Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 214 of 235
Found at i:72573388 original size:82 final size:82
Alignment explanation
Indices: 72573302--72573486 Score: 186
Period size: 82 Copynumber: 2.3 Consensus size: 82
72573292 ATTGATATAA
* *
72573302 ATTTAAAAATTATAAAAAAAATA-TACAAATTAT-TAAAAAAT-TTA-ATAATTTATAAAACAAA
1 ATTTAAAAATTATAAAAAAAATATTA-AAATTATATAAAAAATCATACACAA-TTAT-AAA-AAA
72573363 ATAATAAAATTAATA-AAACAT
62 ATAATAAAATTAATATAAAC-T
* *** *
72573384 ATTT-AAAATTTTATAAAAGCGTATTAAAATTCTATAAAAAATCATACACAATTATAAAAAAATA
1 ATTTAAAAATTATA-AAAAAAATATTAAAATTATATAAAAAATCATACACAATTATAAAAAAATA
*
72573448 TTAAAATTAATATAAACT
65 ATAAAATTAATATAAACT
*
72573466 -TATAAAAATTATAAAAAAAAT
1 ATTTAAAAATTATAAAAAAAAT
72573487 CATAAAAACT
Statistics
Matches: 83, Mismatches: 13, Indels: 15
0.75 0.12 0.14
Matches are distributed among these distances:
81 15 0.18
82 42 0.51
83 17 0.20
84 6 0.07
85 3 0.04
ACGTcount: A:0.62, C:0.05, G:0.01, T:0.32
Consensus pattern (82 bp):
ATTTAAAAATTATAAAAAAAATATTAAAATTATATAAAAAATCATACACAATTATAAAAAAATAA
TAAAATTAATATAAACT
Found at i:72573401 original size:21 final size:20
Alignment explanation
Indices: 72573302--72573422 Score: 70
Period size: 21 Copynumber: 5.8 Consensus size: 20
72573292 ATTGATATAA
* * *
72573302 ATTTAAAAATTATAAAAAAA
1 ATTTAAAATTTATAAAACAT
*
72573322 ATATACAAA-TTATTAAAA-A-
1 ATTTA-AAATTTA-TAAAACAT
*
72573341 ATTTAATAATTTATAAAACAAA
1 ATTTAA-AATTTATAAAAC-AT
* *
72573363 ATAATAAAATTAATAAAACAT
1 AT-TTAAAATTTATAAAACAT
*
72573384 ATTTAAAATTTTATAAAAGCGT
1 ATTTAAAA-TTTATAAAA-CAT
72573406 A-TTAAAATTCTATAAAA
1 ATTTAAAATT-TATAAAA
72573423 AATCATACAC
Statistics
Matches: 82, Mismatches: 8, Indels: 21
0.74 0.07 0.19
Matches are distributed among these distances:
18 1 0.01
19 11 0.13
20 18 0.22
21 33 0.40
22 16 0.20
23 3 0.04
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (20 bp):
ATTTAAAATTTATAAAACAT
Found at i:72573484 original size:41 final size:41
Alignment explanation
Indices: 72573234--72573485 Score: 164
Period size: 41 Copynumber: 6.1 Consensus size: 41
72573224 ATAAATTTTT
** *
72573234 AAAAAAATAGAAAAAAT-ATAAAAAATTATAAAAATTATTAA
1 AAAAAAATATTAAAATTAATAAAAAATTATAAAAATTA-TAA
* * *
72573275 ATATTAAAAATATGAAAATTGAT-ATAAATT-TAAAAATTAT-A
1 A-A--AAAAATATTAAAATTAATAAAAAATTATAAAAATTATAA
* *
72573316 AAAAAAATA-TACAAATTATTAAAAAATT-TAATAATTTATAA
1 AAAAAAATATTA-AAATTAATAAAAAATTATAA-AAATTATAA
* * * *
72573357 AACAAAATAATAAAATTAATAAAACATATT-T-AAAATTTTAT
1 AAAAAAATATTAAAATTAATAAAA-A-ATTATAAAAATTATAA
*** * * *
72573398 AAAAGCGTATTAAAATTCTATAAAAAATCATACACAATTAT--
1 AAAAAAATATTAAAATT-AATAAAAAATTATA-AAAATTATAA
* *
72573439 AAAAAAATATTAAAATTAATATAAACTTATAAAAATTATAA
1 AAAAAAATATTAAAATTAATAAAAAATTATAAAAATTATAA
72573480 AAAAAA
1 AAAAAA
72573486 TCATAAAAAC
Statistics
Matches: 163, Mismatches: 31, Indels: 34
0.71 0.14 0.15
Matches are distributed among these distances:
37 1 0.01
38 13 0.08
39 16 0.10
40 19 0.12
41 63 0.39
42 12 0.07
43 19 0.12
44 18 0.11
45 2 0.01
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (41 bp):
AAAAAAATATTAAAATTAATAAAAAATTATAAAAATTATAA
Found at i:72573484 original size:61 final size:59
Alignment explanation
Indices: 72573307--72573493 Score: 166
Period size: 61 Copynumber: 3.1 Consensus size: 59
72573297 TATAAATTTA
* * * *
72573307 AAAATTATAAAAAAA-ATATACAAATTATTAAAAAATT-TAATAATTTATAAAACAAAATAAT
1 AAAATTATAAAAAAATAT-TA-AAATTATTATAAACTTATAA-AAATTATAAAA-AAAATCAT
* * * * *
72573368 AAAATTA-ATAAAACATATTTAAAATT-TTATAAAAGCGTATTAAAATTCTATAAAAAATCAT
1 AAAATTATA-AAAAAATA-TTAAAATTATTAT-AAA-CTTATAAAAATTATAAAAAAAATCAT
*
72573429 ACACAATTATAAAAAAATATTAAAATTAATATAAACTTATAAAAATTATAAAAAAAATCAT
1 A-A-AATTATAAAAAAATATTAAAATTATTATAAACTTATAAAAATTATAAAAAAAATCAT
72573490 AAAA
1 AAAA
72573494 ACTTGAACTG
Statistics
Matches: 101, Mismatches: 15, Indels: 22
0.73 0.11 0.16
Matches are distributed among these distances:
59 2 0.02
60 5 0.05
61 51 0.50
62 24 0.24
63 18 0.18
64 1 0.01
ACGTcount: A:0.63, C:0.05, G:0.01, T:0.31
Consensus pattern (59 bp):
AAAATTATAAAAAAATATTAAAATTATTATAAACTTATAAAAATTATAAAAAAAATCAT
Found at i:72574040 original size:11 final size:11
Alignment explanation
Indices: 72573999--72574042 Score: 51
Period size: 9 Copynumber: 4.4 Consensus size: 11
72573989 TTTTTTTATA
72573999 TTTTTAA-AA-
1 TTTTTAATAAT
72574008 TTTTTAA-AA-
1 TTTTTAATAAT
72574017 TTTTTAATAAT
1 TTTTTAATAAT
*
72574028 TTTTTAATCAT
1 TTTTTAATAAT
72574039 TTTT
1 TTTT
72574043 ATGAGAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
9 16 0.50
10 2 0.06
11 14 0.44
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (11 bp):
TTTTTAATAAT
Found at i:72574043 original size:10 final size:9
Alignment explanation
Indices: 72573998--72574031 Score: 59
Period size: 9 Copynumber: 3.7 Consensus size: 9
72573988 ATTTTTTTAT
72573998 ATTTTTAAA
1 ATTTTTAAA
72574007 ATTTTTAAA
1 ATTTTTAAA
72574016 ATTTTTAATA
1 ATTTTTAA-A
72574026 ATTTTT
1 ATTTTT
72574032 TAATCATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 17 0.71
10 7 0.29
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (9 bp):
ATTTTTAAA
Found at i:72585339 original size:7 final size:7
Alignment explanation
Indices: 72585327--72585351 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
72585317 TTATCATGAC
72585327 ACAAGGT
1 ACAAGGT
72585334 ACAAGGT
1 ACAAGGT
72585341 ACAAGGT
1 ACAAGGT
72585348 ACAA
1 ACAA
72585352 TTAGTTGCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.16, G:0.24, T:0.12
Consensus pattern (7 bp):
ACAAGGT
Found at i:72587822 original size:21 final size:22
Alignment explanation
Indices: 72587798--72587838 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
72587788 TCTGTAAGTA
*
72587798 TTCATGTTCAAATA-TATTTGT
1 TTCATGTTAAAATACTATTTGT
*
72587819 TTCATTTTAAAATACTATTT
1 TTCATGTTAAAATACTATTT
72587839 TCTTTATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.32, C:0.10, G:0.05, T:0.54
Consensus pattern (22 bp):
TTCATGTTAAAATACTATTTGT
Found at i:72591482 original size:21 final size:21
Alignment explanation
Indices: 72591457--72591497 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
72591447 GACGAGATTA
72591457 AAAAACAAAAAAAATGAAATG
1 AAAAACAAAAAAAATGAAATG
* **
72591478 AAAAATAAAAATGATGAAAT
1 AAAAACAAAAAAAATGAAAT
72591498 TGGTAATGGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.73, C:0.02, G:0.10, T:0.15
Consensus pattern (21 bp):
AAAAACAAAAAAAATGAAATG
Found at i:72592419 original size:5 final size:5
Alignment explanation
Indices: 72592358--72592405 Score: 78
Period size: 5 Copynumber: 9.4 Consensus size: 5
72592348 TGAACCTTGC
*
72592358 CTTTAA CTTTA TTTTA CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA CT
1 CTTT-A CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA CT
72592406 ATAATTTAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
5 36 0.90
6 4 0.10
ACGTcount: A:0.21, C:0.19, G:0.00, T:0.60
Consensus pattern (5 bp):
CTTTA
Found at i:72592866 original size:15 final size:15
Alignment explanation
Indices: 72592842--72592871 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
72592832 CTCCGACTTT
72592842 TTGGTCTTAAGAATG
1 TTGGTCTTAAGAATG
*
72592857 TTGGTTTTAAGAATG
1 TTGGTCTTAAGAATG
72592872 ATTGATTGTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.03, G:0.27, T:0.43
Consensus pattern (15 bp):
TTGGTCTTAAGAATG
Found at i:72597199 original size:16 final size:17
Alignment explanation
Indices: 72597180--72597214 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
72597170 TTTTTTTATT
72597180 TTTTAAAGTTTTAA-AA
1 TTTTAAAGTTTTAAGAA
*
72597196 TTTTAAATTTTTAAGAA
1 TTTTAAAGTTTTAAGAA
72597213 TT
1 TT
72597215 AAGACTAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (17 bp):
TTTTAAAGTTTTAAGAA
Found at i:72597289 original size:60 final size:60
Alignment explanation
Indices: 72597203--72597319 Score: 150
Period size: 60 Copynumber: 1.9 Consensus size: 60
72597193 AAATTTTAAA
72597203 TTTTTAAGAATTAAGACTAATGTGATAGAA-CGTGTAAAGT-TGAGAGCTAAATTTGTTGAC
1 TTTTTAAGAATTAAGACTAATGTGATAGAATC-TGTAAA-TATGAGAGCTAAATTTGTTGAC
* * **
72597263 TTTTTTAGATTTAAGACTAAAT-TGATAGAATCTGTAAATATTTGAGCTAAATTTGTT
