Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 207 of 235
Found at i:70499754 original size:122 final size:121
Alignment explanation
Indices: 70499444--70499754 Score: 369
Period size: 122 Copynumber: 2.5 Consensus size: 121
70499434 AACAAATCAG
* * *
70499444 CTATATATGGCACTTCGTGTGCGAGATTGAGATAGCTTCGGCTATATATGGCACTTAGTGT-GCG
1 CTATATATGGCACTTAGTGTGCGA-TTTGAGATAGCTTC-GCTATATATGGCACTTAGTGTGGAG
* * * *
70499508 ATTCGACATAGCTTCCCCTATATATGGCACTTAGTGTGCGAGGTTGAGATAGCTTCGG
64 ATTCGACATAGCTTCACCTATATATGGCACTTAGTGTGCGAGATCGAGATAGCTTCGA
* * * * *
70499566 CTATATATGGCACTTTGTGTGCAATTCGACATAGCTTCGACTATATATGGCACTTTGTGTGTGAG
1 CTATATATGGCACTTAGTGTGCGATTTGAGATAGCTTCG-CTATATATGGCACTTAGTGTG-GAG
*
70499631 ATT-GAGATAGCTTCGACC-ATATATGGCA-TTGAGTGTGCGAGATCGAGATAGCTTCGA
64 ATTCGACATAGCTTC-ACCTATATATGGCACTT-AGTGTGCGAGATCGAGATAGCTTCGA
* * * *
70499688 CTATATATGGCACTTAGTGTGCGATTTGAGATGGCTTCAGCTATGTACGACACTTAGTGTGGGAG
1 CTATATATGGCACTTAGTGTGCGATTTGAGATAGCTTC-GCTATATATGGCACTTAGTGT-GGAG
70499753 AT
64 AT
70499755 ATCAAGTATT
Statistics
Matches: 161, Mismatches: 21, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
120 1 0.01
121 32 0.20
122 119 0.74
123 9 0.06
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (121 bp):
CTATATATGGCACTTAGTGTGCGATTTGAGATAGCTTCGCTATATATGGCACTTAGTGTGGAGAT
TCGACATAGCTTCACCTATATATGGCACTTAGTGTGCGAGATCGAGATAGCTTCGA
Found at i:70507339 original size:8 final size:8
Alignment explanation
Indices: 70507323--70507369 Score: 67
Period size: 8 Copynumber: 5.9 Consensus size: 8
70507313 ATCGGTAAAA
70507323 GCTGAAAT
1 GCTGAAAT
*
70507331 GCCGAAAT
1 GCTGAAAT
*
70507339 GCTAAAAT
1 GCTGAAAT
*
70507347 GCCGAAAT
1 GCTGAAAT
70507355 GCTGAAAT
1 GCTGAAAT
70507363 GCTGAAA
1 GCTGAAA
70507370 AGCCAAAAGT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 33 1.00
ACGTcount: A:0.40, C:0.17, G:0.23, T:0.19
Consensus pattern (8 bp):
GCTGAAAT
Found at i:70507354 original size:24 final size:23
Alignment explanation
Indices: 70507318--70507373 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 23
70507308 TATGAATCGG
*
70507318 TAAAAGCTGAAATGCCGAAATGC
1 TAAAAGCCGAAATGCCGAAATGC
*
70507341 TAAAATGCCGAAATGCTGAAATGC
1 TAAAA-GCCGAAATGCCGAAATGC
70507365 TGAAAAGCC
1 T-AAAAGCC
70507374 AAAAGTTTGG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 5 0.17
24 20 0.69
25 4 0.14
ACGTcount: A:0.43, C:0.18, G:0.21, T:0.18
Consensus pattern (23 bp):
TAAAAGCCGAAATGCCGAAATGC
Found at i:70507634 original size:29 final size:29
Alignment explanation
Indices: 70507601--70507702 Score: 134
Period size: 29 Copynumber: 3.6 Consensus size: 29
70507591 TGAATGTGAC
*
70507601 TGGGCCTAATGGGCCATATAAATTTGATT
1 TGGGCCTAATGGGCCATATAAATATGATT
* **
70507630 TGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAATATGATT
* *
70507659 TGGGCCTAATGGGCCATATGAATATCA-T
1 TGGGCCTAATGGGCCATATAAATATGATT
*
70507687 TGGGCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
70507703 GATACAGGTA
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
28 16 0.25
29 48 0.75
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.29
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATATGATT
Found at i:70507671 original size:58 final size:57
Alignment explanation
Indices: 70507601--70507711 Score: 168
Period size: 57 Copynumber: 1.9 Consensus size: 57
70507591 TGAATGTGAC
* * *
70507601 TGGGCCTAATGGGCCATATAAATTTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAATATCA-TTGGGCCTAATGGGCCAGATACAGGTGATT
* *
70507659 TGGGCCTAATGGGCCATATGAATATCATTGGGCTTAATGGGCCAGATACAGGT
1 TGGGCCTAATGGGCCATATAAATATCATTGGGCCTAATGGGCCAGATACAGGT
70507712 ATGTGAATTT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 24 0.50
58 24 0.50
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (57 bp):
TGGGCCTAATGGGCCATATAAATATCATTGGGCCTAATGGGCCAGATACAGGTGATT
Found at i:70512125 original size:46 final size:45
Alignment explanation
Indices: 70512058--70512186 Score: 188
Period size: 46 Copynumber: 2.8 Consensus size: 45
70512048 TATTTGGGCA
70512058 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAC
1 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAC
* *
70512103 GTCCGAACTCGTTGAGTTGAGTCGGAGTTCACTTATGGATGCGAAC
1 -TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAC
* *
70512149 ACCTGAGCTCGTTGAGTTGAGT-TCGAGTTCGCTTATGG
1 TCC-GAGCTCGTTGAGTTGAGTCT-GAGTTCACTTATGG
70512187 GCGGGTTACA
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
45 2 0.03
46 73 0.97
ACGTcount: A:0.19, C:0.19, G:0.30, T:0.31
Consensus pattern (45 bp):
TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAC
Found at i:70516504 original size:40 final size:39
Alignment explanation
Indices: 70516467--70516738 Score: 276
Period size: 40 Copynumber: 6.8 Consensus size: 39
70516457 GGATATAGCC
* * *
70516467 ACTAGCTCAAATGCCTTCAGGACTTATCCCGGTTATAGTA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGG-TATAGTA
* *
70516507 ACTTGCACAAATGCCTTCGGGACTTAGCCCGGTATAATA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTATAGTA
* *
70516546 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTA-TAGTA
* * * * *
70516586 GCTCGCACAACTGCCTTCGGGACTTAGCCCAGAATTAGTA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTA-TAGTA
* ** *
70516626 GCCCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTA-TAGTA
* * * **
70516666 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGAATTAGCC
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTA-TAGTA
* *
70516706 ACTACCTCAAATG-CTCTCGGGACTTAGCCCGGT
1 ACTAGCACAAATGCCT-TCGGGACTTAGCCCGGT
70516739 TATCATCCGA
Statistics
Matches: 206, Mismatches: 24, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 40 0.19
40 166 0.81
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (39 bp):
ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTATAGTA
Found at i:70516658 original size:80 final size:80
Alignment explanation
Indices: 70516474--70516737 Score: 338
Period size: 80 Copynumber: 3.3 Consensus size: 80
70516464 GCCACTAGCT
* * * * *
70516474 CAAATGCCTTCAGGACTTATCCCGG-TTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCA
* * *
70516538 GTA-TAATAACTCGCA
65 GAATTAGTAACCCGCA
* *
70516553 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAGCTCGCACAACTGCCTTCGGGACTTAGCCCAG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAG
*
70516618 AATTAGTAGCCCGCA
66 AATTAGTAACCCGCA
70516633 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAG
** * *
70516698 AATTAGCCACTAC-CT
66 AATTAGTAAC-CCGCA
70516713 CAAATG-CTCTCGGGACTTAGCCCGG
1 CAAATGCCT-TCGGGACTTAGCCCGG
70516738 TTATCATCCG
Statistics
Matches: 163, Mismatches: 18, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
79 59 0.36
80 103 0.63
81 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAG
AATTAGTAACCCGCA
Found at i:70516726 original size:120 final size:119
Alignment explanation
Indices: 70516511--70516735 Score: 339
Period size: 120 Copynumber: 1.9 Consensus size: 119
70516501 ATAGTAACTT
*
70516511 GCACAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 GCACAAATGCCTTCGGGACTTAGCCCGGAATAATAACTCGCACAAATGCCTTCGGGACTTAGCCC
* * *
70516576 GGAATTAGTAGCTCGCACAACTGCCTTCGGGACTTAGCCCAGAATTAGTAGCCC
66 AGAATTAGCAGCTCGCACAAATGCCTTCGGGACTTAGCCCAGAATTAGTAGCCC
*
70516630 GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
1 GCACAAATGCCTTCGGGACTTAGCCCGGAA-TAATAACTCGCACAAATGCCTTCGGGACTTAGCC
*
70516695 CAGAATTAGCCA-CTAC-CTCAAATG-CTCTCGGGACTTAGCCC
65 CAGAATTAG-CAGCT-CGCACAAATGCCT-TCGGGACTTAGCCC
70516736 GGTTATCATC
Statistics
Matches: 96, Mismatches: 6, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
119 31 0.32
120 63 0.66
121 2 0.02
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (119 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGAATAATAACTCGCACAAATGCCTTCGGGACTTAGCCC
AGAATTAGCAGCTCGCACAAATGCCTTCGGGACTTAGCCCAGAATTAGTAGCCC
Found at i:70523957 original size:40 final size:39
Alignment explanation
Indices: 70523913--70524097 Score: 239
Period size: 40 Copynumber: 4.7 Consensus size: 39
70523903 GCCACTAGCT
* *
70523913 CAAATGCCTTCGGGACTTATCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
70523953 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* *
70523992 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
* * *
70524032 CAAATGCCTTCGGGACTTAGCCCGGAATTAG-ACACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTA-ACTCGCA
70524072 CAAATG-CTCTCGGGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
70524098 TATCATCCGA
Statistics
Matches: 132, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
39 41 0.31
40 91 0.69
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:70524016 original size:79 final size:80
Alignment explanation
Indices: 70523905--70524100 Score: 263
Period size: 79 Copynumber: 2.5 Consensus size: 80
70523895 CGGATATAGC
* * *
70523905 CACTAGCTCAAATGCCTTCGGGACTTATCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACT
1 CACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACT
* *
70523970 TAGCCCGGTATAATA
66 TAGCCCGGAATAAGA
* * *
70523985 -ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-AATTAGTAGCTCGCACAAATGCCTTCGGGAC
1 CACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGAC
*
70524048 TTAGCCCGGAATTAGA
65 TTAGCCCGGAATAAGA
*
70524064 CACTAGCTCAAATG-CTCTCGGGACTTAGCCCGGTTAT
1 CACTAGCACAAATGCCT-TCGGGACTTAGCCCGGTTAT
70524101 CATCCGAATC
Statistics
Matches: 100, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 70 0.70
80 28 0.28
81 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACT
TAGCCCGGAATAAGA
Found at i:70530911 original size:27 final size:27
Alignment explanation
Indices: 70530880--70531057 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
70530870 TAAATTGTAC
*
70530880 AGCACTAAGTGTGTGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *** *
70530907 TGCACTAAGTGTGCGAAACGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70530933 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
70530961 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
70530989 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70531016 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
70531043 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70531058 GACTCAATAT
Statistics
Matches: 126, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:70531021 original size:82 final size:81
Alignment explanation
Indices: 70530881--70531036 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
70530871 AAATTGTACA
* * *
70530881 GCACTAAGTGTGTGATTTGACTATGTTGCACTAAGTGTGCGAAACGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAAGTGT
70530946 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
*** *
70530962 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGAT-GCACTAAGT
*
70531026 GTGCGAGTTGA
64 GTGCGAATTGA
70531037 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.77
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:70531048 original size:82 final size:81
Alignment explanation
Indices: 70530877--70531057 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
70530867 GATTAAATTG
* * *
70530877 TACAGCACTAAGTGTGTGATTTGACTATGTTGCACTAAGTGTGCGAAACGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAA
