Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 205 of 235
Found at i:69757869 original size:85 final size:85
Alignment explanation
Indices: 69757701--69757870 Score: 209
Period size: 85 Copynumber: 2.0 Consensus size: 85
69757691 GTCTGTGAGA
* * * *
69757701 TCGTGTACGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACATGTAAGACCATGTTTGGGA
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTTACATGTAAGACCACGTTTGGGA
* *
69757766 CATCAGCATCGTATTTGATT
66 CATCAGCATCATACTTGATT
* *
69757786 TCGTGTAAGACCCTGTCTGGGATAGAGGCATCGATATTGA-A-TTACATGTAAGACCACGTTTGG
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATCG--ATTGAGATTTACATGTAAGACCACGTTTGG
* * *
69757849 GACGTCGGCATTATACTTGATT
64 GACATCAGCATCATACTTGATT
69757871 ATGAGCATCT
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
85 66 0.92
86 1 0.01
87 5 0.07
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.31
Consensus pattern (85 bp):
TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTTACATGTAAGACCACGTTTGGGA
CATCAGCATCATACTTGATT
Found at i:69763965 original size:27 final size:26
Alignment explanation
Indices: 69763935--69764014 Score: 72
Period size: 27 Copynumber: 3.0 Consensus size: 26
69763925 TGACTATGTC
*
69763935 ACATTCACTATTACTGGTGGCTTTGCT
1 ACATT-ACTATTACTGGTAGCTTTGCT
* * *
69763962 ACATTTACTGCTT-CTGGCAGCTATGCT
1 ACA-TTACT-ATTACTGGTAGCTTTGCT
* *
69763989 GCATTATTATTACTGGTAGCTTTGCT
1 ACATTACTATTACTGGTAGCTTTGCT
69764015 GTGATATTTG
Statistics
Matches: 41, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
25 2 0.05
26 16 0.39
27 19 0.46
28 4 0.10
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.41
Consensus pattern (26 bp):
ACATTACTATTACTGGTAGCTTTGCT
Found at i:69764198 original size:33 final size:34
Alignment explanation
Indices: 69764161--69764228 Score: 102
Period size: 33 Copynumber: 2.0 Consensus size: 34
69764151 CCCACACTGC
* *
69764161 TACTGTATAGGGCTAAGGCCTAGACTG-TATTGA
1 TACTGAATAGGGCTAAGGCCTAGAATGTTATTGA
*
69764194 TACTGAATAGGGCTCAGGCCTAGAATGTTATTGA
1 TACTGAATAGGGCTAAGGCCTAGAATGTTATTGA
69764228 T
1 T
69764229 CTGGGCTTAG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
33 24 0.77
34 7 0.23
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (34 bp):
TACTGAATAGGGCTAAGGCCTAGAATGTTATTGA
Found at i:69768841 original size:19 final size:17
Alignment explanation
Indices: 69768809--69768845 Score: 56
Period size: 19 Copynumber: 2.1 Consensus size: 17
69768799 CTCAGAAACA
69768809 CCTTTGAAAAAATTTTT
1 CCTTTGAAAAAATTTTT
69768826 CCTTTAGAACAAAATTTTT
1 CCTTT-GAA-AAAATTTTT
69768845 C
1 C
69768846 TCAAAATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.28
18 3 0.17
19 10 0.56
ACGTcount: A:0.35, C:0.16, G:0.05, T:0.43
Consensus pattern (17 bp):
CCTTTGAAAAAATTTTT
Found at i:69772415 original size:39 final size:39
Alignment explanation
Indices: 69772256--69772405 Score: 221
Period size: 39 Copynumber: 3.9 Consensus size: 39
69772246 TGCATGATAT
*
69772256 TGGGAATATATCCGGACATG-GGTCCGCAGGCTATATGC
1 TGGGAATATATCCGGACATGAAGTCCGCAGGCTATATGC
* *
69772294 TGGGAATATATTCGGACATGAGGTCCGCAGGCTATATGC
1 TGGGAATATATCCGGACATGAAGTCCGCAGGCTATATGC
* * *
69772333 TGGGAATATATCCGGACTTGAAGTCCGTAGGCTATGTGC
1 TGGGAATATATCCGGACATGAAGTCCGCAGGCTATATGC
* *
69772372 TGGAAATATATCCGGACTTGAAGTCCGCAGGCTA
1 TGGGAATATATCCGGACATGAAGTCCGCAGGCTA
69772406 CGTGTTGGAA
Statistics
Matches: 103, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
38 19 0.18
39 84 0.82
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (39 bp):
TGGGAATATATCCGGACATGAAGTCCGCAGGCTATATGC
Found at i:69782387 original size:40 final size:40
Alignment explanation
Indices: 69781906--69782373 Score: 788
Period size: 40 Copynumber: 11.7 Consensus size: 40
69781896 TATTCGGATG
69781906 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
69781946 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
69781986 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
69782026 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
69782066 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
69782106 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
69782146 ATAACCGGGCTAAGTCCCGAAGGCATTTGT--GA-TT-CGGAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC---T
* *
69782185 GATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGA--
1 -ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
69782224 ATAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAA--CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
69782265 ATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
69782305 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
69782345 ATAACTGGGCTAAGTCTCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
69782374 AGCAAGTAGC
Statistics
Matches: 407, Mismatches: 8, Indels: 26
0.92 0.02 0.06
Matches are distributed among these distances:
36 1 0.00
37 2 0.00
38 6 0.01
39 32 0.08
40 360 0.88
41 4 0.01
42 1 0.00
43 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:69790333 original size:40 final size:40
Alignment explanation
Indices: 69790278--69790785 Score: 794
Period size: 40 Copynumber: 12.7 Consensus size: 40
69790268 TATTCGGATG
* *
69790278 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAATCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
* *
69790318 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAATCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
69790358 ATAATCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
1 ATAATCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
69790398 ATAATCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
1 ATAATCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
69790438 ATAATCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
1 ATAATCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
69790478 ATAATCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
1 ATAATCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
69790518 ATAATCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
1 ATAATCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
69790558 ATAATCGGGCTAAGTCCTGAAGGCATTTGT--GA-TT-CGGAT
1 ATAATCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTAC---T
* * * *
69790597 GATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 -ATAATCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
* * *
69790638 A-ATTCTGGGCTACG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAATC-GGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
* *
69790677 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAATCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
69790717 ATAATCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
1 ATAATCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
* *
69790757 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAATCGGGCTAAGTCCTGAAGGCATTTG
69790786 AACAAGTAGC
Statistics
Matches: 439, Mismatches: 18, Indels: 22
0.92 0.04 0.05
Matches are distributed among these distances:
36 1 0.00
37 2 0.00
38 2 0.00
39 34 0.08
40 396 0.90
41 1 0.00
42 1 0.00
43 1 0.00
44 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
ATAATCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
Found at i:69795230 original size:19 final size:20
Alignment explanation
Indices: 69795206--69795243 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
69795196 GGTACCACCA
69795206 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
69795225 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
69795244 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:69803021 original size:46 final size:45
Alignment explanation
Indices: 69802923--69803013 Score: 130
Period size: 46 Copynumber: 2.0 Consensus size: 45
69802913 AACCCGCCCC
* *
69802923 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-ATGCGCAACCA
* *
69802969 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGAATGCGCAACCA
69803013 T
1 T
69803014 CCTAGTGACA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 9 0.22
46 32 0.78
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGAATGCGCAACCA
Found at i:69809427 original size:27 final size:27
Alignment explanation
Indices: 69809397--69809454 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
69809387 ATAGACAAAC
*
69809397 TGACCAAAATACCCCTGTAGGGTAAAA
1 TGACCAAAATACCCCTATAGGGTAAAA
** * *
69809424 TGACCGTAATGCCCCTATATGGTAAAA
1 TGACCAAAATACCCCTATAGGGTAAAA
69809451 TGAC
1 TGAC
69809455 GATTATGCCC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.22
Consensus pattern (27 bp):
TGACCAAAATACCCCTATAGGGTAAAA
Found at i:69820699 original size:22 final size:22
Alignment explanation
Indices: 69820674--69820717 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
69820664 ATAAGTATAA
69820674 TCATATAATGATGTCTTTCATG
1 TCATATAATGATGTCTTTCATG
69820696 TCATATAATGATGTCTTTCATG
1 TCATATAATGATGTCTTTCATG
69820718 AATGATGTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.45
Consensus pattern (22 bp):
TCATATAATGATGTCTTTCATG
Found at i:69824449 original size:45 final size:45
Alignment explanation
Indices: 69824384--69824542 Score: 189
Period size: 45 Copynumber: 3.6 Consensus size: 45
69824374 CCATAGGATT
*
69824384 TCAATATA--TGTTTTCGTGTAAGACTACGTATGGGATGTTGGCA
1 TCAATATATGTGTTTTCGTGTAAGACTACGTATGGGACGTTGGCA
* * * * * *
69824427 TCAATATATGTGTTTTCATGTAAAACCACATTTGGGACGTCGGCA
1 TCAATATATGTGTTTTCGTGTAAGACTACGTATGGGACGTTGGCA
* *
69824472 TCGATATATGTGTTTTCGTGTAAGACTACGTCTGGGACGTTGGCA
1 TCAATATATGTGTTTTCGTGTAAGACTACGTATGGGACGTTGGCA
* *
69824517 TCGATATATGTAG-TTACGTGTAAGAC
1 TCAATATATGT-GTTTTCGTGTAAGAC
69824543 CATGTCTGGG
Statistics
Matches: 98, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
43 8 0.08
45 89 0.91
46 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.35
Consensus pattern (45 bp):
TCAATATATGTGTTTTCGTGTAAGACTACGTATGGGACGTTGGCA
Found at i:69824550 original size:45 final size:45
Alignment explanation
Indices: 69824398--69824646 Score: 185
Period size: 45 Copynumber: 5.7 Consensus size: 45
69824388 TATATGTTTT
* * * * *
69824398 CGTGTAAGACTACGTATGGGATGTTGGCATCAATATATGT-GTTTT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTAG-TTA
* * * * * *
69824443 CATGTAAAACCACATTTGGGACGTCGGCATCGATATATGT-GTTTT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTAG-TTA
*
69824488 CGTGTAAGACTACGTCTGGGACGTTGGCATCGATATATGTAGTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTAGTTA
* * * *
69824533 CGTGTAAGACCATGTCTGGGACATCGGCATCG-TATTTG-A-TT-
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTAGTTA
* * ** *
69824574 CGTGTGAGACC-CTATCTGGGACAG-TGGCATCGATATGCG-A-TGA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATATGTAGTTA
* *
69824617 CATGTAAGACCATGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
69824647 TGTTTGATAT
Statistics
Matches: 165, Mismatches: 32, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
41 25 0.15
42 9 0.05
43 24 0.15
44 5 0.03
45 101 0.61