1 TTTTTAAGAATTAAGACT-AATGTGATAGAATCTGTAAATATGAGAGCTAAATTTGTT
72597320 CTTATGCTAA
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
59 1 0.02
60 45 0.90
61 4 0.08
ACGTcount: A:0.36, C:0.06, G:0.18, T:0.40
Consensus pattern (60 bp):
TTTTTAAGAATTAAGACTAATGTGATAGAATCTGTAAATATGAGAGCTAAATTTGTTGAC
Found at i:72597537 original size:17 final size:19
Alignment explanation
Indices: 72597501--72597537 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
72597491 ATAATCATAG
72597501 ATCTATTAAAGTTATAATT
1 ATCTATTAAAGTTATAATT
*
72597520 ATCT-TTAAA-TTTTAATT
1 ATCTATTAAAGTTATAATT
72597537 A
1 A
72597538 CCAAATAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 8 0.47
18 5 0.29
19 4 0.24
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (19 bp):
ATCTATTAAAGTTATAATT
Found at i:72597909 original size:69 final size:69
Alignment explanation
Indices: 72597798--72597937 Score: 253
Period size: 69 Copynumber: 2.0 Consensus size: 69
72597788 TCTAAAACAC
*
72597798 TAATGAAGTTTTCTCCCAATAACGCGTTGCCAATTGTAAAGGAGATGGTCAAGGATTTTAACGCG
1 TAATGAAGTTTTCTCCCAACAACGCGTTGCCAATTGTAAAGGAGATGGTCAAGGATTTTAACGCG
72597863 GGCA
66 GGCA
* *
72597867 TAATGAAGTTTTCTCTCAACAACGCGTTGCCAATTGTAAAGGAGATGGTCAGGGATTTTAACGCG
1 TAATGAAGTTTTCTCCCAACAACGCGTTGCCAATTGTAAAGGAGATGGTCAAGGATTTTAACGCG
72597932 GGCA
66 GGCA
72597936 TA
1 TA
72597938 GGTTCGATAC
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (69 bp):
TAATGAAGTTTTCTCCCAACAACGCGTTGCCAATTGTAAAGGAGATGGTCAAGGATTTTAACGCG
GGCA
Found at i:72598787 original size:6 final size:6
Alignment explanation
Indices: 72598769--72598805 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
72598759 AACTGAAGAT
*
72598769 TCTCTA TCCCTA TCTCTA TCTCTA TCTCTA TCTCTA T
1 TCTCTA TCTCTA TCTCTA TCTCTA TCTCTA TCTCTA T
72598806 AAAAATAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.16, C:0.35, G:0.00, T:0.49
Consensus pattern (6 bp):
TCTCTA
Found at i:72603459 original size:30 final size:30
Alignment explanation
Indices: 72603423--72603535 Score: 199
Period size: 30 Copynumber: 3.8 Consensus size: 30
72603413 ACTTTTCTCA
72603423 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
72603453 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
72603483 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
72603513 ACTAGCCACTCTTTTTCCACCAC
1 ACTAGCCACTCCTTTTCCACCAC
72603536 TGATGAAGAG
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 80 1.00
ACGTcount: A:0.24, C:0.48, G:0.04, T:0.25
Consensus pattern (30 bp):
ACTAGCCACTCCTTTTCCACCACCAACTCC
Found at i:72604900 original size:14 final size:13
Alignment explanation
Indices: 72604869--72604900 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
72604859 TTTTGAAAAA
*
72604869 TAAAAACTGACAT
1 TAAAAACTGAAAT
72604882 TAAAAACTGAAAT
1 TAAAAACTGAAAT
72604895 TAAAAA
1 TAAAAA
72604901 TAGCTCAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.62, C:0.09, G:0.06, T:0.22
Consensus pattern (13 bp):
TAAAAACTGAAAT
Found at i:72605333 original size:88 final size:87
Alignment explanation
Indices: 72604980--72605648 Score: 592
Period size: 88 Copynumber: 7.7 Consensus size: 87
72604970 AGAAATTAAA
*
72604980 AGGCTCAACTCACCTCTTGCAATATGAGTT-G-ATTTTTG-AAAACATG-AATTAAAACAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGGTATTTTTGAAAAACA-GAAATTAAAACAGAAAT
*
72605041 TGGAAA-TACCTCAG-GATGTGAGCC-A
65 T-GAAATTACCTCAGCG-TGT---CCTG
* * *** *
72605066 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGTAAAAATTGAAAAACAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTG--GTATTTTTGAAAAACAGAAATT--AAAAC--A
* *
72605131 AAAATTGAAATTACCTCAGCGTGTCCTA
60 GAAATTGAAATTACCTCAGCGTGTCCTG
* * * * * *
72605159 AGGCTCAACCCACCTCTCGCAATATGAGCTGATTTTTTTGGAAAAACAAAAATTAAAGACAAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGGTATTTTT-GAAAAACAGAAATTAAA-ACAGAAA
*
72605224 TTGAAATTACCTCAGCATGTCCTG
64 TTGAAATTACCTCAGCGTGTCCTG
* *
72605248 AGGCTCAACTCACCTCTCGTAATATGAGTTGGTTTTTTTGAAAAACAGAAATTAAAGACAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGGTATTTTTGAAAAACAGAAATTAAA-ACAGAAAT
72605313 TGAAATTACCTCAGCGTGTCCTG
65 TGAAATTACCTCAGCGTGTCCTG
*
72605336 AGGCTCAACTTACCTCTCGCAATATGAGTT-G-ATTTTTG-AAAACATG-AA--AAAACAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGGTATTTTTGAAAAACA-GAAATTAAAACAGAAAT
72605395 TGAAATTACCTCAGCGTGTCCTG
65 TGAAATTACCTCAGCGTGTCCTG
** * *
72605418 AGGCTCAACTCACCTCTCGCAATATGAGTT--TATTTTTGAAAAGTATAAATTGGAAAAATAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGGTATTTTTGAAAAACAGAAATT---AAAACAGAA
*
72605481 ATTGAAAATACCTCAGCGTGTCCTG
63 ATTGAAATTACCTCAGCGTGTCCTG
* * * * ** *
72605506 AGGCTCAACTCACTTCTCGTAACATGAGTT-G-A-TTTGGAAAAGTAGAAATTAAAA-ATGGAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGGTATTTTTGAAAAACAGAAATTAAAACA--GAAA
** * * *
72605567 TTGAAAACACCTCGGCATGTGACCCG
64 TTGAAATTACCTCAGC--GTGTCCTG
* * * *
72605593 AGGGCTCAACTCACTTCTAGCAATATGAGTT-G-ATTTCTG-AGAACAGAAA-TAAAACA
1 A-GGCTCAACTCACCTCTCGCAATATGAGTTGGTATTTTTGAAAAACAGAAATTAAAACA
72605649 TCAAAATACC
Statistics
Matches: 501, Mismatches: 50, Indels: 62
0.82 0.08 0.10
Matches are distributed among these distances:
82 67 0.13
83 10 0.02
84 4 0.01
85 25 0.05
86 36 0.07
87 29 0.06
88 170 0.34
89 65 0.13
90 9 0.02
91 16 0.03
92 13 0.03
93 35 0.07
94 4 0.01
95 17 0.03
96 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (87 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGGTATTTTTGAAAAACAGAAATTAAAACAGAAATT
GAAATTACCTCAGCGTGTCCTG
Found at i:72605483 original size:170 final size:170
Alignment explanation
Indices: 72604980--72605540 Score: 673
Period size: 170 Copynumber: 3.2 Consensus size: 170
72604970 AGAAATTAAA
*
72604980 AGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAACATGAATTAAAACAGAAATTGGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATGAA-TAAAACAGAAATT-GA
*
72605045 AA-TACCTCAG-GATGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTT
64 AATTACCTCAGCG-TGT---CCTGAGGCTCAACTCACCTCTCGCAATATGA---G-TTTTTTTTT
* * *
72605107 GAAAGGTAAAAATTGAAAAACAAAAAAATTGAAATTACCTCAGCGTGTCCTA
121 GAAAAGTAAAAATTG-AAAA-AAAGAAATTGAAATTACCTCAGCGTGTCCTG
* * ** *
72605159 AGGCTCAACCCACCTCTCGCAATATGAGCTGATTTTTTTGGAAAAACAAAAATTAAAGACAAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTT-G-AAAACATGAA-TAAA-ACAGAAA
* *
72605224 TTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGGTTTTTTTGA
60 TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT--TTTTTTTGA
** * * *
72605289 AAAACAGAAATT-AAAGACAGAAATTGAAATTACCTCAGCGTGTCCTG
123 AAAGTAAAAATTGAAAAAAAGAAATTGAAATTACCTCAGCGTGTCCTG
*
72605336 AGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTGAAAACATGAA-AAAACAGAAATTGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATGAATAAAACAGAAATTGAAA
* *
72605400 TTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTTATTTTTGAAAAGTATA
66 TTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTTTTTTTTGAAAAGTAAA
* *
72605465 AATTGGAAAAATAGAAATTGAAAATACCTCAGCGTGTCCTG
131 AATT-GAAAAAAAGAAATTGAAATTACCTCAGCGTGTCCTG
* * *
72605506 AGGCTCAACTCACTTCTCGTAACATGAGTTGATTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
72605541 GGAAAAGTAG
Statistics
Matches: 334, Mismatches: 36, Indels: 33
0.83 0.09 0.08
Matches are distributed among these distances:
168 17 0.05
170 121 0.36
171 3 0.01
173 8 0.02
174 1 0.00
175 5 0.01
177 57 0.17
178 5 0.01
179 30 0.09
180 17 0.05
181 7 0.02
182 27 0.08
183 17 0.05
184 19 0.06
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (170 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATGAATAAAACAGAAATTGAAA
TTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTTTTTTTTGAAAAGTAAA
AATTGAAAAAAAGAAATTGAAATTACCTCAGCGTGTCCTG
Found at i:72605601 original size:258 final size:256
Alignment explanation
Indices: 72604980--72605641 Score: 640
Period size: 258 Copynumber: 2.5 Consensus size: 256
72604970 AGAAATTAAA
* * * * *
72604980 AGGCTCAACTCACCTCTTGCAATATGAGTTGAT-TTTTG-AAAACATG-AATT-AAAACAGAAAT
1 AGGCTCAACTCACCTCTCGTAACATGAGTTGGTATTTGGAAAAACA-GAAATTAAAAACAGAAAT
* * * * * * *
72605041 TGGAAATACCTCAGGATGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT
