43
Alignment explanation
Indices: 67747435--67747585 Score: 180
Period size: 43 Copynumber: 3.5 Consensus size: 43
67747425 TATCCCAGAT
* *
67747435 ATGGTCTTACAAGTTATCTCATATCGATGCCAATGTCCCAAAC
1 ATGGTCTTACACGTAATCTCATATCGATGCCAATGTCCCAAAC
* * *
67747478 ATGGTCTTACACGAAATCAT-ATAACGATGTCAATGTCCCAAAC
1 ATGGTCTTACACGTAATC-TCATATCGATGCCAATGTCCCAAAC
* * * *
67747521 ATAGTCTTACACGTAATCACA-ATACAATGCCAATGTCCCACAC
1 ATGGTCTTACACGTAATCTCATAT-CGATGCCAATGTCCCAAAC
*
67747564 ATGGTCTTACATGTAATCTCAT
1 ATGGTCTTACACGTAATCTCAT
67747586 CTTGGAAATC
Statistics
Matches: 89, Mismatches: 15, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
42 1 0.01
43 87 0.98
44 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCTCATATCGATGCCAATGTCCCAAAC
Found at i:67747774 original size:35 final size:35
Alignment explanation
Indices: 67747708--67747774 Score: 80
Period size: 35 Copynumber: 1.9 Consensus size: 35
67747698 TTCATAGCAG
* **
67747708 TTCAATGACAAATAAACATATATAATTCAATTCAA
1 TTCAATAACAAATAAACATATATAACACAATTCAA
* * *
67747743 TTCAATAATAAATAAGCATTTATAACACAATT
1 TTCAATAACAAATAAACATATATAACACAATT
67747775 TAAATACATT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
35 26 1.00
ACGTcount: A:0.51, C:0.13, G:0.03, T:0.33
Consensus pattern (35 bp):
TTCAATAACAAATAAACATATATAACACAATTCAA
Found at i:67753911 original size:29 final size:31
Alignment explanation
Indices: 67753860--67753917 Score: 77
Period size: 29 Copynumber: 1.9 Consensus size: 31
67753850 ACAAGTGATG
*
67753860 ATATGTGGCAAATGTATGAGAAA-ATGTGCA
1 ATATGTGGCAAATGAATGAGAAATATGTGCA
67753890 ATATGT-GCAAATGAAT-AGGAAATATGTG
1 ATATGTGGCAAATGAATGA-GAAATATGTG
67753918 ATATATATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 1 0.04
29 13 0.52
30 11 0.44
ACGTcount: A:0.41, C:0.05, G:0.26, T:0.28
Consensus pattern (31 bp):
ATATGTGGCAAATGAATGAGAAATATGTGCA
Found at i:67763763 original size:20 final size:20
Alignment explanation
Indices: 67763738--67763777 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
67763728 CTTATGCTAT
67763738 GTAAATGAAAT-GGAAAGTAA
1 GTAAATGAAATAGG-AAGTAA
*
67763758 GTAAATGGAATAGGAAGTAA
1 GTAAATGAAATAGGAAGTAA
67763778 ATAGAGTGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.53, C:0.00, G:0.28, T:0.20
Consensus pattern (20 bp):
GTAAATGAAATAGGAAGTAA
Found at i:67763765 original size:15 final size:16
Alignment explanation
Indices: 67763745--67763779 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
67763735 TATGTAAATG
*
67763745 AAATGGAA-AGTAAGT
1 AAATGGAATAGGAAGT
67763760 AAATGGAATAGGAAGT
1 AAATGGAATAGGAAGT
67763776 AAAT
1 AAAT
67763780 AGAGTGGTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.54, C:0.00, G:0.26, T:0.20
Consensus pattern (16 bp):
AAATGGAATAGGAAGT
Found at i:67783602 original size:28 final size:28
Alignment explanation
Indices: 67783570--67783652 Score: 98
Period size: 28 Copynumber: 3.0 Consensus size: 28
67783560 ATGTCGTTGA
67783570 ATACTCAATATCTCGCACACTAAGTGCC
1 ATACTCAATATCTCGCACACTAAGTGCC
* * *
67783598 ATACTCGATATCTCACACACTAAGTGCT
1 ATACTCAATATCTCGCACACTAAGTGCC
*
67783626 ATAC-CTAATAAT-TTGCACACTAAGTGC
1 ATACTC-AAT-ATCTCGCACACTAAGTGC
67783653 TGTACATAGA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
27 1 0.02
28 44 0.94
29 2 0.04
ACGTcount: A:0.34, C:0.28, G:0.11, T:0.28
Consensus pattern (28 bp):
ATACTCAATATCTCGCACACTAAGTGCC
Found at i:67783757 original size:40 final size:40
Alignment explanation
Indices: 67783640--67783773 Score: 142
Period size: 40 Copynumber: 3.4 Consensus size: 40
67783630 CTAATAATTT
* * * **
67783640 GCACACTAAGTGCTGTACATAGATGAAGCTATCTCAAATC
1 GCACACTAAGTGCCGTATATAGATGAAGCTATATCGTATC
* * **
67783680 GCACACTAGGTGTCGTATATAGCCGAAGCTATATCGTATC
1 GCACACTAAGTGCCGTATATAGATGAAGCTATATCGTATC
* * * *
67783720 GCACACTAAGTGCCCTATATAGTTGAAGCTATGTCGTATT
1 GCACACTAAGTGCCGTATATAGATGAAGCTATATCGTATC
*
67783760 GCATACTAAGTGCC
1 GCACACTAAGTGCC
67783774 ACAAATAACC
Statistics
Matches: 77, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 77 1.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (40 bp):
GCACACTAAGTGCCGTATATAGATGAAGCTATATCGTATC
Found at i:67792400 original size:34 final size:34
