Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 201 of 235
Found at i:68396588 original size:21 final size:20
Alignment explanation
Indices: 68396555--68396596 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
68396545 AACCTGAGTA
*
68396555 GAGGGCTGACACGACCGTGT
1 GAGGGCTCACACGACCGTGT
*
68396575 GAGGGTCTCACACGTCCGTGT
1 GAGGG-CTCACACGACCGTGT
68396596 G
1 G
68396597 CCCACCAGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.17, C:0.26, G:0.38, T:0.19
Consensus pattern (20 bp):
GAGGGCTCACACGACCGTGT
Found at i:68397194 original size:6 final size:6
Alignment explanation
Indices: 68397185--68397237 Score: 54
Period size: 6 Copynumber: 8.7 Consensus size: 6
68397175 AAAGAAAAAT
* * *
68397185 AATAAA AATAAA AATAAA AA-CAA AACAAA AATAAC AATAAA TAATTAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA -AA-TAAA
68397234 AATA
1 AATA
68397238 TTCACTTAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
5 4 0.10
6 27 0.69
7 4 0.10
8 4 0.10
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:68403443 original size:22 final size:24
Alignment explanation
Indices: 68403401--68403444 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
68403391 TAACTAAGTT
68403401 TACTTACTTTTCTAACTTAATTCA
1 TACTTACTTTTCTAACTTAATTCA
68403425 TACTT-CTTTTCT-ACTTAATT
1 TACTTACTTTTCTAACTTAATT
68403445 TCTTACCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 8 0.40
23 7 0.35
24 5 0.25
ACGTcount: A:0.25, C:0.20, G:0.00, T:0.55
Consensus pattern (24 bp):
TACTTACTTTTCTAACTTAATTCA
Found at i:68404411 original size:17 final size:18
Alignment explanation
Indices: 68404391--68404424 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
68404381 ATTACAATTG
68404391 TACAAATATA-ATTTTTT
1 TACAAATATATATTTTTT
*
68404408 TACACATATATATTTTT
1 TACAAATATATATTTTT
68404425 ATTATCATAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (18 bp):
TACAAATATATATTTTTT
Found at i:68404481 original size:11 final size:12
Alignment explanation
Indices: 68404459--68404514 Score: 55
Period size: 11 Copynumber: 4.7 Consensus size: 12
68404449 AATTTGTTTC
68404459 ATAATATATAAT
1 ATAATATATAAT
68404471 ATAAT-TATAAT
1 ATAATATATAAT
68404482 ATAATCA-ATTAAT
1 ATAAT-ATA-TAAT
*
68404495 AATAATATAAAAT
1 -ATAATATATAAT
68404508 AT-ATATA
1 ATAATATA
68404515 CCTAAGAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
11 16 0.42
12 8 0.21
13 8 0.21
14 6 0.16
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (12 bp):
ATAATATATAAT
Found at i:68407646 original size:56 final size:56
Alignment explanation
Indices: 68407578--68407689 Score: 161
Period size: 56 Copynumber: 2.0 Consensus size: 56
68407568 AAAAACGCAC
** *
68407578 AGAACCAAAGGAAGCAGCCAAAAATGATGATTGGAGCTGTCAATCAGAGGAAATAA
1 AGAACCAAAGGAAGCAGCCAAAAACAATGATCGGAGCTGTCAATCAGAGGAAATAA
* * * *
68407634 AGAACTAAAGGAAGCAGCCAGAAACAATGATCGGAGCTGTTAATCATAGGAAATAA
1 AGAACCAAAGGAAGCAGCCAAAAACAATGATCGGAGCTGTCAATCAGAGGAAATAA
68407690 CTGGCAATCT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 49 1.00
ACGTcount: A:0.46, C:0.14, G:0.24, T:0.15
Consensus pattern (56 bp):
AGAACCAAAGGAAGCAGCCAAAAACAATGATCGGAGCTGTCAATCAGAGGAAATAA
Found at i:68410429 original size:31 final size:31
Alignment explanation
Indices: 68410393--68410457 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
68410383 ATTAAATTTA
68410393 AAAGTTGATCTAAAATTTGGATAGAAATATT
1 AAAGTTGATCTAAAATTTGGATAGAAATATT
68410424 AAAGTTGATCTAAAATTTGGATAGAAATATT
1 AAAGTTGATCTAAAATTTGGATAGAAATATT
68410455 AAA
1 AAA
68410458 CTCGAAAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.48, C:0.03, G:0.15, T:0.34
Consensus pattern (31 bp):
AAAGTTGATCTAAAATTTGGATAGAAATATT
Found at i:68412185 original size:24 final size:25
Alignment explanation
Indices: 68412151--68412205 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 25
68412141 GGAAATAAGT
*
68412151 TATATACATAATAGATTTAAAA-AACA
1 TATATATA-AATA-ATTTAAAACAACA
68412177 TATATATAAATAATTTAAAACAAC-
1 TATATATAAATAATTTAAAACAACA
68412201 TATAT
1 TATAT
68412206 GAAAAAACAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 13 0.48
25 7 0.26
26 7 0.26
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.35
Consensus pattern (25 bp):
TATATATAAATAATTTAAAACAACA
Found at i:68414156 original size:45 final size:45
Alignment explanation
Indices: 68414098--68414346 Score: 204
Period size: 45 Copynumber: 5.5 Consensus size: 45
68414088 ACTTCGATTG
*
68414098 GCTCCACTGCAACTTTAGGGAGATAAGATCTGCTATCTTTAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATCTGCTATCTTTAGTCT
* * *
68414143 GCTCCACTGCAACTTCAAGGAGATAAGATCTTCTAACTTTAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATCTGCTATCTTTAGTCT
* * *
68414188 GTTCCATTGCAACTTCAGGGAGATAAGAAT-TGGGTAAT-TTTA-TCCT
1 GCTCCACTGCAACTTCAGGGAGATAAG-ATCT-GCT-ATCTTTAGT-CT
* ** ** *** *
68414234 ACTTTACTGCAACTTCAGAAAGATAAGGAT-TG-GGGC-TTCGATCT
1 GCTCCACTGCAACTTCAGGGAGATAA-GATCTGCTATCTTTAG-TCT
* * * * *
68414278 GCTACACTGAAACTTTAGGGAGATAAGATCTGTTATCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATCTGCTATCTTTAGTCT
*
68414323 GCTCCACTACAACTTCAGGGAGAT
1 GCTCCACTGCAACTTCAGGGAGAT
68414347 GAGACTTGCT
Statistics
Matches: 156, Mismatches: 37, Indels: 22
0.73 0.17 0.10
Matches are distributed among these distances:
43 5 0.03
44 23 0.15
45 93 0.60
46 33 0.21
47 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (45 bp):
GCTCCACTGCAACTTCAGGGAGATAAGATCTGCTATCTTTAGTCT
Found at i:68414298 original size:90 final size:89
Alignment explanation
Indices: 68414005--68414306 Score: 287
Period size: 90 Copynumber: 3.3 Consensus size: 89
68413995 TTTACTGCAA
* *
68414005 CTGCTCCACTGCAACTTTAGGGAGATACAG-TTCGTGTATTTTTTATCCTGCTTTACTGCAACTT
1 CTGCTCCACTGCAACTTTAGGGAGATA-AGATT-GGGTA-ATTTTATCCTGCTTTACTGCAACTT
68414069 CAGAAAGATAAGGATTGTGACTTCGAT
63 CAGAAAGATAAGGATTGTGACTTCGAT
* **
68414096 -TGGCTCCACTGCAACTTTAGGGAGATAAGATCT-GCT-ATCTTTAGT-CTGCTCCACTGCAACT
1 CT-GCTCCACTGCAACTTTAGGGAGATAAGAT-TGGGTAAT-TTTA-TCCTGCTTTACTGCAACT
* * * *
68414157 TCA-AGGAGATAA-GATCTTCTAACTT-TAGT
62 TCAGA-AAGATAAGGA--TTGTGACTTCGA-T
* * * *
68414186 CTGTTCCATTGCAACTTCAGGGAGATAAGAATTGGGTAATTTTATCCTACTTTACTGCAACTTCA
1 CTGCTCCACTGCAACTTTAGGGAGATAAG-ATTGGGTAATTTTATCCTGCTTTACTGCAACTTCA
* *
68414251 GAAAGATAAGGATTGGGGCTTCGAT
65 GAAAGATAAGGATTGTGACTTCGAT
* *
68414276 CTGCTACACTGAAACTTTAGGGAGATAAGAT
1 CTGCTCCACTGCAACTTTAGGGAGATAAGAT
68414307 CTGTTATCTT
Statistics
Matches: 167, Mismatches: 27, Indels: 36
0.73 0.12 0.16
Matches are distributed among these distances:
88 4 0.02
89 30 0.18
90 69 0.41
91 58 0.35
92 6 0.04
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (89 bp):
CTGCTCCACTGCAACTTTAGGGAGATAAGATTGGGTAATTTTATCCTGCTTTACTGCAACTTCAG
AAAGATAAGGATTGTGACTTCGAT
Found at i:68414303 original size:135 final size:133
Alignment explanation
Indices: 68414140--68414394 Score: 323
Period size: 135 Copynumber: 1.9 Consensus size: 133
68414130 CTATCTTTAG
* * * * * *
68414140 TCTGCTCCACTGCAACTTCAAGGAGATAAGATCT-TCTAACTTTAGTCTGTTCCATTGCAACTTC
1 TCTGCTACACTGAAACTTCAAGGAGATAAGATCTGT-TAACTTCAGTCTGCTCCACTACAACTTC
* * * *
68414204 AGGGAGATAAGAATTGGGTAATTTTATCCTACTTTACTGCAACTTCAGAAAGATAAGGATTGGGG
65 AGGGAGATAAGAATT-GCT-ACTTCAACCTACTTTACTGCAACTTCAGAAAGATAAGGATTGGGG
68414269 CTTCGA
128 CTTCGA
* * *
68414275 TCTGCTACACTGAAACTTTAGGGAGATAAGATCTGTTATCTTCAGTCTGCTCCACTACAACTTCA
1 TCTGCTACACTGAAACTTCAAGGAGATAAGATCTGTTAACTTCAGTCTGCTCCACTACAACTTCA
* * * *
68414340 GGGAGATGAGACTTGCTACTTCAACCTACTTTACTGCAACTTTAGAGAGATAAGG
66 GGGAGATAAGAATTGCTACTTCAACCTACTTTACTGCAACTTCAGAAAGATAAGG
68414395 TTTGCTATGA
Statistics
Matches: 102, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
133 33 0.32
134 2 0.02
135 66 0.65
136 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (133 bp):
TCTGCTACACTGAAACTTCAAGGAGATAAGATCTGTTAACTTCAGTCTGCTCCACTACAACTTCA
GGGAGATAAGAATTGCTACTTCAACCTACTTTACTGCAACTTCAGAAAGATAAGGATTGGGGCTT
CGA
Found at i:68426017 original size:128 final size:127
Alignment explanation
Indices: 68425749--68426069 Score: 444
Period size: 128 Copynumber: 2.5 Consensus size: 127
68425739 TTTAGTCTAA
* * * * *
68425749 CGAAAAACTGAAACCCAGCACGGTAGGGCACAATTCCTCGAATTTCCAAACATTGGACATTGCCT
1 CGAAAATC-GAAACCCAGCACGATAGGGCACGATTCCCCGAATTTCCAAACATTGAACATTGCCT
* ** *
68425814 TGCTTTAGAATTTTTAAAACACGAGGGAAATTCTAAAGGAATATTCAATTATTTTGAACAAAC
65 TACTTTAGAATTTAAAAAACACGAGGGAAATTCTAAAGGAATATTCAATTACTTTGAACAAAC
* * *
68425877 CGAAAATCGAAACCTAGTACGATAGGGCACGATTCCCCGAATTTCCAAACGTTGAACATTGCCTT
1 CGAAAATCGAAACCCAGCACGATAGGGCACGATTCCCCGAATTTCCAAACATTGAACATTGCCTT
* * *
68425942 ATTTTAGAATTTGAAAAAACACGAGTGAAATTCTAAAGGAATATTCGATTACTTTGAACAAAC
66 ACTTTAGAATTT-AAAAAACACGAGGGAAATTCTAAAGGAATATTCAATTACTTTGAACAAAC
* * * **
68426005 GGGAAATCGAAACCCAGCACGATAGGGCACGATTCCCCGAATTTTCAAACATCAAACATTGCCTT
1 CGAAAATCGAAACCCAGCACGATAGGGCACGATTCCCCGAATTTCCAAACATTGAACATTGCCTT
68426070 TGTTTTAAGG
Statistics
Matches: 169, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
127 60 0.36
128 109 0.64
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (127 bp):
CGAAAATCGAAACCCAGCACGATAGGGCACGATTCCCCGAATTTCCAAACATTGAACATTGCCTT
ACTTTAGAATTTAAAAAACACGAGGGAAATTCTAAAGGAATATTCAATTACTTTGAACAAAC
Found at i:68426765 original size:24 final size:24
Alignment explanation
Indices: 68426731--68426784 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
68426721 GGAAATAAGT
*
68426731 TATATACATAATAGATTTAAAAAACA
1 TATATATA-AATA-ATTTAAAAAACA
*
68426757 TATATATAAATAATTTAAACAAC-
1 TATATATAAATAATTTAAAAAACA
68426780 TATAT
1 TATAT
68426785 GAAAAAACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 5 0.19
24 10 0.38
25 4 0.15
26 7 0.27
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.35
Consensus pattern (24 bp):
TATATATAAATAATTTAAAAAACA
Found at i:68433309 original size:45 final size:45
Alignment explanation
Indices: 68433103--68433309 Score: 157
Period size: 45 Copynumber: 4.6 Consensus size: 45
68433093 GGATTGAAAC
* * * * * * *
68433103 CCCTAAAGTTGCTGAGGAGTAGATTAAAGTTA-TAGATCTTATCT
1 CCCTGAAGTTGCAGTGGAATAGATTAAAGATAGCAAATCTTATCT
* ** * *
68433147 CCCTGAAGTTGCAGTGGAGTAGATCGAAGATAGCAAACCTTATCC
1 CCCTGAAGTTGCAGTGGAATAGATTAAAGATAGCAAATCTTATCT
** * * * * * *
68433192 CCCTGAAGTTGCAGTGGGGTAGGTTGAAGTTA-CGAGTCCTATCT
1 CCCTGAAGTTGCAGTGGAATAGATTAAAGATAGCAAATCTTATCT
* * * * *
68433236 CCTTGAAGTTGTAGTGGAACAGACTAAAGATAGCAAATCTTATTT
1 CCCTGAAGTTGCAGTGGAATAGATTAAAGATAGCAAATCTTATCT
* *
68433281 CCCTGAAGTTACAATGGAATAGATTAAAG
1 CCCTGAAGTTGCAGTGGAATAGATTAAAG
68433310 CTACAAGTTA
Statistics
Matches: 123, Mismatches: 38, Indels: 3
0.75 0.23 0.02
Matches are distributed among these distances:
44 56 0.46
45 67 0.54
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (45 bp):
CCCTGAAGTTGCAGTGGAATAGATTAAAGATAGCAAATCTTATCT
Found at i:68433613 original size:31 final size:32
Alignment explanation
Indices: 68433577--68433648 Score: 101
Period size: 31 Copynumber: 2.3 Consensus size: 32
68433567 TTGCTGGTCC
68433577 AATTTGGTACATAAACTTGACA-ATTTTTCCT
1 AATTTGGTACATAAACTTGACACATTTTTCCT
* * * *
68433608 AATTTGGAACTTAAACTTGACACTTTTTTCTT
1 AATTTGGTACATAAACTTGACACATTTTTCCT
68433640 AATTTGGTA
1 AATTTGGTA
68433649 TTTCATCTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
31 20 0.57
32 15 0.43
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.44
Consensus pattern (32 bp):
AATTTGGTACATAAACTTGACACATTTTTCCT
Found at i:68446258 original size:14 final size:14
Alignment explanation
Indices: 68446239--68446266 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
68446229 ACAACAATAT
68446239 TCATATCAATTAAA
1 TCATATCAATTAAA
68446253 TCATATCAATTAAA
1 TCATATCAATTAAA
68446267 CTAACACTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (14 bp):
TCATATCAATTAAA
Found at i:68453333 original size:31 final size:31
Alignment explanation
Indices: 68453297--68453355 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
68453287 CTAATATAAG
* *
68453297 TTAGCTTGTGTGAGTAAC-CTTGATATAAATT
1 TTAGCTTGTGTAAGCAACTC-TGATATAAATT
68453328 TTAGCTTGTGTAAGCAACTCTGATATAA
1 TTAGCTTGTGTAAGCAACTCTGATATAA
68453356 TGTCAACTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 24 0.96
32 1 0.04
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.39
Consensus pattern (31 bp):
TTAGCTTGTGTAAGCAACTCTGATATAAATT
Found at i:68454858 original size:21 final size:21
Alignment explanation
Indices: 68454834--68454887 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
68454824 TATCCCCTCC