65 TGAAAACACCTCA-G-CGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGA----TTTC
* * *
72605106 TGAAAGGTAAAAATTGAAAAACAAAAAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACCCA
124 TG--A---AAACA--GAAAAA-ACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACCCA
* *
72605171 CCTCTCGCAATATGAGCTGATTTTTTTGGAAAAACAAAAATTAAAGACAAAAATTGAAATTACCT
181 CCTCTCGCAATATGAGCT-ATTTTTTTGGAAAAACAAAAATTAAAAACAAAAATTGAAAATACCT
72605236 CAGCATGTCCTG
245 CAGCATGTCCTG
* * * *
72605248 AGGCTCAACTCACCTCTCGTAATATGAGTTGGTTTTTTTGAAAAACAGAAATTAAAGACAGAAAT
1 AGGCTCAACTCACCTCTCGTAACATGAGTTGG-TATTTGGAAAAACAGAAATTAAAAACAGAAAT
** * * * * *
72605313 TGAAATTACCTCAGCGTGTCCTGAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTGAAAA
65 TGAAAACACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTCTGAAAA
* *
72605378 CATGAAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
130 CA-GAAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACCCACCTCTCGCAATAT
** * * * *
72605443 GAG-T-TTATTTTT-GAAAAGTATAAATTGGAAAAATAGAAATTGAAAATACCTCAGCGTGTCCT
194 GAGCTATT-TTTTTGGAAAAACAAAAATT--AAAAACAAAAATTGAAAATACCTCAGCATGTCCT
72605505 G
256 G
* ** ** *
72605506 AGGCTCAACTCACTTCTCGTAACATGAGTT-G-ATTTGGAAAAGTAGAAATTAAAAATGGAATTT
1 AGGCTCAACTCACCTCTCGTAACATGAGTTGGTATTTGGAAAAACAGAAATTAAAAACAGAAATT
* * *
72605569 GAAAACACCTCGGCATGTGACCCGAGGGCTCAACTCACTTCTAGCAATATGAGTTGATTTCTGAG
66 GAAAACACCTCAGC--GTGACCCGA-GGCTCAACTCACCTCTAGCAATATGAGTTGATTTCTGAA
72605634 AACAGAAA
128 AACAGAAA
72605642 TAAAACATCA
Statistics
Matches: 338, Mismatches: 45, Indels: 33
0.81 0.11 0.08
Matches are distributed among these distances:
255 35 0.10
256 13 0.04
257 17 0.05
258 97 0.29
259 55 0.16
260 7 0.02
261 4 0.01
264 1 0.00
266 6 0.02
268 29 0.09
269 1 0.00
270 41 0.12
271 11 0.03
272 21 0.06
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (256 bp):
AGGCTCAACTCACCTCTCGTAACATGAGTTGGTATTTGGAAAAACAGAAATTAAAAACAGAAATT
GAAAACACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTCTGAAAAC
AGAAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACCCACCTCTCGCAATATGA
GCTATTTTTTTGGAAAAACAAAAATTAAAAACAAAAATTGAAAATACCTCAGCATGTCCTG
Found at i:72607028 original size:37 final size:37
Alignment explanation
Indices: 72606964--72607109 Score: 211
Period size: 37 Copynumber: 3.9 Consensus size: 37
72606954 AGCTCAGACG
* *
72606964 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
72607001 AAATCTCCACACGTAGTCATCGAGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
72607038 TACTCTCCACACATAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
** *
72607075 TGATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
72607110 ATATATTTCC
Statistics
Matches: 98, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:72607323 original size:47 final size:47
Alignment explanation
Indices: 72607272--72607504 Score: 385
Period size: 47 Copynumber: 5.0 Consensus size: 47
72607262 TTCCACACTA
* * * * *
72607272 GCCATCCGGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * *
72607319 GCCATTCGGCCTTATCACACATATGCATGCTCACGTTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
72607366 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
72607413 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
72607460 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
72607505 AAAATCCTAA
Statistics
Matches: 173, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 173 1.00
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:72607336 original size:25 final size:25
Alignment explanation
Indices: 72607308--72607383 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
72607298 ATGTTCATAT
72607308 TCACCACATTGGCCATTCGGCCTTA
1 TCACCACATTGGCCATTCGGCCTTA
* * *
72607333 TCA-CACATAT-G-CATGC-TCACGT-
1 TCACCACAT-TGGCCATTCGGC-CTTA
*
72607355 TCATCACATTGGCCATTCGGCCTTA
1 TCACCACATTGGCCATTCGGCCTTA
72607380 TCAC
1 TCAC
72607384 ATATATGCAT
Statistics
Matches: 37, Mismatches: 7, Indels: 14
0.64 0.12 0.24
Matches are distributed among these distances:
22 5 0.14
23 12 0.32
24 12 0.32
25 8 0.22
ACGTcount: A:0.22, C:0.34, G:0.14, T:0.29
Consensus pattern (25 bp):
TCACCACATTGGCCATTCGGCCTTA
Found at i:72607384 original size:22 final size:22
Alignment explanation
Indices: 72607357--72607479 Score: 65
Period size: 22 Copynumber: 5.3 Consensus size: 22
72607347 GCTCACGTTC
72607357 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
72607379 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
*
72607403 CATCACATAGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
72607426 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
72607450 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
72607473 ATCACAT
1 ATCACAT
72607480 ATATGCATGT
Statistics
Matches: 73, Mismatches: 14, Indels: 28
0.63 0.12 0.24
Matches are distributed among these distances:
22 27 0.37
23 13 0.18
24 13 0.18
25 20 0.27
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:72607536 original size:94 final size:90
Alignment explanation
Indices: 72607339--72607525 Score: 252
Period size: 94 Copynumber: 2.0 Consensus size: 90
72607329 CTTATCACAC
* *
72607339 ATATGCATGCTCACGTTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTC
1 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTC
* * * *
72607404 ATCACATAGGCCATTCGGCCTTATCACAT
66 ATCACATA-G-AAAT--GCCTAATCAAAT
72607433 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTC
1 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTC
72607498 ATCACATA-AAAT-CCTAAATCAAAAT
66 ATCACATAGAAATGCCT-AATC-AAAT
72607523 ATA
1 ATA
72607526 AATTTTCATG
Statistics
Matches: 85, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
88 3 0.04
89 3 0.04
90 6 0.07
91 2 0.02
94 71 0.84
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.32
Consensus pattern (90 bp):
ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTC
ATCACATAGAAATGCCTAATCAAAT
Found at i:72610527 original size:6 final size:7
Alignment explanation
Indices: 72610510--72610544 Score: 61
Period size: 7 Copynumber: 4.9 Consensus size: 7
72610500 TGATCCCCTT
72610510 TTTTTTC
1 TTTTTTC
72610517 TTTTTTC
1 TTTTTTC
72610524 TTTTTTC
1 TTTTTTC
72610531 TTTTTTC
1 TTTTTTC
72610538 TCTTTTT
1 T-TTTTT
72610545 TTTAAGATGC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 22 0.81
8 5 0.19
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTTC
Found at i:72622169 original size:363 final size:363
Alignment explanation
Indices: 72621499--72622223 Score: 1315
Period size: 363 Copynumber: 2.0 Consensus size: 363
72621489 GTGTGATCGA
* *
72621499 ACACTTATTAGATTTATGTTTTTAAAAACAAAAGAAGGCTGAGTTTGGGTCCACGTCAAAATCTA
1 ACACCTATTAGATTTATGTTTTTAAAAACAAAAGAAGGCTGAGTTTGGGTCCACGTCAAAATCCA
*
72621564 GAGAAAAAGTAGGGTTCGGGAGTCGGTTACGCACGAGAAAGGTATTAGCACCCTCACGACGCCCA
66 GAGAAAAAGTAGGGCTCGGGAGTCGGTTACGCACGAGAAAGGTATTAGCACCCTCACGACGCCCA
* * *
72621629 AAATTGGTATCTCATAAACATGTGTTGTCTTGATTTTCAAAAATACGGGTTCAATATAAGATTTA
131 AAATTGGTATATCATAAACATGTGTTCTCTTGATTTTCAAAAATACAGGTTCAATATAAGATTTA
*
72621694 ATCGTGATTCGATTGAAAAGACAAGAAATTTTAGTTTTTGGTTTTTTAGAAGGGTGTTCCGTCTT
196 ATCGTGATTCGATTGAAAAGACAAGAAATTTTAGTTTTTGGTTTTTTAGAAGGATGTTCCGTCTT
* *
72621759 TAACACGAGCCGACAAATTCCATCCAACATAGCGATGAAATTCGATGATTTAATATTAAATCGGT
261 TAACACGAGCCGACAAATTCCATCCAACATAGCGATGAAATTCGATGACTTAATATTAAATCGAT
72621824 ACATTGCCTTGATTATTGAAATTAATTAGAAAACACGG
326 ACATTGCCTTGATTATTGAAATTAATTAGAAAACACGG
72621862 ACACCTATTAGATTTATGTTTTTAAAAACAAAAGAAGGCTGAGTTTGGGTCCACGTCAAAATCCA
1 ACACCTATTAGATTTATGTTTTTAAAAACAAAAGAAGGCTGAGTTTGGGTCCACGTCAAAATCCA
*** * **
72621927 GAGAAAAAGTAGGGCTCGGGAGTCGGTTACGGGTGAGGAAGGTATTAGCACCCTTGCGACGCCCA
66 GAGAAAAAGTAGGGCTCGGGAGTCGGTTACGCACGAGAAAGGTATTAGCACCCTCACGACGCCCA
72621992 AAATTGGTATATCATAAACATGTGTTCTCTTGATTTTCAAAAATACAGGTTCAATATAAGATTTA
131 AAATTGGTATATCATAAACATGTGTTCTCTTGATTTTCAAAAATACAGGTTCAATATAAGATTTA
72622057 ATCGTGATTCGATTGAAAAGACAAGAAATTTTAGTTTTTGGTTTTTTAGAAGGATGTTCCGTCTT
196 ATCGTGATTCGATTGAAAAGACAAGAAATTTTAGTTTTTGGTTTTTTAGAAGGATGTTCCGTCTT
72622122 TAACACGAGCCGACAAATTCCATCCAACATAGCGATGAAATTCGATGACTTAATATTAAATCGAT
261 TAACACGAGCCGACAAATTCCATCCAACATAGCGATGAAATTCGATGACTTAATATTAAATCGAT
