Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 206 of 235
Found at i:70080796 original size:6 final size:6
Alignment explanation
Indices: 70080780--70080839 Score: 77
Period size: 6 Copynumber: 10.2 Consensus size: 6
70080770 TTTTGATTTA
* * *
70080780 TTTATT CTTATT TTTATT TTTA-T TTTATT TTTCTT TTTCTT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
*
70080827 TTTATT TTCATT T
1 TTTATT TTTATT T
70080840 CAATTTTATT
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
5 5 0.10
6 43 0.90
ACGTcount: A:0.13, C:0.07, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTATT
Found at i:70080801 original size:22 final size:21
Alignment explanation
Indices: 70080763--70080827 Score: 67
Period size: 23 Copynumber: 2.9 Consensus size: 21
70080753 CATTGGATCC
*
70080763 TCTTATTTTTTGATTTATTTAT
1 TCTTATTTTTT-TTTTATTTAT
70080785 TCTTATTTTTATTTTTATTTTAT
1 TCTTATTTTT-TTTTTA-TTTAT
* *
70080808 TTTTCTTTTTCTTTTTATTT
1 TCTTATTTTT-TTTTTATTT
70080828 TTATTTTCAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
22 17 0.46
23 20 0.54
ACGTcount: A:0.14, C:0.06, G:0.02, T:0.78
Consensus pattern (21 bp):
TCTTATTTTTTTTTTATTTAT
Found at i:70080834 original size:23 final size:22
Alignment explanation
Indices: 70080776--70080859 Score: 71
Period size: 23 Copynumber: 3.6 Consensus size: 22
70080766 TATTTTTTGA
*
70080776 TTTA-TTTATTCTTATTTTTATT
1 TTTATTTTATT-TTCTTTTTATT
*
70080798 TTTATTTTATTTTTCTTTTTCTT
1 TTTATTTTA-TTTTCTTTTTATT
**
70080821 TTTATTTTTATTTTCATTTCAATTT
1 TTTA-TTTTATTTTC-TTTTTA-TT
70080846 TATTATTTTATTTT
1 T-TTATTTTATTTT
70080860 GAAAGACATA
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
22 4 0.08
23 22 0.43
24 10 0.20
25 12 0.24
26 3 0.06
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (22 bp):
TTTATTTTATTTTCTTTTTATT
Found at i:70087729 original size:55 final size:54
Alignment explanation
Indices: 70087642--70087896 Score: 278
Period size: 55 Copynumber: 4.8 Consensus size: 54
70087632 ATTAGGGTTT
*
70087642 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * *
70087697 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
70087752 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
*
70087805 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * *
70087854 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
70087897 GTACCCGTGT
Statistics
Matches: 172, Mismatches: 21, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
49 40 0.23
52 7 0.04
53 41 0.24
54 12 0.07
55 68 0.40
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:70087848 original size:108 final size:110
Alignment explanation
Indices: 70087649--70087849 Score: 327
Period size: 108 Copynumber: 1.8 Consensus size: 110
70087639 TTTAAGGATA
*
70087649 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
70087714 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
70087759 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
70087821 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
70087850 TCAAAAGGAT
Statistics
Matches: 85, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.56
109 7 0.08
110 27 0.32
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:70099978 original size:35 final size:34
Alignment explanation
Indices: 70099929--70100024 Score: 120
Period size: 35 Copynumber: 2.8 Consensus size: 34
70099919 CTCTCAACTA
* * * *
70099929 GGGCCTTAGTCCATTTCATTAACAGTAGCAATTT
1 GGGCCTAAGCCCATTTCAATAACAGTAGCAATAT
* * *
70099963 GGGGCCTGAGCCCATTTCAATAACATTAGCAGTAT
1 -GGGCCTAAGCCCATTTCAATAACAGTAGCAATAT
70099998 GGGCCTAAGCCCATTTCAATAACAGTA
1 GGGCCTAAGCCCATTTCAATAACAGTA
70100025 TCAGTACAGT
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
34 25 0.47
35 28 0.53
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (34 bp):
GGGCCTAAGCCCATTTCAATAACAGTAGCAATAT
Found at i:70100009 original size:34 final size:35
Alignment explanation
Indices: 70099929--70100030 Score: 125
Period size: 34 Copynumber: 2.9 Consensus size: 35
70099919 CTCTCAACTA
* * * * *
70099929 GGGCCTTAGTCCATTTCATTAACAGTAGCAATTTG
1 GGGCCTAAGCCCATTTCAATAACAGTAGCAGTATG
* *
70099964 GGGCCTGAGCCCATTTCAATAACATTAGCAGTAT-
1 GGGCCTAAGCCCATTTCAATAACAGTAGCAGTATG
*
70099998 GGGCCTAAGCCCATTTCAATAACAGTATCAGTA
1 GGGCCTAAGCCCATTTCAATAACAGTAGCAGTA
70100031 CAGTATGCAA
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
34 30 0.52
35 28 0.48
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (35 bp):
GGGCCTAAGCCCATTTCAATAACAGTAGCAGTATG
Found at i:70101079 original size:509 final size:509
Alignment explanation
Indices: 70100122--70101139 Score: 2027
Period size: 509 Copynumber: 2.0 Consensus size: 509
70100112 AATCGACCCA
*
70100122 CCCGACCCTACACTCCAAGTAGCACCGGTTGCGACACTAAAATAATATTTGCGGCAGAGCTACCA
1 CCCGACCCTACACTCCAAGTAGCACCAGTTGCGACACTAAAATAATATTTGCGGCAGAGCTACCA
70100187 GTAATAGGCTTATAGCCTTTCAGTACACTTCCTCCAAATCATATATCCCACCCCATGCAATGCAA
66 GTAATAGGCTTATAGCCTTTCAGTACACTTCCTCCAAATCATATATCCCACCCCATGCAATGCAA
70100252 CATAATATAAATGTATAAACAGTATAAATGACATGCTCAAACAGTCATACATCACATAGGGGTAT
131 CATAATATAAATGTATAAACAGTATAAATGACATGCTCAAACAGTCATACATCACATAGGGGTAT
70100317 ATCAGTCATTTACCAAAGATAAGGGTCCAAGTTCACTTACCTGCCCAACAATAGGTCCATAGTCG
196 ATCAGTCATTTACCAAAGATAAGGGTCCAAGTTCACTTACCTGCCCAACAATAGGTCCATAGTCG
70100382 TATTGGGCGACCTGTGCAACCTTAACAGACAATCAGTGAAAATGGGCCCAAAGCCCATAACACGA
261 TATTGGGCGACCTGTGCAACCTTAACAGACAATCAGTGAAAATGGGCCCAAAGCCCATAACACGA
70100447 CCCATGTAGACCCACACTCCTATGTGGCCCAATAAGCCCAAAAATGGCTTTGGCCGTGCGCACTA
326 CCCATGTAGACCCACACTCCTATGTGGCCCAATAAGCCCAAAAATGGCTTTGGCCGTGCGCACTA
70100512 CACAACCTGACCCAATAATTTCCATACATTCATCTGATTCATTCGTGTGGGCCCATGAGCTCGTA
391 CACAACCTGACCCAATAATTTCCATACATTCATCTGATTCATTCGTGTGGGCCCATGAGCTCGTA
70100577 GGGCCTATTTCGGCCCAACGTGGCCCAAAATAGCCTAAGCCCATGACATCTCTC
456 GGGCCTATTTCGGCCCAACGTGGCCCAAAATAGCCTAAGCCCATGACATCTCTC
70100631 CCCGACCCTACACTCCAAGTAGCACCAGTTGCGACACTAAAATAATATTTGCGGCAGAGCTACCA
1 CCCGACCCTACACTCCAAGTAGCACCAGTTGCGACACTAAAATAATATTTGCGGCAGAGCTACCA
70100696 GTAATAGGCTTATAGCCTTTCAGTACACTTCCTCCAAATCATATATCCCACCCCATGCAATGCAA
66 GTAATAGGCTTATAGCCTTTCAGTACACTTCCTCCAAATCATATATCCCACCCCATGCAATGCAA
70100761 CATAATATAAATGTATAAACAGTATAAATGACATGCTCAAACAGTCATACATCACATAGGGGTAT
131 CATAATATAAATGTATAAACAGTATAAATGACATGCTCAAACAGTCATACATCACATAGGGGTAT
70100826 ATCAGTCATTTACCAAAGATAAGGGTCCAAGTTCACTTACCTGCCCAACAATAGGTCCATAGTCG
196 ATCAGTCATTTACCAAAGATAAGGGTCCAAGTTCACTTACCTGCCCAACAATAGGTCCATAGTCG
70100891 TATTGGGCGACCTGTGCAACCTTAACAGACAATCAGTGAAAATGGGCCCAAAGCCCATAACACGA
261 TATTGGGCGACCTGTGCAACCTTAACAGACAATCAGTGAAAATGGGCCCAAAGCCCATAACACGA
70100956 CCCATGTAGACCCACACTCCTATGTGGCCCAATAAGCCCAAAAATGGCTTTGGCCGTGCGCACTA
326 CCCATGTAGACCCACACTCCTATGTGGCCCAATAAGCCCAAAAATGGCTTTGGCCGTGCGCACTA
70101021 CACAACCTGACCCAATAATTTCCATACATTCATCTGATTCATTCGTGTGGGCCCATGAGCTCGTA
391 CACAACCTGACCCAATAATTTCCATACATTCATCTGATTCATTCGTGTGGGCCCATGAGCTCGTA
70101086 GGGCCTATTTCGGCCCAACGTGGCCCAAAATAGCCTAAGCCCATGACATCTCTC
456 GGGCCTATTTCGGCCCAACGTGGCCCAAAATAGCCTAAGCCCATGACATCTCTC
70101140 AAGGTGGCCT
Statistics
Matches: 508, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
509 508 1.00
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (509 bp):
CCCGACCCTACACTCCAAGTAGCACCAGTTGCGACACTAAAATAATATTTGCGGCAGAGCTACCA
GTAATAGGCTTATAGCCTTTCAGTACACTTCCTCCAAATCATATATCCCACCCCATGCAATGCAA
CATAATATAAATGTATAAACAGTATAAATGACATGCTCAAACAGTCATACATCACATAGGGGTAT
ATCAGTCATTTACCAAAGATAAGGGTCCAAGTTCACTTACCTGCCCAACAATAGGTCCATAGTCG
TATTGGGCGACCTGTGCAACCTTAACAGACAATCAGTGAAAATGGGCCCAAAGCCCATAACACGA
CCCATGTAGACCCACACTCCTATGTGGCCCAATAAGCCCAAAAATGGCTTTGGCCGTGCGCACTA
CACAACCTGACCCAATAATTTCCATACATTCATCTGATTCATTCGTGTGGGCCCATGAGCTCGTA
GGGCCTATTTCGGCCCAACGTGGCCCAAAATAGCCTAAGCCCATGACATCTCTC
Found at i:70108286 original size:29 final size:29
Alignment explanation
Indices: 70108254--70108330 Score: 118
Period size: 29 Copynumber: 2.7 Consensus size: 29
70108244 AATTATATTC
*
70108254 ATATGGCCCATTAGGCCCAAATCACCTGT
1 ATATGGCCCATTAGGCCCAAATCACATGT
* *
70108283 ATATGGCCCATTCGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATGT
*
70108312 ATATGGCCCGTTAGGCCCA
1 ATATGGCCCATTAGGCCCA
70108331 GTCACATTCA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATGT
Found at i:70108290 original size:58 final size:58
Alignment explanation
Indices: 70108219--70108330 Score: 136
Period size: 58 Copynumber: 1.9 Consensus size: 58
70108209 AATTTCACAT
* * *
70108219 ACCTATATCTGGCCCCATTAAGCCC-AATTATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTATATATGG-CCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
* ** * *
70108277 ACCTGTATATGGCCCATTCGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTATATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCA
70108331 GTCACATTCA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
57 10 0.22
58 35 0.78
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (58 bp):
ACCTATATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:70109711 original size:16 final size:16
Alignment explanation
Indices: 70109673--70109711 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
70109663 ATTTCCTAAC
* *
70109673 TTTTGGATTTTGGGAT
1 TTTTGGGTTTCGGGAT
70109689 TTTTGGGTTTCGGGAT
1 TTTTGGGTTTCGGGAT
70109705 TTTTGGG
1 TTTTGGG
70109712 GCGTTACAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.08, C:0.03, G:0.36, T:0.54
Consensus pattern (16 bp):
TTTTGGGTTTCGGGAT
Found at i:70112604 original size:28 final size:29
Alignment explanation
Indices: 70112572--70112681 Score: 129
Period size: 28 Copynumber: 3.9 Consensus size: 29
70112562 CTGTATCTGG
* *
70112572 CCATTAAGCCC-AATCATATTCATATGGC
1 CCATTAGGCCCAAATCACATTCATATGGC
*
70112600 CCATT-GGCCCAAATCACCTGT-ATATGGC
1 CCATTAGGCCCAAATCACAT-TCATATGGC
* *
70112628 CTATTAGGCCCAAATCACATTTATATGGC
1 CCATTAGGCCCAAATCACATTCATATGGC
*
70112657 CCATTAGGCTC-AATCACATTCATAT
1 CCATTAGGCCCAAATCACATTCATAT
70112682 TCATGCTCAC
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
27 4 0.06
28 36 0.51
29 30 0.43
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (29 bp):
CCATTAGGCCCAAATCACATTCATATGGC
Found at i:70112643 original size:29 final size:29
Alignment explanation
Indices: 70112563--70112675 Score: 119
Period size: 29 Copynumber: 4.0 Consensus size: 29
70112553 TTCACATAAC
* * *
70112563 TGTATCTGG-CCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
70112590 T-TCATATGGCCCATT-GGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
*
70112618 TGTATATGGCCTATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
70112647 TTTATATGGCCCATTAGGCTC-AATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
70112675 T
1 T
70112676 TCATATTCAT
Statistics
Matches: 72, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
26 1 0.01
27 10 0.14
28 30 0.42
29 31 0.43
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:70116967 original size:28 final size:29
Alignment explanation
Indices: 70116924--70117038 Score: 130
Period size: 29 Copynumber: 4.0 Consensus size: 29
70116914 TACCTGTATC
* *
70116924 TGGCCCATTAAGCCCAATCATATTCT-TA
1 TGGCCCATTAGGCCCAATCACATTCTATA
* *
70116952 TGACCCATTAGGCCCAAATCAC-TTGTATA
1 TGGCCCATTAGGCCC-AATCACATTCTATA
*
70116981 TGGCCCATTAGTCCCAGATCACATT-TATA
1 TGGCCCATTAGGCCCA-ATCACATTCTATA
*
70117010 TGGCCCGTTAGGCCCAATCACATTC-ATA
1 TGGCCCATTAGGCCCAATCACATTCTATA
70117038 T
1 T
70117039 TCATGCTCAC
Statistics
Matches: 74, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
28 29 0.39
29 43 0.58
30 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.30
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAATCACATTCTATA
Found at i:70117029 original size:57 final size:57
Alignment explanation
Indices: 70116918--70117030 Score: 142
Period size: 57 Copynumber: 2.0 Consensus size: 57
70116908 TTCACATACC
* *
70116918 TGTATCTGGCCCATTAAGCCCAATCATATTCTTATGACCCATTAGGCCCAAATCACT
1 TGTATATGGCCCATTAAGCCCAATCACATTCTTATGACCCATTAGGCCCAAATCACT
* *
70116975 TGTATATGGCCCATT-AGTCCCAGATCACATT-TATATGGCCCGTTAGGCCC-AATCAC
1 TGTATATGGCCCATTAAG-CCCA-ATCACATTCT-TATGACCCATTAGGCCCAAATCAC
70117031 ATTCATATTC
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