68454834 ACATGGGCGTGTGTAGCCTTT
1 ACATGGGCGTGTGTAGCCTTT
* *
68454855 ACATAGGCGTGTGTGGCCTTT
1 ACATGGGCGTGTGTAGCCTTT
68454876 ACATGGGCGTGT
1 ACATGGGCGTGT
68454888 AGACCCTCAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.15, C:0.19, G:0.35, T:0.31
Consensus pattern (21 bp):
ACATGGGCGTGTGTAGCCTTT
Found at i:68466744 original size:365 final size:364
Alignment explanation
Indices: 68466074--68466803 Score: 1451
Period size: 365 Copynumber: 2.0 Consensus size: 364
68466064 AATGTCTTTA
68466074 TGGTTAAACCTAGTTATTTCTCCACTTCTACATGAAAATCTTTGAATTTATCAAAGGTTTCACTC
1 TGGTTAAACCTAGTTATTTCTCCACTTCTACATGAAAATCTTTGAATTTATCAAAGGTTTCACTC
68466139 TTGTGGGGCATAAGGTATACATACCCATATCTGGAATAATCATCAATAAAAGTTACATAATATTC
66 TTGTGGGGCATAAGGTATACATACCCATATCTGGAATAATCATCAATAAAAGTTACATAATATTC
68466204 GTAACCACCTCTTGCACTGACGCTTATAGGGCCACATACACCAGTGTGCACAAGTTCTAGGAGTT
131 GTAACCACCTCTTGCACTGACGCTTATAGGGCCACATACACCAGTGTGCACAAGTTCTAGGAGTT
68466269 TTATTGCCCTCGTTCATTTTCCATTAAAATATTGTTTGGTCATCTTACCTTCCAAGCAAGATTCA
196 TTATTGCCCTCGTTCATTTTCCATTAAAATATTGTTTGGTCATCTTACCTTCCAAGCAAGATTCA
68466334 CATTGTGGAAGATAGATTTCTTTAAGTGAACTTAAGATGTCGTCTTTCACAAGTCTAGTGATTCT
261 CATTGTGGAAGATAGATTTCTTTAAGTGAACTTAAGATGTCGTCTTTCACAAGTCTAGTGATTCT
68466399 TTCAAATGCCAAAGGTAAGAATCATTAGAGTGGGAAGTTT
326 TTCAAATGCC-AAGGTAAGAATCATTAGAGTGGGAAGTTT
68466439 TGGTTAAACCTAGTTATTTCTCCACTTCTACATGAAAATCTTTGAATTTATCAAAGGTTTCACTC
1 TGGTTAAACCTAGTTATTTCTCCACTTCTACATGAAAATCTTTGAATTTATCAAAGGTTTCACTC
68466504 TTGTGGGGCATAAGGTATACATACCCATATCTGGAATAATCATCAATAAAAGTTACATAATATTC
66 TTGTGGGGCATAAGGTATACATACCCATATCTGGAATAATCATCAATAAAAGTTACATAATATTC
68466569 GTAACCACCTCTTGCACTGACGCTTATAGGGCCACATACACCAGTGTGCACAAGTTCTAGGAGTT
131 GTAACCACCTCTTGCACTGACGCTTATAGGGCCACATACACCAGTGTGCACAAGTTCTAGGAGTT
68466634 TTATTGCCCTCGTTCATTTTCCATTAAAATATTGTTTGGTCATCTTACCTTCCAAGCAAGATTCA
196 TTATTGCCCTCGTTCATTTTCCATTAAAATATTGTTTGGTCATCTTACCTTCCAAGCAAGATTCA
68466699 CATTGTGGAAGATAGATTTCTTTAAGTGAACTTAAGATGTCGTCTTTCACAAGTCTAGTGATTCT
261 CATTGTGGAAGATAGATTTCTTTAAGTGAACTTAAGATGTCGTCTTTCACAAGTCTAGTGATTCT
68466764 TTCAAATGCCAAGGTAAGAATCATTAGAGTGGGAAGTTT
326 TTCAAATGCCAAGGTAAGAATCATTAGAGTGGGAAGTTT
68466803 T
1 T
68466804 AAGTTTATTA
Statistics
Matches: 365, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
364 30 0.08
365 335 0.92
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (364 bp):
TGGTTAAACCTAGTTATTTCTCCACTTCTACATGAAAATCTTTGAATTTATCAAAGGTTTCACTC
TTGTGGGGCATAAGGTATACATACCCATATCTGGAATAATCATCAATAAAAGTTACATAATATTC
GTAACCACCTCTTGCACTGACGCTTATAGGGCCACATACACCAGTGTGCACAAGTTCTAGGAGTT
TTATTGCCCTCGTTCATTTTCCATTAAAATATTGTTTGGTCATCTTACCTTCCAAGCAAGATTCA
CATTGTGGAAGATAGATTTCTTTAAGTGAACTTAAGATGTCGTCTTTCACAAGTCTAGTGATTCT
TTCAAATGCCAAGGTAAGAATCATTAGAGTGGGAAGTTT
Found at i:68468644 original size:12 final size:12
Alignment explanation
Indices: 68468603--68468644 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
68468593 CTAAATATAG
68468603 ATGAATGAAATT
1 ATGAATGAAATT
*
68468615 ATCAAT-AAATT
1 ATGAATGAAATT
* *
68468626 TTGAATGATATT
1 ATGAATGAAATT
68468638 ATGAATG
1 ATGAATG
68468645 TTTATTTAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
11 9 0.38
12 15 0.62
ACGTcount: A:0.45, C:0.02, G:0.14, T:0.38
Consensus pattern (12 bp):
ATGAATGAAATT
Found at i:68474658 original size:94 final size:93
Alignment explanation
Indices: 68474474--68474709 Score: 280
Period size: 94 Copynumber: 2.5 Consensus size: 93
68474464 TGTTATAACT
* *
68474474 GAACTATGGTCTTACACATGTAACCCCATGTTTAATGTCATGGCAACTACCCTATGTTTACTATC
1 GAACTAAGGTCTTACACATGTAACCCCATGTTTAATGTCATGGAAACTACCCTATGTTTACTATC
* * * *
68474539 ACTACAGATTCTACATGTTACCATAGTC
66 ACGACAGACTCCACATGTTACCATAGCC
* * *
68474567 GAGA-TAAGG-CGTTACACAAGTAACCCCATGTTTAATGTCCTGGTAAACTA-CCTCGTGTTTAC
1 GA-ACTAAGGTC-TTACACATGTAACCCCATGTTTAATGTCATGG-AAACTACCCT-ATGTTTAC
* * **
68474629 TATCCCGCCAGACTCCACATGTTTTCATAGCC
62 TATCACGACAGACTCCACATGTTACCATAGCC
*
68474661 GAACTAAGGTCTTACACATGTAACCCCATGTTTAATGTCTTGGAGAACT
1 GAACTAAGGTCTTACACATGTAACCCCATGTTTAATGTCATGGA-AACT
68474710 CTCTTGATTT
Statistics
Matches: 121, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
92 1 0.01
93 41 0.34
94 78 0.64
95 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (93 bp):
GAACTAAGGTCTTACACATGTAACCCCATGTTTAATGTCATGGAAACTACCCTATGTTTACTATC
ACGACAGACTCCACATGTTACCATAGCC
Found at i:68483055 original size:21 final size:21
Alignment explanation
Indices: 68483026--68483066 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
68483016 TCATCTACAC
68483026 ACGGCCGTGTGCCTCCCTCAT
1 ACGGCCGTGTGCCTCCCTCAT
*
68483047 ACGGGCGTGTGCCTCCCTCA
1 ACGGCCGTGTGCCTCCCTCA
68483067 CATGAGCATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.10, C:0.41, G:0.27, T:0.22
Consensus pattern (21 bp):
ACGGCCGTGTGCCTCCCTCAT
Found at i:68485637 original size:40 final size:40
Alignment explanation
Indices: 68485582--68485663 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
68485572 CCAAGAGGTG
* *
68485582 TTACATTGTCAATTGGTCGTCTAAATCTAATAAGTTATTC
1 TTACATCGTCAATTGGTCGCCTAAATCTAATAAGTTATTC
*
68485622 TTACATCGTCAATTGGTTGCCTAAATCTAATAAGTTATTC
1 TTACATCGTCAATTGGTCGCCTAAATCTAATAAGTTATTC
68485662 TT
1 TT
68485664 CTCAATAGAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.43
Consensus pattern (40 bp):
TTACATCGTCAATTGGTCGCCTAAATCTAATAAGTTATTC
Found at i:68489502 original size:52 final size:52
Alignment explanation
Indices: 68489387--68489588 Score: 212
Period size: 52 Copynumber: 3.9 Consensus size: 52
68489377 ATATCATACC
* * * *
68489387 GATGCCATATCCCAGATATGGTCTTATAC-GGAGGCACATTATCAC-AT-CATACC
1 GATGCCATAGCCCAGCTATGGTCTTATACGGGA-ACACA-TATCACAATGC--ACT
* * * *
68489440 GATGCTATAGCCCAGCCATGGTCTTATATGGGAATACATATCACAATGCACT
1 GATGCCATAGCCCAGCTATGGTCTTATACGGGAACACATATCACAATGCACT
* **
68489492 GATGCCATAGCCTAGCTATGGTCTTATACGGGTGCACATATCACAATGCACT
1 GATGCCATAGCCCAGCTATGGTCTTATACGGGAACACATATCACAATGCACT
* * * *
68489544 AATGCCATAGCCCAACTATGGTCTTATACAGGCACACATATCACA
1 GATGCCATAGCCCAGCTATGGTCTTATACGGGAACACATATCACA
68489589 TCTATTCCTT
Statistics
Matches: 125, Mismatches: 21, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
52 92 0.74
53 29 0.23
54 4 0.03
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (52 bp):
GATGCCATAGCCCAGCTATGGTCTTATACGGGAACACATATCACAATGCACT
Found at i:68489583 original size:104 final size:103
Alignment explanation
Indices: 68489387--68489588 Score: 239
Period size: 104 Copynumber: 1.9 Consensus size: 103
68489377 ATATCATACC
* *
68489387 GATGCCATATCCCAGATATGGTCTTATACGGAGGCACATTATCACATCATACCGATGCTATAGCC
1 GATGCCATAGCCCAGATATGGTCTTATACGGAGGCACATTATCACATCATA-C-ATGCCATAGCC
* ** *
68489452 CAGCCATGGTCTTATATGGGAATACATATCACAATGCACT
64 CAACCATGGTCTTATACAGGAACACATATCACAATGCACT
* *
68489492 GATGCCATAGCCTAGCTATGGTCTTATACGG-GTGCACA-TATCACAATGCACTA-ATGCCATAG
1 GATGCCATAGCCCAGATATGGTCTTATACGGAG-GCACATTATCAC-AT-CA-TACATGCCATAG
* *
68489554 CCCAACTATGGTCTTATACAGGCACACATATCACA
62 CCCAACCATGGTCTTATACAGGAACACATATCACA
68489589 TCTATTCCTT
Statistics
Matches: 83, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
104 44 0.53
105 35 0.42
106 2 0.02
107 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (103 bp):
GATGCCATAGCCCAGATATGGTCTTATACGGAGGCACATTATCACATCATACATGCCATAGCCCA
ACCATGGTCTTATACAGGAACACATATCACAATGCACT
Found at i:68491762 original size:57 final size:57
Alignment explanation
Indices: 68491626--68491770 Score: 150
Period size: 57 Copynumber: 2.5 Consensus size: 57
68491616 TTACATAAAG
* * * * *
68491626 GATTTAGCCTGGACTAGTAATCCTGATATAAGCCCTCTTAAGCATATGTTATAGATAG
1 GATTTAGCCTGGACAAGTAATCCTGATATAAG-CCTCTTAAGCATATGTTAGAAACAA
* **
68491684 GATTTAGCCCGGACGGGTAATCCTGAT-TAAG-CTCTTATGAGCATATGTTAGAAACAA
1 GATTTAGCCTGGACAAGTAATCCTGATATAAGCCTCTTA--AGCATATGTTAGAAACAA
* * *
68491741 GATTTAGCTTGGACAAATAATCCTGTTATA
1 GATTTAGCCTGGACAAGTAATCCTGATATA
68491771 TAATCTGTGG
Statistics
Matches: 71, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
55 6 0.08
57 39 0.55
58 26 0.37
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.32
Consensus pattern (57 bp):
GATTTAGCCTGGACAAGTAATCCTGATATAAGCCTCTTAAGCATATGTTAGAAACAA
Found at i:68500687 original size:15 final size:14
Alignment explanation
Indices: 68500669--68500699 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
68500659 TTAATTTATT
68500669 TAATAATAATGCTAA
1 TAATAATAAT-CTAA
68500684 TAATAATAATCTAA
1 TAATAATAATCTAA
68500698 TA
1 TA
68500700 TAAAACCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (14 bp):
TAATAATAATCTAA
Found at i:68500710 original size:21 final size:20
Alignment explanation
Indices: 68500686--68500754 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
68500676 AATGCTAATA
68500686 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAACC
* **
68500707 ATAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AACC
68500726 ATAATAATTTAATATAAAACC
1 ATAATAA-TTAATATAAAACC
68500747 ATAATAAT
1 ATAATAAT
68500755 AATCATTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 2 0.05
21 19 0.50
22 3 0.08
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:68518924 original size:26 final size:26
Alignment explanation
Indices: 68518895--68519002 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
68518885 TGGTACAAAT
*
68518895 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
68518921 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
68518947 TGATAATGGGTTAGGTAAATATTCCG
1 TGATAATGGGTTAGGTAAATATTCCA
* *
68518973 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
68518999 TGAT
1 TGAT
68519003 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:68520763 original size:22 final size:22
Alignment explanation
Indices: 68520735--68520788 Score: 108
Period size: 22 Copynumber: 2.5 Consensus size: 22
68520725 ATTCTCCACA
68520735 TGGAGTGTAGGGCTGGTACGGG
1 TGGAGTGTAGGGCTGGTACGGG
68520757 TGGAGTGTAGGGCTGGTACGGG
1 TGGAGTGTAGGGCTGGTACGGG
68520779 TGGAGTGTAG
1 TGGAGTGTAG
68520789 TGGTTGGTGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.15, C:0.07, G:0.54, T:0.24
Consensus pattern (22 bp):
TGGAGTGTAGGGCTGGTACGGG
Found at i:68521762 original size:21 final size:20
Alignment explanation
Indices: 68521738--68521776 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
68521728 TATTGAAACT
*
68521738 AAAACTAATACTAATAATAGC
1 AAAACTAATA-AAATAATAGC
68521759 AAAACTAATAAAATAATA
1 AAAACTAATAAAATAATA
68521777 TAGTACAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.64, C:0.10, G:0.03, T:0.23
Consensus pattern (20 bp):
AAAACTAATAAAATAATAGC
Found at i:68521847 original size:24 final size:26
Alignment explanation
Indices: 68521820--68521867 Score: 66
Period size: 24 Copynumber: 1.9 Consensus size: 26
68521810 TATGAATACG
68521820 TACAT-ATAATATA-ATAT-TAAAATA
1 TACATAAT-ATATACATATATAAAATA
68521844 TACATAATATATACATATATAAAA
1 TACATAATATATACATATATAAAA
68521868 CATGTATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 10 0.48
25 6 0.29
26 5 0.24
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (26 bp):
TACATAATATATACATATATAAAATA
Found at i:68522318 original size:3 final size:3
Alignment explanation
Indices: 68522310--68522336 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
68522300 ACATTAGAAG
68522310 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
68522337 ATTAAAGTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:68525366 original size:18 final size:18
Alignment explanation
Indices: 68525338--68525381 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
68525328 AGTAAAATTT
*
68525338 ATATGAAAATCCCTGAAGG
1 ATAT-AAAATCCCAGAAGG
* *
68525357 ATTTAAAATCTCAGAAGG
1 ATATAAAATCCCAGAAGG
68525375 ATATAAA
1 ATATAAA
68525382 GTTTATCGGG
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 18 0.86
19 3 0.14
ACGTcount: A:0.48, C:0.11, G:0.16, T:0.25
Consensus pattern (18 bp):
ATATAAAATCCCAGAAGG
Found at i:68532917 original size:21 final size:24
Alignment explanation
Indices: 68532893--68532936 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
68532883 CGGCCTGAAC
68532893 CACA-CGG-GTGT-GTCCCTGTAG
1 CACATCGGCGTGTGGTCCCTGTAG
*
68532914 CACATGGGCGTGTGGTCCCTGTA
1 CACATCGGCGTGTGGTCCCTGTA
68532937 ATAGAGATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 4 0.21
22 2 0.11
23 4 0.21
24 9 0.47
ACGTcount: A:0.14, C:0.27, G:0.34, T:0.25
Consensus pattern (24 bp):
CACATCGGCGTGTGGTCCCTGTAG
Found at i:68549930 original size:177 final size:178
Alignment explanation
Indices: 68549632--68550052 Score: 638