72622187 ACATTGCCTTGATTATTGAAATTAATTAGAAAACACG
326 ACATTGCCTTGATTATTGAAATTAATTAGAAAACACG
72622224 AACGAGATTT
Statistics
Matches: 347, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
363 347 1.00
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (363 bp):
ACACCTATTAGATTTATGTTTTTAAAAACAAAAGAAGGCTGAGTTTGGGTCCACGTCAAAATCCA
GAGAAAAAGTAGGGCTCGGGAGTCGGTTACGCACGAGAAAGGTATTAGCACCCTCACGACGCCCA
AAATTGGTATATCATAAACATGTGTTCTCTTGATTTTCAAAAATACAGGTTCAATATAAGATTTA
ATCGTGATTCGATTGAAAAGACAAGAAATTTTAGTTTTTGGTTTTTTAGAAGGATGTTCCGTCTT
TAACACGAGCCGACAAATTCCATCCAACATAGCGATGAAATTCGATGACTTAATATTAAATCGAT
ACATTGCCTTGATTATTGAAATTAATTAGAAAACACGG
Found at i:72623070 original size:16 final size:14
Alignment explanation
Indices: 72623032--72623063 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
72623022 ATATGTAAAA
*
72623032 GAAAATATATGCAT
1 GAAAATATATACAT
72623046 GAAAATATATACAT
1 GAAAATATATACAT
72623060 GAAA
1 GAAA
72623064 TATTATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.56, C:0.06, G:0.12, T:0.25
Consensus pattern (14 bp):
GAAAATATATACAT
Found at i:72623172 original size:49 final size:45
Alignment explanation
Indices: 72623047--72623174 Score: 141
Period size: 49 Copynumber: 2.7 Consensus size: 45
72623037 TATATGCATG
*
72623047 AAAATATATACATGAAATATTATAAAAATATATAACTACGATACT
1 AAAATATATACATGAAATATTATAAAAATATATAACTACAATACT
* * *
72623092 AAAGTATATACATGAAATAATGTATAAAAAATATATTACTAATAATA-T
1 AAAATATATACATGAAAT-AT-TAT-AAAAATATATAACT-ACAATACT
72623140 CAAAATATATACATGATAATATATATATAAAATAT
1 -AAAATATATACATGA-AATAT-TATA-AAAATAT
72623175 TAGAAAATAT
Statistics
Matches: 70, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
45 17 0.24
46 2 0.03
47 3 0.04
48 15 0.21
49 30 0.43
50 3 0.04
ACGTcount: A:0.56, C:0.06, G:0.05, T:0.33
Consensus pattern (45 bp):
AAAATATATACATGAAATATTATAAAAATATATAACTACAATACT
Found at i:72623629 original size:3 final size:3
Alignment explanation
Indices: 72623573--72623610 Score: 67
Period size: 3 Copynumber: 12.3 Consensus size: 3
72623563 AAAAAATATA
72623573 AAT ATAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
72623611 GAGATGGCAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 31 0.91
4 3 0.09
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:72623641 original size:15 final size:15
Alignment explanation
Indices: 72623619--72623652 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
72623609 TAGAGATGGC
*
72623619 AATA-AATAATAGTA
1 AATATAATAATAGAA
72623633 AATATAATAATAGAA
1 AATATAATAATAGAA
72623648 AATAT
1 AATAT
72623653 CAAAATTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (15 bp):
AATATAATAATAGAA
Found at i:72625284 original size:26 final size:26
Alignment explanation
Indices: 72625255--72625362 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
72625245 TGATACAAAT
72625255 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
72625281 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
72625307 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
72625333 TGATAATGGTTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
72625359 TGAT
1 TGAT
72625363 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:72626955 original size:19 final size:22
Alignment explanation
Indices: 72626913--72626952 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
72626903 CATGTTTGAC
*
72626913 TGTTGTTATTTACTGCATGCCA
1 TGTTGTTATATACTGCATGCCA
72626935 TGTTGTTATAT-CTG-ATGC
1 TGTTGTTATATACTGCATGC
72626953 ATGGGATTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 3 0.18
22 10 0.59
ACGTcount: A:0.17, C:0.15, G:0.20, T:0.47
Consensus pattern (22 bp):
TGTTGTTATATACTGCATGCCA
Found at i:72627141 original size:21 final size:21
Alignment explanation
Indices: 72627093--72627141 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
72627083 ATTTCCCACA
72627093 TGGAGTGTAAGGCTGGTACGGG
1 TGGAGTGTAAGGCTGGTA-GGG
*
72627115 TGGAGTGTAATGGTTGGT-GGG
1 TGGAGTGTAA-GGCTGGTAGGG
*
72627136 TTGAGT
1 TGGAGT
72627142 AGTCTCCCCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 8 0.33
22 10 0.42
23 6 0.25
ACGTcount: A:0.16, C:0.04, G:0.49, T:0.31
Consensus pattern (21 bp):
TGGAGTGTAAGGCTGGTAGGG
Found at i:72629485 original size:53 final size:53
Alignment explanation
Indices: 72629391--72629503 Score: 154
Period size: 53 Copynumber: 2.1 Consensus size: 53
72629381 GTTTCGATAG
* * ** * *
72629391 TTTAATTATGTTTTATTTGTAAGAAAGAATATTGTTGGTCTTGAGCAAAATCA
1 TTTAATTATGTATTATTTGTAAGAAACAATATTGTCAGTCTTCAACAAAATCA
* *
72629444 TTTAATTATGTATTATTTGTAAGACACAATTTTGTCAGTCTTCAACAAAATCA
1 TTTAATTATGTATTATTTGTAAGAAACAATATTGTCAGTCTTCAACAAAATCA
72629497 TTTAATT
1 TTTAATT
72629504 TTTTAGTATT
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.44
Consensus pattern (53 bp):
TTTAATTATGTATTATTTGTAAGAAACAATATTGTCAGTCTTCAACAAAATCA
Found at i:72629882 original size:16 final size:16
Alignment explanation
Indices: 72629861--72629896 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
72629851 AAGACATTTT
*
72629861 TAAAAGAAATAAAAAA
1 TAAAAGAAACAAAAAA
*
72629877 TAAAAGAACCAAAAAA
1 TAAAAGAAACAAAAAA
72629893 TAAA
1 TAAA
72629897 TATAAAAATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.78, C:0.06, G:0.06, T:0.11
Consensus pattern (16 bp):
TAAAAGAAACAAAAAA
Found at i:72638151 original size:11 final size:10
Alignment explanation
Indices: 72638135--72638176 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
72638125 TATTTTGCCT
*
72638135 AAAAAAAGGA
1 AAAAAAAGAA
72638145 AAAAAAAGAA
1 AAAAAAAGAA
72638155 AAAAAAA-AGA
1 AAAAAAAGA-A
*
72638165 AAGAAAAGAA
1 AAAAAAAGAA
72638175 AA
1 AA
72638177 GAGGAGAGGC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
9 1 0.04
10 26 0.93
11 1 0.04
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:72638160 original size:20 final size:20
Alignment explanation
Indices: 72638135--72638176 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
72638125 TATTTTGCCT
*
72638135 AAAAAAAGGAAAAAAAAGAA
1 AAAAAAAAGAAAAAAAAGAA
*
72638155 AAAAAAAAGAAAGAAAAGAA
1 AAAAAAAAGAAAAAAAAGAA
72638175 AA
1 AA
72638177 GAGGAGAGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (20 bp):
AAAAAAAAGAAAAAAAAGAA
Found at i:72638162 original size:15 final size:16
Alignment explanation
Indices: 72638144--72638176 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
72638134 TAAAAAAAGG
72638144 AAAAAAAAGAAAA-AA
1 AAAAAAAAGAAAAGAA
*
72638159 AAAAGAAAGAAAAGAA
1 AAAAAAAAGAAAAGAA
72638175 AA
1 AA
72638177 GAGGAGAGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (16 bp):
AAAAAAAAGAAAAGAA
Found at i:72639544 original size:43 final size:43
Alignment explanation
Indices: 72639478--72639721 Score: 179
Period size: 43 Copynumber: 5.6 Consensus size: 43
72639468 GTGATGAGCT
*
72639478 TTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGACC
1 TTAAACCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGACC
* * * * * *
72639521 TTAAACCCCTAAGCAATAAGGTAATAGGCTGAATTTACAGATC
1 TTAAACCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGACC
* * * * * * *
72639564 TT-AACCCCATAAACAGTAGGGAAAC-AGATCGAAGGTGA-TGAGCT
1 TTAAACCCC-TAAGCAGTAGGGTAACAAG-CCGAA-TTTACAGA-CC
* * * *
72639608 TTAACCCCCTAAGCAATAGTGTAACAAGCCGAACTTACAGACC
1 TTAAACCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGACC
* * * * *
72639651 TTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTCCAAATC
1 TTAAACCCCTAAGCAGTAGGGTAACAAGCCG-A-ATTTACAGACC
* * *
72639696 TTAACCCCCTAAGTAGTAGGGAAACA
1 TTAAACCCCTAAGCAGTAGGGTAACA
72639722 GATCAAAGAC
Statistics
Matches: 150, Mismatches: 42, Indels: 16
0.72 0.20 0.08
Matches are distributed among these distances:
42 7 0.05
43 83 0.55
44 23 0.15
45 37 0.25
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.20
Consensus pattern (43 bp):
TTAAACCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGACC
Found at i:72639653 original size:130 final size:130
Alignment explanation
Indices: 72639420--72639725 Score: 477
Period size: 130 Copynumber: 2.3 Consensus size: 130
72639410 CCTAGATCGG
* *
72639420 TGAATTTACAGATATTAACCCCCTAAATAGTAGGGAAACATATCGAAGGTGATGAGCTTTAACCC
1 TGAATTTACAGATCTTAACCCCCTAAATAGTAGGGAAACAGATCGAAGGTGATGAGCTTTAACCC