Alignment explanation
Indices: 67792357--67792432 Score: 116
Period size: 34 Copynumber: 2.2 Consensus size: 34
67792347 TTGCATAATG
* *
67792357 TACTGAAATGGGCTAAGGCCCAGGCTGCCACTGT
1 TACTGAAATGGGCTAAGGCCCAGACTGCCACTGC
* *
67792391 TACTGAAATGGGCTCAGGCCCAGACTGCTACTGC
1 TACTGAAATGGGCTAAGGCCCAGACTGCCACTGC
67792425 TACTGAAA
1 TACTGAAA
67792433 GAGGGGCTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.21
Consensus pattern (34 bp):
TACTGAAATGGGCTAAGGCCCAGACTGCCACTGC
Found at i:67808476 original size:10 final size:10
Alignment explanation
Indices: 67808461--67808485 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
67808451 GAATATCTTG
67808461 TCTTCTTTTC
1 TCTTCTTTTC
67808471 TCTTCTTTTC
1 TCTTCTTTTC
67808481 TCTTC
1 TCTTC
67808486 CCTGCTCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (10 bp):
TCTTCTTTTC
Found at i:67809806 original size:34 final size:33
Alignment explanation
Indices: 67809764--67809843 Score: 124
Period size: 34 Copynumber: 2.4 Consensus size: 33
67809754 TTGTTTGCAT
67809764 ACTGTACTGAAATGGGCTAAGGCCCAGACTGCC
1 ACTGTACTGAAATGGGCTAAGGCCCAGACTGCC
* *
67809797 ACTGTTACTGAAATGGGCTTAGGCCCAGACTGCT
1 ACTG-TACTGAAATGGGCTAAGGCCCAGACTGCC
67809831 ACTGCTACTGAAA
1 ACTG-TACTGAAA
67809844 GAGGGGCTAA
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
33 4 0.09
34 39 0.91
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (33 bp):
ACTGTACTGAAATGGGCTAAGGCCCAGACTGCC
Found at i:67810927 original size:41 final size:41
Alignment explanation
Indices: 67810870--67810951 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
67810860 TTACAATTCC
*
67810870 CATAGAGATAGGGAACATTCATTTCAATAGAGCCCTACACG
1 CATAGAGATAGGGAACATTCATTTCAATAGAGACCTACACG
*
67810911 CATAGAGTTAGGGAACATTCATTTCAATAGAGACCTACACG
1 CATAGAGATAGGGAACATTCATTTCAATAGAGACCTACACG
67810952 ATTTAGGAGC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.23
Consensus pattern (41 bp):
CATAGAGATAGGGAACATTCATTTCAATAGAGACCTACACG
Found at i:67815295 original size:18 final size:17
Alignment explanation
Indices: 67815272--67815309 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
67815262 GTTGGGCCAA
67815272 AATGGGCCATGTGGGCCC
1 AATGGG-CATGTGGGCCC
*
67815290 AATGGGCTTGTGGGCCC
1 AATGGGCATGTGGGCCC
67815307 AAT
1 AAT
67815310 ACAGATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.18, C:0.24, G:0.37, T:0.21
Consensus pattern (17 bp):
AATGGGCATGTGGGCCC
Found at i:67815768 original size:28 final size:27
Alignment explanation
Indices: 67815736--67815801 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 27
67815726 TTGGAAGAAG
67815736 TACTG-TATTAGTGGCTTTGCCACGTAGT
1 TACTGCTATTAGTGGCTTTGCCACGT--T
* *
67815764 TACTGCT-CTGGTGGCTTTGCCACGTT
1 TACTGCTATTAGTGGCTTTGCCACGTT
*
67815790 TACTGTTATTAG
1 TACTGCTATTAG
67815802 CAGCATTGTT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
26 7 0.23
27 2 0.06
28 21 0.68
29 1 0.03
ACGTcount: A:0.15, C:0.20, G:0.24, T:0.41
Consensus pattern (27 bp):
TACTGCTATTAGTGGCTTTGCCACGTT
Found at i:67815866 original size:21 final size:21
Alignment explanation
Indices: 67815842--67815898 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
67815832 GCTGTGATAT
* *
67815842 TGGTGTCTTGGTTGGTACGGG
1 TGGTGTGTTGGTTGGTACAGG
67815863 TGGTGTGTTGGTTGGTACAGG
1 TGGTGTGTTGGTTGGTACAGG
67815884 TGGTGTGTTGGTTGG
1 TGGTGTGTTGGTTGG
67815899 ATTGGGGTGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.05, C:0.05, G:0.49, T:0.40
Consensus pattern (21 bp):
TGGTGTGTTGGTTGGTACAGG
Found at i:67815972 original size:28 final size:28
Alignment explanation
Indices: 67815927--67815992 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 28
67815917 ACTGCACTGT
* * *
67815927 ACTGATACTGAATTGGGCTTAGGCCCAC
1 ACTGTTACTGAATAGGGCTAAGGCCCAC
* *
67815955 ACTGTTACTGTATAGGGCTAAGGCCCAG
1 ACTGTTACTGAATAGGGCTAAGGCCCAC
67815983 ACTGTTACTG
1 ACTGTTACTG
67815993 CAGGCTATTT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (28 bp):
ACTGTTACTGAATAGGGCTAAGGCCCAC
Found at i:67817319 original size:15 final size:14
Alignment explanation
Indices: 67817299--67817328 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
