Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 203 of 235
Found at i:69137339 original size:25 final size:25
Alignment explanation
Indices: 69137311--69137433 Score: 82
Period size: 25 Copynumber: 5.2 Consensus size: 25
69137301 GAATGAATGT
69137311 GAATAGGTGTATGTGTGATAAGGCC
1 GAATAGGTGTATGTGTGATAAGGCC
** * * *
69137336 GAAT-GG-CCA-ATGTGATGAATG-T
1 GAATAGGTGTATGTGTGAT-AAGGCC
69137358 GAATAGGTGTATGTGTGATAAGGCC
1 GAATAGGTGTATGTGTGATAAGGCC
** * * *
69137383 GAAT-GG-CCA-ATGTGATGAATG-T
1 GAATAGGTGTATGTGTGAT-AAGGCC
69137405 GAATAGGTGTATGTGTGATAAGGCC
1 GAATAGGTGTATGTGTGATAAGGCC
69137430 GAAT
1 GAAT
69137434 GGCCAATGTG
Statistics
Matches: 68, Mismatches: 20, Indels: 20
0.63 0.19 0.19
Matches are distributed among these distances:
22 20 0.29
23 12 0.18
24 12 0.18
25 24 0.35
ACGTcount: A:0.30, C:0.08, G:0.34, T:0.28
Consensus pattern (25 bp):
GAATAGGTGTATGTGTGATAAGGCC
Found at i:69137349 original size:22 final size:22
Alignment explanation
Indices: 69137324--69137445 Score: 68
Period size: 22 Copynumber: 5.3 Consensus size: 22
69137314 TAGGTGTATG
69137324 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ** *
69137346 TGTGATGAATG-TGAATAGGTGTATG
1 TGTGAT-AAGGCCGAAT-GG-CCA-A
69137371 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ** *
69137393 TGTGATGAATG-TGAATAGGTGTATG
1 TGTGAT-AAGGCCGAAT-GG-CCA-A
69137418 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
69137440 TGTGAT
1 TGTGAT
69137446 GAATGTGAAC
Statistics
Matches: 70, Mismatches: 20, Indels: 20
0.64 0.18 0.18
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.30, C:0.10, G:0.34, T:0.27
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:69137742 original size:37 final size:37
Alignment explanation
Indices: 69137686--69137765 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
69137676 CCGGGCTCTA
* * *
69137686 AAGACCCGATGACTGCGTGTGG-GAATTTTGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAG-ATTATGTCCGGGT
*
69137723 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
69137760 AAGACT
1 AAGACT
69137766 TCGTAATAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
Found at i:69144108 original size:27 final size:27
Alignment explanation
Indices: 69144078--69144255 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
69144068 ATATTGAGCC
* *
69144078 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
69144105 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
69144132 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
69144160 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
69144187 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
69144214 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
69144241 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69144256 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 102 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:69144217 original size:82 final size:81
Alignment explanation
Indices: 69144099--69144254 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
69144089 TGCTATATAA
* * *
69144099 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
69144164 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
69144181 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
69144245 CACTTAGTGC
65 CACTTAGTGC
69144255 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 19 0.29
82 47 0.71
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:69147166 original size:46 final size:46
Alignment explanation
Indices: 69147079--69147168 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
69147069 TTATTTGTGT
* * * *
69147079 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATGTAA
1 GCCAATGTAAGACATGCCTGGGACATGCATCGACCTCGAGATGTAA
*
69147125 GCCAATGTAAGACATGCCTGGGACATGCATC-ATCTACGAGATGT
1 GCCAATGTAAGACATGCCTGGGACATGCATCGACCT-CGAGATGT
69147169 GTTAGTGTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
45 2 0.05
46 36 0.95
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (46 bp):
GCCAATGTAAGACATGCCTGGGACATGCATCGACCTCGAGATGTAA
Found at i:69147342 original size:47 final size:47
Alignment explanation
Indices: 69147270--69147393 Score: 221
Period size: 47 Copynumber: 2.6 Consensus size: 47
69147260 TTTCGATAGT
*
69147270 CAGTGTAAGACCATGTCTGGGACATGGCATCGACTTAATGGATAAGC
1 CAGTGTAAGACCATGTTTGGGACATGGCATCGACTTAATGGATAAGC
* *
69147317 CAGTGTAAGACCATGTTTGGTACATGGCATCGACTTAATGGATGAGC
1 CAGTGTAAGACCATGTTTGGGACATGGCATCGACTTAATGGATAAGC
69147364 CAGTGTAAGACCATGTTTGGGACATGGCAT
1 CAGTGTAAGACCATGTTTGGGACATGGCAT
69147394 TGGCATTATA
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (47 bp):
CAGTGTAAGACCATGTTTGGGACATGGCATCGACTTAATGGATAAGC
Found at i:69160178 original size:25 final size:25
Alignment explanation
Indices: 69160140--69160196 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
69160130 AATGTTTTGA
* *
69160140 TATTATGTGATAAATGTTTTATT-GT
1 TATTATGAGATAAATG-CTTATTGGT
*
69160165 TATTATGAGTTAAATGCTTATTGGT
1 TATTATGAGATAAATGCTTATTGGT
69160190 T-TTATGA
1 TATTATGA
69160197 AAGCATAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 11 0.39
25 17 0.61
ACGTcount: A:0.28, C:0.02, G:0.18, T:0.53
Consensus pattern (25 bp):
TATTATGAGATAAATGCTTATTGGT
Found at i:69160436 original size:43 final size:42
Alignment explanation
Indices: 69160345--69160460 Score: 142
Period size: 43 Copynumber: 2.7 Consensus size: 42
69160335 AAAGCCTGAA
* * * ** *
69160345 CTCGTTGAGTGGTCTGGGTTCGTGATATATGTGGCATCCGAG
1 CTCGTTGAGTGGTCTGAGTTCATAATGGATGCGGCATCCGAG
*
69160387 CTCGTTGAGTGGTCTGAGTTCATTATGGATGCGAGCATCCGAG
1 CTCGTTGAGTGGTCTGAGTTCATAATGGATGCG-GCATCCGAG
* *
69160430 CTCGTTGAGTGGCCCGAGTTCATAATGGATG
1 CTCGTTGAGTGGTCTGAGTTCATAATGGATG
69160461 TGATACATGT
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
42 27 0.42
43 37 0.58
ACGTcount: A:0.17, C:0.18, G:0.34, T:0.31
Consensus pattern (42 bp):
CTCGTTGAGTGGTCTGAGTTCATAATGGATGCGGCATCCGAG
Found at i:69174942 original size:68 final size:68
Alignment explanation
Indices: 69174828--69174973 Score: 195
Period size: 68 Copynumber: 2.1 Consensus size: 68
69174818 TTAAGCTGCT
* * * *
69174828 CGAATGTGTTAGATTCATTGTTCAAAGCATCATCATTTATACTGTTTTATTTGGTAAATGTAGCT
1 CGAATGTGTTAAATTCATTGTTCAAAGCATCACCATATATACTGTTTTATTTAGTAAATGTAGCT
69174893 GTC
66 GTC
* * **
69174896 CGAATGTGTTAAATTCATTGTTCGATGCA-CTACCATATATGTTGTTTTATTTAGTAAATGTAGC
1 CGAATGTGTTAAATTCATTGTTCAAAGCATC-ACCATATATACTGTTTTATTTAGTAAATGTAGC
69174960 TGTC
65 TGTC
*
69174964 CGAATCTGTT
1 CGAATGTGTT
69174974 GATTTCACAG
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
67 1 0.01
68 67 0.99
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (68 bp):
CGAATGTGTTAAATTCATTGTTCAAAGCATCACCATATATACTGTTTTATTTAGTAAATGTAGCT
GTC
Found at i:69175363 original size:69 final size:69
Alignment explanation
Indices: 69175174--69175364 Score: 240
Period size: 69 Copynumber: 2.8 Consensus size: 69
69175164 AATTGATGAG
* * * * * * *
69175174 TTGTTATATTAAAAATGTCTTCATTTACGTTCGA-TTTAAATGCTTAATGTGATGTTGTAAAGTG
1 TTGTTATCTTAAAAATGTGTTCATTTAC-ATCAATTTTAAATGCTTAATGTGCTGCTGTAAAGGG
69175238 CTAAT
65 CTAAT
* * * *
69175243 TTGTTATCTTAAAAATGTGTTCACTCACATTAATTTTAGATGCTTAATGTGCTGCTGTAAAGGGC
1 TTGTTATCTTAAAAATGTGTTCATTTACATCAATTTTAAATGCTTAATGTGCTGCTGTAAAGGGC
69175308 TAAT
66 TAAT
* * *
69175312 TTGTTGTCTTGAAAATGTGTTCATTTACATCCATTTTAAATGCTTAATGTGCT
1 TTGTTATCTTAAAAATGTGTTCATTTACATCAATTTTAAATGCTTAATGTGCT
69175365 TTCCAAAAAT
Statistics
Matches: 103, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
68 2 0.02
69 101 0.98
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (69 bp):
TTGTTATCTTAAAAATGTGTTCATTTACATCAATTTTAAATGCTTAATGTGCTGCTGTAAAGGGC
TAAT
Found at i:69178017 original size:104 final size:105
Alignment explanation
Indices: 69177882--69178073 Score: 332
Period size: 104 Copynumber: 1.8 Consensus size: 105
69177872 CAGGGCCAAG
*
69177882 CACACAGGCGTGTGACTTAGTCGTGTGACCCTAAATGTTTACTGACGTCAT-AACAGAGAGTTAC
1 CACACAGGCGTGTGACTTAGTCGTGTGACCCTAAATGTTTACTGACGTCATAAACAAAGAGTTAC
69177946 ACGGGCTGAGGACACGGGCGTGTAAGACCACCTGGCCTAC
66 ACGGGCTGAGGACACGGGCGTGTAAGACCACCTGGCCTAC
* * * *
69177986 CACACGGGCGTGTGACTTGGTCGTGTGACCCTAAATGTTTGCTGATGTCATAAACAAAGAGTTAC
1 CACACAGGCGTGTGACTTAGTCGTGTGACCCTAAATGTTTACTGACGTCATAAACAAAGAGTTAC
69178051 ACGGGCTGAGGACACGGGCGTGT
66 ACGGGCTGAGGACACGGGCGTGT
69178074 GACTGTCCAA
Statistics
Matches: 82, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
104 47 0.57
105 35 0.43
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.22
Consensus pattern (105 bp):
CACACAGGCGTGTGACTTAGTCGTGTGACCCTAAATGTTTACTGACGTCATAAACAAAGAGTTAC
ACGGGCTGAGGACACGGGCGTGTAAGACCACCTGGCCTAC
Found at i:69181394 original size:36 final size:36
Alignment explanation
Indices: 69181347--69181421 Score: 114
Period size: 36 Copynumber: 2.1 Consensus size: 36
69181337 ATCGAATGAG
* * * *
69181347 GCTGATGTGTTTTAAAAACTTTAAAACTCATACCTT
1 GCTGATATGTTTTAAAAACTTCAAAACTCAGACATT
69181383 GCTGATATGTTTTAAAAACTTCAAAACTCAGACATT
1 GCTGATATGTTTTAAAAACTTCAAAACTCAGACATT
69181419 GCT
1 GCT
69181422 TACCTTTTGG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.36
Consensus pattern (36 bp):
GCTGATATGTTTTAAAAACTTCAAAACTCAGACATT
Found at i:69181751 original size:6 final size:6
Alignment explanation
Indices: 69181740--69181801 Score: 61
Period size: 6 Copynumber: 10.2 Consensus size: 6
69181730 TCTCGACCTT
* ** **
69181740 TTTTTC TTTTTC TTTCTC TTTTTC TTTTTC ACTTTC TTTTTC AATTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
*
69181788 ATTTTTA TTTTTC T
1 -TTTTTC TTTTTC T
69181802 CACTTTCTTT
Statistics
Matches: 43, Mismatches: 12, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
6 40 0.93
7 3 0.07
ACGTcount: A:0.08, C:0.18, G:0.00, T:0.74
Consensus pattern (6 bp):
TTTTTC
Found at i:69181775 original size:12 final size:12
Alignment explanation
Indices: 69181760--69181813 Score: 53
Period size: 12 Copynumber: 4.8 Consensus size: 12
69181750 TCTTTCTCTT
69181760 TTTCTTTTTCAC
1 TTTCTTTTTCAC
*
69181772 TTTCTTTTTCAA
1 TTTCTTTTTCAC
69181784 TTTCATTTTT-A-
1 TTTC-TTTTTCAC
*
69181795 -TT-TTTCTCAC
1 TTTCTTTTTCAC
69181805 TTTCTTTTT
1 TTTCTTTTT
69181814 GCTTTGTTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
8 4 0.12
9 1 0.03
10 2 0.06
11 2 0.06
12 20 0.59
13 5 0.15
ACGTcount: A:0.11, C:0.19, G:0.00, T:0.70
Consensus pattern (12 bp):
TTTCTTTTTCAC
Found at i:69184169 original size:14 final size:15
Alignment explanation
Indices: 69184150--69184179 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
69184140 GTTTATTATA
69184150 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
69184164 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
69184179 T
1 T
69184180 CTAAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:69186061 original size:43 final size:43
Alignment explanation
Indices: 69185973--69186137 Score: 192
Period size: 43 Copynumber: 3.9 Consensus size: 43
69185963 AATGTGATAT
* * * * *
69185973 TCGGGCCTC-GGCCTAGCAAGCTTTAA-GCTGGTGAATAATATTA
1 TCGGGCTTCAGGCCTAGCAGGCTATAATGCCGGTG-A-AATAATA
*
69186016 TCGGGCTTCAGGCCTAGCAGGCTATAATGCCGGTGAGATAATA
1 TCGGGCTTCAGGCCTAGCAGGCTATAATGCCGGTGAAATAATA
* *
69186059 TCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAATGATA
1 TCGGGCTTCAGGCCTAGCAGGCTATAATGCCGGTGAAATAATA
* * *
69186102 TTGGGCTTCAAGCCTAGCAGGCGA-AATGCCGGTGAA
1 TCGGGCTTCAGGCCTAGCAGGCTATAATGCCGGTGAA
69186138 TGAGTTCAGA
Statistics
Matches: 107, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
42 12 0.11
43 73 0.68
44 16 0.15
45 6 0.06
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (43 bp):
TCGGGCTTCAGGCCTAGCAGGCTATAATGCCGGTGAAATAATA
Found at i:69186164 original size:41 final size:41
Alignment explanation
Indices: 69186071--69186217 Score: 109
Period size: 40 Copynumber: 3.6 Consensus size: 41
69186061 GGGCTTCGGG
* * * * *
69186071 CCTAGCAGGCTATAATGCCGGTGAAATGATATT-GGGCTTCAAG
1 CCTAACAGGCTA-AATGCCGGTG-AATGA-ATTCAGACTTAAAA
* * * *
69186114 CCTAGCAGGCGAAATGCCGGTGAATGAGTTCAGACTTAAAG
1 CCTAACAGGCTAAATGCCGGTGAATGAATTCAGACTTAAAA
* ** * **
69186155 TCTAACAGGCTTCATGCCGGTG-ATGAATTCGGGTTTAAAA
1 CCTAACAGGCTAAATGCCGGTGAATGAATTCAGACTTAAAA
*
69186195 CCTAGCAGGCTAAATGCCGGTGA
1 CCTAACAGGCTAAATGCCGGTGA
69186218 TTTGATAAAA
Statistics
Matches: 83, Mismatches: 19, Indels: 6
0.77 0.18 0.06
Matches are distributed among these distances:
40 33 0.40
41 29 0.35
42 10 0.12
43 11 0.13
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (41 bp):
CCTAACAGGCTAAATGCCGGTGAATGAATTCAGACTTAAAA
Found at i:69186218 original size:40 final size:41
Alignment explanation
Indices: 69186016--69186217 Score: 185
Period size: 43 Copynumber: 4.9 Consensus size: 41
69186006 AATAATATTA
* *
69186016 TCGGGCTTCAGGCCTAGCAGGCTATAATGCCGGTGAGAT-AAT
1 TCGGGCTTAAAGCCTAGCAGGCTA-AATGCCGGTGA-ATGAAT
***
69186058 ATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAATGATAT
1 -TCGGGCTTAAAGCCTAGCAGGCTA-AATGCCGGTG-AATGA-AT
* * *
69186103 T-GGGCTTCAAGCCTAGCAGGCGAAATGCCGGTGAATGAGT
1 TCGGGCTTAAAGCCTAGCAGGCTAAATGCCGGTGAATGAAT
* * * * **
69186143 TCAGACTTAAAGTCTAACAGGCTTCATGCCGGTG-ATGAAT
1 TCGGGCTTAAAGCCTAGCAGGCTAAATGCCGGTGAATGAAT
* *
69186183 TCGGGTTTAAAACCTAGCAGGCTAAATGCCGGTGA
1 TCGGGCTTAAAGCCTAGCAGGCTAAATGCCGGTGA
69186218 TTTGATAAAA
Statistics
Matches: 132, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
40 33 0.25
41 29 0.22
42 10 0.08
43 55 0.42
44 3 0.02
45 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (41 bp):
TCGGGCTTAAAGCCTAGCAGGCTAAATGCCGGTGAATGAAT
Found at i:69190963 original size:19 final size:20
Alignment explanation
Indices: 69190941--69190984 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
69190931 AAAATATAAT
*
69190941 TTATTTTTATT-TGATTAAA
1 TTATTTTTATTCTAATTAAA
*
69190960 TTATTTTTATTCTAATTATA
1 TTATTTTTATTCTAATTAAA
69190980 TTATT
1 TTATT
69190985 ATAATTATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (20 bp):
TTATTTTTATTCTAATTAAA
Found at i:69197963 original size:11 final size:11
Alignment explanation
Indices: 69197947--69197986 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
69197937 TTTATACTTT
69197947 ATGAATTTTTA
1 ATGAATTTTTA
69197958 ATGAATTTTTA
1 ATGAATTTTTA
* *
69197969 ATAAATTTCTA
1 ATGAATTTTTA
69197980 ATCGAAT
1 AT-GAAT
69197987 CGATTGAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
11 22 0.88
12 3 0.12
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.47
Consensus pattern (11 bp):
ATGAATTTTTA
Found at i:69199505 original size:20 final size:20
Alignment explanation
Indices: 69199480--69199519 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
69199470 ATCTAAAAAC
69199480 TTTATTT-TATGCGATTTTTT
1 TTTATTTCTATGC-ATTTTTT
*
69199500 TTTATTTCTATTCATTTTTT
1 TTTATTTCTATGCATTTTTT
69199520 AATGCAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.15, C:0.07, G:0.05, T:0.72
Consensus pattern (20 bp):
TTTATTTCTATGCATTTTTT
Found at i:69201903 original size:30 final size:30
Alignment explanation
Indices: 69201867--69201965 Score: 162
Period size: 30 Copynumber: 3.3 Consensus size: 30
69201857 CTAGCCTTTG
* *
69201867 CCACCACCAACTCCACTAGCTACAATTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
69201897 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
69201927 CCACTACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
69201957 CCACCACCA
1 CCACCACCA