70530942 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * *** *
70530958 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGAT-GCACT
* **
70531022 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
70531040 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
70531058 GACTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 17 0.21
82 65 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:70542846 original size:29 final size:29
Alignment explanation
Indices: 70542811--70542909 Score: 137
Period size: 29 Copynumber: 3.4 Consensus size: 29
70542801 ATGTGACTGA
*
70542811 GCCTAATGGGCCGTATAAATGTGATTTGG
1 GCCTAATGGGCCATATAAATGTGATTTGG
* *
70542840 GCCTAATGGGCCATATACAGGTGATTTGG
1 GCCTAATGGGCCATATAAATGTGATTTGG
* *
70542869 GCCTAATGGGCCATATAAATATCA-TTGG
1 GCCTAATGGGCCATATAAATGTGATTTGG
*
70542897 GCTTAATGGGCCA
1 GCCTAATGGGCCA
70542910 GATACAAGTA
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
28 16 0.26
29 46 0.74
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (29 bp):
GCCTAATGGGCCATATAAATGTGATTTGG
Found at i:70550313 original size:30 final size:30
Alignment explanation
Indices: 70550279--70550336 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
70550269 CTGAGCCTAG
70550279 GGGCAAAAGTGTAAATATGCAAAAGTTTAA
1 GGGCAAAAGTGTAAATATGCAAAAGTTTAA
* * *
70550309 GGGCAAAATTGTAATTTTGCAAAAGTTT
1 GGGCAAAAGTGTAAATATGCAAAAGTTT
70550337 GAGTTAAGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.29
Consensus pattern (30 bp):
GGGCAAAAGTGTAAATATGCAAAAGTTTAA
Found at i:70553230 original size:27 final size:26
Alignment explanation
Indices: 70553182--70553241 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
70553172 GCAAGGCTGC
*
70553182 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * * *
70553209 CAGATATTGTGGCTAGGCCACCATAA
1 CAGATATTGTGACGAAGCCACCAGAA
70553235 CAGATAT
1 CAGATAT
70553242 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:70554013 original size:27 final size:27
Alignment explanation
Indices: 70553983--70554074 Score: 139
Period size: 27 Copynumber: 3.4 Consensus size: 27
70553973 AGGGCAAAAT
* * * *
70553983 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
70554010 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
70554037 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
70554064 GGTAATTCTAC
1 GGTAATTCTAC
70554075 AACTTATCCA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:70559622 original size:56 final size:56
Alignment explanation
Indices: 70559524--70559631 Score: 146
Period size: 56 Copynumber: 1.9 Consensus size: 56
70559514 GACCATGGCA
* * *
70559524 TCGATATATGTGTGCGAGTAAGACCATGTTTTATACGTTGGCATCGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCATGTTTGAGACGTTGGCATCAATATGTGATT
* * *
70559580 TCGATGTATGTGTGCGAGTAAGACCCTGTTTGGGACAG-TGGCATCAATATGT
1 TCGATATATGTGTGCGAGTAAGACCATGTTTGAGAC-GTTGGCATCAATATGT
70559632 ATTACATGTA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
56 44 0.98
57 1 0.02
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (56 bp):
TCGATATATGTGTGCGAGTAAGACCATGTTTGAGACGTTGGCATCAATATGTGATT
Found at i:70565363 original size:45 final size:45
Alignment explanation
Indices: 70565314--70565448 Score: 216
Period size: 45 Copynumber: 3.0 Consensus size: 45
70565304 ACGTAACCAT
* *
70565314 ATATATCGATGCCAACGTCCCAGACGTGGTTTTACACGAAATCAC
1 ATATATCGATGCCAATGTCCCAGACGTGGTTTTACATGAAATCAC
* * *
70565359 ATATATCGTTGCCAATGTCCCAAACATGGTTTTACATGAAATCAC
1 ATATATCGATGCCAATGTCCCAGACGTGGTTTTACATGAAATCAC
*
70565404 ATATATCGATGCCAATGTCCCAGACGTGGTCTTACATGAAATCAC
1 ATATATCGATGCCAATGTCCCAGACGTGGTTTTACATGAAATCAC
70565449 TTATTGGAAT
Statistics
Matches: 81, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 81 1.00
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.27
Consensus pattern (45 bp):
ATATATCGATGCCAATGTCCCAGACGTGGTTTTACATGAAATCAC
Found at i:70565413 original size:90 final size:88
Alignment explanation
Indices: 70565230--70565448 Score: 250
Period size: 90 Copynumber: 2.5 Consensus size: 88
70565220 ATGTTATATC
* * * *
70565230 ATATCGATGCC-ACTGTCCCAAACAG-GGTCTTACACG-AATC-GAATACGATGCCGATGTCCGA
1 ATATCGATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAATCACAATACGATGCCAATGTCCCA
* *
70565291 AACATGGTCTTTCACGTAACCATAT
64 AACATGGTCTTTCACGAAACCACAT
* *
70565316 ATATCGATGCCAACGTCCCAGACGTGGTTTTACACGAAATCACATATATCGTTGCCAATGTCCCA
1 ATATCGATGCCAACGTCCCAGACGTGGTCTTACACGAAATCACA-ATA-CGATGCCAATGTCCCA
* *
70565381 AACATGGT-TTTACATGAAATCACAT
64 AACATGGTCTTT-CACGAAACCACAT
* *
70565406 ATATCGATGCCAATGTCCCAGACGTGGTCTTACATGAAATCAC
1 ATATCGATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAC
70565449 TTATTGGAAT
Statistics
Matches: 113, Mismatches: 13, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
85 1 0.01
86 29 0.26
87 6 0.05
88 1 0.01
89 6 0.05
90 70 0.62
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (88 bp):
ATATCGATGCCAACGTCCCAGACGTGGTCTTACACGAAATCACAATACGATGCCAATGTCCCAAA
CATGGTCTTTCACGAAACCACAT
Found at i:70566469 original size:30 final size:30
Alignment explanation
Indices: 70566411--70566471 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
70566401 TTCCCGAGCC
*
70566411 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATACAAAAGTT
* * * *
70566441 TAGGGGCAAAATTGTAATTTTACCAAAGTT
1 TAGGGGCAAAAGTGTAAATATACAAAAGTT
70566471 T
1 T
70566472 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATACAAAAGTT
Found at i:70569787 original size:14 final size:15
Alignment explanation
Indices: 70569770--70569798 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
70569760 GCATGAAAAT
70569770 TTCACACAT-ATAAA
1 TTCACACATAATAAA
70569784 TTCACACATAATAAA
1 TTCACACATAATAAA
70569799 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:70586305 original size:20 final size:20
Alignment explanation
Indices: 70586280--70586319 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
70586270 ATGCCATAGT
70586280 TTCAAAAATTCAACTTATAA
1 TTCAAAAATTCAACTTATAA
*
70586300 TTCAAAAATTCAGCTTATAA
1 TTCAAAAATTCAACTTATAA
70586320 AATACCGAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (20 bp):
TTCAAAAATTCAACTTATAA
Found at i:70587055 original size:45 final size:44
Alignment explanation
Indices: 70587006--70587203 Score: 234
Period size: 45 Copynumber: 4.4 Consensus size: 44
70586996 GTCCTAAACA
* * *
70587006 TGGTCTTACACATAACCATATATATCGATGCCAACGTCCCAAACG
1 TGGTCTTACACA-AATCACATATATCGATGCCAACGTCCCAGACG
* * *
70587051 TGGTCTTACACGAAATAACATATATCGTTGCCAACATCCCAGACG
1 TGGTCTTACAC-AAATCACATATATCGATGCCAACGTCCCAGACG
* *
70587096 TGGTCTTACACAAAATCACATATATCAATGCCAACATCCCAGACG
1 TGGTCTTACAC-AAATCACATATATCGATGCCAACGTCCCAGACG
* * * *
70587141 TGGTCTTACATGAAATCACATATATTGAAGCCAATGTCCCAGACG
1 TGGTCTTACA-CAAATCACATATATCGATGCCAACGTCCCAGACG
*
70587186 TTGTCTTACACGAAATCA
1 TGGTCTTACAC-AAATCA
70587204 GATGTCGAAA
Statistics
Matches: 132, Mismatches: 18, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
45 131 0.99
46 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.25
Consensus pattern (44 bp):
TGGTCTTACACAAATCACATATATCGATGCCAACGTCCCAGACG
Found at i:70587127 original size:90 final size:90
Alignment explanation
Indices: 70587006--70587203 Score: 261
Period size: 90 Copynumber: 2.2 Consensus size: 90
70586996 GTCCTAAACA
* * * * *
70587006 TGGTCTTACACATAACCATATATATCGATGCCAACGTCCCAAACGTGGTCTTACACGAAATAACA
1 TGGTCTTACACAAAATCACATATATCAATGCCAACATCCCAAACGTGGTCTTACACGAAATAACA
**
70587071 TATATCGTTGCCAACATCCCAGACG
66 TATATCGAAGCCAACATCCCAGACG
* * *
70587096 TGGTCTTACACAAAATCACATATATCAATGCCAACATCCCAGACGTGGTCTTACATGAAATCACA
1 TGGTCTTACACAAAATCACATATATCAATGCCAACATCCCAAACGTGGTCTTACACGAAATAACA
* **
70587161 TATATTGAAGCCAATGTCCCAGACG
66 TATATCGAAGCCAACATCCCAGACG
* *
70587186 TTGTCTTACACGAAATCA
1 TGGTCTTACACAAAATCA
70587204 GATGTCGAAA
Statistics
Matches: 93, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
90 93 1.00
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.25
Consensus pattern (90 bp):
TGGTCTTACACAAAATCACATATATCAATGCCAACATCCCAAACGTGGTCTTACACGAAATAACA
TATATCGAAGCCAACATCCCAGACG
Found at i:70588568 original size:42 final size:45
Alignment explanation
Indices: 70588475--70588642 Score: 154
Period size: 45 Copynumber: 3.9 Consensus size: 45
70588465 TTTTATCAAA
* * * *
70588475 TCACCGGCATT-TAGCCTGCTAGGTTTTAAA--CCCTAAT-TCATC
1 TCACCGGCATTATAGCCTGCTAGG-CTCAAAGGCTCGAATATCATC
* * *
70588517 -CACCGGCATT-TCGCCTGCTAGGCTCGAA-GCTCG-ATATCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCTCGAATATCATC
* * *
70588558 TCACCGGCATTATAACCCGCTAGGCTCAAAGGCTCGAATATTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCTCGAATATCATC
* * *
70588603 TCACGGGTATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCTCGAATA
70588643 GTATCGTACG
Statistics
Matches: 102, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
40 5 0.05
41 27 0.26
42 10 0.10
43 14 0.14
44 5 0.05
45 41 0.40
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.27
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCTCGAATATCATC
Found at i:70593475 original size:106 final size:106
Alignment explanation
Indices: 70593290--70593501 Score: 424
Period size: 106 Copynumber: 2.0 Consensus size: 106
70593280 GAGATTTCAA
70593290 TTCTTTTAATTCGGTTGGTGCCATACGATATGGAGATATCGAAATAGGTGTAGTCCCGATACTAG
1 TTCTTTTAATTCGGTTGGTGCCATACGATATGGAGATATCGAAATAGGTGTAGTCCCGATACTAG
70593355 TTCAATACCAAACTGTACCTCCCGAATAGGTGGTAATCTAG
66 TTCAATACCAAACTGTACCTCCCGAATAGGTGGTAATCTAG
70593396 TTCTTTTAATTCGGTTGGTGCCATACGATATGGAGATATCGAAATAGGTGTAGTCCCGATACTAG
1 TTCTTTTAATTCGGTTGGTGCCATACGATATGGAGATATCGAAATAGGTGTAGTCCCGATACTAG
70593461 TTCAATACCAAACTGTACCTCCCGAATAGGTGGTAATCTAG
66 TTCAATACCAAACTGTACCTCCCGAATAGGTGGTAATCTAG
70593502 GTAATTCCCC
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
106 106 1.00
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (106 bp):
TTCTTTTAATTCGGTTGGTGCCATACGATATGGAGATATCGAAATAGGTGTAGTCCCGATACTAG
TTCAATACCAAACTGTACCTCCCGAATAGGTGGTAATCTAG
Found at i:70594715 original size:53 final size:53
Alignment explanation
Indices: 70594652--70594760 Score: 182
Period size: 53 Copynumber: 2.1 Consensus size: 53
70594642 CCCATCCTCG
* *
70594652 AAGCGTTTACACATGATAGCCTCGGACGAAACACATTCCCGAGCGTATCTACT
1 AAGCGTTTACACATGATAGCCTCAGACGAAACACATTCCCGAGCATATCTACT
* *
70594705 AAGCGTTTACACATGATAGCCTTAGACGAAGCACATTCCCGAGCATATCTACT
1 AAGCGTTTACACATGATAGCCTCAGACGAAACACATTCCCGAGCATATCTACT
70594758 AAG
1 AAG
70594761 TCTCACAAAC
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (53 bp):
AAGCGTTTACACATGATAGCCTCAGACGAAACACATTCCCGAGCATATCTACT
Found at i:70595573 original size:41 final size:41
Alignment explanation
Indices: 70595528--70595609 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
70595518 ATGTAACAAC
* *
70595528 CCTATAACCCGTATCTGTCGCCGGAGTGGGTTATGAAGAGT
1 CCTATAACCCGTATCCGTCGCCGGAGTGGGCTATGAAGAGT
*
70595569 CCTATAACCCGTATCCGTTGCCGGAGTGGGCTATGAAGAGT
1 CCTATAACCCGTATCCGTCGCCGGAGTGGGCTATGAAGAGT
70595610 TACCGATCCA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (41 bp):
CCTATAACCCGTATCCGTCGCCGGAGTGGGCTATGAAGAGT
Found at i:70596464 original size:45 final size:45