56 2 0.04
57 25 0.51
58 22 0.45
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (57 bp):
TGTATATGGCCCATTAAGCCCAATCACATTCTTATGACCCATTAGGCCCAAATCACT
Found at i:70117272 original size:16 final size:16
Alignment explanation
Indices: 70117248--70117290 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
70117238 GTAGCCAAAC
*
70117248 TTTCAACTTTTCGGTA
1 TTTCAACTTTTCGGCA
*
70117264 TTTCGACTTTTCGGCA
1 TTTCAACTTTTCGGCA
*
70117280 TTTCAGCTTTT
1 TTTCAACTTTT
70117291 GCCGACACAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.14, C:0.21, G:0.14, T:0.51
Consensus pattern (16 bp):
TTTCAACTTTTCGGCA
Found at i:70118397 original size:8 final size:8
Alignment explanation
Indices: 70118386--70118416 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
70118376 AAAAATTCAA
*
70118386 GATTTCTG
1 GATTTTTG
70118394 GATTTTTG
1 GATTTTTG
70118402 GATTTTTG
1 GATTTTTG
70118410 GATTTTT
1 GATTTTT
70118417 AGGTTTCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.13, C:0.03, G:0.23, T:0.61
Consensus pattern (8 bp):
GATTTTTG
Found at i:70119524 original size:34 final size:34
Alignment explanation
Indices: 70119476--70119573 Score: 169
Period size: 34 Copynumber: 2.9 Consensus size: 34
70119466 CTCAATTAAA
* * *
70119476 GCCTTAGCCCATTTCATTAACAGTAGCAGTCTGG
1 GCCTGAGCCCATTTCAGTAACAGTAGCAGCCTGG
70119510 GCCTGAGCCCATTTCAGTAACAGTAGCAGCCTGG
1 GCCTGAGCCCATTTCAGTAACAGTAGCAGCCTGG
70119544 GCCTGAGCCCATTTCAGTAACAGTAGCAGC
1 GCCTGAGCCCATTTCAGTAACAGTAGCAGC
70119574 AGAATATGCA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 61 1.00
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.23
Consensus pattern (34 bp):
GCCTGAGCCCATTTCAGTAACAGTAGCAGCCTGG
Found at i:70125324 original size:45 final size:45
Alignment explanation
Indices: 70125224--70125350 Score: 147
Period size: 45 Copynumber: 2.9 Consensus size: 45
70125214 TTTTCTCAAA
* *
70125224 TCACCGGCATT-TCGCCTGTTAGGCTCG-AGGCCCG-ATATCAGT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGT
70125266 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT-A-T
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA-TCAGT
** * *
70125310 CTCACCGGCATTATAGTTTGCTAAGCTCAAAGGCCCGAATA
1 -TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
70125351 ATCAAGTCAA
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
42 11 0.15
43 14 0.19
44 8 0.11
45 40 0.54
46 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGT
Found at i:70125727 original size:43 final size:43
Alignment explanation
Indices: 70125679--70126005 Score: 618
Period size: 43 Copynumber: 7.6 Consensus size: 43
70125669 CCAGCATTAC
70125679 GCCTGCTAGGCACGAAGGCCCGAATACACACCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACACCACCGGCACGAA
70125722 GCCTGCTAGGCACGAAGGCCCGAATACACACCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACACCACCGGCACGAA
70125765 GCCTGCTAGGCACGAAGGCCCGAATACACACCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACACCACCGGCACGAA
70125808 GCCTGCTAGGCACGAAGGCCCGAATACACACCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACACCACCGGCACGAA
70125851 GCCTGCTAGGCACGAAGGCCCGAATACACACCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACACCACCGGCACGAA
* *
70125894 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACACCACCGGCACGAA
* *
70125937 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACACCACCGGCACGAA
70125980 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
70126006 TAATACCAGC
Statistics
Matches: 282, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 282 1.00
ACGTcount: A:0.30, C:0.36, G:0.25, T:0.09
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACACCACCGGCACGAA
Found at i:70126297 original size:43 final size:43
Alignment explanation
Indices: 70126235--70126381 Score: 208
Period size: 43 Copynumber: 3.5 Consensus size: 43
70126225 CACATATCCA
* * * *
70126235 ATCACCGTCACGAATCCTGCTAGGCACAAAGGCCCGAATACAC
1 ATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
70126278 ATCACCGGCACTAAGCCTGCTAGGCACGAAGGCTCGAATACAC
1 ATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
70126321 ATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATATA-
1 ATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
70126363 AT-ACCAGCACTAGGCCTGC
1 ATCACCGGCACTAAGCCTGC
70126382 GGGATTTATC
Statistics
Matches: 95, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
41 15 0.16
42 2 0.02
43 78 0.82
ACGTcount: A:0.31, C:0.33, G:0.22, T:0.14
Consensus pattern (43 bp):
ATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACAC
Found at i:70126407 original size:38 final size:38
Alignment explanation
Indices: 70126353--70126436 Score: 114
Period size: 38 Copynumber: 2.2 Consensus size: 38
70126343 GGCACGAAGG
* * *
70126353 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCAGCGGGATTTAT
* *
70126391 CCCGGATATAATACCAGCACGAAGCCAGCGGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCAGCGGGATTTAT
*
70126429 CCCAAATA
1 CCCGAATA
70126437 CACATCAAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.19
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCAGCGGGATTTAT
Found at i:70126546 original size:355 final size:355
Alignment explanation
Indices: 70125882--70126589 Score: 1301
Period size: 355 Copynumber: 2.0 Consensus size: 355
70125872 GAATACACAC
*
70125882 CACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGG
1 CACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGG
70125947 CACGAAGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATATAATAC
66 CACGAAGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATATAATAC
*
70126012 CAGCACTAGGACTGTGGGATTTATCCCGGATATAATACCAGCACGAAGCCCACGGGATTTAACCC
131 CAGCACTAGGACTGCGGGATTTATCCCGGATATAATACCAGCACGAAGCCCACGGGATTTAACCC
* *
70126077 CAATACACATCAAATATCATGCATATTTAATCATATACTAATACATCTCATTCAACATATCACAT
196 AAATACACATCAAATATCATACATATTTAATCATATACTAATACATCTCATTCAACATATCACAT
70126142 TCGTAGTCATTTGCAACATTCAGGTATAAGCTCCATATGAACACCATCGTTTACATTTCGGTTCA
261 TCGTAGTCATTTGCAACATTCAGGTATAAGCTCCATATGAACACCATCGTTTACATTTCGGTTCA
*
70126207 AAATTCATTCATAAATATCACATATCCAAT
326 AAAGTCATTCATAAATATCACATATCCAAT
* *
70126237 CACCGTCACGAATCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGG
1 CACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGG
*
70126302 CACGAAGGCTCGAATACACATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATATAATAC
66 CACGAAGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATATAATAC
*
70126367 CAGCACTAGGCCTGCGGGATTTATCCCGGATATAATACCAGCACGAAG-CCAGCGGGATTTAACC
131 CAGCACTAGGACTGCGGGATTTATCCCGGATATAATACCAGCACGAAGCCCA-CGGGATTTAACC
*
70126431 CAAATACACATCAAATATCATACATATTTAATCATATATTAATACATCTCATTCAACATATCACA
195 CAAATACACATCAAATATCATACATATTTAATCATATACTAATACATCTCATTCAACATATCACA
*
70126496 TTCGTAGTCATTTGCAACATTCGGGTATAAGCTCCATATGAACACCATCGTTTACATTTCGGTTC
260 TTCGTAGTCATTTGCAACATTCAGGTATAAGCTCCATATGAACACCATCGTTTACATTTCGGTTC
70126561 AAAAGTCATTCATAAATATCACATATCCA
325 AAAAGTCATTCATAAATATCACATATCCA
70126590 TTTCACCATT
Statistics
Matches: 341, Mismatches: 11, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
354 3 0.01
355 338 0.99
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (355 bp):
CACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGG
CACGAAGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATATAATAC
CAGCACTAGGACTGCGGGATTTATCCCGGATATAATACCAGCACGAAGCCCACGGGATTTAACCC
AAATACACATCAAATATCATACATATTTAATCATATACTAATACATCTCATTCAACATATCACAT
TCGTAGTCATTTGCAACATTCAGGTATAAGCTCCATATGAACACCATCGTTTACATTTCGGTTCA
AAAGTCATTCATAAATATCACATATCCAAT
Found at i:70131034 original size:43 final size:43
Alignment explanation
Indices: 70130986--70131175 Score: 256
Period size: 43 Copynumber: 4.4 Consensus size: 43
70130976 ATCGAGATGA
* * * * *
70130986 GATTACATGTAAGACCATGTTTGGGACATTGTCATTG-TATTGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTA-TAT
*
70131029 GATTACGTGTAAGACCATGTTTGGGACATTGGCATCGTTATAT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATAT
*
70131072 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTTATAT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATAT
* * *
70131115 GATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATAT
* *
70131158 GATAACATGTAAGACCAT
1 GATTACGTGTAAGACCAT
70131176 ATCTTGGCAT
Statistics
Matches: 133, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
43 131 0.98
44 2 0.02
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATAT
Found at i:70131131 original size:86 final size:86
Alignment explanation
Indices: 70130986--70131175 Score: 283
Period size: 86 Copynumber: 2.2 Consensus size: 86
70130976 ATCGAGATGA
* * * *
70130986 GATTACATGTAAGACCATGTTTGGGACATTGTCATTGTATTGTGATTACGTGTAAGACCATGTTT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTATGATTACGTGTAAGACCATGTCT
*
70131051 GGGACATTGGCATCGTTATAT
66 GGGACATTGGCATCGATATAT
* *
70131072 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGT-TATATGATTTCGTGTAAGACCATGTC
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT-TATGATTACGTGTAAGACCATGTC
*
70131136 TGGGACATTGGCATCGATATGT
65 TGGGACATTGGCATCGATATAT
*
70131158 GATAACATGTAAGACCAT
1 GATTACATGTAAGACCAT
70131176 ATCTTGGCAT
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
85 1 0.01
86 92 0.99
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (86 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTATGATTACGTGTAAGACCATGTCT
GGGACATTGGCATCGATATAT
Found at i:70140942 original size:77 final size:77
Alignment explanation
Indices: 70140859--70141011 Score: 297
Period size: 77 Copynumber: 2.0 Consensus size: 77
70140849 GAAGAATTGG
*
70140859 CTAGCAAGTTGTGTGCTAAGGCCGAATATAACTTTTGCATGTTAATGAGCAATGCATGTGTTAAA
1 CTAGCAAGTTGTGTGCTAAGGCCGAATATAACTTTTGCATGGTAATGAGCAATGCATGTGTTAAA
70140924 TTGATGGAAAGA
66 TTGATGGAAAGA
70140936 CTAGCAAGTTGTGTGCTAAGGCCGAATATAACTTTTGCATGGTAATGAGCAATGCATGTGTTAAA
1 CTAGCAAGTTGTGTGCTAAGGCCGAATATAACTTTTGCATGGTAATGAGCAATGCATGTGTTAAA
70141001 TTGATGGAAAG
66 TTGATGGAAAG
70141012 GGAGAGGATG
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
77 75 1.00
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.31
Consensus pattern (77 bp):
CTAGCAAGTTGTGTGCTAAGGCCGAATATAACTTTTGCATGGTAATGAGCAATGCATGTGTTAAA
TTGATGGAAAGA
Found at i:70141691 original size:143 final size:143
Alignment explanation
Indices: 70141432--70141706 Score: 388
Period size: 143 Copynumber: 1.9 Consensus size: 143
70141422 CGATGTGATT
* * **
70141432 AAATCATGCTCAATGTGTGGCTATTGAGCCGAATGTGCAAGGACGATATGTGCCTTGTGTTTGAG
1 AAATCATGCTCAATGTCTGGCTATTGAGCCGAATGTGCAAGAACGATAAATGCCTTGTGTTTGAG
* * * *
70141497 TTTCGCAAATGAAAATGAAATATGAATGTGCCATGAATTATTGTTAGATGTGCATGATTAATTGA
66 TTTCGCAAACGAAAATGAAATACGAATGGGCCATGAATTATTGTTAAATGTGCATGATTAATTGA
70141562 ATTGAGCAAATTA
131 ATTGAGCAAATTA
** * * *
70141575 AAATCATGCTCTTTGTCTGGCTATTGAGCCGAATTTGCAAGAATGATAAATGTCTTGTGTTTGAG
1 AAATCATGCTCAATGTCTGGCTATTGAGCCGAATGTGCAAGAACGATAAATGCCTTGTGTTTGAG
* * * * *
70141640 TTTTGCTAACGAAAATGAAATACGAATGGGCCATGATTTATTGTTAAATGTGCATGGTTATTTGA
66 TTTCGCAAACGAAAATGAAATACGAATGGGCCATGAATTATTGTTAAATGTGCATGATTAATTGA
70141705 AT
131 AT
70141707 GCTGTCCGAG
Statistics
Matches: 114, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
143 114 1.00
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (143 bp):
AAATCATGCTCAATGTCTGGCTATTGAGCCGAATGTGCAAGAACGATAAATGCCTTGTGTTTGAG
TTTCGCAAACGAAAATGAAATACGAATGGGCCATGAATTATTGTTAAATGTGCATGATTAATTGA
ATTGAGCAAATTA
Found at i:70141806 original size:39 final size:40
Alignment explanation
Indices: 70141711--70141894 Score: 186
Period size: 40 Copynumber: 4.7 Consensus size: 40
70141701 TTGAATGCTG
* *
70141711 TCCGAGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
70141749 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* *
70141790 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
70141829 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
70141868 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
70141895 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 12, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
39 53 0.43
40 59 0.48
41 11 0.09