* * *
72639485 CCTAAGCAGTAGGGTAACAAGCCGAATTTACAGACCTTAAACCCCTAAGCAATAAGGTAATAGGC
66 CCTAAGCAATAGGGTAACAAGCCGAACTTACAGACCTTAAACCCCTAAGCAATAAGGTAACAGGC
* *
72639550 TGAATTTACAGATCTTAACCCCATAAACAGTAGGGAAACAGATCGAAGGTGATGAGCTTTAACCC
1 TGAATTTACAGATCTTAACCCCCTAAATAGTAGGGAAACAGATCGAAGGTGATGAGCTTTAACCC
* * *
72639615 CCTAAGCAATAGTGTAACAAGCCGAACTTACAGACCTTAAACCCCTAAGCAGTAGGGTAACAGGC
66 CCTAAGCAATAGGGTAACAAGCCGAACTTACAGACCTTAAACCCCTAAGCAATAAGGTAACAGGC
* * *
72639680 TGAAGATTTCCAAATCTTAACCCCCTAAGTAGTAGGGAAACAGATC
1 TG-A-ATTTACAGATCTTAACCCCCTAAATAGTAGGGAAACAGATC
72639726 AAAGACGAAA
Statistics
Matches: 159, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
130 122 0.77
131 1 0.01
132 36 0.23
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (130 bp):
TGAATTTACAGATCTTAACCCCCTAAATAGTAGGGAAACAGATCGAAGGTGATGAGCTTTAACCC
CCTAAGCAATAGGGTAACAAGCCGAACTTACAGACCTTAAACCCCTAAGCAATAAGGTAACAGGC
Found at i:72641589 original size:10 final size:10
Alignment explanation
Indices: 72641576--72641604 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
72641566 ACGTATACAT
72641576 TTATATATTA
1 TTATATATTA
72641586 TTATATATTA
1 TTATATATTA
72641596 TTAT-TATTA
1 TTATATATTA
72641605 GTTTTTGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 5 0.26
10 14 0.74
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATATATTA
Found at i:72641849 original size:11 final size:11
Alignment explanation
Indices: 72641828--72641852 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
72641818 TTTTGTTTCG
72641828 TATATTATGTA
1 TATATTATGTA
72641839 TATATTATGTA
1 TATATTATGTA
72641850 TAT
1 TAT
72641853 GCTTTTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (11 bp):
TATATTATGTA
Found at i:72641892 original size:24 final size:25
Alignment explanation
Indices: 72641837--72641892 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 25
72641827 GTATATTATG
* *
72641837 TATATATTATGTATATGCTTTTAAA
1 TATATATTATATATATGATTTTAAA
* *
72641862 TAT-TATTATATATCT-ATTTTCAA
1 TATATATTATATATATGATTTTAAA
72641885 TATATATT
1 TATATATT
72641893 CATGTAATGT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 9 0.35
24 14 0.54
25 3 0.12
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.55
Consensus pattern (25 bp):
TATATATTATATATATGATTTTAAA
Found at i:72644880 original size:27 final size:27
Alignment explanation
Indices: 72644849--72644936 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
72644839 CTGCCAGAAT
* *
72644849 AGATAATGTGACAGAGTCACCAGATAC
1 AGATAATGTGGCAGAGCCACCAGATAC
*
72644876 AGATAATCGTGGCAAAGCCACCAGA-AC
1 AGATAAT-GTGGCAGAGCCACCAGATAC
*
72644903 AGATATATGTGGTAGAGCCACCAGAT-C
1 AGATA-ATGTGGCAGAGCCACCAGATAC
72644930 AGATAAT
1 AGATAAT
72644937 TCTGACATAG
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
26 2 0.04
27 35 0.66
28 16 0.30
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.18
Consensus pattern (27 bp):
AGATAATGTGGCAGAGCCACCAGATAC
Found at i:72644948 original size:27 final size:26
Alignment explanation
Indices: 72644849--72644952 Score: 91
Period size: 27 Copynumber: 3.8 Consensus size: 26
72644839 CTGCCAGAAT
* *
72644849 AGATAATGTGACAGAGTCACCAGATAC
1 AGATAATCTGACAGAGCCACCAGAT-C
* * *
72644876 AGATAATCGTGGCAAAGCCACCAGAAC
1 AGATAATC-TGACAGAGCCACCAGATC
* **
72644903 AGATATATGTGGTAGAGCCACCAGATC
1 AGATA-ATCTGACAGAGCCACCAGATC
*
72644930 AGATAATTCTGACATAGCCACCA
1 AGATAA-TCTGACAGAGCCACCA
72644953 AGACGCTTCC
Statistics
Matches: 61, Mismatches: 13, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
26 1 0.02
27 45 0.74
28 15 0.25
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.18
Consensus pattern (26 bp):
AGATAATCTGACAGAGCCACCAGATC
Found at i:72644949 original size:54 final size:54
Alignment explanation
Indices: 72644842--72644952 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 54
72644832 AACATGGCTG
* * *
72644842 CCAGAATAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAAAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGACAAAGCCA
** *
72644896 CCAGAACAGATATATGTGGTAGAGCCACCAGAT-CAGATAATTC-TGACATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAA-TCGTGACAAAGCCA
72644950 CCA
1 CCA
72644953 AGACGCTTCC
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
54 30 0.61
55 19 0.39
ACGTcount: A:0.39, C:0.23, G:0.21, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGACAAAGCCA
Found at i:72646216 original size:17 final size:17
Alignment explanation
Indices: 72646190--72646229 Score: 73
Period size: 16 Copynumber: 2.4 Consensus size: 17
72646180 GTTGATGAAG
72646190 AGAGAAAAAAAAAAGAA
1 AGAGAAAAAAAAAAGAA
72646207 A-AGAAAAAAAAAAGAA
1 AGAGAAAAAAAAAAGAA
72646223 AGAGAAA
1 AGAGAAA
72646230 GAATGGTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 16 0.73
17 6 0.27
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (17 bp):
AGAGAAAAAAAAAAGAA
Found at i:72653964 original size:28 final size:27
Alignment explanation
Indices: 72653899--72653984 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
72653889 AGGAAGTGTC
* *
72653899 CTGGTGGCTATGCCACAATTATTTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
72653926 CTGGTGGCTCTGCCA-AGATTATCTGTAT
1 CTGGTGGCTCTGCCACA-ATTATCTG-AT
* ** *
72653954 CTGGTGACTCTATCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
72653980 CTGGT
1 CTGGT
72653985 AGCCATGCTG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
26 7 0.14
27 29 0.58
28 14 0.28
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:72656342 original size:8 final size:8
Alignment explanation
Indices: 72656329--72656358 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
72656319 CTAGATCGGC
72656329 AAAAGCCG
1 AAAAGCCG
72656337 AAAAGCCG
1 AAAAGCCG
*
72656345 AAATGCCG
1 AAAAGCCG
72656353 AAAAGC
1 AAAAGC
72656359 TGGTATCTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.23, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:72656814 original size:27 final size:26
Alignment explanation
Indices: 72656775--72656885 Score: 96
Period size: 27 Copynumber: 4.1 Consensus size: 26
72656765 GGAAGCGTCG
*
72656775 TGGTGGCTATGCCACAATTATCTGATC
1 TGGTGGCTCTGCCAC-ATTATCTGATC
*
72656802 TGGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGCTCTGCCACAT-TATCTGATC
* * * * *
72656829 TTGTGGCTTTACCAATATTATTTGTATC
1 TGGTGGCTCTGCC-ACATTATCTG-ATC
* * *
72656857 TGGTGACTCTGTCACATTATCTGTTC
1 TGGTGGCTCTGCCACATTATCTGATC
72656883 TGG
1 TGG
72656886 CATCCATGCT
Statistics
Matches: 65, Mismatches: 16, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
26 7 0.11
27 45 0.69
28 13 0.20
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.41
Consensus pattern (26 bp):
TGGTGGCTCTGCCACATTATCTGATC
Found at i:72658806 original size:27 final size:26
Alignment explanation
Indices: 72658771--72658882 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
72658761 AGCATGGCTG
*
72658771 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGACAGAGCCA
*
72658797 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGACAGAGCCA
*
72658825 CTAGAACAGATATATGTGACAGAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
* * * *
72658852 CCAGATCAGAAAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGACAGAGCCA
72658879 CCAG
1 CCAG
72658883 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 6 0.08
27 51 0.70
28 16 0.22
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:72658872 original size:54 final size:54
Alignment explanation
Indices: 72658773--72658879 Score: 162
Period size: 54 Copynumber: 2.0 Consensus size: 54
72658763 CATGGCTGCC
* *
72658773 AGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCACT
1 AGAACAGATAATGTGACAGAGCCACCAGATACAGAAAATCGTGGCAGAGCCACT
* *
72658827 AGAACAGATATATGTGACAGAGCCACCAGAT-CAGAAAATTGTGGCATAGCCAC
1 AGAACAGATA-ATGTGACAGAGCCACCAGATACAGAAAATCGTGGCAGAGCCAC
72658880 CAGGACGCTT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
54 29 0.60
55 19 0.40
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.17
Consensus pattern (54 bp):
AGAACAGATAATGTGACAGAGCCACCAGATACAGAAAATCGTGGCAGAGCCACT
Found at i:72675999 original size:14 final size:14
Alignment explanation