46 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (45 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTAGTTA
Found at i:69824553 original size:90 final size:88
Alignment explanation
Indices: 69824387--69824646 Score: 257
Period size: 90 Copynumber: 3.0 Consensus size: 88
69824377 TAGGATTTCA
* * * * *
69824387 ATATATGTTTTCGTGTAAGACTACGTATGGGATGTTGGCATCAATATATGT-GTTTTCATGTAAA
1 ATAT-TGTTTTCGTGTAAGACTACGTCTGGGACGTTGGCATCGATATATGTAG-TTACATGTAAG
** *
69824451 ACCACATTTGGGACGTCGGCATCGAT
64 ACCATGTCTGGGACGTCGGCATCG-T
*
69824477 ATATGTGTTTTCGTGTAAGACTACGTCTGGGACGTTGGCATCGATATATGTAGTTACGTGTAAGA
1 ATAT-TGTTTTCGTGTAAGACTACGTCTGGGACGTTGGCATCGATATATGTAGTTACATGTAAGA
*
69824542 CCATGTCTGGGACATCGGCATCGT
65 CCATGTCTGGGACGTCGGCATCGT
* * ** *
69824566 AT-TTG-ATTCGTGTGAGACCCTA--TCTGGGACAG-TGGCATCGATATGCG-A-TGACATGTAA
1 ATATTGTTTTCGTGTAAGA--CTACGTCTGGGAC-GTTGGCATCGATATATGTAGTTACATGTAA
*
69824624 GACCATGTCTGGGACGTTGGCAT
63 GACCATGTCTGGGACGTCGGCAT
69824647 TGTTTGATAT
Statistics
Matches: 147, Mismatches: 19, Indels: 14
0.82 0.11 0.08
Matches are distributed among these distances:
84 29 0.20
85 1 0.01
86 31 0.21
87 3 0.02
88 4 0.03
89 3 0.02
90 75 0.51
91 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (88 bp):
ATATTGTTTTCGTGTAAGACTACGTCTGGGACGTTGGCATCGATATATGTAGTTACATGTAAGAC
CATGTCTGGGACGTCGGCATCGT
Found at i:69825059 original size:20 final size:20
Alignment explanation
Indices: 69825008--69825069 Score: 83
Period size: 20 Copynumber: 3.1 Consensus size: 20
69824998 TCGGCCATAA
69825008 ATAAGTTTATATGTGAAAGT
1 ATAAGTTTATATGTGAAAGT
* *
69825028 ATATG-ATATATGTGAAA-T
1 ATAAGTTTATATGTGAAAGT
69825046 CATAAGTTTATATGTGAAAGT
1 -ATAAGTTTATATGTGAAAGT
69825067 ATA
1 ATA
69825070 CTTAGCTTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
18 1 0.03
19 15 0.43
20 18 0.51
21 1 0.03
ACGTcount: A:0.42, C:0.02, G:0.18, T:0.39
Consensus pattern (20 bp):
ATAAGTTTATATGTGAAAGT
Found at i:69827589 original size:17 final size:18
Alignment explanation
Indices: 69827567--69827602 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
69827557 AAAAATTGGC
69827567 CGTGTGGGCC-ACACGGG
1 CGTGTGGGCCGACACGGG
69827584 CGTGTGGGCCGACACGGG
1 CGTGTGGGCCGACACGGG
69827602 C
1 C
69827603 AAGCCACATG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.11, C:0.31, G:0.47, T:0.11
Consensus pattern (18 bp):
CGTGTGGGCCGACACGGG
Found at i:69829380 original size:47 final size:46
Alignment explanation
Indices: 69829266--69829573 Score: 217
Period size: 47 Copynumber: 6.6 Consensus size: 46
69829256 ATACGCGTGA
* * *
69829266 TGATGCATGTCCCAGACATGTCTTACACTAGCACAACTCT-T-AGTC
1 TGATGCATGTCCCAGACATGTCTTACACTAGC-TATCTCTGTGAGGC
* * *
69829311 -GATTCATGTCCCAAACACGTCTTACACTAGCTATCTCTGTCGAGGC
1 TGATGCATGTCCCAGACATGTCTTACACTAGCTATCTCTGT-GAGGC
*
69829357 TGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTGT---GC
1 TGATGCATGTCCCAGACATGTCTTACACTAG--CT-ATCTCTGTGAGGC
* * *
69829403 CGATGCCATGTCCCAGACATGGTCGTACACTAGCTATCAT-AGT-ATGGC
1 TGATG-CATGTCCCAGACAT-GTCTTACACTAGCTATC-TCTGTGA-GGC
* * **
69829451 TGATGCATGTCCCAGACATATCTTACACTAGCCCT-TGTCTG-GATAC
1 TGATGCATGTCCCAGACATGTCTTACACTAG--CTATCTCTGTGAGGC
* * * * *
69829497 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG-GTC
1 TGATG-CATGTCCCAGACAT-GTCTTACACTAGCTATC-T-CTGTGAGGC
*
69829546 -GAAGCATGTCCCAGACATGTCTTACACT
1 TGATGCATGTCCCAGACATGTCTTACACT
69829574 GGCGCACAAA
Statistics
Matches: 211, Mismatches: 29, Indels: 45
0.74 0.10 0.16
Matches are distributed among these distances:
43 5 0.02
44 29 0.14
45 5 0.02
46 40 0.19
47 86 0.41
48 32 0.15
49 5 0.02
50 9 0.04
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
TGATGCATGTCCCAGACATGTCTTACACTAGCTATCTCTGTGAGGC
Found at i:69829467 original size:94 final size:93
Alignment explanation
Indices: 69829213--69829573 Score: 371
Period size: 94 Copynumber: 3.9 Consensus size: 93
69829203 TGGGATATAT
* * * *
69829213 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TACGCGTGATGATGCATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATAGTA--TG-GCTGATGCATGTC
*
69829277 CCAGACATGTCTTACACTAGCA-CAACTCT-
63 CCAGACATGTCTTACACTAGCACCATCTCTG
* * * * *
69829306 TAGTCGAT-TCATGTCCCAAACA-CGTCTTACACTAGCTATC-TCTGTCGA-GGCTGATGCATGT
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCAT-AGT--ATGGCTGATGCATGT
*
69829367 CCCAGACATGTCTTACACTGGCACTCATCTCTG
62 CCCAGACATGTCTTACACTAGCAC-CATCTCTG
*
69829400 TGCCGATGCCATGTCCCAGACATGGTCGTACACTAGCTATCATAGTATGGCTGATGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATAGTATGGCTGATGCATGTCCCA
* * *
69829465 GACATATCTTACACTAGC-CCTTGTCTGG
66 GACATGTCTTACACTAGCACCATCTCT-G
* * * * * *
69829493 ATACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGG-TCGAAGCATGTCC
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATAGTATGGCT-GATGCATGTCC
69829557 CAGACATGTCTTACACT
64 CAGACATGTCTTACACT
69829574 GGCGCACAAA
Statistics
Matches: 225, Mismatches: 28, Indels: 29
0.80 0.10 0.10
Matches are distributed among these distances:
91 34 0.15
92 21 0.09
93 29 0.13
94 121 0.54
95 19 0.08
96 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (93 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATAGTATGGCTGATGCATGTCCCA
GACATGTCTTACACTAGCACCATCTCTG
Found at i:69829554 original size:141 final size:138
Alignment explanation
Indices: 69829215--69829573 Score: 374
Period size: 141 Copynumber: 2.6 Consensus size: 138
69829205 GGATATATTG
* *
69829215 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGCGTGAT-GATGCATGTCCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-A--TGTGGTCGATGCATGTCCC
* * *
69829279 AGACATGTCTTACACTAGCACAACTCTTAGTCGATTCATGTCCCAAACACGTCTTACACTAGCTA
63 AGACATGTCTTACACTAGCACAACTCATAGTCGATGCATGTCCCAAACACATCTTACACTAGCTA
*
69829344 TCTCTGTCGAGG
128 TCTCTG-CGAGA
* * * * *
69829356 CTGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCAT-CTCTGTGCCGATGCCATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG-GTCGATG-CATGTCCCA
* * * * *
69829418 GACATGGTCGTACACTAGCTATCATAGT-AT-GGCTGATGCATGTCCCAGACATATCTTACACTA
64 GACAT-GTCTTACACTAGC-A-CA-ACTCATAGTC-GATGCATGTCCCAAACACATCTTACACTA
* *
69829481 GCCCT-TGTCTG-GATA
124 G--CTATCTCTGCGAGA
*
69829496 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGTCGAAGCATGTCCCAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGTCGATGCATGTCCCAGA
69829561 CATGTCTTACACT
66 CATGTCTTACACT
69829574 GGCGCACAAA
Statistics
Matches: 180, Mismatches: 25, Indels: 27
0.78 0.11 0.12
Matches are distributed among these distances:
135 2 0.01
137 4 0.02
138 14 0.08
139 30 0.17
140 33 0.18
141 62 0.34
142 30 0.17
143 5 0.03
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (138 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGTCGATGCATGTCCCAGA
CATGTCTTACACTAGCACAACTCATAGTCGATGCATGTCCCAAACACATCTTACACTAGCTATCT
CTGCGAGA
Found at i:69831704 original size:25 final size:25
Alignment explanation
Indices: 69831656--69831704 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
69831646 AAACCAAAAA
*
69831656 TACTATGGATAGTATATTCTGAAAC
1 TACTATGGATAGTATATTCAGAAAC
*
69831681 TACTATAGG-TAGTATATTGAGAAA
1 TACTAT-GGATAGTATATTCAGAAA
69831705 ACACACTAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.39, C:0.08, G:0.18, T:0.35
Consensus pattern (25 bp):
TACTATGGATAGTATATTCAGAAAC
Found at i:69838247 original size:23 final size:23
Alignment explanation
Indices: 69838221--69838275 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
69838211 AGGTTGTAAA
* *
69838221 AGCTTACTGCTTCAGCTC-ATTAG
1 AGCTTACTGATTCAACTCGA-TAG
*
69838244 AGCTTACCGATTCAACTCGATAG
1 AGCTTACTGATTCAACTCGATAG
69838267 AGCTTACTG
1 AGCTTACTG
69838276 TTTATTAGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (23 bp):
AGCTTACTGATTCAACTCGATAG
Found at i:69838558 original size:40 final size:40
Alignment explanation
Indices: 69838493--69838625 Score: 151
Period size: 40 Copynumber: 3.3 Consensus size: 40
69838483 TATTTTATTA
* *
69838493 ATGGATGAATTACTATTGAATTGAATGAATTATTGTTGAT
1 ATGGATGAATTACTATTGAAATGAATGAATTATTGTTAAT
* * *
69838533 ATGGGTGAATTACTATTGAAATGAATGAATTACTATTAAT
1 ATGGATGAATTACTATTGAAATGAATGAATTATTGTTAAT
* * * * * *
69838573 ATAGATGAATTACTGTTGATATGGATAAATTATTGTTATT
1 ATGGATGAATTACTATTGAAATGAATGAATTATTGTTAAT
69838613 ACT-GATGAATTAC
1 A-TGGATGAATTAC
69838626 GGGTTATACG
Statistics
Matches: 78, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 77 0.99
41 1 0.01
ACGTcount: A:0.37, C:0.05, G:0.18, T:0.41
Consensus pattern (40 bp):
ATGGATGAATTACTATTGAAATGAATGAATTATTGTTAAT
Found at i:69838604 original size:60 final size:60
Alignment explanation
Indices: 69838492--69838604 Score: 158
Period size: 60 Copynumber: 1.9 Consensus size: 60
69838482 ATATTTTATT
* * * *
69838492 AATGGATGAATTACTATTGAATTGAATGAATTATTGTTGATATGGGTGAATTACTATTGA
1 AATGAATGAATTACTATTGAATTGAATGAATTACTGTTGATATGGATAAATTACTATTGA
69838552 AATGAATGAATTACTATT-AATAT-AGATGAATTACTGTTGATATGGATAAATTA
1 AATGAATGAATTACTATTGAAT-TGA-ATGAATTACTGTTGATATGGATAAATTA
69838605 TTGTTATTAC
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
59 4 0.09
60 43 0.91
ACGTcount: A:0.39, C:0.04, G:0.19, T:0.39
Consensus pattern (60 bp):
AATGAATGAATTACTATTGAATTGAATGAATTACTGTTGATATGGATAAATTACTATTGA
Found at i:69838609 original size:20 final size:20
Alignment explanation
Indices: 69838493--69838609 Score: 110
Period size: 20 Copynumber: 5.8 Consensus size: 20
69838483 TATTTTATTA
*
69838493 ATGGATGAATTACTATTGA-
1 ATGGATGAATTACTGTTGAT
* *
69838512 ATTGAATGAATTATTGTTGAT
1 A-TGGATGAATTACTGTTGAT
* * *
69838533 ATGGGTGAATTACTATTGAA
1 ATGGATGAATTACTGTTGAT
* * *
69838553 ATGAATGAATTACTATTAAT
1 ATGGATGAATTACTGTTGAT
*
69838573 ATAGATGAATTACTGTTGAT
1 ATGGATGAATTACTGTTGAT
* *
69838593 ATGGATAAATTATTGTT
1 ATGGATGAATTACTGTT
69838610 ATTACTGATG
Statistics
Matches: 77, Mismatches: 19, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
19 1 0.01
20 75 0.97
21 1 0.01
ACGTcount: A:0.37, C:0.03, G:0.19, T:0.41
Consensus pattern (20 bp):
ATGGATGAATTACTGTTGAT
Found at i:69838621 original size:60 final size:59
Alignment explanation
Indices: 69838483--69838625 Score: 150
Period size: 60 Copynumber: 2.4 Consensus size: 59
69838473 TAATACAGAA
* * *
69838483 TATTTTATTAATGGATGAATTACTATTGAATTGAATGAATTATTGTTGATATGGGTGAAT
1 TATTTTATTAAT-GATGAATTACTATTGAATTGAATGAATTACTGTTGATATGGATAAAT
*
69838543 TA--CTATTGAAATGAATGAATTACTATT-AATAT-AGATGAATTACTGTTGATATGGATAAAT
1 TATTTTATT--AATG-ATGAATTACTATTGAAT-TGA-ATGAATTACTGTTGATATGGATAAAT
*
69838603 TATTGTTATTACTGATGAATTAC
1 TATT-TTATTAATGATGAATTAC
69838626 GGGTTATACG
Statistics
Matches: 69, Mismatches: 6, Indels: 16
0.76 0.07 0.18
Matches are distributed among these distances:
58 4 0.06
59 5 0.07
60 53 0.77
61 3 0.04
63 4 0.06
ACGTcount: A:0.36, C:0.04, G:0.17, T:0.43
Consensus pattern (59 bp):
TATTTTATTAATGATGAATTACTATTGAATTGAATGAATTACTGTTGATATGGATAAAT
Found at i:69840695 original size:6 final size:6
Alignment explanation
Indices: 69840684--69840720 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