69201966 CTTGTACCTA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 63 1.00
ACGTcount: A:0.27, C:0.48, G:0.06, T:0.18
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:69201930 original size:18 final size:18
Alignment explanation
Indices: 69201907--69201960 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
69201897 CCACCACCAA
69201907 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
69201925 CTCCACT----AC-C-TA
1 CTCCACTAGCCACACTTG
69201937 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
69201955 CTCCAC
1 CTCCAC
69201961 CACCACTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 8 0.29
13 1 0.04
14 2 0.07
16 2 0.07
17 1 0.04
18 14 0.50
ACGTcount: A:0.22, C:0.48, G:0.07, T:0.22
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:69205966 original size:36 final size:35
Alignment explanation
Indices: 69205926--69205997 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 35
69205916 ACGTTGATGA
69205926 TATGATCGCCAAATCCAAGAGGGAAAGAGAGCATG
1 TATGATCGCCAAATCCAAGAGGGAAAGAGAGCATG
*
69205961 NTATGATCGCCAAATCCAAGGGGGAAAGAGAGCATG
1 -TATGATCGCCAAATCCAAGAGGGAAAGAGAGCATG
69205997 T
1 T
69205998 TGGGAACCTC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
35 1 0.03
36 34 0.97
ACGTcount: A:0.38, C:0.17, G:0.29, T:0.15
Consensus pattern (35 bp):
TATGATCGCCAAATCCAAGAGGGAAAGAGAGCATG
Found at i:69209552 original size:14 final size:13
Alignment explanation
Indices: 69209533--69209568 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
69209523 CGCTGAGGTA
69209533 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
69209546 TTTTTCAAATTCTG
1 -TTTTCAAAATCTG
69209560 TTTTCAAAA
1 TTTTCAAAA
69209569 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.50
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:69209676 original size:75 final size:75
Alignment explanation
Indices: 69209565--69209950 Score: 343
Period size: 75 Copynumber: 4.9 Consensus size: 75
69209555 TTCTGTTTTC
*
69209565 AAAAATCAACTCATATTGCGAGGAGGTGAGTTGAGCCTCAAGACAAGTTGAGGTAT-TCTCAATT
1 AAAAATCAACTCATATTGCGA-GAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATAT-TCAATT
69209629 TCTGTCTTTTAA
64 TCTGTCTTTTAA
* * * ** * * *
69209641 AAAAATCAATTCATATTACGAGAAGTGAGTTGAGCCT-TGGCTCACGTGCTGAGCTATGTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACACGT--TGAGGTATATTCAAT
*
69209705 TTCTATTTTAATGTCTGTTTTTA
63 TTC--------TGTC--TTTTAA
* * * *
69209728 AAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-ATTTTAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATA-TTCAATTT
69209792 CTGT-TTTTCAA
65 CTGTCTTTT-AA
69209803 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATATTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATATTCAATTTC
69209868 TGTCTTTCAAAAAAAATCAA
66 TGTCTTT---------T-AA
* *
69209888 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATATTCAATTTC
69209951 CGTTTGTCAA
Statistics
Matches: 256, Mismatches: 26, Indels: 49
0.77 0.08 0.15
Matches are distributed among these distances:
74 5 0.02
75 82 0.32
76 23 0.09
77 18 0.07
78 1 0.00
83 20 0.08
85 63 0.25
87 42 0.16
88 2 0.01
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (75 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATATTCAATTTC
TGTCTTTTAA
Found at i:69209781 original size:162 final size:159
Alignment explanation
Indices: 69209466--69210507 Score: 741
Period size: 175 Copynumber: 6.3 Consensus size: 159
69209456 TGATGTTTTT
* * *
69209466 ATTTCTGTTTTCAAAAAAATCTACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGCAC--GCTGA
1 ATTTCTGTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGTCACGTGCTGA
** * *
69209529 GGTATTTTCAAAATCTGTTTTTCAAATTCTGTTTTCAAA-AATCAACTCATATTGCGAGGAGGTG
66 GGTATTTTCAATTTCTGATTTTC-AATTCTGTTTTAAAAGAATCAACTCATATTGCGA-GAGGTG
* * *
69209593 AGTTGAGCCTCAAGACAAGTTGAGGTATTCTCA
129 AGTTGAGCCTC-A-ACACGCTGAGGTATTTTCA
* * *
69209626 ATTTCTGTCTTTTAAAAAAATCAATTCATATTACGAGAAGTGAGTTGAGCCTTGGCTCACGTGCT
1 ATTTCTGT-TTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGG-TCACGTGCT
* * *
69209691 GAGCTATGTTCAATTTCT-ATTTT-AATGTCTGTTTTTAAAGAATCAACTCATATTGCGAGAGGT
64 GAGGTATTTTCAATTTCTGATTTTCAAT-TCTGTTTTAAAAGAATCAACTCATATTGCGAGAGGT
69209754 GAGTTGAGCCTCAGGACACGCTGAGGTAATTTT-A
128 GAGTTGAGCCTCA--ACACGCTGAGGT-ATTTTCA
** *
69209788 ATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT--T
1 ATTTCTGTTTTT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGTCACGTGCT
* ****** * *
69209851 GAGGTATATTCAATTTCTG-TCTTTCAA-AAAAAATCAAAAAAATCAACTCATATTGCGAGAGGT
64 GAGGTATTTTCAATTTCTGAT-TTTCAATTCTGTTTTAAAAGAATCAACTCATATTGCGAGAGGT
*
69209914 GAGTTGAGCCTCAAGACGCTGAGGTATTTTCA
128 GAGTTGAGCCTCAACACGCTGAGGTATTTTCA
** * *
69209946 ATTTCCGTTTGTCAATTTATTTTTCAAAAATCCAACTTATATTGCGAGAGGTGAGTTGAGCCTCG
1 ATTT-C---TG------T-TTTTAAAAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTTG
* * *
69210011 GCTCACGTGTTGAGGTATTTTCAATTTCTGCTTTTCAATTTCTACTTTTCAAAAGAATCAACTCA
54 G-TCACGTGCTGAGGTATTTTCAATTTCTGATTTTCAA-TTCT-GTTTT-AAAAGAATCAACTCA
*
69210076 TATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCA
115 TATTGCGAGAGGTGAGTTGAGCCTCAACACGCTGAGGTATTTTCA
** *
69210121 ATTTCCGTTTGTCAATTTATTTTTCAAAAATCCAACTTATATTGCGAGAGGTGAGTTGAGCC---
1 ATTT-C---TG------T-TTTTAAAAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTTG
* * * * * *
69210183 -TCAAGACGCTGAGGTATTTTCAATTTCCG-TTTGTCAATT-TATTTTTCAAA-AATCCAACTTA
54 GTCACG-TGCTGAGGTATTTTCAATTTCTGATTT-TCAATTCT-GTTTTAAAAGAAT-CAACTCA
*
69210244 TATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTC-
115 TATTGCGAGAGGTGAGTTGAGCCTCAACACGCTGAGGTATTTTCA
* * * * * * *** *
69210288 ----CTG-TTGTCAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGTCTCGAGCCATACGCCG
1 ATTTCTGTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTG-GTCACGTGCTG
* *
69210348 AGGTCTTTTCAAATTTTGTTTTCAATTTCTGTTTTTTCAATTTATGCTTTTCAAAA-AATCAACT
65 AGG-----T---A-----TTTTCAATTTCTG-ATTTTCAA-TTCTG-TTTT-AAAAGAATCAACT
** *
69210412 CATATTGCGAGAGGTGAGTTGAGATTCAGGACACGCTGAGGTAATTTCA
113 CATATTGCGAGAGGTGAGTTGAGCCTCA--ACACGCTGAGGTATTTTCA
*
69210461 ATTTATGCTTTTT--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 ATTTCTG-TTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
69210508 ATTCAGGACA
Statistics
Matches: 736, Mismatches: 76, Indels: 123
0.79 0.08 0.13
Matches are distributed among these distances:
150 27 0.04
151 9 0.01
154 7 0.01
155 2 0.00
157 5 0.01
158 16 0.02
159 4 0.01
160 66 0.09
161 52 0.07
162 98 0.13
163 27 0.04
164 17 0.02
167 15 0.02
168 65 0.09
169 50 0.07
170 44 0.06
171 55 0.07
172 17 0.02
174 1 0.00
175 121 0.16
177 35 0.05
179 3 0.00
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (159 bp):
ATTTCTGTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGTCACGTGCTGA
GGTATTTTCAATTTCTGATTTTCAATTCTGTTTTAAAAGAATCAACTCATATTGCGAGAGGTGAG
TTGAGCCTCAACACGCTGAGGTATTTTCA
Found at i:69210047 original size:14 final size:14
Alignment explanation
Indices: 69210028--69210062 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
69210018 TGTTGAGGTA
*
69210028 TTTTCAATTTCTGC
1 TTTTCAATTTCTAC
69210042 TTTTCAATTTCTAC
1 TTTTCAATTTCTAC
69210056 TTTTCAA
1 TTTTCAA
69210063 AAGAATCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.03, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCTAC
Found at i:69210091 original size:175 final size:168
Alignment explanation
Indices: 69209803--69211763 Score: 887
Period size: 146 Copynumber: 11.7 Consensus size: 168
69209793 TGTTTTTCAA
* *
69209803 AAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATATTCAATTT
1 AAAAATCCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAG-CACGTTGAGGTATTTTCAATTT
* ***
69209867 CTGTCTTTCAA--AAAAAATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
65 CTGT-TTTCAATTTAATTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
69209930 CGCTGAGGTATTTTCAATTTCCGTTTGTCAATTTATTTTTC
128 CGCTGAGGTATTTTCAATTTCCGTTTGTCAATTTATTTTTC
*
69209971 AAAAATCCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACGTGTTGAGGTATTTTCAA
1 AAAAATCCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAG--CAC--GTTGAGGTATTTTCAA
*
69210035 TTTCTGCTTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
62 TTTCTG-TTTTCAA-TT-TAATTTTCAAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
69210100 CAAGACGCTGAGGTATTTTCAATTTCCGTTTGTCAATTTATTTTTC
123 CAAGACGCTGAGGTATTTTCAATTTCCGTTTGTCAATTTATTTTTC
*
69210146 AAAAATCCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACGCTGAGGTATTTTCAATTTC
1 AAAAATCCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAGCACGTTGAGGTATTTTCAATTTC
* * *
69210210 CGTTTGTCAATTTATTTTTC-AAAAATCCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
66 TGTTT-TCAATTTAATTTTCAAAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
*
69210274 GCTGAGGTATTTTC-----CTG-TTGTC-----A------
129 GCTGAGGTATTTTCAATTTCCGTTTGTCAATTTATTTTTC
** * * **
69210297 AAAAAT-CAACTCGTATTGCGAGAGGTGAGTTGAGTCTCGAGCCATACGCCGAGGTCTTTTCAAA
1 AAAAATCCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAG-C--ACGTTGAGG-----T---A
*
69210361 TTTTGTTTTCAATTTCTGTTTTTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGG
55 -----TTTTCAATTTCTG--TTTTCAATTTA--ATTTTCAAAAAATCAACTCATATTGCGAGAGG
** * * *
69210426 TGAGTTGAGATTCAGGACACGCTGAGGTAATTTCAA-TT---TATG-C------TTTTT-
111 TGAGTTGAGCCTCA--AGACGCTGAGGTATTTTCAATTTCCGTTTGTCAATTTATTTTTC
* ** * * *
69210474 AAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGATTCAGGACACGCTGAGGTAATTTCAATTT
1 AAAAATCCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAG-CACGTTGAGGTATTTTCAATTT
* * **
69210538 ATG----C----T--TTTT--AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCA
65 CTGTTTTCAATTTAATTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AAG-A
* * * *
69210591 CGCCGAGGTATTTTTAATTTCTGTTTTTCAATTTCTGCTTTTAATTTCTGTTTTTC
128 CGCTGAGGTATTTTCAATTTCCGTTTGTCAA--------TTT-A------TTTTTC
* *
69210647 AAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCTGAGGTATTTTCAATTT
1 AAAAATCCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAA-GCACGTTGAGGTATTTTCAATTT
*
69210711 CTGTTTTTCAATTT-TTTCCTTCCAAATTCTGCTTTTCAAATCAACTCATATTGCGAGAGGTGAG
65 CTG-TTTTCAATTTAATT--TT-CAAA-----------AAATCAACTCATATTGCGAGAGGTGAG
* ** * * **
69210775 TTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCATTTTTTTAATTTATGTTTAAA
115 TTGAGCCTCA--AGACGCTGAGGTATTTTCAA-TTTCCGTTTGTCAATTTAT-TTT-TC
* * *
69210834 AAAAAT-CGACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGATGTATTTTCAATTT
1 AAAAATCCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAA-GCACGTTGAGGTATTTTCAATTT
** * *
69210898 CTG---TC--TTCCA-----AAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACG
65 CTGTTTTCAATTTAATTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACG
* *
69210953 CTGAGGTAATTTCAA-TT---TTTG--------TTTGTC
130 CTGAGGTATTTTCAATTTCCGTTTGTCAATTTATTTTTC
* *
69210980 AAAAAT-CAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAATCCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAG-CACGTTGAGGTATTTTCAATTT
* *
69211044 CTG---TC--TTTCAA-----AAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAACCTCAAGAC
65 CTGTTTTCAATTT-AATTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
** *
69211099 GCTGAGGTAACTTCAA-TT---TTTG------T-TTGTT-
129 GCTGAGGTATTTTCAATTTCCGTTTGTCAATTTATTTTTC
* * * *
69211127 AAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
1 AAAAATCCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAG-CACGTTGAGGTATTTTCAATTT
* *
69211191 ATG----C----T--TTTT--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
65 CTGTTTTCAATTTAATTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA--AGA
* ** * **
69211244 CGCTGAGGTAATTTCAATTTATGCTTT-TTAA---A--AATC
128 CGCTGAGGTATTTTCAATTTCCG-TTTGTCAATTTATTTTTC
* * * * * * * *
69211280 --AACTTCAGCTCATATTGCGAGAGGTGAGTTAAACCTCAAGACAC--TGAGGTGTTTTCCATTT
1 AAAAATCCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAG-CACGTTGAGGTATTTTCAATTT
* ** * *
69211341 TTGTTCTTCAATTTCTGTGTTTCAAAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAGCCTTGA
65 CTGTT-TTCAATTT-AAT-TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-T--
* * * * * * *
69211406 CTCACATGCTGAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTCC
123 C-AAGACGCTGAGGTATTTTCAATTTCCGTTTGTC-AA-TTTATTTTT-C
* * * * *
69211456 AAAAAAAT-CAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGGACACGCTAAGGTATTTTCAAT
1 --AAAAATCCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAG-CACGTTGAGGTATTTTCAAT
* *
69211520 TTCTTTTTTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
63 TTC---TGTTTTCAATTTA-ATTT-TC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* * ** * *
69211585 TCAGGTCACACGCTAAGGTATTTTCAATTGAT-TTTTTTTCTAATTTATGCTTTGC
122 TCA----AGACGCTGAGGTATTTTCAATT--TCCGTTTGTC-AATTTAT--TTTTC
* * * * ** * * *
69211640 AGAAAT-CAACTCATATTACGAGAGGTGAGTTTAGCCTCGGGTCACATACCGAGGTATTTTCAAA
1 AAAAATCCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAG-CACGT--TGAGGTATTTTCAAT
* ** * *
69211704 ATCTGTTTTACATATTTTGTTTT--AAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCT
63 TTCTGTTTT-CA-ATTTAATTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
69211764 TGGCTCACGT
Statistics
Matches: 1457, Mismatches: 154, Indels: 354
0.74 0.08 0.18
Matches are distributed among these distances:
144 38 0.03
145 1 0.00
146 135 0.09
147 132 0.09
148 8 0.01
150 49 0.03
151 13 0.01
152 37 0.03
154 8 0.01
155 1 0.00
156 4 0.00
157 1 0.00
159 4 0.00
161 18 0.01
162 18 0.01
163 40 0.03
166 34 0.02
167 20 0.01
168 91 0.06
169 47 0.03
170 41 0.03
171 57 0.04
172 22 0.02
173 63 0.04
174 10 0.01
175 131 0.09
176 2 0.00
177 37 0.03
178 36 0.02
179 35 0.02
180 4 0.00
181 22 0.02
182 50 0.03
183 79 0.05
184 27 0.02
185 7 0.00
186 3 0.00
187 64 0.04
188 2 0.00
191 1 0.00
192 3 0.00
199 51 0.04
200 11 0.01
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (168 bp):
AAAAATCCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAGCACGTTGAGGTATTTTCAATTTC
TGTTTTCAATTTAATTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGC
TGAGGTATTTTCAATTTCCGTTTGTCAATTTATTTTTC
Found at i:69210210 original size:84 final size:83
Alignment explanation
Indices: 69209803--69210287 Score: 643
Period size: 84 Copynumber: 5.7 Consensus size: 83
69209793 TGTTTTTCAA
* *
69209803 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATATTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ACGCTGAGGTATTTTCAATTTC
* *** ** ***
69209868 TGTCTT-TCAAAAAAAATCAA
64 CGT-TTGTCAATTTATTTTTC
69209888 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTCCG
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTCCG
69209953 TTTGTCAATTTATTTTTC
66 TTTGTCAATTTATTTTTC
* * *
69209971 AAAAATCCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACGTGTTGAGGTATTTTCAA
1 AAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---AC--GCTGAGGTATTTTCAA
* *
69210035 TTTCTGCTTT-TCAATTTCTACTTTTC
60 TTTCCG-TTTGTCAA-TT-TATTTTTC
69210061 AAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTC
1 -AAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTC
69210126 CGTTTGTCAATTTATTTTTC
64 CGTTTGTCAATTTATTTTTC
*
69210146 AAAAATCCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTCC
1 AAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTCC
69210211 GTTTGTCAATTTATTTTTC
65 GTTTGTCAATTTATTTTTC
*