Indices: 72675980--72676008 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
72675970 AATTGAAGGG
72675980 ATGTTTTCTAAACT
1 ATGTTTTCTAAACT
72675994 ATGTTTTCTAAACT
1 ATGTTTTCTAAACT
72676008 A
1 A
72676009 CACTTAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.14, G:0.07, T:0.48
Consensus pattern (14 bp):
ATGTTTTCTAAACT
Found at i:72682349 original size:27 final size:27
Alignment explanation
Indices: 72682242--72682342 Score: 152
Period size: 27 Copynumber: 3.8 Consensus size: 27
72682232 AGCATGGCTG
* *
72682242 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
72682268 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
72682295 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
*
72682322 CCAGATCAGATAATTGTGGCA
1 CCAGAACAGATAATTGTGGCA
72682343 TAACCACTAA
Statistics
Matches: 69, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
26 15 0.22
27 52 0.75
28 2 0.03
ACGTcount: A:0.38, C:0.21, G:0.25, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:72691382 original size:29 final size:28
Alignment explanation
Indices: 72691349--72691459 Score: 127
Period size: 29 Copynumber: 3.9 Consensus size: 28
72691339 ACTGTGAATG
72691349 TGATTTGGGCCTCATGGGCCATATAAATC
1 TGATTTGGGCCT-ATGGGCCATATAAATC
* *
72691378 TGATTTGGGCCTGATGGGCCATATATATG
1 TGATTTGGGCCT-ATGGGCCATATAAATC
*
72691407 TGAATTGGGCCTAATGGGCCATATAAA-C
1 TGATTTGGGCCT-ATGGGCCATATAAATC
*
72691435 GTGA-TTGGGTCTAGTGGGCCATATA
1 -TGATTTGGGCCTA-TGGGCCATATA
72691460 CAGGTATGTT
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
27 1 0.01
28 18 0.25
29 53 0.74
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (28 bp):
TGATTTGGGCCTATGGGCCATATAAATC
Found at i:72691440 original size:58 final size:57
Alignment explanation
Indices: 72691346--72691459 Score: 160
Period size: 58 Copynumber: 2.0 Consensus size: 57
72691336 ATGACTGTGA
* *
72691346 ATGTGATTTGGGCCTCATGGGCCATATAAATCTGATTTGGGCCT-GATGGGCCATATAT
1 ATGTGAATTGGGCCTAATGGGCCATATAAATCTGA-TTGGGCCTAG-TGGGCCATATAT
*
72691404 ATGTGAATTGGGCCTAATGGGCCATATAAA-CGTGATTGGGTCTAGTGGGCCATATA
1 ATGTGAATTGGGCCTAATGGGCCATATAAATC-TGATTGGGCCTAGTGGGCCATATA
72691460 CAGGTATGTT
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
57 19 0.37
58 32 0.63
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.31
Consensus pattern (57 bp):
ATGTGAATTGGGCCTAATGGGCCATATAAATCTGATTGGGCCTAGTGGGCCATATAT
Found at i:72716069 original size:41 final size:41
Alignment explanation
Indices: 72716024--72716185 Score: 156
Period size: 41 Copynumber: 3.9 Consensus size: 41
72716014 TCTTAGCATC
72716024 GGCTCAAAAGCCCTTCGAGACCAAGCTCGG-ATTAGACCACT
1 GGCTCAAAAGCCCTTCGAGACCAAGCTCGGTATTAGA-CACT
* * * *
72716065 GGCTCGAATGCCCTTCG-GAACTAAG-TCCGGTTTTA-ACACT
1 GGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGTATTAGACACT
* * *
72716105 GGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG-CACT
1 GGCTC--AAAAGCCCTTCGAGACCAAGCTCGG-TATTAGACACT
72716148 GGCTCAAAAGCCCTTCGAGACCAAGCTCGG-ATTTAGAC
1 GGCTCAAAAGCCCTTCGAGACCAAGCTCGGTA-TTAGAC
72716186 CCCGATTAGC
Statistics
Matches: 99, Mismatches: 11, Indels: 22
0.75 0.08 0.17
Matches are distributed among these distances:
39 1 0.01
40 15 0.15
41 47 0.47
42 22 0.22
43 14 0.14
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GGCTCAAAAGCCCTTCGAGACCAAGCTCGGTATTAGACACT
Found at i:72717626 original size:14 final size:14
Alignment explanation
Indices: 72717605--72717646 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
72717595 TTCATTTTGC
72717605 AACATAAAATTATT
1 AACATAAAATTATT
*
72717619 AGCATAAAA-TATT
1 AACATAAAATTATT
* *
72717632 AACACAAAATAATT
1 AACATAAAATTATT
72717646 A
1 A
72717647 TAATATGCTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.60, C:0.10, G:0.02, T:0.29
Consensus pattern (14 bp):
AACATAAAATTATT
Found at i:72719154 original size:36 final size:36
Alignment explanation
Indices: 72719107--72719178 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
72719097 TTCTTTCTAC
*
72719107 CGTTCCAAATTCCCACCCCCTCCGCCAATTTTTCCT
1 CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
72719143 CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
1 CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
72719179 TTCTTCTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.17, C:0.49, G:0.04, T:0.31
Consensus pattern (36 bp):
CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
Found at i:72719307 original size:21 final size:21
Alignment explanation
Indices: 72719295--72719335 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
72719285 CACGACCACA
*
72719295 GTTCCACAAGCCACAAACAAG
1 GTTCCACAAGCCACAACCAAG
72719316 GTTCCACAAGCCACAACCAA
1 GTTCCACAAGCCACAACCAA
72719336 CGTCAGTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.41, C:0.37, G:0.12, T:0.10
Consensus pattern (21 bp):
GTTCCACAAGCCACAACCAAG
Found at i:72719649 original size:16 final size:16
Alignment explanation
Indices: 72719630--72719661 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
72719620 TACTAATCAA
*
72719630 AGTTTCTATGTTTCTG
1 AGTTTCCATGTTTCTG
72719646 AGTTTCCATGTTTCTG
1 AGTTTCCATGTTTCTG
72719662 CCTGTCTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.16, G:0.19, T:0.53
Consensus pattern (16 bp):
AGTTTCCATGTTTCTG
Found at i:72719809 original size:45 final size:45
Alignment explanation
Indices: 72719739--72719826 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
72719729 AATTAAATTA
** *
72719739 ACCATTATTAGCAGGTTTAGTTTCATTTAAGTCATGCATATATAT
1 ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATAT
72719784 ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATAT
1 ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATAT
72719827 GTATATTAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (45 bp):
ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATAT
Found at i:72719876 original size:36 final size:36
Alignment explanation
Indices: 72719829--72719901 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
72719819 GCATATATGT
* *
72719829 ATATTAATGCATATGTATACTGTTTAGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
* *
72719865 ATATTAATGCATATATATAATGTTTTGCTTCGTTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
72719901 A
1 A
72719902 GTCATGCACA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.32, C:0.10, G:0.11, T:0.48
Consensus pattern (36 bp):
ATATTAATGCATATATATAATGTTTAGCTTCATTTA
Found at i:72719917 original size:43 final size:41
Alignment explanation
Indices: 72719869--72719968 Score: 110
Period size: 43 Copynumber: 2.4 Consensus size: 41
72719859 CATTTAATAT
** ** *
72719869 TAATGCATATATATAATGTTTTGCTTCGTTTAAGTCATGCACA
1 TAATGCATATATATAACATTTAACTTCATTTAAGTCATG--CA
**
72719912 TAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCA
1 TAATGCATATATATAACATTTAACTTCATTTAAGTCATGCA
72719953 TAATTGCATATATATA
1 TAA-TGCATATATATA
72719969 CCATAATTTG
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
41 5 0.10
42 11 0.23
43 32 0.67
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.42
Consensus pattern (41 bp):
TAATGCATATATATAACATTTAACTTCATTTAAGTCATGCA
Found at i:72720059 original size:36 final size:36
Alignment explanation
Indices: 72720011--72720083 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
72720001 AAGCATATAT
* * *
72720011 ATATTAATGCATATGTATACTGTTTAGCTTCATTTA
1 ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
*
72720047 ATATTAAGGCATATATATAATGTTTTGCTTCATTTA
1 ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
72720083 A
1 A
72720084 GTCATGCGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.33, C:0.10, G:0.11, T:0.47
Consensus pattern (36 bp):
ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
Found at i:72720241 original size:36 final size:36
Alignment explanation
Indices: 72720193--72720265 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
72720183 AAGCATATAT
* * *
72720193 ATATTAATGCATATGTATACTGTTTAGCTTCATTTA
1 ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
*
72720229 ATATTAAGGCATATATATAATGTTTTGCTTCATTTA
1 ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
72720265 A
1 A
72720266 GTCATGCGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.33, C:0.10, G:0.11, T:0.47