69840674 TGAGTATTGG
69840684 TTTTAT TTTTAT TTTTAT TTTTAT TTTTA- TTTTAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT
69840721 GGTTAATTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 5 0.17
6 25 0.83
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTAT
Found at i:69856221 original size:46 final size:46
Alignment explanation
Indices: 69856154--69856275 Score: 181
Period size: 46 Copynumber: 2.7 Consensus size: 46
69856144 TGAGCATCCG
* * *
69856154 AACTCGTTGAGTTGAGTCCGAGTTCACTTATATATGTGAATGTCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATGCCCA
* *
69856200 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATGCCCA
* *
69856246 AGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
69856276 GGGGCGGGTT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 69 1.00
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.32
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATGCCCA
Found at i:69858791 original size:15 final size:15
Alignment explanation
Indices: 69858771--69858799 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
69858761 ATTTTGTGTG
69858771 ATGTTTTATTATAAA
1 ATGTTTTATTATAAA
69858786 ATGTTTTATTATAA
1 ATGTTTTATTATAA
69858800 GATGAATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (15 bp):
ATGTTTTATTATAAA
Found at i:69861329 original size:40 final size:40
Alignment explanation
Indices: 69861274--69861620 Score: 624
Period size: 40 Copynumber: 8.7 Consensus size: 40
69861264 ATTTGAATAC
*
69861274 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
*
69861314 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
69861354 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
69861394 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
69861434 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
69861474 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
69861514 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
* *
69861554 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTGATAT
* *
69861594 ACCCGGGTTAAGACCCGAAGGCAATTG
1 ATCCGGGCTAAGACCCGAAGGCAATTG
69861621 AGCTTGTGGT
Statistics
Matches: 300, Mismatches: 5, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
39 3 0.01
40 294 0.98
41 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
Found at i:69879853 original size:57 final size:57
Alignment explanation
Indices: 69879792--69879912 Score: 147
Period size: 57 Copynumber: 2.1 Consensus size: 57
69879782 AGTACGGATG
* *
69879792 GGTAATCTAGATC-AAGCTCT-TTAGAGCATATGTCATAAAAAGGATTTACCCTGGACT
1 GGTAATCTAGA-CGAAGCTCTATT-GAGAATATATCATAAAAAGGATTTACCCTGGACT
* * * * *
69879849 GGTAATCTTGACGAAGCTCTATTGAGAATATATTATAGACAGGATTTAGCCTGGACT
1 GGTAATCTAGACGAAGCTCTATTGAGAATATATCATAAAAAGGATTTACCCTGGACT
69879906 GGTAATC
1 GGTAATC
69879913 CTATTGTCTA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
56 1 0.02
57 52 0.95
58 2 0.04
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (57 bp):
GGTAATCTAGACGAAGCTCTATTGAGAATATATCATAAAAAGGATTTACCCTGGACT
Found at i:69884194 original size:14 final size:14
Alignment explanation
Indices: 69884175--69884204 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
69884165 TGATTGTTTT
69884175 TAATCTAATTTAAC
1 TAATCTAATTTAAC
69884189 TAATCTAATTTAAC
1 TAATCTAATTTAAC
69884203 TA
1 TA
69884205 CGAATGCAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.13, G:0.00, T:0.43
Consensus pattern (14 bp):
TAATCTAATTTAAC
Found at i:69886550 original size:16 final size:17
Alignment explanation
Indices: 69886519--69886551 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
69886509 TTCATAAGCA
*
69886519 TATATCACTCATTTCAT
1 TATATCAATCATTTCAT
69886536 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
69886552 GCTCCATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.33, C:0.18, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:69886966 original size:46 final size:46
Alignment explanation
Indices: 69886831--69886966 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
69886821 TTTGACATGA
* * * * * *
69886831 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
69886877 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
69886923 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
69886967 AGTGCACACT
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
45 4 0.05
46 79 0.95
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:69888949 original size:123 final size:123
Alignment explanation
Indices: 69888730--69888977 Score: 496
Period size: 123 Copynumber: 2.0 Consensus size: 123
69888720 TCAATAATAA
69888730 CAAACTTAAAAACATATTGAAATCTTGATATACTTACCTTGTTCTATTGATACTAATCTTTAACT
1 CAAACTTAAAAACATATTGAAATCTTGATATACTTACCTTGTTCTATTGATACTAATCTTTAACT
69888795 TGATTTTCTCTCTCCTCCAGCTTCTATTTCTTGAATCCAACTTGATATTCTAACTCCC
66 TGATTTTCTCTCTCCTCCAGCTTCTATTTCTTGAATCCAACTTGATATTCTAACTCCC
69888853 CAAACTTAAAAACATATTGAAATCTTGATATACTTACCTTGTTCTATTGATACTAATCTTTAACT
1 CAAACTTAAAAACATATTGAAATCTTGATATACTTACCTTGTTCTATTGATACTAATCTTTAACT
69888918 TGATTTTCTCTCTCCTCCAGCTTCTATTTCTTGAATCCAACTTGATATTCTAACTCCC
66 TGATTTTCTCTCTCCTCCAGCTTCTATTTCTTGAATCCAACTTGATATTCTAACTCCC
69888976 CA
1 CA
69888978 TGGTCTCCTT
Statistics
Matches: 125, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
123 125 1.00
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.41
Consensus pattern (123 bp):
CAAACTTAAAAACATATTGAAATCTTGATATACTTACCTTGTTCTATTGATACTAATCTTTAACT
TGATTTTCTCTCTCCTCCAGCTTCTATTTCTTGAATCCAACTTGATATTCTAACTCCC
Found at i:69889209 original size:18 final size:20
Alignment explanation
Indices: 69889182--69889230 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
69889172 TAATTAATAA
* *
69889182 TAAAATAATAAAATATCTCAT
1 TAAAATAAT-ATATATCTAAT
69889203 TAAAATAATATATATCTAAT
1 TAAAATAATATATATCTAAT
69889223 T-AAATAAT
1 TAAAATAAT
69889231 CATAAAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 7 0.27
20 10 0.38
21 9 0.35
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (20 bp):
TAAAATAATATATATCTAAT
Found at i:69889219 original size:20 final size:21
Alignment explanation
Indices: 69889182--69889241 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
69889172 TAATTAATAA
*
69889182 TAAAATAATAAAATATCTCAT
1 TAAAATAATAAAATATCTAAT
*
69889203 TAAAATAAT-ATATATCTAAT
1 TAAAATAATAAAATATCTAAT
*
69889223 TAAATAATCATAAAATATC
1 T-AA-AATAATAAAATATC
69889242 ATCAACATCA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 10 0.31
21 11 0.34
22 5 0.16
23 6 0.19
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (21 bp):
TAAAATAATAAAATATCTAAT
Found at i:69890773 original size:16 final size:15
Alignment explanation
Indices: 69890752--69890781 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
69890742 AAAATACCGA
69890752 CTTTTCGGCATTTTGG
1 CTTTTCGGC-TTTTGG
69890768 CTTTTCGGCTTTTG
1 CTTTTCGGCTTTTG
69890782 CCGATCTAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.03, C:0.20, G:0.23, T:0.53
Consensus pattern (15 bp):
CTTTTCGGCTTTTGG
Found at i:69894101 original size:48 final size:48
Alignment explanation
Indices: 69893971--69894310 Score: 572
Period size: 48 Copynumber: 7.0 Consensus size: 48
69893961 ATATACACAC
* * * *
69893971 ATCTCCTACATATTTCACACTAGCCCTTCGGCTTTACCACATATACGT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
69894019 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
69894069 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
69894117 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
69894165 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
69894213 ATCCCATACATATTTCACATTAACCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
69894261 ATCCCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
69894309 AT
1 AT
69894311 ATTTATCTTG
Statistics
Matches: 277, Mismatches: 13, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
48 234 0.84
50 43 0.16
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:69898174 original size:6 final size:6
Alignment explanation
Indices: 69898139--69898173 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
69898129 AGGTTTCCAA
*
69898139 AAATGG AAATGG AAATGG AAATGG AAATGA AAATG
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATG
69898174 ATCCATTTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.54, C:0.00, G:0.29, T:0.17
Consensus pattern (6 bp):
AAATGG
Found at i:69900769 original size:184 final size:184
Alignment explanation
Indices: 69900460--69900828 Score: 632
Period size: 184 Copynumber: 2.0 Consensus size: 184
69900450 CAGATAACCA
* *
69900460 TCAAGGAGGTTGTTAGCAATCTTTGTCAGCATGTTGGGTGGGCTGAAACCACACTCATTCAGTCA
1 TCAAGGAGGTTGTTAACAATCTTTGTCAGCATGTTGGGTAGGCTGAAACCACACTCATTCAGTCA
* *
69900525 AGGCAAGTATCGATATATTTTAGAGATGGGTGCTTAAATGAGGATGTTAATCTTGTTGATTATAA
66 AGGCAAGTATCGATATAGTTTAGAGATGGATGCTTAAATGAGGATGTTAATCTTGTTGATTATAA
* * *
69900590 GACTAATCGAGGGTCTTGATTGGATATAGGTTGGTGGTCGTGGTTTTCGGCGCG
131 GACTAATCGAGGGTCTTGATTAGATATAGGTTGGTGGTCGTGCTTTTCAGCGCG
*
69900644 TCAAGGAGGTTGTTAACAATCTTTGTCAGCGTGTTGGGTAGGCTGAAACCACACTCATTCAGTCA
1 TCAAGGAGGTTGTTAACAATCTTTGTCAGCATGTTGGGTAGGCTGAAACCACACTCATTCAGTCA
*
69900709 AGGCAAGTATC-AGTATAGTTTAGAGATGGATGCTTAAATGAGGGTGTTAATCTTGTTGATTATA
66 AGGCAAGTATCGA-TATAGTTTAGAGATGGATGCTTAAATGAGGATGTTAATCTTGTTGATTATA
*
69900773 AGACTAATTGAGGGTCTTGATTAGATATAGGTTGGTGGTCGTGCTTTTCAGCGCG
130 AGACTAATCGAGGGTCTTGATTAGATATAGGTTGGTGGTCGTGCTTTTCAGCGCG
69900828 T
1 T
69900829 TCTCGTAAAT
Statistics
Matches: 174, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
183 1 0.01
184 173 0.99
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.33
Consensus pattern (184 bp):
TCAAGGAGGTTGTTAACAATCTTTGTCAGCATGTTGGGTAGGCTGAAACCACACTCATTCAGTCA
AGGCAAGTATCGATATAGTTTAGAGATGGATGCTTAAATGAGGATGTTAATCTTGTTGATTATAA
GACTAATCGAGGGTCTTGATTAGATATAGGTTGGTGGTCGTGCTTTTCAGCGCG
Found at i:69900895 original size:17 final size:17
Alignment explanation
Indices: 69900875--69900913 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
69900865 GTAAAACTAC
*
69900875 AAAAGGCTGAAAAGCTG
1 AAAAGACTGAAAAGCTG
* *
69900892 AAAAAACTGAAAGGCTG
1 AAAAGACTGAAAAGCTG
69900909 AAAAG
1 AAAAG
69900914 CCAGAAAGTG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.10, G:0.26, T:0.10
Consensus pattern (17 bp):
AAAAGACTGAAAAGCTG
Found at i:69915062 original size:20 final size:20
Alignment explanation
Indices: 69915037--69915075 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
69915027 CGTAGAGGTA
69915037 GGCTTGGGACACGCCCGTTT
1 GGCTTGGGACACGCCCGTTT
69915057 GGCTTGGGACACGCCCGTT
1 GGCTTGGGACACGCCCGTT
69915076 CTTCAGCCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.10, C:0.31, G:0.36, T:0.23
Consensus pattern (20 bp):
GGCTTGGGACACGCCCGTTT
Found at i:69916396 original size:42 final size:42
Alignment explanation
Indices: 69916334--69916486 Score: 139
Period size: 42 Copynumber: 3.6 Consensus size: 42
69916324 TAAGATGCCA
* * * *
69916334 ATGCCATGTCCCAGACATGGTCTTATATCAGATCTCGCATCG
1 ATGCCATATCCCAAATATGGTCTTATATCAGATCTCACATCG