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:70141916 original size:79 final size:79
Alignment explanation
Indices: 70141763--70141927 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
70141753 GGACTAAGAT
* ** *
70141763 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
70141828 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
70141842 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
70141904 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
70141921 CCGAAGG
1 CCGAAGG
70141928 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.04
79 46 0.62
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:70149867 original size:39 final size:40
Alignment explanation
Indices: 70149772--70150033 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
70149762 TTGAATGATG
*
70149772 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
70149810 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
70149851 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
70149890 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
70149929 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
70149968 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
70150007 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
70150034 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:70159961 original size:36 final size:36
Alignment explanation
Indices: 70159916--70160027 Score: 118
Period size: 36 Copynumber: 3.1 Consensus size: 36
70159906 GTGTCTCGGT
* **
70159916 TGGACTAGCTCTTCGGAGCCAT-TGGTGTGTTTTGGA
1 TGGATTAGCTCTTATGAG-CATATGGTGTGTTTTGGA
* * ** * *
70159952 TGGATTAGCTCTTATGAACATCTAATGTGCTTTAGA
1 TGGATTAGCTCTTATGAGCATATGGTGTGTTTTGGA
*
70159988 TGGATTAGCTCTTATGAGCATATGGTGTGTTTTGGT
1 TGGATTAGCTCTTATGAGCATATGGTGTGTTTTGGA
70160024 TGGA
1 TGGA
70160028 ATATTGATGT
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
35 3 0.05
36 57 0.95
ACGTcount: A:0.20, C:0.12, G:0.29, T:0.39
Consensus pattern (36 bp):
TGGATTAGCTCTTATGAGCATATGGTGTGTTTTGGA
Found at i:70163348 original size:14 final size:15
Alignment explanation
Indices: 70163329--70163359 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
70163319 GCATATACAT
70163329 ACAACCAA-ACATCA
1 ACAACCAAGACATCA
70163343 ACAACCAAGACATCA
1 ACAACCAAGACATCA
70163358 AC
1 AC
70163360 TCATCATTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.55, C:0.35, G:0.03, T:0.06
Consensus pattern (15 bp):
ACAACCAAGACATCA
Found at i:70165388 original size:21 final size:21
Alignment explanation
Indices: 70165364--70165407 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
70165354 TCTCATAACT
*
70165364 TCCTCAAGTTCCCACTTAGCC
1 TCCTCAAGTTCCCACATAGCC
*
70165385 TCCTCAGGTTCCCACATAGCC
1 TCCTCAAGTTCCCACATAGCC
70165406 TC
1 TC
70165408 TTCGACCCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.18, C:0.43, G:0.11, T:0.27
Consensus pattern (21 bp):
TCCTCAAGTTCCCACATAGCC
Found at i:70169690 original size:14 final size:14
Alignment explanation
Indices: 70169671--70169698 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
70169661 CTGCAAATAA
70169671 TTTTGAACTGAAAC
1 TTTTGAACTGAAAC
70169685 TTTTGAACTGAAAC
1 TTTTGAACTGAAAC
70169699 CTAACACAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (14 bp):
TTTTGAACTGAAAC
Found at i:70171477 original size:43 final size:42
Alignment explanation
Indices: 70171416--70171500 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 42
70171406 ATTTATATTT
*
70171416 CCTGCTGACTTCATTGTTCTAGACGTAGAGGAGGATAACAAC
1 CCTGCTGACTTCATTGTTCTAGACGTAGAGAAGGATAACAAC
* *
70171458 NCCTGCTGACTTCGTTGTTCTAGACGTAGAGAAGGATAGCAAC
1 -CCTGCTGACTTCATTGTTCTAGACGTAGAGAAGGATAACAAC
70171501 ACTTCTTTGA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.26
Consensus pattern (42 bp):
CCTGCTGACTTCATTGTTCTAGACGTAGAGAAGGATAACAAC
Found at i:70172099 original size:50 final size:50
Alignment explanation
Indices: 70172024--70172124 Score: 166
Period size: 50 Copynumber: 2.0 Consensus size: 50
70172014 GGCACTTTTA
* *
70172024 AGGTAAAAAATACCCTCCTAAAACCTTATTTTGATGAGATTCACAGCAGG
1 AGGTAAAAAATACCCGCCTAAAACCTTATTTTGATGAGATTCACAACAGG
* *
70172074 AGGTAAACAATAGCCGCCTAAAACCTTATTTTGATGAGATTCACAACAGG
1 AGGTAAAAAATACCCGCCTAAAACCTTATTTTGATGAGATTCACAACAGG
70172124 A
1 A
70172125 ATGAGGAGTA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.25
Consensus pattern (50 bp):
AGGTAAAAAATACCCGCCTAAAACCTTATTTTGATGAGATTCACAACAGG
Found at i:70191146 original size:36 final size:37
Alignment explanation
Indices: 70191115--70191212 Score: 130
Period size: 36 Copynumber: 2.7 Consensus size: 37
70191105 CTAGCTTTTC
70191115 GAAGCCAT-TGGTGTGTTTTGGATGGATTAGCTCTTAT
1 GAAG-CATCTGGTGTGTTTTGGATGGATTAGCTCTTAT
* * *
70191152 GAA-CATCTAGTGTGTTTCGGATGGATTAACTCTTAT
1 GAAGCATCTGGTGTGTTTTGGATGGATTAGCTCTTAT
*
70191188 G-AGCATCTGGTGTGTTTTGGTTGGA
1 GAAGCATCTGGTGTGTTTTGGATGGA
70191213 ATATTGATGT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
35 4 0.08
36 46 0.87
37 3 0.06
ACGTcount: A:0.19, C:0.11, G:0.30, T:0.40
Consensus pattern (37 bp):
GAAGCATCTGGTGTGTTTTGGATGGATTAGCTCTTAT
Found at i:70201207 original size:41 final size:42
Alignment explanation
Indices: 70201104--70201195 Score: 168
Period size: 42 Copynumber: 2.2 Consensus size: 42
70201094 GTAGACACAC
*
70201104 GGGCATGTGTCTAGGCCATGTCTGACACACGGCCTGTCCCAT
1 GGGCATGTGTCTAGGCCGTGTCTGACACACGGCCTGTCCCAT
70201146 GGGCATGTGTCTAGGCCGTGTCTGACACACGG-CTGTCCCAT
1 GGGCATGTGTCTAGGCCGTGTCTGACACACGGCCTGTCCCAT
70201187 GGGCATGTG
1 GGGCATGTG
70201196 CTTTGGTCGT
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 18 0.37
42 31 0.63
ACGTcount: A:0.15, C:0.28, G:0.33, T:0.24
Consensus pattern (42 bp):
GGGCATGTGTCTAGGCCGTGTCTGACACACGGCCTGTCCCAT
Found at i:70203565 original size:8 final size:8
Alignment explanation
Indices: 70203552--70203581 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
70203542 AACTTCCTTT
70203552 TTTTTTTC
1 TTTTTTTC
70203560 -TTTTTTC
1 TTTTTTTC
70203567 TTTTTTTC
1 TTTTTTTC
70203575 TTTTTTT
1 TTTTTTT
70203582 GAATAAGACT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.33
8 14 0.67
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (8 bp):
TTTTTTTC
Found at i:70203572 original size:15 final size:15
Alignment explanation
Indices: 70203552--70203580 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
70203542 AACTTCCTTT
70203552 TTTTTTTCTTTTTTC
1 TTTTTTTCTTTTTTC
70203567 TTTTTTTCTTTTTT
1 TTTTTTTCTTTTTT
70203581 TGAATAAGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (15 bp):
TTTTTTTCTTTTTTC
Found at i:70205222 original size:45 final size:45
Alignment explanation
Indices: 70205158--70205400 Score: 218
Period size: 45 Copynumber: 5.4 Consensus size: 45
70205148 CTACAGGTGC
* * * * * *
70205158 AGGAAACGAGAAGTTTCCATGAAGCCGGAAACAGGCTATGGATAA
1 AGGAAACAAGAAGTTTCCTTGATGCCAGAAACAGGATATGGATAT
* * * * *
70205203 AGGAAACAAGAAGTTTCCATGGA-GCCGGAAACATGCTATGGATAC
1 AGGAAACAAGAAGTTTCC-TTGATGCCAGAAACAGGATATGGATAT
* * * * * *
70205248 AGGGAACAAGGAGTTTCCTTGGTGCCATAAACAGGATGTAGATAT
1 AGGAAACAAGAAGTTTCCTTGATGCCAGAAACAGGATATGGATAT
* * * *
70205293 AGGAAACAAGAAGTTTCGTTGATGCTAGCAACAGGATATAGATAT
1 AGGAAACAAGAAGTTTCCTTGATGCCAGAAACAGGATATGGATAT
* * * * * *
70205338 AGGAAATACGAAGTTTCCTTGATGCTAGCAACAGGATATGGACAG
1 AGGAAACAAGAAGTTTCCTTGATGCCAGAAACAGGATATGGATAT
*
70205383 AGGAAACAAGATGTTTCC
1 AGGAAACAAGAAGTTTCC
70205401 CTAATGCAGG
Statistics
Matches: 163, Mismatches: 33, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
44 2 0.01
45 159 0.98
46 2 0.01
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.21
Consensus pattern (45 bp):
AGGAAACAAGAAGTTTCCTTGATGCCAGAAACAGGATATGGATAT
Found at i:70210847 original size:24 final size:24
Alignment explanation
Indices: 70210819--70210918 Score: 95
Period size: 24 Copynumber: 4.4 Consensus size: 24
70210809 TTACAAAGAC
70210819 ATGAAAGGTGAAGAGTTAAAGAAA
1 ATGAAAGGTGAAGAGTTAAAGAAA
* * *
70210843 ATGAAATGTGAAAAGTTAAAGAAG
1 ATGAAAGGTGAAGAGTTAAAGAAA
* *
70210867 ATGAAAGATGAA-AGGT-AAG---
1 ATGAAAGGTGAAGAGTTAAAGAAA
*
70210886 ATGAAAGGTGGAAG-GTTAAGGAAA
1 ATGAAAGGT-GAAGAGTTAAAGAAA
70210910 ATGAAAGGT
1 ATGAAAGGT
70210919 AAAAGGTTGA
Statistics
Matches: 61, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
19 8 0.13
20 5 0.08
21 2 0.03
22 3 0.05
23 3 0.05
24 40 0.66
ACGTcount: A:0.51, C:0.00, G:0.31, T:0.18
Consensus pattern (24 bp):
ATGAAAGGTGAAGAGTTAAAGAAA
Found at i:70210888 original size:19 final size:19
Alignment explanation
Indices: 70210864--70210920 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
70210854 AAAGTTAAAG
70210864 AAGATGAAAGATGAAAGGT
1 AAGATGAAAGATGAAAGGT
* *
70210883 AAGATGAAAGGTGGAAGGTT
1 AAGATGAAAGATGAAAGG-T
70210903 AAG--GAAA-ATGAAAGGT
1 AAGATGAAAGATGAAAGGT
70210919 AA
1 AA
70210921 AAGGTTGAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
16 3 0.09
17 6 0.18
18 4 0.12
19 16 0.48
20 4 0.12
ACGTcount: A:0.51, C:0.00, G:0.33, T:0.16
Consensus pattern (19 bp):
AAGATGAAAGATGAAAGGT
Found at i:70210890 original size:43 final size:43
Alignment explanation
Indices: 70210843--70210925 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
70210833 GTTAAAGAAA
* * *
70210843 ATGAAATGTGAAAAGTTAAAGAAGATGAAAGATGAAAGGTAAG
1 ATGAAAGGTGAAAAGTTAAAGAAAATGAAAGATAAAAGGTAAG
* * * *
70210886 ATGAAAGGTGGAAGGTTAAGGAAAATGAAAGGTAAAAGGT
1 ATGAAAGGTGAAAAGTTAAAGAAAATGAAAGATAAAAGGT
70210926 TGAACATTCA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.31, T:0.18
Consensus pattern (43 bp):
ATGAAAGGTGAAAAGTTAAAGAAAATGAAAGATAAAAGGTAAG
Found at i:70225162 original size:12 final size:13
Alignment explanation
Indices: 70225132--70225160 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
70225122 ATCCCACCCC
70225132 AAAATAGATACAA
1 AAAATAGATACAA
70225145 AAAATAGATACAA
1 AAAATAGATACAA
70225158 AAA
1 AAA
70225161 TAACAGATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.72, C:0.07, G:0.07, T:0.14
Consensus pattern (13 bp):
AAAATAGATACAA
Found at i:70226987 original size:42 final size:43
Alignment explanation
Indices: 70226935--70227052 Score: 186
Period size: 42 Copynumber: 2.8 Consensus size: 43
70226925 TTAGGGTTAC
*
70226935 TGAGATTACGTGTAAGACCATATCTGGGATATGGA-ATCTATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGACATCAATA
*
70226977 TGAGACTACGTGTAAGACCATATCTGGGATAT-GACATCAATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGACATCAATA
* *
70227019 TGAGATTACATGTAATACCATATCTGGGATATGG
1 TGAGATTACGTGTAAGACCATATCTGGGATATGG
70227053 CATTGGTACA
Statistics
Matches: 69, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
41 2 0.03
42 66 0.96
43 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.30
Consensus pattern (43 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGGACATCAATA
Found at i:70230257 original size:42 final size:42
Alignment explanation
Indices: 70230201--70230291 Score: 112
Period size: 42 Copynumber: 2.2 Consensus size: 42
70230191 GCCCAGCTAC
* *
70230201 GGTCTTACACGATGT-TTTATATCGATGCCATGTACCAGACAT
1 GGTCTTACACGATGTCTCT-TATCGATGCCATGTACCAGAAAT
* * * *
70230243 GGTCTTACATGATGTCTCTTATCGATGCCGTGTCCCATAAAT
1 GGTCTTACACGATGTCTCTTATCGATGCCATGTACCAGAAAT
70230285 GGTCTTA
1 GGTCTTA
70230292 TACAAAATCA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 40 0.95
43 2 0.05
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (42 bp):
GGTCTTACACGATGTCTCTTATCGATGCCATGTACCAGAAAT
Found at i:70247645 original size:26 final size:26
Alignment explanation
Indices: 70247615--70247692 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
70247605 CAGAAAATTA
*
70247615 ACAATAATGCACTGAAATGCATAATC
1 ACAATAATGCACCGAAATGCATAATC
* *
70247641 ACAATATTGCACCGAAGTGCATAATC
1 ACAATAATGCACCGAAATGCATAATC
* *
70247667 ATAAT-ATCGCACCGAAGTGC-TAATC
1 ACAATAAT-GCACCGAAATGCATAATC
70247692 A
1 A
70247693 TATCTTATTA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
25 7 0.15
26 39 0.85
ACGTcount: A:0.41, C:0.22, G:0.14, T:0.23
Consensus pattern (26 bp):
ACAATAATGCACCGAAATGCATAATC
Found at i:70266458 original size:24 final size:24
Alignment explanation
Indices: 70266426--70266475 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