Period size: 177 Copynumber: 2.4 Consensus size: 178
68549622 AGGTTGGCGA
* * * *
68549632 TAGCAAGGAAACAAACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGA-TCAAA
1 TAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCACTAGTGGAGCAGATTCAAA
68549696 GATGGCGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAGTCCCTAAGCCTTATCTCTC
66 GATGGCGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAGTCCCTAAGCCTTATCTCTC
*
68549761 TGAGGTAGTAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGG
131 TGAGGTAGCAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGG
* **
68549809 TAGCAAGGAAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAGCACTAGTGGAGCAGATTGGAA
1 TAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCACTAGTGGAGCAGATTCAAA
*
68549874 GA-GGCGAATCTTATCTCCATGTATC-GACAATGGAGCAGATTTAAG-CCTTCAAGCCTTATCTC
66 GATGGCGAATCTTATCTCCATGTATCAG-CAATGGAGCAGATTTAAGTCCCT-AAGCCTTATCTC
68549936 TCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGG
129 TCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGG
* * * * *
68549986 TAGCAAGGAAGCAGATTGATGATTGTAGATCTTATCTCTCTAAGGTAGC-AGTGGAGCAGA-TCA
1 TAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAA-GCA-CTAGTGGAGCAGATTCA
68550049 AAGA
64 AAGA
68550053 CGATGAATTC
Statistics
Matches: 222, Mismatches: 17, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
176 4 0.02
177 199 0.90
178 18 0.08
179 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (178 bp):
TAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCACTAGTGGAGCAGATTCAAA
GATGGCGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAGTCCCTAAGCCTTATCTCTC
TGAGGTAGCAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGG
Found at i:68550034 original size:45 final size:43
Alignment explanation
Indices: 68549751--68550035 Score: 167
Period size: 43 Copynumber: 6.5 Consensus size: 43
68549741 GTCCCTAAGC
* *
68549751 CTTATCTCTCTGAGGTAGTAAGAGAGCAGGTTGAAGATTGAGT
1 CTTATCTCTCTGAGGTAGCAAGAGAGCAGATTGAAGATTGAGT
* *
68549794 CTTATCT-TCCTGAGGTAGCAAG-GAAGCAGACTAAAGATTGAAGAT
1 CTTATCTCT-CTGAGGTAGCAAGAG-AGCAGATTGAAGATTG-AG-T
* * * * * ** *
68549839 CTTATCTCCCT-AAGCA-CTAGTGGAGCAGATTGGAAGAGGCGAAT
1 CTTATCTCTCTGAGGTAGCAAG-AGAGCAGATT-GAAGA-TTGAGT
* * * * *
68549883 CTTATCTC-CATGTA--TCGACAATG-GAGCAGATTTAAGCCTTCAAGC
1 CTTATCTCTC-TG-AGGTAG-CAA-GAGAGCAGATTGAAG-ATT-GAGT
*
68549928 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAGT
1 CTTATCTCTCTGAGGTAGCAAGAGAGCAGATTGAAGATTGAGT
*
68549971 CTTATCT-TCCTGAGGTAGCAAG-GAAGCAGATTGATGATTGTAGAT
1 CTTATCTCT-CTGAGGTAGCAAGAG-AGCAGATTGAAGATTG-AG-T
*
68550016 CTTATCTCTCTAAGGTAGCA
1 CTTATCTCTCTGAGGTAGCA
68550036 GTGGAGCAGA
Statistics
Matches: 184, Mismatches: 32, Indels: 50
0.69 0.12 0.19
Matches are distributed among these distances:
42 4 0.02
43 72 0.39
44 31 0.17
45 68 0.37
46 8 0.04
47 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.28
Consensus pattern (43 bp):
CTTATCTCTCTGAGGTAGCAAGAGAGCAGATTGAAGATTGAGT
Found at i:68550044 original size:45 final size:43
Alignment explanation
Indices: 68549751--68550046 Score: 185
Period size: 45 Copynumber: 6.7 Consensus size: 43
68549741 GTCCCTAAGC
* * *
68549751 CTTATCTCTCTGAGGTAGTAAGAGAGCAGGTTGAAGATTGAGT
1 CTTATCTCTCTGAGGTAGCAAGGGAGCAGATTGAAGATTGAGT
* * *
68549794 CTTATCT-TCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGAAGAT
1 CTTATCTCT-CTGAGGTAGCAAGGGAGCAGATTGAAGATTG-AG-T
* * * * ** *
68549839 CTTATCTCCCT-AAGCA-CTAGTGGAGCAGATTGGAAGAGGCGAAT
1 CTTATCTCTCTGAGGTAGCAAG-GGAGCAGATT-GAAGA-TTGAGT
* * * * * *
68549883 CTTATCTC-CATGTA--TCGACAATGGAGCAGATTTAAGCCTTCAAGC
1 CTTATCTCTC-TG-AGGTAG-CAAGGGAGCAGATTGAAG-ATT-GAGT
* *
68549928 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAGT
1 CTTATCTCTCTGAGGTAGCAAGGGAGCAGATTGAAGATTGAGT
* *
68549971 CTTATCT-TCCTGAGGTAGCAAGGAAGCAGATTGATGATTGTAGAT
1 CTTATCTCT-CTGAGGTAGCAAGGGAGCAGATTGAAGATTG-AG-T
*
68550016 CTTATCTCTCTAAGGTAGC-AGTGGAGCAGAT
1 CTTATCTCTCTGAGGTAGCAAG-GGAGCAGAT
68550047 CAAAGACGAT
Statistics
Matches: 190, Mismatches: 41, Indels: 42
0.70 0.15 0.15
Matches are distributed among these distances:
42 2 0.01
43 72 0.38
44 33 0.17
45 75 0.39
46 8 0.04
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (43 bp):
CTTATCTCTCTGAGGTAGCAAGGGAGCAGATTGAAGATTGAGT
Found at i:68555926 original size:10 final size:10
Alignment explanation
Indices: 68555911--68555973 Score: 72
Period size: 10 Copynumber: 5.9 Consensus size: 10
68555901 TGATACTTTA
68555911 TAAAATTAAT
1 TAAAATTAAT
*
68555921 TAAAATTCAT
1 TAAAATTAAT
*
68555931 CAAAATTAAT
1 TAAAATTAAT
68555941 TATAAAGTTAATT
1 TA-AAA-TTAA-T
68555954 ATAAAATTAAT
1 -TAAAATTAAT
68555965 TAAAATTAA
1 TAAAATTAA
68555974 ACATTTTCAT
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
10 27 0.60
11 4 0.09
12 8 0.18
13 4 0.09
14 2 0.04
ACGTcount: A:0.57, C:0.03, G:0.02, T:0.38
Consensus pattern (10 bp):
TAAAATTAAT
Found at i:68578430 original size:47 final size:47
Alignment explanation
Indices: 68578373--68578725 Score: 589
Period size: 47 Copynumber: 7.4 Consensus size: 47
68578363 ATTGATGTAC
* * * * *
68578373 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
68578420 AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
68578469 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
68578516 AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
68578565 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
68578612 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
* * *
68578659 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
68578706 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
68578726 TCCCGAAGGG
Statistics
Matches: 293, Mismatches: 9, Indels: 8
0.95 0.03 0.03
Matches are distributed among these distances:
47 203 0.69
49 90 0.31
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
Found at i:68578541 original size:96 final size:96
Alignment explanation
Indices: 68578373--68578725 Score: 606
Period size: 96 Copynumber: 3.7 Consensus size: 96
68578363 ATTGATGTAC
* * *
68578373 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGA
68578438 TAAGGCCTAATGGCCGATGTGATGAATGTGA
66 TAAGGCCTAATGGCCGATGTGATGAATGTGA
* *
68578469 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGA
68578534 TAAGGCCTAATGGCCGATGTGATGAATGTGA
66 TAAGGCCTAATGGCCGATGTGATGAATGTGA
* *
68578565 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGA
68578628 TAAGGCCTAATGGCCGATGTGATGAATGTGA
66 TAAGGCCTAATGGCCGATGTGATGAATGTGA
*
68578659 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGA
68578722 TAAG
66 TAAG
68578726 TCCCGAAGGG
Statistics
Matches: 247, Mismatches: 8, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
94 101 0.41
95 1 0.00
96 145 0.59
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGA
TAAGGCCTAATGGCCGATGTGATGAATGTGA
Found at i:68584149 original size:28 final size:28
Alignment explanation
Indices: 68584117--68584243 Score: 191
Period size: 28 Copynumber: 4.5 Consensus size: 28
68584107 TGATTTTCGA
68584117 CACTAAGTGTGCGAGTTTAATTATAAAG
1 CACTAAGTGTGCGAGTTTAATTATAAAG
* *
68584145 CACTAAGTGTGCGAGTTTAATTGTAGAG
1 CACTAAGTGTGCGAGTTTAATTATAAAG
**
68584173 CACTAAGTGTGCGAGTTTAATGGTAAAG
1 CACTAAGTGTGCGAGTTTAATTATAAAG
* **
68584201 CACTAAGTGTGCGAGTTTGATTATTGAG
1 CACTAAGTGTGCGAGTTTAATTATAAAG
68584229 CACTAAGTGTGCGAG
1 CACTAAGTGTGCGAG
68584244 CTTATTAAAT
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 90 1.00
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.31
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTAATTATAAAG
Found at i:68585042 original size:23 final size:23
Alignment explanation
Indices: 68584964--68585267 Score: 228
Period size: 23 Copynumber: 13.0 Consensus size: 23
68584954 TTGTTATGCT
*
68584964 TAAATGCTG-CACAATTGT-TATA
1 TAAATGCTGTCA-AATTTTGTATA
** * * *
68584986 TGTATGCTGCCCAATTTTGATAAA
1 TAAATGCTGTCAAATTTTG-TATA
*
68585010 TCAATGCTGTCAAATTTTGTATA
1 TAAATGCTGTCAAATTTTGTATA
* * *
68585033 TACATGCTGTTAAATTTTGTGTA
1 TAAATGCTGTCAAATTTTGTATA
*
68585056 TAAATGCTGTCCAAATTTGTGTATG
1 TAAATGCTGT-CAAATTT-TGTATA
*
68585081 T--ATGCTGCCAAATTTTGGGTGA-A
1 TAAATGCTGTCAAATTTT--GT-ATA
*
68585104 TAAATGCTGTCCAATTTTGTATA
1 TAAATGCTGTCAAATTTTGTATA
* * *
68585127 TACATGCTGTTAAATTTTGTGTA
1 TAAATGCTGTCAAATTTTGTATA
*
68585150 TAAATGCTGTCCAAATTTGTGTATG
1 TAAATGCTGT-CAAATTT-TGTATA
*
68585175 T--ATGCTGCCAAATTTTGGGTGA-A
1 TAAATGCTGTCAAATTTT--GT-ATA
*
68585198 TAAATGCTGTCCAATTTTGTATA
1 TAAATGCTGTCAAATTTTGTATA
* * *
68585221 TACATGCTGTTAAATTTTGTGTA
1 TAAATGCTGTCAAATTTTGTATA
68585244 TAAATGCTGTCCAAATTTGTGTAT
1 TAAATGCTGT-CAAATTT-TGTAT
68585268 GTATGCTGCC
Statistics
Matches: 220, Mismatches: 41, Indels: 39
0.73 0.14 0.13
Matches are distributed among these distances:
21 2 0.01
22 28 0.13
23 112 0.51
24 38 0.17
25 40 0.18
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.41
Consensus pattern (23 bp):
TAAATGCTGTCAAATTTTGTATA
Found at i:68585063 original size:46 final size:47
Alignment explanation
Indices: 68584964--68585319 Score: 320
Period size: 46 Copynumber: 7.6 Consensus size: 47
68584954 TTGTTATGCT
* ** * * *
68584964 TAAATGCTG-CACAATTGT-TATATGTATGCTGCCCAATTTTGATAAA
1 TAAATGCTGTCA-AATTTTGTATATACATGCTGCCAAATTTTGGTGAA
* ** *
68585010 TCAATGCTGTCAAATTTTGTATATACATGCTGTTAAATTTT-GTGTA
1 TAAATGCTGTCAAATTTTGTATATACATGCTGCCAAATTTTGGTGAA
*
68585056 TAAATGCTGTCCAAATTTGTGTATGT--ATGCTGCCAAATTTTGGGTGAA
1 TAAATGCTGT-CAAATTT-TGTATATACATGCTGCCAAATTTT-GGTGAA
* ** *
68585104 TAAATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTT-GTGTA
1 TAAATGCTGTCAAATTTTGTATATACATGCTGCCAAATTTTGGTGAA
*
68585150 TAAATGCTGTCCAAATTTGTGTATGT--ATGCTGCCAAATTTTGGGTGAA
1 TAAATGCTGT-CAAATTT-TGTATATACATGCTGCCAAATTTT-GGTGAA
* ** *
68585198 TAAATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTT-GTGTA
1 TAAATGCTGTCAAATTTTGTATATACATGCTGCCAAATTTTGGTGAA
* *
68585244 TAAATGCTGTCCAAATTTGTGTATGT--ATGCTGCCCAATTTTGGTGAA
1 TAAATGCTGT-CAAATTT-TGTATATACATGCTGCCAAATTTTGGTGAA
** * *
68585291 GCAATGCTGTAAAATTTTGTACATACATG
1 TAAATGCTGTCAAATTTTGTATATACATG
68585320 ATATGGATGA
Statistics
Matches: 250, Mismatches: 41, Indels: 37
0.76 0.12 0.11
Matches are distributed among these distances:
45 5 0.02
46 108 0.43
47 65 0.26
48 72 0.29
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.40
Consensus pattern (47 bp):
TAAATGCTGTCAAATTTTGTATATACATGCTGCCAAATTTTGGTGAA
Found at i:68585126 original size:94 final size:93
Alignment explanation
Indices: 68584984--68585319 Score: 555
Period size: 94 Copynumber: 3.6 Consensus size: 93
68584974 ACAATTGTTA
* * * *
68584984 TATGTATGCTGCCCAATTTTGATAAATCAATGCTGTCAAATTTTGTATATACATGCTGTTAAATT
1 TATGTATGCTGCCAAATTTTGGTGAATAAATGCTGTCAAATTTTGTATATACATGCTGTTAAATT
68585049 TTGTGTATAAATGCTGTCCAAATTTGTG
66 TTGTGTATAAATGCTGTCCAAATTTGTG
*
68585077 TATGTATGCTGCCAAATTTTGGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTTAAAT
1 TATGTATGCTGCCAAATTTT-GGTGAATAAATGCTGTCAAATTTTGTATATACATGCTGTTAAAT
68585142 TTTGTGTATAAATGCTGTCCAAATTTGTG
65 TTTGTGTATAAATGCTGTCCAAATTTGTG
*
68585171 TATGTATGCTGCCAAATTTTGGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTTAAAT
1 TATGTATGCTGCCAAATTTT-GGTGAATAAATGCTGTCAAATTTTGTATATACATGCTGTTAAAT
68585236 TTTGTGTATAAATGCTGTCCAAATTTGTG
65 TTTGTGTATAAATGCTGTCCAAATTTGTG
* ** * *
68585265 TATGTATGCTGCCCAATTTTGGTGAAGCAATGCTGTAAAATTTTGTACATACATG
1 TATGTATGCTGCCAAATTTTGGTGAATAAATGCTGTCAAATTTTGTATATACATG
68585320 ATATGGATGA
Statistics
Matches: 231, Mismatches: 11, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
93 49 0.21
94 182 0.79
ACGTcount: A:0.28, C:0.12, G:0.18, T:0.41
Consensus pattern (93 bp):
TATGTATGCTGCCAAATTTTGGTGAATAAATGCTGTCAAATTTTGTATATACATGCTGTTAAATT
TTGTGTATAAATGCTGTCCAAATTTGTG
Found at i:68585273 original size:23 final size:23
Alignment explanation
Indices: 68585012--68585285 Score: 229
Period size: 23 Copynumber: 11.7 Consensus size: 23
68585002 TTGATAAATC
68585012 AATGCTGT-CAAATTT-TGTATA
1 AATGCTGTCCAAATTTGTGTATA
*
68585033 TACATGCTGT-TAAATTTTGTGTATA
1 -A-ATGCTGTCCAAA-TTTGTGTATA
*
68585058 AATGCTGTCCAAATTTGTGTATG
1 AATGCTGTCCAAATTTGTGTATA
* *
68585081 TATGCTG-CCAAATTTTGGGTGAATA
1 AATGCTGTCCAAA-TTT--GTGTATA
* *
68585106 AATGCTGTCCAATTTTGTATATA
1 AATGCTGTCCAAATTTGTGTATA
* *
68585129 CATGCTGT-TAAATTTTGTGTATA
1 AATGCTGTCCAAA-TTTGTGTATA
*
68585152 AATGCTGTCCAAATTTGTGTATG
1 AATGCTGTCCAAATTTGTGTATA
* *
68585175 TATGCTG-CCAAATTTTGGGTGAATA
1 AATGCTGTCCAAA-TTT--GTGTATA
* *
68585200 AATGCTGTCCAATTTTGTATATA