67817289 AAGGGGTTCC
67817299 CCAAAACACATCCAT
1 CCAAAACACA-CCAT
67817314 CCAAAACACACCAT
1 CCAAAACACACCAT
67817328 C
1 C
67817329 ACATATGTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.47, C:0.43, G:0.00, T:0.10
Consensus pattern (14 bp):
CCAAAACACACCAT
Found at i:67818306 original size:19 final size:19
Alignment explanation
Indices: 67818282--67818319 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
67818272 AAAGAAGGTA
67818282 AAGTGGTGCTATGGTGGTG
1 AAGTGGTGCTATGGTGGTG
* *
67818301 AAGTGGTGGTTTGGTGGTG
1 AAGTGGTGCTATGGTGGTG
67818320 GTAGTATCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.13, C:0.03, G:0.50, T:0.34
Consensus pattern (19 bp):
AAGTGGTGCTATGGTGGTG
Found at i:67827831 original size:14 final size:14
Alignment explanation
Indices: 67827812--67827843 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
67827802 GGTAGTCTTA
67827812 CACAGTCTCAATTT
1 CACAGTCTCAATTT
*
67827826 CACAGTCTCAGTTT
1 CACAGTCTCAATTT
67827840 CACA
1 CACA
67827844 ACCCTAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.31
Consensus pattern (14 bp):
CACAGTCTCAATTT
Found at i:67828511 original size:17 final size:17
Alignment explanation
Indices: 67828489--67828523 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
67828479 AGAGAGTAAA
67828489 CAATTTAAAATTCAGCT
1 CAATTTAAAATTCAGCT
67828506 CAATTTAAAATTCAGCT
1 CAATTTAAAATTCAGCT
67828523 C
1 C
67828524 GACAATTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.20, G:0.06, T:0.34
Consensus pattern (17 bp):
CAATTTAAAATTCAGCT
Found at i:67829198 original size:18 final size:21
Alignment explanation
Indices: 67829175--67829216 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
67829165 AATATTAAAT
67829175 TTAATT-TATT-TAAA-ATAA
1 TTAATTCTATTGTAAAGATAA
67829193 TTAATTCTATTGTAAAGATAA
1 TTAATTCTATTGTAAAGATAA
67829214 TTA
1 TTA
67829217 TATATTTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.29
19 4 0.19
20 4 0.19
21 7 0.33
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (21 bp):
TTAATTCTATTGTAAAGATAA
Found at i:67830040 original size:21 final size:24
Alignment explanation
Indices: 67829996--67830042 Score: 64
Period size: 21 Copynumber: 2.1 Consensus size: 24
67829986 ATTAATATTT
67829996 ATTAATATAAAAATAATGATAACA
1 ATTAATATAAAAATAATGATAACA
*
67830020 ATTAA-ATTAAAA-AAT-ATAACA
1 ATTAATATAAAAATAATGATAACA
67830041 AT
1 AT
67830043 ACTGTAACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 8 0.36
22 3 0.14
23 6 0.27
24 5 0.23
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (24 bp):
ATTAATATAAAAATAATGATAACA
Found at i:67836411 original size:75 final size:75
Alignment explanation
Indices: 67836285--67836427 Score: 220
Period size: 75 Copynumber: 1.9 Consensus size: 75
67836275 GAAAACCAAG
* *
67836285 ATTATTCTCTTATTAATATAGAAGTCAAATGGAAAGTTAGAAAAAATAATTATATTC-TTTCTAA
1 ATTATTCTCTTATTAATAGAGAAGACAAATGGAAAGTTAGAAAAAATAATTATATTCTTTTC-AA
67836349 AAGAGTATAGA
65 AAGAGTATAGA
67836360 ATTATTC-CATTATTAATAGAGAAGACAAATGGAAAGTTAG-AAAAATGAATTATATTCTTTTCA
1 ATTATTCTC-TTATTAATAGAGAAGACAAATGGAAAGTTAGAAAAAAT-AATTATATTCTTTTCA
67836423 AAAGA
64 AAAGA
67836428 ATATTAATTT
Statistics
Matches: 63, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
74 7 0.11
75 52 0.83
76 4 0.06
ACGTcount: A:0.46, C:0.07, G:0.13, T:0.34
Consensus pattern (75 bp):
ATTATTCTCTTATTAATAGAGAAGACAAATGGAAAGTTAGAAAAAATAATTATATTCTTTTCAAA
AGAGTATAGA
Found at i:67836611 original size:116 final size:116
Alignment explanation
Indices: 67836407--67836635 Score: 386
Period size: 116 Copynumber: 2.0 Consensus size: 116
67836397 TAGAAAAATG
* *
67836407 AATTATATTCTTTTCAAAAGAATATTAATTTCCAAGTCTTTTATATTTTGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCAAGTCTTTTATATTTTAACCGAAATTAATTAA
*
67836472 TATAACTGTTTATATTAATAAATTTGGTAAAATATATACAATTAATATATT
66 TATAACTGTTTATATTAATAAATTTCGTAAAATATATACAATTAATATATT
* * *
67836523 AATTATATTCTTTCCAAACGAATATTAATTTCCATGTCTTTTATATTTTAACTGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCAAGTCTTTTATATTTTAACCGAAATTAATTAA
* *
67836588 TATAACTTTTTGTATTAATAAATTTCGTAAAATATATACAATTAATAT
66 TATAACTGTTTATATTAATAAATTTCGTAAAATATATACAATTAATAT