69210230 AAAAATCCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTC
1 AAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTC
69210288 CTGTTGTCAA
Statistics
Matches: 363, Mismatches: 22, Indels: 31
0.87 0.05 0.07
Matches are distributed among these distances:
82 2 0.01
83 38 0.10
84 168 0.46
85 48 0.13
86 7 0.02
87 24 0.07
88 24 0.07
89 7 0.02
90 7 0.02
91 34 0.09
92 4 0.01
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (83 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTCCG
TTTGTCAATTTATTTTTC
Found at i:69210247 original size:259 final size:258
Alignment explanation
Indices: 69209783--69210268 Score: 787
Period size: 259 Copynumber: 1.9 Consensus size: 258
69209773 GCTGAGGTAA
**
69209783 TTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
1 TTTTAATTTCTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA-AC
* *
69209848 GTTGAGGTATATTCAATTTCTGTCTTTCAAAAAAAATCAAAAAAATCAACTCATATTGCGAGAGG
65 GCTGAGGTATATTCAATTTCCGTCTTTCAAAAAAAATCAAAAAAATCAACTCATATTGCGAGAGG
69209913 TGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTCCGTTTGTCAATTTATTTTTCAAAAATC
130 TGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTCCGTTTGTCAATTTATTTTTCAAAAATC
69209978 CAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACGTGTTGAGGTATTTTCAATTTCTGC
195 CAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACGTGTTGAGGTATTTTCAATTTCTGC
*
69210042 TTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-AC
1 TTTT-AATTTCTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAAC
* *** ** *** *
69210106 GCTGAGGTATTTTCAATTTCCGT-TTGTCAATTTATTTTTCAAAAATCCAACTTATATTGCGAGA
65 GCTGAGGTATATTCAATTTCCGTCTT-TCAAAAAAAATCAAAAAAAT-CAACTCATATTGCGAGA
69210170 GGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTCCGTTTGTCAATTTATTTTTCAAAAA
128 GGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTCCGTTTGTCAATTTATTTTTCAAAAA
69210235 TCCAACTTATATTGCGAGAGGTGAGTTGAGCCTC
193 TCCAACTTATATTGCGAGAGGTGAGTTGAGCCTC
69210269 AAGACGCTGA
Statistics
Matches: 209, Mismatches: 15, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
257 2 0.01
258 34 0.16
259 119 0.57
260 54 0.26
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (258 bp):
TTTTAATTTCTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAACG
CTGAGGTATATTCAATTTCCGTCTTTCAAAAAAAATCAAAAAAATCAACTCATATTGCGAGAGGT
GAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTCCGTTTGTCAATTTATTTTTCAAAAATCC
AACTTATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACGTGTTGAGGTATTTTCAATTTCTGC
Found at i:69210610 original size:73 final size:73
Alignment explanation
Indices: 69210382--69210580 Score: 371
Period size: 73 Copynumber: 2.7 Consensus size: 73
69210372 ATTTCTGTTT
*
69210382 TTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGATTCAGGACACG
1 TTTCAATTTATGCTTTT-TAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGATTCAGGACACG
69210447 CTGAGGTAA
65 CTGAGGTAA
69210456 TTTCAATTTATGCTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGATTCAGGACACGC
1 TTTCAATTTATGCTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGATTCAGGACACGC
69210521 TGAGGTAA
66 TGAGGTAA
*
69210529 TTTCAATTTATGCTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGCTGAG
1 TTTCAATTTATGCTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
69210581 CCTCGGGGCA
Statistics
Matches: 123, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
73 106 0.86
74 17 0.14
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.33
Consensus pattern (73 bp):
TTTCAATTTATGCTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGATTCAGGACACGC
TGAGGTAA
Found at i:69210645 original size:13 final size:13
Alignment explanation
Indices: 69210601--69210645 Score: 72
Period size: 13 Copynumber: 3.4 Consensus size: 13
69210591 CGCCGAGGTA
69210601 TTTTTAATTTCTG
1 TTTTTAATTTCTG
69210614 TTTTTCAATTTCTG
1 TTTTT-AATTTCTG
*
69210628 CTTTTAATTTCTG
1 TTTTTAATTTCTG
69210641 TTTTT
1 TTTTT
69210646 CAAAAATCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 17 0.59
14 12 0.41
ACGTcount: A:0.13, C:0.11, G:0.07, T:0.69
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:69210668 original size:100 final size:101
Alignment explanation
Indices: 69210532--69210901 Score: 423
Period size: 100 Copynumber: 3.8 Consensus size: 101
69210522 GAGGTAATTT
* * * *
69210532 CAATTTATGCTTTTT-AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGCCG
1 CAATTTCTG-TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTG
* * *
69210596 AGGTATTTTTAATTTCTGTTTTTCAA-TTTCTGCTTT
65 AGGTATTTTCAATTTCTGTTTTTCAATTTTCTCCTTC
* *
69210632 TAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCTGA
1 CAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
*
69210697 GGTATTTTCAATTTCTGTTTTTCAATTTTTTCCTTC
66 GGTATTTTCAATTTCTGTTTTTCAATTTTCTCCTTC
* * *
69210733 CAAATTCTGCTTTTC--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
1 CAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
69210796 GGTATTTTCAA-------TTTTC-ATTTT-T--TT-
66 GGTATTTTCAATTTCTGTTTTTCAATTTTCTCCTTC
* *** * * *
69210820 -AATTTATGTTTAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGA
1 CAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
*
69210884 TGTATTTTCAATTTCTGT
66 GGTATTTTCAATTTCTGT
69210902 CTTCCAAAAA
Statistics
Matches: 233, Mismatches: 26, Indels: 27
0.81 0.09 0.09
Matches are distributed among these distances:
86 8 0.03
88 56 0.24
90 1 0.00
91 5 0.02
92 5 0.02
99 62 0.27
100 77 0.33
101 19 0.08
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39
Consensus pattern (101 bp):
CAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
GGTATTTTCAATTTCTGTTTTTCAATTTTCTCCTTC
Found at i:69211039 original size:73 final size:72
Alignment explanation
Indices: 69210834--69211351 Score: 580
Period size: 73 Copynumber: 7.0 Consensus size: 72
69210824 TATGTTTAAA
* * * * * *
69210834 AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGATGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTT
*
69210899 TGTCTTCC
66 TGT-TTTC
* *
69210907 AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
69210970 TTTGTTTGTC
64 TTTGTTT-TC
* * * *
69210980 AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTT
69211045 TGTCTTTC
66 TGT-TTTC
* * *
69211053 AAAAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTAACTTCAAT
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAAT
*
69211116 TTTTGTTTGTT
63 TTTTGTTT-TC
* *
69211127 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTT
*
69211192 TGCTTTTT
66 TG-TTTTC
* *
69211200 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTT
*
69211265 TGCTTTTT
66 TG-TTTTC
* * **
69211273 AAAAATCAACTTCAGCTCATATTGCGAGAGGTGAGTTAAACCTCAAGACA--CTGAGGTGTTTTC
1 AAAAATC-A----A-CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTC
*
69211336 CATTTTTGTTCTTC
60 AATTTTTGTT-TTC
69211350 AA
1 AA
69211352 TTTCTGTGTT
Statistics
Matches: 390, Mismatches: 35, Indels: 34
0.85 0.08 0.07
Matches are distributed among these distances:
71 76 0.19
72 2 0.01
73 152 0.39
74 28 0.07
75 38 0.10
76 40 0.10
77 21 0.05
78 1 0.00
79 32 0.08
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (72 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTT
TGTTTTC
Found at i:69211114 original size:147 final size:146
Alignment explanation
Indices: 69210834--69211340 Score: 691
Period size: 147 Copynumber: 3.4 Consensus size: 146
69210824 TATGTTTAAA
* * *
69210834 AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGATGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
* *
69210899 TGTCTTCCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTAATT
66 TGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTAATT
*
69210964 TCAATTTTTGTTTGTC
131 TCAATTTTTGTTTGTT
*
69210980 AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
* *
69211045 TGTCTTTCAAAAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTAAC
66 TGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTAAT
69211110 TTCAATTTTTGTTTGTT
130 TTCAATTTTTGTTTGTT
* * * *
69211127 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
** * *
69211192 TG-CTTT-TTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
66 TGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA--AGACGCTGAGGTAA
*
69211255 TTTCAATTTATGCTTT-TT
129 TTTCAATTTTTG-TTTGTT
* * *
69211273 AAAAATCAACTTCAGCTCATATTGCGAGAGGTGAGTTAAACCTCAAGACAC--TGAGGTGTTTTC
1 AAAAATC-A----A-CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
*
69211336 CATTT
60 AATTT
69211341 TTGTTCTTCA
Statistics
Matches: 324, Mismatches: 27, Indels: 16
0.88 0.07 0.04
Matches are distributed among these distances:
144 37 0.11
146 104 0.32
147 135 0.42
150 14 0.04
151 1 0.00
152 33 0.10
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (146 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
TGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTAATT
TCAATTTTTGTTTGTT
Found at i:69211426 original size:91 final size:88
Alignment explanation
Indices: 69211288--69211764 Score: 395
Period size: 91 Copynumber: 5.3 Consensus size: 88
69211278 TCAACTTCAG
* * * * *
69211288 CTCATATTGCGAGAGGTGAGTTAAACC-TCAAG-ACA--CTGAGGTGTTTTCCATTTTTGTTCTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTTC-AGCACACGCTGAGGTATTTTCAATTTTTGTTTTT
*
69211349 CAATTTCTGTGTTTCAAAAAAATCAG
65 CAATTT-TGT-TTTCAAAAAAATCAA
* * * * * *
69211375 CTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCACATGCTGAGGTATTTTCAAATTCTGTTTTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTTCA-GCACACGCTGAGGTATTTTCAATTTTTGTTTTT
69211440 CAAATTTTGTTTTTCCAAAAAAATCAA
65 C-AATTTTG-TTTT-CAAAAAAATCAA
* * * *
69211467 CTCATATTGCGAGAGGTGAGTTCAGCC-TCAGGACACGCTAAGGTATTTTCAATTTCTTTTTTTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTTCAGCACACGCTGAGGTATTTTCAA-TT-TTTGTTTT
69211531 TCAATTTATGTTTGTCAAAAAAATCAA
64 TCAATTT-TGTTT-TCAAAAAAATCAA
*
69211558 CTCATATTGCGAGAGGTGAGTTGAGCC-TCAGGTCACACGCTAAGGTATTTTCAATTGATTT-TT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTTCA-G-CACACGCTGAGGTATTTTCAATT--TTTGTT
* *
69211621 TTTCTAATTTATGCTTTGC--AGAAATCAA
62 TTTC-AATTT-TG-TTTTCAAAAAAATCAA
* * * ** * ** *
69211649 CTCATATTACGAGAGGTGAGTTTAGCC-TCGGGTCACATACCGAGGTATTTTCAAAATCTGTTTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTTC-AG-CACACGCTGAGGTATTTTCAATTTTTGTTTT
*
69211713 ACATATTTTGTTTT---AAAAATCAA
64 TCA-ATTTTGTTTTCAAAAAAATCAA
* *
69211736 CTCATATTGCGAGAAGTGAGTTAAGCCTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTT
69211765 GGCTCACGTG
Statistics
Matches: 327, Mismatches: 42, Indels: 41
0.80 0.10 0.10
Matches are distributed among these distances:
87 57 0.17
88 5 0.02
89 8 0.02
90 27 0.08
91 133 0.41
92 62 0.19
93 32 0.10
94 3 0.01
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (88 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTTCAGCACACGCTGAGGTATTTTCAATTTTTGTTTTTC
AATTTTGTTTTCAAAAAAATCAA
Found at i:69211458 original size:15 final size:14
Alignment explanation
Indices: 69211422--69211454 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
69211412 TGCTGAGGTA
69211422 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
*
69211436 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
69211450 TTTTC
1 TTTTC
69211455 CAAAAAAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.64
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:69211606 original size:183 final size:176
Alignment explanation
Indices: 69211288--69211763 Score: 450
Period size: 183 Copynumber: 2.7 Consensus size: 176
69211278 TCAACTTCAG
* * * *
69211288 CTCATATTGCGAGAGGTGAGTTAAACCTCAAGACACTGAGGTGTTTTCCATTTTTGTTCTTCAAT
1 CTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACTAAGGTATTTTCAATTTTTGTTCTTCAAT
* * * * * *
69211353 TTCTGTGTTTCAAAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCACATGCTGA
66 TTATGTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGACTCACACGCTAA
*
69211418 GGTATTTTCAA-ATTCTGTTTTTCAAATTT-TGTTTTTCCAAAAAAATCAA
131 GGTATTTTCAATATT-T-TTTTTCAAATTTATG-CTTTCC--AAAAATCAA
* * * *
69211467 CTCATATTGCGAGAGGTGAGTTCAGCCTCAGGACACGCTAAGGTATTTTCAATTTCTTTTTTTTT
1 CTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACA--CTAAGGTATTTTCAA-TT-TTTGTTCTT
*
69211532 CAATTTATGT-TTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-GTCACA
62 CAATTTATGTGTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGACTCACA
* * *
69211595 CGCTAAGGTATTTTCAATTGATTTTTTTTCTAATTTATGCTTTGCAGAAATCAA
125 CGCTAAGGTATTTTCAA-T-ATTTTTTTTCAAATTTATGCTTTCCAAAAATCAA
* * ** * ** *
69211649 CTCATATTACGAGAGGTGAGTTTAGCCTCGGGTCACATACCGAGGTATTTTCAAAATCTGTT-TT
1 CTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACAC-TA---AGGTATTTTCAATTTTTGTTCTT
* *
69211713 ACATATTT-TGT-TTT---AAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCT
62 -CA-ATTTATGTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
69211764 TGGCTCACGT
Statistics
Matches: 252, Mismatches: 29, Indels: 33
0.80 0.09 0.11
Matches are distributed among these distances:
178 35 0.14
179 32 0.13
180 1 0.00
181 17 0.07
182 54 0.21
183 79 0.31
184 28 0.11
185 3 0.01
186 3 0.01
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (176 bp):
CTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACTAAGGTATTTTCAATTTTTGTTCTTCAAT
TTATGTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGACTCACACGCTAA
GGTATTTTCAATATTTTTTTTCAAATTTATGCTTTCCAAAAATCAA
Found at i:69211789 original size:87 final size:87
Alignment explanation
Indices: 69211366--69211848 Score: 365
Period size: 91 Copynumber: 5.4 Consensus size: 87
69211356 TGTGTTTCAA
* * * *
69211366 AAAAATCAGCTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCACATGCTGAGGTATTTTCAAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAG-GTCACATGCTGAGGTATTTTCAAAT
*
69211431 TCTGTTTTTCAAATTTTGTTTTT
65 TCTGTTTTTCATATTTTGTTTTT
* * *
69211454 CCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGG--ACACGCTAAGGTATTTTC
1 ----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGTCACATGCTGAGGTATTTTC
* * *
69211517 AATTTCTTTTTTTTTCA-ATTTATGTTTGTCAA
61 AAATTC--TGTTTTTCATATTT-TGTTT-T--T
* *
69211549 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTAAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGTCACATGCTGAGGTATTTTCAA--
**
69211614 GATT-T-TTTTTC-TAATTTATGCTTTGC
63 -ATTCTGTTTTTCAT-ATTT-TG-TTTTT
* * * * * * *
69211640 AGAAATCAACTCATATTACGAGAGGTGAGTTTAGCCTCGGGTCACATACCGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGTCACATGCTGAGGTATTTTCAAAT
*
69211705 TCTGTTTTACATATTTTG-TTTT
65 TCTGTTTTTCATATTTTGTTTTT
* * * * * * *
69211727 AAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTTGGCTCACGTGCTGAGCTATGTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGG-TCACATGCTGAGGTATTTTCAAAT
* *
69211792 TCT-ATTTT-A-ATGTCTGTTTTT
65 TCTGTTTTTCATAT-TTTGTTTTT
* * **
69211813 AAAGAGTCAATTCATATTGCGAGAAATGAGTTGAGC
1 AAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGC
69211849 TCACGATCAC
Statistics
Matches: 324, Mismatches: 45, Indels: 49
0.78 0.11 0.12
Matches are distributed among these distances:
84 2 0.01
85 4 0.01
86 12 0.04
87 83 0.26
88 2 0.01
89 3 0.01
90 30 0.09
91 100 0.31
92 53 0.16
93 30 0.09
94 3 0.01
96 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (87 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGTCACATGCTGAGGTATTTTCAAATT
CTGTTTTTCATATTTTGTTTTT
Found at i:69212539 original size:30 final size:30