Alignment explanation
Indices: 70596369--70596538 Score: 195
Period size: 45 Copynumber: 3.8 Consensus size: 45
70596359 TTCATCCACT
* * * *
70596369 GGCATT-TTGCCTGCTAGGTTCGAA-GCCCG-ATA-TCATTTCACC
1 GGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATCTCACC
* * *
70596411 GGCATTATAGCCTGCTAAGCTCGAAGGCCTGAATAGTATCTCACC
1 GGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACC
* * *
70596456 GGCATTATAGCCTACTAGGTTCAAAGGCCCGAATAGTATCTCACT
1 GGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACC
* *
70596501 AGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 GGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
70596539 CCATACGATA
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
42 6 0.06
43 15 0.14
44 4 0.04
45 83 0.76
46 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (45 bp):
GGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACC
Found at i:70598971 original size:79 final size:80
Alignment explanation
Indices: 70598765--70598989 Score: 233
Period size: 79 Copynumber: 2.8 Consensus size: 80
70598755 TTGAATGATG
* * * * * * *
70598765 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACGAAGATCCGAAGGCATT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAGACCCGAAGGCATT
*
70598829 TGTGCGAGATACTGAA
65 TGTGCGAGATACTAAA
* *
70598845 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCTGGGCTAAG-CCCGAAGGCAT
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGACCCGAAGGCAT
*
70598907 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
* ** * * * *
70598924 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGAATTT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTT
70598989 G
66 G
70598990 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
78 1 0.01
79 66 0.55
80 45 0.38
81 8 0.07
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:70598996 original size:40 final size:40
Alignment explanation
Indices: 70598765--70598989 Score: 235
Period size: 40 Copynumber: 5.7 Consensus size: 40
70598755 TTGAATGATG
* * * *
70598765 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
70598805 TCCGGACGAAGAT-CCGAAGGCATTTGTGCGAGATACTGAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
70598845 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70598885 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
70598924 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
70598965 -CCGGGCTATGTCCCGAAGGAATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70598990 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 35 0.22
40 115 0.72
41 10 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70599011 original size:79 final size:79
Alignment explanation
Indices: 70598858--70599022 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
70598848 GGACTAAGAT
* * * **
70598858 CCGAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGAATTTGAACGAGTTACTAA
* *
70598923 ATCTGGGTTAAGTC
66 ATCTCGGTTAAATC
* *
70598937 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGAATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGAATTTGAACGAGTTA-C
* *
70599000 TATATC-CGGTTAAATT
63 TAAATCTCGGTTAAATC
70599016 CCGAAGG
1 CCGAAGG
70599023 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.65
80 23 0.32
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGAATTTGAACGAGTTACTAA
ATCTCGGTTAAATC
Found at i:70601348 original size:40 final size:40
Alignment explanation
Indices: 70601304--70601400 Score: 106
Period size: 40 Copynumber: 2.4 Consensus size: 40
70601294 GAAATCAGTA
* * *
70601304 GCATGAATATGCCTTTC-GGGTTACCAAAGTACTAATAGGG
1 GCATGAATATG-CATTCAGGGGTACCAAAGTACAAATAGGG
* * *
70601344 GCATGTATGTGCATTCAGGGGTACCGAAGTACAAATAGGG
1 GCATGAATATGCATTCAGGGGTACCAAAGTACAAATAGGG
* *
70601384 GCATGTATGTGCATTCA
1 GCATGAATATGCATTCA
70601401 AACAATAATT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
39 4 0.08
40 46 0.92
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (40 bp):
GCATGAATATGCATTCAGGGGTACCAAAGTACAAATAGGG
Found at i:70606851 original size:48 final size:48
Alignment explanation
Indices: 70606780--70606899 Score: 231
Period size: 48 Copynumber: 2.5 Consensus size: 48
70606770 ATTACAAACA
70606780 TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
1 TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
*
70606828 TCAATTATTTACCCTATTAACAAATAATCTCCTTTTCAAAATTTCATT
1 TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
70606876 TCAATTATTTACCCTATTAACAAA
1 TCAATTATTTACCCTATTAACAAA
70606900 GCTCGGACTA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 71 1.00
ACGTcount: A:0.38, C:0.20, G:0.00, T:0.42
Consensus pattern (48 bp):
TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
Found at i:70612549 original size:20 final size:21
Alignment explanation
Indices: 70612516--70612554 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
70612506 AACTCAATGG
70612516 AGCTCAATTCAGCTCAATTCT
1 AGCTCAATTCAGCTCAATTCT
*
70612537 AGCTC-ATTGAGCTCAATT
1 AGCTCAATTCAGCTCAATT
70612555 TTATCCTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (21 bp):
AGCTCAATTCAGCTCAATTCT
Found at i:70612653 original size:14 final size:14
Alignment explanation
Indices: 70612634--70612663 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
70612624 GTTTCAGCTC
70612634 ATAAATATGTGTTA
1 ATAAATATGTGTTA
*
70612648 ATAAATATGTTTTA
1 ATAAATATGTGTTA
70612662 AT
1 AT
70612664 CTGATTCTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (14 bp):
ATAAATATGTGTTA
Found at i:70614535 original size:17 final size:19
Alignment explanation
Indices: 70614493--70614536 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
70614483 ATGAAATTTT
*
70614493 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
70614512 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
70614530 AA-TATTA
1 AATTATTA
70614537 CTTTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:70621356 original size:13 final size:13
Alignment explanation
Indices: 70621338--70621362 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70621328 GAATTAACAT
70621338 GTGTGAAAGTTTC
1 GTGTGAAAGTTTC
70621351 GTGTGAAAGTTT
1 GTGTGAAAGTTT
70621363 GATCATTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.04, G:0.32, T:0.40
Consensus pattern (13 bp):
GTGTGAAAGTTTC
Found at i:70621689 original size:911 final size:912
Alignment explanation
Indices: 70619928--70621751 Score: 3425
Period size: 911 Copynumber: 2.0 Consensus size: 912
70619918 CATCCTAAAT
* * *
70619928 TTTGTACGAACAATTCATGTTTATTTGATGCTTGGCCTTTAACTGAGGAAACGAAACTTGAAGAT
1 TTTGTACGAACAATTCATGTTTATTTAATGCTTGGCCTTTAACTAAGGAAACGAAACTTGAAGAC
*
70619993 TCTAATTATAACTTAAAATCACTCCTTGTTCATTCTATGTTGCCGGTTATAAAATTATTGATTCA
66 TCTAATTATAACTTAAAATCACTCCTTGTTCATTCTATGTTGCCAGTTATAAAATTATTGATTCA
70620058 TCATGAAAAGGTAAGACCCATCGATGTTGTTGAATCACGACAATTAATGTTGAATGTTGTTGAGA
131 TCATGAAAAGGTAAGACCCATCGATGTTGTTGAATCACGACAATTAATGTTGAATGTTGTTGAGA
70620123 AAGTTGCTAGTGACATAGTTTTCAAAAGACCTCCTTATTTTGCTTTGGTTTATTGTCATTTTCTC
196 AAGTTGCTAGTGACATAGTTTTCAAAAGACCTCCTTATTTTGCTTTGGTTTATTGTCATTTTCTC
*
70620188 TGGTTTTTTGTTGACAATTTCGTTTTAAGTGGAGGCATGAAGAATTGTTTACTTGATCTGTTTTG
261 TGGTTTTTTGTTGACAATTTCGTTTTAAGTGGAGGCATGAAGAATTGTTTACTTGATCTATTTTG
70620253 TGTGTTGAAAAATGTGTTGGTGACGTTGGATTAATTCAACTTGAGCAAACTTTGGAAGTGCATTG
326 TGTGTTGAAAAATGTGTTGGTGACGTTGGATTAATTCAACTTGAGCAAACTTTGGAAGTGCATTG
70620318 TAACAATCCGGTTTAGACCCTAGTCGAAATAGTGGTTTTAGGACCACAAATCTGAGTCAAAAAAA
391 TAACAATCCGGTTTAGACCCTAGTCGAAATAGTGGTTTTAGGACCACAAATCTGAGTCAAAAAAA
70620383 TATTTAAATATTATTTTCCATGTTTATGATATGTGAATTAACATGTGTAAAAGTTTCGTGTGAAA
456 TATTTAAATATTATTTTCCATGTTTATGATATGTGAATTAACATGTGTAAAAGTTTCGTGTGAAA
*
70620448 GTTTGATCATTTGTGTGCTTAATTCGATAAAAGGACCTAATCGCGTAAAATGTAAAAGTTGCCTG
521 GTTTGATCATTTGTGTGCTTAATTCGATAAAAGGACCTAATCGCGTAAAATGTAAAAGTTGCCAG
*
70620513 CTATATGTTAAAAGTGTCTATTTGATTTGTCTTTGATAATGAGAGGTCCTTATGTGGTTATTATG
586 CTATATGTTAAAAGTGTCTATTTGATTTGTCTTTGATAATGAGAGGTCCTTATATGGTTATTATG
*
70620578 CCATTTATATGTATAATGGACACTAATGGTGTAACATCCCAAAATAGGGCCTAGTCAAAATAGTG
651 CCATTTATATGTATAATGGACACTAATGGTATAACATCCCAAAATAGGGCCTAGTCAAAATAGTG
*
70620643 GTTTCGGGACCATAAATCTGACATCAAAATATTTATTTTATGATTATTATGAGGCATAGAATATG
716 GTTTCGGGACCATAAATCTGACATCAAAATATTTATTTTATGATTATTATAAGGCATAGAATATG
*
70620708 AGTATATGCATGTGTTAAAGTTTCACGAAGAAATTCTAAGTATAACATGTCCAATTGGAAATTAG
781 AGTATATGCATGTGTTAAAGTTTCACGAAGAAATTATAAGTATAACATGTCCAATTGGAAATTAG
*
70620773 GGACTAAGTTGAATAAATTGCAAAACTTGGATTCTAGAAGCAATTTGTATGAAATTGCTATAGAT
846 GGACTAAGTTGAATAAATTGCAAAACTTGAATTCTAGAAGCAATTTGTATGAAATTGCTATAGAT
70620838 TA
911 TA
70620840 TTTGTACGAACAATTCATGTTTATTTAATGCTTGGCCTTTAACTAAGGAAACGAAACTTGAAGAC
1 TTTGTACGAACAATTCATGTTTATTTAATGCTTGGCCTTTAACTAAGGAAACGAAACTTGAAGAC
70620905 TCTAATTATAACTTAAAATCACTCCTTGTTCATTCTATGTTGCCAGTTATAAAATTATTGATTCA
66 TCTAATTATAACTTAAAATCACTCCTTGTTCATTCTATGTTGCCAGTTATAAAATTATTGATTCA
70620970 TCATGAAAAGGTAAGACCCATCGATGTTGTTGAATCACGACAATTAATGTTGAATGTTGTTGAGA
131 TCATGAAAAGGTAAGACCCATCGATGTTGTTGAATCACGACAATTAATGTTGAATGTTGTTGAGA
*
70621035 AAGTTGCTAGTGGCATAGTTTTCAAAAGACCTCCTTATTTTGCTTTGGTTTATTGTCATTTTCTC
196 AAGTTGCTAGTGACATAGTTTTCAAAAGACCTCCTTATTTTGCTTTGGTTTATTGTCATTTTCTC
* *
70621100 TGGTTTTTTGTTGACAATTTTGTTTTAAGTGGAGGCATGAAGAGTTGTTTACTTGATCTATTTTG
261 TGGTTTTTTGTTGACAATTTCGTTTTAAGTGGAGGCATGAAGAATTGTTTACTTGATCTATTTTG
*
70621165 TGTGTTGAAAAATGTGTTGGTGATGTTGGATTAATTCAACTTGAGCAAACTTTGGAAGTGCATTG
326 TGTGTTGAAAAATGTGTTGGTGACGTTGGATTAATTCAACTTGAGCAAACTTTGGAAGTGCATTG
* * * *
70621230 TAACAGTCCTGTTTAGA-CCTAGTCGGAATAGTGGTTTTAGGACCACAAATCTGAGTCAAAAAAT
391 TAACAATCCGGTTTAGACCCTAGTCGAAATAGTGGTTTTAGGACCACAAATCTGAGTCAAAAAAA
* *
70621294 TATTTAAATATTATTTTCCATGTTTATGATGTGTGAATTAACATGTGTGAAAGTTTCGTGTGAAA
456 TATTTAAATATTATTTTCCATGTTTATGATATGTGAATTAACATGTGTAAAAGTTTCGTGTGAAA
70621359 GTTTGATCATTTGTGTGCTTAATTCGATAAAAGGACCTAATCGCGTAAAATGTAAAAGTTGCCAG
521 GTTTGATCATTTGTGTGCTTAATTCGATAAAAGGACCTAATCGCGTAAAATGTAAAAGTTGCCAG
70621424 CTATATGTTAAAAGTGTCTATTTGATTTGTCTTTGATAATGAGAGGTCCTTATATGGTTATTATG
586 CTATATGTTAAAAGTGTCTATTTGATTTGTCTTTGATAATGAGAGGTCCTTATATGGTTATTATG
70621489 CCATTTATATGTATAATGGACACTAATGGTATAACATCCCAAAATAGGGCCTAGTCAAAATAGTG
651 CCATTTATATGTATAATGGACACTAATGGTATAACATCCCAAAATAGGGCCTAGTCAAAATAGTG
*
70621554 GTTTCGGGACCATAAATCTGACATCAAAATATTTATTTTATGATTATTATAAGGCCTAGAATATG
716 GTTTCGGGACCATAAATCTGACATCAAAATATTTATTTTATGATTATTATAAGGCATAGAATATG
*
70621619 AGTATATGCATGTGTTAAAGTTTCATGAAGAAATTATAAGTATAACATGTCCAATTGGAAATTAG
781 AGTATATGCATGTGTTAAAGTTTCACGAAGAAATTATAAGTATAACATGTCCAATTGGAAATTAG
*
70621684 GGACTAAGTTGAATAAATTGCAAAACTTGAATTCTAGAATCAATTTGTATGAAATTGCTATAGAT
846 GGACTAAGTTGAATAAATTGCAAAACTTGAATTCTAGAAGCAATTTGTATGAAATTGCTATAGAT
70621749 TA
911 TA
70621751 T
1 T
70621752 GAATTAGAAG
Statistics
Matches: 888, Mismatches: 24, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
911 492 0.55
912 396 0.45
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37
Consensus pattern (912 bp):
TTTGTACGAACAATTCATGTTTATTTAATGCTTGGCCTTTAACTAAGGAAACGAAACTTGAAGAC
TCTAATTATAACTTAAAATCACTCCTTGTTCATTCTATGTTGCCAGTTATAAAATTATTGATTCA
TCATGAAAAGGTAAGACCCATCGATGTTGTTGAATCACGACAATTAATGTTGAATGTTGTTGAGA