1 AATGCTGTCCAAATTTGTGTATA
* *
68585223 CATGCTGT-TAAATTTTGTGTATA
1 AATGCTGTCCAAA-TTTGTGTATA
*
68585246 AATGCTGTCCAAATTTGTGTATG
1 AATGCTGTCCAAATTTGTGTATA
* * *
68585269 TATGCTGCCCAATTTTG
1 AATGCTGTCCAAATTTG
68585286 GTGAAGCAAT
Statistics
Matches: 202, Mismatches: 34, Indels: 31
0.76 0.13 0.12
Matches are distributed among these distances:
22 15 0.07
23 132 0.65
24 13 0.06
25 34 0.17
26 8 0.04
ACGTcount: A:0.27, C:0.12, G:0.19, T:0.42
Consensus pattern (23 bp):
AATGCTGTCCAAATTTGTGTATA
Found at i:68594154 original size:23 final size:23
Alignment explanation
Indices: 68594117--68594174 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
68594107 AATTCTAGTC
* *
68594117 CATTTAGGCACTAAAACGTACCA
1 CATTTAGCCATTAAAACGTACCA
68594140 CATTTAGCCATTAAAACGTACCA
1 CATTTAGCCATTAAAACGTACCA
68594163 CATTTAGCCATT
1 CATTTAGCCATT
68594175 TCCAAAACAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.28
Consensus pattern (23 bp):
CATTTAGCCATTAAAACGTACCA
Found at i:68597250 original size:29 final size:29
Alignment explanation
Indices: 68597213--68597274 Score: 115
Period size: 29 Copynumber: 2.1 Consensus size: 29
68597203 AATTTCCATT
*
68597213 AACATACAAAATACGAATACACTATTCCA
1 AACATACAAAATACGAATACAATATTCCA
68597242 AACATACAAAATACGAATACAATATTCCA
1 AACATACAAAATACGAATACAATATTCCA
68597271 AACA
1 AACA
68597275 CACATGTTAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.55, C:0.23, G:0.03, T:0.19
Consensus pattern (29 bp):
AACATACAAAATACGAATACAATATTCCA
Found at i:68598304 original size:22 final size:22
Alignment explanation
Indices: 68598278--68598321 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
68598268 CCCTAAAGAG
68598278 AACGACAATCGACAACGAGTTT
1 AACGACAATCGACAACGAGTTT
68598300 AACGACAATCGACAACGAGTTT
1 AACGACAATCGACAACGAGTTT
68598322 GGCGAAGAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.23, G:0.18, T:0.18
Consensus pattern (22 bp):
AACGACAATCGACAACGAGTTT
Found at i:68600047 original size:26 final size:26
Alignment explanation
Indices: 68599986--68600049 Score: 103
Period size: 26 Copynumber: 2.5 Consensus size: 26
68599976 CTTTTATACA
*
68599986 TTATTTTAAATTGTCTTTTATGTTAT
1 TTATTTTAATTTGTCTTTTATGTTAT
68600012 TTATTTTAATTTG-CTTTGTATGTTAT
1 TTATTTTAATTTGTCTTT-TATGTTAT
68600038 TTATTTTAATTT
1 TTATTTTAATTT
68600050 CTATGTTATT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
25 4 0.11
26 32 0.89
ACGTcount: A:0.22, C:0.03, G:0.08, T:0.67
Consensus pattern (26 bp):
TTATTTTAATTTGTCTTTTATGTTAT
Found at i:68600054 original size:21 final size:23
Alignment explanation
Indices: 68600003--68600059 Score: 73
Period size: 26 Copynumber: 2.4 Consensus size: 23
68599993 AAATTGTCTT
68600003 TTATGTTATTTATTTTAATTTGC
1 TTATGTTATTTATTTTAATTTGC
68600026 TTTGTATGTTATTTATTTTAATTT-C
1 --T-TATGTTATTTATTTTAATTTGC
68600051 -TATGTTATT
1 TTATGTTATT
68600060 GTTTTATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
21 9 0.29
25 2 0.06
26 20 0.65
ACGTcount: A:0.21, C:0.04, G:0.09, T:0.67
Consensus pattern (23 bp):
TTATGTTATTTATTTTAATTTGC
Found at i:68605499 original size:17 final size:17
Alignment explanation
Indices: 68605479--68605522 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
68605469 TTCATAAACA
68605479 TATATCATTCATTTCAT-
1 TATATCATT-ATTTCATG
*
68605496 TATATCAATATTTCATG
1 TATATCATTATTTCATG
68605513 TATCATCATT
1 TAT-ATCATT
68605523 TTTATGAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 7 0.30
17 11 0.48
18 5 0.22
ACGTcount: A:0.32, C:0.16, G:0.02, T:0.50
Consensus pattern (17 bp):
TATATCATTATTTCATG
Found at i:68616777 original size:41 final size:41
Alignment explanation
Indices: 68616720--68616809 Score: 171
Period size: 41 Copynumber: 2.2 Consensus size: 41
68616710 AAATACATCA
*
68616720 TTTTCATTTGTTATCCTTTTCGGATAACATCCTTTTCAACC
1 TTTTCATTTGATATCCTTTTCGGATAACATCCTTTTCAACC
68616761 TTTTCATTTGATATCCTTTTCGGATAACATCCTTTTCAACC
1 TTTTCATTTGATATCCTTTTCGGATAACATCCTTTTCAACC
68616802 TTTTCATT
1 TTTTCATT
68616810 AATTCAGAAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.20, C:0.23, G:0.07, T:0.50
Consensus pattern (41 bp):
TTTTCATTTGATATCCTTTTCGGATAACATCCTTTTCAACC
Found at i:68621088 original size:41 final size:41
Alignment explanation
Indices: 68621043--68621529 Score: 413
Period size: 41 Copynumber: 11.9 Consensus size: 41
68621033 AGCCTATTAA
* * *
68621043 GCTCAAAGCCTGATATAACACACTGACACGATGCCTGCTAG
1 GCTCAAAGCCTGATATAATACACTGACATGAAGCCTGCTAG
* * * *
68621084 GCTCAAAGCCTGATATAACACACAGATATGAAGCCTTCTAG
1 GCTCAAAGCCTGATATAATACACTGACATGAAGCCTGCTAG
* * * * *
68621125 GCACAAAGCTTAATATAATACACTGGCATAAAGCCTGCTAG
1 GCTCAAAGCCTGATATAATACACTGACATGAAGCCTGCTAG
*
68621166 GCACAAAGCCTGATATAATACACTGACATGAAGCCTGCTAG
1 GCTCAAAGCCTGATATAATACACTGACATGAAGCCTGCTAG
* *
68621207 G-TACAAAGCCTG--ATAATACACTGACTTGAAGCCTACTAG
1 GCT-CAAAGCCTGATATAATACACTGACATGAAGCCTGCTAG
* * * * *
68621246 GCAT-AAATCTTGATATAATACA-TAAGCATAAAGTCTGCTAG
1 GC-TCAAAGCCTGATATAATACACTGA-CATGAAGCCTGCTAG
* * *
68621287 GCACAAAGCCTGATATAATACA-TCGGCATGAAGCTTGCTAG
1 GCTCAAAGCCTGATATAATACACT-GACATGAAGCCTGCTAG
* * * *
68621328 GCACAAAGCTTGATATAATACAC-CAGCATGAAGCCTGGTAG
1 GCTCAAAGCCTGATATAATACACTGA-CATGAAGCCTGCTAG
* *
68621369 GCAT-AAAGCCTGATATAATACACT-AGCACGAATCCTGCTAG
1 GC-TCAAAGCCTGATATAATACACTGA-CATGAAGCCTGCTAG
* * * * *
68621410 GCACAAAGCCTGATATAATACATTGGCACGAAGCCTACTAG
1 GCTCAAAGCCTGATATAATACACTGACATGAAGCCTGCTAG
* * ** * *
68621451 GCAT-AAAGCTTGATATAATACTCCAACACGAAG-CTCGTTAG
1 GC-TCAAAGCCTGATATAATACACTGACATGAAGCCT-GCTAG
* * *
68621492 GCACAAAGCTTGATATAATACAAC-GGCATGAAGCCTGC
1 GCTCAAAGCCTGATATAATAC-ACTGACATGAAGCCTGC
68621530 AGGACTTAGT
Statistics
Matches: 361, Mismatches: 66, Indels: 38
0.78 0.14 0.08
Matches are distributed among these distances:
39 32 0.09
40 4 0.01
41 322 0.89
42 3 0.01
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.22
Consensus pattern (41 bp):
GCTCAAAGCCTGATATAATACACTGACATGAAGCCTGCTAG
Found at i:68621173 original size:82 final size:82
Alignment explanation
Indices: 68621046--68621529 Score: 478
Period size: 82 Copynumber: 5.9 Consensus size: 82
68621036 CTATTAAGCT
* * * * * * *
68621046 CAAAGCCTGATATAACACACTGACACGATGCCTGCTAGGCTCAAAGCCTGATATAACACACAGAT
1 CAAAGCCTGATATAATACACTGGCATGAAGCCTGCTAGGCACAAAGCCTGATATAATACACAGAC
*
68621111 ATGAAGCCTTCTAGGCA
66 ATGAAGCCTGCTAGGCA
* * * *
68621128 CAAAGCTTAATATAATACACTGGCATAAAGCCTGCTAGGCACAAAGCCTGATATAATACACTGAC
1 CAAAGCCTGATATAATACACTGGCATGAAGCCTGCTAGGCACAAAGCCTGATATAATACACAGAC
*
68621193 ATGAAGCCTGCTAGGTA
66 ATGAAGCCTGCTAGGCA
* * * * * * *
68621210 CAAAGCCTG--ATAATACACTGACTTGAAGCCTACTAGGCATAAATCTTGATATAATACATA-AG
1 CAAAGCCTGATATAATACACTGGCATGAAGCCTGCTAGGCACAAAGCCTGATATAATACACAGA-
* *
68621272 CATAAAGTCTGCTAGGCA
65 CATGAAGCCTGCTAGGCA
* *
68621290 CAAAGCCTGATATAATACA-TCGGCATGAAGCTTGCTAGGCACAAAGCTTGATATAATACACCAG
1 CAAAGCCTGATATAATACACT-GGCATGAAGCCTGCTAGGCACAAAGCCTGATATAATACA-CAG
*
68621354 -CATGAAGCCTGGTAGGCA
64 ACATGAAGCCTGCTAGGCA
* * * * ** *
68621372 TAAAGCCTGATATAATACACTAGCACGAATCCTGCTAGGCACAAAGCCTGATATAATACATTGGC
1 CAAAGCCTGATATAATACACTGGCATGAAGCCTGCTAGGCACAAAGCCTGATATAATACACAGAC
* *
68621437 ACGAAGCCTACTAGGCA
66 ATGAAGCCTGCTAGGCA
* * * *** * * *
68621454 TAAAGCTTGATATAATACTCCAACACGAAG-CTCGTTAGGCACAAAGCTTGATATAATACA-ACG
1 CAAAGCCTGATATAATACACTGGCATGAAGCCT-GCTAGGCACAAAGCCTGATATAATACACA-G
*
68621517 GCATGAAGCCTGC
64 ACATGAAGCCTGC
68621530 AGGACTTAGT
Statistics
Matches: 334, Mismatches: 58, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
79 1 0.00
80 66 0.20
81 4 0.01
82 261 0.78
83 2 0.01
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.22
Consensus pattern (82 bp):
CAAAGCCTGATATAATACACTGGCATGAAGCCTGCTAGGCACAAAGCCTGATATAATACACAGAC
ATGAAGCCTGCTAGGCA
Found at i:68621419 original size:123 final size:123
Alignment explanation
Indices: 68621019--68621513 Score: 545
Period size: 123 Copynumber: 4.0 Consensus size: 123
68621009 AACTTACCTG
** * * * *
68621019 ATACACTAGCACAAAGCCTATTAAGCTCAAAGCCTGATATAACACACTGACACGATGCCTGCTAG
1 ATACACTAGCACAAAGCCTGCTAGGCACAAAGCCTGATATAATACACTGACACGAAGCCTGCTAG
* * * * *
68621084 GCTCAAAGCCTGATATAACACACAGATATGAAGCCTTCTAGGCACAAAGCTTAATATA
66 GCACAAAGCCTGATATAATACACAGACATGAAGCCTGCTAGGCACAAAGCTTGATATA
* * *
68621142 ATACACTGGCATAAAGCCTGCTAGGCACAAAGCCTGATATAATACACTGACATGAAGCCTGCTAG
1 ATACACTAGCACAAAGCCTGCTAGGCACAAAGCCTGATATAATACACTGACACGAAGCCTGCTAG
* * * * * *
68621207 GTACAAAGCCTG--ATAATACACTGACTTGAAGCCTACTAGGCATAAATCTTGATATA
66 GCACAAAGCCTGATATAATACACAGACATGAAGCCTGCTAGGCACAAAGCTTGATATA
* * * * *
68621263 ATACA-TAAGCATAAAGTCTGCTAGGCACAAAGCCTGATATAATACA-TCGGCATGAAGCTTGCT
1 ATACACT-AGCACAAAGCCTGCTAGGCACAAAGCCTGATATAATACACT-GACACGAAGCCTGCT
* * * *
68621326 AGGCACAAAGCTTGATATAATACACCAG-CATGAAGCCTGGTAGGCATAAAGCCTGATATA
64 AGGCACAAAGCCTGATATAATACA-CAGACATGAAGCCTGCTAGGCACAAAGCTTGATATA
* * * * *
68621386 ATACACTAGCACGAATCCTGCTAGGCACAAAGCCTGATATAATACATTGGCACGAAGCCTACTAG
1 ATACACTAGCACAAAGCCTGCTAGGCACAAAGCCTGATATAATACACTGACACGAAGCCTGCTAG
* * * * *
68621451 GCATAAAGCTTGATATAATACTCCA-ACACGAAG-CTCGTTAGGCACAAAGCTTGATATA
66 GCACAAAGCCTGATATAATAC-ACAGACATGAAGCCT-GCTAGGCACAAAGCTTGATATA
68621509 ATACA
1 ATACA
68621514 ACGGCATGAA
Statistics
Matches: 318, Mismatches: 44, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
120 2 0.01
121 103 0.32
122 2 0.01
123 207 0.65
124 4 0.01
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.22
Consensus pattern (123 bp):
ATACACTAGCACAAAGCCTGCTAGGCACAAAGCCTGATATAATACACTGACACGAAGCCTGCTAG
GCACAAAGCCTGATATAATACACAGACATGAAGCCTGCTAGGCACAAAGCTTGATATA
Found at i:68624586 original size:36 final size:36
Alignment explanation
Indices: 68624525--68624611 Score: 126
Period size: 36 Copynumber: 2.5 Consensus size: 36
68624515 TTAGCTCTTA
68624525 TGAGCAT-TGGTGTG--TTAGAGGGATTGGCTCGTG
1 TGAGCATCTGGTGTGTTTTAGAGGGATTGGCTCGTG
*
68624558 TGAGCATCTGGTGTGTTTTGGAGGGATTGGCTCGTG
1 TGAGCATCTGGTGTGTTTTAGAGGGATTGGCTCGTG
**
68624594 TGAGCATCTACTGTGTTT
1 TGAGCATCTGGTGTGTTT
68624612 GGTTGGATTG
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
33 7 0.15
34 7 0.15
36 34 0.71
ACGTcount: A:0.14, C:0.11, G:0.38, T:0.37
Consensus pattern (36 bp):
TGAGCATCTGGTGTGTTTTAGAGGGATTGGCTCGTG
Found at i:68638470 original size:10 final size:10
Alignment explanation
Indices: 68638423--68638448 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
68638413 GAATTTGTCG
68638423 AAAATTAATC
1 AAAATTAATC
68638433 AAAATTAATC
1 AAAATTAATC
68638443 AAAATT
1 AAAATT
68638449 TATTAGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (10 bp):
AAAATTAATC
Found at i:68641030 original size:50 final size:50
Alignment explanation
Indices: 68640927--68641168 Score: 243
Period size: 50 Copynumber: 4.7 Consensus size: 50
68640917 GGTAAAGATA
* *
68640927 TCCCATGTAAGACCATGTCTGGGACATGACATTGGTATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGG---CACTGAG---ATGAGAGG
*
68640983 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACTGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGG
** * * * * **
68641033 TCCCCCGTAAGACCATGTTTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGG
* * * * * * **
68641083 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCAGT-ACAAGAAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGG
*
68641132 TCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
68641169 TGTTATTATC
Statistics
Matches: 158, Mismatches: 28, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
49 39 0.25
50 80 0.51
53 6 0.04
56 33 0.21
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGG
Found at i:68647736 original size:25 final size:25
Alignment explanation
Indices: 68647702--68647751 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
68647692 GCGGACACAC
*
68647702 TGCAACTCGT-ATGAGCTTACTAATT
1 TGCAACTCGTGA-GAGCATACTAATT
*
68647727 TGCAGCTCGTGAGAGCATACTAATT
1 TGCAACTCGTGAGAGCATACTAATT
68647752 CATAGCTTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (25 bp):
TGCAACTCGTGAGAGCATACTAATT
Found at i:68654734 original size:50 final size:50
Alignment explanation
Indices: 68654652--68654764 Score: 165
Period size: 50 Copynumber: 2.3 Consensus size: 50
68654642 ACGGACACAC
* *
68654652 CATAGCTCGTATGAGCTTACCGATTTGCAGCTCGTGAGAGCTTACCAATT
1 CATAGCTCGTATGAGCTTACCGATTTACAGCTCGTGAGAGCATACCAATT
* * *
68654702 C-TCAGCTCGTATGAGCTTACTGATTTATAGCTCGTGAGAGCATACCGATT
1 CAT-AGCTCGTATGAGCTTACCGATTTACAGCTCGTGAGAGCATACCAATT
68654752 CATAGCTCGTATG
1 CATAGCTCGTATG
68654765 GGTATACTAA