**
69916376 ATGCCATATCCCAAATATGGTCTTATA-C-GAATTCTCATTTCG
1 ATGCCATATCCCAAATATGGTCTTATATCAG-A-TCTCACATCG
* * * * *
69916418 ATGCCATGTCCCAAATATGGTCTTACATGAGATCTCATATCA
1 ATGCCATATCCCAAATATGGTCTTATATCAGATCTCACATCG
* ** *
69916460 ATGTCATATCCCAGTTATGGTTTTATA
1 ATGCCATATCCCAAATATGGTCTTATA
69916487 CGGGATCTCA
Statistics
Matches: 90, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
40 1 0.01
41 2 0.02
42 85 0.94
43 1 0.01
44 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (42 bp):
ATGCCATATCCCAAATATGGTCTTATATCAGATCTCACATCG
Found at i:69916497 original size:84 final size:84
Alignment explanation
Indices: 69916334--69916488 Score: 211
Period size: 84 Copynumber: 1.8 Consensus size: 84
69916324 TAAGATGCCA
* * * *
69916334 ATGCCATGTCCCAGACATGGTCTTATATCAGATCTCGCATCGATGCCATATCCCAAATATGGTCT
1 ATGCCATGTCCCAAACATGGTCTTACATCAGATCTCACATCAATGCCATATCCCAAATATGGTCT
69916399 TATACGAATTCTCATTTCG
66 TATACGAATTCTCATTTCG
* * * * ** *
69916418 ATGCCATGTCCCAAATATGGTCTTACATGAGATCTCATATCAATGTCATATCCCAGTTATGGTTT
1 ATGCCATGTCCCAAACATGGTCTTACATCAGATCTCACATCAATGCCATATCCCAAATATGGTCT
69916483 TATACG
66 TATACG
69916489 GGATCTCATC
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
84 60 1.00
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (84 bp):
ATGCCATGTCCCAAACATGGTCTTACATCAGATCTCACATCAATGCCATATCCCAAATATGGTCT
TATACGAATTCTCATTTCG
Found at i:69929477 original size:68 final size:67
Alignment explanation
Indices: 69929405--69929581 Score: 173
Period size: 67 Copynumber: 2.6 Consensus size: 67
69929395 CATCATGTGT
* * * *
69929405 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
69929467 ATGTAG
62 ATGTAG
** * *
69929473 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGCTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
69929538 AG
66 AG
* * * * *
69929540 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATGGGTGG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGG
69929582 TACTGAGTGT
Statistics
Matches: 93, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 20 0.22
65 7 0.08
66 21 0.23
67 32 0.34
68 13 0.14
ACGTcount: A:0.32, C:0.17, G:0.30, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:69929510 original size:64 final size:64
Alignment explanation
Indices: 69929429--69929612 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
69929419 AGACATTATG
* *
69929429 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
69929493 ATGTAGCTAGGTCGCATGCGTGGCTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
69929558 AA
63 AA
* * * *
69929560 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
69929613 CGAACTCTAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 7 0.07
66 18 0.18
67 32 0.33
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:69932489 original size:26 final size:26
Alignment explanation
Indices: 69932439--69932498 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
69932429 ATAATACAGC
*
69932439 TGCATTGATAATATATACGTTTGAAT
1 TGCATTGATAATATATACGTATGAAT
69932465 TGCATTGA-AATTATTATA-GTATGAAT
1 TGCATTGATAA-TA-TATACGTATGAAT
69932491 TGC-TTGAT
1 TGCATTGAT
69932499 TATGGAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
25 6 0.20
26 20 0.67
27 4 0.13
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.43
Consensus pattern (26 bp):
TGCATTGATAATATATACGTATGAAT
Found at i:69934373 original size:25 final size:25
Alignment explanation
Indices: 69934339--69934390 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
69934329 TGCCTCAGAC
*
69934339 TTGGTCTTACATGATGTAGTATTCA
1 TTGGTCTTACATGATATAGTATTCA
*
69934364 TTGGTCTTACATGATATAGTCTTCA
1 TTGGTCTTACATGATATAGTATTCA
69934389 TT
1 TT
69934391 TTCCACGGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.23, C:0.13, G:0.17, T:0.46
Consensus pattern (25 bp):
TTGGTCTTACATGATATAGTATTCA
Found at i:69936227 original size:27 final size:26
Alignment explanation
Indices: 69936197--69936274 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 26
69936187 GGGCGTATTC
*
69936197 GTCATTTTACCATATAAGGGTATTACG
1 GTCATTTTACC-TATAGGGGTATTACG
* *
69936224 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTA-CCTATAGGGG-TATTACG
*
69936251 GTCTTTTTACCTATTAGGGGTATT
1 GTCATTTTACCTA-TAGGGGTATT
69936275 TTAGTCATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
26 5 0.12
27 33 0.80
28 3 0.07
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.38
Consensus pattern (26 bp):
GTCATTTTACCTATAGGGGTATTACG
Found at i:69936345 original size:27 final size:27
Alignment explanation
Indices: 69936315--69936422 Score: 103
Period size: 27 Copynumber: 3.9 Consensus size: 27
69936305 GTAAATCTAC
69936315 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
69936342 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
69936368 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
69936398 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
69936423 ACAAATTGAG
Statistics
Matches: 68, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
26 1 0.01
27 41 0.60
28 7 0.10
29 18 0.26
30 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:69936495 original size:81 final size:80
Alignment explanation
Indices: 69936294--69936582 Score: 303
Period size: 81 Copynumber: 3.5 Consensus size: 80
69936284 TCATCCTACA
* * * * ** ** * * *
69936294 AGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT
1 AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAA-CTAGGGTATTTCG
* *
69936359 ATAATTTTTAGAAAGTC
65 ATAA-TTTTACAAACTC
** * *
69936376 AAGGGTATTTCT-GTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTT
1 -AGGGTATTT-TGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACT-AGGGTATTT
*
69936440 CGATAATTTCACAAA-TC
63 CGATAATTTTACAAACTC
*
69936457 AGGAGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT
1 AGG-GTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTA-GGGTATTTC
* *
69936522 GGTAATTTTACAAACTA
64 GATAATTTTACAAACTC
*
69936539 AGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATT
1 AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATT
69936583 CTATCCTACA
Statistics
Matches: 174, Mismatches: 26, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
80 5 0.03
81 106 0.61
82 11 0.06
83 51 0.29
84 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (80 bp):
AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGTATTTCGA
TAATTTTACAAACTC
Found at i:69936596 original size:81 final size:79
Alignment explanation
Indices: 69936376--69936615 Score: 286
Period size: 81 Copynumber: 3.0 Consensus size: 79
69936366 TTAGAAAGTC
** **
69936376 AAGGGTATTTCT-GTAATTTTGTAAA-TCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATT
1 AAGGGTATTT-TGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACAG-GGGTATT
*
69936439 TCGATAATTTCACAAAT
63 TCGGTAATTTCACAAAT
* *
69936456 CAGGAGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTT
1 AAGG-GTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC-AGGGGTATTT
* *
69936521 TGGTAATTTTACAAACT
64 CGGTAATTTCACAAA-T
* **
69936538 AAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTATCCTACAGGGGTATTTC
1 AAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTA-CAAACAGGGGTATTTC
*
69936603 AGTAATTTCACAA
65 GGTAATTTCACAA
69936616 TCGAGGGTAA
Statistics
Matches: 137, Mismatches: 17, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
80 4 0.03
81 125 0.91
82 8 0.06
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (79 bp):
AAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACAGGGGTATTTCG
GTAATTTCACAAAT
Found at i:69936598 original size:54 final size:53
Alignment explanation
Indices: 69936403--69936615 Score: 257
Period size: 54 Copynumber: 3.9 Consensus size: 53
69936393 TTTGTAAATC
** *
69936403 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAA-T
1 AGGGGTATTTTGGTAATTTTACAAACAG-GGGTATTTCGGTAATTTCACAAACT
* * *
69936456 CAGGAGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACT
1 -AGGGGTATTTTGGTAATTTTACAAA-CAGGGGTATTTCGGTAATTTCACAAACT
* * *
69936511 AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAAC-AGGGGTATTTCGGTAATTTCACAAACT
* ** *
69936565 AGGGGTATTTTGGTAATTCTATCCTACAGGGGTATTTCAGTAATTTCACAA
1 AGGGGTATTTTGGTAATTTTA-CAAACAGGGGTATTTCGGTAATTTCACAA
69936616 TCGAGGGTAA
Statistics
Matches: 140, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
53 1 0.01
54 134 0.96
55 5 0.04
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (53 bp):
AGGGGTATTTTGGTAATTTTACAAACAGGGGTATTTCGGTAATTTCACAAACT
Found at i:69936601 original size:27 final size:27
Alignment explanation
Indices: 69936378--69936582 Score: 265
Period size: 27 Copynumber: 7.6 Consensus size: 27
69936368 AGAAAGTCAA
**
69936378 GGGTATTTCT-GTAATTTTGTAAA-TCAG
1 GGGTATTT-TGGTAATTTTACAAACT-AG
*
69936405 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
69936431 AGGGTATTTCGATAATTTCACAAA-TCAG
1 -GGGTATTTTGGTAATTTTACAAACT-AG
* *
69936459 GAGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
69936486 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
69936513 GGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACTAG
69936540 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
69936567 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
69936583 CTATCCTACA
Statistics
Matches: 158, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
26 2 0.01
27 155 0.98
28 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:69936622 original size:27 final size:26
Alignment explanation
Indices: 69936378--69936622 Score: 210
Period size: 27 Copynumber: 9.1 Consensus size: 26
69936368 AGAAAGTCAA
69936378 GGGTATTTCT-GTAATTTTGTA-AATCAG
1 GGGTATTT-TGGTAA-TTT-TACAATCAG
*
69936405 GGGTATTTTGGTAATTTTACAAAT-TG
1 GGGTATTTTGGTAATTTTAC-AATCAG
* * *
69936431 AGGGTATTTCGATAATTTCACAAATCAG
1 -GGGTATTTTGGTAATTTTAC-AATCAG
* *
69936459 GAGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTAC-AATCAG
*
69936486 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAATC-AG
* *
69936513 GGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAATC-AG
*
69936540 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAATC-AG
* *
69936567 GGGTATTTTGGTAATTCTATC-CTACAG
1 GGGTATTTTGGTAATTTTA-CAAT-CAG
** *
69936594 GGGTATTTCAGTAATTTCACAATCGAG
1 GGGTATTTTGGTAATTTTACAATC-AG
69936621 GG
1 GG
69936623 TAAAATGGTA
Statistics
Matches: 186, Mismatches: 22, Indels: 20
0.82 0.10 0.09
Matches are distributed among these distances:
25 2 0.01
26 10 0.05
27 171 0.92
28 3 0.02
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAATCAG
Found at i:69936731 original size:81 final size:81
Alignment explanation
Indices: 69936614--69936811 Score: 308
Period size: 81 Copynumber: 2.4 Consensus size: 81
69936604 GTAATTTCAC
* * *
69936614 AATCGAGGGTAAAATGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTTTGTAAATCGAGGGT
*
69936678 AAAACGGTAATTCTGTA
65 AAAACGGTAATTCTATA
* *
69936695 AATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
69936760 AAACGGTAATTCTATA
66 AAACGGTAATTCTATA