AAGTTGCTAGTGACATAGTTTTCAAAAGACCTCCTTATTTTGCTTTGGTTTATTGTCATTTTCTC
TGGTTTTTTGTTGACAATTTCGTTTTAAGTGGAGGCATGAAGAATTGTTTACTTGATCTATTTTG
TGTGTTGAAAAATGTGTTGGTGACGTTGGATTAATTCAACTTGAGCAAACTTTGGAAGTGCATTG
TAACAATCCGGTTTAGACCCTAGTCGAAATAGTGGTTTTAGGACCACAAATCTGAGTCAAAAAAA
TATTTAAATATTATTTTCCATGTTTATGATATGTGAATTAACATGTGTAAAAGTTTCGTGTGAAA
GTTTGATCATTTGTGTGCTTAATTCGATAAAAGGACCTAATCGCGTAAAATGTAAAAGTTGCCAG
CTATATGTTAAAAGTGTCTATTTGATTTGTCTTTGATAATGAGAGGTCCTTATATGGTTATTATG
CCATTTATATGTATAATGGACACTAATGGTATAACATCCCAAAATAGGGCCTAGTCAAAATAGTG
GTTTCGGGACCATAAATCTGACATCAAAATATTTATTTTATGATTATTATAAGGCATAGAATATG
AGTATATGCATGTGTTAAAGTTTCACGAAGAAATTATAAGTATAACATGTCCAATTGGAAATTAG
GGACTAAGTTGAATAAATTGCAAAACTTGAATTCTAGAAGCAATTTGTATGAAATTGCTATAGAT
TA
Found at i:70628891 original size:34 final size:34
Alignment explanation
Indices: 70628848--70628918 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
70628838 CTGAATTAAA
*
70628848 AGAATTAAAGTCTTAGTTGCAAGAGTTGACCGAT
1 AGAATTAAAGTCCTAGTTGCAAGAGTTGACCGAT
70628882 AGAATTAAAGTCCTAGTTGCAAGAGTTGACCGAT
1 AGAATTAAAGTCCTAGTTGCAAGAGTTGACCGAT
70628916 AGA
1 AGA
70628919 GGGTTTGCTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.27
Consensus pattern (34 bp):
AGAATTAAAGTCCTAGTTGCAAGAGTTGACCGAT
Found at i:70631325 original size:20 final size:20
Alignment explanation
Indices: 70631300--70631338 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
70631290 GAACTAGAAA
70631300 AGATTCATGATGTGTTTCAC
1 AGATTCATGATGTGTTTCAC
70631320 AGATTCATGATGTGTTTCA
1 AGATTCATGATGTGTTTCA
70631339 TGTATCGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.41
Consensus pattern (20 bp):
AGATTCATGATGTGTTTCAC
Found at i:70633850 original size:30 final size:30
Alignment explanation
Indices: 70633816--70633875 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
70633806 GTGTGTCTTA
*
70633816 GCCGTGTGTGACACATGACTATGTTGCACG
1 GCCGTGTGTGACACACGACTATGTTGCACG
*
70633846 GCCGTGTGTGACACACGGCTATGTTGCACG
1 GCCGTGTGTGACACACGACTATGTTGCACG
70633876 ATAGTGTGTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.18, C:0.25, G:0.32, T:0.25
Consensus pattern (30 bp):
GCCGTGTGTGACACACGACTATGTTGCACG
Found at i:70633883 original size:30 final size:30
Alignment explanation
Indices: 70633819--70633884 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
70633809 TGTCTTAGCC
* * *
70633819 GTGTGTGACACATGACTATGTTGCACGGCC
1 GTGTGTGACACACGACTATGTTGCACGACA
* *
70633849 GTGTGTGACACACGGCTATGTTGCACGATA
1 GTGTGTGACACACGACTATGTTGCACGACA
70633879 GTGTGT
1 GTGTGT
70633885 CCCTTGGGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.20, C:0.20, G:0.32, T:0.29
Consensus pattern (30 bp):
GTGTGTGACACACGACTATGTTGCACGACA
Found at i:70643030 original size:49 final size:49
Alignment explanation
Indices: 70642958--70643149 Score: 172
Period size: 50 Copynumber: 3.9 Consensus size: 49
70642948 CGAAGCTATT
* *
70642958 TGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTC
* * *
70643007 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-TC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAACAGTC
** ** * * * *
70643057 TAATACATGTAGTAGCCTGCACCTAGTACTATACACGTGATC-ACAGTTTTC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TC
* * * *
70643108 GGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
70643150 TCACAATAGA
Statistics
Matches: 113, Mismatches: 24, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 36 0.32
50 38 0.34
51 36 0.32
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (49 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTC
Found at i:70648474 original size:26 final size:26
Alignment explanation
Indices: 70648396--70648475 Score: 62
Period size: 26 Copynumber: 3.2 Consensus size: 26
70648386 ACAGTCTGGA
* *
70648396 ACACGTAGTAGCCTGCACTTAGTACT
1 ACACGTACTAGCCTGCACCTAGTACT
* *
70648422 ACAC--ACGT-GACCT-CACC-ATCTAAT
1 ACACGTAC-TAG-CCTGCACCTA-GTACT
70648446 ACACGTACTAGCCTGCACCTAGTACT
1 ACACGTACTAGCCTGCACCTAGTACT
70648472 ACAC
1 ACAC
70648476 ACGTGATCAC
Statistics
Matches: 40, Mismatches: 6, Indels: 16
0.65 0.10 0.26
Matches are distributed among these distances:
23 1 0.03
24 12 0.30
25 8 0.20
26 18 0.45
27 1 0.03
ACGTcount: A:0.30, C:0.34, G:0.14, T:0.23
Consensus pattern (26 bp):
ACACGTACTAGCCTGCACCTAGTACT
Found at i:70657387 original size:46 final size:46
Alignment explanation
Indices: 70657320--70657492 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
70657310 TGTAACCCGC
*
70657320 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
70657366 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
70657416 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
70657459 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC
70657493 AGATGCTCAA
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 59 0.56
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:70657436 original size:93 final size:93
Alignment explanation
Indices: 70657327--70657498 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
70657317 CGCCCATAAG
* * *
70657327 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
70657392 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCAGATGCCTAGTTACATCTCA
*
70657420 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70657485 ACGAGTTCAGATGC
66 ACGAGTTCAGATGC
70657499 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCAGATGCCTAGTTACATCTCA
Found at i:70664487 original size:39 final size:39
Alignment explanation
Indices: 70664444--70664522 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
70664434 CCATACTTAA
70664444 AATTACAAGCCATTTACCAAAAGTCTTCCGGATAGTGTG
1 AATTACAAGCCATTTACCAAAAGTCTTCCGGATAGTGTG
*
70664483 AATTACAAGCCATTTACCAAAAGTTTTCCGGATAGTGTG
1 AATTACAAGCCATTTACCAAAAGTCTTCCGGATAGTGTG
70664522 A
1 A
70664523 CTGAGCGTTC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (39 bp):
AATTACAAGCCATTTACCAAAAGTCTTCCGGATAGTGTG
Found at i:70665002 original size:46 final size:48
Alignment explanation
Indices: 70664935--70665157 Score: 245
Period size: 47 Copynumber: 4.8 Consensus size: 48
70664925 TGTAACCCGC
* *
70664935 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG-G-C-GTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCCAGTT-ACAT
*
70664981 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA-GCC-AGTTACAT
*
70665031 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA-GCC-AGTTACAT
* *
70665078 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA--CA-TTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCCAGTT-ACAT
*
70665121 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
70665158 TGCTCAACCA
Statistics
Matches: 160, Mismatches: 8, Indels: 18
0.86 0.04 0.10
Matches are distributed among these distances:
42 2 0.01
43 4 0.03
44 2 0.01
45 2 0.01
46 63 0.39
47 76 0.47
48 3 0.02
49 2 0.01
50 3 0.02
51 3 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (48 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCCAGTTACAT
Found at i:70665043 original size:27 final size:27
Alignment explanation
Indices: 70665013--70665091 Score: 66
Period size: 27 Copynumber: 3.2 Consensus size: 27
70665003 CTCAACGAGT
70665013 TCGGATGCCTAGTTACATCTCACGAAC
1 TCGGATGCCTAGTTACATCTCACGAAC
* **
70665040 TCGGA---CTCA---AC-TC-AACGAGT
1 TCGGATGCCT-AGTTACATCTCACGAAC
70665060 TCGGATGCCTAGTTACATCTCACGAAC
1 TCGGATGCCTAGTTACATCTCACGAAC
70665087 TCGGA
1 TCGGA
70665092 CTCAACTCAA
Statistics
Matches: 37, Mismatches: 6, Indels: 18
0.61 0.10 0.30
Matches are distributed among these distances:
20 9 0.24
21 2 0.05
22 3 0.08
23 2 0.05
24 2 0.05
25 3 0.08
26 2 0.05
27 14 0.38
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (27 bp):
TCGGATGCCTAGTTACATCTCACGAAC
Found at i:70665057 original size:47 final size:47
Alignment explanation
Indices: 70664989--70665160 Score: 246
Period size: 47 Copynumber: 3.7 Consensus size: 47
70664979 ATCCATAAGT
70664989 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
70665036 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
70665083 GAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-C
70665129 GAACTCGGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC
70665161 TCAACCATCC
Statistics
Matches: 115, Mismatches: 3, Indels: 12
0.88 0.02 0.09
Matches are distributed among these distances:
42 2 0.02
43 4 0.03
44 2 0.02
45 2 0.02
46 29 0.25
47 76 0.66
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:70667056 original size:27 final size:27
Alignment explanation
Indices: 70667025--70667202 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
70667015 TAAATTGTAC
70667025 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *** *
70667052 TGCACTAAGTGTGCGAAACGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70667078 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
70667106 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
70667134 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70667161 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
70667188 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70667203 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:70667166 original size:82 final size:81
Alignment explanation
Indices: 70667026--70667181 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
70667016 AAATTGTACA
* *
70667026 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAACGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAAGTGT
70667091 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
*** *
70667107 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGAT-GCACTAAGT
*
70667171 GTGCGAGTTGA
64 GTGCGAATTGA
70667182 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:70667193 original size:82 final size:81
Alignment explanation
Indices: 70667022--70667202 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
70667012 GATTAAATTG
* *
70667022 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAACGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAA
70667087 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * *** *
70667103 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGAT-GCACT
* **
70667167 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
70667185 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
70667203 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:70681565 original size:20 final size:20
Alignment explanation
Indices: 70681536--70681580 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
70681526 AGCACATGTA
* *
70681536 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
70681556 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
70681576 TTCAT
1 TTCAT
70681581 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:70686438 original size:48 final size:48
Alignment explanation
Indices: 70686377--70686545 Score: 207
Period size: 48 Copynumber: 3.6 Consensus size: 48
70686367 TGATACGTGT
70686377 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAAA
* * * * * ** *
70686425 GCTAGTGTGAGACATGTTTGGGACATGCATCGACATTGAG--ACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAAA
* *
70686471 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAAA
* * *