70266416 GTAGAGGCAC
70266426 GGCCGTGTGTCTCAACCGTGTAGA
1 GGCCGTGTGTCTCAACCGTGTAGA
*
70266450 GGCCGTGTGTCTCAACCGTGTGGA
1 GGCCGTGTGTCTCAACCGTGTAGA
70266474 GG
1 GG
70266476 ACACGGCCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.14, C:0.24, G:0.38, T:0.24
Consensus pattern (24 bp):
GGCCGTGTGTCTCAACCGTGTAGA
Found at i:70268864 original size:27 final size:27
Alignment explanation
Indices: 70268824--70268893 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
70268814 NNNNACTATG
* *
70268824 TAGCACTAAGTGTGCGATTTGATTACG
1 TAGCACTAAGTGTGCGAGTTGATTACA
* *
70268851 TGGCACTAAGTGTGCGAGTTGATTATA
1 TAGCACTAAGTGTGCGAGTTGATTACA
*
70268878 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
70268894 GGCTCAATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.31
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGAGTTGATTACA
Found at i:70276784 original size:54 final size:55
Alignment explanation
Indices: 70276716--70276852 Score: 152
Period size: 54 Copynumber: 2.5 Consensus size: 55
70276706 TAAATTGTAC
* * *
70276716 AGCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGA-AATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGAATGAATATGT
* * * ** *
70276769 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTGACTATGT
1 A-GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGAATGAATATGT
*
70276825 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
70276853 AGCNNNNNNN
Statistics
Matches: 67, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
53 1 0.01
54 36 0.54
55 22 0.33
56 8 0.12
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGAATGAATATGT
Found at i:70276830 original size:28 final size:27
Alignment explanation
Indices: 70276716--70276855 Score: 138
Period size: 27 Copynumber: 5.1 Consensus size: 27
70276706 TAAATTGTAC
*
70276716 AGCACTAAGGGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * ** *
70276743 TGCACTCAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70276769 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
70276797 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
70276825 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
70276853 AGC
1 AGC
70276856 NNNNNNNNNN
Statistics
Matches: 91, Mismatches: 19, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
27 56 0.62
28 35 0.38
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:70282042 original size:40 final size:40
Alignment explanation
Indices: 70281985--70282194 Score: 230
Period size: 40 Copynumber: 5.3 Consensus size: 40
70281975 CTAACGGGGT
* * *
70281985 TAAGTCCCGAAGACATTTGTGCTAGTGATTA-ATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGGGC
*
70282025 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGGGC
* *
70282065 TAAGTCCCAAAGGCATTTGTGCGAGTTACTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
* * * *
70282105 TAAGTCCTGAAGGCATTTGTGCTACTGACCATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
* * * **
70282145 TAAGACCCGATGGC-CTTGTGCGAGTGGTTATATCC-GGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
*
70282183 TAAATCCCGAAG
1 TAAGTCCCGAAG
70282195 ATAATTGGGT
Statistics
Matches: 146, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
38 12 0.08
39 15 0.10
40 118 0.81
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
Found at i:70285642 original size:47 final size:47
Alignment explanation
Indices: 70285564--70285976 Score: 727
Period size: 47 Copynumber: 8.7 Consensus size: 47
70285554 CCCTTCGGGA
* * * * * *
70285564 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70285611 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70285658 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70285705 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70285752 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70285799 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70285846 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70285893 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70285942 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
70285977 AGAATCCTAA
Statistics
Matches: 352, Mismatches: 12, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 306 0.87
49 46 0.13
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70287138 original size:18 final size:18
Alignment explanation
Indices: 70287115--70287156 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
70287105 CATATGCATT
70287115 TTTAATCACATCAAGCAA
1 TTTAATCACATCAAGCAA
70287133 TTTAATCACATCAAGCAA
1 TTTAATCACATCAAGCAA
70287151 TTTAAT
1 TTTAAT
70287157 ACAATTCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.43, C:0.19, G:0.05, T:0.33
Consensus pattern (18 bp):
TTTAATCACATCAAGCAA
Found at i:70289231 original size:40 final size:40
Alignment explanation
Indices: 70289199--70289510 Score: 498
Period size: 40 Copynumber: 7.8 Consensus size: 40
70289189 CCAGCATGAT
* * * *
70289199 TGCTCTTCGAGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
70289239 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
70289279 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
70289319 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
70289359 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
70289399 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
70289439 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
70289479 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
70289511 CTCAATTCTC
Statistics
Matches: 248, Mismatches: 24, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 248 1.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:70290776 original size:37 final size:37
Alignment explanation
Indices: 70290726--70290804 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
70290716 TTATTACAAA
* * *
70290726 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
70290763 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
70290800 GTCTT
1 GTCTT
70290805 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:70291001 original size:47 final size:47
Alignment explanation
Indices: 70290923--70291286 Score: 622
Period size: 47 Copynumber: 7.7 Consensus size: 47
70290913 CCCTTCGGGA
* * * *
70290923 CTTATCACATTTATACACTTTCACATCCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
70290970 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
70291017 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
70291064 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
70291111 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
70291158 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
70291205 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
70291252 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
70291287 AGAATCCTAA
Statistics
Matches: 305, Mismatches: 11, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
46 1 0.00
47 304 1.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:70302386 original size:20 final size:20
Alignment explanation
Indices: 70302356--70302401 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
70302346 GATAATGTTA
70302356 AAGTTGGGAAAAACTATGGT
1 AAGTTGGGAAAAACTATGGT
* * *
70302376 ATGTTGTGAAAGACTATGGT
1 AAGTTGGGAAAAACTATGGT
70302396 AAGTTG
1 AAGTTG
70302402 CAAGTTGTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.35, C:0.04, G:0.30, T:0.30
Consensus pattern (20 bp):
AAGTTGGGAAAAACTATGGT
Found at i:70314696 original size:40 final size:40
Alignment explanation
Indices: 70314637--70314865 Score: 379
Period size: 40 Copynumber: 5.7 Consensus size: 40
70314627 TATTCGGATG
* *
70314637 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
70314677 A-AATCCGGGCTAAGTCCCGAAGACACTTGTGCGAGTTACT
1 ATAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
70314717 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
70314757 ATAACCGGGCTAAGTCCTGAAGGCATTTGTACGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
70314797 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
70314837 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
70314866 AGCAAGTAGA
Statistics
Matches: 175, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 2 0.01
40 172 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:70318706 original size:34 final size:33
Alignment explanation
Indices: 70318657--70318725 Score: 102
Period size: 34 Copynumber: 2.1 Consensus size: 33
70318647 TAGAAACCGT
*
70318657 AAAAGTAAAACAATTACTGATCATGAAATATTTG
1 AAAAGTAAAACAATTACCGATCATGAAAT-TTTG
* *
70318691 AAAATTAAAAGAATTACCGATCATGAAATTTTG
1 AAAAGTAAAACAATTACCGATCATGAAATTTTG
70318724 AA
1 AA
70318726 GTAATGTGGG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
33 6 0.19
34 26 0.81
ACGTcount: A:0.51, C:0.09, G:0.12, T:0.29
Consensus pattern (33 bp):
AAAAGTAAAACAATTACCGATCATGAAATTTTG
Found at i:70319073 original size:41 final size:41
Alignment explanation
Indices: 70319028--70319106 Score: 149
Period size: 41 Copynumber: 1.9 Consensus size: 41
70319018 AATGAGTCTG
70319028 TTTTCAAGGAAAATTTACGGCAATTGATTTGGAGTTTCATA
1 TTTTCAAGGAAAATTTACGGCAATTGATTTGGAGTTTCATA
*
70319069 TTTTCAAGGAAAATTTATGGCAATTGATTTGGAGTTTC
1 TTTTCAAGGAAAATTTACGGCAATTGATTTGGAGTTTC
70319107 GTAGCTCTAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (41 bp):
TTTTCAAGGAAAATTTACGGCAATTGATTTGGAGTTTCATA
Found at i:70319773 original size:40 final size:40
Alignment explanation
Indices: 70319718--70319796 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 40
70319708 TTTGATGTGG
*
70319718 AATTGTATCCGGGCTTAAAGACCCACAGGCTTCGTGCTGA
1 AATTGTATCCAGGCTTAAAGACCCACAGGCTTCGTGCTGA
*
70319758 AATTGTATCTAGGCTTAAAGACCCACAGGCTTCGTGCTG
1 AATTGTATCCAGGCTTAAAGACCCACAGGCTTCGTGCTG
70319797 GAATGATATC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (40 bp):
AATTGTATCCAGGCTTAAAGACCCACAGGCTTCGTGCTGA
Found at i:70324617 original size:40 final size:40
Alignment explanation
Indices: 70324524--70324748 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
70324514 GCTCCTCGTT
* * * *
70324524 CAAATGCCTTCGGGACGTAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
70324564 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
70324603 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
70324643 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
70324683 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
70324724 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
70324749 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
39 39 0.25
40 104 0.66
41 15 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:70324757 original size:41 final size:41
Alignment explanation
Indices: 70324680--70324757 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
70324670 TTTGTATCTC
* * *
70324680 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
70324721 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
70324758 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:70325446 original size:115 final size:115
Alignment explanation
Indices: 70325244--70325472 Score: 431
Period size: 115 Copynumber: 2.0 Consensus size: 115
70325234 TCCCCCTTTC
*
70325244 CATCAATTTAACACATGCATTGCTCATTAACATGCAAGGTTACATTCGGCCTTAGCACACAACTT
1 CATCAATTTAACACATGCATTGCTCATTAACATGCAAAGTTACATTCGGCCTTAGCACACAACTT
70325309 GCTAGCCGATTCTTCTCCATTTAGCAACCAATGCACATATGTGCTCACAT
66 GCTAGCCGATTCTTCTCCATTTAGCAACCAATGCACATATGTGCTCACAT
* *
70325359 CATCAATTTAACACATGCATTGCTCATTAACATGCAAAGTTACATTCGGCCTTAGCATACATCTT
1 CATCAATTTAACACATGCATTGCTCATTAACATGCAAAGTTACATTCGGCCTTAGCACACAACTT
70325424 GCTAGCCGATTCTTCTCCATTTAGCAACCAATGCACATATGTGCTCACA
66 GCTAGCCGATTCTTCTCCATTTAGCAACCAATGCACATATGTGCTCACA
70325473 CAAAAATGCT
Statistics
Matches: 111, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
115 111 1.00
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.30
Consensus pattern (115 bp):
CATCAATTTAACACATGCATTGCTCATTAACATGCAAAGTTACATTCGGCCTTAGCACACAACTT
GCTAGCCGATTCTTCTCCATTTAGCAACCAATGCACATATGTGCTCACAT
Found at i:70330536 original size:40 final size:40
Alignment explanation
Indices: 70330477--70330753 Score: 326
