Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 213 of 235
Found at i:72343179 original size:46 final size:44
Alignment explanation
Indices: 72343120--72343234 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
72343110 ACAGGACAGA
* *
72343120 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
72343166 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
72343210 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
72343235 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:72343215 original size:44 final size:45
Alignment explanation
Indices: 72343120--72343253 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
72343110 ACAGGACAGA
* *
72343120 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
72343166 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
72343210 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
72343254 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:72354631 original size:205 final size:206
Alignment explanation
Indices: 72353970--72354895 Score: 1370
Period size: 206 Copynumber: 4.5 Consensus size: 206
72353960 GTAGATCTGG
* *
72353970 CTGAAGCAAGATCCAAGATGGTTTGGCATCTTTGTGCTTACAAGGAGCAAATCGAAGACATATCT
1 CTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCT
* * * *
72354035 GATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAAATAATTTGGCATCTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * * * * *
72354100 AGAACAAATTGAAGTTTGGTGTCTTCATATTCGACGAAGGGCAGACACATAGCATATCCAACCTT
130 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCCAGCCTT
72354165 CAGATGTTTATA
195 CAGATGTTTATA
* * *
72354177 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTACTTACAATGAGCAAATCAAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
* * *
72354242 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATATCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
*
72354307 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCCAGCCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCCAGCCTTC
72354372 AGATGTTTATA
196 AGATGTTTATA
* * * *
72354383 CTGAAGCAGATCCAATATGGTTTGGTATCCTTGTACTTACAAGGAGCAAATTGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
* * *
72354448 ATTTGGCTTTCACGTGATTACGTTGAAGCAAATCTAAGATGATTTGACATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * * * ** * *
72354513 GAACAAATCAAAGTCTGGCATCTCCA-CTTCGATGGAGAATAGATACATAGCAGATCCAGCCTTT
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCCAGCCTTC
72354577 AGATGTTTATA
196 AGATGTTTATA
* * *
72354588 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGAAAATCGAAGACATTGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
* *
72354653 ATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGGTGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * *
72354718 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACTTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCCAGCCTTC
* * *
72354783 AGACGATTAGA
196 AGATGTTTATA
* * *
72354794 CTGAAGTAGAT-CAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCAG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
*
72354858 ATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAG
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAG
72354896 CATCTCTATA
Statistics
Matches: 652, Mismatches: 66, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
205 271 0.42
206 374 0.57
207 7 0.01
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCCAGCCTTC
AGATGTTTATA
Found at i:72354741 original size:411 final size:412
Alignment explanation
Indices: 72353970--72354895 Score: 1370
Period size: 411 Copynumber: 2.2 Consensus size: 412
72353960 GTAGATCTGG
* *
72353970 CTGAAGCAAGATCCAAGATGGTTTGGCATCTTTGTGCTTACAAGGAGCAAATCGAAGACATATCT
1 CTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCT
* * * * *
72354035 GATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAAATAATTTGGCATCTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGATTACGCTGAAGCAAATCTAAGATAATTTGACATCTCTGTATTGTCAG
** * ** * ** *
72354100 AGAACAAATTGAAGTTTGGTGTCTTCATATTCGACGAAGGGCAGACACATAGCATATCCAACCTT
130 AGAACAAATCAAAGTCTGGCATCTCCATATTCGACGAAGAACAGACACATAGCAGATCCAACCTT
* *
72354165 CAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTACTTACAATGAGCAAATCA
195 CAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTACTTACAAGGAGAAAATCA
* *
72354230 AAGACATAGCTGATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATATC
260 AAGACATAGCTGATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATATC
*
72354295 TGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCA
325 TGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCA
* * * *
72354360 GATCCAGCCTTCAGATGTTTATA
390 GATCCAACCTTCAGACGATTAGA
* * * *
72354383 CTGAAGCAGATCCAATATGGTTTGGTATCCTTGTACTTACAAGGAGCAAATTGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
* *
72354448 ATTTGGCTTTCACGTGATTACGTTGAAGCAAATCTAAGATGATTTGACATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGATTACGCTGAAGCAAATCTAAGATAATTTGACATCTCTGTATTGTCAGA
* * * * * * *
72354513 GAACAAATCAAAGTCTGGCATCTCCA-CTTCGATGGAGAATAGATACATAGCAGATCCAGCCTTT
131 GAACAAATCAAAGTCTGGCATCTCCATATTCGACGAAGAACAGACACATAGCAGATCCAACCTTC
* * *
72354577 AGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGAAAATCGA
196 AGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTACTTACAAGGAGAAAATCAA
* * * *
72354642 AGACATTGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGGTGATTTGGCATCTCT
261 AGACATAGCTGATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATATCT
72354707 GTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAG
326 GTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAG
* *
72354772 ATCTAACTTTCAGACGATTAGA
391 ATCCAACCTTCAGACGATTAGA
* * *
72354794 CTGAAGTAGAT-CAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCAG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
*
72354858 ATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAG
66 ATTTGGCTTTCACGTGATTACGCTGAAGCAAATCTAAG
72354896 CATCTCTATA
Statistics
Matches: 457, Mismatches: 56, Indels: 3
0.89 0.11 0.01
Matches are distributed among these distances:
410 83 0.18
411 237 0.52
412 130 0.28
413 7 0.02
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (412 bp):
CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGATTACGCTGAAGCAAATCTAAGATAATTTGACATCTCTGTATTGTCAGA
GAACAAATCAAAGTCTGGCATCTCCATATTCGACGAAGAACAGACACATAGCAGATCCAACCTTC
AGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTACTTACAAGGAGAAAATCAA
AGACATAGCTGATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATATCT
GTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAG
ATCCAACCTTCAGACGATTAGA
Found at i:72356712 original size:11 final size:11
Alignment explanation
Indices: 72356698--72356905 Score: 55
Period size: 11 Copynumber: 18.4 Consensus size: 11
72356688 AACCCTATTT
72356698 TTATATTTATA
1 TTATATTTATA
72356709 TTATATATT-TA
1 TTATAT-TTATA
*
72356720 TTCTA-TTAT-
1 TTATATTTATA
*
72356729 GTATTATTTATA
1 TTA-TATTTATA
72356741 -T-TA-TTATA
1 TTATATTTATA
72356749 TTATTATTT-T-
1 TTA-TATTTATA
* *
72356759 TCACTAATTATTA
1 TTA-TATTTA-TA
*
72356772 TTAT-TTTACA
1 TTATATTTATA
72356782 TTATTATTTATA
1 TTA-TATTTATA
72356794 -TATTATTGTTATA
1 TTA-TA-T-TTATA
* * *
72356807 TTTTTACTTGTA
1 -TTATATTTATA
72356819 TTATATATT-TA
1 TTATAT-TTATA
72356830 TTAATTATTTATA
1 TT-A-TATTTATA
*
72356843 TGTAT-TATATA
1 T-TATATTTATA
* *
72356854 TTATATTCACA
1 TTATATTTATA
72356865 TATATACTTTCATA
1 T-TATA-TTT-ATA
72356879 TTATATATTATAA
1 TTATAT-TTAT-A
72356892 TTAT-TTTATA
1 TTATATTTATA
72356902 TTAT
1 TTAT
72356906 TATGTCATTT
Statistics
Matches: 147, Mismatches: 21, Indels: 59
0.65 0.09 0.26
Matches are distributed among these distances:
8 5 0.03
9 6 0.04
10 21 0.14
11 51 0.35
12 30 0.20
13 27 0.18
14 6 0.04
15 1 0.01
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (11 bp):
TTATATTTATA
Found at i:72356715 original size:13 final size:13
Alignment explanation
Indices: 72356699--72356905 Score: 56
Period size: 13 Copynumber: 15.1 Consensus size: 13
72356689 ACCCTATTTT
72356699 TATATTTATATTA
1 TATATTTATATTA
72356712 TATATTTAT-TCTA
1 TATATTTATAT-TA
*
72356725 T-TATGTATTATT-
1 TATATTTA-TATTA
72356737 TATATTATTATATTA
1 TATA-T-TTATATTA
*
72356752 TTATTTTTCACTAATTA
1 -TATATTT-A-T-ATTA
*
72356769 TTATTATTTTACATTA
1 -TA-TA-TTTATATTA
72356785 T-TATTTATA-TA
1 TATATTTATATTA
72356796 T-TATTGTTATATT-
1 TATA-T-TTATATTA
* * *
72356809 TTTACTTGTATTA
1 TATATTTATATTA
72356822 TATATTTATTAATTA
1 TATATTTA-T-ATTA
* * *
72356837 TTTATATGTATTA
1 TATATTTATATTA
*
72356850 TATATTATATTCACATA
1 TATATT-TA-T-A-TTA
72356867 TATACTTTCATATTA
1 TATA-TTT-ATATTA
*
72356882 TATA-TTATAAT-
1 TATATTTATATTA
72356893 TAT-TTTATATTA
1 TATATTTATATTA
72356905 T
1 T
72356906 TATGTCATTT
Statistics
Matches: 145, Mismatches: 21, Indels: 57
0.65 0.09 0.26
Matches are distributed among these distances:
11 14 0.10
12 24 0.17
13 39 0.27
14 14 0.10
15 21 0.14
16 10 0.07
17 15 0.10
18 5 0.03
19 3 0.02
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.60
Consensus pattern (13 bp):
TATATTTATATTA
Found at i:72356728 original size:27 final size:24
Alignment explanation
Indices: 72356701--72356997 Score: 64
Period size: 24 Copynumber: 12.4 Consensus size: 24
72356691 CCTATTTTTA
*
72356701 TATTTATATTA-TATATT-TATTC
1 TATTTATATTATTATATTATATTT
*
72356723 TA-TTAT-GTATTAT-TTATATTAT
1 TATTTATATTATTATATTATATT-T
* *
72356745 TATATTATTATTTTTCACTAATTAT-TAT
1 TAT-TTA-TATTATT-A-T-ATTATATTT
* *
72356773 TATTTTACATTATTAT-TTATATAT
1 TA-TTTATATTATTATATTATATTT
*
72356797 TATTGTTATATT-TT-TACTTGTATTAT
1 TA-T-TTATATTATTATA-TTATATT-T
* *
72356823 ATATTTAT-TAATTAT-TTATA-TG
1 -TATTTATATTATTATATTATATTT
* *
72356845 TA-TTATA-TATTATATTCACATATA
1 TATTTATATTATTATATT-ATAT-TT
*
72356869 TACTTTCATATTA-TATATTATA-AT
1 TA-TTT-ATATTATTATATTATATTT
* *
72356893 TATTTTATATTATTAT-GT-CATTT
1 TA-TTTATATTATTATATTATATTT
*
72356916 T-TTTATACTATTATATT-T-TTT
1 TATTTATATTATTATATTATATTT
*
72356937 TATCTATATATTATTATCATTTAAATTT
1 TAT-T-TATATTATTAT-A-TTATATTT
* *
72356965 TAGCTTGTATTA-TATACTTAT-TTT
1 TA-TTTATATTATTATA-TTATATTT
72356989 TATTTATAT
1 TATTTATAT
72356998 GTTAATAATT
Statistics
Matches: 201, Mismatches: 34, Indels: 79
0.64 0.11 0.25
Matches are distributed among these distances:
20 13 0.06
21 31 0.15
22 9 0.04
23 21 0.10
24 43 0.21
25 24 0.12
26 16 0.08
27 23 0.11
28 15 0.07
29 2 0.01
30 4 0.02
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (24 bp):
TATTTATATTATTATATTATATTT
Found at i:72356742 original size:16 final size:16
Alignment explanation
Indices: 72356701--72356859 Score: 68
Period size: 16 Copynumber: 9.9 Consensus size: 16
72356691 CCTATTTTTA
72356701 TATTTATATTATATAT
1 TATTTATATTATATAT
* *
72356717 T-TATTCTATTATGTAT
1 TAT-TTATATTATATAT
72356733 TATTTATATTATTATAT
1 TATTTATATTA-TATAT
*
72356750 TA-TTAT-TTTTCACTAAT
1 TATTTATATTAT-A-T-AT
* *
72356767 TA-TTATTATTTTACAT
1 TATTTA-TATTATATAT
72356783 TA-TTAT-TTATATAT
1 TATTTATATTATATAT
*
72356797 TATTGT-TA-TAT-TTT
1 TATT-TATATTATATAT
* *
72356811 TACTTGTATTATATATT
1 TATTTATATTATATA-T
*
72356828 TATTAATTATT-TATAT
1 TATTTA-TATTATATAT
72356844 GTATTATATATTATAT
1 -TATT-TATATTATAT
72356860 TCACATATAT
Statistics
Matches: 109, Mismatches: 15, Indels: 36
0.68 0.09 0.22
Matches are distributed among these distances:
13 1 0.01
14 16 0.15
15 13 0.12
16 35 0.32
17 30 0.28
18 10 0.09
19 4 0.04
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (16 bp):
TATTTATATTATATAT
Found at i:72356745 original size:62 final size:62
Alignment explanation
Indices: 72356625--72356745 Score: 135
Period size: 62 Copynumber: 2.0 Consensus size: 62
72356615 ACTTCAAATC
* * *
72356625 TAACCCTATATATTTATTTATATATATATATAATTTTTTATATTGTTATTTGTTTTATTTTT
1 TAACCCTATATATTTATTTATATATATATATAATTTTTTATATTATTATTTATATTATTTTT
72356687 TAACCCTAT-T-TTTATATT-TATAT-TATAT-ATTTATTCTATTATGTATTATTTATATTATT
1 TAACCCTATATATTTAT-TTATATATATATATAATTT-TT-TA-TAT-TATTATTTATATTATT
72356746 ATATTATTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 10
0.80 0.05 0.16
Matches are distributed among these distances:
58 4 0.08
59 7 0.14
60 12 0.24
61 6 0.12
62 22 0.43
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (62 bp):