70686519 GCTAGTGTAAGACCTGACTGAGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
70686546 GCGTCAGCTT
Statistics
Matches: 98, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
46 37 0.38
48 61 0.62
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAAA
Found at i:70691872 original size:24 final size:24
Alignment explanation
Indices: 70691778--70691865 Score: 131
Period size: 24 Copynumber: 3.7 Consensus size: 24
70691768 GATTCAACTC
* * * *
70691778 CGCACACATAGTGCCAAATAATTC
1 CGCACACATAGTGCCATACAAATA
*
70691802 CGCACACATAGTGCCATACATATA
1 CGCACACATAGTGCCATACAAATA
70691826 CGCACACATAGTGCCATACAAATA
1 CGCACACATAGTGCCATACAAATA
70691850 CGCACACATAGTGCCA
1 CGCACACATAGTGCCA
70691866 CTCAAATCTG
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 58 1.00
ACGTcount: A:0.38, C:0.31, G:0.14, T:0.18
Consensus pattern (24 bp):
CGCACACATAGTGCCATACAAATA
Found at i:70694753 original size:46 final size:46
Alignment explanation
Indices: 70694699--70694965 Score: 374
Period size: 46 Copynumber: 5.8 Consensus size: 46
70694689 CTATGATAGA
70694699 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
* *
70694745 AAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATGTG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
70694791 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
* ***
70694837 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACGGGG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA-TATG
** * * *
70694884 AAATGAATAAGACCATGGTTGAATGATACCATGGCAACATGACA-G
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
* * * *
70694929 AAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 -AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
70694966 TCATGTCGAA
Statistics
Matches: 200, Mismatches: 19, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
45 1 0.00
46 160 0.80
47 39 0.19
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.21
Consensus pattern (46 bp):
AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
Found at i:70705015 original size:43 final size:44
Alignment explanation
Indices: 70704934--70705089 Score: 155
Period size: 43 Copynumber: 3.6 Consensus size: 44
70704924 TGTATTATCG
* *
70704934 TGTAAGACCACGTCTAGGACGTTGGCTTCGACTA--TGATTTACG
1 TGTAAGACCACGTCTAGGACGTTGGCATCGA-TATTTGATTTACA
* *
70704977 TGTAAGACCACGTTTGGGACGTTGGCATC-ATATTTGATTT-CA
1 TGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTTACA
* * *
70705019 TGTAAGACC-CTGTCTGGGATAG-TGGTATCGATATTTGA-TTACA
1 TGTAAGACCAC-GTCTAGGA-CGTTGGCATCGATATTTGATTTACA
* *
70705062 TGTAAGACCATGTCTAGGATGTTGGCAT
1 TGTAAGACCACGTCTAGGACGTTGGCAT
70705090 TGTACGAGCT
Statistics
Matches: 94, Mismatches: 11, Indels: 16
0.78 0.09 0.13
Matches are distributed among these distances:
41 3 0.03
42 27 0.29
43 64 0.68
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (44 bp):
TGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTTACA
Found at i:70706993 original size:27 final size:27
Alignment explanation
Indices: 70706928--70706996 Score: 129
Period size: 27 Copynumber: 2.6 Consensus size: 27
70706918 TTCATATTTA
*
70706928 AATGGACTCAACTTATGTCCTAGGCTT
1 AATGGACTCAATTTATGTCCTAGGCTT
70706955 AATGGACTCAATTTATGTCCTAGGCTT
1 AATGGACTCAATTTATGTCCTAGGCTT
70706982 AATGGACTCAATTTA
1 AATGGACTCAATTTA
70706997 CCCCTAACTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (27 bp):
AATGGACTCAATTTATGTCCTAGGCTT
Found at i:70707157 original size:20 final size:19
Alignment explanation
Indices: 70707113--70707157 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
70707103 AGCACATGCA
*
70707113 TTCATAAAATTTTAGAATT
1 TTCATAAAATTTTACAATT
*
70707132 TGTCATCAAATTTTACAACTT
1 T-TCATAAAATTTTACAA-TT
70707153 TTCAT
1 TTCAT
70707158 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 1 0.05
20 18 0.82
21 3 0.14
ACGTcount: A:0.36, C:0.13, G:0.04, T:0.47
Consensus pattern (19 bp):
TTCATAAAATTTTACAATT
Found at i:70715598 original size:28 final size:27
Alignment explanation
Indices: 70715540--70715617 Score: 104
Period size: 28 Copynumber: 2.9 Consensus size: 27
70715530 GTCCTAGCAG
* *
70715540 ACTTA-CTTGTGTTTATTGTTCTCACGG
1 ACTTACCTTGTGTTTATTG-TCCCACGA
*
70715567 ACTTACCTTGTGTTTACTGTCCCAGCGA
1 ACTTACCTTGTGTTTATTGTCCCA-CGA
70715595 ACTTACCTTGTGTTTATTGTCCC
1 ACTTACCTTGTGTTTATTGTCCC
70715618 GATAGGCTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
27 9 0.20
28 36 0.80
ACGTcount: A:0.15, C:0.24, G:0.17, T:0.44
Consensus pattern (27 bp):
ACTTACCTTGTGTTTATTGTCCCACGA
Found at i:70720328 original size:35 final size:35
Alignment explanation
Indices: 70720282--70720351 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
70720272 TGCTAGGGAG
70720282 TATACCCGTGTGGACAAAATAAAGCATTTCCAAGC
1 TATACCCGTGTGGACAAAATAAAGCATTTCCAAGC
70720317 TATACCCGTGTGGACAAAATAAAGCATTTCCAAGC
1 TATACCCGTGTGGACAAAATAAAGCATTTCCAAGC
70720352 CTTATTTCTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (35 bp):
TATACCCGTGTGGACAAAATAAAGCATTTCCAAGC
Found at i:70727388 original size:24 final size:24
Alignment explanation
Indices: 70727360--70727407 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
70727350 ACAAGTACCC
*
70727360 TTTTTATCATAAGTAACATTTTTA
1 TTTTTATCATAAGCAACATTTTTA
70727384 TTTTTATCATAAGCAACATTTTTA
1 TTTTTATCATAAGCAACATTTTTA
70727408 CTCGAACATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.33, C:0.10, G:0.04, T:0.52
Consensus pattern (24 bp):
TTTTTATCATAAGCAACATTTTTA
Found at i:70727887 original size:22 final size:22
Alignment explanation
Indices: 70727844--70727897 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
70727834 TACAGGGCTC
* **
70727844 ACACGCCTGTGTGGTCCAAGGG
1 ACACGCCCGTGTGACCCAAGGG
*
70727866 ACACGCCCGTGTGACCCTAGGG
1 ACACGCCCGTGTGACCCAAGGG
*
70727888 -CACACCCGTG
1 ACACGCCCGTG
70727898 CTGCAGGCCG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 9 0.33
22 18 0.67
ACGTcount: A:0.19, C:0.35, G:0.31, T:0.15
Consensus pattern (22 bp):
ACACGCCCGTGTGACCCAAGGG
Found at i:70735735 original size:28 final size:28
Alignment explanation
Indices: 70735703--70735767 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
70735693 ATTTACTAGA
*
70735703 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TCT
70735731 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
70735759 ATACCCCTA
1 ATACCCCTA
70735768 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTCT
Found at i:70735914 original size:27 final size:27
Alignment explanation
Indices: 70735876--70735978 Score: 104
Period size: 27 Copynumber: 3.8 Consensus size: 27
70735866 AAGCGTCCTG
*
70735876 GTGGCTATGCCACAATTATCTGATCTA
1 GTGGCTCTGCCACAATTATCTGATCTA
70735903 GTGGCTCTGCCACATATT-TCTG-TCCTA
1 GTGGCTCTGCCACA-ATTATCTGAT-CTA
* *
70735930 GTGGCTCTGCCACGATTATCTGTATCTG
1 GTGGCTCTGCCACAATTATCTG-ATCTA
** *
70735958 GTAACTCTGTCAC-ATTATCTG
1 GTGGCTCTGCCACAATTATCTG
70735979 TTCTGGTAGC
Statistics
Matches: 65, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
26 4 0.06
27 45 0.69
28 15 0.23
29 1 0.02
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATTATCTGATCTA
Found at i:70735979 original size:27 final size:27
Alignment explanation
Indices: 70735934--70735986 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
70735924 GTCCTAGTGG
70735934 CTCTGCCACGATTATCTGTATCTGGTAA
1 CTCTGCCACGATTATCTGT-TCTGGTAA
*
70735962 CTCTGTCAC-ATTATCTGTTCTGGTA
1 CTCTGCCACGATTATCTGTTCTGGTA
70735987 GCCATGCTGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 7 0.29
27 9 0.38
28 8 0.33
ACGTcount: A:0.19, C:0.25, G:0.17, T:0.40
Consensus pattern (27 bp):
CTCTGCCACGATTATCTGTTCTGGTAA
Found at i:70735979 original size:54 final size:54
Alignment explanation
Indices: 70735870--70735979 Score: 132
Period size: 54 Copynumber: 2.0 Consensus size: 54
70735860 TGGAGGAAGC
* ** *
70735870 GTCCTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATTTCT
1 GTCCTAGTGGCTATGCCACAATTATCTGATCTAGTAACTCTGCCACATATATCT
* * * *
70735924 GTCCTAGTGGCTCTGCCACGATTATCTGTATCTGGTAACTCTGTCACAT-TATCT
1 GTCCTAGTGGCTATGCCACAATTATCTG-ATCTAGTAACTCTGCCACATATATCT
70735978 GT
1 GT
70735980 TCTGGTAGCC
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
54 31 0.66
55 16 0.34
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.36
Consensus pattern (54 bp):
GTCCTAGTGGCTATGCCACAATTATCTGATCTAGTAACTCTGCCACATATATCT
Found at i:70739576 original size:40 final size:40
Alignment explanation
Indices: 70739529--70739751 Score: 299
Period size: 40 Copynumber: 5.6 Consensus size: 40
70739519 CTCGCACAAG
* *
70739529 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAAT
*
70739569 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAAT
* * *
70739609 GCCTTCGGGACTTAG-TCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAAT
* * * *
70739648 GCCTTCGGGTCTTAGCCCGAATATAG-CAACTTGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCATAAAT
* *
70739688 GCCTTC-GGATCTTAGTCCGGATATAGTCACTAGCATAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCACTAGCATAAAT
70739728 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
70739752 CATTCGAATA
Statistics
Matches: 159, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 37 0.23
40 118 0.74
41 4 0.03
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAAT
Found at i:70739629 original size:79 final size:79
Alignment explanation
Indices: 70739493--70739751 Score: 301
Period size: 79 Copynumber: 3.3 Consensus size: 79
70739483 NNNNNNNNAT
* * * * * * * * *
70739493 CTTCGGAATTTAG-CCGGATATAACTACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAAAGCCTTCGGGACTTAG-TCGGATATAGT
70739556 CACTAGCATAAATGC
65 CACTAGCATAAATGC
*
70739571 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCATAAAAGCCTTCGGGACTTAGTCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAAAGCCTTCGGGACTTAGTCGGATATAGT
* *
70739635 CGCTAGCACAAATGC
65 CACTAGCATAAATGC
* * * *
70739650 CTTCGGGTCTTAGCCCGAATATAGCAACTTGCACAAATGCCTTC-GGATCTTAGTCCGGATATAG
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAAAGCCTTCGGGA-CTTAGT-CGGATATAG
*
70739714 TCACTAGCATAAAAGC
64 TCACTAGCATAAATGC
70739730 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
70739752 CATTCGAATA
Statistics
Matches: 154, Mismatches: 21, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
78 15 0.10
79 80 0.52
80 59 0.38
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAAAGCCTTCGGGACTTAGTCGGATATAGTC
ACTAGCATAAATGC
Found at i:70739708 original size:119 final size:120
Alignment explanation
Indices: 70739529--70739751 Score: 353
Period size: 119 Copynumber: 1.9 Consensus size: 120
70739519 CTCGCACAAG
* * *
70739529 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCGGGTCTTAGCCCGAATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
70739594 GTCACTAGCATAAAAGCCTTCGGGACTTAG-TCGGATATAGTCGCTAGCACAAAT
66 GTCACTAGCATAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* *
70739648 GCCTTCGGGTCTTAGCCCGAATATAG-CAACTTGCACAAATGCCTTC-GGATCTTAGTCCGGATA
1 GCCTTCGGGTCTTAGCCCGAATATAGTC-ACTAGCACAAATGCCTTCGGGA-CTTAGCCCGGATA
70739711 TAGTCACTAGCATAAAAGCCTTCGGGACTTAGCCCGGATAT
64 TAGTCACTAGCATAAAAGCCTTCGGGACTTAGCCCGGATAT
70739752 CATTCGAATA
Statistics
Matches: 95, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