Alignment explanation
Indices: 69212503--69212571 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
69212493 CTAGCCTTTG
*
69212503 CCACCACCAACTCCACTAGCTACAATTGCT
1 CCACCACCAACTCCACTAGCCACAATTGCT
*
69212533 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACAATTGCT
69212563 CCACCACCA
1 CCACCACCA
69212572 CTTGTACCTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.29, C:0.49, G:0.06, T:0.16
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACAATTGCT
Found at i:69214799 original size:15 final size:15
Alignment explanation
Indices: 69214762--69214799 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
69214752 AAGAGATATA
*
69214762 TAATGTAAATCTGAT
1 TAATCTAAATCTGAT
*
69214777 T-TTCTAAATCTGAT
1 TAATCTAAATCTGAT
69214791 TAATCTAAA
1 TAATCTAAA
69214800 CAGAATTCCA
Statistics
Matches: 19, Mismatches: 3, Indels: 2
0.79 0.12 0.08
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.42
Consensus pattern (15 bp):
TAATCTAAATCTGAT
Found at i:69217554 original size:40 final size:40
Alignment explanation
Indices: 69217446--69217530 Score: 152
Period size: 40 Copynumber: 2.1 Consensus size: 40
69217436 CTTGATATAT
*
69217446 TATATATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAA
1 TATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAA
*
69217486 TATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAC
1 TATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAA
69217526 TATAT
1 TATAT
69217531 CCGGGCTTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.33
Consensus pattern (40 bp):
TATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAA
Found at i:69222956 original size:269 final size:270
Alignment explanation
Indices: 69222462--69222997 Score: 921
Period size: 269 Copynumber: 2.0 Consensus size: 270
69222452 CAAGAAGCTT
* *
69222462 TGGGTACTAAGTTGCATTTTAGCACCGCTTTTCATCCCCAGACTGATGGTCAATCCGAGTGGATC
1 TGGGTACCAAGTTGCATTTTAGCACCGCTTTTCATCCCCAGACTGATGGTCAATCCGAGCGGATC
* * *
69222527 ATTCAGATACTCGAGGATATGTTGAGATGTTGCATCCTTGAGTTTAGTGGTTCATGGGAACGGTA
66 ATTCAGATACTCGAGGATATGTTAAGATGTTACATCCTTGAG-TTAGTGGTTCATGGGAACGATA
* *
69222592 TTTTCCTTTGATTGAATTCGCTTACAACAATAGTTTTCAATCAAGAATTAAGATGGCACCTTACG
130 TTTGCCTTTGATTGAATTCGCTTACAACAATAGTTTTCAATCAAGAATTAAGATGGCACCTTACA
69222657 AGGCTTCGTACGGTCGTAAATACCGTACACCGTTGTTTTGGACCGAACTTAGTGAAAATAAAATC
195 AGGCTTCGTACGGTCGTAAATACCGTACACCGTTGTTTTGGACCGAACTTAGTGAAAATAAAATC
*
69222722 TTCGGGGTTCA
260 CTCGGGGTTCA
*
69222733 TGGGTACCAAGTTGCATTTTAGCACCGCTTTTCATCCCTAGACTGATGGTCAATCCGAGCGGATC
1 TGGGTACCAAGTTGCATTTTAGCACCGCTTTTCATCCCCAGACTGATGGTCAATCCGAGCGGATC
*
69222798 ATTTAGATACTCGAGGATATGTTAAGATGTTACATCCTTGA-TTAGTGGTTCATGGGAACGATAT
66 ATTCAGATACTCGAGGATATGTTAAGATGTTACATCCTTGAGTTAGTGGTTCATGGGAACGATAT
**
69222862 TTGCCTTTGATTGAATTCGCTTACAACAATAGTTTTCAATCAATTATTAAGATGGCACCTTACAA
131 TTGCCTTTGATTGAATTCGCTTACAACAATAGTTTTCAATCAAGAATTAAGATGGCACCTTACAA
* * *
69222927 GGCTTTGTACGGTCGTAAATGCCGTACACCGTTGTTTTGGATCGAACTTAGTGAAAATAAAATCC
196 GGCTTCGTACGGTCGTAAATACCGTACACCGTTGTTTTGGACCGAACTTAGTGAAAATAAAATCC
69222992 TCGGGG
261 TCGGGG
69222998 CTGATTTGAT
Statistics
Matches: 250, Mismatches: 15, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
269 150 0.60
271 100 0.40
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.33
Consensus pattern (270 bp):
TGGGTACCAAGTTGCATTTTAGCACCGCTTTTCATCCCCAGACTGATGGTCAATCCGAGCGGATC
ATTCAGATACTCGAGGATATGTTAAGATGTTACATCCTTGAGTTAGTGGTTCATGGGAACGATAT
TTGCCTTTGATTGAATTCGCTTACAACAATAGTTTTCAATCAAGAATTAAGATGGCACCTTACAA
GGCTTCGTACGGTCGTAAATACCGTACACCGTTGTTTTGGACCGAACTTAGTGAAAATAAAATCC
TCGGGGTTCA
Found at i:69231647 original size:164 final size:164
Alignment explanation
Indices: 69231370--69231666 Score: 533
Period size: 164 Copynumber: 1.8 Consensus size: 164
69231360 GGGGGAGAGT
* * **
69231370 TGTGACAGCCCTAATTTGACCCTAGTCGGAAAGTGGTTTCGGGACCACAGAATTGAGTCACAAAA
1 TGTGACAGCCCTAATTTGACCCTAGTCGAAAAGTGGTTTCGGGACCACAAAACCGAGTCACAAAA
*
69231435 ATAATTAACAGTTATATTATATACTTATTCATGTGTAAATGTATGTGTGAAAGTTTTATGCTTTG
66 ATAATTAACAGTTATATTATATACTTATTCATGTGTAAATGCATGTGTGAAAGTTTTATGCTTTG
69231500 ATTATATACTTATTCATGTGTAAATGTATGTGGC
131 ATTATATACTTATTCATGTGTAAATGTATGTGGC
69231534 TGTGACAGCCCTAATTTGACCCTAGTCGAAAAGTGGTTTCGGGACCACAAAACCGAGTCACAAAA
1 TGTGACAGCCCTAATTTGACCCTAGTCGAAAAGTGGTTTCGGGACCACAAAACCGAGTCACAAAA
69231599 ATAATTAATCA-TTATATTATATACTTATTCATGTGTAAATGCATGTGTGAAAGTTTTATGCTTT
66 ATAATTAA-CAGTTATATTATATACTTATTCATGTGTAAATGCATGTGTGAAAGTTTTATGCTTT
69231663 GATT
130 GATT
69231667 TTTGTCATTT
Statistics
Matches: 127, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
164 125 0.98
165 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35
Consensus pattern (164 bp):
TGTGACAGCCCTAATTTGACCCTAGTCGAAAAGTGGTTTCGGGACCACAAAACCGAGTCACAAAA
ATAATTAACAGTTATATTATATACTTATTCATGTGTAAATGCATGTGTGAAAGTTTTATGCTTTG
ATTATATACTTATTCATGTGTAAATGTATGTGGC
Found at i:69232765 original size:294 final size:294
Alignment explanation
Indices: 69232236--69232821 Score: 1145
Period size: 294 Copynumber: 2.0 Consensus size: 294
69232226 AAGAGTTGGT
69232236 GTTGAATTTAAACTCTGATGTTGGAGGGATCCCACATCGGGAAGCTAACATAAGAGTGGATGGGA
1 GTTGAATTTAAACTCTGATGTTGGAGGGATCCCACATCGGGAAGCTAACATAAGAGTGGATGGGA
69232301 AGCTGGCTTTAAATAGAGAGAACCATGAGGAGAGTAAATGTACCTTTCTTGGCTGATCCCTTTCG
66 AGCTGGCTTTAAATAGAGAGAACCATGAGGAGAGTAAATGTACCTTTCTTGGCTGATCCCTTTCG
69232366 CTTTATGGCGTGCTCGTTTGGGTTAGGCGTCAGCTAAGAGTGCTCGGAGCGTGGATTAACTCCAG
131 CTTTATGGCGTGCTCGTTTGGGTTAGGCGTCAGCTAAGAGTGCTCGGAGCGTGGATTAACTCCAG
69232431 TCTCCAATCAGGTGTGTATTTATCACTACTCTTGTTGTTGGATGGCTACTTCAGGCCGCGATGGG
196 TCTCCAATCAGGTGTGTATTTATCACTACTCTTGTTGTTGGATGGCTACTTCAGGCCGCGATGGG
*
69232496 CCGAAGGGGGCCATGTGGGCCCAATGGGCCTATG
261 CCGAAAGGGGCCATGTGGGCCCAATGGGCCTATG
69232530 GTTGAATTTAAACTCTGATGTTGGAGGGATCCCACATCGGGAAGCTAACATAAGAGTGGATGGGA
1 GTTGAATTTAAACTCTGATGTTGGAGGGATCCCACATCGGGAAGCTAACATAAGAGTGGATGGGA
69232595 AGCTGGCTTTAAATAGAGAGAACCATGAGGAGAGTAAATGTACCTTTCTTGGCTGATCCCTTTCG
66 AGCTGGCTTTAAATAGAGAGAACCATGAGGAGAGTAAATGTACCTTTCTTGGCTGATCCCTTTCG
69232660 CTTTATGGCGTGCTCGTTTGGGTTAGGCGTCAGCTAAGAGTGCTCGGAGCGTGGATTAACTCCAG
131 CTTTATGGCGTGCTCGTTTGGGTTAGGCGTCAGCTAAGAGTGCTCGGAGCGTGGATTAACTCCAG
*
69232725 TCTCCAATCAGGTGTGTATTTATCACTACTCTTGTTGTTGGATGGCTACTTCGGGCCGCGATGGG
196 TCTCCAATCAGGTGTGTATTTATCACTACTCTTGTTGTTGGATGGCTACTTCAGGCCGCGATGGG
*
69232790 CCGAAAGGGGTCATGTGGGCCCAATGGGCCTA
261 CCGAAAGGGGCCATGTGGGCCCAATGGGCCTA
69232822 CGGGCCCAAT
Statistics
Matches: 289, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
294 289 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (294 bp):
GTTGAATTTAAACTCTGATGTTGGAGGGATCCCACATCGGGAAGCTAACATAAGAGTGGATGGGA
AGCTGGCTTTAAATAGAGAGAACCATGAGGAGAGTAAATGTACCTTTCTTGGCTGATCCCTTTCG
CTTTATGGCGTGCTCGTTTGGGTTAGGCGTCAGCTAAGAGTGCTCGGAGCGTGGATTAACTCCAG
TCTCCAATCAGGTGTGTATTTATCACTACTCTTGTTGTTGGATGGCTACTTCAGGCCGCGATGGG
CCGAAAGGGGCCATGTGGGCCCAATGGGCCTATG
Found at i:69239534 original size:27 final size:27
Alignment explanation
Indices: 69239503--69239680 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
69239493 TAAATTGTAC
69239503 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
69239530 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * **
69239556 ATGCACTAAGTGTGCGAATTGACCATAC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
69239584 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
69239612 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
69239639 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
69239666 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
69239681 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:69239671 original size:82 final size:81
Alignment explanation
Indices: 69239500--69239680 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
69239490 GATTAAATTG
* *
69239500 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
69239565 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* ** *
69239581 TACGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
69239645 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
69239663 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
69239681 GACTCAATAT
Statistics
Matches: 86, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
81 19 0.22
82 67 0.78
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:69241839 original size:16 final size:16
Alignment explanation
Indices: 69241814--69241846 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
69241804 CCTGTGTTAA
*
69241814 ATTGATAGGTTTGCCC
1 ATTGACAGGTTTGCCC
69241830 ATTGACAGGTTTGCCC
1 ATTGACAGGTTTGCCC
69241846 A
1 A
69241847 CGATTTCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.33
Consensus pattern (16 bp):
ATTGACAGGTTTGCCC
Found at i:69253747 original size:40 final size:40
Alignment explanation
Indices: 69253669--69253846 Score: 227
Period size: 40 Copynumber: 4.5 Consensus size: 40
69253659 AAACCAAGTA
* *
69253669 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
69253708 CCTTCGGGACTTAGCCCGGTTATAGTAACTCCCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69253748 CCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
69253788 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
69253828 CCTGCGAGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
69253847 TTATCATCCG
Statistics
Matches: 122, Mismatches: 14, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
39 15 0.12
40 107 0.88
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:69258743 original size:5 final size:5
Alignment explanation
Indices: 69258733--69258778 Score: 51
Period size: 5 Copynumber: 9.0 Consensus size: 5
69258723 AGAGAAAGAA
69258733 AAATT AAATT -AA-T AAATAGT AAAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAAT--T -AAATT AAATT AAATT AAATT AAATT
69258779 GCAAGAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
3 1 0.03
4 4 0.11
5 25 0.69
6 1 0.03
7 1 0.03
8 4 0.11
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (5 bp):
AAATT
Found at i:69272098 original size:23 final size:23
Alignment explanation
Indices: 69272054--69272177 Score: 103
Period size: 23 Copynumber: 5.3 Consensus size: 23
69272044 AAGCTCCTCC
69272054 TGAGCTGATGAACAGTAAGCTCAAT
1 TGAGCTGA--AACAGTAAGCTCAAT
* *
69272079 TGAGCTGAAACGGTAAGCTCTAT
1 TGAGCTGAAACAGTAAGCTCAAT
*
69272102 CGAGCT--AACAGTAAGCTC-AT
1 TGAGCTGAAACAGTAAGCTCAAT
* **
69272122 ACGAGCTGAAATGGTAAGCTCCAA-
1 -TGAGCTGAAACAGTAAGCT-CAAT
**
69272146 TGAGCTGAAAACAGTAAGCTCTTT
1 TGAGCTG-AAACAGTAAGCTCAAT
69272170 TGAGCTGA
1 TGAGCTGA
69272178 TATATGGTAA
Statistics
Matches: 81, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
20 2 0.02
21 17 0.21
23 35 0.43
24 18 0.22
25 9 0.11
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (23 bp):
TGAGCTGAAACAGTAAGCTCAAT
Found at i:69272151 original size:44 final size:45
Alignment explanation
Indices: 69272064--69272200 Score: 136
Period size: 44 Copynumber: 3.0 Consensus size: 45
69272054 TGAGCTGATG
* *
69272064 AACAGTAAGCTCA-ATTGAGCTGAAACGGTAAGCT-CTATCGAGCT-
1 AACAGTAAGCTCATA-TGAGCTGAAATGGTAAGCTCCAAT-GAGCTA
*
69272108 AACAGTAAGCTCATACGAGCTGAAATGGTAAGCTCCAATGAGCTGAA
1 AACAGTAAGCTCATATGAGCTGAAATGGTAAGCTCCAATGAGCT--A
* * * *
69272155 AACAGTAAGCTCTTTTGAGCTGATATATGGTAAGCTCAAACGAGCT
1 AACAGTAAGCTCATATGAGCTGA-A-ATGGTAAGCTCCAATGAGCT
69272201 GTGGTGAGTC
Statistics
Matches: 78, Mismatches: 8, Indels: 9
0.82 0.08 0.09
Matches are distributed among these distances:
44 35 0.45
45 4 0.05
47 20 0.26
48 1 0.01
49 18 0.23
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (45 bp):
AACAGTAAGCTCATATGAGCTGAAATGGTAAGCTCCAATGAGCTA
Found at i:69274242 original size:17 final size:17
Alignment explanation
Indices: 69274173--69274243 Score: 54
Period size: 19 Copynumber: 3.9 Consensus size: 17
69274163 TAATAGATTT
*
69274173 AAAATATAATATATAATA
1 AAAATATAAAATAT-ATA
*
69274191 ATAAAAATAAAATATTTATA
1 A-AAATATAAAATA--TATA
* *
69274211 AGAATA-ATAATTATATA
1 AAAATATA-AAATATATA
69274228 AAAATATAAAATATAT
1 AAAATATAAAATATAT
69274244 TGGTTTAGAA
Statistics
Matches: 41, Mismatches: 7, Indels: 11
0.69 0.12 0.19
Matches are distributed among these distances:
17 16 0.39
18 3 0.07
19 17 0.41
20 4 0.10
21 1 0.02
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (17 bp):
AAAATATAAAATATATA
Found at i:69274577 original size:13 final size:12
Alignment explanation
Indices: 69274540--69274608 Score: 54
Period size: 11 Copynumber: 5.8 Consensus size: 12
69274530 AAATGTCATA
69274540 ATAATATAAAAT
1 ATAATATAAAAT
* *
69274552 A-ATTATAATAT
1 ATAATATAAAAT
69274563 ATAATATGAAAAT
1 ATAATAT-AAAAT
*
69274576 ATATATGTAAAA-
1 ATA-ATATAAAAT
* *
69274588 ATAATACATAAT
1 ATAATATAAAAT
69274600 AT-ATATAAA
1 ATAATATAAA
69274609 TAATCAATAA
Statistics
Matches: 43, Mismatches: 10, Indels: 9
0.69 0.16 0.15
Matches are distributed among these distances:
11 19 0.44
12 10 0.23
13 11 0.26
14 3 0.07
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (12 bp):
ATAATATAAAAT
Found at i:69274610 original size:17 final size:17
Alignment explanation
Indices: 69274583--69274628 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
69274573 AATATATATG
*
69274583 TAAAAATAATACAT-AA
1 TAAATATAATACATCAA
*
69274599 TATATATAAATA-ATCAA
1 TAAATAT-AATACATCAA
69274616 TAAATATAATACA
1 TAAATATAATACA
69274629 AGTAAAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
16 11 0.46
17 13 0.54
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAATATAATACATCAA
Found at i:69274610 original size:58 final size:60
Alignment explanation
Indices: 69274495--69274626 Score: 150
Period size: 58 Copynumber: 2.2 Consensus size: 60
69274485 TTTTAATGAT
* *
69274495 AATAATATATAGATAAAAAATATATAATGGTATAAAAATGTCATAATAATATAAAATAAT-
1 AATAATATATA-ATAAAAAATATATAATGGTAAAAAAATGACATAATAATATAAAATAATC
* *
69274555 TATAATATATAATATGAAAATATAT-AT-GTAAAAATAAT-ACATAAT-ATATATAAATAATC
1 AATAATATATAATA-AAAAATATATAATGGTAAAAA-AATGACATAATAATATA-AAATAATC
69274614 AATAA-ATATAATA
1 AATAATATATAATA
69274627 CAAGTAAAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
57 5 0.08
58 27 0.43
59 12 0.19
60 19 0.30
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (60 bp):
AATAATATATAATAAAAAATATATAATGGTAAAAAAATGACATAATAATATAAAATAATC
Found at i:69274737 original size:15 final size:15
Alignment explanation
Indices: 69274638--69274743 Score: 67
Period size: 14 Copynumber: 7.0 Consensus size: 15
69274628 AAGTAAAAAT
*
69274638 ATAACAATAATATATAA
1 ATAA-AATAATGTAT-A
*
69274655 ATAATAATAATGTAAA
1 ATAA-AATAATGTATA
* * *
69274671 ATAATAATAATTTGTG
1 ATAA-AATAATGTATA
*
69274687 A-AAAATAATATATA
1 ATAAAATAATGTATA
69274701 AT-AAATAATG-ATA
1 ATAAAATAATGTATA
* *
69274714 ATATGAATAGTGTATA
1 ATA-AAATAATGTATA
69274730 ATAAAATAAT-TATA
1 ATAAAATAATGTATA
69274744 TAATATATAA
Statistics
Matches: 70, Mismatches: 15, Indels: 11
0.73 0.16 0.11
Matches are distributed among these distances:
13 5 0.07
14 20 0.29
15 13 0.19
16 20 0.29
17 12 0.17
ACGTcount: A:0.58, C:0.01, G:0.07, T:0.34
Consensus pattern (15 bp):
ATAAAATAATGTATA
Found at i:69276084 original size:4 final size:4
Alignment explanation
Indices: 69276075--69276112 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
69276065 GACTGTTAAA
*
69276075 TATT TATT TATT TATT TATT TATT T-TT TGTTT TATT TA