TAACCCTATATATTTATTTATATATATATATAATTTTTTATATTATTATTTATATTATTTTT
Found at i:72356748 original size:40 final size:40
Alignment explanation
Indices: 72356693--72356797 Score: 116
Period size: 41 Copynumber: 2.7 Consensus size: 40
72356683 TTTTTAACCC
72356693 TATT-TTTATA-T-TTATATTATATATTTATT-CT-ATTAT
1 TATTATTTATATTATTATATTATATATTT-TTACTAATTAT
72356729 GTATTATTTATATTATTATATTAT-TATTTTTCACTAATTAT
1 -TATTATTTATATTATTATATTATATATTTTT-ACTAATTAT
*
72356770 TATTATTTTACATTATTAT-TTATATATT
1 TATTA-TTTATATTATTATATTATATATT
72356798 ATTGTTATAT
Statistics
Matches: 59, Mismatches: 1, Indels: 12
0.82 0.01 0.17
Matches are distributed among these distances:
37 4 0.07
38 8 0.14
39 6 0.10
40 20 0.34
41 21 0.36
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (40 bp):
TATTATTTATATTATTATATTATATATTTTTACTAATTAT
Found at i:72356870 original size:28 final size:28
Alignment explanation
Indices: 72356815--72356870 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
72356805 TATTTTTACT
* *
72356815 TGTATTATATATTTATTAATTATTTATA
1 TGTATTATATATTTATTAATCATATATA
*
72356843 TGTATTATATATTATATTCA-CATATATA
1 TGTATTATATATT-TATTAATCATATATA
72356871 CTTTCATATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 19 0.79
29 5 0.21
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.55
Consensus pattern (28 bp):
TGTATTATATATTTATTAATCATATATA
Found at i:72356907 original size:13 final size:13
Alignment explanation
Indices: 72356767--72356908 Score: 59
Period size: 13 Copynumber: 10.7 Consensus size: 13
72356757 TTTCACTAAT
72356767 TATTATTATTTTA
1 TATTATTATTTTA
*
72356780 CATTATTA-TTTA
1 TATTATTATTTTA
72356792 TA-TATTATTGTTA
1 TATTATTATT-TTA
* * *
72356805 TATTTTTA-CTTG
1 TATTATTATTTTA
72356817 TATTA-TATATTTA
1 TATTATTAT-TTTA
*
72356830 T-TAATTA-TTTA
1 TATTATTATTTTA
72356841 TATGTATTATATATTA
1 TAT-TATTAT-T-TTA
72356857 TATTCACATATATACTTTCA
1 TATT---AT-TAT--TTT-A
*
72356877 TATTA-TATATTA
1 TATTATTATTTTA
72356889 TA--ATTATTTTA
1 TATTATTATTTTA
72356900 TATTATTAT
1 TATTATTAT
72356909 GTCATTTTTT
Statistics
Matches: 96, Mismatches: 13, Indels: 40
0.64 0.09 0.27
Matches are distributed among these distances:
10 1 0.01
11 20 0.21
12 18 0.19
13 28 0.29
14 4 0.04
15 5 0.05
16 6 0.06
17 1 0.01
18 2 0.02
19 5 0.05
20 6 0.06
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (13 bp):
TATTATTATTTTA
Found at i:72356937 original size:21 final size:20
Alignment explanation
Indices: 72356879--72356958 Score: 67
Period size: 21 Copynumber: 3.9 Consensus size: 20
72356869 TACTTTCATA
*
72356879 TTATATATTATA--ATTATT
1 TTATATATTATATCATTTTT
*
72356897 TTATATTATTATGTCATTTTT
1 TTATA-TATTATATCATTTTT
*
72356918 TTATACTATTATAT-TTTTTT
1 TTATA-TATTATATCATTTTT
72356938 ATCTATATATTATTATCATTT
1 -T-TATATATTA-TATCATTT
72356959 AAATTTTAGC
Statistics
Matches: 49, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
18 5 0.10
19 6 0.12
20 5 0.10
21 23 0.47
22 7 0.14
23 3 0.06
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.64
Consensus pattern (20 bp):
TTATATATTATATCATTTTT
Found at i:72357232 original size:17 final size:16
Alignment explanation
Indices: 72357209--72357267 Score: 59
Period size: 17 Copynumber: 3.6 Consensus size: 16
72357199 CCAATATATT
72357209 TTATATTTTTATATAA
1 TTATATTTTTATATAA
*
72357225 TTATTATTCTTATA-AA
1 TTA-TATTTTTATATAA
72357241 -TATACTTTTTATTATATA
1 TTATA-TTTTTA-TATA-A
72357259 TTATATTTT
1 TTATATTTT
72357268 AAATCTATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 2 0.06
15 7 0.20
16 7 0.20
17 10 0.29
18 5 0.14
19 4 0.11
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (16 bp):
TTATATTTTTATATAA
Found at i:72359263 original size:15 final size:16
Alignment explanation
Indices: 72359233--72359277 Score: 65
Period size: 15 Copynumber: 2.8 Consensus size: 16
72359223 TAATAAAAAT
72359233 ATAATTTTATTATTTTA
1 ATAA-TTTATTATTTTA
72359250 ATAATTTA-TATTTTA
1 ATAATTTATTATTTTA
*
72359265 ATAATTTTTTATT
1 ATAATTTATTATT
72359278 ATTTTAGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 14 0.54
16 8 0.31
17 4 0.15
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
ATAATTTATTATTTTA
Found at i:72362645 original size:21 final size:21
Alignment explanation
Indices: 72362621--72362660 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
72362611 ACTTGAGGGA
*
72362621 AAAGTTTGAGTGAATACTTCC
1 AAAGTTTGAGTGAACACTTCC
72362642 AAAGTTTGAGTGAACACTT
1 AAAGTTTGAGTGAACACTT
72362661 GAGAGACCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (21 bp):
AAAGTTTGAGTGAACACTTCC
Found at i:72375933 original size:5 final size:5
Alignment explanation
Indices: 72375923--72375954 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
72375913 AAAGGTGTGA
72375923 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
72375955 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:72375948 original size:9 final size:9
Alignment explanation
Indices: 72375924--72375954 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
72375914 AAGGTGTGAA
72375924 AAATAAAAT
1 AAATAAAAT
72375933 AAAATAAAAT
1 -AAATAAAAT
72375943 AAATAAAAT
1 AAATAAAAT
72375952 AAA
1 AAA
72375955 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:72381520 original size:56 final size:56
Alignment explanation
Indices: 72381434--72381547 Score: 165
Period size: 56 Copynumber: 2.0 Consensus size: 56
72381424 ATAATTATGA
* *
72381434 TATTAAATTATATCTATAATTGGGTGTGAAATTTTACAAAAGCATTTTGAGTATAT
1 TATTAAATTATATCTATAATTGGGTATGAAATTGTACAAAAGCATTTTGAGTATAT
* * * * *
72381490 TATTGAATTATATTTGTCATTGGGTATGAAATTGTACAGAAGCATTTTGAGTATAT
1 TATTAAATTATATCTATAATTGGGTATGAAATTGTACAAAAGCATTTTGAGTATAT
72381546 TA
1 TA
72381548 GTCGACATTT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 51 1.00
ACGTcount: A:0.35, C:0.05, G:0.17, T:0.43
Consensus pattern (56 bp):
TATTAAATTATATCTATAATTGGGTATGAAATTGTACAAAAGCATTTTGAGTATAT
Found at i:72385975 original size:41 final size:41
Alignment explanation
Indices: 72385903--72385982 Score: 106
Period size: 41 Copynumber: 2.0 Consensus size: 41
72385893 GTTTACTGAT
* ** ** *
72385903 TAATGTATATCTGATACTGTTACTGTGATGGGCTCAGGCTC
1 TAATGCATATCTGATACTGAAACTGAAATGGGCTAAGGCTC
72385944 TAATGCATATCTGATACTGAAACTGAAATGGGCTAAGGC
1 TAATGCATATCTGATACTGAAACTGAAATGGGCTAAGGC
72385983 CCGAACTGCT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (41 bp):
TAATGCATATCTGATACTGAAACTGAAATGGGCTAAGGCTC
Found at i:72399309 original size:27 final size:27
Alignment explanation
Indices: 72399248--72399309 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 27
72399238 GTTCGACGGG
* * *
72399248 ACATTAAACACGGGATAGTCAGCCGAG
1 ACATTAAACAAGGGATAGTCAGCCCAA
* *
72399275 ACACTAAACATAGGG-TAGTCTGCCCAA
1 ACATTAAACA-AGGGATAGTCAGCCCAA
72399302 ACATTAAA
1 ACATTAAA
72399310 TATGTGAATT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
27 25 0.89
28 3 0.11
ACGTcount: A:0.40, C:0.23, G:0.19, T:0.18
Consensus pattern (27 bp):
ACATTAAACAAGGGATAGTCAGCCCAA
Found at i:72403426 original size:12 final size:12
Alignment explanation
Indices: 72403409--72403435 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
72403399 TGTGTTATAT
72403409 ACGGTCGGCCAC
1 ACGGTCGGCCAC
72403421 ACGGTCGGCCAC
1 ACGGTCGGCCAC
72403433 ACG
1 ACG
72403436 CCCATGTGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.41, G:0.33, T:0.07
Consensus pattern (12 bp):
ACGGTCGGCCAC
Found at i:72412219 original size:25 final size:25
Alignment explanation
Indices: 72412191--72412241 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
72412181 CGTACGAGGA
72412191 TTCAAACACAAGACCTCCAACAAGC
1 TTCAAACACAAGACCTCCAACAAGC
*
72412216 TTCAAACACAGGACCTCCAACAAGC
1 TTCAAACACAAGACCTCCAACAAGC
72412241 T
1 T
72412242 AAGTCCTTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.41, C:0.35, G:0.10, T:0.14
Consensus pattern (25 bp):
TTCAAACACAAGACCTCCAACAAGC
Found at i:72413432 original size:45 final size:45
Alignment explanation
Indices: 72413376--72413461 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
72413366 TCCTTGACCA
* *
72413376 AGTATAAATAATTAATAGA-AAATATTATGCAATTTAGTTAAATTT
1 AGTACAAATAATTAATA-ATAAATACTATGCAATTTAGTTAAATTT
* *
72413421 AGTACAAATAATTTATAATAAATACTATGTAATTTAGTTAA
1 AGTACAAATAATTAATAATAAATACTATGCAATTTAGTTAA
72413462 TTATTTAGCA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 1 0.03
45 35 0.97
ACGTcount: A:0.49, C:0.03, G:0.08, T:0.40
Consensus pattern (45 bp):
AGTACAAATAATTAATAATAAATACTATGCAATTTAGTTAAATTT
Found at i:72415072 original size:30 final size:30
Alignment explanation
Indices: 72415037--72415097 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
72415027 ATGTTTCAAA
72415037 ATTTTCAGTCATATATCAGATATGTACCAT
1 ATTTTCAGTCATATATCAGATATGTACCAT
72415067 ATTTTCAGTCATATATCAGATATGTACCAT
1 ATTTTCAGTCATATATCAGATATGTACCAT
72415097 A
1 A
72415098 CACATGTAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.34, C:0.16, G:0.10, T:0.39
Consensus pattern (30 bp):
ATTTTCAGTCATATATCAGATATGTACCAT
Found at i:72432861 original size:40 final size:40
Alignment explanation
Indices: 72432792--72432957 Score: 271
Period size: 40 Copynumber: 4.2 Consensus size: 40
72432782 AACCCAAGTA
* * *
72432792 CCTTCGAGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72432831 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72432871 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
72432911 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72432951 CCTTCGG
1 CCTTCGG
72432958 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 12 0.10
40 107 0.90
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:72438253 original size:49 final size:49
Alignment explanation
Indices: 72438175--72438420 Score: 294
Period size: 49 Copynumber: 5.0 Consensus size: 49
72438165 GTAGTCGAAG
* * *
72438175 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * *
72438224 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AA
* * * *
72438274 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA
* * *** * *
72438324 GTTATCAGGTACGTATAGTAGCCCGCACTTAGTACTACACATGCGACCAA
1 -CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* *
72438374 CAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
72438421 TCACAATAGC
Statistics
Matches: 163, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 79 0.48
50 48 0.29
51 36 0.22
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (49 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
Found at i:72438411 original size:100 final size:99
Alignment explanation
Indices: 72438177--72438420 Score: 337
Period size: 100 Copynumber: 2.5 Consensus size: 99
72438167 AGTCGAAGCT
* * * * * *
72438177 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGT
* * *
72438242 AGCCTGCACTTAGTACTACACACGTGACCTAACC
66 AGCCCGCACTTAGTACTACACACGCGACCTAACA
* * **
72438276 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGTATA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATA
*
72438341 GTAGCCCGCACTTAGTACTACACATGCGACC-AACA
64 GTAGCCCGCACTTAGTACTACACACGCGACCTAACA
72438376 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
72438421 TCACAATAGC
Statistics
Matches: 127, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
99 39 0.31
100 48 0.38
101 40 0.31
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (99 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGT
AGCCCGCACTTAGTACTACACACGCGACCTAACA
Found at i:72442644 original size:23 final size:23
Alignment explanation
Indices: 72442616--72442663 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
72442606 ATCTTGCACA
*
72442616 CTCAGTTAACTTGTTAGTTCTTC
1 CTCAGTCAACTTGTTAGTTCTTC
72442639 CTCAGTCAACTTGTTAGTTCTTC
1 CTCAGTCAACTTGTTAGTTCTTC
72442662 CT
1 CT
72442664 TAGGCTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.17, C:0.25, G:0.12, T:0.46
Consensus pattern (23 bp):
CTCAGTCAACTTGTTAGTTCTTC
Found at i:72443780 original size:18 final size:17
Alignment explanation
Indices: 72443753--72443792 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
72443743 ATATTTTAAG
*
72443753 TATAAGATATTTATTATA
1 TATAATATA-TTATTATA
72443771 TATAATATATTATTATA
1 TATAATATATTATTATA
72443788 T-TAAT
1 TATAAT