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
49 1 0.02
50 54 0.96
51 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (50 bp):
CATAGCTCGTATGAGCTTACCGATTTACAGCTCGTGAGAGCATACCAATT
Found at i:68654756 original size:25 final size:25
Alignment explanation
Indices: 68654652--68654764 Score: 115
Period size: 25 Copynumber: 4.5 Consensus size: 25
68654642 ACGGACACAC
68654652 CATAGCTCGTATGAGCTTACCGATT
1 CATAGCTCGTATGAGCTTACCGATT
*** *
68654677 TGCAGCTCGTGA-GAGCTTACCAATT
1 CATAGCTCGT-ATGAGCTTACCGATT
*
68654702 C-TCAGCTCGTATGAGCTTACTGATT
1 CAT-AGCTCGTATGAGCTTACCGATT
* *
68654727 TATAGCTCGTGA-GAGCATACCGATT
1 CATAGCTCGT-ATGAGCTTACCGATT
68654752 CATAGCTCGTATG
1 CATAGCTCGTATG
68654765 GGTATACTAA
Statistics
Matches: 70, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
24 2 0.03
25 65 0.93
26 3 0.04
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (25 bp):
CATAGCTCGTATGAGCTTACCGATT
Found at i:68654964 original size:248 final size:248
Alignment explanation
Indices: 68654526--68655006 Score: 768
Period size: 248 Copynumber: 1.9 Consensus size: 248
68654516 TATAAAATGG
* * * *
68654526 ATTGCATATTCGATGACGTACGTCGATTATCGAGCCATGTTTGAACCTTAGGAATTTATAGGATA
1 ATTGCATATCCGATGACGTACGTCGATTATCGAGCCATATTTGAACCTTAAGAATTCATAGGATA
* *
68654591 CAAATGACATGTCATTAGGGTTACCGATTTGGTTGAGGTCCTGCATGTGTTACGGACACACCATA
66 CAAATGACATGTCATTAGGGTTACCGATTTGATTGAGGTCCTGCATGTGTTACGGACACACCACA
*
68654656 GCTCGTATGAGCTTACCGATTTGCAGCTCGTGAGAGCTTACCAATTCTCAGCTCGTATGAGCTTA
131 GCTCGTATGAGCTTACCGATTTGCAACTCGTGAGAGCTTACCAATTCTCAGCTCGTATGAGCTTA
* * *
68654721 CTGATTTATAGCTCGTGAGAGCATACCGATTCATAGCTCGTATGGGTATACTA
196 CCGATTTACAGCTCGTGAGAGCATACCGATTCACAGCTCGTATGGGTATACTA
68654774 ATTGCATATCCGATGACGTACGAT-GATTATCGAGCC-TCATTTGAACCTTAAGAATTCATAGGA
1 ATTGCATATCCGATGACGTACG-TCGATTATCGAGCCAT-ATTTGAACCTTAAGAATTCATAGGA
* * * *
68654837 TAGAAATGACATGTCATTAGGGTTACTGATTTGATTGAGGTCCTGCATGTGTTACGGACACATCG
64 TACAAATGACATGTCATTAGGGTTACCGATTTGATTGAGGTCCTGCATGTGTTACGGACACACCA
** * *
68654902 CAGCTCGTATGAGCTTACCGATTTGCAACTCGTGAGAGCTTACTGATTCTCAGTTTGTATGAGCT
129 CAGCTCGTATGAGCTTACCGATTTGCAACTCGTGAGAGCTTACCAATTCTCAGCTCGTATGAGCT
68654967 TACCGATTTACAGCTCGTGAGAGCATACCGATTCACAGCT
194 TACCGATTTACAGCTCGTGAGAGCATACCGATTCACAGCT
68655007 TGTGTGAGCA
Statistics
Matches: 213, Mismatches: 18, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
247 1 0.00
248 211 0.99
249 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (248 bp):
ATTGCATATCCGATGACGTACGTCGATTATCGAGCCATATTTGAACCTTAAGAATTCATAGGATA
CAAATGACATGTCATTAGGGTTACCGATTTGATTGAGGTCCTGCATGTGTTACGGACACACCACA
GCTCGTATGAGCTTACCGATTTGCAACTCGTGAGAGCTTACCAATTCTCAGCTCGTATGAGCTTA
CCGATTTACAGCTCGTGAGAGCATACCGATTCACAGCTCGTATGGGTATACTA
Found at i:68654984 original size:50 final size:50
Alignment explanation
Indices: 68654902--68655015 Score: 156
Period size: 50 Copynumber: 2.3 Consensus size: 50
68654892 GGACACATCG
* * * * *
68654902 CAGCTCGTATGAGCTTACCGATTTGCAACTCGTGAGAGCTTACTGATTCT
1 CAGCTTGTATGAGCTTACCGATTTACAACTCGTGAGAGCATACCGATTCA
* *
68654952 CAGTTTGTATGAGCTTACCGATTTACAGCTCGTGAGAGCATACCGATTCA
1 CAGCTTGTATGAGCTTACCGATTTACAACTCGTGAGAGCATACCGATTCA
*
68655002 CAGCTTGTGTGAGC
1 CAGCTTGTATGAGC
68655016 ATACATGTAC
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.31
Consensus pattern (50 bp):
CAGCTTGTATGAGCTTACCGATTTACAACTCGTGAGAGCATACCGATTCA
Found at i:68655004 original size:25 final size:25
Alignment explanation
Indices: 68654902--68655015 Score: 97
Period size: 25 Copynumber: 4.6 Consensus size: 25
68654892 GGACACATCG
**
68654902 CAGCTCGT-ATGAGCTTACCGATTTG
1 CAGCTCGTGA-GAGCTTACCGATTCA
* * *
68654927 CAACTCGTGAGAGCTTACTGATTCT
1 CAGCTCGTGAGAGCTTACCGATTCA
* * *
68654952 CAGTTTGT-ATGAGCTTACCGATTTA
1 CAGCTCGTGA-GAGCTTACCGATTCA
*
68654977 CAGCTCGTGAGAGCATACCGATTCA
1 CAGCTCGTGAGAGCTTACCGATTCA
* *
68655002 CAGCTTGTGTGAGC
1 CAGCTCGTGAGAGC
68655016 ATACATGTAC
Statistics
Matches: 70, Mismatches: 16, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
24 1 0.01
25 67 0.96
26 2 0.03
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.31
Consensus pattern (25 bp):
CAGCTCGTGAGAGCTTACCGATTCA
Found at i:68656185 original size:30 final size:30
Alignment explanation
Indices: 68656146--68656214 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
68656136 GTGTGTCTTA
68656146 GCCGTGTGTGACACATGGCTAGGTGACACG
1 GCCGTGTGTGACACATGGCTAGGTGACACG
* *
68656176 GCGGTGTGTGACACATGGCTAGGTTACACG
1 GCCGTGTGTGACACATGGCTAGGTGACACG
68656206 GCCGTGTGT
1 GCCGTGTGT
68656215 CCTTTGTAGC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.17, C:0.22, G:0.38, T:0.23
Consensus pattern (30 bp):
GCCGTGTGTGACACATGGCTAGGTGACACG
Found at i:68659480 original size:10 final size:10
Alignment explanation
Indices: 68659465--68659489 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
68659455 AAATCTATCG
68659465 AAAATAAATC
1 AAAATAAATC
68659475 AAAATAAATC
1 AAAATAAATC
68659485 AAAAT
1 AAAAT
68659490 TCATTATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (10 bp):
AAAATAAATC
Found at i:68667305 original size:39 final size:40
Alignment explanation
Indices: 68667199--68667383 Score: 193
Period size: 40 Copynumber: 4.7 Consensus size: 40
68667189 TTGAATGATG
** * *
68667199 TCCGGGCTAAGTCCCGAAGGC-TTTGTGTTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTG-CGAGTTACTAAT
* * *
68667238 ATCCGGACTAAGAT-CCGAGGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
68667279 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
*
68667319 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
68667357 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
68667384 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 14, Indels: 16
0.80 0.09 0.10
Matches are distributed among these distances:
38 2 0.02
39 30 0.24
40 82 0.67
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:68667405 original size:79 final size:79
Alignment explanation
Indices: 68667252--68667416 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
68667242 GGACTAAGAT
* * ** *
68667252 CCGAGGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
* *
68667317 ATTCGGGTTAAGTC
66 ATTCCGGTTAAATC
* *
68667331 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-C
* *
68667394 TATA-TCCGGTTAAATT
63 TAAATTCCGGTTAAATC
68667410 CCGAAGG
1 CCGAAGG
68667417 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.67
80 22 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATTCCGGTTAAATC
Found at i:68675208 original size:40 final size:41
Alignment explanation
Indices: 68675125--68675270 Score: 176
Period size: 40 Copynumber: 3.6 Consensus size: 41
68675115 TTGAATGATG
* * * *
68675125 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACCAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
*
68675165 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
68675205 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
68675246 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
68675271 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
39 1 0.01
40 82 0.89
41 9 0.10
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:68675284 original size:40 final size:40
Alignment explanation
Indices: 68675126--68675289 Score: 120
Period size: 40 Copynumber: 4.1 Consensus size: 40
68675116 TGAATGATGT
* ** * * *
68675126 CCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTGACTATAA
* ** *
68675166 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGAACGAGTGACTATAA
* ** *
68675205 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATAA
* *
68675246 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTATAA
68675286 CCGG
1 CCGG
68675290 TTAAATTCCG
Statistics
Matches: 104, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
39 3 0.03
40 92 0.88
41 9 0.09
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATAA
Found at i:68675288 original size:80 final size:80
Alignment explanation
Indices: 68675125--68675303 Score: 177
Period size: 80 Copynumber: 2.2 Consensus size: 80
68675115 TTGAATGATG
* *
68675125 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTGGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
** *
68675190 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
* * * * * *
68675205 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTGGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
*
68675268 TTGAACGAG-GAGCTATA
64 TTGAACGAGTGA-CTAAA
* *
68675285 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
68675304 TACGTGATTT
Statistics
Matches: 82, Mismatches: 14, Indels: 7
0.80 0.14 0.07
Matches are distributed among these distances:
79 16 0.20
80 60 0.73
81 6 0.07
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTGGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTGACTAAA
Found at i:68675937 original size:200 final size:200
Alignment explanation
Indices: 68675697--68676069 Score: 746
Period size: 200 Copynumber: 1.9 Consensus size: 200
68675687 GTCGAAGTCT
68675697 CCCACACTATCAAAGCCCCCTTTTGGTACAATTTTGGTTGAACTTCGAAATGGCATGTATAGGAC
1 CCCACACTATCAAAGCCCCCTTTTGGTACAATTTTGGTTGAACTTCGAAATGGCATGTATAGGAC
68675762 TACCCGTTTGTTGTGGGTCGTGGACCCTTTGGACTTGTAAAATTTTGGATAGCCATGCGAAAATG
66 TACCCGTTTGTTGTGGGTCGTGGACCCTTTGGACTTGTAAAATTTTGGATAGCCATGCGAAAATG
68675827 GCTTATATGTGTTTGAGTATAATGTTATAATCATTTGGTGTGGGGACTCGGGATCTTGAAGTCAA
131 GCTTATATGTGTTTGAGTATAATGTTATAATCATTTGGTGTGGGGACTCGGGATCTTGAAGTCAA
68675892 ATTCG
196 ATTCG
68675897 CCCACACTATCAAAGCCCCCTTTTGGTACAATTTTGGTTGAACTTCGAAATGGCATGTATAGGAC
1 CCCACACTATCAAAGCCCCCTTTTGGTACAATTTTGGTTGAACTTCGAAATGGCATGTATAGGAC
68675962 TACCCGTTTGTTGTGGGTCGTGGACCCTTTGGACTTGTAAAATTTTGGATAGCCATGCGAAAATG
66 TACCCGTTTGTTGTGGGTCGTGGACCCTTTGGACTTGTAAAATTTTGGATAGCCATGCGAAAATG
68676027 GCTTATATGTGTTTGAGTATAATGTTATAATCATTTGGTGTGG
131 GCTTATATGTGTTTGAGTATAATGTTATAATCATTTGGTGTGG
68676070 ATATGCTTGA
Statistics
Matches: 173, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
200 173 1.00
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (200 bp):
CCCACACTATCAAAGCCCCCTTTTGGTACAATTTTGGTTGAACTTCGAAATGGCATGTATAGGAC
TACCCGTTTGTTGTGGGTCGTGGACCCTTTGGACTTGTAAAATTTTGGATAGCCATGCGAAAATG
GCTTATATGTGTTTGAGTATAATGTTATAATCATTTGGTGTGGGGACTCGGGATCTTGAAGTCAA
ATTCG
Found at i:68679449 original size:29 final size:29
Alignment explanation
Indices: 68679413--68679501 Score: 102
Period size: 29 Copynumber: 3.3 Consensus size: 29
68679403 TGATCTTAAA
68679413 AGATATGATTTTATAATCTTAGAGATCTT
1 AGATATGATTTTATAATCTTAGAGATCTT
* * *
68679442 AGATATGA-TATGTAATCTT----A--TA
1 AGATATGATTTTATAATCTTAGAGATCTT
68679464 AGATATGATTTTATAATCTTAGAGATCTT
1 AGATATGATTTTATAATCTTAGAGATCTT
68679493 AGATATGAT
1 AGATATGAT
68679502 ATGTAATCTT
Statistics
Matches: 47, Mismatches: 6, Indels: 14
0.70 0.09 0.21
Matches are distributed among these distances:
22 9 0.19
23 9 0.19
24 1 0.02
27 1 0.02
28 9 0.19
29 18 0.38
ACGTcount: A:0.37, C:0.06, G:0.15, T:0.43
Consensus pattern (29 bp):
AGATATGATTTTATAATCTTAGAGATCTT
Found at i:68679470 original size:17 final size:17
Alignment explanation
Indices: 68679448--68679572 Score: 66
Period size: 17 Copynumber: 7.4 Consensus size: 17
68679438 TCTTAGATAT
68679448 GATATGTAATCTTATAA
1 GATATGTAATCTTATAA
*
68679465 GATATG--ATTTTATAA
1 GATATGTAATCTTATAA
** *
68679480 TCT-TAG-AGATCTTAGATAT
1 GATAT-GTA-ATCTT--ATAA
68679499 GATATGTAATCTTATAA
1 GATATGTAATCTTATAA
*
68679516 GATAT-T-ATTTTATAA
1 GATATGTAATCTTATAA
**
68679531 GAT-TACATATCTTAGATAA
1 GATATGTA-ATCTT--ATAA
*
68679550 GATATGTAATCTTAGAA
1 GATATGTAATCTTATAA
68679567 GATATG
1 GATATG
68679573 ATTTTATATT
Statistics
Matches: 81, Mismatches: 14, Indels: 26
0.67 0.12 0.21
Matches are distributed among these distances:
14 2 0.02
15 21 0.26
16 1 0.01
17 31 0.38
19 22 0.27
20 4 0.05
ACGTcount: A:0.39, C:0.06, G:0.14, T:0.42
Consensus pattern (17 bp):
GATATGTAATCTTATAA
Found at i:68679561 original size:19 final size:19
Alignment explanation
Indices: 68679488--68679565 Score: 62
Period size: 19 Copynumber: 4.4 Consensus size: 19
68679478 AATCTTAGAG
*
68679488 ATCTTAGATATGATATGTA
1 ATCTTAGATAAGATATGTA
68679507 ATCTT--ATAAGATAT-T-
1 ATCTTAGATAAGATATGTA
* **
68679522 AT-TT-TATAAGAT-TACA
1 ATCTTAGATAAGATATGTA
68679538 TATCTTAGATAAGATATGTA
1 -ATCTTAGATAAGATATGTA
68679558 ATCTTAGA
1 ATCTTAGA
68679566 AGATATGATT
Statistics
Matches: 47, Mismatches: 5, Indels: 14
0.71 0.08 0.21
Matches are distributed among these distances:
14 3 0.06
15 9 0.19