1 TATT TATT TATT TATT TATT TATT TATT T-ATT TATT TA
69276113 AGCACGGTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
3 3 0.10
4 25 0.81
5 3 0.10
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:69276756 original size:205 final size:206
Alignment explanation
Indices: 69276315--69276868 Score: 846
Period size: 205 Copynumber: 2.7 Consensus size: 206
69276305 AAATCTGCTT
* * * **
69276315 CTTCGATTTGTTCTCTAACAATACAGAGACGCCAAATCATCTTAGATTTGCTTCATCATATGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTAATCATAAACAC
* * *
69276380 GTGAAAGCCAAATCAGTTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
** * * *
69276445 GGATCTTGCTTCAGTGAAATTATCTGAAGGTGAGATCTGTTATGTATCTACTCCCCGTTAAAGTG
131 GGATCTTGCTTCAGTGAAAACATCTGAAGGTGAGATCTGCTATGTATCTACTACCCGTCAAAGTG
69276510 GAGATGCCAGA
196 GAGATGCCAGA
*
69276521 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTATATTTGCTTAATCATAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTAATCATAAACAC
* * *
69276586 GTGAAAGCCAAATCAGCTATGTCTTTGATTCGCTCCTTGTAGGCACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
* * *
69276651 GGAT-ATGCTTCAGT-ATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTACCCGTCGAAGT
131 GGATCTTGCTTCAGTGA-AAACATCTGAAGGTGAGATCTGCTATGTATCTACTACCCGTCAAAGT
69276714 GGAGATGCCAGA
195 GGAGATGCCAGA
*
69276726 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTACTTCAA-CATAAACA
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTT-AATCATAAACA
* *
69276790 CGTGAAAGCCAAATCAGCTATGTC-TTCAGTTTGTTCCTTGTAAGCACAAGGATGCCAAACCATC
65 CGTGAAAGCCAAATCAGCTATGTCTTTGA-TTTGTTCCTTGTAAGCACAAGGATGCCAAATCATC
69276854 TTGGATCTTGCTTCA
129 TTGGATCTTGCTTCA
69276869 ACCAGATCTG
Statistics
Matches: 316, Mismatches: 28, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
204 4 0.01
205 181 0.57
206 131 0.41
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTAATCATAAACAC
GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
GGATCTTGCTTCAGTGAAAACATCTGAAGGTGAGATCTGCTATGTATCTACTACCCGTCAAAGTG
GAGATGCCAGA
Found at i:69289120 original size:20 final size:18
Alignment explanation
Indices: 69289075--69289139 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 18
69289065 ATAATAATAT
69289075 ATAA-ATAAAAAATATATA
1 ATAATATAAAAAAT-TATA
**
69289093 ATGTTATAAAAAATGTCATA
1 ATAATATAAAAAAT-T-ATA
69289113 ATAATATAAAATAATTATA
1 ATAATATAAAA-AATTATA
69289132 AT-ATATAA
1 ATAATATAA
69289140 TATGAAAATA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
18 8 0.21
19 15 0.38
20 13 0.33
21 3 0.08
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.34
Consensus pattern (18 bp):
ATAATATAAAAAATTATA
Found at i:69289138 original size:61 final size:60
Alignment explanation
Indices: 69289068--69289187 Score: 149
Period size: 61 Copynumber: 2.0 Consensus size: 60
69289058 TTTAATGATA
*
69289068 ATAATATATAA-ATAAAAAATATATAATGTTATAAAA-AATGTCATAATA-ATATA-AAATAATT
1 ATAATATATAATAT-AAAAATATAT-ATG-TA-AAAATAAT-ACATAATATATATATAAATAATT
*
69289129 ATAATATATAATATGAAAATATATATGTAAAAATAATACATAATATATATATAAATAAT
1 ATAATATATAATATAAAAATATATATGTAAAAATAATACATAATATATATATAAATAAT
69289188 CAATAAATAT
Statistics
Matches: 53, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
58 11 0.21
59 10 0.19
60 10 0.19
61 20 0.38
62 2 0.04
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (60 bp):
ATAATATATAATATAAAAATATATATGTAAAAATAATACATAATATATATATAAATAATT
Found at i:69289150 original size:13 final size:12
Alignment explanation
Indices: 69289113--69289183 Score: 56
Period size: 13 Copynumber: 5.8 Consensus size: 12
69289103 AAATGTCATA
69289113 ATAATATAAAAT
1 ATAATATAAAAT
* *
69289125 A-ATTATAATAT
1 ATAATATAAAAT
69289136 ATAATATGAAAAT
1 ATAATAT-AAAAT
*
69289149 ATATATGTAAAA-
1 ATA-ATATAAAAT
* *
69289161 ATAATACATAAT
1 ATAATATAAAAT
69289173 ATATATATAAA
1 ATA-ATATAAA
69289184 TAATCAATAA
Statistics
Matches: 44, Mismatches: 10, Indels: 9
0.70 0.16 0.14
Matches are distributed among these distances:
11 14 0.32
12 11 0.25
13 16 0.36
14 3 0.07
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (12 bp):
ATAATATAAAAT
Found at i:69289192 original size:26 final size:24
Alignment explanation
Indices: 69289146--69289334 Score: 81
Period size: 23 Copynumber: 7.8 Consensus size: 24
69289136 ATAATATGAA
* *
69289146 AATATATATGTAAAAATAATACAT
1 AATATATATATAAAAATAATAAAT
69289170 AATATATATATAAATAATCAATAAAT
1 AATATATATATAAA-AAT-AATAAAT
* *
69289196 ATTATACA-AGTAAAAAT-ATAACAAT
1 AATATATATA-TAAAAATAAT-A-AAT
* *
69289221 AATATA-A-ATAATAAT-GTAAAAT
1 AATATATATATAAAAATAAT-AAAT
* * *
69289243 AATAATAATTTGTGAAAAATAATATAT
1 AAT-AT-ATATAT-AAAAATAATAAAT
* * * *
69289270 AATAAATA-ATGATAAT-ATGAAT
1 AATATATATATAAAAATAATAAAT
* *
69289292 AGTATATA-AT-AAAATAATTATAT
1 AATATATATATAAAAATAA-TAAAT
69289315 AATATATAATATAAAAATAA
1 AATATAT-ATATAAAAATAA
69289335 GGTTAAAAAT
Statistics
Matches: 124, Mismatches: 25, Indels: 30
0.69 0.14 0.17
Matches are distributed among these distances:
21 4 0.03
22 19 0.15
23 26 0.21
24 19 0.15
25 19 0.15
26 25 0.20
27 11 0.09
28 1 0.01
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.33
Consensus pattern (24 bp):
AATATATATATAAAAATAATAAAT
Found at i:69289193 original size:22 final size:21
Alignment explanation
Indices: 69289149--69289201 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
69289139 ATATGAAAAT
*
69289149 ATATATGTAAAAATAATACATA
1 ATATAT-TATAAATAATACATA
69289171 ATATATATATAAATAAT-CAATA
1 ATATAT-TATAAATAATAC-ATA
69289193 A-ATATTATA
1 ATATATTATA
69289202 CAAGTAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 4 0.14
21 5 0.18
22 19 0.68
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (21 bp):
ATATATTATAAATAATACATA
Found at i:69289246 original size:22 final size:22
Alignment explanation
Indices: 69289110--69289330 Score: 95
Period size: 25 Copynumber: 9.6 Consensus size: 22
69289100 AAAAAATGTC
69289110 ATAATAATATAAAATAAT-TATA
1 ATAATAATATAAAATAATATA-A
69289132 ATATATAATATGAAAATATATATGTAA
1 ATA-ATAATAT-AAAATA-ATA--TAA
*
69289159 A-AATAATACATAATATATATATAA
1 ATAATAAT--ATAAAATA-ATATAA
* *
69289183 ATAATCA-AT-AAATATTATACA
1 ATAATAATATAAAATAATATA-A
*
69289204 AGTAAAAATATAACAATAATATAA
1 A-TAATAATATAA-AATAATATAA
*
69289228 ATAATAATGTAAAAT-A-AT-A
1 ATAATAATATAAAATAATATAA
* *
69289247 ATAAT-TTGTGAAAAATAATAT--
1 ATAATAATAT--AAAATAATATAA
* *
69289268 ATAATAA-ATAATGATAATATGA
1 ATAATAATATAA-AATAATATAA
*
69289290 ATAGTATATAATAAAATAATTATATA
1 ATAATA-AT-ATAAAATAA-TATA-A
69289316 ATATATAATATAAAA
1 ATA-ATAATATAAAA
69289331 ATAAGGTTAA
Statistics
Matches: 154, Mismatches: 17, Indels: 53
0.69 0.08 0.24
Matches are distributed among these distances:
18 3 0.02
19 8 0.05
20 18 0.12
21 14 0.09
22 19 0.12
23 19 0.12
24 17 0.11
25 32 0.21
26 16 0.10
27 6 0.04
28 2 0.01
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (22 bp):
ATAATAATATAAAATAATATAA
Found at i:69289247 original size:20 final size:21
Alignment explanation
Indices: 69289224--69289274 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
69289214 TAACAATAAT
69289224 ATAAATAATAATGT-AAAATA
1 ATAAATAATAATGTAAAAATA
*
69289244 AT-AATAAT-TTGTGAAAAATA
1 ATAAATAATAATGT-AAAAATA
*
69289264 ATATATAATAA
1 ATAAATAATAA
69289275 ATAATGATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 6
0.73 0.09 0.18
Matches are distributed among these distances:
18 3 0.12
19 6 0.25
20 10 0.42
21 5 0.21
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (21 bp):
ATAAATAATAATGTAAAAATA
Found at i:69289313 original size:16 final size:15
Alignment explanation
Indices: 69289112--69289327 Score: 73
Period size: 16 Copynumber: 14.6 Consensus size: 15
69289102 AAAATGTCAT
*
69289112 AATAATATAAAATAA
1 AATAATATATAATAA
* *
69289127 TTATAATATATAATATG
1 -AATAATATATAATA-A
*
69289144 AA-AATATATATGTAAA
1 AATAATATATA-AT-AA
*
69289160 AATAATACATAAT-A
1 AATAATATATAATAA
*
69289174 TAT-ATATA-AATAA
1 AATAATATATAATAA
*
69289187 TCAATAA-ATATTATACA
1 --AATAATATATAATA-A
* *
69289204 AGTAA-AAAT-ATAA
1 AATAATATATAATAA
69289217 CAATAATATA-AAT--
1 -AATAATATATAATAA
* *
69289230 AATAATGTAAAATAA
1 AATAATATATAATAA
* * *
69289245 TAATAATTTGTGA-AA
1 -AATAATATATAATAA
69289260 AATAATATATAAT-A
1 AATAATATATAATAA
* *
69289274 AATAAT-GATAATATG
1 AATAATATATAATA-A
*
69289289 AATAGTATATAATAA
1 AATAATATATAATAA
69289304 AATAATTATATAAT-A
1 AATAA-TATATAATAA
*
69289319 TATAATATA
1 AATAATATA
69289328 AAAATAAGGT
Statistics
Matches: 147, Mismatches: 31, Indels: 46
0.66 0.14 0.21
Matches are distributed among these distances:
12 11 0.07
13 14 0.10
14 30 0.20
15 40 0.27
16 43 0.29
17 9 0.06
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (15 bp):
AATAATATATAATAA
Found at i:69292571 original size:47 final size:47
Alignment explanation
Indices: 69292478--69292611 Score: 147
Period size: 47 Copynumber: 3.0 Consensus size: 47
69292468 CGATATCTAG
* * *
69292478 CACACTAAGTACAGTATATAGCCGAAGCTATCTCAAATTGTACACTA
1 CACACTAAGTACAGTATATAGCCAAAGCTATCTCAAATCGCACACTA
* * *
69292525 CACACTAAGTGCAGTATATAGCCAAAGCTATCTTAAATCGCGCACT-
1 CACACTAAGTACAGTATATAGCCAAAGCTATCTCAAATCGCACACTA
* *
69292571 -A-AGT--GT-C-GTACATAGCCAAAGCTATCTCAAATCGCACACTA
1 CACACTAAGTACAGTATATAGCCAAAGCTATCTCAAATCGCACACTA
69292612 AGTGCCATAT
Statistics
Matches: 76, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
40 30 0.39
41 1 0.01
42 2 0.03
44 2 0.03
45 1 0.01
47 40 0.53
ACGTcount: A:0.37, C:0.25, G:0.14, T:0.24
Consensus pattern (47 bp):
CACACTAAGTACAGTATATAGCCAAAGCTATCTCAAATCGCACACTA
Found at i:69292626 original size:40 final size:39
Alignment explanation
Indices: 69292525--69292627 Score: 143
Period size: 40 Copynumber: 2.6 Consensus size: 39
69292515 TTGTACACTA
*
69292525 CACACTAAGTGCAGTATATAGCCAAAGCTATCTTAAATCG
1 CACACTAAGTGCA-TATATAGCCAAAGCTATCTCAAATCG
* * *
69292565 CGCACTAAGTGTCGTACATAGCCAAAGCTATCTCAAATCG
1 CACACTAAGTG-CATATATAGCCAAAGCTATCTCAAATCG
69292605 CACACTAAGTGCCATATATAGCC
1 CACACTAAGTG-CATATATAGCC
69292628 GATTTGTCAT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
40 53 0.98
41 1 0.02
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (39 bp):
CACACTAAGTGCATATATAGCCAAAGCTATCTCAAATCG
Found at i:69292888 original size:16 final size:17
Alignment explanation
Indices: 69292867--69292898 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
69292857 AATTTAGCCT
69292867 AAAATTTACA-ATTTGG
1 AAAATTTACACATTTGG
69292883 AAAATTTACACATTTG
1 AAAATTTACACATTTG
69292899 CCCTTAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (17 bp):
AAAATTTACACATTTGG
Found at i:69294579 original size:26 final size:26
Alignment explanation
Indices: 69294549--69294618 Score: 104
Period size: 26 Copynumber: 2.7 Consensus size: 26
69294539 TTTTAATAAT
* *
69294549 TGGGGCAAAAGCCCTTTTCCGTCAGC
1 TGGGGCATAAGCCCTTTTCCGTCAAC
* *
69294575 TGGGGCATAAGCCCTTTTCGGTGAAC
1 TGGGGCATAAGCCCTTTTCCGTCAAC
69294601 TGGGGCATAAGCCCTTTT
1 TGGGGCATAAGCCCTTTT
69294619 GCACTTCCTC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.27
Consensus pattern (26 bp):
TGGGGCATAAGCCCTTTTCCGTCAAC
Found at i:69294693 original size:20 final size:20
Alignment explanation
Indices: 69294668--69294734 Score: 118
Period size: 20 Copynumber: 3.4 Consensus size: 20
69294658 TTATGAATAC
69294668 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
69294688 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
69294708 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
69294728 ATCATGT
1 ATCATGT
69294735 ATATCAAAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
20 44 0.96
21 2 0.04
ACGTcount: A:0.34, C:0.19, G:0.10, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:69294699 original size:11 final size:11
Alignment explanation
Indices: 69294668--69294723 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
69294658 TTATGAATAC
69294668 ATCATGTGCAT
1 ATCATGTGCAT
*
69294679 ATCA--TACAT
1 ATCATGTGCAT
69294688 ATCATGTGCAT
1 ATCATGTGCAT
*
69294699 ATCA--TACAT
1 ATCATGTGCAT
69294708 ATCATGTGCAT
1 ATCATGTGCAT
69294719 ATCAT
1 ATCAT
69294724 ATCAATCATG
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:69294740 original size:9 final size:10
Alignment explanation
Indices: 69294668--69294740 Score: 64
Period size: 9 Copynumber: 7.4 Consensus size: 10
69294658 TTATGAATAC
69294668 ATCATGTGCAT
1 ATCATGT-CAT
*
69294679 ATCAT-ACAT
1 ATCATGTCAT
69294688 ATCATGTGCAT
1 ATCATGT-CAT
*
69294699 ATCAT-ACAT
1 ATCATGTCAT
69294708 ATCATGTGCAT
1 ATCATGT-CAT
*
69294719 ATCATATCA-
1 ATCATGTCAT
69294728 ATCATGT-AT
1 ATCATGTCAT
69294737 ATCA
1 ATCA
69294741 AAATCCCATG
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
8 1 0.02
9 26 0.51
10 2 0.04
11 22 0.43
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.36
Consensus pattern (10 bp):
ATCATGTCAT
Found at i:69295242 original size:8 final size:8
Alignment explanation
Indices: 69295229--69295256 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
69295219 AAATGCCAGA
69295229 ATTTCGGC
1 ATTTCGGC
69295237 ATTTCGGC
1 ATTTCGGC
69295245 ATTTCGGC
1 ATTTCGGC
69295253 ATTT
1 ATTT
69295257 ATCAATTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.43
Consensus pattern (8 bp):
ATTTCGGC
Found at i:69302679 original size:26 final size:26
Alignment explanation
Indices: 69302645--69302711 Score: 116
Period size: 26 Copynumber: 2.6 Consensus size: 26
69302635 TAATAAATGG
*
69302645 GGCAAAAGCCCTTTTCGGTAAACTGA
1 GGCATAAGCCCTTTTCGGTAAACTGA
*
69302671 GGCATAAGCCCTTTTCGGTAAACTGG
1 GGCATAAGCCCTTTTCGGTAAACTGA
69302697 GGCATAAGCCCTTTT
1 GGCATAAGCCCTTTT
69302712 GCACTTCCTC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (26 bp):
GGCATAAGCCCTTTTCGGTAAACTGA
Found at i:69302786 original size:20 final size:20
Alignment explanation
Indices: 69302761--69302807 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
69302751 TTATGAATAC
69302761 ATCATGTGCATATCATA-CA
1 ATCATGTGCATATCATATCA
69302780 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
69302801 ATCATGT
1 ATCATGT
69302808 ATATCAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:69311575 original size:27 final size:27
Alignment explanation
Indices: 69311537--69312085 Score: 539
Period size: 27 Copynumber: 20.6 Consensus size: 27
69311527 TACACTACAA
69311537 GGTATTTCGATAATTTTACAAATC-AG
1 GGTATTTCGATAATTTTACAAATCGAG
* * *
69311563 TGGTGTTTCGATAATTTTAAAAATCGAA
1 -GGTATTTCGATAATTTTACAAATCGAG
*
69311591 GGTATTTCGGTAATTTTACAAATCGAG
1 GGTATTTCGATAATTTTACAAATCGAG
* *
69311618 GGTATTT-TAGTAATTTCAC-AATCGAG
1 GGTATTTCGA-TAATTTTACAAATCGAG
* * * *
69311644 GGTATTTTGGTAATTTTACAAATTGGG
1 GGTATTTCGATAATTTTACAAATCGAG
69311671 GGTATTTCGATAATTTTACAAA-CTGAG
1 GGTATTTCGATAATTTTACAAATC-GAG
* *
69311698 GGTGTTTCGGTAATTTT-CAAATCGAG
1 GGTATTTCGATAATTTTACAAATCGAG
* * *
69311724 GGTGTTTTGGTAATTTTACAAATCGAG
1 GGTATTTCGATAATTTTACAAATCGAG
* * * *
69311751 GGTGTTGCGGTAATTTCACAAATC-A-
1 GGTATTTCGATAATTTTACAAATCGAG
* * *
69311776 GGTATTTCGGTAATTTTACAAATCAAA
1 GGTATTTCGATAATTTTACAAATCGAG
* *
69311803 GGTATTTCAATAATTTCA-AAATCGAG
1 GGTATTTCGATAATTTTACAAATCGAG
* *
69311829 GGTATTTCAATAATTTTACAAATCAAG
1 GGTATTTCGATAATTTTACAAATCGAG
* * * *
69311856 GGTGTTTCGTTAATTTCACAAATTGAG
1 GGTATTTCGATAATTTTACAAATCGAG
* * * *
69311883 GGTGTTTCGGTAATTTTACAAATTGAA
1 GGTATTTCGATAATTTTACAAATCGAG
* * *
69311910 GGTGTTTCAATAATTTCACAAATCGAG
1 GGTATTTCGATAATTTTACAAATCGAG
*
69311937 GGTATTTC-AGTAATTTTACAAATTGAG
1 GGTATTTCGA-TAATTTTACAAATCGAG