67836636 TTTGTATGAA
Statistics
Matches: 105, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
116 105 1.00
ACGTcount: A:0.41, C:0.09, G:0.05, T:0.45
Consensus pattern (116 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCAAGTCTTTTATATTTTAACCGAAATTAATTAA
TATAACTGTTTATATTAATAAATTTCGTAAAATATATACAATTAATATATT
Found at i:67836710 original size:71 final size:71
Alignment explanation
Indices: 67836632--67836990 Score: 282
Period size: 71 Copynumber: 5.1 Consensus size: 71
67836622 TATACAATTA
67836632 ATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCGAAAAGAATATTAATTTCTATA
1 ATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCGAAAAGAATATTAATTTCTATA
67836697 TCTTTT
66 TCTTTT
* * * ** * * * *
67836703 ATATTTTG-ACCGAAAT-TAATTAATATAATTGTTTATA-T-ATT--AATAA-ATTCAGTAATAT
1 ATATTTTGTA-TG-AATCAAATTCATAT-ATTAATTATATTCTTTCGAA-AAGAAT-ATTAATTT
* * *
67836761 ATATA-CAATTA
61 CTATATC-TTTT
67836772 ATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCGAAAAGAATATTAATTTCTATA
1 ATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCGAAAAGAATATTAATTTCTATA
67836837 TCTTTT
66 TCTTTT
* * * ** * * * *
67836843 ATATTTTG-ACCGAAAT-TAATTAATATAATTGTTTATA-T-ATT--AATAA-ATTCAGTAATAT
1 ATATTTTGTA-TG-AATCAAATTCATAT-ATTAATTATATTCTTTCGAA-AAGAAT-ATTAATTT
* * *
67836901 ATATA-CAATTA
61 CTATATC-TTTT
67836912 ATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCGAAAAGAATATTAATTTCTATA
1 ATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCGAAAAGAATATTAATTTCTATA
67836977 TCTTTT
66 TCTTTT
67836983 ATATTTTG
1 ATATTTTG
67836991 ACCGAAATTA
Statistics
Matches: 212, Mismatches: 48, Indels: 56
0.67 0.15 0.18
Matches are distributed among these distances:
68 32 0.15
69 64 0.30
70 12 0.06
71 72 0.34
72 32 0.15
ACGTcount: A:0.40, C:0.07, G:0.06, T:0.47
Consensus pattern (71 bp):
ATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCGAAAAGAATATTAATTTCTATA
TCTTTT
Found at i:67836798 original size:69 final size:70
Alignment explanation
Indices: 67836600--67837088 Score: 286
Period size: 69 Copynumber: 7.0 Consensus size: 70
67836590 TAACTTTTTG
*
67836600 TATTAATAAATTTC-GTAAAATATATACAATTAATATTTTGTATGAATCAAATTCATAT-ATTAA
1 TATTAATAAA-TTCAGTAATATATATACAATTAATATTTTGTATGAATCAAATTCATATAATTAA
67836663 TTATAT
65 TTATAT
* * * * * * * * * *
67836669 TCTTTCGAA-AAGAAT-ATTAATTTCTATATC-TTTTATATTTTG-ACCGAAAT-TAATTAATAT
1 T-ATT--AATAA-ATTCAGTAATATATATA-CAATTAATATTTTGTA-TG-AATCAAATTCATAT
**
67836729 AATTGTTTATA-
59 AATTAATTATAT
67836740 TATTAATAAATTCAGTAATATATATACAATTAATATTTTGTATGAATCAAATTCATAT-ATTAAT
1 TATTAATAAATTCAGTAATATATATACAATTAATATTTTGTATGAATCAAATTCATATAATTAAT
67836804 TATAT
66 TATAT
* * * * * * * * * *
67836809 TCTTTCGAA-AAGAAT-ATTAATTTCTATATC-TTTTATATTTTG-ACCGAAAT-TAATTAATAT
1 T-ATT--AATAA-ATTCAGTAATATATATA-CAATTAATATTTTGTA-TG-AATCAAATTCATAT
**
67836869 AATTGTTTATA-
59 AATTAATTATAT
67836880 TATTAATAAATTCAGTAATATATATACAATTAATATTTTGTATGAATCAAATTCATAT-ATTAAT
1 TATTAATAAATTCAGTAATATATATACAATTAATATTTTGTATGAATCAAATTCATATAATTAAT
67836944 TATAT
66 TATAT
* * * * * * * * * *
67836949 TCTTTCGAA-AAGAAT-ATTAATTTCTATATC-TTTTATATTTTG-ACCGAAAT-TAATTAATAT
1 T-ATT--AATAA-ATTCAGTAATATATATA-CAATTAATATTTTGTA-TG-AATCAAATTCATAT
**
67837009 AATTGTTTATA-
59 AATTAATTATAT
67837020 TATTAATAAATTCAGTAATATATATACAATTAATATTTTGTATGAATCAAATTCATAT-ATTAAT
1 TATTAATAAATTCAGTAATATATATACAATTAATATTTTGTATGAATCAAATTCATATAATTAAT
67837084 TATAT
66 TATAT
67837089 CTAAGTTTTT
Statistics
Matches: 304, Mismatches: 73, Indels: 86
0.66 0.16 0.19
Matches are distributed among these distances:
68 48 0.16
69 96 0.32
70 18 0.06
71 95 0.31
72 47 0.15
ACGTcount: A:0.41, C:0.07, G:0.06, T:0.46
Consensus pattern (70 bp):
TATTAATAAATTCAGTAATATATATACAATTAATATTTTGTATGAATCAAATTCATATAATTAAT
TATAT
Found at i:67836812 original size:140 final size:140
Alignment explanation
Indices: 67836511--67837088 Score: 1036
Period size: 140 Copynumber: 4.1 Consensus size: 140
67836501 AAATATATAC
* * * * * * *
67836511 AATTAATATATTAATTATATTCTTTCCAAACGAATATTAATTTCCATGTCTTTTATATTTTAACT
1 AATTCATATATTAATTATATTCTTTCGAAAAGAATATTAATTTCTATATCTTTTATATTTTGACC