Period size: 40 Copynumber: 6.7 Consensus size: 40
70330467 TATTCGGATG
* *
70330477 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
70330517 A-AATCCGGGCTAAGTCCCGAAGACACTTGTGCGAGTTACT
1 ATAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
70330557 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
70330597 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* * * *
70330637 ATATCC-GGCTAAATTTCGAAGGTACTGAAGGCATTTGTACGAGTTACT
1 ATAACCGGGC------T--AA-GTCCCGAAGGCATTTGTGCGAGTTACT
70330685 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
70330725 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
70330754 AGCAAGTAGA
Statistics
Matches: 201, Mismatches: 22, Indels: 28
0.80 0.09 0.11
Matches are distributed among these distances:
39 7 0.03
40 159 0.79
41 3 0.01
43 1 0.00
45 1 0.00
47 2 0.01
48 23 0.11
49 5 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:70330711 original size:128 final size:128
Alignment explanation
Indices: 70330543--70330790 Score: 478
Period size: 128 Copynumber: 1.9 Consensus size: 128
70330533 CCGAAGACAC
* *
70330543 TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCT
1 TTGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCT
70330608 AAGTCCCGAAGGCATTTGAGCAAGTAGATATATCCGGCTAAATTTCGAAGGTACTGAAGGCAT
66 AAGTCCCGAAGGCATTTGAGCAAGTAGATATATCCGGCTAAATTTCGAAGGTACTGAAGGCAT
70330671 TTGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCT
1 TTGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCT
70330736 AAGTCCCGAAGGCATTTGAGCAAGTAGATATATCCGGCTAAATTTCGAAGGTACT
66 AAGTCCCGAAGGCATTTGAGCAAGTAGATATATCCGGCTAAATTTCGAAGGTACT
70330791 TGGTTTGGGA
Statistics
Matches: 118, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
128 118 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (128 bp):
TTGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCT
AAGTCCCGAAGGCATTTGAGCAAGTAGATATATCCGGCTAAATTTCGAAGGTACTGAAGGCAT
Found at i:70335585 original size:40 final size:40
Alignment explanation
Indices: 70335527--70335612 Score: 154
Period size: 40 Copynumber: 2.1 Consensus size: 40
70335517 TTATTTGATG
70335527 TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCTTCATGC
1 TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCTTCATGC
* *
70335567 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCTTCATGC
70335607 TGGAAT
1 TGGAAT
70335613 GACATCCTGG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCTTCATGC
Found at i:70335638 original size:39 final size:40
Alignment explanation
Indices: 70335527--70335639 Score: 140
Period size: 40 Copynumber: 2.9 Consensus size: 40
70335517 TTATTTGATG
* *
70335527 TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCTTCATGC
1 TGGAATTGCATCCGGGCTTAAAGACCCGCAGGCTTCATGC
* *
70335567 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGCATCCGGGCTTAAAGACCCGCAGGCTTCATGC
* * *
70335607 TGGAA-TGACATCCTGG-TTAAAAACCTGCAGGCT
1 TGGAATTG-CATCCGGGCTTAAAGACCCGCAGGCT
70335640 GTGCTAGATA
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 17 0.26
40 49 0.74
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
TGGAATTGCATCCGGGCTTAAAGACCCGCAGGCTTCATGC
Found at i:70340443 original size:27 final size:27
Alignment explanation
Indices: 70340407--70340478 Score: 99
Period size: 27 Copynumber: 2.6 Consensus size: 27
70340397 TTAGTTTACC
70340407 AAATTACCAAAATACCCTCGATTAGCA
1 AAATTACCAAAATACCCTCGATTAGCA
* * * *
70340434 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTAGCA
70340461 AAATTACCAAAAATACCC
1 AAATTACC-AAAATACCC
70340479 CTATAAGGTA
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 31 0.77
28 9 0.22
ACGTcount: A:0.44, C:0.24, G:0.07, T:0.25
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTAGCA
Found at i:70340506 original size:27 final size:27
Alignment explanation
Indices: 70340462--70340687 Score: 299
Period size: 27 Copynumber: 8.3 Consensus size: 27
70340452 TGGTTTGTAA
* * *
70340462 AATTACCAAAAATACCCCTATAAGGTAG
1 AATTACC-GAAATACCCCTGTAGGGTAG
*
70340490 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
70340517 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
70340544 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
70340571 AATTACCAAAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
70340598 AATTACTGAAATACCCGTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
70340625 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
70340652 AAATACTGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
70340679 AATTACCGA
1 AATTACCGA
70340688 GATGCTATTC
Statistics
Matches: 175, Mismatches: 23, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
27 168 0.96
28 7 0.04
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.23
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:70341406 original size:27 final size:26
Alignment explanation
Indices: 70341362--70341412 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
70341352 CTCGCTACAA
*
70341362 TCTGGTGGCCTCGCCACATATATCTAT
1 TCTGGTGACCTCGCCACA-ATATCTAT
* *
70341389 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
70341413 GGTAGCCTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTAT
Found at i:70344528 original size:48 final size:48
Alignment explanation
Indices: 70344450--70344676 Score: 213
Period size: 48 Copynumber: 4.8 Consensus size: 48
70344440 GGGATATGCA
*
70344450 TGATCCCATGTAAGACCATGTCTAGG-ACATGGCATTGGCATCAAAATG
1 TGATCCCATGTAAGACCATGTCT-GGAACATGGCATTGGCATCAATATG
70344498 TGATCCCATGTAAGACCATGTCTGGAACATGGCATTGGCATCAATATG
1 TGATCCCATGTAAGACCATGTCTGGAACATGGCATTGGCATCAATATG
* *** * * * *
70344546 AGA-CATTGTGTAAGACCATAG-CTGG-GC-T---ATCGGCTTCGATATG
1 TGATC-CCATGTAAGACCAT-GTCTGGAACATGGCATTGGCATCAATATG
* *
70344589 CATGATCCAATGTAAGACCATGTCT-GAGACATGGCATTGGCATCGATATG
1 --TGATCCCATGTAAGACCATGTCTGGA-ACATGGCATTGGCATCAATATG
*
70344639 TGATCCCATGTAAGACCATATCTGGGAA-ATGGCATTGG
1 TGATCCCATGTAAGACCATGTCT-GGAACATGGCATTGG
70344677 TATCCTACTA
Statistics
Matches: 146, Mismatches: 18, Indels: 30
0.75 0.09 0.15
Matches are distributed among these distances:
43 12 0.08
44 2 0.01
45 15 0.10
46 3 0.02
47 5 0.03
48 92 0.63
49 2 0.01
50 15 0.10
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (48 bp):
TGATCCCATGTAAGACCATGTCTGGAACATGGCATTGGCATCAATATG
Found at i:70360930 original size:17 final size:17
Alignment explanation
Indices: 70360890--70360933 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
70360880 GGGATAAAAA
70360890 GATTGAAT-T-TG-AAT
1 GATTGAATGTATGAAAT
*
70360904 GA-TGATTGTATGAAAT
1 GATTGAATGTATGAAAT
70360920 GATTGAATGTATGA
1 GATTGAATGTATGA
70360934 GAAAAGTATG
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
13 4 0.17
14 3 0.12
15 2 0.08
16 5 0.21
17 10 0.42
ACGTcount: A:0.36, C:0.00, G:0.25, T:0.39
Consensus pattern (17 bp):
GATTGAATGTATGAAAT
Found at i:70371636 original size:536 final size:536
Alignment explanation
Indices: 70370624--70372239 Score: 3205
Period size: 536 Copynumber: 3.0 Consensus size: 536
70370614 ATTTTGGGGG
*
70370624 TGAGTATGGTTTTCGACTATAAAAGATTAATAAGGGTGATGATTGTGTTTCATGCTAAACTTAGA
1 TGAGTATGGTTTTCGGCTATAAAAGATTAATAAGGGTGATGATTGTGTTTCATGCTAAACTTAGA
70370689 TGAATAATGGTAGTTGCTCACATCTTGATATCTATGAGTTCCTTTCTTGGTTCTACCATAGACCC
66 TGAATAATGGTAGTTGCTCACATCTTGATATCTATGAGTTCCTTTCTTGGTTCTACCATAGACCC
70370754 CCAAAGTATATGTTTATTGGGTGTTGTTGGAGGTTTATGATAGAAGCTAATGAGTGAGAGTTTGA
131 CCAAAGTATATGTTTATTGGGTGTTGTTGGAGGTTTATGATAGAAGCTAATGAGTGAGAGTTTGA
70370819 TAGGTACCATGAGGTTAAACTTCATGAGATTGTAAGCTTGTAAGTTGGATGATGAAATTCATGCT
196 TAGGTACCATGAGGTTAAACTTCATGAGATTGTAAGCTTGTAAGTTGGATGATGAAATTCATGCT
70370884 TTGTGAAGGTAAAAGGAGTAGAAGGAGCATTCGGCCATGAAGAAACAAAAAGAGAGCAAAGGGGG
261 TTGTGAAGGTAAAAGGAGTAGAAGGAGCATTCGGCCATGAAGAAACAAAAAGAGAGCAAAGGGGG
70370949 AAATTTATGATGAATTAAGTGTTAAATGGAATGAAAATGATATTATATGGGGGTATGTATATTCG
326 AAATTTATGATGAATTAAGTGTTAAATGGAATGAAAATGATATTATATGGGGGTATGTATATTCG
70371014 ACCATATGAGTAAATATATAGATGATGTTAAATTTTATTATGTATAATGGGCATTAAGATGTGGA
391 ACCATATGAGTAAATATATAGATGATGTTAAATTTTATTATGTATAATGGGCATTAAGATGTGGA
70371079 ACATAAGAAATGTAGTATATGTGGATCTACATGATGTTATAGTTGACATTGTGCATATACACATG
456 ACATAAGAAATGTAGTATATGTGGATCTACATGATGTTATAGTTGACATTGTGCATATACACATG
70371144 CATTCGGCCATCTAAT
521 CATTCGGCCATCTAAT
70371160 TGAGTATGGTTTTCGGCTATAAAAGATTAATAAGGGTGATGATTGTGTTTCATGCTAAACTTAGA
1 TGAGTATGGTTTTCGGCTATAAAAGATTAATAAGGGTGATGATTGTGTTTCATGCTAAACTTAGA
70371225 TGAATAATGGTAGTTGCTCACATCTTGATATCTATGAGTTCCTTTCTTGGTTCTACCATAGACCC
66 TGAATAATGGTAGTTGCTCACATCTTGATATCTATGAGTTCCTTTCTTGGTTCTACCATAGACCC
70371290 CCAAAGTATATGTTTATTGGGTGTTGTTGGAGGTTTATGATAGAAGCTAATGAGTGAGAGTTTGA
131 CCAAAGTATATGTTTATTGGGTGTTGTTGGAGGTTTATGATAGAAGCTAATGAGTGAGAGTTTGA
70371355 TAGGTACCATGAGGTTAAACTTCATGAGATTGTAAGCTTGTAAGTTGGATGATGAAATTCATGCT
196 TAGGTACCATGAGGTTAAACTTCATGAGATTGTAAGCTTGTAAGTTGGATGATGAAATTCATGCT
*
70371420 TTGTGAAGGTAAAAGGAGTAGAAGGAGCATTCGGCCATGAAGAAAAAAAAAGAGAGCAAAGGGGG
261 TTGTGAAGGTAAAAGGAGTAGAAGGAGCATTCGGCCATGAAGAAACAAAAAGAGAGCAAAGGGGG
70371485 AAATTTATGATGAATTAAGTGTTAAATGGAATGAAAATGATATTATATGGGGGTATGTATATTCG
326 AAATTTATGATGAATTAAGTGTTAAATGGAATGAAAATGATATTATATGGGGGTATGTATATTCG
70371550 ACCATATGAGTAAATATATAGATGATGTTAAATTTTATTATGTATAATGGGCATTAAGATGTGGA
391 ACCATATGAGTAAATATATAGATGATGTTAAATTTTATTATGTATAATGGGCATTAAGATGTGGA
70371615 ACATAAGAAATGTAGTATATGTGGATCTACATGATGTTATAGTTGACATTGTGCATATACACATG
456 ACATAAGAAATGTAGTATATGTGGATCTACATGATGTTATAGTTGACATTGTGCATATACACATG
70371680 CATTCGGCCATCTAAT
521 CATTCGGCCATCTAAT
70371696 TGAGTATGGTTTTCGGCTATAAAAGATTAATAAGGGTGATGATTGTGTTTCATGCTAAACTTAGA
1 TGAGTATGGTTTTCGGCTATAAAAGATTAATAAGGGTGATGATTGTGTTTCATGCTAAACTTAGA
70371761 TGAATAATGGTAGTTGCTCACATCTTGATATCTATGAGTTCCTTTCTTGGTTCTACCATAGACCC
66 TGAATAATGGTAGTTGCTCACATCTTGATATCTATGAGTTCCTTTCTTGGTTCTACCATAGACCC
70371826 CCAAAGTATATGTTTATTGGGTGTTGTTGGAGGTTTATGATAGAAGCTAATGAGTGAGAGTTTGA
131 CCAAAGTATATGTTTATTGGGTGTTGTTGGAGGTTTATGATAGAAGCTAATGAGTGAGAGTTTGA
*
70371891 TAGGTACCATGAGGTTAAACTTCATGAGATTGTAATCTTGTAAGTTGGATGATGAAATTCATGCT
196 TAGGTACCATGAGGTTAAACTTCATGAGATTGTAAGCTTGTAAGTTGGATGATGAAATTCATGCT
70371956 TTGTGAAGGTAAAAGGAGTAGAAGGAGCATTCGGCCATGAAGAAACAAAAAGAGAGCAAAGGGGG
261 TTGTGAAGGTAAAAGGAGTAGAAGGAGCATTCGGCCATGAAGAAACAAAAAGAGAGCAAAGGGGG
70372021 AAATTTATGATGAATTAAGTGTTAAATGGAATGAAAATGATATTATATGGGGGTATGTATATTCG
326 AAATTTATGATGAATTAAGTGTTAAATGGAATGAAAATGATATTATATGGGGGTATGTATATTCG
70372086 ACCATATGAGTAAATATATAGATGATGTTAAATTTTATTATGTATAATGGGCATTAAGATGTGGA
391 ACCATATGAGTAAATATATAGATGATGTTAAATTTTATTATGTATAATGGGCATTAAGATGTGGA
70372151 ACATAAGAAATGTAGTATATGTGGATCTACATGATGTTATAGTTGACATTGTGCATATACACATG
456 ACATAAGAAATGTAGTATATGTGGATCTACATGATGTTATAGTTGACATTGTGCATATACACATG
70372216 CATTCGGCCATCTAAT
521 CATTCGGCCATCTAAT
70372232 TGAGTATG
1 TGAGTATG
70372240 AAGGTGGTGT
Statistics
Matches: 1076, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
536 1076 1.00
ACGTcount: A:0.33, C:0.09, G:0.24, T:0.33
Consensus pattern (536 bp):
TGAGTATGGTTTTCGGCTATAAAAGATTAATAAGGGTGATGATTGTGTTTCATGCTAAACTTAGA
TGAATAATGGTAGTTGCTCACATCTTGATATCTATGAGTTCCTTTCTTGGTTCTACCATAGACCC
CCAAAGTATATGTTTATTGGGTGTTGTTGGAGGTTTATGATAGAAGCTAATGAGTGAGAGTTTGA
TAGGTACCATGAGGTTAAACTTCATGAGATTGTAAGCTTGTAAGTTGGATGATGAAATTCATGCT
TTGTGAAGGTAAAAGGAGTAGAAGGAGCATTCGGCCATGAAGAAACAAAAAGAGAGCAAAGGGGG
AAATTTATGATGAATTAAGTGTTAAATGGAATGAAAATGATATTATATGGGGGTATGTATATTCG
ACCATATGAGTAAATATATAGATGATGTTAAATTTTATTATGTATAATGGGCATTAAGATGTGGA
ACATAAGAAATGTAGTATATGTGGATCTACATGATGTTATAGTTGACATTGTGCATATACACATG
CATTCGGCCATCTAAT
Found at i:70372297 original size:12 final size:12
Alignment explanation
Indices: 70372280--70372306 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
70372270 ATTCCGAAGT
70372280 ATATATATATAC
1 ATATATATATAC
70372292 ATATATATATAC
1 ATATATATATAC
70372304 ATA
1 ATA
70372307 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:70372820 original size:27 final size:27
Alignment explanation
Indices: 70372789--70373019 Score: 220
Period size: 27 Copynumber: 8.6 Consensus size: 27
70372779 TAAATTGTAC
70372789 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