* *
69311964 GGTATTTC-AGTAATTTCA-AAACCGAG
1 GGTATTTCGA-TAATTTTACAAATCGAG
*
69311990 GGTATTTCGGTAATTTTACAAATCGAG
1 GGTATTTCGATAATTTTACAAATCGAG
* * *
69312017 GGTATTT-TAGTAATTTCAC-AATTGAG
1 GGTATTTCGA-TAATTTTACAAATCGAG
*
69312043 GGTATTTCAATAATTTTACAAATCGAG
1 GGTATTTCGATAATTTTACAAATCGAG
*
69312070 GGTGTTTCGATAATTT
1 GGTATTTCGATAATTT
69312086 CTCTTTATTA
Statistics
Matches: 439, Mismatches: 67, Indels: 32
0.82 0.12 0.06
Matches are distributed among these distances:
25 21 0.05
26 113 0.26
27 304 0.69
28 1 0.00
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (27 bp):
GGTATTTCGATAATTTTACAAATCGAG
Found at i:69311658 original size:53 final size:54
Alignment explanation
Indices: 69311537--69312086 Score: 573
Period size: 53 Copynumber: 10.3 Consensus size: 54
69311527 TACACTACAA
* * * * *
69311537 GGTATTTCGATAATTTTACAAATC-AGTGGTGTTTC-GATAATTTTAAAAATCGAA
1 GGTATTTCGGTAATTTCACAAATCGAG-GGTATTTCAG-TAATTTTACAAATCGAG
* * *
69311591 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTCAC-AATCGAG
1 GGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAG
* * * *
69311644 GGTATTTTGGTAATTTTACAAATTGGGGGTATTTC-GATAATTTTACAAA-CTGAG
1 GGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAG-TAATTTTACAAATC-GAG
* * * **
69311698 GGTGTTTCGGTAATTT-TCAAATCGAGGGTGTTTTGGTAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAG
* * * * *
69311751 GGTGTTGCGGTAATTTCACAAATC-A-GGTATTTCGGTAATTTTACAAATCAAA
1 GGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAG
** * *
69311803 GGTATTTCAATAATTTCA-AAATCGAGGGTATTTCAATAATTTTACAAATCAAG
1 GGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAG
* * * * * * *
69311856 GGTGTTTCGTTAATTTCACAAATTGAGGGTGTTTCGGTAATTTTACAAATTGAA
1 GGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAG
* ** *
69311910 GGTGTTTCAATAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATTGAG
1 GGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAG
* * *
69311964 GGTATTTCAGTAATTTCA-AAACCGAGGGTATTTCGGTAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAG
** * *
69312017 GGTATTTTAGTAATTTCAC-AATTGAGGGTATTTCAATAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAG
* *
69312070 GGTGTTTCGATAATTTC
1 GGTATTTCGGTAATTTC
69312087 TCTTTATTAT
Statistics
Matches: 423, Mismatches: 61, Indels: 25
0.83 0.12 0.05
Matches are distributed among these distances:
51 5 0.01
52 39 0.09
53 221 0.52
54 155 0.37
55 3 0.01
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (54 bp):
GGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAG
Found at i:69311658 original size:80 final size:81
Alignment explanation
Indices: 69311537--69312085 Score: 555
Period size: 80 Copynumber: 6.9 Consensus size: 81
69311527 TACACTACAA
* * * *
69311537 GGTATTTC-GATAATTTTACAAATC-AGTGGTGTTTC-GATAATTTTAAAAATCGAAGGTATTTC
1 GGTATTTCAG-TAATTTCACAAATCGAG-GGTATTTCAG-TAATTTTACAAATCGAGGGTATTTC
*
69311599 GGTAATTTTACAAATCGAG
63 GATAATTTTACAAATCGAG
* ** * *
69311618 GGTATTTTAGTAATTTCAC-AATCGAGGGTATTTTGGTAATTTTACAAATTGGGGGTATTTCGAT
1 GGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGAT
69311682 AATTTTACAAA-CTGAG
66 AATTTTACAAATC-GAG
* * * * ** * * *
69311698 GGTGTTTCGGTAATTT-TCAAATCGAGGGTGTTTTGGTAATTTTACAAATCGAGGGTGTTGCGGT
1 GGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGAT
*
69311762 AATTTCACAAATC-A-
66 AATTTTACAAATCGAG
* * * * * * *
69311776 GGTATTTCGGTAATTTTACAAATCAAAGGTATTTCAATAATTTCA-AAATCGAGGGTATTTCAAT
1 GGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGAT
*
69311840 AATTTTACAAATCAAG
66 AATTTTACAAATCGAG
* * * * * * * *
69311856 GGTGTTTC-GTTAATTTCACAAATTGAGGGTGTTTCGGTAATTTTACAAATTGAAGGTGTTTCAA
1 GGTATTTCAG-TAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGA
*
69311920 TAATTTCACAAATCGAG
65 TAATTTTACAAATCGAG
* * * * *
69311937 GGTATTTCAGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCA-AAACCGAGGGTATTTCGGT
1 GGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGAT
69312001 AATTTTACAAATCGAG
66 AATTTTACAAATCGAG
* * * *
69312017 GGTATTTTAGTAATTTCAC-AATTGAGGGTATTTCAATAATTTTACAAATCGAGGGTGTTTCGAT
1 GGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGAT
69312081 AATTT
66 AATTT
69312086 CTCTTTATTA
Statistics
Matches: 388, Mismatches: 67, Indels: 27
0.80 0.14 0.06
Matches are distributed among these distances:
78 42 0.11
79 48 0.12
80 209 0.54
81 87 0.22
82 2 0.01
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (81 bp):
GGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGAT
AATTTTACAAATCGAG
Found at i:69315487 original size:56 final size:55
Alignment explanation
Indices: 69315377--69315504 Score: 211
Period size: 56 Copynumber: 2.3 Consensus size: 55
69315367 ACATTTTGGA
*
69315377 GTTGGCATCGATATGTGATTCCGATATGGTGTGCGAGCAAGACCACGTTTAATAC
1 GTTGGCATCAATATGTGATTCCGATATGGTGTGCGAGCAAGACCACGTTTAATAC
* *
69315432 GTTGGCATCAATATGTGATTCTGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
1 GTTGGCATCAATATGTGATTCCGATATG-GTGTGCGAGCAAGACCACGTTTAATAC
*
69315488 ATTGGCATCAATATGTG
1 GTTGGCATCAATATGTG
69315505 TTTACGAGTA
Statistics
Matches: 68, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
55 26 0.38
56 42 0.62
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (55 bp):
GTTGGCATCAATATGTGATTCCGATATGGTGTGCGAGCAAGACCACGTTTAATAC
Found at i:69316440 original size:49 final size:49
Alignment explanation
Indices: 69316328--69316829 Score: 902
Period size: 49 Copynumber: 10.3 Consensus size: 49
69316318 CATCAAGGTT
* * * * * *
69316328 TACACTTTCACATCCATCACGTTGGCCACTCGG-CTCTGTCAC--ATATA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCT-TATCACATATATA
69316375 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
69316424 TACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
69316473 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
69316522 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
69316571 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
69316620 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
69316669 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
69316718 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
69316767 TACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
69316816 TACACTTTCACATT
1 TACACTTTCACATT
69316830 TATTCAAATA
Statistics
Matches: 443, Mismatches: 9, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
47 33 0.07
48 2 0.00
49 408 0.92
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:69328171 original size:27 final size:27
Alignment explanation
Indices: 69328141--69328318 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
69328131 ATATTGAGTC
* * * *
69328141 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
69328168 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69328195 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
69328223 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
69328250 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
69328277 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69328304 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69328319 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:69328280 original size:82 final size:81
Alignment explanation
Indices: 69328162--69328317 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
69328152 TGCTATATAA
* *
69328162 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
69328227 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
69328244 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
69328308 CACTTAGTGC
65 CACTTAGTGC
69328318 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:69336904 original size:27 final size:27
Alignment explanation
Indices: 69336874--69336936 Score: 92
Period size: 27 Copynumber: 2.3 Consensus size: 27
69336864 GTGAAAAAGT
69336874 CACCAGATACAGATA-TTGTAGCAGAGC
1 CACCAGA-ACAGATATTTGTAGCAGAGC
* *
69336901 CACCAGAACAGATATTTGTGGCATAGC
1 CACCAGAACAGATATTTGTAGCAGAGC
69336928 CACCAGAAC
1 CACCAGAAC
69336937 GCTTCCTCCA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
26 7 0.21
27 26 0.79
ACGTcount: A:0.37, C:0.25, G:0.21, T:0.17
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTAGCAGAGC
Found at i:69337344 original size:108 final size:108
Alignment explanation
Indices: 69337161--69337537 Score: 562
Period size: 108 Copynumber: 3.5 Consensus size: 108
69337151 GGGTAAAATG
* * * * *
69337161 GTAATTTTACCCCACAAG-GGTATCTCGGTAATTCTACCCTACAGGGGTATTTC-AGTAATTCTA
1 GTAATTTTACCCTAC-AGTGGTATTTCAGTAATTCTACTCTACAGGGGTATTTCGA-TATTTCTA
* *
69337224 CCCTATAGGGGTATTTCGATAATTCTACCTTACAGGGGTATTTTA
64 CCCTACAAGGGTATTTCGATAATTCTACCTTACAGGGGTATTTTA
69337269 GTAATTTTACCCTACAGTGGTATTTCAGTAATTCTACTCTACAGGGGTATTTCGATATTTCTACC
1 GTAATTTTACCCTACAGTGGTATTTCAGTAATTCTACTCTACAGGGGTATTTCGATATTTCTACC
69337334 CTACAAGGGTATTTCGATAATTCTACCTTACAGGGGTATTTTA
66 CTACAAGGGTATTTCGATAATTCTACCTTACAGGGGTATTTTA
69337377 GTAATTTTACCCTACAGTGGTATTTCAGTAATTCTACTCTACAGGGGTATTTCGATATTTCTACC
1 GTAATTTTACCCTACAGTGGTATTTCAGTAATTCTACTCTACAGGGGTATTTCGATATTTCTACC
* ** **
69337442 CTACAAGGGTATTTCGATAATTCTACCCTACAAAGGTATTTCG
66 CTACAAGGGTATTTCGATAATTCTACCTTACAGGGGTATTTTA
* * * *
69337485 GTAATTCTACCCTATAGTGGTATTTTAGTAATTCTAC-CTTACAAGGGTATTTC
1 GTAATTTTACCCTACAGTGGTATTTCAGTAATTCTACTC-TACAGGGGTATTTC
69337538 AATAATTTTA
Statistics
Matches: 250, Mismatches: 16, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
107 3 0.01
108 246 0.98
109 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (108 bp):
GTAATTTTACCCTACAGTGGTATTTCAGTAATTCTACTCTACAGGGGTATTTCGATATTTCTACC
CTACAAGGGTATTTCGATAATTCTACCTTACAGGGGTATTTTA
Found at i:69337543 original size:27 final size:27
Alignment explanation
Indices: 69337161--69337571 Score: 399
Period size: 27 Copynumber: 15.2 Consensus size: 27
69337151 GGGTAAAATG
* * * *
69337161 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
69337188 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
69337215 GTAATTCTACCCTATAGGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
69337241 GATAATTCTACCTTACAGGGGTATTTTA
1 G-TAATTCTACCCTACAAGGGTATTTCA
*
69337269 GTAATTTTACCCTAC-AGTGGTATTTCA
1 GTAATTCTACCCTACAAG-GGTATTTCA
* *
69337296 GTAATTCTACTCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
*
69337322 GATATTTCTACCCTACAAGGGTATTTC-
1 G-TAATTCTACCCTACAAGGGTATTTCA
* * *
69337349 GATAATTCTACCTTACAGGGGTATTTTA
1 G-TAATTCTACCCTACAAGGGTATTTCA
*
69337377 GTAATTTTACCCTAC-AGTGGTATTTCA
1 GTAATTCTACCCTACAAG-GGTATTTCA
* *
69337404 GTAATTCTACTCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
*
69337430 GATATTTCTACCCTACAAGGGTATTTC-
1 G-TAATTCTACCCTACAAGGGTATTTCA
* *
69337457 GATAATTCTACCCTACAAAGGTATTTCG
1 G-TAATTCTACCCTACAAGGGTATTTCA
* *
69337485 GTAATTCTACCCTA-TAGTGGTATTTTA
1 GTAATTCTACCCTACAAG-GGTATTTCA
*
69337512 GTAATTCTACCTTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * ** *
69337539 ATAATTTTA-CAAATCGAGGGTATTTCA
1 GTAATTCTACCCTA-CAAGGGTATTTCA
69337566 GTAATT
1 GTAATT
69337572 TTGCAAACTG
Statistics
Matches: 323, Mismatches: 48, Indels: 26
0.81 0.12 0.07
Matches are distributed among these distances:
26 8 0.02
27 308 0.95
28 7 0.02
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:69337561 original size:54 final size:54
Alignment explanation
Indices: 69337188--69338421 Score: 424
Period size: 54 Copynumber: 23.0 Consensus size: 54
69337178 GGGTATCTCG
* * * ** * *
69337188 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAG-GGGTA-TTTC
1 GTAATTCTACCATACAAGGGTATTTCAGTAATTTTA-CAAATCGAGGGTATTTTA
* * * ** *
69337241 GATAATTCTACCTTACAGGGGTATTTTAGTAATTTTAC-CCTAC-AGTGGTATTTCA
1 G-TAATTCTACCATACAAGGGTATTTCAGTAATTTTACAAAT-CGAG-GGTATTTTA
* ** * *
69337296 GTAATTCTACTC-TACAGGGGTATTTC-G-ATATTTCTAC-CCTACAAGGGTA-TTTC
1 GTAATTCTAC-CATACAAGGGTATTTCAGTA-ATTT-TACAAAT-CGAGGGTATTTTA
* * * ** *
69337349 GATAATTCTACCTTACAGGGGTATTTTAGTAATTTTAC-CCTAC-AGTGGTATTTCA
1 G-TAATTCTACCATACAAGGGTATTTCAGTAATTTTACAAAT-CGAG-GGTATTTTA
* ** * *
69337404 GTAATTCTACTC-TACAGGGGTATTTC-G-ATATTTCTAC-CCTACAAGGGTA-TTTC
1 GTAATTCTAC-CATACAAGGGTATTTCAGTA-ATTT-TACAAAT-CGAGGGTATTTTA
* * * * **
69337457 GATAATTCTACCCTACAAAGGTATTTCGGTAATTCTACCCTAT--AGTGGTATTTTA
1 G-TAATTCTACCATACAAGGGTATTTCAGTAATTTTA-CAAATCGAG-GGTATTTTA
* * *
69337512 GTAATTCTACCTTACAAGGGTATTTCAATAATTTTACAAATCGAGGGTATTTCA
1 GTAATTCTACCATACAAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTA
** * * *
69337566 GTAATT-TTGCAAACTGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTA
1 GTAATTCTACCATAC-AAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTA
* * * ** * * * *
69337620 GTAATTTTACAAT-CGATAGTATTTCAGTAATTTTATAAATCGGGGGTACTTTG
1 GTAATTCTACCATACAAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTA
* * * * *
69337673 GTAATTTTACAAGT-CGAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTCTACCA-TACAAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTA
* ** * * *
69337727 ATAATT-TTGCAAACTAAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTCTACCATAC-AAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTA
* * * * ** *
69337781 GTAATTTTA-CAAATCGAGGGTATTTTAGTAATTTTAC-AATCGATAGTATTTCA
1 GTAATTCTACCATA-CAAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTA
* * * ** * *
69337834 GTAATTTTA-TAAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAGGGTATTTTA
1 GTAATTCTACCATA-CAAGGGTA-TTTCAGTAATTTTACAAATCGAGGGTATTTTA
* * * * * * **
69337888 GTAATTTTA-CAAATCGAGGGTATTTCAATAATTTTGCAAA-CTAAGGGTATTTCG
1 GTAATTCTACCATA-CAAGGGTATTTCAGTAATTTTACAAATC-GAGGGTATTTTA
* * * * *
69337942 GTAATTTTA-CAAATCGAGGGTATTTCAGTAATTTTAC-AATCGATGGTATTTTG
1 GTAATTCTACCATA-CAAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTA
* * * ** * * * *
69337995 GTAATTTTA-TAAACTGGGGGCACTTT-GGTAATTTTACAAGTCGAGGGTATTTCA
1 GTAATTCTACCATAC-AAGGGTA-TTTCAGTAATTTTACAAATCGAGGGTATTTTA
* * * * * * *
69338049 GTAATTTTA-CAAATCGAGGGTATTTCAGTAATTTTATAAA-CGACGATA-TTTC
1 GTAATTCTACCATA-CAAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTA
* * * ** * * *
69338101 GATAATTTTA-TAAACCGGGAGTACTTT-GGTAATTTTACAAGTCGAGGGTATTTCA
1 G-TAATTCTACCATACAAGG-GTA-TTTCAGTAATTTTACAAATCGAGGGTATTTTA
* * * * *
69338156 GTAATTTTA-CAAATCTAGGGTATTTCAGTAATTTTATAAA-CTGAGGGTA-TTTC
1 GTAATTCTACCATA-CAAGGGTATTTCAGTAATTTTACAAATC-GAGGGTATTTTA
* * * * **
69338209 GATAATTTTA-CAAATCGAGGGTATTTC-GATAATTTTGCAAA-CTGAGGGTATTTCG
1 G-TAATTCTACCATA-CAAGGGTATTTCAG-TAATTTTACAAATC-GAGGGTATTTTA
* * ** * ** **
69338264 GTAATTTTACAAATTGAA-GGTATTTTAGTAATTTTAC-AATCGACAGTATTTCG
1 GTAATTCTAC-CATACAAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTA
* * * * * *
69338317 GTAATTTTA-TAAACTAGGGGTACTTT-GGTAATTTTACAAGTCGAGGGTATTTTA
1 GTAATTCTACCATAC-AAGGGTA-TTTCAGTAATTTTACAAATCGAGGGTATTTTA
* * * * * *
69338371 GTAATTTTA-CAAATCGAGGGTATTTTAGTAATTTTA-TAATCGACGGTATTT
1 GTAATTCTACCATA-CAAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTT
69338422 CGGTAATTTT
Statistics
Matches: 952, Mismatches: 162, Indels: 134
0.76 0.13 0.11
Matches are distributed among these distances:
51 1 0.00
52 11 0.01
53 257 0.27
54 634 0.67
55 45 0.05
56 4 0.00
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (54 bp):
GTAATTCTACCATACAAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTA
Found at i:69337572 original size:27 final size:27
Alignment explanation
Indices: 69337528--69338484 Score: 983
Period size: 27 Copynumber: 35.7 Consensus size: 27