72443793 TAATAATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 4 0.19
17 9 0.43
18 8 0.38
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
TATAATATATTATTATA
Found at i:72443822 original size:9 final size:9
Alignment explanation
Indices: 72443808--72443833 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
72443798 ATTAATTAAA
72443808 AAATAAAAG
1 AAATAAAAG
72443817 AAATAAAAG
1 AAATAAAAG
72443826 AAATAAAA
1 AAATAAAA
72443834 TAAAGAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.08, T:0.12
Consensus pattern (9 bp):
AAATAAAAG
Found at i:72443840 original size:13 final size:14
Alignment explanation
Indices: 72443817--72443846 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
72443807 AAAATAAAAG
72443817 AAATAAAAGAAATA
1 AAATAAAAGAAATA
72443831 AAAT-AAAGAAATA
1 AAATAAAAGAAATA
72443844 AAA
1 AAA
72443847 AAACAATTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (14 bp):
AAATAAAAGAAATA
Found at i:72444701 original size:22 final size:21
Alignment explanation
Indices: 72444666--72444741 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
72444656 AAAAGGTATC
* *
72444666 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
72444687 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
72444710 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
72444729 TGC-AATCATATCT
1 TACAAATCATATCT
72444742 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:72444726 original size:19 final size:19
Alignment explanation
Indices: 72444702--72444792 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
72444692 AATCATATCT
72444702 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
72444721 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
72444739 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
**
72444756 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
72444775 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
72444793 TGAAGATTAT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 15 0.23
18 16 0.24
19 35 0.53
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:72444780 original size:36 final size:36
Alignment explanation
Indices: 72444679--72444792 Score: 131
Period size: 35 Copynumber: 3.0 Consensus size: 36
72444669 AAATTAAATC
72444679 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTAC--AATCATA---TCTAAGATTG-ATATCATA
*
72444721 TCTAAGATTGCAATCATATCTAAGATTG-TATCATA
1 TCTAAGATTACAATCATATCTAAGATTGATATCATA
*
72444756 TCTAAGATTATATATCATATCTAAGATTGCATATCAT
1 TCTAAGATTACA-ATCATATCTAAGATTG-ATATCAT
72444793 TGAAGATTAT
Statistics
Matches: 66, Mismatches: 3, Indels: 10
0.84 0.04 0.13
Matches are distributed among these distances:
35 17 0.26
36 16 0.24
37 10 0.15
38 6 0.09
40 7 0.11
42 10 0.15
ACGTcount: A:0.39, C:0.15, G:0.09, T:0.38
Consensus pattern (36 bp):
TCTAAGATTACAATCATATCTAAGATTGATATCATA
Found at i:72444799 original size:36 final size:38
Alignment explanation
Indices: 72444702--72444804 Score: 144
Period size: 36 Copynumber: 2.8 Consensus size: 38
72444692 AATCATATCT
**
72444702 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
72444739 TCTAAGATTG--TATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
*
72444775 TCTAAGATTGCATATCAT-T-GAAGATTATAT
1 TCTAAGATTGCATATCATATCTAAGATTATAT
72444805 TTCCATATGA
Statistics
Matches: 60, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
35 17 0.28
36 26 0.43
37 11 0.18
38 6 0.10
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.39
Consensus pattern (38 bp):
TCTAAGATTGCATATCATATCTAAGATTATATATCATA
Found at i:72444950 original size:21 final size:21
Alignment explanation
Indices: 72444911--72444951 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
72444901 TTGGACTTTG
*
72444911 TTTTTTTTTTGGAGTTTATTA
1 TTTTTTTTTTGGAGCTTATTA
72444932 TTTTTGTTTTTGGA-CTTATT
1 TTTTT-TTTTTGGAGCTTATT
72444952 TCTAGGCCCG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.12, C:0.02, G:0.15, T:0.71
Consensus pattern (21 bp):
TTTTTTTTTTGGAGCTTATTA
Found at i:72445266 original size:44 final size:45
Alignment explanation
Indices: 72445157--72445343 Score: 214
Period size: 45 Copynumber: 4.2 Consensus size: 45
72445147 TGCTATATTT
*
72445157 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTT
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
* * **
72445202 GATCTGCTCCTCGTCTAATACAGAGACGCCCAATCTACT-TCTTC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
* * * * *
72445246 AATCTGTTCCCCATCTAATACAGAGATGCCAAATCTGTTATCTCC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
* * * * * * *
72445291 GATTTGTTCCCTGTCTAATACAGAGATGCCAAATCTGTCATATTG
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
72445336 GATCTGCT
1 GATCTGCT
72445344 TCGATGTAAA
Statistics
Matches: 117, Mismatches: 24, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
44 35 0.30
45 82 0.70
ACGTcount: A:0.25, C:0.28, G:0.15, T:0.32
Consensus pattern (45 bp):
GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
Found at i:72445277 original size:89 final size:89
Alignment explanation
Indices: 72445158--72445326 Score: 241
Period size: 89 Copynumber: 1.9 Consensus size: 89
72445148 GCTATATTTG
* **
72445158 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTTGATCTGCT-CCTCGTCTAATA
1 ATCTGCTCCCCATCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGCTCCCT-GTCTAATA
*
72445222 CAGAGACGCCCAATCTACTTCTTCA
65 CAGAGACGCCAAATCTACTTCTTCA
* * * *
72445247 ATCTGTTCCCCATCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGTTCCCTGTCTAATAC
1 ATCTGCTCCCCATCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGCTCCCTGTCTAATAC
*
72445312 AGAGATGCCAAATCT
66 AGAGACGCCAAATCT
72445327 GTCATATTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
89 67 0.96
90 3 0.04
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.31
Consensus pattern (89 bp):
ATCTGCTCCCCATCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGCTCCCTGTCTAATAC
AGAGACGCCAAATCTACTTCTTCA
Found at i:72445486 original size:78 final size:78
Alignment explanation
Indices: 72445357--72445651 Score: 414
Period size: 78 Copynumber: 3.8 Consensus size: 78
72445347 ATGTAAACAC
* * *
72445357 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTTCCCGTCTAATACAGAGATGGCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
72445422 TGGATCTGCCTT-A
66 TGGATCTG-CTTCA
** *
72445435 ATGAAGGTCTA-ATCTATTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAGTCATC
1 ATGAAGGTC-AGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
72445499 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * * *
72445513 ATGAAGGTCAGATCTGCTGTTTCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAAAACATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
72445578 TGGATCTACTTCA
66 TGGATCTGCTTCA
* * * **
72445591 ATGAAGGTCAGATCTGCTATGTATTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
72445652 TATTTCTTCG
Statistics
Matches: 191, Mismatches: 23, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
77 4 0.02
78 186 0.97
79 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:72455526 original size:17 final size:17
Alignment explanation
Indices: 72455504--72455536 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
72455494 GATATGATAC
72455504 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
72455521 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
72455537 AATCAGGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:72455537 original size:18 final size:17
Alignment explanation
Indices: 72455504--72455537 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
72455494 GATATGATAC
*
72455504 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
72455521 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
72455538 ATCAGGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:72455835 original size:23 final size:22
Alignment explanation
Indices: 72455792--72455849 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
72455782 AAAATGTATC
* *
72455792 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
72455813 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
72455836 TGCATATCATATCT
1 TACAAATCATATCT
72455850 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:72455852 original size:19 final size:19
Alignment explanation
Indices: 72455828--72455899 Score: 105
Period size: 19 Copynumber: 3.9 Consensus size: 19
72455818 AATCATATCT
72455828 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
72455847 TCTAAGATTGCA-ATTATA
1 TCTAAGATTGCATATCATA
*
72455865 TCTAATATTG--TATCATA
1 TCTAAGATTGCATATCATA
72455882 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
72455900 TGAAGATTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
17 14 0.30
18 14 0.30
19 18 0.39
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:72457697 original size:39 final size:39
Alignment explanation
Indices: 72457613--72457769 Score: 210
Period size: 39 Copynumber: 4.0 Consensus size: 39
72457603 CAAATCCAAT
* *
72457613 CACCACCAC-AAAGCATGCGGGACTTTAAGCCCGGATATAA
1 CACCAGCACGAAAGCCTGCGGGAC-TT-AGCCCGGATATAA
*
72457653 TACCAGCAC-AAAGCCTGCGGGACTTTAGCCCGGATATAA
1 CACCAGCACGAAAGCCTGCGGGAC-TTAGCCCGGATATAA
* *
72457692 CACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAAAGCCTGCGGGACTTAGCCCGGATATAA
* *
72457731 CACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAAAGCCTGCGGGACTTAGCCCGGATATAA
72457770 TTCTCCATTA
Statistics
Matches: 110, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
39 75 0.68
40 35 0.32
ACGTcount: A:0.31, C:0.30, G:0.22, T:0.17
Consensus pattern (39 bp):
CACCAGCACGAAAGCCTGCGGGACTTAGCCCGGATATAA
Found at i:72464187 original size:39 final size:38
Alignment explanation
Indices: 72464103--72464303 Score: 267
Period size: 39 Copynumber: 5.1 Consensus size: 38
72464093 CAAATCCAAT
* * * *
72464103 CACCACCACAAAGCATGCGGGACTTTAAGCCCGGATATAA
1 CACCAGCACAAAGCCTTCGGGGC-TT-AGCCCGGATATAA
* * *
72464143 TACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAA
1 CACCAGCACAAAGCCTTCGGGGC-TTAGCCCGGATATAA
72464182 CACCAGCACAAATGCCTTCGGGGCTTAGCCCGGATATAA
1 CACCAGCACAAA-GCCTTCGGGGCTTAGCCCGGATATAA
*
72464221 CACCAGCACGAATGCCTTCGGGGCTTAGCCCGGATATAA
1 CACCAGCAC-AAAGCCTTCGGGGCTTAGCCCGGATATAA
*
72464260 CACCAGCACGAATGCCTTCGGGGCTTAGCCCGGATATAA
1 CACCAGCAC-AAAGCCTTCGGGGCTTAGCCCGGATATAA
72464299 CACCA
1 CACCA
72464304 AATCATATAA
Statistics
Matches: 152, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 118 0.78
40 34 0.22
ACGTcount: A:0.29, C:0.31, G:0.23, T:0.17
Consensus pattern (38 bp):
CACCAGCACAAAGCCTTCGGGGCTTAGCCCGGATATAA
Found at i:72466312 original size:19 final size:19
Alignment explanation
Indices: 72466288--72466328 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
72466278 GTTATAATAT
*
72466288 TAATATTCCTTTAATATTA
1 TAATATTCATTTAATATTA
*
72466307 TAATATTCATTTCATATTA
1 TAATATTCATTTAATATTA
72466326 TAA
1 TAA
72466329 AACAATTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.51
Consensus pattern (19 bp):
TAATATTCATTTAATATTA
Found at i:72466738 original size:5 final size:6
Alignment explanation
Indices: 72466723--72466748 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
72466713 TTATCAACAA
72466723 AAAAAT AAAAAT AAAAAT AAAAAT AA
1 AAAAAT AAAAAT AAAAAT AAAAAT AA
72466749 TTTCTATTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:72469007 original size:19 final size:19
Alignment explanation
Indices: 72468972--72469008 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
72468962 ATGGACTTCG
**
72468972 TTTTTTTTTGGGTTTATTA
1 TTTTTTTTTGGACTTATTA
72468991 TTTTTTTTTGGACTTATT
1 TTTTTTTTTGGACTTATT
72469009 TCTGGGCCCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.11, C:0.03, G:0.14, T:0.73
Consensus pattern (19 bp):
TTTTTTTTTGGACTTATTA
Found at i:72470813 original size:145 final size:145
Alignment explanation
Indices: 72470550--72470839 Score: 544
Period size: 145 Copynumber: 2.0 Consensus size: 145
72470540 AATAGGTTCG
*
72470550 GGAGTCAGTTACATACGAGGAATGATTAGCACCCTCGCAACGCCCAAAATTGGTACCAAATTGAA
1 GGAGTCAGTTACATACGAGGAAGGATTAGCACCCTCGCAACGCCCAAAATTGGTACCAAATTGAA
72470615 TAGTTTTCTGCCTTAATGTCAAAAATTTGAAAGGATTTAAAAATAGGATCCCTTTTTTAAAACTG