* * *
67836576 GAAATTAATTAATATAACT-TTT-TGTATTAATAAATTTC-GTAAAATATATACAATTAATATTT
66 GAAATTAATTAATATAATTGTTTATATATTAATAAA-TTCAGTAATATATATACAATTAATATTT
67836638 TGTATGAATCA
130 TGTATGAATCA
67836649 AATTCATATATTAATTATATTCTTTCGAAAAGAATATTAATTTCTATATCTTTTATATTTTGACC
1 AATTCATATATTAATTATATTCTTTCGAAAAGAATATTAATTTCTATATCTTTTATATTTTGACC
67836714 GAAATTAATTAATATAATTGTTTATATATTAATAAATTCAGTAATATATATACAATTAATATTTT
66 GAAATTAATTAATATAATTGTTTATATATTAATAAATTCAGTAATATATATACAATTAATATTTT
67836779 GTATGAATCA
131 GTATGAATCA
67836789 AATTCATATATTAATTATATTCTTTCGAAAAGAATATTAATTTCTATATCTTTTATATTTTGACC
1 AATTCATATATTAATTATATTCTTTCGAAAAGAATATTAATTTCTATATCTTTTATATTTTGACC
67836854 GAAATTAATTAATATAATTGTTTATATATTAATAAATTCAGTAATATATATACAATTAATATTTT
66 GAAATTAATTAATATAATTGTTTATATATTAATAAATTCAGTAATATATATACAATTAATATTTT
67836919 GTATGAATCA
131 GTATGAATCA
67836929 AATTCATATATTAATTATATTCTTTCGAAAAGAATATTAATTTCTATATCTTTTATATTTTGACC
1 AATTCATATATTAATTATATTCTTTCGAAAAGAATATTAATTTCTATATCTTTTATATTTTGACC
67836994 GAAATTAATTAATATAATTGTTTATATATTAATAAATTCAGTAATATATATACAATTAATATTTT
66 GAAATTAATTAATATAATTGTTTATATATTAATAAATTCAGTAATATATATACAATTAATATTTT
67837059 GTATGAATCA
131 GTATGAATCA
67837069 AATTCATATATTAATTATAT
1 AATTCATATATTAATTATAT
67837089 CTAAGTTTTT
Statistics
Matches: 427, Mismatches: 10, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
138 76 0.18
139 6 0.01
140 345 0.81
ACGTcount: A:0.41, C:0.07, G:0.05, T:0.47
Consensus pattern (140 bp):
AATTCATATATTAATTATATTCTTTCGAAAAGAATATTAATTTCTATATCTTTTATATTTTGACC
GAAATTAATTAATATAATTGTTTATATATTAATAAATTCAGTAATATATATACAATTAATATTTT
GTATGAATCA
Found at i:67839843 original size:27 final size:27
Alignment explanation
Indices: 67839813--67839990 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
67839803 ATATTGAGTC
* * * *
67839813 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
67839840 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
67839867 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
67839895 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
67839922 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
67839949 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
67839976 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67839991 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:67839952 original size:82 final size:81
Alignment explanation
Indices: 67839834--67839989 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
67839824 TGCTATATAA
* *
67839834 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
67839899 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
67839916 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
67839980 CACTTAGTGC
65 CACTTAGTGC
67839990 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:67840632 original size:42 final size:42
Alignment explanation
Indices: 67840585--67840667 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
67840575 TCCCTGAATA
* *
67840585 TAGACTCGTATATCTTCCATCCATAATATTTTCAGAATTTTT
1 TAGACTCGTATATCTTCCATCCATAAAATTTCCAGAATTTTT
*
67840627 TAGACTCGTATGTCTTCCATCCATAAAATTTCCAGAATTTT
1 TAGACTCGTATATCTTCCATCCATAAAATTTCCAGAATTTT
67840668 AGGTTTGGCC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.42
Consensus pattern (42 bp):
TAGACTCGTATATCTTCCATCCATAAAATTTCCAGAATTTTT
Found at i:67841626 original size:98 final size:99
Alignment explanation
Indices: 67841456--67841651 Score: 385
Period size: 98 Copynumber: 2.0 Consensus size: 99
67841446 TTCCTCAACT
67841456 CACGGCAACAAGGGGGGGTATGGATGAGACCATTTTTTTTTCATCACCCTTCCTTTTCATTGTTT
1 CACGGCAACAAGGGGGGGTATGGATGAGACCATTTTTTTTTCATCACCCTTCCTTTTCATTGTTT
67841521 AATTACCATGCTCTTTATTTTATTTTTCTTAGCC
66 AATTACCATGCTCTTTATTTTATTTTTCTTAGCC
67841555 CACGGCAACAAGGGGGGGTATGGATGAGACCA-TTTTTTTTCATCACCCTTCCTTTTCATTGTTT
1 CACGGCAACAAGGGGGGGTATGGATGAGACCATTTTTTTTTCATCACCCTTCCTTTTCATTGTTT
67841619 AATTACCATGCTCTTTATTTTATTTTTCTTAGC
66 AATTACCATGCTCTTTATTTTATTTTTCTTAGC
67841652 ATACATCACT
Statistics
Matches: 97, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
98 65 0.67
99 32 0.33
ACGTcount: A:0.20, C:0.21, G:0.16, T:0.42
Consensus pattern (99 bp):