69337518 CTACCTTACA
*
69337528 AGGGTATTTCAATAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
69337555 AGGGTATTTCAGTAATTTTGCAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
*
69337582 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
69337609 AGGGTATTTTAGTAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
** *
69337635 ATAGTATTTCAGTAATTTTATAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
69337662 GGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCAGTAATTTTACAAATCG
*
69337689 AGGGTATTTTAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
69337716 AGGGTATTTCAATAATTTTGCAAA-CTA
1 AGGGTATTTCAGTAATTTTACAAATC-G
*
69337743 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
69337770 AGGGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
69337797 AGGGTATTTTAGTAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
** *
69337823 ATAGTATTTCAGTAATTTTATAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
69337850 GGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCAGTAATTTTACAAATCG
*
69337877 AGGGTATTTTAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
69337904 AGGGTATTTCAATAATTTTGCAAA-CTA
1 AGGGTATTTCAGTAATTTTACAAATC-G
*
69337931 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
69337958 AGGGTATTTCAGTAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* ** *
69337984 ATGGTATTTTGGTAATTTTATAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
* * * *
69338011 GGGGCACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCAGTAATTTTACAAATCG
69338038 AGGGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
69338065 AGGGTATTTCAGTAATTTTATAAA-CG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * * *
69338091 ACGATATTTC-GATAATTTTATAAACCG
1 AGGGTATTTCAG-TAATTTTACAAATCG
* *
69338118 -GGAGTACTTT-GGTAATTTTACAAGTCG
1 AGG-GTA-TTTCAGTAATTTTACAAATCG
*
69338145 AGGGTATTTCAGTAATTTTACAAATCT
1 AGGGTATTTCAGTAATTTTACAAATCG
*
69338172 AGGGTATTTCAGTAATTTTATAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
69338199 AGGGTATTTC-GATAATTTTACAAATCG
1 AGGGTATTTCAG-TAATTTTACAAATCG
*
69338226 AGGGTATTTC-GATAATTTTGCAAA-CTG
1 AGGGTATTTCAG-TAATTTTACAAATC-G
* *
69338253 AGGGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
69338280 AAGGTATTTTAGTAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
** * * *
69338306 ACAGTATTTCGGTAATTTTATAAA-CT
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
69338332 AGGGGTACTTT-GGTAATTTTACAAGTCG
1 A-GGGTA-TTTCAGTAATTTTACAAATCG
*
69338360 AGGGTATTTTAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
69338387 AGGGTATTTTAGTAATTTTA-TAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * * *
69338413 ACGGTATTTCGGTAATTTTATAAACCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
69338440 GGGGTACTTT-GGTAATTTTACAACT-G
1 AGGGTA-TTTCAGTAATTTTACAAATCG
*
69338466 -GGGTATTTCAATAATTTTA
1 AGGGTATTTCAGTAATTTTA
69338485 GTAAACTAAA
Statistics
Matches: 781, Mismatches: 111, Indels: 78
0.81 0.11 0.08
Matches are distributed among these distances:
24 3 0.00
25 14 0.02
26 156 0.20
27 579 0.74
28 29 0.04
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:69337679 original size:107 final size:107
Alignment explanation
Indices: 69337528--69338484 Score: 1000
Period size: 107 Copynumber: 8.9 Consensus size: 107
69337518 CTACCTTACA
* * * *
69337528 AGGGTATTTCAATAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTCG
1 AGGGTATTTCAGTAATTTTATAAATCGAGGGTATTTCGGTAATTTTACAAACTGAGGGTATTT-G
*
69337593 GTAATTTTACAAATCGAGGGTATTTTAGTAATTTTAC-AATCG
65 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCG
** * *
69337635 ATAGTATTTCAGTAATTTTATAAATCGGGGGTACTTT-GGTAATTTTAC-AAGTCGAGGGTATTT
1 AGGGTATTTCAGTAATTTTATAAATCGAGGGTA-TTTCGGTAATTTTACAAACT-GAGGGTA-TT
* * * *
69337698 TAGTAATTTTACAAATCGAGGGTATTTCAATAATTTTGCAAA-CTA
63 TGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATC-G
* * *
69337743 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAA-TCGAGGGTATTTT
1 AGGGTATTTCAGTAATTTTATAAATCGAGGGTATTTCGGTAATTTTACAAACT-GAGGGTA-TTT
* ** *
69337807 AGTAATTTTAC-AATCGATAGTATTTCAGTAATTTTATAAATCG
64 GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCG
* * * * **
69337850 GGGGTACTTT-GGTAATTTTACAAGTCGAGGGTATTTTAGTAATTTTACAAA-TCGAGGGTATTT
1 AGGGTA-TTTCAGTAATTTTATAAATCGAGGGTATTTCGGTAATTTTACAAACT-GAGGGTATTT
** * * *
69337913 CAATAATTTTGCAAA-CTAAGGGTATTTCGGTAATTTTACAAATCG
64 -GGTAATTTTACAAATC-GAGGGTATTTCAGTAATTTTACAAATCG
* * * * * *
69337958 AGGGTATTTCAGTAATTTTA-CAATCGATGGTATTTTGGTAATTTTATAAACTGGGGGCACTTTG
1 AGGGTATTTCAGTAATTTTATAAATCGAGGGTATTTCGGTAATTTTACAAACTGAGGGTA-TTTG
*
69338022 GTAATTTTACAAGTCGAGGGTATTTCAGTAATTTTACAAATCG
65 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCG
* * * * *
69338065 AGGGTATTTCAGTAATTTTATAAA-CGACGATATTTCGATAATTTTATAAACCG-GGAGTACTTT
1 AGGGTATTTCAGTAATTTTATAAATCGAGGGTATTTCGGTAATTTTACAAACTGAGG-GTA-TTT
* *
69338128 GGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTTACAAATCT
64 GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCG
*
69338172 AGGGTATTTCAGTAATTTTATAAA-CTGAGGGTATTTCGATAATTTTACAAA-TCGAGGGTATTT
1 AGGGTATTTCAGTAATTTTATAAATC-GAGGGTATTTCGGTAATTTTACAAACT-GAGGGTATTT
* * * *
69338235 CGATAATTTTGCAAA-CTGAGGGTATTTCGGTAATTTTACAAATTG
64 -GGTAATTTTACAAATC-GAGGGTATTTCAGTAATTTTACAAATCG
* * * ** *
69338280 AAGGTATTTTAGTAATTTTA-CAATCGACAGTATTTCGGTAATTTTATAAACT-AGGGGTACTTT
1 AGGGTATTTCAGTAATTTTATAAATCGAGGGTATTTCGGTAATTTTACAAACTGA-GGGTA-TTT
* *
69338343 GGTAATTTTACAAGTCGAGGGTATTTTAGTAATTTTACAAATCG
64 GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCG
* * * * *
69338387 AGGGTATTTTAGTAATTTTAT-AATCGACGGTATTTCGGTAATTTTATAAACCGGGGGTACTTTG
1 AGGGTATTTCAGTAATTTTATAAATCGAGGGTATTTCGGTAATTTTACAAACTGAGGGTA-TTTG
* *
69338451 GTAATTTTACAACT-G-GGGTATTTCAATAATTTTA
65 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTA
69338485 GTAAACTAAA
Statistics
Matches: 732, Mismatches: 88, Indels: 62
0.83 0.10 0.07
Matches are distributed among these distances:
105 17 0.02
106 10 0.01
107 495 0.68
108 206 0.28
109 4 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (107 bp):
AGGGTATTTCAGTAATTTTATAAATCGAGGGTATTTCGGTAATTTTACAAACTGAGGGTATTTGG
TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCG
Found at i:69337718 original size:161 final size:159
Alignment explanation
Indices: 69337540--69338484 Score: 998
Period size: 161 Copynumber: 5.9 Consensus size: 159
69337530 GGTATTTCAA
* *
69337540 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAA-CTGAGGGTATTTCGGTAATTTTACA
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATC-GAGGGTATTTCAGTAATTTTACA
** * * *
69337604 AATCGAGGGTATTTTAGTAATTTTAC-AATCGATAGTATTTCAGTAATTTTATAAATCGGGGGTA
65 AA-CGAGGGTATTTCGGTAATTTTACAAATCGAGAGTATTTCAGTAATTTTA-CAATCGAGGGTA
* *
69337668 CTTT-GGTAATTTTACAAGTCGAGGGTATTTTAG
128 -TTTCGGTAATTTTATAA-TCGAGGGTACTTTAG
* * * *
69337701 TAATTTTACAAATCGAGGGTATTTCAATAATTTTGCAAA-CTAAGGGTATTTCGGTAATTTTACA
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATC-GAGGGTATTTCAGTAATTTTACA
* * * **
69337765 AATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAATCGATAGTAT
65 AA-CGAGGGTATTTCGGTAATTTTACAAATCGAGAGTATTTCAGTAATTTTACAATCGAGGGTAT
* * *
69337830 TTCAGTAATTTTATAAATCGGGGGTACTTTGG
129 TTCGGTAATTTTAT-AATCGAGGGTACTTTAG
* * * *
69337862 TAATTTTACAAGTCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTCAATAATTTTGCAA
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAA
* * *
69337927 ACTAAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGATGGTATT
66 AC-GAGGGTATTTCGGTAATTTTACAAATCGAGAGTATTTCAGTAATTTTACAATCGAGGGTATT
* * * * *
69337992 TTGGTAATTTTATAAACTGGGGGCACTTTGG
130 TCGGTAATTTTATAATC-GAGGGTACTTTAG
* *
69338023 TAATTTTACAAGTCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTATAA
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAA
* * * * * * *
69338088 ACGACGATATTTCGATAATTTTATAAACCGGGAGTACTTT-GGTAATTTTACAAGTCGAGGGTAT
66 ACGAGGGTATTTCGGTAATTTTACAAATCGAGAGTA-TTTCAGTAATTTTACAA-TCGAGGGTAT
* * *
69338152 TTCAGTAATTTTACAAATCTAGGGTA-TTTCAG
129 TTCGGTAATTTTA-TAATCGAGGGTACTTT-AG
* *
69338184 TAATTTTATAAA-CTGAGGGTATTTC-GATAATTTTACAAATCGAGGGTATTTC-GATAATTTTG
1 TAATTTTACAAATC-GAGGGTATTTCAG-TAATTTTACAAATCGAGGGTATTTCAG-TAATTTTA
* * **
69338246 CAAACTGAGGGTATTTCGGTAATTTTACAAATTGA-AGGTATTTTAGTAATTTTACAATCGACAG
63 CAAAC-GAGGGTATTTCGGTAATTTTACAAATCGAGA-GTATTTCAGTAATTTTACAATCGAGGG
* * *
69338310 TATTTCGGTAATTTTATAAACTAGGGGTACTTTGG
126 TATTTCGGTAATTTTATAATCGA-GGGTACTTTAG
* * * *
69338345 TAATTTTACAAGTCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTATAA
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAA
* * * * * * *
69338410 TCGACGGTATTTCGGTAATTTTATAAACCGGGGGTACTTT-GGTAATTTTACAA-CTG-GGGTAT
66 ACGAGGGTATTTCGGTAATTTTACAAATCGAGAGTA-TTTCAGTAATTTTACAATC-GAGGGTAT
**
69338472 TTCAATAATTTTA
129 TTCGGTAATTTTA
69338485 GTAAACTAAA
Statistics
Matches: 671, Mismatches: 89, Indels: 50
0.83 0.11 0.06
Matches are distributed among these distances:
159 16 0.02
160 96 0.14
161 488 0.73
162 71 0.11
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.39
Consensus pattern (159 bp):
TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAA
ACGAGGGTATTTCGGTAATTTTACAAATCGAGAGTATTTCAGTAATTTTACAATCGAGGGTATTT
CGGTAATTTTATAATCGAGGGTACTTTAG
Found at i:69337726 original size:188 final size:187
Alignment explanation
Indices: 69337528--69338484 Score: 1116
Period size: 188 Copynumber: 5.1 Consensus size: 187
69337518 CTACCTTACA
* *
69337528 AGGGTATTTCAATAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAA-CTGAGGGTATTTC
1 AGGGTATTTCAATAATTTTACAAA-CGAGGGTATTTCGGTAATTTTACAAATC-GAGGGTATTTC
* **
69337592 GGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAATCGATAGTATTTCAGTAATTTTATA
64 AGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAATCGAGGGTATTTCAGTAATTTTATA
* *
69337657 AATCGGGGGTACTTT-GGTAATTTTACAAGTCGAGGGTATTTTAGTAATTTTACAAATCG
129 AATCGAGGGTA-TTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAATCG
* *
69337716 AGGGTATTTCAATAATTTTGCAAACTAAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCA
1 AGGGTATTTCAATAATTTTACAAAC-GAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCA
**
69337781 GTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAATCGATAGTATTTCAGTAATTTTATAA
65 GTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAATCGAGGGTATTTCAGTAATTTTATAA
* *
69337846 ATCGGGGGTACTTT-GGTAATTTTACAAGTCGAGGGTATTTTAGTAATTTTACAAATCG
130 ATCGAGGGTA-TTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAATCG
* *
69337904 AGGGTATTTCAATAATTTTGCAAACTAAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCA
1 AGGGTATTTCAATAATTTTACAAAC-GAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCA
* * * * * * * *
69337969 GTAATTTTAC-AATCGATGGTATTTTGGTAATTTTATAAACTGGGGGCACTTT-GGTAATTTTAC
65 GTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAATC-GAGGGTA-TTTCAGTAATTTTAT
* * * *
69338032 AAGTCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTATAAA-CG
128 AAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAATCG
* * * * *
69338091 ACGATATTTCGATAATTTTATAAACCG-GGAGTACTTT-GGTAATTTTACAAGTCGAGGGTATTT
1 AGGGTATTTCAATAATTTTACAAA-CGAGG-GTA-TTTCGGTAATTTTACAAATCGAGGGTATTT
* * * *
69338154 CAGTAATTTTACAAATCTAGGGTATTTCAGTAATTTTATAAACTGAGGGTATTTC-GATAATTTT
63 CAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAATC-GAGGGTATTTCAG-TAATTTT
* * * ** *
69338218 ACAAATCGAGGGTATTTCGATAATTTTGCAAA-CTGAGGGTATTTCGGTAATTTTACAAATTG
126 ATAAATCGAGGGTATTTCGGTAATTTTACAAATC-GAGGGTATTTTAGTAATTTTACAAATCG
* * * * ** * *
69338280 AAGGTATTTTAGTAATTTTACAATCGACAGTATTTCGGTAATTTTATAAA-CTAGGGGTACTTT-
1 AGGGTATTTCAATAATTTTACAAACGAGGGTATTTCGGTAATTTTACAAATCGA-GGGTA-TTTC
* * *
69338343 GGTAATTTTACAAGTCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTAT
64 AGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTAC-AATCGAGGGTATTTCAGTAATTTTAT
* * * * * * *
69338408 -AATCGACGGTATTTCGGTAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAACT-G
128 AAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAATCG
69338466 -GGGTATTTCAATAATTTTA
1 AGGGTATTTCAATAATTTTA
69338485 GTAAACTAAA
Statistics
Matches: 677, Mismatches: 72, Indels: 43
0.85 0.09 0.05
Matches are distributed among these distances:
185 16 0.02
186 3 0.00
187 148 0.22
188 481 0.71
189 29 0.04
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (187 bp):
AGGGTATTTCAATAATTTTACAAACGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAG
TAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAATCGAGGGTATTTCAGTAATTTTATAAA
TCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAATCG
Found at i:69338720 original size:26 final size:26
Alignment explanation
Indices: 69338689--69338796 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
69338679 TGAAATGCCC
*
69338689 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
69338715 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
69338741 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
69338767 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
69338793 ATCA
1 ATCA
69338797 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:69355125 original size:41 final size:40
Alignment explanation
Indices: 69354993--69355132 Score: 147
Period size: 40 Copynumber: 3.5 Consensus size: 40
69354983 TTGACGATAA
** * * * *
69354993 TTCGGCTACATATAGCACTTAGTGTGTGATTCAAAATAGC
1 TTCGGCTATGTATGGCACATAGTGTGCGATTCGAAATAGC
* * * * *
69355033 TTCAGCTATGTATAGCACTTTGTGTGCGATTCGAGATAGC
1 TTCGGCTATGTATGGCACATAGTGTGCGATTCGAAATAGC
69355073 TTCGGCTATGTATGGCACATAGTGTGCGAGATT-GAAATAGC
1 TTCGGCTATGTATGGCACATAGTGTGC--GATTCGAAATAGC
69355114 TTCGGCTATGTATTGGCAC
1 TTCGGCTATGTA-TGGCAC
69355133 TTAATGTTCG
Statistics
Matches: 85, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
40 56 0.66
41 19 0.22
42 10 0.12
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (40 bp):
TTCGGCTATGTATGGCACATAGTGTGCGATTCGAAATAGC
Found at i:69355145 original size:42 final size:41
Alignment explanation
Indices: 69355020--69355145 Score: 132
Period size: 40 Copynumber: 3.0 Consensus size: 41
69355010 CTTAGTGTGT
* * * *
69355020 GATTCAAAATAGCTTCAGCTATGTATAGCACTT-TGTGT-GC
1 GATTCGAAATAGCTTCGGCTATGTATGGCACTTATGT-TCGA
* * *
69355060 GATTCGAGATAGCTTCGGCTATGTATGGCACATAGTGTGCGA
1 GATTCGAAATAGCTTCGGCTATGTATGGCACTTA-TGTTCGA
69355102 GATT-GAAATAGCTTCGGCTATGTATTGGCACTTAATGTTCGA
1 GATTCGAAATAGCTTCGGCTATGTA-TGGCACTT-ATGTTCGA
69355144 GA
1 GA
69355146 ATTCCAGTAT
Statistics
Matches: 71, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
40 28 0.39
41 19 0.27
42 23 0.32
43 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (41 bp):
GATTCGAAATAGCTTCGGCTATGTATGGCACTTATGTTCGA
Found at i:69362270 original size:68 final size:67
Alignment explanation
Indices: 69362198--69362347 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
69362188 CATCATGTGT
* * * *
69362198 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
69362260 ATGTAG
62 ATGTAG
** * *
69362266 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
69362331 AG
66 AG
69362333 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
69362348 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:69362303 original size:64 final size:64
Alignment explanation
Indices: 69362222--69362405 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