70372816 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70372842 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
70372870 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
70372898 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
70372925 AGCACTAGGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
70372952 AGCACTGAGTGTGCG----GACTCAATCGT
1 AGCACTAAGTGTGCGATTTGACT--AT-GT
* * *
70372978 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
70373005 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70373020 GACTCAATAT
Statistics
Matches: 169, Mismatches: 25, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
23 3 0.02
25 2 0.01
26 15 0.09
27 121 0.72
28 25 0.15
30 3 0.02
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:70372957 original size:82 final size:82
Alignment explanation
Indices: 70372786--70373019 Score: 246
Period size: 82 Copynumber: 2.9 Consensus size: 82
70372776 GATTAAATTG
* * *
70372786 TACAGCACTAAGTGTGCGA-TTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACT
1 TACAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGATTATGTA-GCACT
*
70372849 AAGTGTGCGAATTGACCA
65 AGGTGTGCGAATTGACCA
* * *
70372867 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTA
1 TACAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGATTATGTAGCACTA
* **
70372932 GGTGTGCGAGTTGATTA
66 GGTGTGCGAATTGACCA
* * ** * * *
70372949 TATAGCACTGAGTGTGCG-GACT--CAATCGTAGCACTAAGTGTGCGAGTTGATTATATAGCACT
1 TACAGCACTAAGTGTGCGAGTTTGACTAT-GTAGCACTAAGTGTGCGAATTGATTATGTAGCACT
70373011 -GAGTGTGCG
65 AG-GTGTGCG
70373020 GACTCAATAT
Statistics
Matches: 130, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
79 4 0.03
80 40 0.31
81 19 0.15
82 66 0.51
83 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (82 bp):
TACAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGATTATGTAGCACTA
GGTGTGCGAATTGACCA
Found at i:70372991 original size:53 final size:52
Alignment explanation
Indices: 70372871--70373027 Score: 208
Period size: 53 Copynumber: 2.9 Consensus size: 52
70372861 TGACCATGCG
* * * * *
70372871 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGC-GATTTGATTATGTA
1 GCACTAAGTGTGCGAG-TTGATTATATAGCACTGAGTGTGCGGA-CTCA--ATGTA
*
70372926 GCACTAGGTGTGCGAGTTGATTATATAGCACTGAGTGTGCGGACTCAATCGTA
1 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCGGACTCAAT-GTA
70372979 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCGGACTCAAT
1 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCGGACTCAAT
70373028 ATACATTCGT
Statistics
Matches: 93, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
52 2 0.02
53 51 0.55
54 23 0.25
55 17 0.18
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (52 bp):
GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCGGACTCAATGTA
Found at i:70373030 original size:27 final size:27
Alignment explanation
Indices: 70372947--70373030 Score: 91
Period size: 27 Copynumber: 3.1 Consensus size: 27
70372937 GCGAGTTGAT
70372947 TATATAGCACTGAGTGTGCGGACTCAA
1 TATATAGCACTGAGTGTGCGGACTCAA
** * * * *
70372974 T-CGTAGCACTAAGTGTGC-GAGTTGAT
1 TATATAGCACTGAGTGTGCGGA-CTCAA
70373000 TATATAGCACTGAGTGTGCGGACTCAA
1 TATATAGCACTGAGTGTGCGGACTCAA
70373027 TATA
1 TATA
70373031 CATTCGTGAA
Statistics
Matches: 42, Mismatches: 12, Indels: 6
0.70 0.20 0.10
Matches are distributed among these distances:
25 2 0.05
26 17 0.40
27 21 0.50
28 2 0.05
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (27 bp):
TATATAGCACTGAGTGTGCGGACTCAA
Found at i:70396969 original size:42 final size:42
Alignment explanation
Indices: 70396900--70397017 Score: 112
Period size: 44 Copynumber: 2.8 Consensus size: 42
70396890 ATTCAGTTTT
* * * *
70396900 GATGCCTCTGTCCCAAACAGGGACTTACACGAAA-TCAAATAC
1 GATGCCTATGTCCCAGACACGGTCTTACACGAAACTCAAAT-C
** *
70396942 GATGCCTATGTCCCAGACATAGTCTTACACATAAATCTCAAATC
1 GATGCCTATGTCCCAGACACGGTCTTACAC-GAAA-CTCAAATC
* * *
70396986 GAGGCCTGTCTCCCAGACACGGTCTTACACGA
1 GATGCCTATGTCCCAGACACGGTCTTACACGA
70397018 TATCTCAGAT
Statistics
Matches: 61, Mismatches: 12, Indels: 5
0.78 0.15 0.06
Matches are distributed among these distances:
42 25 0.41
43 4 0.07
44 26 0.43
45 6 0.10
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (42 bp):
GATGCCTATGTCCCAGACACGGTCTTACACGAAACTCAAATC
Found at i:70401626 original size:16 final size:17
Alignment explanation
Indices: 70401605--70401638 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
70401595 GAATATTATG
70401605 AAATAAA-ACCAAACAA
1 AAATAAACACCAAACAA
*
70401621 AAATAAACATCAAACAA
1 AAATAAACACCAAACAA
70401638 A
1 A
70401639 TGCCATCCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.74, C:0.18, G:0.00, T:0.09
Consensus pattern (17 bp):
AAATAAACACCAAACAA
Found at i:70413187 original size:59 final size:59
Alignment explanation
Indices: 70413095--70413212 Score: 227
Period size: 59 Copynumber: 2.0 Consensus size: 59
70413085 CTATGCGTCG
70413095 AGACAATTAAAGCCACATGAGAAAAATTATCCGACCCATGATCTCGAATAAGCTGCCAT
1 AGACAATTAAAGCCACATGAGAAAAATTATCCGACCCATGATCTCGAATAAGCTGCCAT
*
70413154 AGACAATTAAAGCCACATGAGAAAAATTATCCGACCCATGATCTCGAATTAGCTGCCAT
1 AGACAATTAAAGCCACATGAGAAAAATTATCCGACCCATGATCTCGAATAAGCTGCCAT
70413213 CGTATTCGCT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.40, C:0.24, G:0.15, T:0.21
Consensus pattern (59 bp):
AGACAATTAAAGCCACATGAGAAAAATTATCCGACCCATGATCTCGAATAAGCTGCCAT
Found at i:70416764 original size:40 final size:40
Alignment explanation
Indices: 70416708--70416925 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
70416698 TGGATGATAA
* * *
70416708 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
70416748 TCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
70416788 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
70416828 CCGGGCTAAGTCCTGAAGGCATTTTTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
70416868 CCGGGCTATGTCCCGAAGGTATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
70416908 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
70416926 TACTTGGCTT
Statistics
Matches: 159, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 16 0.10
40 143 0.90
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:70419135 original size:10 final size:10
Alignment explanation
Indices: 70419120--70419153 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
70419110 TTGCATGTTA
70419120 TTTGGTGTGT
1 TTTGGTGTGT
*
70419130 TTTGGTATGT
1 TTTGGTGTGT
70419140 TTTGGTGTGT
1 TTTGGTGTGT
70419150 TTTG
1 TTTG
70419154 AATATGTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.03, C:0.00, G:0.35, T:0.62
Consensus pattern (10 bp):
TTTGGTGTGT
Found at i:70419737 original size:20 final size:20
Alignment explanation
Indices: 70419712--70419756 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
70419702 GCATGGCATG
70419712 GTTTTATTGAAATTTTGGAA
1 GTTTTATTGAAATTTTGGAA
70419732 GTTTTATTGAAATTTTGGAA
1 GTTTTATTGAAATTTTGGAA
70419752 GTTTT
1 GTTTT
70419757 TAAAGGTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.53
Consensus pattern (20 bp):
GTTTTATTGAAATTTTGGAA
Found at i:70422715 original size:29 final size:27
Alignment explanation
Indices: 70422697--70422766 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
70422687 ATATTAAGTC
70422697 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
70422724 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
70422752 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
70422767 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:70422760 original size:28 final size:28
Alignment explanation
Indices: 70422697--70422794 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
70422687 ATATTAAGTC
*
70422697 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
70422724 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
70422752 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
70422781 CGCACACTTAGTGC
1 CGCACACTTAGTGC
70422795 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:70425926 original size:54 final size:54
Alignment explanation
Indices: 70425866--70426173 Score: 255
Period size: 54 Copynumber: 5.7 Consensus size: 54
70425856 TTTTACACTA
* ** **
70425866 CAAGGGTATTTCGATAATTTTACAAATTTGGGGTATTTTACTAATTTTACAAAT
1 CAAGGGTATTTTGATAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAAT
** * * * ** *
70425920 TGAGGGTATTTTGATAATTCTAC-ACTACAAGGGTATTTCAGTAGTTTTACAAAT
1 CAAGGGTATTTTGATAATTTTACAAAT-CAGGGGTATTTTGGTAATTTTACAAAT
*** * * * *
70425974 TGGGGGTATTTTGTTAATTTTGCAAAACAGGAGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGATAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAAT
* * * * * *
70426028 CAAGGGTATTTAGGTAATTCTAC-ACTACAAGGGTATTTTGGTAATTTTAAAAAT
1 CAAGGGTATTTTGATAATTTTACAAAT-CAGGGGTATTTTGGTAATTTTACAAAT
** * *
70426082 CAAGAATATTTTGATAATTTTACAAATTAGGGGTATTTCGGTAATTTTACAAAT
1 CAAGGGTATTTTGATAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAAT
* * * *
70426136 CAAGGGT-TTTCGGTAATTTTGCTAATC-GAGGGTATTTT
1 CAAGGGTATTTTGATAATTTTACAAATCAG-GGGTATTTT
70426174 AGCAATTCTA
Statistics
Matches: 197, Mismatches: 52, Indels: 11
0.76 0.20 0.04
Matches are distributed among these distances:
52 1 0.01
53 26 0.13
54 167 0.85
55 3 0.02
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.41
Consensus pattern (54 bp):
CAAGGGTATTTTGATAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAAT
Found at i:70426140 original size:81 final size:81
Alignment explanation
Indices: 70425866--70426155 Score: 273
Period size: 81 Copynumber: 3.6 Consensus size: 81
70425856 TTTTACACTA
* *** ** * ** *
70425866 CAAGGGTATTTCGATAATTTTACAAATTTGGGGTATTTTACTAATTTTACAAATTGAGGGTATTT
1 CAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTAAAAATCAAGAGTATTT
* *
70425931 TGATAATTCTAC-ACT
66 TGATAATTTTACAAAT
* * *** * * *
70425946 ACAAGGGTATTTCAGTAGTTTTACAAATTGGGGGTATTTTGTTAATTTTGCAAAA-CAGGAGTAT
1 -CAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTT-AAAAATCAAGAGTAT
*
70426010 TTTGGTAATTTTACAAAT
64 TTTGATAATTTTACAAAT
* * * *
70426028 CAAGGGTATTTAGGTAATTCTAC-ACTACAAGGGTATTTTGGTAATTTTAAAAATCAAGAATATT
1 CAAGGGTATTTCGGTAATTTTACAAAT-CAAGGGTATTTTGGTAATTTTAAAAATCAAGAGTATT
70426092 TTGATAATTTTACAAAT
65 TTGATAATTTTACAAAT
* * *
70426109 TAGGGGTATTTCGGTAATTTTACAAATCAAGGGT-TTTCGGTAATTTT
1 CAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTT
70426156 GCTAATCGAG
Statistics
Matches: 170, Mismatches: 34, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
80 18 0.11
81 145 0.85
82 7 0.04
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (81 bp):
CAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTAAAAATCAAGAGTATTT
TGATAATTTTACAAAT
Found at i:70426162 original size:26 final size:27
Alignment explanation
Indices: 70425866--70426172 Score: 226
Period size: 27 Copynumber: 11.4 Consensus size: 27
70425856 TTTTACACTA
*
70425866 CAAGGGTATTTCGATAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
*** ***
70425893 TTGGGGTATTTTACTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
** * * * *
70425920 TGAGGGTATTTTGATAATTCTAC-ACT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* *
70425946 ACAAGGGTATTTCAGTAGTTTTACAAAT
1 -CAAGGGTATTTCGGTAATTTTACAAAT
*** * * * *
70425974 TGGGGGTATTTTGTTAATTTTGCAAAA
1 CAAGGGTATTTCGGTAATTTTACAAAT
*
70426001 C-AGGAGTATTTTGGTAATTTTACAAAT
1 CAAGG-GTATTTCGGTAATTTTACAAAT
* * *
70426028 CAAGGGTATTTAGGTAATTCTAC-ACT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* *
70426054 ACAAGGGTATTTTGGTAATTTTAAAAAT
1 -CAAGGGTATTTCGGTAATTTTACAAAT
** * *
70426082 CAAGAATATTTTGATAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* *
70426109 TAGGGGTATTTCGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* *
70426136 CAAGGGT-TTTCGGTAATTTTGCTAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
*
70426162 CGAGGGTATTT
1 CAAGGGTATTT
70426173 TAGCAATTCT
Statistics
Matches: 217, Mismatches: 56, Indels: 14
0.76 0.20 0.05
Matches are distributed among these distances:
26 29 0.13
27 181 0.83
28 7 0.03
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTACAAAT
Found at i:70426194 original size:27 final size:27
Alignment explanation