66 TAGTTTTCTGCCTTAATGTCAAAAATTTGAAAGGATTTAAAAATAGGATCCCTTTTTTAAAACTG
72470680 GAATTATTTAAGTTA
131 GAATTATTTAAGTTA
* *
72470695 GGAGTCGGTTACGTACGAGGAAGGATTAGCACCCTCGCAACGCCCAAAATTGGTACCAAATTGAA
1 GGAGTCAGTTACATACGAGGAAGGATTAGCACCCTCGCAACGCCCAAAATTGGTACCAAATTGAA
*
72470760 TAGTTTTCTGTCTTAATGTCAAAAATTTGAAAGGATTTAAAAATAGGATCCCTTTTTTAAAACTG
66 TAGTTTTCTGCCTTAATGTCAAAAATTTGAAAGGATTTAAAAATAGGATCCCTTTTTTAAAACTG
72470825 GAATTATTTAAGTTA
131 GAATTATTTAAGTTA
72470840 AAAAAATCAG
Statistics
Matches: 141, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
145 141 1.00
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (145 bp):
GGAGTCAGTTACATACGAGGAAGGATTAGCACCCTCGCAACGCCCAAAATTGGTACCAAATTGAA
TAGTTTTCTGCCTTAATGTCAAAAATTTGAAAGGATTTAAAAATAGGATCCCTTTTTTAAAACTG
GAATTATTTAAGTTA
Found at i:72471220 original size:17 final size:18
Alignment explanation
Indices: 72471198--72471232 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
72471188 GATATGATAC
*
72471198 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
72471215 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
72471233 CAGGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:72471521 original size:22 final size:21
Alignment explanation
Indices: 72471486--72471561 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
72471476 AAAAGGTATC
* *
72471486 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
72471507 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
72471530 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
72471549 TGC-AATCATATCT
1 TACAAATCATATCT
72471562 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:72471578 original size:35 final size:37
Alignment explanation
Indices: 72471515--72471612 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
72471505 ATTACAAAAT
72471515 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
72471551 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
72471586 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
72471613 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:72471620 original size:17 final size:19
Alignment explanation
Indices: 72471522--72471612 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
72471512 AATCATATCT
72471522 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
72471541 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
72471559 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
72471576 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
72471595 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
72471613 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:72471769 original size:21 final size:20
Alignment explanation
Indices: 72471731--72471770 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
72471721 TTGGACTTTG
**
72471731 TTTTTTTTTTGGGTTTATTA
1 TTTTTTTTTTGGACTTATTA
72471751 TTTTTGTTTTTGGACTTATT
1 TTTTT-TTTTTGGACTTATT
72471771 TCTGGGCCCG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTTGGACTTATTA
Found at i:72472122 original size:45 final size:45
Alignment explanation
Indices: 72471963--72472236 Score: 232
Period size: 45 Copynumber: 6.1 Consensus size: 45
72471953 AGAAGGCGAT
* * * **
72471963 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACGGAGACACCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * * * * *
72472008 ACCTATTTTCTTCGATCTACTCCCTGTCTAATACAGAGACGCCGA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * *
72472053 ATTTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
72472097 ATCTGTTATCTTCGATTTGCTCCCCGTCTAATATAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * * * * * *
72472142 ATCTGTCATCTTGGATCTGCT--TCGATGTAA-ACACATGAAGGTCAG
1 ATCTGTTATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAA
* *
72472187 ATCTGTTATGTCTTCGATCTGCTCCCCATCTAATACAGAGATGCTAA
1 ATCTGTTA--TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
72472234 ATC
1 ATC
72472237 ATCTTGGATC
Statistics
Matches: 176, Mismatches: 44, Indels: 16
0.75 0.19 0.07
Matches are distributed among these distances:
43 5 0.03
44 42 0.24
45 101 0.57
47 18 0.10
48 5 0.03
49 5 0.03
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:72472404 original size:77 final size:77
Alignment explanation
Indices: 72472176--72472602 Score: 644
Period size: 77 Copynumber: 5.5 Consensus size: 77
72472166 ATGTAAACAC
* * * *
72472176 ATGAAGGTCAGATCTGTTATGTCTTCGATCTGCTCCCCATCTAATACAGA-GATGCTAAATCATC
1 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCT-CCCGTCTAATACA-ATGATGCCAAATCATC
*
72472240 TTGGATCTGTTTCA
64 TTGGATCTGCTTCA
* * * * **
72472254 ATGAAGGTCCA-ATCTGTTATGTCTTTGATCTACTCCCCGTCTAATATGGA-GATGCCAAATCAT
1 ATGAAGGT-CAGATCTGCTGTGTCTTCGATCTGCT-CCCGTCTAATA-CAATGATGCCAAATCAT
72472317 CTTGGATCTGCTTCA
63 CTTGGATCTGCTTCA
*
72472332 ATGAAGGTTAGATCTGCTGTGTCTTCGATCTGCTCCCGTCTAATACAATGATGCCAAATCATCTT
1 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCGTCTAATACAATGATGCCAAATCATCTT
72472397 GGATCTGCTTCA
66 GGATCTGCTTCA
*
72472409 ATGAAGGTTAGATCTGCTGTGTCTTCGATCTGCTCCCGTCTAATACAATGATGCCAAATCATCTT
1 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCGTCTAATACAATGATGCCAAATCATCTT
72472474 GGATCTGCTTCA
66 GGATCTGCTTCA
*
72472486 ATGAAGGTTAGATCTGCTGTGTCTTCGATCTGCTCCCGTCTAATACAATGATGCCAAATCATCTT
1 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCGTCTAATACAATGATGCCAAATCATCTT
72472551 GGATCTGCTTCA
66 GGATCTGCTTCA
*
72472563 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTACTCTCCGT
1 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTC-CCGT
72472603 TGAATATGGA
Statistics
Matches: 328, Mismatches: 16, Indels: 10
0.93 0.05 0.03
Matches are distributed among these distances:
76 1 0.00
77 227 0.69
78 98 0.30
79 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.34
Consensus pattern (77 bp):
ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCGTCTAATACAATGATGCCAAATCATCTT
GGATCTGCTTCA
Found at i:72472914 original size:78 final size:78
Alignment explanation
Indices: 72472785--72473549 Score: 530
Period size: 78 Copynumber: 9.8 Consensus size: 78
72472775 GAAAACATCC
* *
72472785 GAAGGTTAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
72472850 GATCTGCTTCAAT
66 GATCTGCTTCAAT
* * *
72472863 GAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCTTCTAATACAGAGATGCCAAATTATCTTG
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
72472928 GATCTGCTTCAAT
66 GATCTGCTTCAAT
* * *
72472941 GAAGGTCAGATCTGTTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
72473006 GATCTGCTTCAAT
66 GATCTGCTTCAAT
* * * ** *
72473019 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCTGTCGAATATGGAGATGCCAAATCTGTTTC
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC---ATC
* * **
72473084 TTAGATTTG-TTCTCT
63 TTGGATCTGCTTCAAT
* * * * * * * *
72473099 GACA-GTACAGAGAT-TCCAAATCATCTTAGATCTGCT-TCAG-CGTAA-ACACGTGAAAGCCAA
1 GA-AGGT-C--AGATCTGC-TAT-GTCTTCGATCTGCTCCCCGTC-TAATACA-GAG-ATGCCAA
* *
72473159 ATCTTCTAT--ATCT--TCCAA-
57 ATCATCT-TGGATCTGCTTCAAT
*** * * * * * *** * * * * ***
72473177 -ATCTTCTATATCTTCGATCTGC-TC-CT-TG-TAAACG-CAAGGATGCCAAATCAT-CTTGGAT
1 GAAGGTC-AGATCTGCTATGT-CTTCGATCTGCTCCCCGTCTA--AT-ACAGA-GATGC-CAAAT
* * * ***
72473235 C-TAATTCGATGTG-AAAACAT
59 CAT-CTTGGATCTGCTTCA-AT
*
72473255 CCGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 --GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
72473320 TTGATCTGCTTCAAT
64 TGGATCTGCTTCAAT
** * * * *
72473335 GAAGGTCAGATCTATTGTGTCTTCGATCTGCTCTCCTTCTAATACAGAGATACCAAATCATCTTG
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
72473400 GATCTGCTTCAAT
66 GATCTGCTTCAAT
* * * *
72473413 GAAGGTCAGATCTGCTGTATCTTTGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCTTG
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
*
72473478 GATCTACTTCAAT
66 GATCTGCTTCAAT
* * *
72473491 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGT-TGAATA-TGAAGATGCCAAATC
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCT-AATACAG-AGATGCCAAATC
72473550 TGTTTCTTCG
Statistics
Matches: 534, Mismatches: 111, Indels: 84
0.73 0.15 0.12
Matches are distributed among these distances:
71 2 0.00
72 4 0.01
73 5 0.01
74 7 0.01
75 11 0.02
76 4 0.01
77 4 0.01
78 386 0.72
79 3 0.01
80 36 0.07
81 24 0.04
82 9 0.02
83 16 0.03
84 23 0.04
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (78 bp):
GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
GATCTGCTTCAAT
Found at i:72473069 original size:156 final size:155
Alignment explanation
Indices: 72472785--72473549 Score: 658
Period size: 156 Copynumber: 4.9 Consensus size: 155
72472775 GAAAACATCC
* *
72472785 GAAGGTTAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
* * * *
72472850 GATCTGCTTCAATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCTTCTAATACAGAGATG
66 GATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCT-CTCTTCGAATACGGAGATG
*
72472915 CCAAATTATCTTGGATCTGCTTCAAT
130 CCAAATCATCTTGGATCTGCTTCAAT
* * *
72472941 GAAGGTCAGATCTGTTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
*
72473006 GATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCTGTCGAATATGGAGATG
66 GATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCT-TCGAATACGGAGATG
* * * **
72473071 CCAAATCTGTTTCTTAGATTTG-TTCTCT
130 CCAAATC---ATCTTGGATCTGCTTCAAT
* * * * * * * *
72473099 GACA-GTACAGAGAT-TCCAAATCATCTTAGATCTGCT-TCAG-CGTAA-ACACGTGAAAGCCAA
1 GA-AGGT-C--AGATCTGC-TAT-GTCTTCGATCTGCTCCCCGTC-TAATACA-GAG-ATGCCAA
* * * *
72473159 ATCTTC-T--ATAT-CTTCCA--AA--TC---T-T-CTATATCTTCGATCTGCTC-CTT-GTAA-
57 ATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCTTCG-AAT
* * *
72473208 ACGCAAGGATGCCAAATCATCTTGGATCTAATTCGATGTGAAAACAT
121 ACG-GA-GATGCCAAATCATCTTGGATC----T-GCT-T---CA-AT
*
72473255 CCGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 --GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
* ** * * *
72473320 TTGATCTGCTTCAATGAAGGTCAGATCTATTGTGTCTTCGATCTGCTCTCCTTCTAATACAGAGA
64 TGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCT-CTTCGAATACGGAGA
*
72473385 TACCAAATCATCTTGGATCTGCTTCAAT
128 TGCCAAATCATCTTGGATCTGCTTCAAT
* * * *
72473413 GAAGGTCAGATCTGCTGTATCTTTGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCTTG
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
* * * *
72473478 GATCTACTTCAATGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTT-GAATATGAAGAT
66 GATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCT-C-TTCGAATACGGAGAT
72473542 GCCAAATC
129 GCCAAATC
72473550 TGTTTCTTCG
Statistics
Matches: 481, Mismatches: 76, Indels: 104
0.73 0.11 0.16
Matches are distributed among these distances:
145 7 0.01
146 3 0.01
147 4 0.01
148 13 0.03
149 19 0.04
150 2 0.00
151 2 0.00
152 1 0.00
154 25 0.05
155 17 0.04
156 249 0.52
157 6 0.01
158 24 0.05
159 15 0.03
160 7 0.01
161 13 0.03
162 25 0.05
163 2 0.00
164 1 0.00
165 1 0.00
166 1 0.00
167 16 0.03
168 20 0.04
169 6 0.01
170 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (155 bp):
GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
GATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCTTCGAATACGGAGATGC
CAAATCATCTTGGATCTGCTTCAAT
Found at i:72473178 original size:18 final size:18
Alignment explanation
Indices: 72473155--72473191 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
72473145 CACGTGAAAG
72473155 CCAAATCTTCTATATCTT
1 CCAAATCTTCTATATCTT
72473173 CCAAATCTTCTATATCTT
1 CCAAATCTTCTATATCTT
72473191 C
1 C
72473192 GATCTGCTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.30, G:0.00, T:0.43
Consensus pattern (18 bp):
CCAAATCTTCTATATCTT
Found at i:72476912 original size:15 final size:15
Alignment explanation
Indices: 72476892--72476921 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
72476882 CTCAATTGGT
72476892 GAATATCTCATCTCA
1 GAATATCTCATCTCA
72476907 GAATATCTCATCTCA
1 GAATATCTCATCTCA
72476922 CACTCTGTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.27, G:0.07, T:0.33
Consensus pattern (15 bp):
GAATATCTCATCTCA
Found at i:72482189 original size:23 final size:22
Alignment explanation
Indices: 72482146--72482203 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
72482136 AAAAGGTATC
* *
72482146 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