16 1 0.02
17 10 0.21
18 2 0.04
19 20 0.43
20 2 0.04
ACGTcount: A:0.40, C:0.06, G:0.12, T:0.42
Consensus pattern (19 bp):
ATCTTAGATAAGATATGTA
Found at i:68679604 original size:51 final size:51
Alignment explanation
Indices: 68679405--68679591 Score: 293
Period size: 51 Copynumber: 3.7 Consensus size: 51
68679395 TGGAAACATG
*
68679405 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATATGATATGTA
1 ATCTTATAAGATATGATTTTATAATCTTAGAGATCTTAGATATGATATGTA
68679456 ATCTTATAAGATATGATTTTATAATCTTAGAGATCTTAGATATGATATGTA
1 ATCTTATAAGATATGATTTTATAATCTTAGAGATCTTAGATATGATATGTA
* ** * * *
68679507 ATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTA
1 ATCTTATAAGATATGATTTTATAATCTTAGAGATCTTAGATATGATATGTA
* *
68679558 ATCTTAGAAGATATGATTTTATATTCTTAGAGAT
1 ATCTTATAAGATATGATTTTATAATCTTAGAGAT
68679592 TTGATTGTAG
Statistics
Matches: 122, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 122 1.00
ACGTcount: A:0.39, C:0.06, G:0.13, T:0.43
Consensus pattern (51 bp):
ATCTTATAAGATATGATTTTATAATCTTAGAGATCTTAGATATGATATGTA
Found at i:68688985 original size:30 final size:30
Alignment explanation
Indices: 68688944--68689000 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
68688934 CTTTCGAGCA
* *
68688944 TAGGGGTAAAATGGTCATTTTGTCAAAGTC
1 TAGGGGCAAAATGGTCATTTTATCAAAGTC
68688974 TAGGGGCAAAATGGTCATTTTATCAAA
1 TAGGGGCAAAATGGTCATTTTATCAAA
68689001 TATGTAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.32
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTATCAAAGTC
Found at i:68691375 original size:42 final size:43
Alignment explanation
Indices: 68691314--68691423 Score: 127
Period size: 42 Copynumber: 2.6 Consensus size: 43
68691304 AATTCGAAAT
* *
68691314 TTACGTGTAAGACCCTGTCTGGGACATCA-GCATCG-TATCTGAA
1 TTACGTGTAAGACCATGTCTAGGACA-CAGGCATCGATA-CTGAA
* * *
68691357 TT-CGTGTAAGACCTTGTCTAGGATAGAGGCATCGATACTGAA
1 TTACGTGTAAGACCATGTCTAGGACACAGGCATCGATACTGAA
*
68691399 TTACATGTAAGACCATGTCTAGGAC
1 TTACGTGTAAGACCATGTCTAGGAC
68691424 GTCGGCATTG
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
41 1 0.02
42 33 0.58
43 23 0.40
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (43 bp):
TTACGTGTAAGACCATGTCTAGGACACAGGCATCGATACTGAA
Found at i:68704790 original size:47 final size:47
Alignment explanation
Indices: 68704727--68705451 Score: 1056
Period size: 47 Copynumber: 15.4 Consensus size: 47
68704717 CCCTTCGGGA
* *
68704727 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
68704774 CTTATCACATATATACACCTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
68704821 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
68704868 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
68704915 CTTATCACATA-ATTACACTTTCACATTCATCCCATCGGCCATTAGGT
1 CTTATCACATATA-TACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
68704962 CTTATCTCATATATACGCTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
68705009 CTTATCACATATATACGCTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
68705056 CTTATCACATATATACGCTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
68705103 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
68705150 CTTATCACATATATACACTTTCACATTTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACA-TTCATCACATTGGCCATTCGGC
68705198 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
68705245 CTTATCACATATTTACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
68705292 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
68705339 CTTATCACATATATACACTTTCACATTTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACA-TTCATCACATTGGCCATTCGGC
* * *
68705387 CTTATCACATATATACACTTTCACATTAATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
68705434 CTTATCACATATACACAC
1 CTTATCACATATATACAC
68705452 CTTGTACATC
Statistics
Matches: 626, Mismatches: 48, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
46 1 0.00
47 534 0.85
48 91 0.15
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:68709617 original size:25 final size:25
Alignment explanation
Indices: 68709588--68709644 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
68709578 TGTATATAAG
**
68709588 CTGAAAATGTTATAGATAGTA-TGTA
1 CTGAAAATACTATAGATAG-ACTGTA
* *
68709613 CTGAAACTACTATATATAGACTGTA
1 CTGAAAATACTATAGATAGACTGTA
68709638 CTGAAAA
1 CTGAAAA
68709645 CACTTAAGTT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.32
Consensus pattern (25 bp):
CTGAAAATACTATAGATAGACTGTA
Found at i:68717915 original size:33 final size:33
Alignment explanation
Indices: 68717877--68718271 Score: 481
Period size: 33 Copynumber: 12.0 Consensus size: 33
68717867 TTTCTTTCCG
* * **
68717877 AATGGTACACACAAAGTATACTTTTCCTTTTCA
1 AATGGTATACACAAAGTATACCTAACCTTTTCA
68717910 AATGGTATACACAAAGTATACCTAACCTTTTCA
1 AATGGTATACACAAAGTATACCTAACCTTTTCA
* * **
68717943 TATGGTAGACACAAAGTATACCTTTCCTTTTCA
1 AATGGTATACACAAAGTATACCTAACCTTTTCA
68717976 AATGGTATACACAAAGTATACCTAACCTTTTCA
1 AATGGTATACACAAAGTATACCTAACCTTTTCA
* **
68718009 TATGGTATACACAAAGTATACCTTTCCTTTTCA
1 AATGGTATACACAAAGTATACCTAACCTTTTCA
*
68718042 AATGGTACACACAAAGTATACCTAACCTTTTCA
1 AATGGTATACACAAAGTATACCTAACCTTTTCA
* * ****
68718075 TATGGTATACACTAAGTATACCTTTTTTTTTTCA
1 AATGGTATACACAAAGTATACC-TAACCTTTTCA
68718109 AATGGTATACACAAAG--TACCTAACCTTTTCA
1 AATGGTATACACAAAGTATACCTAACCTTTTCA
* * * * **
68718140 TATTGTATACATAAAGTATACATTTCCTTTTCA
1 AATGGTATACACAAAGTATACCTAACCTTTTCA
*
68718173 AATGGTATAAACAAAGTATACCTAACCTTTTCA
1 AATGGTATACACAAAGTATACCTAACCTTTTCA
* * *
68718206 TATGGTATACACAAAGTATGCCTAACCTTTCCA
1 AATGGTATACACAAAGTATACCTAACCTTTTCA
* * *
68718239 AAT-GTACACACAAAGTGTACATAACCTTTTCA
1 AATGGTATACACAAAGTATACCTAACCTTTTCA
68718271 A
1 A
68718272 GTTGTACCAT
Statistics
Matches: 304, Mismatches: 55, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
31 20 0.07
32 29 0.10
33 234 0.77
34 21 0.07
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (33 bp):
AATGGTATACACAAAGTATACCTAACCTTTTCA
Found at i:68717955 original size:66 final size:66
Alignment explanation
Indices: 68717878--68718270 Score: 594
Period size: 66 Copynumber: 6.0 Consensus size: 66
68717868 TTCTTTCCGA
* *
68717878 ATGGTACACACAAAGTATACTTTTCCTTTTCAAATGGTATACACAAAGTATACCTAACCTTTTCA
1 ATGGTATACACAAAGTATACCTTTCCTTTTCAAATGGTATACACAAAGTATACCTAACCTTTTCA
68717943 T
66 T
*
68717944 ATGGTAGACACAAAGTATACCTTTCCTTTTCAAATGGTATACACAAAGTATACCTAACCTTTTCA
1 ATGGTATACACAAAGTATACCTTTCCTTTTCAAATGGTATACACAAAGTATACCTAACCTTTTCA
68718009 T
66 T
*
68718010 ATGGTATACACAAAGTATACCTTTCCTTTTCAAATGGTACACACAAAGTATACCTAACCTTTTCA
1 ATGGTATACACAAAGTATACCTTTCCTTTTCAAATGGTATACACAAAGTATACCTAACCTTTTCA
68718075 T
66 T
* **
68718076 ATGGTATACACTAAGTATACCTTTTTTTTTTCAAATGGTATACACAAAG--TACCTAACCTTTTC
1 ATGGTATACACAAAGTATACC-TTTCCTTTTCAAATGGTATACACAAAGTATACCTAACCTTTTC
68718139 AT
65 AT
* * * *
68718141 ATTGTATACATAAAGTATACATTTCCTTTTCAAATGGTATAAACAAAGTATACCTAACCTTTTCA
1 ATGGTATACACAAAGTATACCTTTCCTTTTCAAATGGTATACACAAAGTATACCTAACCTTTTCA
68718206 T
66 T
* ** * * * *
68718207 ATGGTATACACAAAGTATGCCTAACCTTTCCAAAT-GTACACACAAAGTGTACATAACCTTTTCA
1 ATGGTATACACAAAGTATACCTTTCCTTTTCAAATGGTATACACAAAGTATACCTAACCTTTTCA
68718271 AGTTGTACCA
Statistics
Matches: 298, Mismatches: 26, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
64 24 0.08
65 58 0.19
66 192 0.64
67 24 0.08
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (66 bp):
ATGGTATACACAAAGTATACCTTTCCTTTTCAAATGGTATACACAAAGTATACCTAACCTTTTCA
T
Found at i:68718277 original size:131 final size:132
Alignment explanation
Indices: 68717885--68718270 Score: 589
Period size: 131 Copynumber: 2.9 Consensus size: 132
68717875 CGAATGGTAC
*
68717885 ACACAAAGTATACTTTTCCTTTTCAAATGGTATACACAAAGTATACCTAACCTTTTCATATGGTA
1 ACACAAAGTATACATTTCCTTTTCAAATGGTATACACAAAGTATACCTAACCTTTTCATATGGTA
* * *
68717950 GACACAAAGTATACCTTTCCTTTTCAAATGGTATACACAAAGTATACCTAACCTTTTCATATGGT
66 TACACAAAGTATACCTTTCCTTTTCAAATGGTATACACAAAGTGTACCTAACCTTTTCATATTGT
68718015 AT
131 AT
* *
68718017 ACACAAAGTATACCTTTCCTTTTCAAATGGTACACACAAAGTATACCTAACCTTTTCATATGGTA
1 ACACAAAGTATACATTTCCTTTTCAAATGGTATACACAAAGTATACCTAACCTTTTCATATGGTA
* **
68718082 TACACTAAGTATACCTTTTTTTTTTCAAATGGTATACACAAA--GTACCTAACCTTTTCATATTG
66 TACACAAAGTATACC-TTTCCTTTTCAAATGGTATACACAAAGTGTACCTAACCTTTTCATATTG
68718145 TAT
130 TAT
* *
68718148 ACATAAAGTATACATTTCCTTTTCAAATGGTATAAACAAAGTATACCTAACCTTTTCATATGGTA
1 ACACAAAGTATACATTTCCTTTTCAAATGGTATACACAAAGTATACCTAACCTTTTCATATGGTA
* ** * * *
68718213 TACACAAAGTATGCCTAACCTTTCCAAAT-GTACACACAAAGTGTACATAACCTTTTCA
66 TACACAAAGTATACCTTTCCTTTTCAAATGGTATACACAAAGTGTACCTAACCTTTTCA
68718271 AGTTGTACCA
Statistics
Matches: 230, Mismatches: 21, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
129 10 0.04
130 9 0.04
131 111 0.48
132 76 0.33
133 24 0.10
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (132 bp):
ACACAAAGTATACATTTCCTTTTCAAATGGTATACACAAAGTATACCTAACCTTTTCATATGGTA
TACACAAAGTATACCTTTCCTTTTCAAATGGTATACACAAAGTGTACCTAACCTTTTCATATTGT
AT
Found at i:68730544 original size:49 final size:49
Alignment explanation
Indices: 68730483--68730603 Score: 163
Period size: 49 Copynumber: 2.5 Consensus size: 49
68730473 TGTTGTGTGT
* *
68730483 CAGTGTAAGACCTATCTGGGACATGGCATTGACATCGATAGAT-AAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAA-AGC
* * * *
68730532 CAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGC
*
68730581 TAGTGTAAGACCTGTCTGGGACA
1 CAGTGTAAGACCTGTCTGGGACA
68730604 CGATATCAAC
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
49 62 0.97
50 2 0.03
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGC
Found at i:68732609 original size:23 final size:23
Alignment explanation
Indices: 68732579--68732624 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
68732569 CGGTAAGTAC
68732579 ATGTAATGAACAATTATTGATTT
1 ATGTAATGAACAATTATTGATTT
68732602 ATGTAATGAACAATTATTGATTT
1 ATGTAATGAACAATTATTGATTT
68732625 GTGACTTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.04, G:0.13, T:0.43
Consensus pattern (23 bp):
ATGTAATGAACAATTATTGATTT
Found at i:68732861 original size:33 final size:32
Alignment explanation
Indices: 68732824--68733075 Score: 167
Period size: 33 Copynumber: 7.7 Consensus size: 32
68732814 TACCCAAATG
* *
68732824 GTACAACTTGAAAAGGCTATGTACACTTTGTGT
1 GTAC-ACTTGAAAAGGATATGTATACTTTGTGT
* * *
68732857 GTACACTTGGAAAGGTTAGGTATACTTTGTGT
1 GTACACTTGAAAAGGATATGTATACTTTGTGT
* *
68732889 ATAC-CATATGAAAAGGAAATGTATACTTTGTGT
1 GTACAC-T-TGAAAAGGATATGTATACTTTGTGT
* *
68732922 ATAC-CATATGAAAAGGGA-AGGTATACTTTGTGT
1 GTACAC-T-TGAAAA-GGATATGTATACTTTGTGT
* * *
68732955 ATATCA-TATGAAAAGGAAAGGTATACTTTGTGT
1 GTA-CACT-TGAAAAGGATATGTATACTTTGTGT
* * *
68732988 ATATCA-TATGAAAAGGAAAGGTATACTTTGTGT
1 GTA-CACT-TGAAAAGGATATGTATACTTTGTGT
* * *
68733021 ATAC-CATATGAAAAGGAAAGGTATACTTTGTGT
1 GTACAC-T-TGAAAAGGATATGTATACTTTGTGT
*
68733054 ATACCACTTGAAAAGGA-ATGTA
1 GTA-CACTTGAAAAGGATATGTA
68733076 CACCTCAAGT
Statistics
Matches: 198, Mismatches: 11, Indels: 21
0.86 0.05 0.09
Matches are distributed among these distances:
31 1 0.01
32 36 0.18
33 154 0.78
34 6 0.03
35 1 0.01
ACGTcount: A:0.37, C:0.10, G:0.22, T:0.32
Consensus pattern (32 bp):
GTACACTTGAAAAGGATATGTATACTTTGTGT
Found at i:68732956 original size:66 final size:66
Alignment explanation
Indices: 68732874--68733071 Score: 344
Period size: 66 Copynumber: 3.0 Consensus size: 66
68732864 TGGAAAGGTT
* *
68732874 AGGTATACTTTGTGTATACCATATGAAAAGGAAATGTATACTTTGTGTATACCATATGAAAAGGG
1 AGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTATACTTTGTGTATACCATATGAAAAGGA
68732939 A
66 A
* *
68732940 AGGTATACTTTGTGTATATCATATGAAAAGGAAAGGTATACTTTGTGTATATCATATGAAAAGGA
1 AGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTATACTTTGTGTATACCATATGAAAAGGA
68733005 A
66 A
68733006 AGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTATACTTTGTGTATACCACT-TGAAAAGG
1 AGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTATACTTTGTGTATACCA-TATGAAAAGG
68733070 AA
65 AA
68733072 TGTACACCTC
Statistics
Matches: 125, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
66 124 0.99
67 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.21, T:0.32
Consensus pattern (66 bp):
AGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTATACTTTGTGTATACCATATGAAAAGGA
A
Found at i:68732996 original size:99 final size:99
Alignment explanation
Indices: 68732848--68733071 Score: 353
Period size: 99 Copynumber: 2.3 Consensus size: 99
68732838 GGCTATGTAC
* * ** *
68732848 ACTTTGTGTGTA-CACTTGGAAAGGTTAGGTATACTTTGTGTATACCATATGAAAAGGAAATGTA