118 4 0.04
119 84 0.88
120 7 0.07
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (120 bp):
GCCTTCGGGTCTTAGCCCGAATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
GTCACTAGCATAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:70747778 original size:40 final size:40
Alignment explanation
Indices: 70747704--70747914 Score: 266
Period size: 40 Copynumber: 5.3 Consensus size: 40
70747694 TCTTCGAGAT
* * *
70747704 TTAG-CCGGATATAGCCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * *
70747742 TTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
*
70747782 TTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* *
70747822 TTAGCCCGGATATAG-CAACTCGCACAAATGCCTTCGGATC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTC
* * * * *
70747862 TTAGTCCGGATATAGTCACTAGCATAAAAGCCTTAGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
70747902 TTAGCCCGGATAT
1 TTAGCCCGGATAT
70747915 CATTCGAATA
Statistics
Matches: 148, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
38 4 0.03
39 17 0.11
40 126 0.85
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
Found at i:70754392 original size:8 final size:8
Alignment explanation
Indices: 70754379--70754409 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
70754369 CTAGATCGGC
70754379 AAAAGCCG
1 AAAAGCCG
70754387 AAAAGCCG
1 AAAAGCCG
*
70754395 AAATGCCG
1 AAAAGCCG
70754403 AAAAGCC
1 AAAAGCC
70754410 AGTATTTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.48, C:0.26, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:70754689 original size:28 final size:28
Alignment explanation
Indices: 70754657--70754721 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
70754647 ATTTACTAGA
*
70754657 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TCT
70754685 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
70754713 ATACCCCTA
1 ATACCCCTA
70754722 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTCT
Found at i:70754919 original size:28 final size:26
Alignment explanation
Indices: 70754827--70754938 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
70754817 AGGAAGCGTC
*
70754827 CTGGTGGCTATGCCACAATTATCTGATT
1 CTGGTGGCTCTGCCAC-ATTATCTG-TT
* *
70754855 -TGGTGGCTCCGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
70754881 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
70754909 CTGGTGACTCTGCCACATTATATGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
70754935 CTGG
1 CTGG
70754939 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
26 9 0.12
27 46 0.63
28 18 0.25
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:70754935 original size:54 final size:54
Alignment explanation
Indices: 70754827--70754938 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
70754817 AGGAAGCGTC
* * * *
70754827 CTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCCGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCCGCCACATATATATGTT
* * *
70754881 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGCCACAT-TATATGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCCGCCACATATATATGTT
70754935 CTGG
1 CTGG
70754939 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCCGCCACATATATATGTT
Found at i:70756259 original size:16 final size:16
Alignment explanation
Indices: 70756240--70756270 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70756230 CTAACCCAAG
70756240 TGTTAATTTCCAAAAT
1 TGTTAATTTCCAAAAT
*
70756256 TGTTAATTTTCAAAA
1 TGTTAATTTCCAAAA
70756271 GTTTCCATTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.10, G:0.06, T:0.45
Consensus pattern (16 bp):
TGTTAATTTCCAAAAT
Found at i:70759560 original size:42 final size:43
Alignment explanation
Indices: 70759498--70759593 Score: 115
Period size: 42 Copynumber: 2.3 Consensus size: 43
70759488 TGAGATTTAT
* *
70759498 GTGTAAGACCATGTCCGGGAC-ATCGGCATCG-TATTTGATTTC
1 GTGTAAGACCATATCCGGGACAAT-GGCATCGATATTTGATTAC
* * *
70759540 GTGTAAGACCCTATCTGGGACAATGGCATTGATATTTGATTAC
1 GTGTAAGACCATATCCGGGACAATGGCATCGATATTTGATTAC
*
70759583 ATGTAAGACCA
1 GTGTAAGACCA
70759594 CGTCTAGGAT
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 24 0.53
43 21 0.47
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCATATCCGGGACAATGGCATCGATATTTGATTAC
Found at i:70760963 original size:21 final size:22
Alignment explanation
Indices: 70760939--70760979 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
70760929 TGTTGATATT
70760939 TGAC-TTTGA-TATGATAATGTA
1 TGACTTTTGACTATGA-AATGTA
70760960 TGACTTTTGACTATGAAATG
1 TGACTTTTGACTATGAAATG
70760980 ATTGCGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.22
22 9 0.50
23 5 0.28
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (22 bp):
TGACTTTTGACTATGAAATGTA
Found at i:70762986 original size:48 final size:48
Alignment explanation
Indices: 70762803--70763060 Score: 199
Period size: 48 Copynumber: 5.4 Consensus size: 48
70762793 GGTGCCAACA
* * * *
70762803 CCATATCCCAGATATGGTCTTACATGGGACCACATAACGATGCTAATG
1 CCATGTCCCAGACATGGTCTTACATGGGATCACATAAAGATGCTAATG
* * * * * *
70762851 CCATGTCCTAGACATAGTCTTACATGGGATCGC--ACATAT-CGAA-G
1 CCATGTCCCAGACATGGTCTTACATGGGATCACATAAAGATGCTAATG
* * ** * *
70762895 CCGATAG-CCCAG-CTATGGTCTTACACGATG-TCTTATTATGATGCTAATG
1 CC-AT-GTCCCAGAC-ATGGTCTTACATG-GGATCACATAAAGATGCTAATG
* * *
70762944 CCATGTCCCGGACATGGTCTTACATGGGATCACATAAAGATGCCAAAG
1 CCATGTCCCAGACATGGTCTTACATGGGATCACATAAAGATGCTAATG
** *
70762992 CCATGTCCCAGACATGGTCTTACATGGGATCACATGTCA-ATGCTAAAG
1 CCATGTCCCAGACATGGTCTTACATGGGATCACAT-AAAGATGCTAATG
* *
70763040 CCATATCCCAGATATGGTCTT
1 CCATGTCCCAGACATGGTCTT
70763061 CTACGGGAGC
Statistics
Matches: 162, Mismatches: 36, Indels: 24
0.73 0.16 0.11
Matches are distributed among these distances:
44 4 0.02
45 22 0.14
46 5 0.03
47 4 0.02
48 122 0.75
49 5 0.03
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACATGGGATCACATAAAGATGCTAATG
Found at i:70764041 original size:74 final size:74
Alignment explanation
Indices: 70763954--70764095 Score: 284
Period size: 74 Copynumber: 1.9 Consensus size: 74
70763944 AACTTAAAAC
70763954 CCAAAATTAAATCAGAATATAAAATAATAAAAATAAACTAACTTAGAAAAACCAACTTTGCAGAT
1 CCAAAATTAAATCAGAATATAAAATAATAAAAATAAACTAACTTAGAAAAACCAACTTTGCAGAT
70764019 GATTTTTCA
66 GATTTTTCA
70764028 CCAAAATTAAATCAGAATATAAAATAATAAAAATAAACTAACTTAGAAAAACCAACTTTGCAGAT
1 CCAAAATTAAATCAGAATATAAAATAATAAAAATAAACTAACTTAGAAAAACCAACTTTGCAGAT
70764093 GAT
66 GAT
70764096 GTGGCCACTC
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 68 1.00
ACGTcount: A:0.54, C:0.13, G:0.07, T:0.25
Consensus pattern (74 bp):
CCAAAATTAAATCAGAATATAAAATAATAAAAATAAACTAACTTAGAAAAACCAACTTTGCAGAT
GATTTTTCA
Found at i:70770509 original size:27 final size:26
Alignment explanation
Indices: 70770461--70770512 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
70770451 GCGAGGCTGC
*
70770461 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
70770487 CAGATATATGTGGCGACGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
70770513 TTGCAACGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:70770512 original size:90 final size:90
Alignment explanation
Indices: 70770263--70770500 Score: 460
Period size: 90 Copynumber: 2.6 Consensus size: 90
70770253 CACACCACAG
70770263 AGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATATTGTGGCTAGGCCG
1 AGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATATTGTGGCTAGGCCG
70770328 CCAGAACAGATATATATATGGCACT
66 CCAGAACAGATATATATATGGCACT
70770353 AGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATATTGTGGCTAGGCCG
1 AGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATATTGTGGCTAGGCCG
70770418 CCAGAACAGATATATATATGGCACT
66 CCAGAACAGATATATATATGGCACT
70770443 AGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGA-ACAGATATATGTGGC
1 AGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATAT-TGTGGC
70770501 GACGCCACCA
Statistics
Matches: 147, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
89 8 0.05
90 139 0.95
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (90 bp):
AGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATATTGTGGCTAGGCCG
CCAGAACAGATATATATATGGCACT
Found at i:70779324 original size:48 final size:48
Alignment explanation
Indices: 70779245--70779476 Score: 201
Period size: 48 Copynumber: 4.9 Consensus size: 48
70779235 CAAGGTAGGG
* * * * *
70779245 TGCCAATGCCATATCCCAGATATGATCTTACATGGGACCACATAACGA
1 TGCCAATTCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGA
* *
70779293 TGCCAATTCCATGTCCCAGACATGGTATTACATGGGATCACACATATCGA
1 TGCCAATTCCATGTCCCAGACATGGTCTTACATGGGAT--CACATAACGA
* * * * * * *
70779343 AGCCGA-T--A-G-CCCAG-CTATGGTCTTACACGATG-TCTCATTATGA
1 TGCCAATTCCATGTCCCAGAC-ATGGTCTTACATG-GGATCACATAACGA
* *
70779386 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATAACGA
1 TGCCAATTCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGA
* *
70779434 TGCCAAAGT-CATGTCCCAAACATGGTCTTACATGGGATCACAT
1 TGCC-AATTCCATGTCCCAGACATGGTCTTACATGGGATCACAT
70779477 GTCACTACCA
Statistics
Matches: 143, Mismatches: 29, Indels: 24
0.73 0.15 0.12
Matches are distributed among these distances:
43 10 0.07
44 1 0.01
45 17 0.12
46 3 0.02
47 3 0.02
48 92 0.64
49 4 0.03
50 13 0.09
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (48 bp):
TGCCAATTCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGA
Found at i:70779488 original size:48 final size:48
Alignment explanation
Indices: 70779247--70779511 Score: 195
Period size: 48 Copynumber: 5.6 Consensus size: 48
70779237 AGGTAGGGTG
* * * * * *
70779247 CCAATGCCATATCCCAGATATGATCTTACATGGGACCACATAACGATG
1 CCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGATA
** *
70779295 CCAATTCCATGTCCCAGACATGGTATTACATGGGATCAC---AC-ATA
1 CCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGATA
* * * * * * * *
70779339 TCGAAGCCGATAG-CCCAG-CTATGGTCTTACACGATG-TCTCATTATGATG
1 CCAAAGCC-AT-GTCCCAGAC-ATGGTCTTACATG-GGATCACATAACGATA
* * *
70779388 CCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATAACGATG
1 CCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGATA
* * **
70779436 CCAAAGTCATGTCCCAAACATGGTCTTACATGGGATCACATGTC-ACTA
1 CCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGA-TA
* *
70779484 CCAAAGCCATATCCCAGATATGGTCTTA
1 CCAAAGCCATGTCCCAGACATGGTCTTA
70779512 TACAGGAGCT
Statistics
Matches: 168, Mismatches: 37, Indels: 24
0.73 0.16 0.10
Matches are distributed among these distances:
44 7 0.04
45 23 0.14
46 2 0.01
47 3 0.02
48 125 0.74
49 8 0.05
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (48 bp):
CCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGATA
Found at i:70788122 original size:40 final size:40
Alignment explanation
Indices: 70788028--70788332 Score: 205
Period size: 40 Copynumber: 7.6 Consensus size: 40
70788018 TATTCGAATG
* * *
70788028 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCC-GGCTAAGAT-CCGAAGGCATTTGTGCGAGTTGACT
* *
70788069 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGG-CTAAGATCCGAAGGCATTTGTGCGAGTTGACT
* * * * *
70788109 ATATCCAGGCTAAGACCCGAAGGCATTTTTGCTAG-CGATT
1 ATATCC-GGCTAAGATCCGAAGGCATTTGTGCGAGTTGACT
* *
70788149 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGG-CTAAGATCCGAAGGCATTTGTGCGAGTTGACT