72482167 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
72482190 TGCATATCATATCT
1 TACAAATCATATCT
72482204 AAGATTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:72482197 original size:17 final size:17
Alignment explanation
Indices: 72482175--72482233 Score: 66
Period size: 17 Copynumber: 3.4 Consensus size: 17
72482165 ATTACAAAAT
72482175 CATATCTTCTAAGATTG
1 CATATCTTCTAAGATTG
72482192 CATATCATATCTAAGATTG
1 CATATC-T-TCTAAGATTG
* *
72482211 TATAAT-ATCTAAGATTG
1 CAT-ATCTTCTAAGATTG
72482228 CATATC
1 CATATC
72482234 ATTGAAGATT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
16 2 0.06
17 18 0.51
18 1 0.03
19 12 0.34
20 2 0.06
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (17 bp):
CATATCTTCTAAGATTG
Found at i:72482206 original size:19 final size:19
Alignment explanation
Indices: 72482182--72482235 Score: 85
Period size: 17 Copynumber: 2.9 Consensus size: 19
72482172 AATCATATCT
72482182 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
72482201 TCTAAGATTG--TATAATA
1 TCTAAGATTGCATATCATA
72482218 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
72482236 TGAAGATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 16 0.52
19 15 0.48
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:72492424 original size:30 final size:31
Alignment explanation
Indices: 72492388--72492456 Score: 83
Period size: 30 Copynumber: 2.3 Consensus size: 31
72492378 TATCGTATCT
72492388 TGGGTTTCTT-TATCCTGGATCTT-TTTATTC
1 TGGGTTTCTTCTATCCTGGAT-TTCTTTATTC
*
72492418 TGGGTTT-TTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCCTGGATTTCTTTATTC
*
72492448 -GGTTTTCTT
1 TGGGTTTCTT
72492457 GTTATCTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
29 9 0.26
30 25 0.74
ACGTcount: A:0.09, C:0.14, G:0.17, T:0.59
Consensus pattern (31 bp):
TGGGTTTCTTCTATCCTGGATTTCTTTATTC
Found at i:72494897 original size:46 final size:45
Alignment explanation
Indices: 72494847--72495022 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
72494837 TGGTTGAGCA
72494847 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
72494893 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
72494940 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
72494986 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72495023 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:72495003 original size:93 final size:93
Alignment explanation
Indices: 72494844--72495014 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
72494834 GGATGGTTGA
* *
72494844 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
72494909 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
72494937 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
72495002 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
72495015 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:72502225 original size:8 final size:8
Alignment explanation
Indices: 72502202--72502226 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
72502192 TTTAATAATA
72502202 TATTTTAT
1 TATTTTAT
72502210 TATTTTAT
1 TATTTTAT
72502218 TATTTTAT
1 TATTTTAT
72502226 T
1 T
72502227 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:72505011 original size:33 final size:33
Alignment explanation
Indices: 72504956--72505111 Score: 97
Period size: 33 Copynumber: 4.7 Consensus size: 33
72504946 AATTGACGGA
* *
72504956 TAAGACCATGGCT-GAGCCATGGCAATATATGTG
1 TAAGACCATAGCTAG-GCTATGGCAATATATGTG
* *
72504989 TAAGACCATAGCTAGGCTATGGC-ATCCTGATG-A
1 TAAGACCATAGCTAGGCTATGGCAAT-AT-ATGTG
* * * ** *
72505022 TAAGACCATATCTGGGATATGGCACCACGA-GTG
1 TAAGACCATAGCTAGGCTATGGCAATA-TATGTG
* * * *
72505055 TAAGACCATGGCTAGGCCATGGCAATACACGTG
1 TAAGACCATAGCTAGGCTATGGCAATATATGTG
*
72505088 TAAGACCATAG-TTGGACTATGGCA
1 TAAGACCATAGCTAGG-CTATGGCA
72505112 TCATACCAGA
Statistics
Matches: 92, Mismatches: 23, Indels: 16
0.70 0.18 0.12
Matches are distributed among these distances:
32 7 0.08
33 81 0.88
34 4 0.04
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (33 bp):
TAAGACCATAGCTAGGCTATGGCAATATATGTG
Found at i:72505235 original size:45 final size:45
Alignment explanation
Indices: 72505121--72505236 Score: 153
Period size: 45 Copynumber: 2.6 Consensus size: 45
72505111 ATCATACCAG
72505121 AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCAGGATTC
1 AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCAGGATTC
* * * *
72505166 AGACGAATAAGACCATAGCCGAAAGACGCTATGGCATC-GCGATTC
1 AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCAG-GATTC
* * *
72505211 AAATGTGTAAGACCATGGTTGAAAGA
1 AAATGAGTAAGACCATAGCTGAAAGA
72505237 TACCATGACA
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
44 1 0.02
45 58 0.98
ACGTcount: A:0.38, C:0.18, G:0.25, T:0.19
Consensus pattern (45 bp):
AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCAGGATTC
Found at i:72505323 original size:47 final size:46
Alignment explanation
Indices: 72505218--72505355 Score: 204
Period size: 47 Copynumber: 3.0 Consensus size: 46
72505208 TTCAAATGTG
* * *
72505218 TAAGACCATGGTTGAAAGATACCATGACAACGTGACATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
* *
72505264 TAAGACCATGGTTGAAAGATAGCATGGCAACATGACGGGGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGAC-AGGAAATGAA
* *
72505311 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACAGAAAATGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGA
72505356 GAAATTTCAT
Statistics
Matches: 82, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
46 40 0.49
47 42 0.51
ACGTcount: A:0.42, C:0.15, G:0.25, T:0.18
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
Found at i:72505892 original size:24 final size:23
Alignment explanation
Indices: 72505861--72505907 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 23
72505851 ATTACATGAT
*
72505861 TATTCTGGTGTGTTTTGGTTGGA
1 TATTCTGGTGTGTTTGGGTTGGA
72505884 TATTACTGGTGTGTTTGGGTTGGA
1 TATT-CTGGTGTGTTTGGGTTGGA
72505908 ATCCGTGTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.11, C:0.04, G:0.36, T:0.49
Consensus pattern (23 bp):
TATTCTGGTGTGTTTGGGTTGGA
Found at i:72509252 original size:37 final size:37
Alignment explanation
Indices: 72509209--72509282 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
72509199 TTGTATGAGA
72509209 ATAACGGCTGGAAATAAGGATTAAATTGGAAGAATTT
1 ATAACGGCTGGAAATAAGGATTAAATTGGAAGAATTT
72509246 ATAACGGCTGGAAATAAGGATTAAATTGGAAGAATTT
1 ATAACGGCTGGAAATAAGGATTAAATTGGAAGAATTT
72509283 TATTTTTTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.43, C:0.05, G:0.24, T:0.27
Consensus pattern (37 bp):
ATAACGGCTGGAAATAAGGATTAAATTGGAAGAATTT
Found at i:72512125 original size:15 final size:15
Alignment explanation
Indices: 72512101--72512134 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
72512091 AATTTTAATC
72512101 ATTTTTTTAAAT-TT
1 ATTTTTTTAAATATT
72512115 ATTTATTTTAAATATT
1 ATTT-TTTTAAATATT
72512131 ATTT
1 ATTT
72512135 GTTATTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.22
15 8 0.44
16 6 0.33
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
ATTTTTTTAAATATT
Found at i:72512213 original size:5 final size:5
Alignment explanation
Indices: 72512195--72512309 Score: 66
Period size: 5 Copynumber: 24.0 Consensus size: 5
72512185 TATTTTCAAG
*
72512195 TATAT T-TA- TATAT TATAT TATTT TATAT T-T-T TATAT TATTAT ATATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TA-TAT -TATAT
* * * * * *
72512243 TATAT TATCT TATGT TTTAA TATA- CAT-T ATATAT TATAT TATTT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT -TATAT TATAT TATAT TATAT
* *
72512292 TTTAT CATA- TAT-T TATAT
1 TATAT TATAT TATAT TATAT
72512310 CTTATTACAT
Statistics
Matches: 83, Mismatches: 16, Indels: 22
0.69 0.13 0.18
Matches are distributed among these distances:
3 3 0.04
4 13 0.16
5 58 0.70
6 7 0.08
7 2 0.02
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.62
Consensus pattern (5 bp):
TATAT
Found at i:72512222 original size:10 final size:10
Alignment explanation
Indices: 72512159--72512292 Score: 58
Period size: 10 Copynumber: 13.8 Consensus size: 10
72512149 CATATAAAAA
72512159 TTTAT-TTAT
1 TTTATATTAT
72512168 TTGTATATTAT
1 TT-TATATTAT
*
72512179 TTT-TGTTAT
1 TTTATATTAT
*
72512188 TTTCA-AGTAT
1 TTT-ATATTAT
72512198 ATTTATA-TA-
1 -TTTATATTAT
72512207 -TTATATTAT
1 TTTATATTAT
72512216 TTTATA-T-T
1 TTTATATTAT
72512224 TTTATATTAT
1 TTTATATTAT
72512234 TATATATATTAT
1 T-T-TATATTAT
* *
72512246 ATTATCTTAT
1 TTTATATTAT
72512256 GTTT-TA--A-
1 -TTTATATTAT
* *
72512263 TATACATTAT
1 TTTATATTAT
72512273 ATATTATATTAT
1 -T-TTATATTAT
72512285 TTTATATT
1 TTTATATT
72512293 TTATCATATA
Statistics
Matches: 94, Mismatches: 11, Indels: 39
0.65 0.08 0.27
Matches are distributed among these distances:
6 2 0.02
7 6 0.06
8 10 0.11
9 13 0.14
10 32 0.34
11 16 0.17
12 15 0.16
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.63
Consensus pattern (10 bp):
TTTATATTAT
Found at i:72512473 original size:19 final size:19
Alignment explanation
Indices: 72512430--72512484 Score: 55
Period size: 17 Copynumber: 3.1 Consensus size: 19
72512420 ATTTTATTCT
* *
72512430 TTTATATTTTATATGT-TA
1 TTTATATTATATATATATA
*
72512448 CTT-TATTATATATATATA
1 TTTATATTATATATATATA
72512466 TTTATATTAT-TA-ATATA
1 TTTATATTATATATATATA
72512483 TT
1 TT
72512485 ATTACACTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
17 17 0.55
18 8 0.26
19 6 0.19
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (19 bp):
TTTATATTATATATATATA
Found at i:72512539 original size:22 final size:23
Alignment explanation
Indices: 72512513--72512563 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
72512503 TTATAAATTA
* *
72512513 TTATTAAGCAT-TA-TATTTATG
1 TTATTAAACATGTAGTATGTATG
72512534 TGTATTAAACATGTAGTATGTATG
1 T-TATTAAACATGTAGTATGTATG
72512558 TTATTA
1 TTATTA
72512564 TAAAATTCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 1 0.04
22 9 0.36
23 7 0.28
24 8 0.32
ACGTcount: A:0.33, C:0.04, G:0.14, T:0.49
Consensus pattern (23 bp):
TTATTAAACATGTAGTATGTATG
Found at i:72516342 original size:20 final size:20
Alignment explanation
Indices: 72516317--72516357 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
72516307 AAGAGAGAGT
72516317 AAGAGAAAGGAAATCTGGAA
1 AAGAGAAAGGAAATCTGGAA
72516337 AAGAGAAAGGAAATCTGGAA
1 AAGAGAAAGGAAATCTGGAA
72516357 A
1 A
72516358 CAACACATCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.56, C:0.05, G:0.29, T:0.10
Consensus pattern (20 bp):
AAGAGAAAGGAAATCTGGAA
Found at i:72524565 original size:44 final size:44
Alignment explanation
Indices: 72524517--72524775 Score: 358
Period size: 44 Copynumber: 5.9 Consensus size: 44
72524507 CGTTTACAAG
* *
72524517 GAGCATATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* * *
72524561 GAGCAGATCGAGGATAGCAGATTTGGTGTCTCTATATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* *
72524605 GAGCAGATCGCAGATAGTAGATTTGGCGTCTCTGTATTGTCA-A
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* *
72524648 TGAGCAGATCGAAGATAGCAGATTTGGTGTCTCTGTATTGTTAGA
1 -GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* * * *
72524693 GAGCAGATTGAAGATAGCAGATTTGGCGTCTCCGTACTGTCCGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* * *
72524737 GAGCAGATTGAAGATAGCGGATTTGACGTCTCTGTATTG
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
72524776 ATAAGGAACA
Statistics
Matches: 189, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
43 1 0.01
44 187 0.99
45 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (44 bp):
GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
Found at i:72524805 original size:88 final size:88
Alignment explanation
Indices: 72524523--72524813 Score: 221
Period size: 88 Copynumber: 3.3 Consensus size: 88
72524513 CAAGGAGCAT
* * * * * * * *
72524523 ATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA-GAGCAGATCGAGGATAGCAGATTTGG
1 ATCGAAGAAAACAAATTTGGCGTCTCCGTACTGTCA-ATGAGCAGATCGAAGATAGCAGATTTGA
* * * * *
72524587 TGTCTCTATATTGTCAGAGAGCAG
65 CGTCTCTGTATTGTAAGAGAACAA
* * ** * * * **
72524611 ATCGCAGATAGTAGATTTGGCGTCTCTGTATTGTCAATGAGCAGATCGAAGATAGCAGATTTGGT
1 ATCGAAGAAAACAAATTTGGCGTCTCCGTACTGTCAATGAGCAGATCGAAGATAGCAGATTTGAC
* * *
72524676 GTCTCTGTATTGTTAGAGAGCAG