1 ACTTTGTGTATACCACTTGAAAAGGAAAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTA
*
68732912 TACTTTGTGTATACCATATGAAAAGGGAAGGTAT
66 TACTTTGTGTATACCATATGAAAAGGAAAGGTAT
* *
68732946 ACTTTGTGTATATCA-TATGAAAAGGAAAGGTATACTTTGTGTATATCATATGAAAAGGAAAGGT
1 ACTTTGTGTATACCACT-TGAAAAGGAAAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGT
68733010 ATACTTTGTGTATACCATATGAAAAGGAAAGGTAT
65 ATACTTTGTGTATACCATATGAAAAGGAAAGGTAT
68733045 ACTTTGTGTATACCACTTGAAAAGGAA
1 ACTTTGTGTATACCACTTGAAAAGGAA
68733072 TGTACACCTC
Statistics
Matches: 115, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
98 12 0.10
99 102 0.89
100 1 0.01
ACGTcount: A:0.37, C:0.09, G:0.22, T:0.33
Consensus pattern (99 bp):
ACTTTGTGTATACCACTTGAAAAGGAAAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTA
TACTTTGTGTATACCATATGAAAAGGAAAGGTAT
Found at i:68740512 original size:33 final size:32
Alignment explanation
Indices: 68740475--68740687 Score: 83
Period size: 33 Copynumber: 6.5 Consensus size: 32
68740465 TACCCAAATG
*
68740475 GTACAACTTGAAAAGGCTATGTACACTTTGTGT
1 GTAC-ACTTGAAAAGGCTAGGTACACTTTGTGT
* * * *
68740508 GTACACTTGGAAATGTTAGGTATACTTTGTGT
1 GTACACTTGAAAAGGCTAGGTACACTTTGTGT
* ** * * *
68740540 ATAC-CATATGAAAAGGAAAGGTATAATTTATGT
1 GTACAC-T-TGAAAAGGCTAGGTACACTTTGTGT
* ** *
68740573 ATAC-CATATGAAAAGGGAAGGTATACTTTGTGT
1 GTACAC-T-TGAAAAGGCTAGGTACACTTTGTGT
* * ** *
68740606 ATATCA-TATAAAAAGGAAAGGTATACTTTGTGT
1 GTA-CACT-TGAAAAGGCTAGGTACACTTTGTGT
* ** *
68740639 ATAC-CATATGAAAAGGAAAGGTATACTTTGTGT
1 GTACAC-T-TGAAAAGGCTAGGTACACTTTGTGT
*
68740672 GTACCACTTGGAAAGG
1 GTA-CACTTGAAAAGG
68740688 AATGTACACC
Statistics
Matches: 152, Mismatches: 20, Indels: 16
0.81 0.11 0.09
Matches are distributed among these distances:
31 1 0.01
32 28 0.18
33 119 0.78
34 3 0.02
35 1 0.01
ACGTcount: A:0.36, C:0.10, G:0.22, T:0.32
Consensus pattern (32 bp):
GTACACTTGAAAAGGCTAGGTACACTTTGTGT
Found at i:68740689 original size:33 final size:33
Alignment explanation
Indices: 68740525--68740677 Score: 252
Period size: 33 Copynumber: 4.6 Consensus size: 33
68740515 TGGAAATGTT
68740525 AGGTATACTTTGTGTATACCATATGAAAAGGAA
1 AGGTATACTTTGTGTATACCATATGAAAAGGAA
* * *
68740558 AGGTATAATTTATGTATACCATATGAAAAGGGA
1 AGGTATACTTTGTGTATACCATATGAAAAGGAA
* *
68740591 AGGTATACTTTGTGTATATCATATAAAAAGGAA
1 AGGTATACTTTGTGTATACCATATGAAAAGGAA
68740624 AGGTATACTTTGTGTATACCATATGAAAAGGAA
1 AGGTATACTTTGTGTATACCATATGAAAAGGAA
*
68740657 AGGTATACTTTGTGTGTACCA
1 AGGTATACTTTGTGTATACCA
68740678 CTTGGAAAGG
Statistics
Matches: 109, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 109 1.00
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (33 bp):
AGGTATACTTTGTGTATACCATATGAAAAGGAA
Found at i:68747364 original size:56 final size:56
Alignment explanation
Indices: 68747273--68747448 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
68747263 ACAAGGGATG
68747273 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
68747329 ATGGGCAAAACATGTCATGAAACATGTTGTATTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
68747385 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
68747441 ATGGGCAA
1 ATGGGCAA
68747449 TAAACTAATA
Statistics
Matches: 117, Mismatches: 3, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
56 117 1.00
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:68748790 original size:80 final size:80
Alignment explanation
Indices: 68748576--68748800 Score: 280
Period size: 79 Copynumber: 2.8 Consensus size: 80
68748566 TCGAATGATG
* * * * *
68748576 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
68748639 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
* *
68748656 TCCGGGCTAAG-CCCGAAGGCA-TTGATGCGAGTTACTA-AATCCGGGTTAAATCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCAT
*
68748718 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
* *
68748735 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
68748800 G
66 G
68748801 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
78 2 0.02
79 60 0.48
80 58 0.46
81 5 0.04
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:68748807 original size:40 final size:40
Alignment explanation
Indices: 68748576--68748800 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
68748566 TCGAATGATG
* * * *
68748576 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
68748616 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
68748656 TCCGGGCTAAG-CCCGAAGGCA-TTGATGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTAAA
* *
68748695 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68748735 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
68748776 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
68748801 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
38 3 0.02
39 30 0.18
40 117 0.72
41 13 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:68750142 original size:123 final size:123
Alignment explanation
Indices: 68749986--68750224 Score: 469
Period size: 123 Copynumber: 1.9 Consensus size: 123
68749976 TCTATGTTTC
68749986 AGCCGAATTTATTATGTCTCATTGTTGACTTAATGTGTTTGAAGTCCAGCCGAAATTAATTGCCT
1 AGCCGAATTTATTATGTCTCATTGTTGACTTAATGTGTTTGAAGTCCAGCCGAAATTAATTGCCT
68750051 TTAGATGCATTGTTTGACCGAATTTAATTTGTGTTTGCAGGTCATTAAATTTATAAGA
66 TTAGATGCATTGTTTGACCGAATTTAATTTGTGTTTGCAGGTCATTAAATTTATAAGA
*
68750109 AGCCGAATTTATTATGTCTCATTGTTGACTTAATGTGTTTGAAGTCCAGCCGAAATTAATTGTCT
1 AGCCGAATTTATTATGTCTCATTGTTGACTTAATGTGTTTGAAGTCCAGCCGAAATTAATTGCCT
68750174 TTAGATGCATTGTTTGACCGAATTTAATTTGTGTTTGCAGGTCATTAAATT
66 TTAGATGCATTGTTTGACCGAATTTAATTTGTGTTTGCAGGTCATTAAATT
68750225 CGGCTACTTA
Statistics
Matches: 115, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 115 1.00
ACGTcount: A:0.27, C:0.13, G:0.19, T:0.41
Consensus pattern (123 bp):
AGCCGAATTTATTATGTCTCATTGTTGACTTAATGTGTTTGAAGTCCAGCCGAAATTAATTGCCT
TTAGATGCATTGTTTGACCGAATTTAATTTGTGTTTGCAGGTCATTAAATTTATAAGA
Found at i:68751163 original size:15 final size:15
Alignment explanation
Indices: 68751143--68751173 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
68751133 TAGAAATCGG
68751143 GGTGACACTTTTAGT
1 GGTGACACTTTTAGT
68751158 GGTGACACTTTTAGT
1 GGTGACACTTTTAGT
68751173 G
1 G
68751174 CTGCTGGCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.13, G:0.29, T:0.39
Consensus pattern (15 bp):
GGTGACACTTTTAGT
Found at i:68751551 original size:439 final size:442
Alignment explanation
Indices: 68750727--68751597 Score: 1658
Period size: 439 Copynumber: 2.0 Consensus size: 442
68750717 CATTTAAAGC
68750727 TGCTGCTGGCCATCCGAATTTCCAAGGCTGATTATTGAAGGATATTAAAGATTTTTGATGCCATT
1 TGCTGCTGGCCATCCGAATTTCCAAGGCTGATTATTGAAGGATATTAAAGATTTTTGATGCCATT
68750792 GCCGTCCCCAAGGTCTCGGATTCTTCAAAGGAGTGAACTTAGCTCTTAAGCTATTTTAGTTCATT
66 GCCGTCCCCAAGGTCTCGGATTCTTCAAAGGAGTGAACTTAGCTCTTAAGCTATTTTAGTTCATT
68750857 AAATTTGCTCATTTAATCTGAATTTTTGTGACCATTCGGTTGGGCACATTATAGACTATAAATAT
131 AAATTTGCTCATTTAATCTGAATTTTTGTGACCATTCGGTTGGGCAC--TATA-ACTATAAATAT
68750922 GTTGTAAATGGCTTGTTGAAGGGACTTTTGACTTTTGATCATTTGAATGAACTTTGTTCAAAGAG
193 GTTGTAAATGGCTTGTTGAAGGGACTTTTGACTTTTGATCATTTGAATGAACTTTGTTCAAAGAG
68750987 TGAGTTTTCTCCTCTCTAAATTCGTACGAGTTTCGATCTGACTTATCTAGCGTGCTAGTGGCGTC
258 TGAGTTTTCTCCTCTCTAAATTCGTACGAGTTTCGATCTGACTTATCTAGCGTGCTAGTGGCGTC
*
68751052 TATCGTTCTCTTTTGAACTTATCACCTTGCTTTGGTGTGGCGTTCAACCTTCTACAATTCCGCAA
323 TATCGTACTCTTTTGAACTTATCACCTTGCTTTGGTGTGGCGTTCAACCTTCTACAATTCCGCAA
*
68751117 TCCCACCTTGACCGAATAGAAATCGGGGTGACACTTTTAGTGGTGACACTTTTAG
388 TCCCACCTTGAACGAATAGAAATCGGGGTGACACTTTTAGTGGTGACACTTTTAG
68751172 TGCTGCTGGCCATCCGAATTTCCAAGGCTGATTATTGAAGGATATTAAAGATTTTTGATGCCATT
1 TGCTGCTGGCCATCCGAATTTCCAAGGCTGATTATTGAAGGATATTAAAGATTTTTGATGCCATT
*
68751237 GCCGTCCCCAAGGTCTCGGATTCTTCAAAGGAGTGAACTTAGCTCTTAATCTATTTTAGTTCATT
66 GCCGTCCCCAAGGTCTCGGATTCTTCAAAGGAGTGAACTTAGCTCTTAAGCTATTTTAGTTCATT
68751302 AAATTTGCTCATTTAATCTGAATTTTTGTGACCATTCGGTTGGGCAC-AT-A-TATAAATATGTT
131 AAATTTGCTCATTTAATCTGAATTTTTGTGACCATTCGGTTGGGCACTATAACTATAAATATGTT
*
68751364 GTAAATGGCTTGTTGAAGGGACTTTTGACTTTTGATCATTTGAATGAACTTTGTTCAAAGAGTTA
196 GTAAATGGCTTGTTGAAGGGACTTTTGACTTTTGATCATTTGAATGAACTTTGTTCAAAGAGTGA
68751429 GTTTTCTCCTCTCTAAATTCGTACGAGTTTCGATCTGACTTATCTAGCGTGCTAGTGGCGTCTAT
261 GTTTTCTCCTCTCTAAATTCGTACGAGTTTCGATCTGACTTATCTAGCGTGCTAGTGGCGTCTAT
68751494 CGTACTCTTTTGAACTTATCACCTTGCTTTGGTGTGGCGTTCAACCTTCTACAATTCCGCAATCC
326 CGTACTCTTTTGAACTTATCACCTTGCTTTGGTGTGGCGTTCAACCTTCTACAATTCCGCAATCC
68751559 CACCTTGAACGAATAGAAATCGGGGTGACACTTTTAGTG
391 CACCTTGAACGAATAGAAATCGGGGTGACACTTTTAGTG
68751598 TTGAATCGTT
Statistics
Matches: 422, Mismatches: 4, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
439 243 0.58
440 1 0.00
442 2 0.00
445 176 0.42
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (442 bp):
TGCTGCTGGCCATCCGAATTTCCAAGGCTGATTATTGAAGGATATTAAAGATTTTTGATGCCATT
GCCGTCCCCAAGGTCTCGGATTCTTCAAAGGAGTGAACTTAGCTCTTAAGCTATTTTAGTTCATT
AAATTTGCTCATTTAATCTGAATTTTTGTGACCATTCGGTTGGGCACTATAACTATAAATATGTT
GTAAATGGCTTGTTGAAGGGACTTTTGACTTTTGATCATTTGAATGAACTTTGTTCAAAGAGTGA
GTTTTCTCCTCTCTAAATTCGTACGAGTTTCGATCTGACTTATCTAGCGTGCTAGTGGCGTCTAT
CGTACTCTTTTGAACTTATCACCTTGCTTTGGTGTGGCGTTCAACCTTCTACAATTCCGCAATCC
CACCTTGAACGAATAGAAATCGGGGTGACACTTTTAGTGGTGACACTTTTAG
Found at i:68752142 original size:11 final size:12
Alignment explanation
Indices: 68752119--68752157 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
68752109 AAGAGAGAAG
68752119 AAATTCAAAAAA
1 AAATTCAAAAAA
68752131 AAATTCAAAAAA
1 AAATTCAAAAAA
68752143 AAA-TCGAAAAAA
1 AAATTC-AAAAAA
68752155 AAA
1 AAA
68752158 GGAAAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 2 0.08
12 24 0.92
ACGTcount: A:0.77, C:0.08, G:0.03, T:0.13
Consensus pattern (12 bp):
AAATTCAAAAAA
Found at i:68753219 original size:15 final size:15
Alignment explanation
Indices: 68753180--68753227 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
68753170 AAATTGAGAG
68753180 AAGAAA-AAAAG-AA
1 AAGAAATAAAAGAAA
* *
68753193 ATGAGATAAAAAGAAA
1 AAGAAAT-AAAAGAAA
68753209 AAGAAATAAAAGAAA
1 AAGAAATAAAAGAAA
68753224 AAGA
1 AAGA
68753228 TGAAAATGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 4 0.14
15 17 0.61
16 7 0.25
ACGTcount: A:0.77, C:0.00, G:0.17, T:0.06
Consensus pattern (15 bp):
AAGAAATAAAAGAAA
Found at i:68753224 original size:21 final size:21
Alignment explanation
Indices: 68753185--68753227 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
68753175 GAGAGAAGAA
* * *
68753185 AAAAAGAAATGAGATAAAAAG
1 AAAAAGAAATAAAAGAAAAAG
68753206 AAAAAGAAATAAAAGAAAAAG
1 AAAAAGAAATAAAAGAAAAAG
68753227 A
1 A
68753228 TGAAAATGAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.07
Consensus pattern (21 bp):
AAAAAGAAATAAAAGAAAAAG
Found at i:68761897 original size:222 final size:222
Alignment explanation
Indices: 68761508--68761951 Score: 807
Period size: 222 Copynumber: 2.0 Consensus size: 222
68761498 TTGTTATGCA
*
68761508 ACTTGCAATTTAATCGGGTTAGGATCTAAATTGAGCATGCACATTTCAATTATGTGTCCATTAGC
1 ACTTGCAATTTAATCGGGTTAAGATCTAAATTGAGCATGCACATTTCAATTATGTGTCCATTAGC
* * *
68761573 TGTCATCTGGTTAGGATCACTCAGCTAATTTAGGTGCATTTCAATCACGTACGAACGAAATACAG
66 CGTCATCTGGTTAGGATCACTCAGCTAATTCAGGTGCATTTCAATCACATACGAACGAAATACAG
*
68761638 ACTTGATTTTAATTGAAAACATGATCGACTGAGGCACAAATATTATAAGCATGAATCAAATAAAT
131 ACTTGATTTTAATTGAAAACATGATCGACTAAGGCACAAATATTATAAGCATGAATCAAATAAAT
68761703 ATTATTCAATCAAAATAATCATCCTAG
196 ATTATTCAATCAAAATAATCATCCTAG
*
68761730 ACTTGCAATTTAATCGGGTTAAGATCTAAATTGAGCATGCACATTTCAATTATGTGTTCATTAGC
1 ACTTGCAATTTAATCGGGTTAAGATCTAAATTGAGCATGCACATTTCAATTATGTGTCCATTAGC
* * *
68761795 CGTCGTTTGGTTAGGATCGCTCAGCTAATTCAGGTGCATTTCAATCACATACGAACGAAATACAG
66 CGTCATCTGGTTAGGATCACTCAGCTAATTCAGGTGCATTTCAATCACATACGAACGAAATACAG
68761860 ACTTGATTTTAATTGAAAACATGATCGACTAAGGCACAAATATTATAAGCATGAATCAAATAAAT
131 ACTTGATTTTAATTGAAAACATGATCGACTAAGGCACAAATATTATAAGCATGAATCAAATAAAT
68761925 ATTATTCAATCAAAATAATCATCCTAG
196 ATTATTCAATCAAAATAATCATCCTAG
68761952 CTTAAATAAA
Statistics
Matches: 213, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
222 213 1.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.32
Consensus pattern (222 bp):
ACTTGCAATTTAATCGGGTTAAGATCTAAATTGAGCATGCACATTTCAATTATGTGTCCATTAGC
CGTCATCTGGTTAGGATCACTCAGCTAATTCAGGTGCATTTCAATCACATACGAACGAAATACAG
ACTTGATTTTAATTGAAAACATGATCGACTAAGGCACAAATATTATAAGCATGAATCAAATAAAT
ATTATTCAATCAAAATAATCATCCTAG
Found at i:68767000 original size:171 final size:171
Alignment explanation