Consensus pattern (36 bp):
ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
Found at i:72720423 original size:36 final size:36
Alignment explanation
Indices: 72720375--72720447 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
72720365 AAGCATATAT
* * *
72720375 ATATTAATGCATATGTATACTGTTTAGCTTCATTTA
1 ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
*
72720411 ATATTAAGGCATATATATAATGTTTTGCTTCATTTA
1 ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
72720447 A
1 A
72720448 GTCATGCGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.33, C:0.10, G:0.11, T:0.47
Consensus pattern (36 bp):
ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
Found at i:72720608 original size:36 final size:36
Alignment explanation
Indices: 72720561--72720633 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
72720551 ATATATATAT
* *
72720561 ATATTAATGCATATGTATACTGTTTAGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
*
72720597 ATATTAATGCATATATATAATGTTTTGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
72720633 A
1 A
72720634 GTCATGTGAC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.48
Consensus pattern (36 bp):
ATATTAATGCATATATATAATGTTTAGCTTCATTTA
Found at i:72720711 original size:186 final size:182
Alignment explanation
Indices: 72719773--72720639 Score: 1572
Period size: 182 Copynumber: 4.7 Consensus size: 182
72719763 ATTTAAGTCA
* * * * * *
72719773 TGCATATATATACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATGTATATTAATG
1 TGCATATATATATCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCATATA--TATATTAATG
* *
72719838 CATATGTATACTGTTTAGCTTCATTTAATATTAATGCATATATATAATGTTTTGCTTCGTTTAAG
64 CATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGTTTTGCTTCATTTAAG
*
72719903 TCATGCACATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCATAAT
129 TCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCATAAT
* *
72719957 TGCATATATATACCATAATTTGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATTAATGCA
1 TGCATATATATATCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATTAATGCA
72720022 TATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGTTTTGCTTCATTTAAGTC
66 TATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGTTTTGCTTCATTTAAGTC
72720087 ATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCATAAT
131 ATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCATAAT
72720139 TGCATATATATATCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATTAATGCA
1 TGCATATATATATCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATTAATGCA
72720204 TATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGTTTTGCTTCATTTAAGTC
66 TATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGTTTTGCTTCATTTAAGTC
72720269 ATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCATAAT
131 ATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCATAAT
72720321 TGCATATATATATCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATTAATGCA
1 TGCATATATATATCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATTAATGCA
72720386 TATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGTTTTGCTTCATTTAAGTC
66 TATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGTTTTGCTTCATTTAAGTC
72720451 ATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCATAAT
131 ATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCATAAT
72720503 TGCATATATATATCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATATATTAA
1 TGCATATATATATCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGC----ATATATATATTAA
*
72720568 TGCATATGTATACTGTTTAGCTTCATTTAATATTAATGCATATATATAATGTTTTGCTTCATTTA
62 TGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGTTTTGCTTCATTTA
72720633 AGTCATG
127 AGTCATG
72720640 TGACAGCTCA
Statistics
Matches: 667, Mismatches: 12, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
182 536 0.80
184 47 0.07
186 84 0.13
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.41
Consensus pattern (182 bp):
TGCATATATATATCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATTAATGCA
TATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGTTTTGCTTCATTTAAGTC
ATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCATAAT
Found at i:72722592 original size:27 final size:28
Alignment explanation
Indices: 72722508--72722604 Score: 144
Period size: 28 Copynumber: 3.5 Consensus size: 28
72722498 TAAATTGTAC
*
72722508 AGCACTAAGTGTG-AGAGTTTGATTATGT
1 AGCACTAAGTGTGCA-AGTTTGATTATAT
*
72722536 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCAAGTTTGATTATAT
72722564 AGCACTAAGTGTGCAAG-TTGATTATAT
1 AGCACTAAGTGTGCAAGTTTGATTATAT
*
72722591 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
72722605 GGACTTAATA
Statistics
Matches: 64, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
27 23 0.36
28 41 0.64
ACGTcount: A:0.29, C:0.11, G:0.27, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCAAGTTTGATTATAT
Found at i:72722616 original size:27 final size:27
Alignment explanation
Indices: 72722508--72722618 Score: 82
Period size: 28 Copynumber: 4.0 Consensus size: 27
72722498 TAAATTGTAC
* * *
72722508 AGCACTAAGTGTG-AGAGTTTGATTATGT
1 AGCACTAAGTGTGCA-A-CTTGAATATAT
** *
72722536 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
* *
72722564 AGCACTAAGTGTGCAAGTTGATTATAT
1 AGCACTAAGTGTGCAACTTGAATATAT
* *
72722591 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
72722618 A
1 A
72722619 CTTTTGAATC
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
27 31 0.43
28 40 0.56
30 1 0.01
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCAACTTGAATATAT
Found at i:72726465 original size:29 final size:29
Alignment explanation
Indices: 72726426--72726504 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
72726416 CTTAATAATC
*
72726426 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
72726456 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
72726485 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
72726505 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:72727795 original size:54 final size:55
Alignment explanation
Indices: 72727731--72727844 Score: 212
Period size: 55 Copynumber: 2.1 Consensus size: 55
72727721 TTCATAGTTT
*
72727731 CCATGATTCAACTAGCCCTTTTAGCAT-AATAGCACAAATTATGATAGTGATTAA
1 CCATTATTCAACTAGCCCTTTTAGCATAAATAGCACAAATTATGATAGTGATTAA
72727785 CCATTATTCAACTAGCCCTTTTAGCATAAATAGCACAAATTATGATAGTGATTAA
1 CCATTATTCAACTAGCCCTTTTAGCATAAATAGCACAAATTATGATAGTGATTAA
72727840 CCATT
1 CCATT
72727845 CCCATGGCCA
Statistics
Matches: 58, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
54 26 0.45
55 32 0.55
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.32
Consensus pattern (55 bp):
CCATTATTCAACTAGCCCTTTTAGCATAAATAGCACAAATTATGATAGTGATTAA
Found at i:72728620 original size:37 final size:37
Alignment explanation
Indices: 72728559--72728637 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
72728549 TTATTACGAA
* *
72728559 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGAACATAATCTCCACACGAAGTCATCGG
* *
72728596 GTCTTACCCGAACA-AATTTCCCACACGTAGTCATCGG
1 GTCTTACCCGAACATAATCT-CCACACGAAGTCATCGG
72728633 GTCTT
1 GTCTT
72728638 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 4 0.11
37 33 0.89
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGAACATAATCTCCACACGAAGTCATCGG
Found at i:72728834 original size:47 final size:47
Alignment explanation
Indices: 72728756--72728947 Score: 276
Period size: 47 Copynumber: 4.1 Consensus size: 47
72728746 CCCTTCGGGA
* * * * * * *
72728756 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72728803 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
72728850 CTTATTACATATATACACTTTCACATTCATTACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72728897 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72728944 CTTA
1 CTTA
72728948 CTATCATTTC
Statistics
Matches: 128, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 128 1.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72732209 original size:25 final size:26
Alignment explanation
Indices: 72732181--72732233 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