* * * * *
70788189 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCTAG-CGATT
1 ATA-TCCGGCTAAGATCCGAAGGCATTTGTGCGAGTTGACT
* * * * *
70788229 ATATCCAAGCTAA-AACTCGAAGGCATTTGTGCTAG-CGATT
1 ATATCC-GGCTAAGATC-CGAAGGCATTTGTGCGAGTTGACT
* * *
70788269 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAG-TGACC
1 ATATCC-GGCTAAGAT-CCGAAGGCATTTGTGCGAGTTGACT
* *
70788309 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCC-GGCTAAGATCCGAAGGC
70788333 CTTGTGCAAG
Statistics
Matches: 213, Mismatches: 38, Indels: 27
0.77 0.14 0.10
Matches are distributed among these distances:
39 8 0.04
40 169 0.79
41 35 0.16
42 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGCTAAGATCCGAAGGCATTTGTGCGAGTTGACT
Found at i:70788175 original size:80 final size:80
Alignment explanation
Indices: 70788028--70788332 Score: 339
Period size: 80 Copynumber: 3.8 Consensus size: 80
70788018 TATTCGAATG
* *
70788028 ATATCCGGGCTAAGTCCCGAAGGC-TTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTT-TGCTA-GCGACTATAACCGGACTAAGATCCGAAGG
70788092 CATTCGTGCGAGTTGCT
64 CATTCGTGCGAGTTGCT
* *
70788109 ATATCCAGGCTAAGACCCGAAGGCATTTTTGCTAGCGATTATAACCGGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTTTGCTAGCGACTATAACCGGACTAAGATCCGAAGGCA
70788174 TTCGTGCGAGTTGCT
66 TTCGTGCGAGTTGCT
* * * * * *
70788189 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCC-AAGCTAA-AACTCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTTTGCTAGCGACTATAACCGGA-CTAAGATC-CGAAGG
* * * *
70788252 CATTTGTGCTAG-CGATT
64 CATTCGTGCGAGTTG-CT
* * * * * * * *
70788269 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTTTGCTAGCGACTATAACCGGACTAAGATCCGAAGGC
70788333 CTTGTGCAAG
Statistics
Matches: 194, Mismatches: 24, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
79 4 0.02
80 157 0.81
81 29 0.15
82 4 0.02
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTTTGCTAGCGACTATAACCGGACTAAGATCCGAAGGCA
TTCGTGCGAGTTGCT
Found at i:70788282 original size:120 final size:120
Alignment explanation
Indices: 70788028--70788368 Score: 386
Period size: 120 Copynumber: 2.9 Consensus size: 120
70788018 TATTCGAATG
* * * *
70788028 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
* * * *
70788093 ATTCGTGCGAGTTGCTATATCCAGGCTAAGACCCGAAGGCATTTTTGCTAGCGATT
65 ATTCGTGCGAGTCGCTATATCCAAGCTAAAACCCGAAGGCATTTGTGCTAGCGATT
* * * * *
70788149 ATAACCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTG-CTATATTCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGACCCGAAGG
* * * *
70788212 CATTTGTGCTAG-CGATTATATCCAAGCTAAAACTCGAAGGCATTTGTGCTAGCGATT
64 CATTCGTGCGAGTCG-CTATATCCAAGCTAAAACCCGAAGGCATTTGTGCTAGCGATT
* * * *
70788269 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * * *
70788334 TT-GTGCAAGTAGTTATATCC-AGCTAAATCCCGAAG
66 TTCGTGCGAGTCGCTATATCCAAGCTAAAACCCGAAG
70788369 ATTACTTGAG
Statistics
Matches: 184, Mismatches: 30, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
118 13 0.07
119 18 0.10
120 123 0.67
121 29 0.16
122 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (120 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCTATATCCAAGCTAAAACCCGAAGGCATTTGTGCTAGCGATT
Found at i:70791613 original size:50 final size:48
Alignment explanation
Indices: 70791521--70791651 Score: 136
Period size: 48 Copynumber: 2.7 Consensus size: 48
70791511 GTTCACCATC
* * *
70791521 TAGGCTTTTCAGATAACTTTGCCACTAAGGCTTCCCAAATAATATGCCACA
1 TAGGCTTTTTAGATAA-TTAGCCACAAAGGCTTCCCAAAT-A-ATGCCACA
** * * *
70791572 TAGTTTTTTTAGATAATTAGCCACAAAGGCTTCCTAGATAATGTCACA
1 TAGGCTTTTTAGATAATTAGCCACAAAGGCTTCCCAAATAATGCCACA
* * *
70791620 TAGGCTTTTTGGATAACTAACCACAAAGGCTT
1 TAGGCTTTTTAGATAATTAGCCACAAAGGCTT
70791652 GTTTGGTTTC
Statistics
Matches: 67, Mismatches: 13, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
48 34 0.51
49 1 0.01
50 19 0.28
51 13 0.19
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (48 bp):
TAGGCTTTTTAGATAATTAGCCACAAAGGCTTCCCAAATAATGCCACA
Found at i:70796158 original size:20 final size:18
Alignment explanation
Indices: 70796124--70796160 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
70796114 GCAACTCATA
70796124 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
70796142 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
70796161 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:70800173 original size:30 final size:30
Alignment explanation
Indices: 70800128--70800186 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
70800118 CTTAACAAGT
*
70800128 AAATTCCTCTAAAATAATAACAAAATTAAC
1 AAATGCCTCTAAAATAATAACAAAATTAAC
*
70800158 AAATGCCTTTAAAATAATAACAAAATTAA
1 AAATGCCTCTAAAATAATAACAAAATTAA
70800187 TAATAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.58, C:0.14, G:0.02, T:0.27
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAACAAAATTAAC
Found at i:70801804 original size:51 final size:51
Alignment explanation
Indices: 70801741--70801853 Score: 163
Period size: 51 Copynumber: 2.2 Consensus size: 51
70801731 CTACCTTATA
* * * * *
70801741 ACATGTAACACATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATGTT
1 ACATGTATCACATCCATAATGAACTCGAACCACTCAACGAGCTCAGATGCT
*
70801792 ACATGTATCACATCCATTATGAACTCGAACCACTCAACGAGCTCAGATGCT
1 ACATGTATCACATCCATAATGAACTCGAACCACTCAACGAGCTCAGATGCT
*
70801843 ACATATATCAC
1 ACATGTATCAC
70801854 GAACTTGGAC
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (51 bp):
ACATGTATCACATCCATAATGAACTCGAACCACTCAACGAGCTCAGATGCT
Found at i:70801871 original size:42 final size:43
Alignment explanation
Indices: 70801812--70801920 Score: 148
Period size: 43 Copynumber: 2.6 Consensus size: 43
70801802 CATCCATTAT
*
70801812 GAACTCGAACCACTCAACGAGCTCAGATGCT-ACATATATCAC
1 GAACTCGGACCACTCAACGAGCTCAGATGCTCACATATATCAC
* * * *
70801854 GAACTTGGACCACTCAACAAGTTCAGATTCTCACATATATCAC
1 GAACTCGGACCACTCAACGAGCTCAGATGCTCACATATATCAC
* *
70801897 GAGCTCGGACCACTCAATGAGCTC
1 GAACTCGGACCACTCAACGAGCTC
70801921 GGATTTTTTA
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
42 26 0.46
43 30 0.54
ACGTcount: A:0.33, C:0.30, G:0.16, T:0.21
Consensus pattern (43 bp):
GAACTCGGACCACTCAACGAGCTCAGATGCTCACATATATCAC
Found at i:70801907 original size:43 final size:42
Alignment explanation
Indices: 70801812--70801913 Score: 141
Period size: 42 Copynumber: 2.4 Consensus size: 42
70801802 CATCCATTAT
* *
70801812 GAACTCGAACCACTCAACGAGCTCAGATGCTACATATATCAC
1 GAACTCGGACCACTCAACAAGCTCAGATGCTACATATATCAC
* * *
70801854 GAACTTGGACCACTCAACAAGTTCAGATTCTCACATATATCAC
1 GAACTCGGACCACTCAACAAGCTCAGATGCT-ACATATATCAC
*
70801897 GAGCTCGGACCACTCAA
1 GAACTCGGACCACTCAA
70801914 TGAGCTCGGA
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
42 26 0.50
43 26 0.50
ACGTcount: A:0.34, C:0.30, G:0.15, T:0.21
Consensus pattern (42 bp):
GAACTCGGACCACTCAACAAGCTCAGATGCTACATATATCAC
Found at i:70804976 original size:25 final size:24
Alignment explanation
Indices: 70804933--70804984 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
70804923 AAGTTCAAGC
70804933 GAGCCATATCAAGAAGCTCAAAAA
1 GAGCCATATCAAGAAGCTCAAAAA
* * *
70804957 GAGCCTATATCAGGACGCTCATAAA
1 GAGCC-ATATCAAGAAGCTCAAAAA
70804982 GAG
1 GAG
70804985 TTGTGTTTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.42, C:0.21, G:0.21, T:0.15
Consensus pattern (24 bp):
GAGCCATATCAAGAAGCTCAAAAA
Found at i:70806562 original size:48 final size:48
Alignment explanation
Indices: 70806486--70806622 Score: 184
Period size: 50 Copynumber: 2.8 Consensus size: 48
70806476 AGGTTATGTA
* * *
70806486 AGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATAAG
1 AGCTAGTGTAAGACCATGTATGGGACATGGCATCGGCATATATATAAG
* * *
70806534 AGCTAGTGTAAGACCATGTATGGGACATGGCATCGACACCGATATATGAG
1 AGCTAGTGTAAGACCATGTATGGGACATGGCATCGGCA--TATATATAAG
* *
70806584 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
1 AGCTAGTGTAAGACCATGTATGGGACATGGCATCGGCAT
70806623 CTTACCCTTT
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
48 35 0.45
50 42 0.55
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (48 bp):
AGCTAGTGTAAGACCATGTATGGGACATGGCATCGGCATATATATAAG
Found at i:70809572 original size:14 final size:14
Alignment explanation
Indices: 70809553--70809582 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
70809543 TACGAGCTCA
70809553 ATGCATAAATACAT
1 ATGCATAAATACAT
*
70809567 ATGCATATATACAT
1 ATGCATAAATACAT
70809581 AT
1 AT
70809583 ATGATTATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.07, T:0.33
Consensus pattern (14 bp):
ATGCATAAATACAT
Found at i:70809697 original size:30 final size:30
Alignment explanation
Indices: 70809646--70809708 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
70809636 GTTCAAATGT
* *
70809646 GATGATGTAGTATGTTGAAAATTAAATTGA
1 GATGATATAGTATGTTAAAAATTAAATTGA
*
70809676 GATGATATAGTCTGTTAAAAATTAAATTGA
1 GATGATATAGTATGTTAAAAATTAAATTGA
70809706 GAT
1 GAT
70809709 AAACATGTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.41, C:0.02, G:0.21, T:0.37
Consensus pattern (30 bp):
GATGATATAGTATGTTAAAAATTAAATTGA
Found at i:70826350 original size:45 final size:48
Alignment explanation
Indices: 70826158--70826412 Score: 187
Period size: 50 Copynumber: 5.2 Consensus size: 48
70826148 CCGGATATGA
* * * *
70826158 TCTTACACTGGCTCACA-CATCAAAGTCGATGCCATGTCCCAGACATGG
1 TCTTACACTAGCACACATC-TCGAAGCCGATGCCATGTCCCAGACATGG
* * * * * * *
70826206 TCTTACACT-GACTCTCGTATATCGAGGTCAATGCCATGTCCCAAACATGG
1 TCTTACACTAG-CACAC--ATCTCGAAGCCGATGCCATGTCCCAGACATGG
* * * ** * *
70826256 TCTTACACTAGCTCTCATCTATTGGTGCTGATGCCATGTCCCAGGCATGG
1 TCTTACACTAGCACACATC--TCGAAGCCGATGCCATGTCCCAGACATGG
* *
70826306 TCTTACACT-G-ACACATGTC-AAGCCGATGCCATGTCCCACACATGG
1 TCTTACACTAGCACACATCTCGAAGCCGATGCCATGTCCCAGACATGG
* * * *
70826351 TCTTACACTAGCTCTCATATCTCGAGGCCGATGCCATGTCCTAGACATGG
1 TCTTACACTAG--CACACATCTCGAAGCCGATGCCATGTCCCAGACATGG
70826401 TCTTACACTAGC
1 TCTTACACTAGC
70826413 TTTCATATCT
Statistics
Matches: 165, Mismatches: 30, Indels: 24
0.75 0.14 0.11
Matches are distributed among these distances:
45 30 0.18
46 2 0.01
47 1 0.01
48 20 0.12
49 7 0.04
50 104 0.63
51 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
TCTTACACTAGCACACATCTCGAAGCCGATGCCATGTCCCAGACATGG
Found at i:70826363 original size:95 final size:98
Alignment explanation
Indices: 70826184--70826409 Score: 289
Period size: 95 Copynumber: 2.3 Consensus size: 98
70826174 ACATCAAAGT
* * *
70826184 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCGTATATCGAGGTCAATGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-CACG-ATATCGAAGCCAATGCCATGTCCCA
* *
70826249 AACATGGTCTTACACTAGCTCTCATCTATTG-GTGC
64 AACATGGTCTTACACTAGCTCTCATATATCGAG-GC
* * * * *
70826284 TGATGCCATGTCCCAGGCATGGTCTTACACTGA-CAC-ATGTC-AAGCCGATGCCATGTCCCACA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACCACGATATCGAAGCCAATGCCATGTCCCAAA
*
70826346 CATGGTCTTACACTAGCTCTCATATCTCGAGGC
66 CATGGTCTTACACTAGCTCTCATATATCGAGGC
*
70826379 CGATGCCATGTCCTAGACATGGTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
70826410 AGCTTTCATA
Statistics
Matches: 111, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
95 73 0.66
96 5 0.05
98 2 0.02
100 31 0.28
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (98 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACCACGATATCGAAGCCAATGCCATGTCCCAAA