* *
69936776 AATCGAGGGTAAAATGGTAATTCTACAAATTGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
69936812 CATTTCAGTA
Statistics
Matches: 107, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
81 106 0.99
82 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
AAACGGTAATTCTATA
Found at i:69936811 original size:27 final size:27
Alignment explanation
Indices: 69936614--69936799 Score: 266
Period size: 27 Copynumber: 6.9 Consensus size: 27
69936604 GTAATTTCAC
*
69936614 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
69936641 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTGTA
*
69936668 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
69936695 AATCAAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
69936722 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * *
69936749 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
69936776 AATCGAGGGTAAAATGGTAATTCT
1 AATCGAGGGTAAAATGGTAATTCT
69936800 ACAAATTGAG
Statistics
Matches: 143, Mismatches: 14, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
26 1 0.01
27 141 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:69939083 original size:25 final size:25
Alignment explanation
Indices: 69939055--69939124 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
69939045 CTCTTTTAAT
69939055 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
69939080 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
69939105 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
69939125 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:69939955 original size:27 final size:26
Alignment explanation
Indices: 69939925--69940002 Score: 68
Period size: 27 Copynumber: 2.9 Consensus size: 26
69939915 GGGCATATTC
69939925 GTCATTTTACCATATAAGGGTATTACG
1 GTCATTTTACC-TATAAGGGTATTACG
* * *
69939952 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTA-CCTATAAGGG-TATTACG
* *
69939979 GTCTTTTTACCTATTAGAGGTATT
1 GTCATTTTACCTATAAG-GGTATT
69940003 TTAGTCATTT
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
26 6 0.15
27 30 0.77
28 3 0.08
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (26 bp):
GTCATTTTACCTATAAGGGTATTACG
Found at i:69940156 original size:27 final size:26
Alignment explanation
Indices: 69940019--69940298 Score: 202
Period size: 27 Copynumber: 10.3 Consensus size: 26
69940009 ATTTCATCCT
* * *
69940019 ACAAGGGTGTTTTGGTAAATCTACAA
1 ACAAGGGTATTTTGGTAATTTTACAA
** **
69940045 ACCAAGGGTATTTCAGTAATTTTGTAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* * *
69940072 ACCAATGGTATTTCT-ATAATTTTTAGAA
1 A-CAAGGGTATTT-TGGTAA-TTTTACAA
* **
69940100 AGTCAAGGGTATTTTTGTAATTTTGTAA
1 A--CAAGGGTATTTTGGTAATTTTACAA
69940128 ATCAAGGGTATTTTGGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
** * *
69940155 ATTGAGGGTATTTCGGTAATTTCACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
*
69940182 ACCAGTGGTATTTTGGTAATTTTACAA
1 ACAAG-GGTATTTTGGTAATTTTACAA
*
69940209 ACTAGGGGTATTTTGGTAATTTTACAA
1 AC-AAGGGTATTTTGGTAATTTTACAA
* * **
69940236 ACTAGGGGTATTTTGGTAATTCTATCCT
1 AC-AAGGGTATTTTGGTAATTTTA-CAA
* *
69940264 ACAAGGGTATTTTAGTAATTTCACAA
1 ACAAGGGTATTTTGGTAATTTTACAA
* *
69940290 TCGAGGGTA
1 ACAAGGGTA
69940299 AAACAGTAAT
Statistics
Matches: 205, Mismatches: 41, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
26 11 0.05
27 162 0.79
28 19 0.09
29 13 0.06
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (26 bp):
ACAAGGGTATTTTGGTAATTTTACAA
Found at i:69940191 original size:110 final size:107
Alignment explanation
Indices: 69940019--69940289 Score: 276
Period size: 108 Copynumber: 2.5 Consensus size: 107
69940009 ATTTCATCCT
* * ***
69940019 ACAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATT
1 ACAAGGGTATTTTGGTAATTCTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAATGGTATT
* * * **
69940084 TCT-ATAATTTTTAGAAAGTCAAGGGTATTTTTGTAATTTTGTAA
66 T-TGATAA-TTTTACAAACT-AAGGGTATTTTGGTAATTTTACAA
* *** * *
69940128 ATCAAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTAT
1 A-CAAGGGTATTTTGGTAATTCTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAATGGTAT
* *
69940193 TTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAA
65 TTTGATAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAA
* ** *
69940236 ACTAGGGGTATTTTGGTAATTCTATCCTA-CAAGGGTATTTTAGTAATTTCACAA
1 AC-AAGGGTATTTTGGTAATTCTA-CAAACCAAGGGTATTTCAGTAATTTCACAA
69940290 TCGAGGGTAA
Statistics
Matches: 132, Mismatches: 26, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
107 1 0.01
108 61 0.46
109 13 0.10
110 57 0.43
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.39
Consensus pattern (107 bp):
ACAAGGGTATTTTGGTAATTCTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAATGGTATT
TTGATAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAA
Found at i:69940336 original size:27 final size:27
Alignment explanation
Indices: 69940288--69940417 Score: 147
Period size: 27 Copynumber: 4.8 Consensus size: 27
69940278 GTAATTTCAC
* **
69940288 AATCGAGGGTAAAACAGTAATTTTGTA
1 AATCGAAGGTAAAATGGTAATTTTGTA
*
69940315 AA-CTGAAGGTTAAATGGTAATTTTGTA
1 AATC-GAAGGTAAAATGGTAATTTTGTA
* *
69940342 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAAGGTAAAATGGTAATTTTGTA
* *
69940369 AATC-AAGGGTGAAATGGTAATTTTATA
1 AATCGAA-GGTAAAATGGTAATTTTGTA
*
69940396 AATCGAGGGTAAAATGGTAATT
1 AATCGAAGGTAAAATGGTAATT
69940418 CTACTAATTG
Statistics
Matches: 86, Mismatches: 13, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
26 2 0.02
27 82 0.95
28 2 0.02
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (27 bp):
AATCGAAGGTAAAATGGTAATTTTGTA
Found at i:69940415 original size:54 final size:54
Alignment explanation
Indices: 69940288--69940417 Score: 199
Period size: 54 Copynumber: 2.4 Consensus size: 54
69940278 GTAATTTCAC
* * * *
69940288 AATCGAGGGTAAAACAGTAATTTTGTAAACTGAAGGTTAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAACTCAAGGTGAAATGGTAATTTTATA
69940342 AATCGAGGGTAAAACGGTAATTTTGTAAA-TCAAGGGTGAAATGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTTTGTAAACTCAA-GGTGAAATGGTAATTTTATA
*
69940396 AATCGAGGGTAAAATGGTAATT
1 AATCGAGGGTAAAACGGTAATT
69940418 CTACTAATTG
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
53 3 0.04
54 67 0.96
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (54 bp):
AATCGAGGGTAAAACGGTAATTTTGTAAACTCAAGGTGAAATGGTAATTTTATA
Found at i:69949674 original size:18 final size:18
Alignment explanation
Indices: 69949653--69949691 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
69949643 CTATTTTTTT
69949653 TAATGAAAATAGACTCAC
1 TAATGAAAATAGACTCAC
*
69949671 TAATGAAAATAGGCTCAC
1 TAATGAAAATAGACTCAC
69949689 TAA
1 TAA
69949692 GGAATCTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.49, C:0.15, G:0.13, T:0.23
Consensus pattern (18 bp):
TAATGAAAATAGACTCAC
Found at i:69953990 original size:40 final size:41
Alignment explanation
Indices: 69953921--69954015 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 41
69953911 ACTAAGTTTG
* * *
69953921 GCACTTAGTGTGCG-TTTTGAGATAGCTTCGGCTATATATA
1 GCACTTAGTGTGCGAATTAGAGATAACTTCGGCTATATATA
* *
69953961 GCACTTAGTGTGCGAATTAGA-ATAACTTCGGCTATATGTG
1 GCACTTAGTGTGCGAATTAGAGATAACTTCGGCTATATATA
*
69954001 GCACTAAGTGTGCGA
1 GCACTTAGTGTGCGA
69954016 TACTGAGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
40 44 0.92
41 4 0.08
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (41 bp):
GCACTTAGTGTGCGAATTAGAGATAACTTCGGCTATATATA
Found at i:69954558 original size:15 final size:16
Alignment explanation
Indices: 69954531--69954562 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
69954521 TAGTGTTACA
69954531 GTTGAATAAAGATAAT
1 GTTGAATAAAGATAAT
69954547 GTTGAA-AAAGATAAT
1 GTTGAATAAAGATAAT
69954562 G
1 G
69954563 CTCAGAACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.50, C:0.00, G:0.22, T:0.28
Consensus pattern (16 bp):
GTTGAATAAAGATAAT
Found at i:69959353 original size:40 final size:40
Alignment explanation
Indices: 69959266--69959426 Score: 119
Period size: 44 Copynumber: 3.9 Consensus size: 40
69959256 TGTGTGTTTC
* * * *
69959266 GAGATAGCTTCGGCTATATATAGCACTTAGTGTGCGA-AT
1 GAGATAACTTCGGCTATATGTGGCACTAAGTGTGCGATAT
*
69959305 TAGAATAACTTCGGCTATATGTGGCA-TAAGTGTGCGATACT
1 GAG-ATAACTTCGGCTATATGTGGCACTAAGTGTGCGATA-T
* * *
69959346 GAGATAACTTAGGTTTAATGTGATGGCACTAAGTGTGCGATAT
1 GAGATAACTTCGG-CT-ATATG-TGGCACTAAGTGTGCGATAT
** * *
69959389 CGTTATAGCTTCGGCTAATCATTTTGGCACTAAGTGTG
1 -GAGATAACTTCGGCT-AT-A-TGTGGCACTAAGTGTG
69959427 TAAGTTCCTC
Statistics
Matches: 96, Mismatches: 16, Indels: 15
0.76 0.13 0.12
Matches are distributed among these distances:
39 12 0.12
40 29 0.30
41 4 0.04
42 4 0.04
43 10 0.10
44 36 0.38
45 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.33
Consensus pattern (40 bp):
GAGATAACTTCGGCTATATGTGGCACTAAGTGTGCGATAT
Found at i:69961674 original size:56 final size:56
Alignment explanation
Indices: 69961588--69961819 Score: 446
Period size: 56 Copynumber: 4.1 Consensus size: 56
69961578 ACAAGGGATG
69961588 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
69961644 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
69961700 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
* *
69961756 ATGGGCAAAACATGTCATCAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
69961812 ATGGGCAA
1 ATGGGCAA
69961820 TAAACTAATA
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 174 1.00
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:69962558 original size:40 final size:40
Alignment explanation
Indices: 69962292--69962544 Score: 445
Period size: 40 Copynumber: 6.3 Consensus size: 40
69962282 GGACTAAGAT
*
69962292 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGATGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
69962332 CCGATGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGATGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
69962372 CCGATGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGATGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
69962412 CCGATGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGATGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
69962452 CCGATGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGATGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
69962492 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTC
1 CCGATGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTC
*
69962532 CCGAAGGCATTTG
1 CCGATGGCATTTG
69962545 AACGAGTAGC
Statistics
Matches: 208, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
40 206 0.99
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.29
Consensus pattern (40 bp):
CCGATGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:69962563 original size:120 final size:120
Alignment explanation
Indices: 69962241--69962544 Score: 461
Period size: 120 Copynumber: 2.5 Consensus size: 120
69962231 GAATGATGTT
* * * * * * *
69962241 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATTCGGACTAAGAT-CCGAAGGCATTT