CACGGCAACAAGGGGGGGTATGGATGAGACCATTTTTTTTTCATCACCCTTCCTTTTCATTGTTT
AATTACCATGCTCTTTATTTTATTTTTCTTAGCC
Found at i:67843142 original size:50 final size:50
Alignment explanation
Indices: 67843026--67843161 Score: 134
Period size: 50 Copynumber: 2.7 Consensus size: 50
67843016 TTTGGGGAAT
* * *
67843026 GAGA-TCCCACGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGA
1 GAGACTCCCA-GTAAGACCATGTCTGGGATATGGCATGGGCACCGAGATGA
** * * *
67843076 GAGGTTTCCC-GAAAGACCATGTCTGGGATATGGCATGGGCACTGATATGA
1 GA-GACTCCCAGTAAGACCATGTCTGGGATATGGCATGGGCACCGAGATGA
* *
67843126 GA-ACTCCCATGTAAGACCATATCTAGGATATGGCAT
1 GAGACTCCCA-GTAAGACCATGTCTGGGATATGGCAT
67843162 TAGCAATACA
Statistics
Matches: 70, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
48 4 0.06
50 61 0.87
51 1 0.01
52 4 0.06
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (50 bp):
GAGACTCCCAGTAAGACCATGTCTGGGATATGGCATGGGCACCGAGATGA
Found at i:67845927 original size:16 final size:17
Alignment explanation
Indices: 67845906--67845938 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
67845896 CGTTTGGCTC
*
67845906 CAAGGA-TTATTTATTT
1 CAAGGAGTTATTAATTT
67845922 CAAGGAGTTATTAATTT
1 CAAGGAGTTATTAATTT
67845939 TTATTAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.33, C:0.06, G:0.15, T:0.45
Consensus pattern (17 bp):
CAAGGAGTTATTAATTT
Found at i:67846839 original size:577 final size:569
Alignment explanation
Indices: 67845255--67846846 Score: 1749
Period size: 574 Copynumber: 2.8 Consensus size: 569
67845245 ATCTCGTGCT
** *
67845255 AATTGTCTTAAACCTC-TTAACACCAAAACTTGTATGGACAATTATTAACTTCGTTTTTGCTTTG
1 AATTGTCTTAAACCTCTTTAACACCAAAACTTGTATCAACAATTATTAACTTCATTTTTGC-TT-
* * * *
67845319 TTACATTTGGCTCAAAGCTTTATTTATTTTAAGGATATGTTAATTTTTATTAATT-AAAAAT-AT
64 TTACGTTTGGCTCAAAGGTTTATTTATTTCAAGGATTTGTTAATTTTTATTAATTAAAAAATAAT
*
67845382 TATATAAATTGTAAGAAAATGAATACAAAAATATCATTTTATATAATACTTAATTATTTTTATCT
129 TACAT-AATTGTAAGAAAATGAA-A-AAAAATATCATTTTATATAATACTT-ATTA-TTTTATCT
67845447 ATTAACCAAAAAATATTTACATAAATATATATGATATTTAATAATTTTAAATTA-TTTAAAAATA
189 ATTAACCAAAAAATATTTACATAAATAT-TA--A-ATTTAATAATTTTAAATTATTTTAAAAA-A
* ** * * * * *
67845511 AAAAAGTTAAAAAATTATTATATATGTATCTATATTATTATTCAAGCCTCTGACTGAGTTGGTGT
249 AAAAA-TTAAACAATTATTATATACATATCTATATTATTATTTAAGCCCCTAATTGAGTTAGTGT
* * * * ** *
67845576 CACAAGTCAATTGAACACTAATTTAATTAAAGAAACTACGAAAATGTCATTTCGTAATTAAAATA
313 CACGAGTCAACTGAACACCAAATCGATTAAA-AAA-TACGAAAATATCATTTCGTAATTAAAATA
* * * * *
67845641 AGTTATATTATTT----G-A--TGATATTCTTACTTAAAAAACAATAGAAAATTTGATGTAGATA
376 AGTTATATTGTTTGAGGGTATTTAATATTTTTACTTAAAAAACAATAAAAAATTTGACGTAGATA
** ** * * *
67845699 CTATGTGTAAATTCCTTGCATCTCCAAGAAGAGCCAAGCAATCTAAGGATTACCATAACTTTGTC
441 CTACATGTAAAACCCTTGCATCTCCAAGAACAGCCAAGCAATCTAAAGATTACCAAAAC-TTGTC
* * ** * * * *
67845764 AAAGTATCTTCATACCTCTCCAAACATTCTCACGCCACGGTTAATGGCTCTCAACGTCTCATGTG
505 AAACTATCTTCATACCTCTCCAAACATTCTCACACCACCATTAATAGCTCTCAACATCGCATATG
67845829 AATTGTCTTAAACCT-TTTAACACCAAAACTTGTATCAACAATTATTAACCTTCATTTTTGCTTG
1 AATTGTCTTAAACCTCTTTAACACCAAAACTTGTATCAACAATTATTAA-CTTCATTTTTGCTT-
* * * * *
67845893 TTACGTTTGGCTCCAAGGATTATTTATTTCAAGGAGTTATTAATTTTTATTAATTAAAACA-AA-
64 TTACGTTTGGCTCAAAGGTTTATTTATTTCAAGGATTTGTTAATTTTTATTAATTAAAAAATAAT
* *
67845956 TACATAAGTTGTAAGAAAATGAATACAAAATATCATTTTATATAATACTTAGTTCTTTTTATCTA
129 TACATAA-TTGTAAGAAAATGAA-AAAAAATATCATTTTATATAATACTTA-TT-ATTTTATCTA
* * *
67846021 TTAACCAAAAGAACATTTACATAAGTATTATATTTAATAATTTTAAATTA-TTTAAAAATTAAAA
190 TTAACCAAAA-AATATTTACATAAATATTAAATTTAATAATTTTAAATTATTTTAAAAA--AAAA
* * * * * *
67846085 AATTAAACAATTGTTATATACATATCTATATTATTAATTAAGTCCCTAATTGAATTAATATCACG
252 AATTAAACAATTATTATATACATATCTATATTATTATTTAAGCCCCTAATTGAGTTAGTGTCACG
* * *
67846150 AGTCAACTGAACACGACCAA-CTGAATTAAAAAAATTACGAAAATATCGTTTCATAATTAAAATA
317 AGTCAACTGAACAC--CAAATC-G-ATT-AAAAAA-TACGAAAATATCATTTCGTAATTAAAATA
* * * *
67846214 AATTATATTGTTTGAGGATATTTTAATATTTATACTT-AAAAA-AATAAAAAAATTGACGT-GAA
376 AGTTATATTGTTTGAGGGTA-TTTAATATTTTTACTTAAAAAACAATAAAAAATTTGACGTAG-A
* *
67846276 TACTACATGTAAAACCCTTGCATCTTCAATAACAGCCAAGCAATCTAAAGATTACCAAAAC-TGT