66 GTCTCTGTATTGTAAGAGAACAA
* * * * * * *
72524699 ATTGAAGATAGCAGATTTGGCGTCTCCGTACTGTCCGA-GAGCAGATTGAAGATAGCGGATTTGA
1 ATCGAAGAAAACAAATTTGGCGTCTCCGTACTGT-CAATGAGCAGATCGAAGATAGCAGATTTGA
72524763 CGTCTCTGTATTGATAAG-GAACAAA
65 CGTCTCTGTATTG-TAAGAGAAC-AA
*
72524788 ATCGAA-AAAACAAATTTGGCATCTCC
1 ATCGAAGAAAACAAATTTGGCGTCTCC
72524814 ATATTCGACA
Statistics
Matches: 175, Mismatches: 24, Indels: 8
0.85 0.12 0.04
Matches are distributed among these distances:
87 1 0.01
88 163 0.93
89 11 0.06
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (88 bp):
ATCGAAGAAAACAAATTTGGCGTCTCCGTACTGTCAATGAGCAGATCGAAGATAGCAGATTTGAC
GTCTCTGTATTGTAAGAGAACAA
Found at i:72524805 original size:132 final size:132
Alignment explanation
Indices: 72524513--72524839 Score: 325
Period size: 132 Copynumber: 2.5 Consensus size: 132
72524503 CTTGCGTTTA
* * * * * ** *
72524513 CAAGGAGCATATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAGGATAG
1 CAAGGAACAAATCGAAGAAAACAAATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG
* * * * * *
72524578 CAGATTTGGTGTCTCTATATTGTCAGAGAGCAGATCGCAGATAGTAGATTTGGCGTCTCTGTATT
66 CAGATTTGGCGTCTCCATACTGTCAGAGAGCAGATCGAAGATAGCAGATTTGACGTCTCTGTATT
72524643 GT
131 GT
* * * * * * * *
72524645 CAATGAGCAGATCGAAGATAGCAGATTTGGTGTCTCTGTATTGTTAGAGAGCAGATTGAAGATAG
1 CAAGGAACAAATCGAAGAAAACAAATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG
* * * *
72524710 CAGATTTGGCGTCTCCGTACTGTCCGAGAGCAGATTGAAGATAGCGGATTTGACGTCTCTGTATT
66 CAGATTTGGCGTCTCCATACTGTCAGAGAGCAGATCGAAGATAGCAGATTTGACGTCTCTGTATT
72524775 GAT
131 G-T
** ** * *
72524778 -AAGGAACAAAATCGAA-AAAACAAATTTGGCATCTCCATATTCGACAGAGAGCAGATCAAAGA
1 CAAGGAAC-AAATCGAAGAAAACAAATTTGGTGTCTCTGTATT-GTCAGAGAGCAGATCGAAGA
72524840 CATAGTAGAT
Statistics
Matches: 161, Mismatches: 31, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
132 137 0.85
133 24 0.15
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (132 bp):
CAAGGAACAAATCGAAGAAAACAAATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG
CAGATTTGGCGTCTCCATACTGTCAGAGAGCAGATCGAAGATAGCAGATTTGACGTCTCTGTATT
GT
Found at i:72524997 original size:45 final size:45
Alignment explanation
Indices: 72524890--72525041 Score: 175
Period size: 44 Copynumber: 3.4 Consensus size: 45
72524880 GATCCAAGAT
* *
72524890 GATTTGGCATCTT-CGTATTCGACGAGGAGTAAATCCAAGAAG-TA
1 GATTTGGCAT-TTCCGTATTCGACGAGGAGCAAATCCAAGAAGACA
** * * *
72524934 GATTTGGCATCCCCGTATTCGACGGGGAGCAGATCCAAGATGACA
1 GATTTGGCATTTCCGTATTCGACGAGGAGCAAATCCAAGAAGACA
* *
72524979 GATTTGGCATTTCCGTATTCGACGAGGAACAAAACCAAGAAGAC-
1 GATTTGGCATTTCCGTATTCGACGAGGAGCAAATCCAAGAAGACA
* *
72525023 GATTTGGCATATCTGTATT
1 GATTTGGCATTTCCGTATT
72525042 TGACAGAACA
Statistics
Matches: 90, Mismatches: 16, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
44 52 0.58
45 38 0.42
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (45 bp):
GATTTGGCATTTCCGTATTCGACGAGGAGCAAATCCAAGAAGACA
Found at i:72525277 original size:17 final size:17
Alignment explanation
Indices: 72525255--72525287 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
72525245 CAAAAATTAA
*
72525255 AAAAATGAAATTAAACG
1 AAAAATAAAATTAAACG
72525272 AAAAATAAAATTAAAC
1 AAAAATAAAATTAAAC
72525288 AGTCCATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.70, C:0.06, G:0.06, T:0.18
Consensus pattern (17 bp):
AAAAATAAAATTAAACG
Found at i:72526343 original size:30 final size:29
Alignment explanation
Indices: 72526300--72526360 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 29
72526290 TTTCCAATTT
* *
72526300 CATTTTATTTTATTAT-AATTTGGCCCTAA
1 CATTTTACTTTATT-TCAATTTAGCCCTAA
*
72526329 CATTTTGACTTTATTTCAATTTAGTCCTAA
1 CATTTT-ACTTTATTTCAATTTAGCCCTAA
72526359 CA
1 CA
72526361 GCTCCTTTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 7 0.26
30 20 0.74
ACGTcount: A:0.28, C:0.16, G:0.07, T:0.49
Consensus pattern (29 bp):
CATTTTACTTTATTTCAATTTAGCCCTAA
Found at i:72526544 original size:15 final size:15
Alignment explanation
Indices: 72526520--72526553 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
72526510 AATTTTAATC
72526520 ATTTTTTTAAAT-TT
1 ATTTTTTTAAATATT
72526534 ATTTATTTTAAATATT
1 ATTT-TTTTAAATATT
72526550 ATTT
1 ATTT
72526554 GTTATTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.22
15 8 0.44
16 6 0.33
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
ATTTTTTTAAATATT
Found at i:72526632 original size:5 final size:5
Alignment explanation
Indices: 72526614--72526728 Score: 66
Period size: 5 Copynumber: 24.0 Consensus size: 5
72526604 TATTTTCAAG
*
72526614 TATAT T-TA- TATAT TATAT TATTT TATAT T-T-T TATAT TATTAT ATATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TA-TAT -TATAT
* * * * * *
72526662 TATAT TATCT TATGT TTTAA TATA- CAT-T ATATAT TATAT TATTT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT -TATAT TATAT TATAT TATAT
* *
72526711 TTTAT CATA- TAT-T TATAT
1 TATAT TATAT TATAT TATAT
72526729 CTTATTACAT
Statistics
Matches: 83, Mismatches: 16, Indels: 22
0.69 0.13 0.18
Matches are distributed among these distances:
3 3 0.04
4 13 0.16
5 58 0.70
6 7 0.08
7 2 0.02
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.62
Consensus pattern (5 bp):
TATAT
Found at i:72526641 original size:10 final size:10
Alignment explanation
Indices: 72526578--72526711 Score: 58
Period size: 10 Copynumber: 13.8 Consensus size: 10
72526568 CATATAAAAA
72526578 TTTAT-TTAT
1 TTTATATTAT
72526587 TTGTATATTAT
1 TT-TATATTAT
*
72526598 TTT-TGTTAT
1 TTTATATTAT
*
72526607 TTTCA-AGTAT
1 TTT-ATATTAT
72526617 ATTTATA-TA-
1 -TTTATATTAT
72526626 -TTATATTAT
1 TTTATATTAT
72526635 TTTATA-T-T
1 TTTATATTAT
72526643 TTTATATTAT
1 TTTATATTAT
72526653 TATATATATTAT
1 T-T-TATATTAT
* *
72526665 ATTATCTTAT
1 TTTATATTAT
72526675 GTTT-TA--A-
1 -TTTATATTAT
* *
72526682 TATACATTAT
1 TTTATATTAT
72526692 ATATTATATTAT
1 -T-TTATATTAT
72526704 TTTATATT
1 TTTATATT
72526712 TTATCATATA
Statistics
Matches: 94, Mismatches: 11, Indels: 39
0.65 0.08 0.27
Matches are distributed among these distances:
6 2 0.02
7 6 0.06
8 10 0.11
9 13 0.14
10 32 0.34
11 16 0.17
12 15 0.16
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.63
Consensus pattern (10 bp):
TTTATATTAT
Found at i:72526878 original size:17 final size:17
Alignment explanation
Indices: 72526849--72526901 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
72526839 ATTTTATTCT
* *
72526849 TTTATATTTTATATGTTA
1 TTTATATTATATAT-ATA
72526867 TTT-TATTATATATATA
1 TTTATATTATATATATA
72526883 TTTATATTAT-TAATATA
1 TTTATATTATAT-ATATA
72526900 TT
1 TT
72526902 ATTACACTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
16 6 0.19
17 22 0.71
18 3 0.10
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (17 bp):
TTTATATTATATATATA
Found at i:72526886 original size:27 final size:27
Alignment explanation
Indices: 72526837--72526889 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
72526827 TATCATTACA
* *
72526837 TTATTTTATTCTTTTATATTTTATATG
1 TTATTTTATTATTATATATTTTATATG
72526864 TTATTTTATTA-TATATATATTTATAT
1 TTATTTTATTATTATATAT-TTTATAT
72526890 TATTAATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.26
27 17 0.74
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (27 bp):
TTATTTTATTATTATATATTTTATATG
Found at i:72526899 original size:11 final size:10
Alignment explanation
Indices: 72526851--72526905 Score: 50
Period size: 9 Copynumber: 6.0 Consensus size: 10
72526841 TTTATTCTTT
72526851 TATATT-TTA
1 TATATTATTA
*
72526860 TATGTTATT-
1 TATATTATTA
72526869 T-TATTA-TA
1 TATATTATTA
72526877 TATA-TATT-
1 TATATTATTA
72526885 TATATTATTAA
1 TATATTATT-A
72526896 TATATTATTA
1 TATATTATTA
72526906 CACTATTATG
Statistics
Matches: 37, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
7 1 0.03
8 11 0.30
9 13 0.35
10 3 0.08
11 9 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (10 bp):
TATATTATTA
Found at i:72526956 original size:22 final size:23
Alignment explanation
Indices: 72526930--72526980 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
72526920 TTATAAATTA
* *
72526930 TTATTAAGCAT-TA-TATTTATG
1 TTATTAAACATGTAGTATGTATG
72526951 TGTATTAAACATGTAGTATGTATG
1 T-TATTAAACATGTAGTATGTATG
72526975 TTATTA
1 TTATTA
72526981 TAAAATTCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 1 0.04
22 9 0.36
23 7 0.28
24 8 0.32
ACGTcount: A:0.33, C:0.04, G:0.14, T:0.49
Consensus pattern (23 bp):
TTATTAAACATGTAGTATGTATG
Found at i:72533035 original size:21 final size:21
Alignment explanation
Indices: 72532989--72533035 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
72532979 CGGCTTTTAT
*
72532989 TTAAAATATACAATTTAATGG
1 TTAAAATATACAATTTAAAGG
* *
72533010 CTAAAATCT-CAATTTTAAAGG
1 TTAAAATATACAA-TTTAAAGG
72533031 TTAAA
1 TTAAA
72533036 TAACATTAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.36
Consensus pattern (21 bp):
TTAAAATATACAATTTAAAGG
Found at i:72535943 original size:17 final size:17
Alignment explanation
Indices: 72535921--72535953 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
72535911 TTAGAAGAAT
72535921 AAAAATAAATAAATAAC
1 AAAAATAAATAAATAAC
72535938 AAAAATAAATAAATAA
1 AAAAATAAATAAATAA
72535954 AGAGAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (17 bp):
AAAAATAAATAAATAAC
Found at i:72539860 original size:24 final size:24
Alignment explanation
Indices: 72539828--72539874 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
72539818 ACACCTTCAT
*
72539828 ATACATATACACATGAACACATAC
1 ATACATATACACATAAACACATAC
*
72539852 ATACTTATACACATAAACACATA
1 ATACATATACACATAAACACATA
72539875 TACACAAACC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.51, C:0.23, G:0.02, T:0.23
Consensus pattern (24 bp):
ATACATATACACATAAACACATAC
Found at i:72539873 original size:8 final size:8
Alignment explanation
Indices: 72539830--72539880 Score: 50
Period size: 8 Copynumber: 6.4 Consensus size: 8
72539820 ACCTTCATAT
72539830 ACATATAC
1 ACATATAC
72539838 ACATGA-AC
1 ACAT-ATAC
* *
72539846 ACATACAT
1 ACATATAC
*
72539854 ACTTATAC
1 ACATATAC
*
72539862 ACATAAAC
1 ACATATAC
72539870 ACATATAC
1 ACATATAC
72539878 ACA
1 ACA
72539881 AACCTTCCAC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
7 1 0.03
8 32 0.94
9 1 0.03
ACGTcount: A:0.51, C:0.25, G:0.02, T:0.22
Consensus pattern (8 bp):
ACATATAC
Found at i:72541356 original size:18 final size:18
Alignment explanation
Indices: 72541335--72541379 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
72541325 TAAGCCCCCT
72541335 AAAAAAACCTAACCCCAA
1 AAAAAAACCTAACCCCAA
*
72541353 AAAAAAACCTAACCCCCA
1 AAAAAAACCTAACCCCAA
72541371 AAAAAAACC
1 AAAAAAACC
72541380 AAGAAACCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.62, C:0.33, G:0.00, T:0.04
Consensus pattern (18 bp):
AAAAAAACCTAACCCCAA
Found at i:72551444 original size:138 final size:138
Alignment explanation
Indices: 72551173--72551423 Score: 357
Period size: 138 Copynumber: 1.8 Consensus size: 138
72551163 GTTCTATTTC
* * * * *
72551173 AAAATTCAATTCATATTGCGAGAGGTGGGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGGGTTGAGCCTCAGGACACGCTGAGGAATTGTCAATTTC
*** * *
72551238 TCGTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCGCTGAGGTA
66 TCGTATGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAAGACACGCTGAGGTA
72551303 TTTTAAAA
131 TTTTAAAA
72551311 AAAAATCAACTCATATTGCGAGAGG-GGAGTTGAGCCTCAGGACACGCTGAGGGAATT-TCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGG-GTTGAGCCTCAGGACACGCTGA-GGAATTGTCAATT
*
72551374 TCT-GT-TGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCA
64 TCTCGTATGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCA
72551424 GGTCACACGT
Statistics
Matches: 101, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
136 40 0.40
137 4 0.04
138 52 0.51
139 5 0.05
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.27
Consensus pattern (138 bp):
AAAAATCAACTCATATTGCGAGAGGTGGGTTGAGCCTCAGGACACGCTGAGGAATTGTCAATTTC
TCGTATGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAAGACACGCTGAGGTA
TTTTAAAA
Found at i:72551584 original size:75 final size:77
Alignment explanation
Indices: 72551456--72551790 Score: 234
Period size: 77 Copynumber: 4.1 Consensus size: 77
72551446 AATTTTCGTT
*