1 CGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCATTT
69962304 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGATGGCATTTGTGCGAGTTACTAAATC
64 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGATGGCATTTGTGCGAGTTACTAAATC
* * *
69962361 CGGGTTAAGTCCCGATGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGATGGCATTTGT
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGT
69962426 GCGAGTTACTAAATCCGGGTTAAGTCCCGATGGCATTTGTGCGAGTTACTAAATC
66 GCGAGTTACTAAATCCGGGTTAAGTCCCGATGGCATTTGTGCGAGTTACTAAATC
*
69962481 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTG
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTG
69962545 AACGAGTAGC
Statistics
Matches: 167, Mismatches: 14, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
119 1 0.01
120 157 0.94
121 9 0.05
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (120 bp):
CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGTTACTAAATCCGGGTTAAGTCCCGATGGCATTTGTGCGAGTTACTAAATC
Found at i:69979939 original size:48 final size:48
Alignment explanation
Indices: 69979883--69979978 Score: 165
Period size: 48 Copynumber: 2.0 Consensus size: 48
69979873 AGCAGCATGT
* *
69979883 GATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
1 GATATGTGATCCAATGTAAGACCATATCTGGGACATGGCATTGGCATC
*
69979931 GATATGTGATCCAATGTAAGACCATATCTGGGATATGGCATTGGCATC
1 GATATGTGATCCAATGTAAGACCATATCTGGGACATGGCATTGGCATC
69979979 CTACCATGTA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (48 bp):
GATATGTGATCCAATGTAAGACCATATCTGGGACATGGCATTGGCATC
Found at i:69980953 original size:11 final size:11
Alignment explanation
Indices: 69980932--69980973 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
69980922 ATAAGAATGT
69980932 TTGATGATTAAG
1 TTGA-GATTAAG
69980944 TTGAGATTAA-
1 TTGAGATTAAG
*
69980954 TTG-GTTTAAG
1 TTGAGATTAAG
69980964 TTGAGATTAA
1 TTGAGATTAA
69980974 TTGGTAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
9 5 0.19
10 6 0.23
11 11 0.42
12 4 0.15
ACGTcount: A:0.33, C:0.00, G:0.24, T:0.43
Consensus pattern (11 bp):
TTGAGATTAAG
Found at i:69980964 original size:20 final size:20
Alignment explanation
Indices: 69980939--69980978 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
69980929 TGTTTGATGA
69980939 TTAAGTTGAGATTAATTGGT
1 TTAAGTTGAGATTAATTGGT
69980959 TTAAGTTGAGATTAATTGGT
1 TTAAGTTGAGATTAATTGGT
69980979 AAGTTGATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.25, T:0.45
Consensus pattern (20 bp):
TTAAGTTGAGATTAATTGGT
Found at i:69980983 original size:18 final size:19
Alignment explanation
Indices: 69980939--69980985 Score: 78
Period size: 20 Copynumber: 2.5 Consensus size: 19
69980929 TGTTTGATGA
69980939 TTAAGTTGAGATTAATTGG
1 TTAAGTTGAGATTAATTGG
69980958 TTTAAGTTGAGATTAATTGG
1 -TTAAGTTGAGATTAATTGG
69980978 -TAAGTTGA
1 TTAAGTTGA
69980986 TAATCATAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 8 0.30
20 19 0.70
ACGTcount: A:0.32, C:0.00, G:0.26, T:0.43
Consensus pattern (19 bp):
TTAAGTTGAGATTAATTGG
Found at i:69981909 original size:12 final size:12
Alignment explanation
Indices: 69981892--69981916 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
69981882 ATGTAAGTGA
69981892 TCTTGATGATTT
1 TCTTGATGATTT
69981904 TCTTGATGATTT
1 TCTTGATGATTT
69981916 T
1 T
69981917 TACATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:69982719 original size:47 final size:47
Alignment explanation
Indices: 69982653--69982783 Score: 153
Period size: 47 Copynumber: 2.8 Consensus size: 47
69982643 ATTCTGGAAA
* *
69982653 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGAGACGAGT-G
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GAAAAGA-TAG
*
69982701 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACTACGAAAAGATAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGAAAAGATAG
* *
69982747 -TCAGAGTAAGACCATGTCTGGGACATGCCATCGGCAC
1 CT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
69982784 CTTACCCATA
Statistics
Matches: 72, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
45 2 0.03
46 21 0.29
47 32 0.44
48 17 0.24
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (47 bp):
CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAAAAGATAG
Found at i:69990333 original size:19 final size:20
Alignment explanation
Indices: 69990309--69990346 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
69990299 GGTACCACCA
69990309 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
69990328 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
69990347 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:69990682 original size:93 final size:93
Alignment explanation
Indices: 69990575--69990745 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
69990565 GCCCCTAAGT
* *
69990575 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69990640 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
69990668 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69990733 CGAGTTCGGATGC
66 CGAGTTCGGATGC
69990746 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69990742 original size:46 final size:46
Alignment explanation
Indices: 69990570--69990742 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
69990560 AACCCGCCCC
* * *
69990570 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
69990616 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
69990664 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
69990709 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69990743 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:69991199 original size:30 final size:30
Alignment explanation
Indices: 69991165--69991224 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
69991155 ATTTAATACG
69991165 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
69991195 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
69991225 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:69998270 original size:93 final size:93
Alignment explanation
Indices: 69998163--69998333 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
69998153 GCCCCTAAGT
* *
69998163 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69998228 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
69998256 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69998321 CGAGTTCGGATGC
66 CGAGTTCGGATGC
69998334 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69998330 original size:46 final size:46
Alignment explanation
Indices: 69998158--69998330 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
69998148 AACCCGCCCC
* * *
69998158 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
69998204 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
69998252 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
69998297 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69998331 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:69999928 original size:46 final size:45
Alignment explanation
Indices: 69999784--70000001 Score: 192
Period size: 46 Copynumber: 4.7 Consensus size: 45
69999774 TTGTGTGTGC
* * * * * *
69999784 TAGTGTAAGACAAGTCTGGGACATGCATCGACC-ACATTATGGAAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGA-GAT-AAAGT
*
69999830 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACT-GAGA-CAAGT
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTAGAGATAAAGT
*
69999876 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGAGATGTAAGT
1 --TAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGAGAT-AAAGT
* *
69999924 TAGTGTAAGACATGTCTCGGACATGCATCGG-CTACGAAATAATAGT
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTA-GAGATAA-AGT
* *
69999970 CAGTGCAAGACCATGTCTGGGACATGGCATCG
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCG
70000002 ACTTGAGATA
Statistics
Matches: 146, Mismatches: 13, Indels: 24
0.80 0.07 0.13
Matches are distributed among these distances:
45 6 0.04
46 70 0.48
47 40 0.27
48 28 0.19
49 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (45 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGAGATAAAGT
Found at i:70000010 original size:93 final size:94
Alignment explanation
Indices: 69999780--70000052 Score: 254
Period size: 94 Copynumber: 2.9 Consensus size: 94
69999770 TCACTTGTGT
* * * * * * *
69999780 GTGCTAGTGTAAGACAAGTCTGGGACATGCATC-GACCACATTATGGAAGCTAGTGTAAGACCAT
1 GTGCTAGTGCAAGACATGTCTGGGACATGCATCGGACTAGA-GATGTAAGTTAGTGTAAGACCAT
* * *
69999844 GTCTGGGACATGGCATCGGCACTGAGACAA
65 GTCTCGGACATGGCATCGGCACTGAAAAAA
* *
69999874 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGAGATGTAAGTTAGTGTAAGA-CATG
1 GTGCTAGTGCAAGACATGTCTGGGACATGCATCGGACTAGAGATGTAAGTTAGTGTAAGACCATG
69999938 TCTCGGACAT-GCATCGGCTAC-GAAATAATA
66 TCTCGGACATGGCATCGGC-ACTGAAA-AA-A
* * * ** *
69999968 GT-C-AGTGCAAGACCATGTCTGGGACATGGCATC-GACTTGAGATATGAGCCAATGTAAGACCA
1 GTGCTAGTGCAAGA-CATGTCTGGGACAT-GCATCGGACTAGAGATGTAAGTTAGTGTAAGACCA
* * *
70000030 TGTTTGGGACATGGCATTGGCAC
64 TGTCTCGGACATGGCATCGGCAC
70000053 CTTACCCATA
Statistics
Matches: 150, Mismatches: 21, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
92 19 0.13
93 50 0.33
94 70 0.47
95 11 0.07
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (94 bp):
GTGCTAGTGCAAGACATGTCTGGGACATGCATCGGACTAGAGATGTAAGTTAGTGTAAGACCATG
TCTCGGACATGGCATCGGCACTGAAAAAA
Found at i:70001093 original size:71 final size:71
Alignment explanation
Indices: 70001008--70001160 Score: 225
Period size: 71 Copynumber: 2.2 Consensus size: 71
70000998 GACATGGGCC
* * * * *
70001008 AAGACACGAGCGTGTCGAGGCCATGTAAGAAGACACGGGCCAGGTACACGGGCGTGTCGAGGCCG
1 AAGACACGGGCGTGTCAAGGCCATGTAAGAAGACACGGGCCAGGCACACGGGCATGTCGAAGCCG
70001073 TATGGG
66 TATGGG
* **
70001079 AAGACACGGGCGTGTCAAGGCCGTGTGGGAAGACACGGGCCAGGCACACGGGCATGTCGAAGCCG
1 AAGACACGGGCGTGTCAAGGCCATGTAAGAAGACACGGGCCAGGCACACGGGCATGTCGAAGCCG
*
70001144 TGTGGG
66 TATGGG
70001150 AAGACACGGGC
1 AAGACACGGGC
70001161 CAGGCACACG
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
71 73 1.00
ACGTcount: A:0.25, C:0.24, G:0.41, T:0.11
Consensus pattern (71 bp):
AAGACACGGGCGTGTCAAGGCCATGTAAGAAGACACGGGCCAGGCACACGGGCATGTCGAAGCCG
TATGGG
Found at i:70001099 original size:29 final size:29
Alignment explanation
Indices: 70001053--70001118 Score: 114
Period size: 29 Copynumber: 2.3 Consensus size: 29
70001043 CGGGCCAGGT
*
70001053 ACACGGGCGTGTCGAGGCCGTATGGGAAG
1 ACACGGGCGTGTCAAGGCCGTATGGGAAG
*
70001082 ACACGGGCGTGTCAAGGCCGTGTGGGAAG
1 ACACGGGCGTGTCAAGGCCGTATGGGAAG
70001111 ACACGGGC
1 ACACGGGC
70001119 CAGGCACACG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.21, C:0.23, G:0.44, T:0.12
Consensus pattern (29 bp):
ACACGGGCGTGTCAAGGCCGTATGGGAAG
Found at i:70001128 original size:42 final size:41
Alignment explanation
Indices: 70001082--70001190 Score: 173
Period size: 42 Copynumber: 2.6 Consensus size: 41
70001072 GTATGGGAAG
70001082 ACACGGGCGTGTCAAGGCCGTGTGGGAAGACACGGGCCAGGC
1 ACACGGGCGTGTCAA-GCCGTGTGGGAAGACACGGGCCAGGC
*
70001124 ACACGGGCATGTCGAAGCCGTGTGGGAAGACACGGGCCAGGC