439 TACTACATGTAAAACCCTTGCATCTCCAAGAACAGCCAAGCAATCTAAAGATTACCAAAACTTGT
*
67846340 CAAACTATCTTCATACCTCTCCAAACA-TCTCACACCACCATTAATAGCTCTCAACATCGCGTAT
504 CAAACTATCTTCATACCTCTCCAAACATTCTCACACCACCATTAATAGCTCTCAACATCGCATAT
67846404 G
569 G
* *
67846405 -ATCTGTCTTAAACCTCTTTAACACCAAAACTTATATCAACAATTGTTAACTTGCATTTTTGCTT
1 AAT-TGTCTTAAACCTCTTTAACACCAAAACTTGTATCAACAATTATTAACTT-CATTTTTGCTT
* *
67846469 TACTATGTTTGGCTCAAAGGTTTATTTATTTCAAGGATTTGTTCATTTTTATTAATTAAAAAAAT
64 T--TACGTTTGGCTCAAAGGTTTATTTATTTCAAGGATTTGTTAATTTTTATTAATT-AAAAAAT
* *
67846534 AATTACATAGATTGTAAGAAAATGAAAATGAAATATCATTTGATATAATAC-T-TTATTTTATCT
126 AATTACATA-ATTGTAAGAAAATGAAAA-AAAATATCATTTTATATAATACTTATTATTTTATCT
* * * * *
67846597 ATTAACCAACAAATATTTATATAAATATTAAATTTAATAATTTTAAATTATTTTTAAAAAATAAT
189 ATTAACCAAAAAATATTTACATAAATATTAAATTTAATAATTTTAAATTATTTTAAAAAAAAAAA
* * * * *
67846662 TTAAACATTTTTTATATACATATTTATACTATTATTTAAGCCCCTAATTGAGTTAGTGTCATGAG
254 TTAAACAATTATTATATACATATCTATATTATTATTTAAGCCCCTAATTGAGTTAGTGTCACGAG
* ** * * * *
67846727 TCAACCGGGCACCAAATCGGTCACAAAAATAACGAAAATATC-CTTCTGTAATAAAAATAAGTTA
319 TCAACTGAACACCAAATCGATTA-AAAAAT-ACGAAAATATCATTTC-GTAATTAAAATAAGTTA
*
67846791 TATTGTTTGAGGGTATTTCAATATTTTTCCTTTTAAAAAACCAATAAAAAATTTGA
381 TATTGTTTGAGGGTATTT-AATATTTTTAC--TTAAAAAA-CAATAAAAAATTTGA
67846847 TGTGGTTGGA
Statistics
Matches: 859, Mismatches: 115, Indels: 85
0.81 0.11 0.08
Matches are distributed among these distances:
570 88 0.10
571 15 0.02
572 56 0.07
573 96 0.11
574 137 0.16
575 91 0.11
576 81 0.09
577 109 0.13
578 52 0.06
579 72 0.08
580 9 0.01
581 52 0.06
582 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.38
Consensus pattern (569 bp):
AATTGTCTTAAACCTCTTTAACACCAAAACTTGTATCAACAATTATTAACTTCATTTTTGCTTTT
ACGTTTGGCTCAAAGGTTTATTTATTTCAAGGATTTGTTAATTTTTATTAATTAAAAAATAATTA
CATAATTGTAAGAAAATGAAAAAAAATATCATTTTATATAATACTTATTATTTTATCTATTAACC
AAAAAATATTTACATAAATATTAAATTTAATAATTTTAAATTATTTTAAAAAAAAAAATTAAACA
ATTATTATATACATATCTATATTATTATTTAAGCCCCTAATTGAGTTAGTGTCACGAGTCAACTG
AACACCAAATCGATTAAAAAATACGAAAATATCATTTCGTAATTAAAATAAGTTATATTGTTTGA
GGGTATTTAATATTTTTACTTAAAAAACAATAAAAAATTTGACGTAGATACTACATGTAAAACCC
TTGCATCTCCAAGAACAGCCAAGCAATCTAAAGATTACCAAAACTTGTCAAACTATCTTCATACC
TCTCCAAACATTCTCACACCACCATTAATAGCTCTCAACATCGCATATG
Found at i:67848125 original size:41 final size:40
Alignment explanation
Indices: 67848068--67848226 Score: 194
Period size: 41 Copynumber: 3.9 Consensus size: 40
67848058 ATTTAGGAAC
*
67848068 TTTAGTGGCGTTTTTTAAAAAGCGCCGCTAATGCTCAGGGT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTC-GGGT
* *
67848109 TTTAGCGGCGTTTTTTAAAAAGCGTCGCTAATGATCGGGT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCGGGT
* * * * *
67848149 CTTTAGCGGCGTTTCTAAAAAAGCACCGCTAATACTCGAGGA
1 -TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCG-GGT
*
67848191 TTTAGCGGCG-TTTTTAATGAAGCGCCGCTAATGCTC
1 TTTAGCGGCGTTTTTTAA-AAAGCGCCGCTAATGCTC
67848227 AGGTCAATAG
Statistics
Matches: 100, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
40 9 0.09
41 89 0.89
42 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (40 bp):
TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCGGGT
Found at i:67848359 original size:14 final size:15
Alignment explanation
Indices: 67848332--67848360 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
67848322 TGAAAATCGA
67848332 TCCCCCTTCTTTTTT
1 TCCCCCTTCTTTTTT
67848347 TCCCCCTTCTTTTT
1 TCCCCCTTCTTTTT
67848361 CCCAAAATCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (15 bp):
TCCCCCTTCTTTTTT
Found at i:67852695 original size:43 final size:44
Alignment explanation
Indices: 67852646--67852853 Score: 203
Period size: 44 Copynumber: 4.8 Consensus size: 44
67852636 TTTTTGCGAG
* * *
67852646 AAGCGCCGCTAAAGAT-TTGATCTATAGCGGCGTTTGTGATAAA
1 AAGCGCCGCTAAAGGTCTTGATCTTTAGCGGCGTTTGTGAGAAA
* * * * *
67852689 AAGCGCCGCTAAATGTCATGGTTTTTAGTGGCGTTTGTGAGAAA
1 AAGCGCCGCTAAAGGTCTTGATCTTTAGCGGCGTTTGTGAGAAA
* * * * *
67852733 AA-CGTCGCTGAAGCTCATTG-TCTTTAGCGGCATTTGTGGGAAA
1 AAGCGCCGCTAAAGGTC-TTGATCTTTAGCGGCGTTTGTGAGAAA
* * *
67852776 AAGCGCTGCTAAAGGTCTT-AGTCTTTAGTGGCGTTTGTG-G-GA
1 AAGCGCCGCTAAAGGTCTTGA-TCTTTAGCGGCGTTTGTGAGAAA