Indices: 68766715--68767053 Score: 615
Period size: 171 Copynumber: 2.0 Consensus size: 171
68766705 CCCATGAAAC
* * *
68766715 CCCAATCGATATTTGAATTATGTTTCAGCATCATTTCTACCATATTTTGCATTGAATGTCGAAAA
1 CCCAATCAATATTTGAATTATGTTTCAGCATCATTTCTACCATATTTTGCATTGAACGTCAAAAA
* ** *
68766780 TTATTATGCAGGTCTGGAGGATACGTTAACACCGTGATGCACTCATTCACAATATTGCTTAGTGA
66 TTATTATGCAGGTCTGGAGGATACGGTAACACCACGATGCACTCATTCACAATATTGCTCAGTGA
68766845 CTTGACAGTGGCCCCATCACCCTCGATGATGCCATTGCCAT
131 CTTGACAGTGGCCCCATCACCCTCGATGATGCCATTGCCAT
68766886 CCCAATCAATATTTGAATTATGTTTCAGCATCATTTCTACCATATTTTGCATTGAACGTCAAAAA
1 CCCAATCAATATTTGAATTATGTTTCAGCATCATTTCTACCATATTTTGCATTGAACGTCAAAAA
68766951 TTATTATGCAGGTCTGGAGGATACGGTAACACCACGATGCACTCATTCACAATATTGCTCAGTGA
66 TTATTATGCAGGTCTGGAGGATACGGTAACACCACGATGCACTCATTCACAATATTGCTCAGTGA
68767016 CTTGACAGTGGCCCCATCACCCTCGATGATGCCATTGC
131 CTTGACAGTGGCCCCATCACCCTCGATGATGCCATTGC
68767054 TGTTGGCAAT
Statistics
Matches: 161, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
171 161 1.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.32
Consensus pattern (171 bp):
CCCAATCAATATTTGAATTATGTTTCAGCATCATTTCTACCATATTTTGCATTGAACGTCAAAAA
TTATTATGCAGGTCTGGAGGATACGGTAACACCACGATGCACTCATTCACAATATTGCTCAGTGA
CTTGACAGTGGCCCCATCACCCTCGATGATGCCATTGCCAT
Found at i:68768634 original size:27 final size:27
Alignment explanation
Indices: 68768604--68768781 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
68768594 ATATTGAGTC
* * * *
68768604 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
68768631 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
68768658 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
68768686 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
68768713 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
68768740 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
68768767 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68768782 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:68768743 original size:82 final size:81
Alignment explanation
Indices: 68768625--68768780 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
68768615 TGCTATATAA
* *
68768625 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
68768690 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
68768707 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
68768771 CACTTAGTGC
65 CACTTAGTGC
68768781 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:68772095 original size:72 final size:72
Alignment explanation
Indices: 68771969--68772123 Score: 283
Period size: 72 Copynumber: 2.1 Consensus size: 72
68771959 ATAGTTAATT
*
68771969 AAAATATATAAGGAAAATTTAAAAGAAATGAAAGTGGTATTATAAAGGCGAGCAAAATTCGAATC
1 AAAATA-AAAAGGAAAATTTAAAAGAAATGAAAGTGGTATTATAAAGGCGAGCAAAATTCGAATC
68772034 AATTAGAA
65 AATTAGAA
*
68772042 AAAGTAAAAAGGAAAATTTAAAAGAAATGAAAGTGGTATTATAAAGGCGAGCAAAATTCGAATCA
1 AAAATAAAAAGGAAAATTTAAAAGAAATGAAAGTGGTATTATAAAGGCGAGCAAAATTCGAATCA
68772107 ATTAGAA
66 ATTAGAA
68772114 AAAATAAAAA
1 AAAATAAAAA
68772124 AAATGAATTT
Statistics
Matches: 79, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
72 74 0.94
73 5 0.06
ACGTcount: A:0.56, C:0.05, G:0.17, T:0.21
Consensus pattern (72 bp):
AAAATAAAAAGGAAAATTTAAAAGAAATGAAAGTGGTATTATAAAGGCGAGCAAAATTCGAATCA
ATTAGAA
Found at i:68772355 original size:20 final size:19
Alignment explanation
Indices: 68772326--68772383 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
68772316 ACAAAAATTA
*
68772326 AAAAAATCAAAATAATTT-T
1 AAAAATTCAAAAT-ATTTAT
68772345 CAAAAATTCAAAATATTTAT
1 -AAAAATTCAAAATATTTAT
*
68772365 AAAAATTCCAAA-ATTTAT
1 AAAAATTCAAAATATTTAT
68772383 A
1 A
68772384 TTTTAAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.20
19 15 0.43
20 13 0.37
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAAATTCAAAATATTTAT
Found at i:68772362 original size:19 final size:20
Alignment explanation
Indices: 68772326--68772378 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
68772316 ACAAAAATTA
*
68772326 AAAAAATCAAAATAATTT-T
1 AAAAATTCAAAATAATTTAT
68772345 CAAAAATTCAAAAT-ATTTAT
1 -AAAAATTCAAAATAATTTAT
68772365 AAAAATTCCAAAAT
1 AAAAATT-CAAAAT
68772379 TTATATTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 11 0.37
20 19 0.63
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.30
Consensus pattern (20 bp):
AAAAATTCAAAATAATTTAT
Found at i:68772368 original size:18 final size:18
Alignment explanation
Indices: 68772317--68772383 Score: 59
Period size: 19 Copynumber: 3.7 Consensus size: 18
68772307 TCTCTCTCAA
*
68772317 CAAAAA-TTA-AAAAAAT
1 CAAAAATTTATAAAAATT
68772333 CAAAATAATTT-TCAAAAATT
1 C-AAA-AATTTAT-AAAAATT
68772353 CAAAATATTTATAAAAATT
1 CAAAA-ATTTATAAAAATT
*
68772372 CCAAAATTTATA
1 CAAAAATTTATA
68772384 TTTTAAAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
16 1 0.02
17 3 0.07
18 10 0.24
19 20 0.48
20 8 0.19
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.31
Consensus pattern (18 bp):
CAAAAATTTATAAAAATT
Found at i:68781962 original size:24 final size:23
Alignment explanation
Indices: 68781931--68781975 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
68781921 ATATTTTTTC
*
68781931 TTTTGTTTGTCGCTTGACACGGG
1 TTTTGTTTGTCGCTTCACACGGG
68781954 TTTTCGTTTGTCGCTTCACACG
1 TTTT-GTTTGTCGCTTCACACG
68781976 AGTCTATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.09, C:0.22, G:0.24, T:0.44
Consensus pattern (23 bp):
TTTTGTTTGTCGCTTCACACGGG
Found at i:68782705 original size:16 final size:17
Alignment explanation
Indices: 68782674--68782706 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
68782664 TTCATAAGTA
68782674 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
68782691 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
68782707 GCTCCATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:68783266 original size:46 final size:46
Alignment explanation
Indices: 68783002--68783264 Score: 368
Period size: 46 Copynumber: 5.7 Consensus size: 46
68782992 TGCCATAATG
* *
68783002 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCA-TTTCATATCATGTTGCCATGGTA
* * *
68783048 TCTTTCAACCATGGTCTTATTCATTTCTTATCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCATGTTGCCATGGTA
* ***
68783094 TCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCATGTTGCCATGGTA
* *
68783140 TCTTTCAACCATGGTCTTATTCATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCATGTTGCCATGGTA
*
68783186 TCTTTCAACCATGGTCTTACACATTTCATATCA-GATTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCATG-TTGCCATGGTA
* *
68783232 TCTTTCAACCATGGTTTTACACATTTCATATCA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCA
68783265 GAGAGCACAC
Statistics
Matches: 200, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
45 5 0.03
46 195 0.98
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.42
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACTCATTTCATATCATGTTGCCATGGTA
Found at i:68783982 original size:3 final size:3
Alignment explanation
Indices: 68783974--68783999 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
68783964 ATATATATTT
68783974 TCC TCC TCC TCC TCC TCC TCC TCC TC
1 TCC TCC TCC TCC TCC TCC TCC TCC TC
68784000 TCCATTCCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35
Consensus pattern (3 bp):
TCC
Found at i:68785454 original size:30 final size:30
Alignment explanation
Indices: 68785387--68785454 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
68785377 CACCCTTAAA
* * *
68785387 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
68785417 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
68785446 AGTATTTAC
1 A-TATTTAC
68785455 TTTTGGACCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:68790594 original size:45 final size:44
Alignment explanation
Indices: 68790523--68790723 Score: 149
Period size: 45 Copynumber: 4.5 Consensus size: 44
68790513 GTTCAGAAGA
* * * *
68790523 TGCCATGGTATCTTTCAACCAGGGTCTTACACAATCTCAAGGTGG
1 TGCCATAGTATCTTTCAACTAGGGTCTTACTC-ATCTCAAGGTAG
* * *** *
68790568 TGCCATAGTATCTTTCAACTATGGTCTTGATTCAT-TCACCTTTAA
1 TGCCATAGTATCTTTCAACTAGGGTCTT-ACTCATCTCA-AGGTAG
* *
68790613 TGCCATAGTATCTTTCAACTATGGTCTTATTCATCTTC-AGGTATAG
1 TGCCATAGTATCTTTCAACTAGGGTCTTACTCATC-TCAAGG--TAG
* * * * *
68790659 TGCCGTAGTATCTTTCAACTAGGGTCTTACCCGT-TC-TGGTTTAA
1 TGCCATAGTATCTTTCAACTAGGGTCTTACTCATCTCAAGG--TAG
68790703 TGCCATAGTATCTTTCAACTA
1 TGCCATAGTATCTTTCAACTA
68790724 TTGTCTTTCT
Statistics
Matches: 127, Mismatches: 23, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
44 36 0.28
45 56 0.44
46 35 0.28
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.38
Consensus pattern (44 bp):
TGCCATAGTATCTTTCAACTAGGGTCTTACTCATCTCAAGGTAG
Found at i:68790702 original size:90 final size:90
Alignment explanation
Indices: 68790567--68790765 Score: 258
Period size: 90 Copynumber: 2.2 Consensus size: 90
68790557 TCTCAAGGTG
* **
68790567 GTGCCATAGTATCTTTCAACTATGGTCTTGATTCATTCACCTTTAATGCCATAGTATCTTTCAAC
1 GTGCCATAGTATCTTTCAACTAGGGTCTTGACCCATTCACCTTTAATGCCATAGTATCTTTCAAC
68790632 TATGGTCTTAT-TCATCTTCAGGTATA
66 TATGGTCTT-TCTCAT-TTCAGGTATA
* * ***
68790658 GTGCCGTAGTATCTTTCAACTAGGGTCTT-ACCCGTTCTGGTTTAATGCCATAGTATCTTTCAAC
1 GTGCCATAGTATCTTTCAACTAGGGTCTTGACCCATTCACCTTTAATGCCATAGTATCTTTCAAC
* *
68790722 TATTGTCTTTCTCATTTCGGGTATA
66 TATGGTCTTTCTCATTTCAGGTATA
* *
68790747 ATGCCATAATATCTTTCAA
1 GTGCCATAGTATCTTTCAA
68790766 TCATGGTCTT
Statistics
Matches: 94, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
89 26 0.28
90 41 0.44
91 27 0.29
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.41
Consensus pattern (90 bp):
GTGCCATAGTATCTTTCAACTAGGGTCTTGACCCATTCACCTTTAATGCCATAGTATCTTTCAAC
TATGGTCTTTCTCATTTCAGGTATA
Found at i:68790764 original size:45 final size:45
Alignment explanation
Indices: 68790568--68790784 Score: 219
Period size: 45 Copynumber: 4.8 Consensus size: 45
68790558 CTCAAGGTGG
** *
68790568 TGCCATAGTATCTTTCAACTATGGTCTTGAT-TCA-TTCACCTTTAA
1 TGCCATAGTATCTTTCAACTATGGTCTT--TCTCATTTCAGGTATAA
*
68790613 TGCCATAGTATCTTTCAACTATGGTCTTAT-TCATCTTCAGGTATAG
1 TGCCATAGTATCTTTCAACTATGGTCTT-TCTCAT-TTCAGGTATAA
* * * ** * *
68790659 TGCCGTAGTATCTTTCAACTAGGGTCTTAC-CCGTTCTGGTTTAA
1 TGCCATAGTATCTTTCAACTATGGTCTTTCTCATTTCAGGTATAA
* *
68790703 TGCCATAGTATCTTTCAACTATTGTCTTTCTCATTTCGGGTATAA
1 TGCCATAGTATCTTTCAACTATGGTCTTTCTCATTTCAGGTATAA
* *
68790748 TGCCATAATATCTTTCAA-TCATGGTCTTTCTCGTTTC
1 TGCCATAGTATCTTTCAACT-ATGGTCTTTCTCATTTC
68790785 TCAAATCAAT
Statistics
Matches: 144, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
44 40 0.28
45 71 0.49
46 33 0.23
ACGTcount: A:0.22, C:0.22, G:0.14, T:0.42
Consensus pattern (45 bp):
TGCCATAGTATCTTTCAACTATGGTCTTTCTCATTTCAGGTATAA
Found at i:68794883 original size:19 final size:19
Alignment explanation
Indices: 68794837--68794883 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
68794827 TAATCCTTCA
*
68794837 AAAAATTTGAAAAAATATT
1 AAAAATTTGAAAAAATAAT
68794856 AAAATATTT-AAAAAATACAT
1 AAAA-ATTTGAAAAAATA-AT
68794876 AAAAATTT
1 AAAAATTT
68794884 CCAGACATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 16 0.64
20 9 0.36
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (19 bp):
AAAAATTTGAAAAAATAAT
Found at i:68804461 original size:10 final size:10
Alignment explanation
Indices: 68804446--68804480 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
68804436 AAAATTAACT
68804446 TTTTTATATA
1 TTTTTATATA
*
68804456 TTTTTAGA-A
1 TTTTTATATA
68804465 TTTTTATATA
1 TTTTTATATA
68804475 TTTTTA
1 TTTTTA
68804481 AATTTAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 8 0.36
10 14 0.64
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (10 bp):
TTTTTATATA
Found at i:68804470 original size:19 final size:18
Alignment explanation
Indices: 68804446--68804485 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
68804436 AAAATTAACT
68804446 TTTTTATATATTTTTAGAA
1 TTTTTATATATTTTTA-AA
68804465 TTTTTATATATTTTTAAA
1 TTTTTATATATTTTTAAA
68804483 TTT
1 TTT
68804486 AAAATTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (18 bp):
TTTTTATATATTTTTAAA
Found at i:68804494 original size:18 final size:19
Alignment explanation
Indices: 68804473--68804508 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
68804463 AATTTTTATA
*
68804473 TATTTTTAAATTT-AAAAT
1 TATTTTAAAATTTGAAAAT
68804491 TATTTTAAAATTTGAAAA
1 TATTTTAAAATTTGAAAA
68804509 AAAATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (19 bp):
TATTTTAAAATTTGAAAAT
Done.