Indices: 70426164--70426218 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
70426154 TTGCTAATCG
* * *
70426164 AGGGTATTTTAGCAATTCTACCCTACA
1 AGGGCATTTCAGCAATACTACCCTACA
* *
70426191 AGGGCATTTCAGTAATACTAGCCTACA
1 AGGGCATTTCAGCAATACTACCCTACA
70426218 A
1 A
70426219 ATATGAGATT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (27 bp):
AGGGCATTTCAGCAATACTACCCTACA
Found at i:70430469 original size:42 final size:42
Alignment explanation
Indices: 70430367--70430505 Score: 158
Period size: 44 Copynumber: 3.2 Consensus size: 42
70430357 TGTGTTTTTG
* *
70430367 TGTAAGACCACATCTGGGACATTGGCATTG-ACTTATGATTTACA
1 TGTAAGACCACATCTGGGACGTTGGCATCGTA-TT-TGATTT-CA
*
70430411 TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTTCA
1 TGTAAGACCACATCTGGGACGTTGGCATCGTATTTGATTTCA
* *
70430453 TGTAAGACC-CTATCTGGGACAG-TGACATCGATATTTGATTACA
1 TGTAAGACCAC-ATCTGGGAC-GTTGGCATCG-TATTTGATTTCA
70430496 TGTAAGACCA
1 TGTAAGACCA
70430506 TGTCTAGGAC
Statistics
Matches: 84, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
41 1 0.01
42 26 0.31
43 27 0.32
44 29 0.35
45 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACATCTGGGACGTTGGCATCGTATTTGATTTCA
Found at i:70430488 original size:43 final size:43
Alignment explanation
Indices: 70430367--70430505 Score: 160
Period size: 43 Copynumber: 3.2 Consensus size: 43
70430357 TGTGTTTTTG
* * *
70430367 TGTAAGACCACATCTGGGACATTGGCATTGACT-TATGATTTACA
1 TGTAAGACCACATCTGGGACAGTGGCATCGA-TATTTGATTT-CA
*
70430411 TGTAAGACCACGTCTGGGAC-GTTGGCATCG-TATTTGATTTCA
1 TGTAAGACCACATCTGGGACAG-TGGCATCGATATTTGATTTCA
* *
70430453 TGTAAGACC-CTATCTGGGACAGTGACATCGATATTTGATTACA
1 TGTAAGACCAC-ATCTGGGACAGTGGCATCGATATTTGATTTCA
70430496 TGTAAGACCA
1 TGTAAGACCA
70430506 TGTCTAGGAC
Statistics
Matches: 82, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
41 1 0.01
42 27 0.33
43 28 0.34
44 26 0.32
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACATCTGGGACAGTGGCATCGATATTTGATTTCA
Found at i:70438756 original size:48 final size:48
Alignment explanation
Indices: 70438680--70438775 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 48
70438670 GAGATGTTGC
**
70438680 ATTCTTGAGTTTGAAGGTACGTGGGAACAGTATTTGCCATTGGTTGAA
1 ATTCTTGAGTTTGAAGGTACGTCAGAACAGTATTTGCCATTGGTTGAA
70438728 ATTCTTGAGTTTGAAGGTACGTCAGAACAGTATTTGCCATTGGTTGAA
1 ATTCTTGAGTTTGAAGGTACGTCAGAACAGTATTTGCCATTGGTTGAA
70438776 TTCGTATACA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.26, C:0.11, G:0.27, T:0.35
Consensus pattern (48 bp):
ATTCTTGAGTTTGAAGGTACGTCAGAACAGTATTTGCCATTGGTTGAA
Found at i:70442144 original size:42 final size:42
Alignment explanation
Indices: 70442080--70442202 Score: 160
Period size: 43 Copynumber: 2.9 Consensus size: 42
70442070 CGATATGTGT
*
70442080 TTTCGTGTAAGACCACGTCTAGGACGTTGGCATCGTATTTGA
1 TTTCATGTAAGACCACGTCTAGGACGTTGGCATCGTATTTGA
70442122 TTTCATGTAAGACC-CTGTCTAGGACAG-TGGCATCGATATTTGA
1 TTTCATGTAAGACCAC-GTCTAGGAC-GTTGGCATCG-TATTTGA
* * * *
70442165 TTACATGTAAGACCACATCTGGGACGTTGGCATTGTAT
1 TTTCATGTAAGACCACGTCTAGGACGTTGGCATCGTAT
70442203 GAGCTTTCCG
Statistics
Matches: 71, Mismatches: 5, Indels: 10
0.83 0.06 0.12
Matches are distributed among these distances:
41 1 0.01
42 34 0.48
43 35 0.49
44 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (42 bp):
TTTCATGTAAGACCACGTCTAGGACGTTGGCATCGTATTTGA
Found at i:70444016 original size:58 final size:58
Alignment explanation
Indices: 70443946--70444057 Score: 188
Period size: 58 Copynumber: 1.9 Consensus size: 58
70443936 CGACGACAAA
* * *
70443946 TCAGCTATATATGGCACTTAGTGTGCGAGATTGAGATAGGTTCGGCTATATATGAGCT
1 TCAGCTATATATGGAAATTAGTGTGCGAGATTGAGATAGCTTCGGCTATATATGAGCT
*
70444004 TCAGCTATATATGGAAATTAGTGTGTGAGATTGAGATAGCTTCGGCTATATATG
1 TCAGCTATATATGGAAATTAGTGTGCGAGATTGAGATAGCTTCGGCTATATATG
70444058 GCACTTTGTA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 50 1.00
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.34
Consensus pattern (58 bp):
TCAGCTATATATGGAAATTAGTGTGCGAGATTGAGATAGCTTCGGCTATATATGAGCT
Found at i:70444802 original size:7 final size:7
Alignment explanation
Indices: 70444791--70444830 Score: 71
Period size: 7 Copynumber: 5.7 Consensus size: 7
70444781 ACATTTCTAT
*
70444791 TCATCCT
1 TCATCCC
70444798 TCATCCC
1 TCATCCC
70444805 TCATCCC
1 TCATCCC
70444812 TCATCCC
1 TCATCCC
70444819 TCATCCC
1 TCATCCC
70444826 TCATC
1 TCATC
70444831 ATTCATCATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.15, C:0.53, G:0.00, T:0.33
Consensus pattern (7 bp):
TCATCCC
Found at i:70444836 original size:14 final size:14
Alignment explanation
Indices: 70444791--70444837 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
70444781 ACATTTCTAT
* *
70444791 TCATCCTTCATCCC
1 TCATCCCTCATCAC
*
70444805 TCATCCCTCATCCC
1 TCATCCCTCATCAC
*
70444819 TCATCCCTCATCAT
1 TCATCCCTCATCAC
70444833 TCATC
1 TCATC
70444838 ATTCTCTCCT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.17, C:0.49, G:0.00, T:0.34
Consensus pattern (14 bp):
TCATCCCTCATCAC
Found at i:70444836 original size:21 final size:21
Alignment explanation
Indices: 70444789--70444837 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
70444779 TTACATTTCT
*
70444789 ATTCATCCTTCATCCCTCATC
1 ATTCATCCCTCATCCCTCATC
**
70444810 CCTCATCCCTCATCCCTCATC
1 ATTCATCCCTCATCCCTCATC
70444831 ATTCATC
1 ATTCATC
70444838 ATTCTCTCCT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.18, C:0.47, G:0.00, T:0.35
Consensus pattern (21 bp):
ATTCATCCCTCATCCCTCATC
Found at i:70445865 original size:27 final size:27
Alignment explanation
Indices: 70445827--70445882 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
70445817 GTGACTTAGC
*
70445827 ACAAATGCAATCCCTGATGAGACGATA
1 ACAAATACAATCCCTGATGAGACGATA
70445854 ACAAATACAATCCCTGATGAGACGATA
1 ACAAATACAATCCCTGATGAGACGATA
70445881 AC
1 AC
70445883 TCAATACTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.43, C:0.23, G:0.16, T:0.18
Consensus pattern (27 bp):
ACAAATACAATCCCTGATGAGACGATA
Found at i:70454980 original size:48 final size:48
Alignment explanation
Indices: 70454909--70455380 Score: 387
Period size: 48 Copynumber: 9.8 Consensus size: 48
70454899 GAATTGTCAT
* * * * * * *
70454909 TGCCATGTTCCAAAAATGGTCTTACACTAGCTCACATGTCGAGGTCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGCCGA
* * * * *
70454957 TGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTC-ATTGTCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGA-GGCCGA
* * *
70455005 TGCAATGTCCCAGACATGGTCTTACACTGGCTCTCATGAT-GTGACCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATCGAGGCCGA
* * * * * * **
70455053 TTCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAATACCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGCCGA
* * * *
70455101 TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAAC-ATGACCAA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGA-GGCCGA
* * * * **
70455149 TGCCATGTTCCA-ATTATGGTCTTACACTGGCTCTCATATTGTGGCTAA
1 TGCCATGTCCCAGA-CATGGTCTTACACTGGCTCTCATATCGAGGCCGA
* * * * * * *
70455197 TGCCATGTCCCAAACATGGTCTTACATTAGCACACATATCCATGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGCCGA
* * * * **
70455245 TGCCATCTCCTAGACATGGTCTTACACTGGCTCTCACAACGTCGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGCCGA
* * * * *
70455293 TGCCATGTTCCAAACATGGTCTTACATTGGCTCTCATATCGTA-GTCAA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCG-AGGCCGA
* *
70455341 TGCCATGTCCCAGACATGGTCTTACACTGGCACACATATC
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATC
70455381 ACCCAAATGT
Statistics
Matches: 335, Mismatches: 80, Indels: 18
0.77 0.18 0.04
Matches are distributed among these distances:
47 5 0.01
48 328 0.98
49 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGCCGA
Found at i:70455171 original size:144 final size:141
Alignment explanation
Indices: 70454909--70455381 Score: 563
Period size: 144 Copynumber: 3.3 Consensus size: 141
70454899 GAATTGTCAT
* * * * * * *
70454909 TGCCATGTTCCAAAAATGGTCTTACACTAGCTCACATGTCGAGGTCGATGCCATGTCCCAGACAT
1 TGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGACAT
* * * * * *
70454974 GGTCTTACACTAGCTCTCGTC-TCATTGTCGATGCAATGTCCCAGACATGGTCTTACACTGGCTC
66 GGTCTTACACTGGCTCTC-ACAACA-TGCCGATGCCATGTTCCA-ACATGGTCTTACACTGGCTC
*
70455038 TCATGATGTGACCGA
128 TCAT-ATGTGACCAA
* * *
70455053 TTCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAATACCGATGCCATGTCCCAGACAT
1 TGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGACAT
* *
70455118 GGTCTTACACTGGCTCTCACAACATGACCAATGCCATGTTCCAATTATGGTCTTACACTGGCTCT
66 GGTCTTACACTGGCTCTCACAACATG-CCGATGCCATGTTCCAA-CATGGTCTTACACTGGCTCT
* *
70455183 CATATTGTGGCTAA
129 CATA-TGTGACCAA
* * * *
70455197 TGCCATGTCCCAAACATGGTCTTACATTAGCACACATATCCATGCCGATGCCATCTCCTAGACAT
1 TGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGACAT
* *
70455262 GGTCTTACACTGGCTCTCACAACGTCGCCGATGCCATGTTCCAAACATGGTCTTACATTGGCTCT
66 GGTCTTACACTGGCTCTCACAACAT-GCCGATGCCATGTTCC-AACATGGTCTTACACTGGCTCT
*
70455327 CATATCGT-AGTCAA
129 CATAT-GTGA-CCAA
* *
70455341 TGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCA
1 TGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCA
70455382 CCCAAATGTC
Statistics
Matches: 283, Mismatches: 38, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
143 6 0.02
144 274 0.97
145 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (141 bp):
TGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGACAT
GGTCTTACACTGGCTCTCACAACATGCCGATGCCATGTTCCAACATGGTCTTACACTGGCTCTCA
TATGTGACCAA
Found at i:70465967 original size:46 final size:46
Alignment explanation
Indices: 70465900--70466074 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
70465890 TGTAACCCGC
*
70465900 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
*
70465946 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G--T-GTTCGCAT
* * * * ** *
70465996 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTTGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
* *
70466039 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
70466075 TGCCCAATAT
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 61 0.58
47 26 0.25
48 3 0.03
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
Found at i:70466037 original size:93 final size:92
Alignment explanation
Indices: 70465908--70466078 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 92
70465898 GCCCATAAGT
* ** * *
70465908 GAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCAGACTCAACTCAA
70465973 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGG-TGCCTAGTTACATCTCAC
* *
70466001 GAACTCGGACTCAACTCAACGAGTTTGGACGCTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
70466066 CGAGTTCGGTGCC
66 CGAGCTCGGTGCC
70466079 CAATATCCCA
Statistics
Matches: 70, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
92 4 0.06
93 66 0.94
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGTGCCTAGTTACATCTCAC
Found at i:70468240 original size:21 final size:21
Alignment explanation
Indices: 70468216--70468257 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
70468206 TCATCAGATC
*
70468216 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
70468237 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
70468258 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:70470467 original size:30 final size:30
Alignment explanation
Indices: 70470431--70470491 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
70470421 CATTTAATAC
* *
70470431 AAACTTTGGAAAAATTACATTTTTGTCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
70470461 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
70470491 A
1 A
70470492 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:70472279 original size:49 final size:46
Alignment explanation
Indices: 70471985--70472303 Score: 213
Period size: 47 Copynumber: 6.8 Consensus size: 46
70471975 ATTTCTTATG
* * * *
70471985 TGCCAGTGTAAGATATGTTTGGGACATGCATCGGCCAC-ATTATGA
1 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGA
* ** * *
70472030 GTGCCAGTATAAGACCACATCTGGGACATGGCATCGGCATAGA-GATGA
1 -TGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATGATGA
* *