*
67852818 AAGCGCCGCTAAAGGTCTTGTTCTTTAGCGGCGTTT
1 AAGCGCCGCTAAAGGTCTTGATCTTTAGCGGCGTTT
67852854 ATTTCTAAAA
Statistics
Matches: 132, Mismatches: 27, Indels: 13
0.77 0.16 0.08
Matches are distributed among these distances:
42 33 0.25
43 48 0.36
44 51 0.39
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (44 bp):
AAGCGCCGCTAAAGGTCTTGATCTTTAGCGGCGTTTGTGAGAAA
Found at i:67852864 original size:87 final size:85
Alignment explanation
Indices: 67852626--67852853 Score: 251
Period size: 86 Copynumber: 2.6 Consensus size: 85
67852616 AGGTTATGTT
* * *
67852626 TTTAGTGGCGTTTTTGCGAGAAGCGCCGCTAAAGAT-TTGATCTATAGCGGCGTTTGTGATAAAA
1 TTTAGTGGCGTTTGTGGGA-AAGCGCCGCTAAAGATCTTG-TCTTTAGCGGCGTTTGTGATAAAA
* * *
67852690 AGCGCCGCTAAATGTCATGGTT
64 AGCGCCGCTAAAGGTCATAGTC
* * * * * * **
67852712 TTTAGTGGCGTTTGTGAGAAAAACGTCGCTGAAGCTCATTGTCTTTAGCGGCATTTGTGGGAAAA
1 TTTAGTGGCGTTTGTG-GGAAAGCGCCGCTAAAGATC-TTGTCTTTAGCGGCGTTTGTGATAAAA
* *
67852777 AGCGCTGCTAAAGGTCTTAGTC
64 AGCGCCGCTAAAGGTCATAGTC
*
67852799 TTTAGTGGCGTTTGTGGGAAAGCGCCGCTAAAGGTCTTGTTCTTTAGCGGCGTTT
1 TTTAGTGGCGTTTGTGGGAAAGCGCCGCTAAAGATCTTG-TCTTTAGCGGCGTTT
67852854 ATTTCTAAAA
Statistics
Matches: 116, Mismatches: 22, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
85 3 0.03
86 56 0.48
87 54 0.47
88 3 0.03
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.32
Consensus pattern (85 bp):
TTTAGTGGCGTTTGTGGGAAAGCGCCGCTAAAGATCTTGTCTTTAGCGGCGTTTGTGATAAAAAG
CGCCGCTAAAGGTCATAGTC
Found at i:67852944 original size:21 final size:21
Alignment explanation
Indices: 67852918--67852958 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
67852908 GGTGCTTCTC
*
67852918 AAAGCGCCGCTAAAGGCCTAA
1 AAAGCGCCGCTAAAAGCCTAA
*
67852939 AAAGCGCCGTTAAAAGCCTA
1 AAAGCGCCGCTAAAAGCCTA
67852959 TTTTGATGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.39, C:0.27, G:0.22, T:0.12
Consensus pattern (21 bp):
AAAGCGCCGCTAAAAGCCTAA
Found at i:67853353 original size:6 final size:6
Alignment explanation
Indices: 67853342--67853382 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
67853332 GCTTATTCAA
* *
67853342 CACCAT CACCAT CACCAT CACCAT CACCAC CACCAC CACCA
1 CACCAT CACCAT CACCAT CACCAT CACCAT CACCAT CACCA
67853383 CCATCACCGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.34, C:0.56, G:0.00, T:0.10
Consensus pattern (6 bp):
CACCAT
Found at i:67853383 original size:6 final size:6
Alignment explanation
Indices: 67853342--67853390 Score: 53
Period size: 6 Copynumber: 8.2 Consensus size: 6
67853332 GCTTATTCAA
* * * * *
67853342 CACCAT CACCAT CACCAT CACCAT CACCAC CACCAC CACCAC CATCAC
1 CACCAC CACCAC CACCAC CACCAC CACCAC CACCAC CACCAC CACCAC
67853390 C
1 C
67853391 GTCCCCGCTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.33, C:0.57, G:0.00, T:0.10
Consensus pattern (6 bp):
CACCAC
Found at i:67855113 original size:23 final size:23
Alignment explanation
Indices: 67855085--67855133 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
67855075 ATATACTATT
*
67855085 AAAGAGAATTGATTTTGTGTTAG
1 AAAGAGAATTGATTTTCTGTTAG
67855108 AAAGAGAATTGATTTTCTGTTAG
1 AAAGAGAATTGATTTTCTGTTAG
67855131 AAA
1 AAA
67855134 ATGTAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.39, C:0.02, G:0.22, T:0.37
Consensus pattern (23 bp):
AAAGAGAATTGATTTTCTGTTAG
Found at i:67855269 original size:19 final size:20
Alignment explanation
Indices: 67855242--67855283 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
67855232 TTCATCATGA
*
67855242 AAAAAATT-AAATTCAAATT
1 AAAAAATTAAAATTCAAAAT
*
67855261 AAAATATTAAAATTCAAAAT
1 AAAAAATTAAAATTCAAAAT
67855281 AAA
1 AAA
67855284 TCTATGTGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.29
Consensus pattern (20 bp):
AAAAAATTAAAATTCAAAAT
Found at i:67855361 original size:13 final size:13
Alignment explanation
Indices: 67855343--67855370 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
67855333 AATTTTTTCT
67855343 CTTTATTAAATAC
1 CTTTATTAAATAC
67855356 CTTTATTAAATAC
1 CTTTATTAAATAC
67855369 CT
1 CT
67855371 AAAAAGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.46
Consensus pattern (13 bp):
CTTTATTAAATAC
Done.