69362212 AGACATTATG
* *
69362222 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
69362286 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
69362351 AA
63 AA
* * * *
69362353 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
69362406 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:69367863 original size:20 final size:21
Alignment explanation
Indices: 69367820--69367865 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
69367810 ACTGTTTTGT
69367820 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
69367840 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
69367859 TATGGGC
1 TATGGGC
69367866 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:69367958 original size:60 final size:60
Alignment explanation
Indices: 69367858--69367992 Score: 157
Period size: 60 Copynumber: 2.2 Consensus size: 60
69367848 AACTGTGTTA
* * *
69367858 ATATGGGCAAGGCCCAATATATCTCGACTTGTAATAGGGCTACGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATATCTCGAATTGTAATAGGGCTACGGCCCAGATTAATACTG
* * * *
69367918 ATATGGGCTAGGCCCAGTATA-CTCTGATATTGTAA-GGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATATCTC-GA-ATTGTAATAGGGCTACGGCCCAGATTAATACTG
*
69367978 ATATGGCCTAAGGCC
1 ATATGGGCT-AGGCC
69367993 GAGTTAACTT
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
59 3 0.05
60 50 0.78
61 11 0.17
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAATATATCTCGAATTGTAATAGGGCTACGGCCCAGATTAATACTG
Found at i:69372441 original size:7 final size:7
Alignment explanation
Indices: 69372429--69372454 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
69372419 ACTTTTTCAA
69372429 TCATCCC
1 TCATCCC
69372436 TCATCCC
1 TCATCCC
69372443 TCATCCC
1 TCATCCC
69372450 TCATC
1 TCATC
69372455 ATTCTCTCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.54, G:0.00, T:0.31
Consensus pattern (7 bp):
TCATCCC
Found at i:69376912 original size:27 final size:27
Alignment explanation
Indices: 69376882--69377059 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
69376872 ATATTGAGTC
* * * *
69376882 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
69376909 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69376936 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
69376964 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
69376991 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
69377018 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69377045 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69377060 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:69377021 original size:82 final size:81
Alignment explanation
Indices: 69376903--69377058 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
69376893 TGCTATATAA
* *
69376903 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
69376968 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
69376985 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
69377049 CACTTAGTGC
65 CACTTAGTGC
69377059 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:69384975 original size:27 final size:27
Alignment explanation
Indices: 69384945--69385122 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
69384935 ATATTGAGTC
* * * *
69384945 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
69384972 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69384999 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
69385027 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
69385054 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
69385081 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69385108 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69385123 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:69385084 original size:82 final size:81
Alignment explanation
Indices: 69384966--69385121 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
69384956 TGCTATATAA
* *
69384966 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
69385031 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
69385048 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
69385112 CACTTAGTGC
65 CACTTAGTGC
69385122 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:69388797 original size:45 final size:45
Alignment explanation
Indices: 69388733--69388821 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
69388723 TGTTGATTTG
* *
69388733 ATTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT
1 ATTATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAGAT
*
69388778 ATTATTCGGGCCTTTGAGCCTAGCAGGCTACAATGTCGGTGAGA
1 ATTATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAGA
69388822 GCAGGCTATA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.29
Consensus pattern (45 bp):
ATTATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAGAT
Found at i:69388824 original size:22 final size:22
Alignment explanation
Indices: 69388799--69388843 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
69388789 CTTTGAGCCT
*
69388799 AGCAGGCTACAATGTCGGTGAG
1 AGCAGGCTACAATGTCAGTGAG
*
69388821 AGCAGGCTATAATGTCAGTGAG
1 AGCAGGCTACAATGTCAGTGAG
69388843 A
1 A
69388844 TACTATTCGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.31, C:0.16, G:0.33, T:0.20
Consensus pattern (22 bp):
AGCAGGCTACAATGTCAGTGAG
Found at i:69388864 original size:67 final size:67
Alignment explanation
Indices: 69388754--69388879 Score: 200
Period size: 67 Copynumber: 1.9 Consensus size: 67
69388744 CTTTGAGCCT
* *
69388754 AGCAGGCTATAATGCCGGTGAGATATTATTCGGGCCTTTGAGCCTAGCAGGCTACAATGTCGGTG
1 AGCAGGCTATAATGCCAGTGAGATACTATTCGGGCCTTTGAGCCTAGCAGGCTACAATGTCGGTG
69388819 AG
66 AG
* *
69388821 AGCAGGCTATAATGTCAGTGAGATACTATTCGGG-CTTTCGAGCCTAGCAGGCTATAATG
1 AGCAGGCTATAATGCCAGTGAGATACTATTCGGGCCTTT-GAGCCTAGCAGGCTACAATG
69388880 CCAGTGAAAT
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
66 4 0.07
67 50 0.93
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (67 bp):
AGCAGGCTATAATGCCAGTGAGATACTATTCGGGCCTTTGAGCCTAGCAGGCTACAATGTCGGTG
AG
Found at i:69388885 original size:45 final size:43
Alignment explanation
Indices: 69388821--69388915 Score: 129
Period size: 45 Copynumber: 2.2 Consensus size: 43
69388811 TGTCGGTGAG
* * *
69388821 AGCAGGCTATAATGTCAGTGAGAT-ACTATTCGGGCTTTCGAGCCT
1 AGCAGGCTATAATGCCAGTGAAATGA-TA-TCGGGC-CTCGAGCCT
69388866 AGCAGGCTATAATGCCAGTGAAATGATATCGGGCCTCGAGCCT
1 AGCAGGCTATAATGCCAGTGAAATGATATCGGGCCTCGAGCCT
69388909 AGCAGGC
1 AGCAGGC
69388916 GAAATGTCGG
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
43 15 0.33
44 6 0.13
45 24 0.52
46 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.23
Consensus pattern (43 bp):
AGCAGGCTATAATGCCAGTGAAATGATATCGGGCCTCGAGCCT
Found at i:69398661 original size:7 final size:7
Alignment explanation
Indices: 69398649--69398674 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
69398639 ACTTTTTCAA
69398649 TCATCCC
1 TCATCCC
69398656 TCATCCC
1 TCATCCC
69398663 TCATCCC
1 TCATCCC
69398670 TCATC
1 TCATC
69398675 ATTCTCTCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.54, G:0.00, T:0.31
Consensus pattern (7 bp):
TCATCCC
Found at i:69402761 original size:41 final size:41
Alignment explanation
Indices: 69402580--69402869 Score: 161
Period size: 41 Copynumber: 7.1 Consensus size: 41
69402570 CAAAAATTGT
* * *** *
69402580 AAAACGCAGAGCAATAGCGGCGTTTTTGGTAAAACGCCACTA
1 AAAAC-CAGAGCATTAGTGGCGTTTTACCTAAAACGCCGCTA
* * * *** *
69402622 AAAA-TAGAGCAATAGCGGCGTTTTTGGTAAAACGCAGCTA
1 AAAACCAGAGCATTAGTGGCGTTTTACCTAAAACGCCGCTA
** * * * * ** *
69402662 AAAATTATAGAAATAGCGGCGTTTTACAGAAAACGCCGCCA
1 AAAACCAGAGCATTAGTGGCGTTTTACCTAAAACGCCGCTA
* * * * *
69402703 AAAAACATAGCAATAGTGGTGTTTTACCCAAAACGCCGCTA
1 AAAACCAGAGCATTAGTGGCGTTTTACCTAAAACGCCGCTA
* ** * *
69402744 AAAGCCAGAGCATTAGTGGCGCTTTT-GGTAAAACGTCACTA
1 AAAACCAGAGCATTAGTGGCG-TTTTACCTAAAACGCCGCTA
* * ** * * *** *
69402785 AAAACCAAAGAATTAGCAGTGCTTTGTGTAAAACGCCACTA
1 AAAACCAGAGCATTAGTGGCGTTTTACCTAAAACGCCGCTA
*
69402826 AAAACCAGAGCATTAGTGGCGTTTTACCAAAAACGCCGCTA
1 AAAACCAGAGCATTAGTGGCGTTTTACCTAAAACGCCGCTA
69402867 AAA
1 AAA
69402870 GTCATTTAAC
Statistics
Matches: 196, Mismatches: 49, Indels: 7
0.78 0.19 0.03
Matches are distributed among these distances:
40 40 0.20
41 148 0.76
42 8 0.04
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.21
Consensus pattern (41 bp):
AAAACCAGAGCATTAGTGGCGTTTTACCTAAAACGCCGCTA
Found at i:69402950 original size:15 final size:16
Alignment explanation
Indices: 69402877--69402955 Score: 62
Period size: 16 Copynumber: 5.2 Consensus size: 16
69402867 AAAGTCATTT
*
69402877 AACCCCTAAAACCCTA
1 AACCCCTAAAACACTA
*
69402893 AACCCC-AAAAAACATA
1 AACCCCTAAAACAC-TA
* *
69402909 AA-CACT--AA-TCTA
1 AACCCCTAAAACACTA
69402921 TAACCCCTAAAACACTA
1 -AACCCCTAAAACACTA
69402938 AACCCCT-AAACACTA
1 AACCCCTAAAACACTA
69402953 AAC
1 AAC
69402956 ACTAAACTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 15
0.70 0.08 0.21
Matches are distributed among these distances:
12 2 0.04
13 3 0.06
14 5 0.10
15 18 0.36
16 19 0.38
17 3 0.06
ACGTcount: A:0.51, C:0.35, G:0.00, T:0.14
Consensus pattern (16 bp):
AACCCCTAAAACACTA
Found at i:69402976 original size:44 final size:45
Alignment explanation
Indices: 69402876--69403000 Score: 153
Period size: 45 Copynumber: 2.7 Consensus size: 45
69402866 AAAAGTCATT
*
69402876 TAACCCCTAAAACCCTAAACCCCAAAAAACATAAACACTAATCTA
1 TAACCCCTAAAACCCTAAACCCCAAAAAACATAAACACTAAACTA
* * *
69402921 TAACCCCTAAAACACTAAACCCCTAAACAC-TAAACACTAAACTA
1 TAACCCCTAAAACCCTAAACCCCAAAAAACATAAACACTAAACTA
**
69402965 TAACCTTTAAAACCCTAATTAAACCCCAAAAAACAT
1 TAACCCCTAAAACCC----TAAACCCCAAAAAACAT
69403001 CATATGGATG
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
44 25 0.38
45 27 0.41
48 13 0.20
49 1 0.02
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18
Consensus pattern (45 bp):
TAACCCCTAAAACCCTAAACCCCAAAAAACATAAACACTAAACTA
Found at i:69402977 original size:22 final size:22
Alignment explanation
Indices: 69402908--69402969 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
69402898 CAAAAAACAT
* *
69402908 AAACACTAATCTATAACCCCTA
1 AAACACTAAACTATAACCACTA
** *
69402930 AAACACTAAACCCCTAAACACT-
1 AAACACTAAA-CTATAACCACTA
69402952 AAACACTAAACTATAACC
1 AAACACTAAACTATAACC
69402970 TTTAAAACCC
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
21 5 0.16
22 19 0.61
23 7 0.23
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18
Consensus pattern (22 bp):
AAACACTAAACTATAACCACTA
Found at i:69404361 original size:115 final size:115
Alignment explanation
Indices: 69403768--69404365 Score: 479
Period size: 114 Copynumber: 5.2 Consensus size: 115
69403758 AAAAATTGGA
* * * * ****
69403768 TTTAGCGGCGCTAGG-GAATAAACGCCGCTAAAGGGTT-TTCT-ATTATA-CAAGACGACACCGT
1 TTTAGCGGCGCTAGGTGAA-AAACGCCACTAAA-GTTTATTCTGTTTATATCAAAACGATGTAGT
** * * *
69403829 TTTCTTTGGATTTTTAGTGGCGTTTTAGGTTAAAACGCCAAAATAGGGTTG-A
64 TTT-TTTGGATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATTGGTTTGCC
* * * * * * * *
69403881 TTTAGCGGCGCAAGGTTATAAACGCCACTAAGGGTTATTTTGTTTAGATCAAAACGGTGTAGTTT
1 TTTAGCGGCGCTAGGTGAAAAACGCCACTAAAGTTTATTCTGTTTATATCAAAACGATGTAGTTT
* * * * * *
69403946 TTATGGATTTTTAGTGGCGTTTTTGGTTCAAACGCCACAATAGGTTTG-A
66 TTTTGGATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATTGGTTTGCC
* * * * *
69403995 TTTAGTGGCGCTAAGGT-ATAAACGCCACTAATGGTTAATT-TGTTTATATCAAAATGATGTAGT
1 TTTAGCGGCGCT-AGGTGAAAAACGCCACTAA-AGTTTATTCTGTTTATATCAAAACGATGTAGT
* * * * * * *
69404058 TTTATTCGATTATTAGTAGCGTTTTAGGGTAAAACGCCGGAA-TAGTTTCGCC
64 TTTTTTGGATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATTGGTTT-GCC
* * * * *
69404110 TTTAGCGGCGCTTGGTGATAAAATGCCACTAAA-TGTTATTCTGTTCATATGAAAAC-ATCGTCG
1 TTTAGCGGCGCTAGGTGA-AAAACGCCACTAAAGT-TTATTCTGTTTATATCAAAACGAT-GTAG
* * * *
69404173 TTTTTTTTGGATTTTTAGTGGCGTTTTAAGG-TGAAACACAGCAATTGATTTGCC
63 -TTTTTTTGGATTTTTAGTGGCGTTTT-AGGTTAAAACGCCGCAATTGGTTTGCC
* * * * *
69404227 TCTAGCGGCGCTACG-GAAAAACGGCACTAAAGTTTATTCTGTTTATATCAAAACGGTGTCGTTT
1 TTTAGCGGCGCTAGGTGAAAAACGCCACTAAAGTTTATTCTGTTTATATCAAAACGATGTAGTTT
** *
69404291 TGTTTGTTTTTTTAGTGGCG-TTTATGTTAAAACGCCGCAATTGGTTTGCC
66 T-TTTGGATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATTGGTTTGCC
69404341 TTTAGCGGCGCTAGGTG-AAAACGCC
1 TTTAGCGGCGCTAGGTGAAAAACGCC
69404366 GCAAATGTTA
Statistics
Matches: 387, Mismatches: 77, Indels: 41
0.77 0.15 0.08
Matches are distributed among these distances:
112 4 0.01
113 34 0.09
114 175 0.45
115 91 0.24
116 30 0.08
117 46 0.12
118 7 0.02
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (115 bp):
TTTAGCGGCGCTAGGTGAAAAACGCCACTAAAGTTTATTCTGTTTATATCAAAACGATGTAGTTT
TTTTGGATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATTGGTTTGCC
Found at i:69404499 original size:58 final size:59
Alignment explanation
Indices: 69404434--69404562 Score: 179
Period size: 59 Copynumber: 2.2 Consensus size: 59
69404424 ACACCGAGTT
* * ** * *
69404434 CCCCCTTCTCCCTGGTTTATTTCC-TCATTTTCCCTTCTTCGAATCCCTAAAATAATCA
1 CCCCCTTCTCCCTAGTTTATTCCCTTCATTTTCCCTAATTCAAAACCCTAAAATAATCA
*
69404492 CCCCCTTCTCCCTAGTTTATTCCCTTCATTTTCCCTAATTCAAAACCCTAAAATAATTA
1 CCCCCTTCTCCCTAGTTTATTCCCTTCATTTTCCCTAATTCAAAACCCTAAAATAATCA
*
69404551 CCCCTTTCTCCC
1 CCCCCTTCTCCC
69404563 CAATTTGAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
58 22 0.35
59 40 0.65
ACGTcount: A:0.21, C:0.38, G:0.03, T:0.38
Consensus pattern (59 bp):
CCCCCTTCTCCCTAGTTTATTCCCTTCATTTTCCCTAATTCAAAACCCTAAAATAATCA
Found at i:69406539 original size:37 final size:38
Alignment explanation
Indices: 69406452--69406540 Score: 102
Period size: 37 Copynumber: 2.5 Consensus size: 38
69406442 TGCTTTAATG
*
69406452 TATTTCAATATTTATC-AATTTTAAAATGATTTGCTTA
1 TATTTCAATATTTATCAAATTTTAAAATGATTTGCTAA
69406489 TATTTC---ATTTATCAACATTTTAAATAT-ATTT-C-AA
1 TATTTCAATATTTATCAA-ATTTTAAA-ATGATTTGCTAA
69406523 TATTTCAATATTTATCAA
1 TATTTCAATATTTATCAA
69406541 TTAATATAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 12
0.78 0.02 0.21
Matches are distributed among these distances:
34 14 0.31
35 2 0.04
36 12 0.27
37 17 0.38
ACGTcount: A:0.37, C:0.10, G:0.02, T:0.51
Consensus pattern (38 bp):
TATTTCAATATTTATCAAATTTTAAAATGATTTGCTAA
Found at i:69406828 original size:25 final size:24
Alignment explanation
Indices: 69406800--69406873 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 24
69406790 TTTATTTTGG
69406800 ATTAATCAGGACACAATTTTTTTAA
1 ATTAATCA-GACACAATTTTTTTAA
**
69406825 ATT-A-C-GACAC-ATATTTTGCAA
1 ATTAATCAGACACAAT-TTTTTTAA
*
69406846 TTTAATCACGACACAA-TTTTTTAA
1 ATTAATCA-GACACAATTTTTTTAA
69406870 ATTA
1 ATTA
69406874 CATATTTTGG
Statistics
Matches: 37, Mismatches: 6, Indels: 13
0.66 0.11 0.23
Matches are distributed among these distances:
20 2 0.05
21 13 0.35
22 1 0.03
23 2 0.05
24 10 0.27
25 8 0.22
26 1 0.03
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (24 bp):
ATTAATCAGACACAATTTTTTTAA
Found at i:69406961 original size:9 final size:9
Alignment explanation
Indices: 69406949--69406979 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
69406939 ATATCATATA
69406949 ATAACTTAC
1 ATAACTTAC
69406958 ATAACTTAC
1 ATAACTTAC
*
69406967 AAAACTTAC
1 ATAACTTAC
69406976 ATAA
1 ATAA
69406980 TACATAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.52, C:0.19, G:0.00, T:0.29
Consensus pattern (9 bp):
ATAACTTAC
Done.