CATGGTCTTACACTAGCTCTCATATATCGAGGC
Found at i:70826423 original size:50 final size:50
Alignment explanation
Indices: 70826184--70826420 Score: 263
Period size: 50 Copynumber: 4.8 Consensus size: 50
70826174 ACATCAAAGT
* *
70826184 CGATGCCATGTCCCAGACATGGTCTTACACT-GACTCTCGTATATCGAGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCATATATCGAGGC
* * * *
70826234 CAATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATCTATTG-GTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAG-GC
* * * * * *
70826284 TGATGCCATGTCCCAGGCATGGTCTTACACT-G---ACACATGTC-AAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGC
* *
70826329 CGATGCCATGTCCCACACATGGTCTTACACTAGCTCTCATATCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGC
* *
70826379 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTTTCATAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT
70826421 CTCCCTAGCA
Statistics
Matches: 153, Mismatches: 26, Indels: 16
0.78 0.13 0.08
Matches are distributed among these distances:
45 30 0.20
46 5 0.03
49 8 0.05
50 109 0.71
51 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (50 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGC
Found at i:70827536 original size:15 final size:15
Alignment explanation
Indices: 70827516--70827547 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
70827506 TATTTTTTGT
70827516 CTCATTGACCAGCCA
1 CTCATTGACCAGCCA
*
70827531 CTCATTGACCTGCCA
1 CTCATTGACCAGCCA
70827546 CT
1 CT
70827548 AACATATTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.41, G:0.12, T:0.25
Consensus pattern (15 bp):
CTCATTGACCAGCCA
Found at i:70837349 original size:41 final size:41
Alignment explanation
Indices: 70837291--70837371 Score: 126
Period size: 41 Copynumber: 2.0 Consensus size: 41
70837281 TATCCATCTT
70837291 ATCAAAATAAAGATTTAGACGGGTATTGCTTACCTTAAAAC
1 ATCAAAATAAAGATTTAGACGGGTATTGCTTACCTTAAAAC
* * * *
70837332 ATCAAAATAAGGTTTTAGGCGGGTATTGTTTACCTTAAAA
1 ATCAAAATAAAGATTTAGACGGGTATTGCTTACCTTAAAA
70837372 GTGCCAAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.32
Consensus pattern (41 bp):
ATCAAAATAAAGATTTAGACGGGTATTGCTTACCTTAAAAC
Found at i:70845352 original size:50 final size:50
Alignment explanation
Indices: 70845291--70845470 Score: 247
Period size: 50 Copynumber: 3.6 Consensus size: 50
70845281 ACATCAAAGT
* *
70845291 CGATGCCATGTCCCAGACATAGTCTTACACTGACTCTCGTATATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAGGC
* * * *
70845341 CAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCG-GTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAG-GC
* * *
70845391 CGATGCCATGTTCCAGACATGGTCTTACACT-AGCTCTCATATCTGGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTCATATATCGAGGC
70845441 CGATGCCATGTCCCAGACATGGTCTTACAC
1 CGATGCCATGTCCCAGACATGGTCTTACAC
70845471 AAGCTCACAT
Statistics
Matches: 113, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
49 1 0.01
50 111 0.98
51 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (50 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAGGC
Found at i:70845421 original size:100 final size:100
Alignment explanation
Indices: 70845289--70845470 Score: 294
Period size: 100 Copynumber: 1.8 Consensus size: 100
70845279 ACACATCAAA
*
70845289 GTCGATGCCATGTCCCAGACATAGTCTTACACT-GACTCTCGTATATCGAGGCCAATGCCATGTC
1 GTCGATGCCATGTCCCAGACATAGTCTTACACTAG-CTCTCATATATCGAGGCCAATGCCATGTC
70845353 CCAGACATGGTCTTACACTGGCTCTCATCTATCGGT
65 CCAGACATGGTCTTACACTGGCTCTCATCTATCGGT
* * * * *
70845389 GTCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCATATCTGGAGGCCGATGCCATGTCC
1 GTCGATGCCATGTCCCAGACATAGTCTTACACTAGCTCTCATATATCGAGGCCAATGCCATGTCC
70845454 CAGACATGGTCTTACAC
66 CAGACATGGTCTTACAC
70845471 AAGCTCACAT
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
100 74 0.99
101 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (100 bp):
GTCGATGCCATGTCCCAGACATAGTCTTACACTAGCTCTCATATATCGAGGCCAATGCCATGTCC
CAGACATGGTCTTACACTGGCTCTCATCTATCGGT
Found at i:70849847 original size:20 final size:20
Alignment explanation
Indices: 70849824--70849861 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
70849814 ATTTACTCGC
*
70849824 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
70849844 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
70849862 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:70856936 original size:20 final size:20
Alignment explanation
Indices: 70856913--70856950 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
70856903 ATTTATTCGC
*
70856913 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
70856933 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
70856951 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:70868394 original size:41 final size:42
Alignment explanation
Indices: 70868328--70868432 Score: 122
Period size: 41 Copynumber: 2.5 Consensus size: 42
70868318 CTTTTTGTTA
* * * * *
70868328 AGCTCTTACGAGCTTCTGTTTAACTCATATGAGTTTCCGTTT
1 AGCTCTTATGAGCTTCTATTCAACTCATATGAGTTTCCATTC
* *
70868370 AGCTCTT-TGAGCTTCTATTCAACTCTTATGAGTTTCTATTC
1 AGCTCTTATGAGCTTCTATTCAACTCATATGAGTTTCCATTC
* *
70868411 ATCTCTTATGAGCTTCCATTCA
1 AGCTCTTATGAGCTTCTATTCA
70868433 GCTCTTACGA
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
41 33 0.62
42 20 0.38
ACGTcount: A:0.20, C:0.23, G:0.13, T:0.44
Consensus pattern (42 bp):
AGCTCTTATGAGCTTCTATTCAACTCATATGAGTTTCCATTC
Found at i:70868406 original size:21 final size:21
Alignment explanation
Indices: 70868330--70868512 Score: 131
Period size: 21 Copynumber: 8.9 Consensus size: 21
70868320 TTTTGTTAAG
* *
70868330 CTCTTACGAGCTTCTGTTTAA
1 CTCTTATGAGCTTCTGTTCAA
* * * * *
70868351 CTCATATGAGTTTCCGTTTAG
1 CTCTTATGAGCTTCTGTTCAA
*
70868372 CTCTT-TGAGCTTCTATTCAA
1 CTCTTATGAGCTTCTGTTCAA
* * *
70868392 CTCTTATGAGTTTCTATTCAT
1 CTCTTATGAGCTTCTGTTCAA
** *
70868413 CTCTTATGAGCTTCCATTCAG
1 CTCTTATGAGCTTCTGTTCAA
* *
70868434 CTCTTACGAGCTTTTGTTCAA
1 CTCTTATGAGCTTCTGTTCAA
* * * *
70868455 CCCTTATGGGTTTCTG-TCTAG
1 CTCTTATGAGCTTCTGTTC-AA
*
70868476 CTCTTATGAGCTTCTGTTCAG
1 CTCTTATGAGCTTCTGTTCAA
*
70868497 CT-TT-CGAGCTTCTGTT
1 CTCTTATGAGCTTCTGTT
70868513 AATGATGTAC
Statistics
Matches: 128, Mismatches: 31, Indels: 8
0.77 0.19 0.05
Matches are distributed among these distances:
19 11 0.09
20 19 0.15
21 96 0.75
22 2 0.02
ACGTcount: A:0.16, C:0.23, G:0.16, T:0.44
Consensus pattern (21 bp):
CTCTTATGAGCTTCTGTTCAA
Found at i:70868461 original size:63 final size:62
Alignment explanation
Indices: 70868332--70868512 Score: 186
Period size: 63 Copynumber: 2.9 Consensus size: 62
70868322 TTGTTAAGCT
* * * * * * * * * *
70868332 CTTACGAGCTTCTGTTTAACTCATATGAGTTTCCGTTTAGCTCTTTGAGCTTCTATTCAACT
1 CTTATGAGTTTCTGTCTAGCTCTTATGAGCTTCCGTTCAGCTCTTCGAGCTTCTGTTCAACC
* * * *
70868394 CTTATGAGTTTCTAT-TCATCTCTTATGAGCTTCCATTCAGCTCTTACGAGCTTTTGTTCAACC
1 CTTATGAGTTTCTGTCT-AGCTCTTATGAGCTTCCGTTCAGCTCTT-CGAGCTTCTGTTCAACC
* *
70868457 CTTATGGGTTTCTGTCTAGCTCTTATGAGCTTCTGTTCAGCT-TTCGAGCTTCTGTT
1 CTTATGAGTTTCTGTCTAGCTCTTATGAGCTTCCGTTCAGCTCTTCGAGCTTCTGTT
70868513 AATGATGTAC
Statistics
Matches: 98, Mismatches: 18, Indels: 7
0.80 0.15 0.06
Matches are distributed among these distances:
61 12 0.12
62 37 0.38
63 48 0.49
64 1 0.01
ACGTcount: A:0.17, C:0.23, G:0.16, T:0.44
Consensus pattern (62 bp):
CTTATGAGTTTCTGTCTAGCTCTTATGAGCTTCCGTTCAGCTCTTCGAGCTTCTGTTCAACC
Found at i:70869877 original size:20 final size:18
Alignment explanation
Indices: 70869840--70869890 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
70869830 CTATAGCAAC
70869840 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
70869857 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
70869877 TTACAACTTTACAA
1 TCACAA-TTTACAA
70869891 AATAGCCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:70873326 original size:31 final size:31
Alignment explanation
Indices: 70873268--70873326 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
70873258 TGTCCCCTAT
*
70873268 TTTTAGAATTTTTTTAAAAATAGCCCTAAAC
1 TTTTAGAATTTGTTTAAAAATAGCCCTAAAC
* *
70873299 TTTTAGAA-TTGTTTCAAATTAGTCCCTA
1 TTTTAGAATTTGTTTAAAAATAG-CCCTA
70873327 CCTATTTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 11 0.46
31 13 0.54
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.44
Consensus pattern (31 bp):
TTTTAGAATTTGTTTAAAAATAGCCCTAAAC
Found at i:70876571 original size:11 final size:11
Alignment explanation
Indices: 70876557--70876581 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
70876547 TACATACATA
70876557 ATATATAATAT
1 ATATATAATAT
70876568 ATATATAATAT
1 ATATATAATAT
70876579 ATA
1 ATA
70876582 AATGATAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
ATATATAATAT
Found at i:70876640 original size:20 final size:19
Alignment explanation
Indices: 70876544--70876644 Score: 82
Period size: 18 Copynumber: 5.3 Consensus size: 19
70876534 AATAACATTA
70876544 AAATACATACATAATATAT
1 AAATACATACATAATATAT
* *
70876563 -AATATATATATAATATAT
1 AAATACATACATAATATAT
* *
70876581 AAAT-GATA-ATAATATAA
1 AAATACATACATAATATAT
* * *
70876598 AAAAACTATTCATACGCTATAT
1 AAATAC-ATACATA--ATATAT
70876620 AAATACATACATATATATAT
1 AAATACATACATA-ATATAT
70876640 AAATA
1 AAATA
70876645 ATAAGGATGT
Statistics
Matches: 63, Mismatches: 13, Indels: 11
0.72 0.15 0.13
Matches are distributed among these distances:
17 11 0.17
18 19 0.30
19 5 0.08
20 13 0.21
21 6 0.10
22 9 0.14
ACGTcount: A:0.56, C:0.08, G:0.02, T:0.34
Consensus pattern (19 bp):
AAATACATACATAATATAT
Found at i:70876732 original size:14 final size:15
Alignment explanation
Indices: 70876705--70876752 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 15
70876695 TAATGTTAAA
* *
70876705 ATATATACATAATA-
1 ATATATATAAAATAC
70876719 ATATATATAAAATAC
1 ATATATATAAAATAC
70876734 A-ATAT-TAAAA-AC
1 ATATATATAAAATAC
70876746 ATATATA
1 ATATATA
70876753 CATAATATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
12 3 0.10
13 9 0.31
14 16 0.55
15 1 0.03
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.33
Consensus pattern (15 bp):
ATATATATAAAATAC
Found at i:70876773 original size:24 final size:24
Alignment explanation
Indices: 70876741--70876786 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
70876731 TACAATATTA
70876741 AAAACATATATACATAATATATACG
1 AAAACATATATACAT-ATATATACG
*
70876766 AAAA-ATATATAGATATATATA
1 AAAACATATATACATATATATA
70876787 ATATAATAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 7 0.35
24 9 0.45
25 4 0.20
ACGTcount: A:0.59, C:0.07, G:0.04, T:0.30
Consensus pattern (24 bp):
AAAACATATATACATATATATACG
Found at i:70876788 original size:30 final size:29
Alignment explanation
Indices: 70876748--70876822 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 29
70876738 TTAAAAACAT
* *
70876748 ATATACATAATATATACGAAAAATATATAG
1 ATATATATAATATATA-GAAAAATATATAC
* *
70876778 ATATATATAATATAATAGTAAAATATTTAC
1 ATATATATAATAT-ATAGAAAAATATATAC
70876808 ATAATATATAA-ATAT
1 AT-ATATATAATATAT
70876823 TAAGAATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
29 2 0.05
30 26 0.67
31 11 0.28
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.36
Consensus pattern (29 bp):
ATATATATAATATATAGAAAAATATATAC
Done.