72551456 TTTCAAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-
1 TTTC-AATTTCTG-CTTTCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGC
*
72551520 ACACGCTGAGGTAA
64 ACACGCCGAGGTAA
* *
72551534 TTTCAATTTCTG-TTGTCAAAAAAAAAT-AACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTC
1 TTTCAATTTCTGCTT-TCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-C
*
72551597 ACACGCCGAGGTAT
64 ACACGCCGAGGTAA
* * * * **
72551611 TTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAAAAATCGACTCATATTGTGAGAGGTAA
1 TTTCAATTTCTG-CTTTCAA------------AA---AAAAATCAACTCATATTGCGAGAGGCGA
* * * * *
72551676 GTTAAGCCT-TGGCTCACGCGCTGAGCTAT
50 GTTGAGCCTCAGGCACACGC-C-GAGGTAA
* *
72551705 TTTCAATTTCTGTCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GATC
1 TTTCAATTTCTG-CTTTCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAG-GC
*
72551767 ACACGCCGAGGTAT
64 ACACGCCGAGGTAA
72551781 TTTCAATTTC
1 TTTCAATTTC
72551791 CGTTTTTTAA
Statistics
Matches: 207, Mismatches: 25, Indels: 52
0.73 0.09 0.18
Matches are distributed among these distances:
75 33 0.16
76 28 0.14
77 66 0.32
78 14 0.07
79 2 0.01
80 2 0.01
90 2 0.01
92 6 0.03
93 9 0.04
94 45 0.22
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31
Consensus pattern (77 bp):
TTTCAATTTCTGCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCAC
ACGCCGAGGTAA
Found at i:72551608 original size:77 final size:76
Alignment explanation
Indices: 72551456--72551620 Score: 226
Period size: 75 Copynumber: 2.1 Consensus size: 76
72551446 AATTTTCGTT
*
72551456 TTTCAAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
1 TTTC-AATTTCTG-CTTTCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGA
*
72551521 CACGCTGAGGTAA
64 CACGCCGAGGTAA
* *
72551534 TTTCAATTTCTG-TTGTCAAAAAAAAAT-AACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTC
1 TTTCAATTTCTGCTT-TCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG--
*
72551597 ACACGCCGAGGTAT
63 ACACGCCGAGGTAA
72551611 TTTCAATTTC
1 TTTCAATTTC
72551621 CGTTTTTCAA
Statistics
Matches: 79, Mismatches: 5, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
75 33 0.42
76 12 0.15
77 30 0.38
78 4 0.05
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (76 bp):
TTTCAATTTCTGCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACA
CGCCGAGGTAA
Found at i:72551635 original size:168 final size:168
Alignment explanation
Indices: 72551307--72551951 Score: 856
Period size: 168 Copynumber: 3.8 Consensus size: 168
72551297 GAGGTATTTT
* **
72551307 AAAAAAAAATCAACTCATATTGCGAGAGGGGAGTTGAGCCTCAGG-ACACGCTGAGGGAATTTCA
1 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGCACACGCTGAGCTAATTTCA
* * *
72551371 ATTTCTGT-TGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTC
65 ATTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGCC
*
72551435 GAGGTATTTTCAATTTTCGTTTTTCAAATTTCTGCCTTTC
130 GAGGTATTTTCAATTTCCGTTTTTC-AATTTCTGCCTTTC
*
72551475 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCA
1 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGCACACGCTGAGCTAATTTCA
* * *
72551539 ATTTCTGT-TGTCAAAAAAAAAT-AACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACG
65 ATTTCTGTCTGTC--AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACG
72551602 CCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC
128 CCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC
* * * * * * *
72551643 AAAAAAAAAATCGACTCATATTGTGAGAGGTAAGTTAAGCCTTGGCTCACGCGCTGAGCTATTTT
1 -AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGG--CACACGCTGAGCTAATTT
* *
72551708 CAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GATCACACG
63 CAATTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACG
*
72551772 CCGAGGTATTTTCAATTTCCGTTTTTTAATTTCTGCCTTTC
128 CCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC
** * * * *
72551813 -AAAAAAAATTGACTCATATTACGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTC
1 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGG--CACACGCTGAGCTAATTTC
* * * *
72551877 AATTTCTGTCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACAC
64 AATTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGC
*
72551941 TGAGGTATTTT
129 CGAGGTATTTT
72551952 TTTTCAATTT
Statistics
Matches: 441, Mismatches: 27, Indels: 18
0.91 0.06 0.04
Matches are distributed among these distances:
167 38 0.09
168 182 0.41
169 102 0.23
170 64 0.15
171 52 0.12
172 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.31
Consensus pattern (168 bp):
AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGCACACGCTGAGCTAATTTCAA
TTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGCCG
AGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC
Found at i:72551817 original size:90 final size:92
Alignment explanation
Indices: 72551704--72551892 Score: 256
Period size: 91 Copynumber: 2.1 Consensus size: 92
72551694 CGCTGAGCTA
* *
72551704 TTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCGATC
1 TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTCGATC
*
72551767 ACACGCCGAGGTATTTTCAATTTCCGT
66 ACACGCCGAGCTATTTTCAATTTCCGT
* ** * *
72551794 TTTTTAATTTCTGCCTTTCAAAAAAAATTGACTCATATTACGAGAGGTGAGTTGAGCCTTGGCTC
1 TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTCGATC
* * *
72551859 ACGCGCTGAGCTATTTTCAATTTCTGT
66 ACACGCCGAGCTATTTTCAATTTCCGT
*
72551886 CTTTCAA
1 TTTTCAA
72551893 AAAATCAACT
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
90 17 0.20
91 35 0.42
92 32 0.38
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (92 bp):
TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTCGATC
ACACGCCGAGCTATTTTCAATTTCCGT
Found at i:72552016 original size:79 final size:77
Alignment explanation
Indices: 72551815--72552165 Score: 254
Period size: 76 Copynumber: 4.4 Consensus size: 77
72551805 TGCCTTTCAA
** * * * *
72551815 AAAAAATTGACTCATATTACGAGAGGTGAGTTGAGCCTTG-GCTCACGCGCTGAGCTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGATCACACACTGAGCTATTTTCAA
* *
72551879 TTTCTGTCTTTC
66 TTTATATCTTTC
* *
72551891 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATCACACACTGAGGTATTTTTTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGATCACACACTGAGCTA----TTT
*
72551955 TCAATTTATATTTTTC
62 TCAATTTATATCTTTC
* *
72551971 -AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTTGAG-TCACATA-TCGAGGC-ATTTTC
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGATCACACACT-GA-GCTATTTTC
**
72552032 AAAATCTGCTTTTCAAGTTAAGTTTC
64 --AA------TTT--A--TATCTTTC
* * ** *
72552058 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-A-GACACGTTGAGGTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGATCACACACTGAGCTATTTTCAA
* *
72552119 TTTCTGTCTTTC
66 TTTATATCTTTC
*
72552131 AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
72552166 ACCTCAAGAC
Statistics
Matches: 222, Mismatches: 28, Indels: 51
0.74 0.09 0.17
Matches are distributed among these distances:
73 5 0.02
75 40 0.18
76 45 0.20
77 5 0.02
78 1 0.00
79 42 0.19
80 22 0.10
83 5 0.02
84 1 0.00
85 12 0.05
86 3 0.01
87 41 0.18
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (77 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGATCACACACTGAGCTATTTTCAA
TTTATATCTTTC
Found at i:72552205 original size:73 final size:74
Alignment explanation
Indices: 72552058--72552198 Score: 212
Period size: 75 Copynumber: 1.9 Consensus size: 74
72552048 GTTAAGTTTC
* *
72552058 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA-ACGCTGAGGTATTTTCAATTTC
72552123 TGTCTTTCAA
65 TGTCTTTCAA
* * * *
72552133 AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG-ACGCTGCGGTGTTTTCCATTTCT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGAACGCTGAGGTATTTTCAATTTCT
72552197 GT
66 GT
72552199 TCTTCAATTT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
73 21 0.35
75 39 0.65
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.31
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGAACGCTGAGGTATTTTCAATTTCT
GTCTTTCAA
Found at i:72552313 original size:15 final size:14
Alignment explanation
Indices: 72552277--72552309 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
72552267 CGCTGAGGTA
72552277 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
*
72552291 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
72552305 TTTTC
1 TTTTC
72552310 CAAAAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.64
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:72552437 original size:183 final size:179
Alignment explanation
Indices: 72552112--72552658 Score: 517
Period size: 181 Copynumber: 3.0 Consensus size: 179
72552102 CGTTGAGGTA
* * *
72552112 TTTTC-AATTTCTGTCTTT-CAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA--A
1 TTTTCAAATTTATG-CTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
* * * * * *
72552173 GACGCTGCGGTGTTTTCCATTT-CTGTTCTTCAATTTCTGTGTTTCAAAAAAAATCAGCTCATAT
65 CACGCTGAGGTATTTT-CATTTATTGTTTTTCAATTT-TGT-TTTC-AAAAAAATCAACTCATAT
* * *
72552237 TGCGAGTGGTGAGTTGAGCCTTAACTTACACGCTGAGGTATTTTCAAATTCTGT
126 TGCGAGAGGTGAGTTGAGCCTTAGCTCACACGCTGAGGTATTTTCAAATTCTGT
* *
72552291 TTTTCAAATTT-TGTTTTTCCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGG
1 TTTTCAAATTTATG-CTTTCC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
*
72552355 ACACGCTGAGGTATTTTCAATTTATTTTTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATAT
64 ACACGCTGAGGTATTTTC-ATTTATTGTTTTTCAATTT-TGTTT-TCAAAAAAATCAACTCATAT
* * * * *
72552420 TGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTGATGTTTTT
126 TGCGAGAGGTGAGTTGAGCCTTAGCTCACACGCTGAGGTATTTTCAA---AT-TCTGT
** * * * * *
72552478 TTTTTTAATTTATGCTTTGC--AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCTTCGGGTC
1 TTTTCAAATTTATGCTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
** * *
72552541 ACATATCGAGGTATTTTCA-TAATCTGTTTTACAAATTTTGTTTT---AAAAATCAACTCATATT
66 AC-GCT-GAGGTATTTTCATTTAT-TGTTTTTC-AATTTTGTTTTCAAAAAAATCAACTCATATT
* * * *
72552602 GCGAGAAGTGAGTTGAGCCTTGGCTCAC-CTGCTGAGCTATTTTCAATTTCTGT
127 GCGAGAGGTGAGTTGAGCCTTAGCTCACAC-GCTGAGGTATTTTCAAATTCTGT
72552655 TTTT
1 TTTT
72552659 AATGTCTAGT
Statistics
Matches: 307, Mismatches: 43, Indels: 38
0.79 0.11 0.10
Matches are distributed among these distances:
177 7 0.02
178 1 0.00
179 11 0.04
180 7 0.02
181 93 0.30
182 1 0.00
183 78 0.25
184 60 0.20
185 13 0.04
186 18 0.06
187 16 0.05
188 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (179 bp):
TTTTCAAATTTATGCTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
ACGCTGAGGTATTTTCATTTATTGTTTTTCAATTTTGTTTTCAAAAAAATCAACTCATATTGCGA
GAGGTGAGTTGAGCCTTAGCTCACACGCTGAGGTATTTTCAAATTCTGT
Found at i:72552463 original size:92 final size:88
Alignment explanation
Indices: 72552112--72552658 Score: 454
Period size: 87 Copynumber: 6.0 Consensus size: 88
72552102 CGTTGAGGTA
* * *
72552112 TTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA---AG
1 TTTTCAATTT-TGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTAC
* * * *
72552174 ACGCTGCGGTGTTTTCCATTTCTGT
64 ACGCTGAGGTATTTTCAATTTTTGT
* * * * **
72552199 TCTTCAATTTCTGTGTTTCAAAAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAGCCTTAACTT
1 TTTTCAATTT-TGT-TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCAGGT
* *
72552264 ACACGCTGAGGTATTTTCAAATTCTGT
62 ACACGCTGAGGTATTTTCAATTTTTGT
*
72552291 TTTTCAAATTTTGTTTTTCCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGG-
1 TTTTC-AATTTTG-TTTT-C-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT
*
72552355 ACACGCTGAGGTATTTTCAATTTATTTT
62 ACACGCTGAGGTATTTTCAATTT-TTGT
72552383 TTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
1 TTTTCAATTT-TGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT-A
* *
72552448 CACGCCGAGGTATTTTCAATTGATGTTTTTT
63 CACGCTGAGGTATTTTC-A---AT-TTTTGT
* * * * *
72552479 TTTTTAATTTATGCTTTGC--AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCTTCGGGT-C
1 TTTTCAATTT-TG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTAC
** * *
72552541 ACATATCGAGGTATTTTC-ATAATCTGT
64 AC-GCT-GAGGTATTTTCAAT-TTTTGT
* * *
72552568 TTTACAAATTTTGTTTT---AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-TGGCT-C
1 TTTTC-AATTTTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TAC
* *
72552628 ACCTGCTGAGCTATTTTCAATTTCTGT