1 ACACGGGCGTGTC-AAGCCGTGTGGGAAGACACGGGCCAGGC
70001166 ACACGGGCGTGTGCCAAGCCGTGTG
1 ACACGGGCGTGT--CAAGCCGTGTG
70001191 AAAACCACTG
Statistics
Matches: 62, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
42 49 0.79
43 12 0.19
44 1 0.02
ACGTcount: A:0.21, C:0.27, G:0.41, T:0.11
Consensus pattern (41 bp):
ACACGGGCGTGTCAAGCCGTGTGGGAAGACACGGGCCAGGC
Found at i:70004532 original size:17 final size:17
Alignment explanation
Indices: 70004509--70004553 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
70004499 ATTAAAATAA
70004509 TAATATATTATATAT-T
1 TAATATATTATATATGT
*
70004525 TAAATATATTCTATATGT
1 T-AATATATTATATATGT
70004543 TAATATATTAT
1 TAATATATTAT
70004554 TAAATAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 1 0.04
17 22 0.88
18 2 0.08
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (17 bp):
TAATATATTATATATGT
Found at i:70005274 original size:17 final size:18
Alignment explanation
Indices: 70005254--70005293 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
70005244 TACTTTACTA
70005254 TATATATTT-TAAATTTT
1 TATATATTTCTAAATTTT
70005271 TATA-ATTTCTAAATTTT
1 TATATATTTCTAAATTTT
*
70005288 TTTATA
1 TATATA
70005294 ATGTTTTAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 4 0.20
17 15 0.75
18 1 0.05
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (18 bp):
TATATATTTCTAAATTTT
Found at i:70005596 original size:29 final size:30
Alignment explanation
Indices: 70005531--70005602 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 30
70005521 ACAATTTATG
* * *
70005531 ATTGATTAATTAATTTTGTATTAAGAAATTA
1 ATTGATT-ATAAATTTTGTACTAACAAATTA
* *
70005562 AGTGATTATAAATTTTG-ACTAACAACTTA
1 ATTGATTATAAATTTTGTACTAACAAATTA
*
70005591 ATTGATTTTAAA
1 ATTGATTATAAA
70005603 ATTATTTTAC
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
29 19 0.56
30 9 0.26
31 6 0.18
ACGTcount: A:0.42, C:0.04, G:0.10, T:0.44
Consensus pattern (30 bp):
ATTGATTATAAATTTTGTACTAACAAATTA
Found at i:70008510 original size:20 final size:20
Alignment explanation
Indices: 70008487--70008545 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 20
70008477 TTAATTTATT
70008487 ATTTTTGAATTAAATTAAAC
1 ATTTTTGAATTAAATTAAAC
* **
70008507 A-TTTTG--TT-AATTTATT
1 ATTTTTGAATTAAATTAAAC
70008523 ATTTTTGAATTAAATTAAAC
1 ATTTTTGAATTAAATTAAAC
70008543 ATT
1 ATT
70008546 ATGGTATTAC
Statistics
Matches: 29, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
16 6 0.21
17 7 0.24
19 7 0.24
20 9 0.31
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (20 bp):
ATTTTTGAATTAAATTAAAC
Found at i:70008511 original size:36 final size:36
Alignment explanation
Indices: 70008471--70008545 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
70008461 GTTTCTAATA
70008471 ATTTTGTTAATTTATTATTTTTGAATTAAATTAAAC
1 ATTTTGTTAATTTATTATTTTTGAATTAAATTAAAC
70008507 ATTTTGTTAATTTATTATTTTTGAATTAAATTAAAC
1 ATTTTGTTAATTTATTATTTTTGAATTAAATTAAAC
70008543 ATT
1 ATT
70008546 ATGGTATTAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.56
Consensus pattern (36 bp):
ATTTTGTTAATTTATTATTTTTGAATTAAATTAAAC
Found at i:70008528 original size:17 final size:17
Alignment explanation
Indices: 70008472--70008529 Score: 55
Period size: 17 Copynumber: 3.3 Consensus size: 17
70008462 TTTCTAATAA
70008472 TTTTGTTAATTTATTAT
1 TTTTGTTAATTTATTAT
* * *
70008489 TTTTGAATTAAATTA-AACA
1 TTTTG--TTAATTTATTA-T
70008508 TTTTGTTAATTTATTAT
1 TTTTGTTAATTTATTAT
70008525 TTTTG
1 TTTTG
70008530 AATTAAATTA
Statistics
Matches: 31, Mismatches: 6, Indels: 8
0.69 0.13 0.18
Matches are distributed among these distances:
17 17 0.55
18 2 0.06
19 12 0.39
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.62
Consensus pattern (17 bp):
TTTTGTTAATTTATTAT
Found at i:70008554 original size:31 final size:32
Alignment explanation
Indices: 70008483--70008554 Score: 83
Period size: 36 Copynumber: 2.2 Consensus size: 32
70008473 TTTGTTAATT
* *
70008483 TATTATTTTTGAATTAAATTAAACATTTTGTTAATT
1 TATTATTTTTGAATTAAATTAAACATTATG----TG
70008519 TATTATTTTTGAATTAAATTAAACATTATG-G
1 TATTATTTTTGAATTAAATTAAACATTATGTG
70008550 TATTA
1 TATTA
70008555 CATAATATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
31 5 0.15
36 29 0.85
ACGTcount: A:0.38, C:0.03, G:0.07, T:0.53
Consensus pattern (32 bp):
TATTATTTTTGAATTAAATTAAACATTATGTG
Found at i:70009807 original size:11 final size:11
Alignment explanation
Indices: 70009793--70009818 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
70009783 CCAATATAAG
70009793 AAAATAAAAAT
1 AAAATAAAAAT
70009804 AAAATAAAAAT
1 AAAATAAAAAT
70009815 AAAA
1 AAAA
70009819 ACAAGCTGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:70012121 original size:25 final size:25
Alignment explanation
Indices: 70012093--70012142 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
70012083 AACAAAGGAA
* *
70012093 AGTATTTTCACATAACATAGTGTAT
1 AGTATTTGCACATAACATAGCGTAT
*
70012118 AGTATTTGCACATGACATAGCGTAT
1 AGTATTTGCACATAACATAGCGTAT
70012143 CAATCTTGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (25 bp):
AGTATTTGCACATAACATAGCGTAT
Found at i:70014307 original size:45 final size:47
Alignment explanation
Indices: 70014243--70014344 Score: 122
Period size: 45 Copynumber: 2.2 Consensus size: 47
70014233 ATGCTATCCA
*
70014243 GAGCTCCCT-ATTAATAACTCTT-TGGAGTTACCTGTTAAGCTC-AAT
1 GAGCTTCCTGATTAATAACTCTTAT-GAGTTACCTGTTAAGCTCGAAT
* * *
70014288 GAGCTTCCTGATTAA-AACTCTTATGAGTTTCCTGTTTAGCTCGGAT
1 GAGCTTCCTGATTAATAACTCTTATGAGTTACCTGTTAAGCTCGAAT
*
70014334 AAGCTTCCTGA
1 GAGCTTCCTGA
70014345 CACATGGCTC
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
45 31 0.63
46 18 0.37
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.36
Consensus pattern (47 bp):
GAGCTTCCTGATTAATAACTCTTATGAGTTACCTGTTAAGCTCGAAT
Found at i:70016715 original size:43 final size:43
Alignment explanation
Indices: 70016681--70016791 Score: 177
Period size: 43 Copynumber: 2.6 Consensus size: 43
70016671 CGGCATTACA
* *
70016681 CCTGCTAGGCACAAAGGCCCGAATACACATCACCGGCGCGAAG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAG
* * *
70016724 CCTGCTAGGCCCGAAGGGCCGAATGCACATCACCGGCACGAAG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAG
70016767 CCTGCTAGGCACGAAGGCCCGAATA
1 CCTGCTAGGCACGAAGGCCCGAATA
70016792 TAATACCAGC
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.28, C:0.34, G:0.28, T:0.10
Consensus pattern (43 bp):
CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAG
Found at i:70016831 original size:38 final size:38
Alignment explanation
Indices: 70016784--70016929 Score: 211
Period size: 38 Copynumber: 3.8 Consensus size: 38
70016774 GGCACGAAGG
* *
70016784 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAT
* *
70016822 CCCTAATATAATACCAGCATGAAGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAT
* *
70016860 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAT
* **
70016898 CCCGGATATTTTACCAGCACGAAGCCTGCGGG
1 CCCGAATATAATACCAGCACGAAGCCTGCGGG
70016930 TCTTTAAGCC
Statistics
Matches: 98, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 98 1.00
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.22
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAT
Found at i:70018673 original size:46 final size:46
Alignment explanation
Indices: 70018623--70018798 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
70018613 TGGTTGAGCA
70018623 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
70018669 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
70018714 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
70018762 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70018799 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:70018779 original size:93 final size:93
Alignment explanation
Indices: 70018620--70018790 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
70018610 GGATGGTTGA
* *
70018620 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
70018685 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
70018713 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
70018778 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
70018791 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:70024165 original size:43 final size:43
Alignment explanation
Indices: 70024117--70024314 Score: 333
Period size: 43 Copynumber: 4.6 Consensus size: 43
70024107 CCGGCATTAT
* *
70024117 GCCTGCTAGGCACGAAGGCCCGAATATACATCACCGGAACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
70024160 ACCTGCTAGGCATGAAGGCCCGAATACACATCACCGGCACGAC
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
70024203 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
70024246 GCCTGCTAGGCACGAAGGCCCGAATACACATAACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
70024289 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
70024315 TAATACCAGC
Statistics
Matches: 144, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 144 1.00
ACGTcount: A:0.31, C:0.33, G:0.25, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:70024355 original size:38 final size:38
Alignment explanation
Indices: 70024307--70024430 Score: 167
Period size: 38 Copynumber: 3.2 Consensus size: 38
70024297 GGCACGAAGG
* * * *
70024307 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
70024345 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
** *
70024383 CCCGGATATTTTACCAGCACGAAGCCTGCGGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGG-ATTTAA
70024422 GCCCGGATA
1 -CCCGGATA
70024431 CACATCAAAT
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
38 64 0.83
39 5 0.06
40 8 0.10
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.22
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:70026341 original size:15 final size:15
Alignment explanation
Indices: 70026321--70026352 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
70026311 CTCCAAATGA
70026321 CTAAACATTCAAGAG
1 CTAAACATTCAAGAG
70026336 CTAAACATTCAAGAG
1 CTAAACATTCAAGAG
70026351 CT
1 CT
70026353 CTTTTCCTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.22, G:0.12, T:0.22
Consensus pattern (15 bp):
CTAAACATTCAAGAG
Found at i:70031244 original size:22 final size:20
Alignment explanation
Indices: 70031216--70031255 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
70031206 ACATGGCTAA
70031216 CACAAGCCAAACACTAAATGTT
1 CACAAGCC-AACAC-AAATGTT
70031238 CACAAGCCAACACAAATG
1 CACAAGCCAACACAAATG
70031256 GCCAGAATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 5 0.28
22 8 0.44
ACGTcount: A:0.47, C:0.30, G:0.10, T:0.12
Consensus pattern (20 bp):
CACAAGCCAACACAAATGTT
Found at i:70032474 original size:21 final size:20
Alignment explanation
Indices: 70032444--70032482 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
70032434 TAAAACTTGT
70032444 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
70032464 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
70032483 CAAAATACTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:70034193 original size:28 final size:28
Alignment explanation