70472078 GTGCCAGTGTAAGAGATTTCTGGGACATGCATCGGCCTCGATGATGA
1 -TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGA
* * * * * *
70472125 TAGCCAATGTAAGACGTGTCTAGGACACGCATCGG-CTAAGA-GTTG-
1 T-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGATGATGA
* * *
70472170 TGCTAGTGTAAGACATGCCTGGGACATGCATCAG--TACGTAT-ATACGA
1 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CG-ATGAT--GA
* * * *
70472217 GAGCTAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGC
1 -TGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATGATGA
*
70472266 TAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 T-GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
70472304 AACTTATCCC
Statistics
Matches: 214, Mismatches: 41, Indels: 33
0.74 0.14 0.11
Matches are distributed among these distances:
43 3 0.01
44 28 0.13
45 1 0.00
46 30 0.14
47 55 0.26
48 36 0.17
49 48 0.22
50 8 0.04
51 4 0.02
52 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGA
Found at i:70474567 original size:50 final size:49
Alignment explanation
Indices: 70474454--70474583 Score: 179
Period size: 50 Copynumber: 2.6 Consensus size: 49
70474444 CTGGTACGCA
* * * **
70474454 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
* *
70474503 TAGTAGCCTGCACTTAGTACTATACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCCGATACACG
*
70474553 TAGTAGCCTACACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
70474584 TCACAGTTTT
Statistics
Matches: 71, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
49 29 0.41
50 42 0.59
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
Found at i:70474580 original size:28 final size:28
Alignment explanation
Indices: 70474496--70474581 Score: 87
Period size: 28 Copynumber: 3.3 Consensus size: 28
70474486 CAATTATCCG
*
70474496 ATACACGTAGTAGCCTGCACTTAGTACT
1 ATACACGTAGTAGCCTACACTTAGTACT
*
70474524 ATACACGT-G-A-CCTA-AC-CA-T-CT
1 ATACACGTAGTAGCCTACACTTAGTACT
70474545 GATACACGTAGTAGCCTACACTTAGTACT
1 -ATACACGTAGTAGCCTACACTTAGTACT
*
70474574 ACACACGT
1 ATACACGT
70474582 GATCACAGTT
Statistics
Matches: 46, Mismatches: 4, Indels: 16
0.70 0.06 0.24
Matches are distributed among these distances:
21 2 0.04
22 9 0.20
23 2 0.04
24 3 0.07
25 7 0.15
26 3 0.07
27 2 0.04
28 16 0.35
29 2 0.04
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (28 bp):
ATACACGTAGTAGCCTACACTTAGTACT
Found at i:70477961 original size:12 final size:12
Alignment explanation
Indices: 70477944--70477972 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
70477934 GAGAGAAGTT
70477944 GAGTTTGGTATC
1 GAGTTTGGTATC
70477956 GAGTTTGGTATC
1 GAGTTTGGTATC
70477968 GAGTT
1 GAGTT
70477973 AGTTCTTGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.07, G:0.34, T:0.41
Consensus pattern (12 bp):
GAGTTTGGTATC
Found at i:70482167 original size:96 final size:95
Alignment explanation
Indices: 70482001--70482222 Score: 290
Period size: 96 Copynumber: 2.3 Consensus size: 95
70481991 TCTTGTGTGC
* *
70482001 CAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGTGCCAGTATAAGACCATGTCTA
1 CAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTATAAGACCATGTCTA
* *
70482066 GGACATGGCATC-AGCGCAGA-GATGAGT-GT
66 GGACATGGCATCGACCGC-GATGATG-CTAGT
*
70482095 CAGTGTAAGACATGTCTGGGACATGCATCAG-CACGTATATATGAGAGCTAGTATAAGACCATGT
1 CAGTGTAAGACATGTCTGGGACATGCATCAGCCAC--AT-TATGAGAGCCAGTATAAGACCATGT
* *
70482159 CTGGGACATGGCATCGACCTCGATGATGCTAGT
63 CTAGGACATGGCATCGACCGCGATGATGCTAGT
70482192 CAGTGTAAGACCATGTCTGGGACATGGCATC
1 CAGTGTAAGA-CATGTCTGGGACAT-GCATC
70482223 GGCAACTTAT
Statistics
Matches: 113, Mismatches: 7, Indels: 11
0.86 0.05 0.08
Matches are distributed among these distances:
93 3 0.03
94 30 0.27
95 2 0.02
96 40 0.35
97 19 0.17
98 14 0.12
99 5 0.04
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (95 bp):
CAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTATAAGACCATGTCTA
GGACATGGCATCGACCGCGATGATGCTAGT
Found at i:70482201 original size:49 final size:48
Alignment explanation
Indices: 70482001--70482223 Score: 189
Period size: 49 Copynumber: 4.7 Consensus size: 48
70481991 TCTTGTGTGC
* *
70482001 CAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC-ATTATG-AGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACCACGATGATGTAGT
* * *
70482045 GCCAGTATAAGACCATGTCTAGGACATGGCATC-AGCGCAGAGATGA-GT-GT
1 --CAGTGTAAGACCATGTCTGGGACATGGCATCGA-C-CA-CGATGATGTAGT
* * *
70482095 CAGTGTAAGA-CATGTCTGGGACAT-GCATC-AGCACGTAT-ATATGAGAG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACCACG-ATGATGT-AG-T
* *
70482142 CTAGTATAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGCTAGT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGACCACGATGATG-TAGT
70482192 CAGTGTAAGACCATGTCTGGGACATGGCATCG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCG
70482224 GCAACTTATC
Statistics
Matches: 142, Mismatches: 17, Indels: 33
0.74 0.09 0.17
Matches are distributed among these distances:
43 2 0.01
44 5 0.04
46 16 0.11
47 27 0.19
48 23 0.16
49 46 0.32
50 11 0.08
51 11 0.08
52 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGACCACGATGATGTAGT
Found at i:70487229 original size:48 final size:46
Alignment explanation
Indices: 70487088--70487506 Score: 232
Period size: 48 Copynumber: 8.8 Consensus size: 46
70487078 TATCGTTGCC
* * * * * *
70487088 ATGTTCCAAACAGGGTCTTACACTAGCTCACA-AGTCGAGGCTGATGCC
1 ATGTCCCAAACATGGTCTTACACTAGCTCTCATA-T--ATGCCGATGCA
* * * * **
70487136 ATGTCCCATACATGGTCTTACACGAGCTCTCTTCTCAATTTCGATGCA
1 ATGTCCCAAACATGGTCTTACACTAGCTCTCATAT--ATGCCGATGCA
** * * *
70487184 ATAACCCAAACATGGTCTTACACTGGCTCTCATGATGTGGCCGATGCC
1 ATGTCCCAAACATGGTCTTACACTAGCTCTCAT-ATAT-GCCGATGCA
*** * * * *
70487232 ATGTTTGAAACATGGTCTTACACTAGCACACATATCAATGCCAATGCC
1 ATGTCCCAAACATGGTCTTACACTAGCTCTCATAT--ATGCCGATGCA
* * * * *
70487280 ATGTCCTAGACATGGTCTTACGCTAGCTCTTACA-ACATTGCCGATGCC
1 ATGTCCCAAACATGGTCTTACACTAGCTC-T-CATATA-TGCCGATGCA
* * * * *
70487328 ATTTTCCAAACATGGTCTTACATTGGCTCTCATATTGTGGCCGATG-A
1 ATGTCCCAAACATGGTCTTACACTAGCTCTCATA-TAT-GCCGATGCA
* * *
70487375 TATGTCCCAAACATGGTCTTACACTAGCACACATATCAATGCCGATACA
1 -ATGTCCCAAACATGGTCTTACACTAGCTCTCATAT--ATGCCGATGCA
* * * * * *
70487424 ATATCCCAGACATGGTCTTACACTGGCTCTCACAACATTGCCGATGCC
1 ATGTCCCAAACATGGTCTTACACTAGCTCTCA-TATA-TGCCGATGCA
* * *
70487472 ATGTTCCAAACATGTTTTTACACTAGCTCTCATAT
1 ATGTCCCAAACATGGTCTTACACTAGCTCTCATAT
70487507 CGTGGTCAAT
Statistics
Matches: 276, Mismatches: 78, Indels: 35
0.71 0.20 0.09
Matches are distributed among these distances:
46 2 0.01
47 10 0.04
48 256 0.93
49 6 0.02
50 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (46 bp):
ATGTCCCAAACATGGTCTTACACTAGCTCTCATATATGCCGATGCA
Found at i:70487344 original size:144 final size:143
Alignment explanation
Indices: 70487189--70487556 Score: 493
Period size: 144 Copynumber: 2.6 Consensus size: 143
70487179 ATGCAATAAC
***
70487189 CCAAACATGGTCTTACACTGGCTCTCATGATGTGGCCGATGCCATGTTTGAAACATGGTCTTACA
1 CCAAACATGGTCTTACACTGGCTCTCAT-ATGTGGCCGATGCCATGTCCCAAACATGGTCTTACA
* * * * * *
70487254 CTAGCACACATATCAATGCCAATGCCATGTCCTAGACATGGTCTTACGCTAGCTCTTACAACATT
65 CTAGCACACATATCAATGCCAATACAATATCCCAGACATGGTCTTACACTAGCTCTCACAACATT
*
70487319 GCCGATGCCATTTT
130 GCCGATGCCATGTT
* **
70487333 CCAAACATGGTCTTACATTGGCTCTCATATTGTGGCCGATGATATGTCCCAAACATGGTCTTACA
1 CCAAACATGGTCTTACACTGGCTCTCATA-TGTGGCCGATGCCATGTCCCAAACATGGTCTTACA
* *
70487398 CTAGCACACATATCAATGCCGATACAATATCCCAGACATGGTCTTACACTGGCTCTCACAACATT
65 CTAGCACACATATCAATGCCAATACAATATCCCAGACATGGTCTTACACTAGCTCTCACAACATT
70487463 GCCGATGCCATGTT
130 GCCGATGCCATGTT
* * * * * ** *
70487477 CCAAACATGTTTTTACACTAGCTCTCATATCGTGGTCAATGCCATGTCCCAGGCATGATCTTACA
1 CCAAACATGGTCTTACACTGGCTCTCATAT-GTGGCCGATGCCATGTCCCAAACATGGTCTTACA
*
70487542 CTGGCACACATATCA
65 CTAGCACACATATCA
70487557 CCCAAATTTC
Statistics
Matches: 195, Mismatches: 27, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
143 2 0.01
144 193 0.99
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.29
Consensus pattern (143 bp):
CCAAACATGGTCTTACACTGGCTCTCATATGTGGCCGATGCCATGTCCCAAACATGGTCTTACAC
TAGCACACATATCAATGCCAATACAATATCCCAGACATGGTCTTACACTAGCTCTCACAACATTG
CCGATGCCATGTT
Found at i:70490859 original size:7 final size:7
Alignment explanation
Indices: 70490847--70490908 Score: 124
Period size: 7 Copynumber: 8.9 Consensus size: 7
70490837 CACATTTCTA
70490847 CTCATCC
1 CTCATCC
70490854 CTCATCC
1 CTCATCC
70490861 CTCATCC
1 CTCATCC
70490868 CTCATCC
1 CTCATCC
70490875 CTCATCC
1 CTCATCC
70490882 CTCATCC
1 CTCATCC
70490889 CTCATCC
1 CTCATCC
70490896 CTCATCC
1 CTCATCC
70490903 CTCATC
1 CTCATC
70490909 ATTCATCATT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 55 1.00
ACGTcount: A:0.15, C:0.56, G:0.00, T:0.29
Consensus pattern (7 bp):
CTCATCC
Found at i:70492064 original size:41 final size:41
Alignment explanation
Indices: 70492011--70492121 Score: 136
Period size: 41 Copynumber: 2.7 Consensus size: 41
70492001 GCGATTCGAC
* * *
70492011 ATAGCTTTGGCTATATATGGCACGTAGTGTGCGATATTG-AG
1 ATAGCTTCGGCTATATATGGCACTTAGTGTGCAAT-TTGTAG
*
70492052 ATAGCTTCGGCTATATATAGCACTTAGTGTGCAATTTGTAG
1 ATAGCTTCGGCTATATATGGCACTTAGTGTGCAATTTGTAG
* * *
70492093 -TAGCTTCTGCTATGTACGGCACTTAGTGT
1 ATAGCTTCGGCTATATATGGCACTTAGTGT
70492122 ATGAAATATC
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
40 28 0.46
41 33 0.54
ACGTcount: A:0.23, C:0.15, G:0.25, T:0.36
Consensus pattern (41 bp):
ATAGCTTCGGCTATATATGGCACTTAGTGTGCAATTTGTAG
Found at i:70499488 original size:41 final size:41
Alignment explanation
Indices: 70499443--70499754 Score: 366
Period size: 41 Copynumber: 7.7 Consensus size: 41
70499433 CAACAAATCA
*
70499443 GCTATATATGGCACTTCGTGTGCGAGATTGAGATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCG
* *
70499484 GCTATATATGGCACTTAGTGTGC--GATTCGACATAGCTTCC
1 GCTATATATGGCACTTAGTGTGCGAGATT-GAGATAGCTTCG
* *
70499524 CCTATATATGGCACTTAGTGTGCGAGGTTGAGATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCG
* *
70499565 GCTATATATGGCACTTTGTGTGC-A-ATTCGACATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCGAGATT-GAGATAGCTTCG
* * *
70499605 ACTATATATGGCACTTTGTGTGTGAGATTGAGATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCG
* * *
70499646 ACCATATATGGCA-TTGAGTGTGCGAGATCGAGATAGCTTCG
1 GCTATATATGGCACTT-AGTGTGCGAGATTGAGATAGCTTCG
* * * *
70499687 ACTATATATGGCACTTAGTGTGCGA-TTTGAGATGGCTTCA
1 GCTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCG
* * * *
70499727 GCTATGTACGACACTTAGTGTGGGAGAT
1 GCTATATATGGCACTTAGTGTGCGAGAT
70499755 ATCAAGTATT
Statistics
Matches: 233, Mismatches: 29, Indels: 18
0.83 0.10 0.06
Matches are distributed among these distances:
39 6 0.03
40 98 0.42
41 121 0.52
42 8 0.03
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (41 bp):
GCTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCG
Found at i:70499530 original size:81 final size:81
Alignment explanation
Indices: 70499444--70499748 Score: 416
Period size: 81 Copynumber: 3.8 Consensus size: 81
70499434 AACAAATCAG
*
70499444 CTATATATGGCACTTCGTGTGCGAGATTGAGATAGCTTCGGCTATATATGGCACTTAGTGTGCGA
1 CTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCGGCTATATATGGCACTTAGTGTGCGA
**
70499509 TTCGACATAGCTTCCC
66 TTCGACATAGCTTCGA
* * *
70499525 CTATATATGGCACTTAGTGTGCGAGGTTGAGATAGCTTCGGCTATATATGGCACTTTGTGTGCAA
1 CTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCGGCTATATATGGCACTTAGTGTGCGA
70499590 TTCGACATAGCTTCGA
66 TTCGACATAGCTTCGA
* * * *
70499606 CTATATATGGCACTTTGTGTGTGAGATTGAGATAGCTTCGACCATATATGGCA-TTGAGTGTGCG
1 CTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCGGCTATATATGGCACTT-AGTGTGCG
* *
70499670 AGATCGAGATAGCTTCGA
65 A-TTCGACATAGCTTCGA
* * * * * *
70499688 CTATATATGGCACTTAGTGTGCGA-TTTGAGATGGCTTCAGCTATGTACGACACTTAGTGTG
1 CTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCGGCTATATATGGCACTTAGTGTG
70499749 GGAGATATCA
Statistics
Matches: 196, Mismatches: 25, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
80 2 0.01
81 156 0.80
82 38 0.19
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (81 bp):
CTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCGGCTATATATGGCACTTAGTGTGCGA
TTCGACATAGCTTCGA
Done.