64 A-C-GCTGAGGTATTTTCAATTTTTGT
72552655 TTTT
1 TTTT
72552659 AATGTCTAGT
Statistics
Matches: 388, Mismatches: 47, Indels: 50
0.80 0.10 0.10
Matches are distributed among these distances:
86 2 0.01
87 72 0.19
88 43 0.11
89 12 0.03
90 47 0.12
91 31 0.08
92 63 0.16
93 44 0.11
94 50 0.13
96 19 0.05
97 5 0.01
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (88 bp):
TTTTCAATTTTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACAC
GCTGAGGTATTTTCAATTTTTGT
Found at i:72552524 original size:94 final size:91
Alignment explanation
Indices: 72552112--72552621 Score: 401
Period size: 92 Copynumber: 5.6 Consensus size: 91
72552102 CGTTGAGGTA
* * *
72552112 TTTTCAATTTCTGTCTT-TCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA----
1 TTTTCAATTTATGT-TTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTC
* * * * * * *
72552172 AGACGCTGCGGTGTTTTCCATTT-CTGT
64 ACACGCCGAGGTATTTTCAATTTATTTT
* * * * * **
72552199 TCTTCAATTTCTGTGTT-TCAAAAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAGCCTTAACT
1 TTTTCAATTTATGT-TTGTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT
* * * * *
72552263 TACACGCTGAGGTATTTTCAAATT-CTGT
63 CACACGCCGAGGTATTTTCAATTTATTTT
* *
72552291 TTTTCAAATTT-TGTTTTTCCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGG
1 TTTTC-AATTTATGTTTGT-C--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
*
72552355 --ACACGCTGAGGTATTTTCAATTTATTTT
62 TCACACGCCGAGGTATTTTCAATTTATTTT
72552383 TTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
1 TTTTCAATTTATGTTTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
*
72552448 CACGCCGAGGTATTTTCAATTGATGTTTTTT
65 CACGCCGAGGTATTTTCAA-T--T-TATTTT
* * * *
72552479 TTTTTAATTTATGCTTTG-C-AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCTTCGGGTCA
1 TTTTCAATTTATG-TTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
*** * *
72552542 CATATCGAGGTATTTTC-A-TAATCTGT
65 CACGCCGAGGTATTTTCAATTTAT-TTT
* *
72552568 TTTACAAATTT-TGTTT-T--AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
1 TTTTC-AATTTATGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
72552622 TGGCTCACCT
Statistics
Matches: 364, Mismatches: 39, Indels: 40
0.82 0.09 0.09
Matches are distributed among these distances:
87 51 0.14
88 42 0.12
89 8 0.02
90 47 0.13
91 30 0.08
92 62 0.17
93 46 0.13
94 55 0.15
95 1 0.00
96 18 0.05
97 4 0.01
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.37
Consensus pattern (91 bp):
TTTTCAATTTATGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC
ACGCCGAGGTATTTTCAATTTATTTT
Found at i:72553370 original size:25 final size:24
Alignment explanation
Indices: 72553338--72553398 Score: 97
Period size: 25 Copynumber: 2.5 Consensus size: 24
72553328 CCTCCCCAAA
72553338 AAAAAACCTAACCAAAAAAAAAAAG
1 AAAAAACCTAACC-AAAAAAAAAAG
*
72553363 AAAAAACCTAACCCAAAAAAAAAG
1 AAAAAACCTAACCAAAAAAAAAAG
72553387 -AAAAACCTAACC
1 AAAAAACCTAACC
72553399 CCCCCCCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
23 12 0.34
24 10 0.29
25 13 0.37
ACGTcount: A:0.70, C:0.21, G:0.03, T:0.05
Consensus pattern (24 bp):
AAAAAACCTAACCAAAAAAAAAAG
Found at i:72553399 original size:23 final size:23
Alignment explanation
Indices: 72553335--72553399 Score: 96
Period size: 23 Copynumber: 2.8 Consensus size: 23
72553325 AGCCCTCCCC
*
72553335 AAAA-AAAAACCTAACCAAAAAAA
1 AAAAGAAAAACCTAACC-CAAAAA
72553358 AAAAGAAAAAACCTAACCCAAAAA
1 AAAAG-AAAAACCTAACCCAAAAA
72553382 AAAAGAAAAACCTAACCC
1 AAAAGAAAAACCTAACCC
72553400 CCCCCCAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
23 17 0.44
24 10 0.26
25 12 0.31
ACGTcount: A:0.71, C:0.22, G:0.03, T:0.05
Consensus pattern (23 bp):
AAAAGAAAAACCTAACCCAAAAA
Found at i:72556970 original size:15 final size:15
Alignment explanation
Indices: 72556920--72557004 Score: 82
Period size: 15 Copynumber: 5.7 Consensus size: 15
72556910 AAGGATAACC
* *
72556920 AGAAAACCAAGATAG
1 AGAAATCCAAGATAA
*
72556935 AGAAA-CCCAGAATAA
1 AGAAATCCAAG-ATAA
*
72556950 AGAAATCCAACATAA
1 AGAAATCCAAGATAA
* *
72556965 AGAAATCCTAGATAG
1 AGAAATCCAAGATAA
* *
72556980 ATAAGTCCAAGATAA
1 AGAAATCCAAGATAA
72556995 AGAAATCCAA
1 AGAAATCCAA
72557005 ATTACAATAT
Statistics
Matches: 55, Mismatches: 13, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
14 4 0.07
15 48 0.87
16 3 0.05
ACGTcount: A:0.56, C:0.16, G:0.14, T:0.13
Consensus pattern (15 bp):
AGAAATCCAAGATAA
Found at i:72560348 original size:9 final size:9
Alignment explanation
Indices: 72560334--72560363 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
72560324 TGGACAATCA
72560334 TTTTTAATT
1 TTTTTAATT
72560343 TTTTTAATT
1 TTTTTAATT
72560352 TTTTTAATT
1 TTTTTAATT
72560361 TTT
1 TTT
72560364 ACCTACTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTTTAATT
Found at i:72561504 original size:72 final size:71
Alignment explanation
Indices: 72561312--72561512 Score: 172
Period size: 71 Copynumber: 2.8 Consensus size: 71
72561302 AAAATCATTT
** * * * ** *
72561312 AATTATGTGTTTTCAAAAAGGTTAATTAAGTTCAATTTATTAAGTTTTGATATTAAGCGAAACCG
1 AATTATGAATTTTTAAAAA-GTTAATTTAGTTCAATTTATTGAGTTTTGATATTAAGTAAAAACG
*
72561377 TTTATTT
65 TTTATTC
* * * * * * ** **
72561384 AGTTAT-ACA-TTCTCATAAGCCTAATTTCGTTTGATTTATTGAAATTTGATATTAAGTAAAAAC
1 AATTATGA-ATTTTTAAAAAG-TTAATTTAGTTCAATTTATTGAGTTTTGATATTAAGTAAAAAC
*
72561447 GTTTGTTC
64 GTTTATTC
72561455 AATTATGAATTTTTAAAAATGTTAATTTAGTTCAATTTATTGAGTTTTGATATTAAGT
1 AATTATGAATTTTTAAAAA-GTTAATTTAGTTCAATTTATTGAGTTTTGATATTAAGT
72561513 GGAACCATTT
Statistics
Matches: 94, Mismatches: 30, Indels: 10
0.70 0.22 0.07
Matches are distributed among these distances:
70 1 0.01
71 49 0.52
72 43 0.46
73 1 0.01
ACGTcount: A:0.34, C:0.07, G:0.13, T:0.46
Consensus pattern (71 bp):
AATTATGAATTTTTAAAAAGTTAATTTAGTTCAATTTATTGAGTTTTGATATTAAGTAAAAACGT
TTATTC
Found at i:72561532 original size:72 final size:71
Alignment explanation
Indices: 72561321--72561535 Score: 193
Period size: 72 Copynumber: 3.0 Consensus size: 71
72561311 TAATTATGTG
* * * *
72561321 TTTTCAAAAAGGTTAATTAAGTTCAATTTATTAAGTTTTGATATTAAGCGAAACCGTTTATT-TA
1 TTTTTAAAAA-GTTAATTTAGTTCAATTTATTGAGTTTTGATATTAAGTGAAACCGTTTATTCTA
72561385 GTTATACA
65 -TTATACA
* * * * * ** ** * * * *
72561393 -TTCTCATAAGCCTAATTTCGTTTGATTTATTGAAATTTGATATTAAGTAAAAACGTTTGTTCAA
1 TTTTTAAAAAG-TTAATTTAGTTCAATTTATTGAGTTTTGATATTAAGTGAAACCGTTTATTCTA
72561457 TTATGA-A
65 TTAT-ACA
* *
72561464 TTTTTAAAAATGTTAATTTAGTTCAATTTATTGAGTTTTGATATTAAGTGGAACCATTTATTCTA
1 TTTTTAAAAA-GTTAATTTAGTTCAATTTATTGAGTTTTGATATTAAGTGAAACCGTTTATTCTA
72561529 TTATACA
65 TTATACA
72561536 AAGTAAAACC
Statistics
Matches: 105, Mismatches: 32, Indels: 12
0.70 0.21 0.08
Matches are distributed among these distances:
70 1 0.01
71 49 0.47
72 54 0.51
73 1 0.01
ACGTcount: A:0.34, C:0.08, G:0.12, T:0.45
Consensus pattern (71 bp):
TTTTTAAAAAGTTAATTTAGTTCAATTTATTGAGTTTTGATATTAAGTGAAACCGTTTATTCTAT
TATACA
Found at i:72561557 original size:99 final size:99
Alignment explanation
Indices: 72561437--72561631 Score: 282
Period size: 99 Copynumber: 2.0 Consensus size: 99
72561427 ATTTGATATT
* * * * *
72561437 AAGTAAAAACGTTTGTTCAATTATGAATTTTTAAAAATGTTAATTTAGTTCAATTTATTGAGTTT
1 AAGTAAAAACGCTTGTTCAATTATGAATTTTTAAAAAAGATAATTTAGTCCAATTTATTGAATTT
* * *
72561502 TGATATTAAGTGGAACCATTTATTCTATTATACA
66 TGATATTAACTAGAACCATTTATTCAATTATACA
* **
72561536 AAGTAAAACCGCTTGTTCAATTATGCGTTTTTAAAAAAGATAATTTAGTCCAATTTATTGAATTT
1 AAGTAAAAACGCTTGTTCAATTATGAATTTTTAAAAAAGATAATTTAGTCCAATTTATTGAATTT
*
72561601 TGATATTAACTAGAACCGTTTATTCAATTAT
66 TGATATTAACTAGAACCATTTATTCAATTAT
72561632 GTGTTTTTAA
Statistics
Matches: 84, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
99 84 1.00
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.43
Consensus pattern (99 bp):
AAGTAAAAACGCTTGTTCAATTATGAATTTTTAAAAAAGATAATTTAGTCCAATTTATTGAATTT
TGATATTAACTAGAACCATTTATTCAATTATACA
Found at i:72561740 original size:72 final size:72
Alignment explanation
Indices: 72561536--72561769 Score: 220
Period size: 72 Copynumber: 3.2 Consensus size: 72
72561526 CTATTATACA
* * ** * * * *
72561536 AAGTAAAACCGCTTGTTCAATTATGCGTTTTTAAAAAAGA-TAATTTAGTCCAATTTATTGAATT
1 AAGTAAAACCGTTTATTCAATTATATGTTTTT-AAAAAGACTAAATTAATTCAATTTATTGAGTT
72561600 TTGATATT
65 TTGATATT
* * * * ** * *
72561608 AACTAGAACCGTTTATTCAATTATGTGTTTTTAAAAAGGCTACTTTAGTTCAATTCATTGAGTTT
1 AAGTAAAACCGTTTATTCAATTATATGTTTTTAAAAAGACTAAATTAATTCAATTTATTGAGTTT
72561673 TGATATT
66 TGATATT
* * * * **
72561680 AAGTAAAACGGTTTATTCAAGTTATATG-TTTTGAGAAGATTAAATTAATTTGATTTATTGAGTT
1 AAGTAAAACCGTTTATTCAA-TTATATGTTTTTAAAAAGACTAAATTAATTCAATTTATTGAGTT
72561744 TTGATATT
65 TTGATATT
* *
72561752 AAGTAAAATCATTTATTC
1 AAGTAAAACCGTTTATTC
72561770 GGTAAAATGT
Statistics
Matches: 133, Mismatches: 27, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
71 6 0.05
72 121 0.91
73 6 0.05
ACGTcount: A:0.35, C:0.08, G:0.14, T:0.44
Consensus pattern (72 bp):
AAGTAAAACCGTTTATTCAATTATATGTTTTTAAAAAGACTAAATTAATTCAATTTATTGAGTTT
TGATATT
Found at i:72570833 original size:22 final size:22
Alignment explanation
Indices: 72570805--72570847 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
72570795 CATAACATTA
72570805 ATATGTTTATATATCGATTCAG
1 ATATGTTTATATATCGATTCAG
72570827 ATATGTTTATATATCGATTCA
1 ATATGTTTATATATCGATTCA
72570848 TTAACATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.47
Consensus pattern (22 bp):
ATATGTTTATATATCGATTCAG
Found at i:72573263 original size:10 final size:10
Alignment explanation
Indices: 72573204--72573483 Score: 76
Period size: 10 Copynumber: 28.8 Consensus size: 10
72573194 AATCATAACA
72573204 ATAAAAATATT
1 ATAAAAA-ATT
*
72573215 -TAAAAAATC
1 ATAAAAAATT
*
72573224 AT--AAATTT
1 ATAAAAAATT
* *
72573232 TTAAAAAAAT
1 ATAAAAAATT
*
72573242 AGAAAAAA-T
1 ATAAAAAATT
72573251 ATAAAAAATT
1 ATAAAAAATT
72573261 AT-AAAAATT
1 ATAAAAAATT
*
72573270 AT--TAAA-T
1 ATAAAAAATT
*
72573277 ATTAAAAA-T
1 ATAAAAAATT
*
72573286 AT-GAAAATT
1 ATAAAAAATT
*
72573295 GAT-ATAAATT
1 -ATAAAAAATT
72573305 -T-AAAAATT
1 ATAAAAAATT
*
72573313 ATAAAAAA-A
1 ATAAAAAATT
*
72573322 ATATACAAATT
1 ATA-AAAAATT
72573333 ATTAAAAAATT
1 A-TAAAAAATT
* *
72573344 -TAATAATTT
1 ATAAAAAATT
*
72573353 ATAAAACAA-A
1 ATAAAA-AATT
72573363 ATAATAAAATT
1 ATAA-AAAATT
72573374 AATAAAACATATT
1 -ATAAAA-A-ATT
**
72573387 -TAAAATTTT
1 ATAAAAAATT
***
72573396 ATAAAAGCGT
1 ATAAAAAATT
* *
72573406 ATTAAAATTCT
1 ATAAAAAAT-T
*
72573417 ATAAAAAATC
1 ATAAAAAATT
* *
72573427 ATACACAATT
1 ATAAAAAATT
*
72573437 ATAAAAAAAT
1 ATAAAAAATT
*
72573447 AT-TAAAATT
1 ATAAAAAATT
* *
72573456 AATATAAACTT
1 -ATAAAAAATT
72573467 AT-AAAAATT
1 ATAAAAAATT
72573476 ATAAAAAA
1 ATAAAAAA
72573484 AATCATAAAA
Statistics
Matches: 196, Mismatches: 48, Indels: 51
0.66 0.16 0.17
Matches are distributed among these distances:
7 3 0.02
8 19 0.10
9 51 0.26
10 82 0.42
11 31 0.16
12 7 0.04
13 3 0.02
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (10 bp):
ATAAAAAATT
Found at i:72573276 original size:26 final size:28
Alignment explanation
Indices: 72573247--72573319 Score: 100
Period size: 26 Copynumber: 2.8 Consensus size: 28
72573237 AAAATAGAAA
*
72573247 AAATATAAAAAATTATAAAAATT-AT-T
1 AAATATTAAAAATTATAAAAATTGATAT
*
72573273 AAATATTAAAAA-TATGAAAATTGATAT
1 AAATATTAAAAATTATAAAAATTGATAT
72573300 AAAT-TTAAAAATTATAAAAA
1 AAATATTAAAAATTATAAAAA
72573320 AAATATACAA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
25 9 0.22
26 20 0.49
27 12 0.29
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (28 bp):
AAATATTAAAAATTATAAAAATTGATAT
Found at i:72573325 original size:26 final size:27
Alignment explanation
Indices: 72573247--72573340 Score: 86
Period size: 26 Copynumber: 3.4 Consensus size: 27
72573237 AAAATAGAAA
* *
72573247 AAATATAAAAAATTATAAAAATTAT-T
1 AAATATTAAAAATTATAAAAATAATAT
* *
72573273 AAATATTAAAAA-TATGAAAATTGATAT
1 AAATATTAAAAATTAT-AAAAATAATAT
*
72573300 AAAT-TTAAAAATTATAAAAAAAATAT
1 AAATATTAAAAATTATAAAAATAATAT
72573326 ACAAATTATTAAAAA
1 --AAA-TATTAAAAA
72573341 ATTTAATAAT
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
25 3 0.05
26 33 0.60
27 8 0.15
28 3 0.05
29 1 0.02
30 7 0.13
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (27 bp):
AAATATTAAAAATTATAAAAATAATAT
Done.