Indices: 70034161--70034217 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
70034151 ATGACAATTA
70034161 TCTGGGCTAATCAAGAAACTCATAAGAG
1 TCTGGGCTAATCAAGAAACTCATAAGAG
70034189 TCTGGGCTAATCAAGAAACTCATAAGAG
1 TCTGGGCTAATCAAGAAACTCATAAGAG
70034217 T
1 T
70034218 TTTACTCAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.39, C:0.18, G:0.21, T:0.23
Consensus pattern (28 bp):
TCTGGGCTAATCAAGAAACTCATAAGAG
Found at i:70042021 original size:41 final size:41
Alignment explanation
Indices: 70041964--70042043 Score: 133
Period size: 41 Copynumber: 2.0 Consensus size: 41
70041954 AAAGCCATTA
*
70041964 GTGGAGCCACTGTCGTCAAGCAACCATGCGATCCTCAATCG
1 GTGGAGCCACGGTCGTCAAGCAACCATGCGATCCTCAATCG
* *
70042005 GTGGATCCACGGTCGTCAAGCAACCATGCGATTCTCAAT
1 GTGGAGCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
70042044 TTCTTCCTCC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.21
Consensus pattern (41 bp):
GTGGAGCCACGGTCGTCAAGCAACCATGCGATCCTCAATCG
Found at i:70042333 original size:27 final size:27
Alignment explanation
Indices: 70042289--70042586 Score: 328
Period size: 27 Copynumber: 11.1 Consensus size: 27
70042279 TACAATGGTG
* * * *
70042289 TTTTGGTAAATCTACAAATTAATGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* *
70042316 TTTTGGTAATTTTCCAAATCAGGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
*
70042343 TTTTGGTAATTTTACAAATCATGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* * * *
70042370 TTTAGGTAATTTTCCAAATTAGGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
*
70042397 TTTTGGTAATTTTACAAATCAAGGATA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* * * * *
70042424 TTTCGATAATTTTACAAGTCGAGAGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* **
70042451 TTTTAGTAATTTTACAGGTCAAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* *
70042478 TTTTGATAATTTCACAAATCAAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
*
70042505 TTTTGGTAATTTTACAAA-CCAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* * *
70042531 TTTTGGGAATTTTACTAATCGAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
** *
70042558 TTTTGGTAATTTTGTAAACCAAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
70042585 TT
1 TT
70042587 CAATATTTTT
Statistics
Matches: 224, Mismatches: 46, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
26 23 0.10
27 201 0.90
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
TTTTGGTAATTTTACAAATCAAGGGTA
Found at i:70045809 original size:47 final size:48
Alignment explanation
Indices: 70045740--70045956 Score: 214
Period size: 46 Copynumber: 4.6 Consensus size: 48
70045730 GGTGTTGATG
* * * * **
70045740 CCATGTCCTAGAAACGGTCTTACAGTGGCTCAT-ATCTC-AAGTAGAT
1 CCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAAGCCGAT
*
70045786 ACCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCAAAGCCGAT
1 -CCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAAGCCGAT
* * * * *
70045834 GCATGTTCCAGACAT-GTCTTACACTGGCTCA-CGTCTCGAGGCCGAT
1 CCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAAGCCGAT
* * * * *
70045880 GCATGTCCCAGACAT-GTCTTACACTAGC-CTTCGTCTCAATGCCGATT
1 CCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAAGCCGA-T
70045927 CCATGTCCCAGACATGGTCTTACACTGGCT
1 CCATGTCCCAGACATGGTCTTACACTGGCT
70045957 TTCATAATGT
Statistics
Matches: 143, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
45 1 0.01
46 65 0.45
47 59 0.41
48 18 0.13
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAAGCCGAT
Found at i:70045878 original size:46 final size:46
Alignment explanation
Indices: 70045756--70046006 Score: 208
Period size: 46 Copynumber: 5.4 Consensus size: 46
70045746 CCTAGAAACG
* * ** *
70045756 GTCTTACAGTGGCTCATATCTCAA-GTAGATACCATGTCCCAGACAT
1 GTCTTACACTGGCTCACATCTCAAGGCCGAT-GCATGTCCCAGACAT
* * *
70045802 GGTCTTACACTGACT-ATCATCTCAAAGCCGATGCATGTTCCAGACAT
1 -GTCTTACACTGGCTCA-CATCTCAAGGCCGATGCATGTCCCAGACAT
* *
70045849 GTCTTACACTGGCTCACGTCTCGAGGCCGATGCATGTCCCAGACAT
1 GTCTTACACTGGCTCACATCTCAAGGCCGATGCATGTCCCAGACAT
* * * * *
70045895 GTCTTACACTAGC-CTTCGTCTCAATGCCGATTCCATGTCCCAGACAT
1 GTCTTACACTGGCTC-ACATCTCAAGGCCGA-TGCATGTCCCAGACAT
** *
70045942 GGTCTTACACTGGCTTTCA--T-AATGTGACTGATGCATGTCCCAGACAT
1 -GTCTTACACTGGCTCACATCTCAA-G-G-CCGATGCATGTCCCAGACAT
*
70045989 GTCTTACACTAGCTCACA
1 GTCTTACACTGGCTCACA
70046007 CAGAATGACC
Statistics
Matches: 168, Mismatches: 26, Indels: 21
0.78 0.12 0.10
Matches are distributed among these distances:
45 3 0.02
46 80 0.48
47 64 0.38
48 21 0.12
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (46 bp):
GTCTTACACTGGCTCACATCTCAAGGCCGATGCATGTCCCAGACAT
Found at i:70045985 original size:94 final size:93
Alignment explanation
Indices: 70045788--70046001 Score: 263
Period size: 94 Copynumber: 2.3 Consensus size: 93
70045778 AAGTAGATAC
* * *
70045788 CATGTCCCAGACATGGTCTTACACT-GACTATCATCTCAAAGCCGATGCATGTTCCAGACATGTC
1 CATGTCCCAGACAT-GTCTTACACTAGCCTATCATCTCAAAGCCGATCCATGTCCCAGACATGTC
* * *
70045852 TTACACTGGCTCACGTCTCGAGGCCGATG
65 TTACACTGGCTCACATATCGAGACCGATG
* *
70045881 CATGTCCCAGACATGTCTTACACTAGCCT-TCGTCTCAATGCCGATTCCATGTCCCAGACATGGT
1 CATGTCCCAGACATGTCTTACACTAGCCTATCATCTCAAAGCCGA-TCCATGTCCCAGACAT-GT
** * *
70045945 CTTACACTGGCTTTCATAAT-GTGACTGATG
64 CTTACACTGGCTCACAT-ATCGAGACCGATG
70045975 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
70046002 TCACACAGAA
Statistics
Matches: 105, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
92 23 0.22
93 31 0.30
94 50 0.48
95 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTAGCCTATCATCTCAAAGCCGATCCATGTCCCAGACATGTCT
TACACTGGCTCACATATCGAGACCGATG
Found at i:70048646 original size:30 final size:30
Alignment explanation
Indices: 70048612--70048672 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
70048602 TCCTTAACTC
70048612 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
70048642 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
70048672 A
1 A
70048673 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:70053359 original size:27 final size:27
Alignment explanation
Indices: 70053329--70053505 Score: 212
Period size: 27 Copynumber: 6.6 Consensus size: 27
70053319 CCTTAATCAA
* *
70053329 TAAAATGACTATTTTTCCCTTATGGGG
1 TAAAATGACTATTTTGCCCTTATGAGG
70053356 TAAAATGACTATTTTGCCCTTATGAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* *
70053383 TAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* * * *
70053410 TAAAATAACTGTTTTTCCCTTTTGAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
*
70053437 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* * * *
70053464 TAAAATGATTGTTTTGACCTT-TTATGG
1 TAAAATGACTATTTTGCCCTTATGA-GG
*
70053491 TAAGATGACTATTTT
1 TAAAATGACTATTTT
70053506 ATCCCTATGT
Statistics
Matches: 128, Mismatches: 21, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 1 0.01
27 127 0.99
ACGTcount: A:0.27, C:0.13, G:0.18, T:0.42
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGAGG
Found at i:70053453 original size:81 final size:81
Alignment explanation
Indices: 70053329--70053511 Score: 267
Period size: 81 Copynumber: 2.2 Consensus size: 81
70053319 CCTTAATCAA
*
70053329 TAAAATGACTATTTTTCCCTTATGGGGTAAAATGACTATTTTGCCCTTATGAGGTAAAATGACTG
1 TAAAATGACTATTTTTCCCTTATGAGGTAAAATGACTATTTTGCCCTTATGAGGTAAAATGACTG
* *
70053394 TTTTGCCCTTATGTGG
66 TTTTGACCTTATATGG
* * * * *
70053410 TAAAATAACTGTTTTTCCCTTTTGAGGTAAAATGACTATTTTGCCCTTATGTGGTAAAATGATTG
1 TAAAATGACTATTTTTCCCTTATGAGGTAAAATGACTATTTTGCCCTTATGAGGTAAAATGACTG
*
70053475 TTTTGACCTTTTATGG
66 TTTTGACCTTATATGG
*
70053491 TAAGATGACTATTTTATCCCT
1 TAAAATGACTATTTT-TCCCT
70053512 ATGTGATTTA
Statistics
Matches: 89, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
81 84 0.94
82 5 0.06
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.42
Consensus pattern (81 bp):
TAAAATGACTATTTTTCCCTTATGAGGTAAAATGACTATTTTGCCCTTATGAGGTAAAATGACTG
TTTTGACCTTATATGG
Found at i:70053516 original size:54 final size:53
Alignment explanation
Indices: 70053329--70053505 Score: 237
Period size: 54 Copynumber: 3.3 Consensus size: 53
70053319 CCTTAATCAA
* * * *
70053329 TAAAATGACTATTTTTCCCTTATGGGGTAAAATGACTATTTTGCCCTTATGAGG
1 TAAAATGACTATTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTT-TTAGG
* * *
70053383 TAAAATGACTGTTTTGCCCTTATGTGGTAAAATAACTGTTTTTCCCTTTTGAGG
1 TAAAATGACTATTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTTT-AGG
* *
70053437 TAAAATGACTATTTTGCCCTTATGTGGTAAAATGATTGTTTTGACCTTTTATGG
1 TAAAATGACTATTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTTTA-GG
*
70053491 TAAGATGACTATTTT
1 TAAAATGACTATTTT
70053506 ATCCCTATGT
Statistics
Matches: 108, Mismatches: 13, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
53 2 0.02
54 106 0.98
ACGTcount: A:0.27, C:0.13, G:0.18, T:0.42
Consensus pattern (53 bp):
TAAAATGACTATTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTTTAGG
Found at i:70056079 original size:43 final size:43
Alignment explanation
Indices: 70056026--70056145 Score: 213
Period size: 43 Copynumber: 2.8 Consensus size: 43
70056016 GCTGGTATTA
* * *
70056026 TATTTGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGTTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGCG
70056069 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGCG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGCG
70056112 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCC
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCC
70056146 TAGCAGGCTT
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 74 1.00
ACGTcount: A:0.09, C:0.28, G:0.33, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGCG
Found at i:70056142 original size:16 final size:16
Alignment explanation
Indices: 70056121--70056161 Score: 82
Period size: 16 Copynumber: 2.6 Consensus size: 16
70056111 GTATTCGGGC
70056121 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
70056137 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
70056153 CTTCGTGCC
1 CTTCGTGCC
70056162 GGTGATGTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.10, C:0.34, G:0.29, T:0.27
Consensus pattern (16 bp):
CTTCGTGCCTAGCAGG
Found at i:70068739 original size:25 final size:25
Alignment explanation
Indices: 70068710--70068764 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
70068700 CACCACTGCT
70068710 TGCAAAAATAAACACACTTGCACAC
1 TGCAAAAATAAACACACTTGCACAC
*
70068735 TGCAAAAATAAACGCACTTGCACAC
1 TGCAAAAATAAACACACTTGCACAC
*
70068760 AGCAA
1 TGCAA
70068765 GACTTGAACC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.47, C:0.27, G:0.11, T:0.15
Consensus pattern (25 bp):
TGCAAAAATAAACACACTTGCACAC
Found at i:70075010 original size:14 final size:14
Alignment explanation
Indices: 70074991--70075017 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
70074981 CAAATACTTG
70074991 ATTTGTTCTTAATT
1 ATTTGTTCTTAATT
70075005 ATTTGTTCTTAAT
1 ATTTGTTCTTAAT
70075018 GCTTGAGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.63
Consensus pattern (14 bp):
ATTTGTTCTTAATT
Done.