72732171 AGGTCGTAAG
72732181 TCTTGGAAATTCGA-TTTTTATGCCA
1 TCTTGGAAATTCGATTTTTTATGCCA
*
72732206 TCTTGGTAATTCGATTTTTTTATGCCA
1 TCTTGGAAATTCGA-TTTTTTATGCCA
72732233 T
1 T
72732234 ATGTCATGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 13 0.52
27 12 0.48
ACGTcount: A:0.21, C:0.15, G:0.15, T:0.49
Consensus pattern (26 bp):
TCTTGGAAATTCGATTTTTTATGCCA
Found at i:72732421 original size:96 final size:96
Alignment explanation
Indices: 72732251--72732439 Score: 324
Period size: 96 Copynumber: 2.0 Consensus size: 96
72732241 GGCTGATTAA
* * *
72732251 TTTTGGTGTTAAGATTCATGATATGGCAATAGTGTAGTAGGGAGATGTTTGACAATGATTAGCCT
1 TTTTGGTGTCAAAATTCATGATATGGCAATAGTGTAGTAGGGAGATGTTTGACAATGATTAGCCC
* *
72732316 TTGGTATGGCTAGTCATGATTATAATTTTAT
66 TTGGCATGGCTAGTCATGATCATAATTTTAT
*
72732347 TTTTGGTGTCAAAATTCATGATATGGCAATAGTGTAGTAGGGAGATGTTTGACAATGATTATCCC
1 TTTTGGTGTCAAAATTCATGATATGGCAATAGTGTAGTAGGGAGATGTTTGACAATGATTAGCCC
72732412 TTGGCATGGCTAGTCATGATCATAATTT
66 TTGGCATGGCTAGTCATGATCATAATTT
72732440 GTGATATGTA
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
96 87 1.00
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.39
Consensus pattern (96 bp):
TTTTGGTGTCAAAATTCATGATATGGCAATAGTGTAGTAGGGAGATGTTTGACAATGATTAGCCC
TTGGCATGGCTAGTCATGATCATAATTTTAT
Found at i:72741652 original size:5 final size:5
Alignment explanation
Indices: 72741642--72742456 Score: 1605
Period size: 5 Copynumber: 162.8 Consensus size: 5
72741632 AAGTCATGCA
72741642 TATAT TATAT TATAT TATAT TATAT TATA- TATTAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TA-TAT TATAT TATAT TATAT
72741692 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
72741742 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
72741792 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
72741842 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
72741892 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
72741942 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
72741992 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
72742042 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
72742092 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
72742142 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
72742192 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
72742242 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
72742292 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
72742342 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
72742392 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
72742442 TATAT ATATAT TATA
1 TATAT -TATAT TATA
72742457 AAAGCCAATT
Statistics
Matches: 807, Mismatches: 0, Indels: 6
0.99 0.00 0.01
Matches are distributed among these distances:
4 2 0.00
5 798 0.99
6 7 0.01
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:72745876 original size:21 final size:21
Alignment explanation
Indices: 72745850--72745890 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
72745840 TTTTGCATAA
72745850 CTAAAATAGTTCTTTACATGC
1 CTAAAATAGTTCTTTACATGC
72745871 CTAAAATAGTTCTTTACATG
1 CTAAAATAGTTCTTTACATG
72745891 TAATTATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.17, G:0.10, T:0.39
Consensus pattern (21 bp):
CTAAAATAGTTCTTTACATGC
Found at i:72745918 original size:21 final size:22
Alignment explanation
Indices: 72745894--72745936 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
72745884 TTACATGTAA
* *
72745894 TTATTTAG-TAAATTATATTGT
1 TTATGTAGTTAAATAATATTGT
72745915 TTATGTAGTTAAATAATATTGT
1 TTATGTAGTTAAATAATATTGT
72745937 AATTCGTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (22 bp):
TTATGTAGTTAAATAATATTGT
Found at i:72746770 original size:27 final size:27
Alignment explanation
Indices: 72746752--72746937 Score: 239
Period size: 27 Copynumber: 6.9 Consensus size: 27
72746742 CTTGATTTGT
*
72746752 AGAATTACCATTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
* *
72746779 AGAATTACCGTTTCACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * * *
72746806 AAAATTACCGTTTTACCCTCAATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
*
72746833 AGAATTACCGTTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
72746860 AGAATTACTATTTTACCCTTGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
72746887 AAAATTACCATTTTACCCTC-AGTTTAC
1 AGAATTACCATTTTACCCTCGA-TTTAC
* *
72746914 AAAATTACCATTTTACCTTCGATT
1 AGAATTACCATTTTACCCTCGATT
72746938 GTGAAATTAC
Statistics
Matches: 140, Mismatches: 17, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 138 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:72746855 original size:81 final size:81
Alignment explanation
Indices: 72746746--72746937 Score: 276
Period size: 81 Copynumber: 2.4 Consensus size: 81
72746736 AATGCCCTTG
* * *
72746746 ATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTACAAAAT
1 ATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTCACCCTCGATTTACAAAAT
*
72746811 TACCGTTTTACCCTCA
66 TACCATTTTACCCTCA
* * * *
72746827 ATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTTGATTTACAAAAT
1 ATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTCACCCTCGATTTACAAAAT
72746892 TACCATTTTACCCTCA
66 TACCATTTTACCCTCA
* * * *
72746908 GTTTACAAAATTACCATTTTACCTTCGATT
1 ATTTATAGAATTACCATTTTACCCTCGATT
72746938 GTGAAATTAC
Statistics
Matches: 98, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 98 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (81 bp):
ATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTCACCCTCGATTTACAAAAT
TACCATTTTACCCTCA
Found at i:72746973 original size:27 final size:27
Alignment explanation
Indices: 72746966--72747090 Score: 180
Period size: 27 Copynumber: 4.6 Consensus size: 27
72746956 CCCTGTAGGA
72746966 TAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTG
72746993 TAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTG
* *
72747020 TAAAATTACCGAAATACCACTAGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTG
* * * *
72747047 TGAAATTATCGAAATA-CCCTCAATTTG
1 TAAAATTACCAAAATACCCCT-AGTTTG
72747074 TAAAATTACCAAAATAC
1 TAAAATTACCAAAATAC
72747091 TCTTGATGTA
Statistics
Matches: 87, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
26 3 0.03
27 84 0.97
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTAGTTTG
Found at i:72747010 original size:54 final size:54
Alignment explanation
Indices: 72746936--72747090 Score: 179
Period size: 54 Copynumber: 2.9 Consensus size: 54
72746926 TTACCTTCGA
* *
72746936 TTGTGAAATTACTGAAATACCCCT-GTAGGATAAAATTACCAAAATACCCCTAGT
1 TTGTGAAATTACCGAAATACCCCTAGTAGG-TAAAATTACCAAAATACCACTAGT
* * ** *
72746990 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCACTAGT
1 TTGTGAAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGT
* * **
72747044 TTGTGAAATTATCGAAATA-CCCTCAATTTGTAAAATTACCAAAATAC
1 TTGTGAAATTACCGAAATACCCCT-AGTAGGTAAAATTACCAAAATAC
72747091 TCTTGATGTA
Statistics
Matches: 87, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
53 4 0.05
54 80 0.92
55 3 0.03
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30
Consensus pattern (54 bp):
TTGTGAAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGT
Found at i:72747170 original size:27 final size:27
Alignment explanation
Indices: 72747099--72747182 Score: 82
Period size: 27 Copynumber: 3.0 Consensus size: 27
72747089 ACTCTTGATG
* * *
72747099 TACAAAATTACAGAAATACCCTTGACTT
1 TACAAAATTACTGAAATACCATT-AGTT
72747127 T-CTAAAAATTA-TAGAAATACCATTAGTT
1 TAC--AAAATTACT-GAAATACCATTAGTT
*
72747155 TACAAAATTACTGAAATACCATTGGTT
1 TACAAAATTACTGAAATACCATTAGTT
72747182 T
1 T
72747183 GTAGATTTAC
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
27 23 0.49
28 6 0.13
29 18 0.38
ACGTcount: A:0.43, C:0.15, G:0.08, T:0.33
Consensus pattern (27 bp):
TACAAAATTACTGAAATACCATTAGTT
Found at i:72747274 original size:27 final size:27
Alignment explanation
Indices: 72747199--72747300 Score: 73
Period size: 27 Copynumber: 3.8 Consensus size: 27
72747189 TTACCAAAAC
* * * * *
72747199 ACCCTTGTAGGATGAAATGACTAAAAT
1 ACCCCTGTAGGGTAAAATGACCATAAT
* *
72747226 ACCCCTAATA-GGTAAAAAGACCATAA-
1 ACCCCT-GTAGGGTAAAATGACCATAAT
* *
72747252 AGCCCCTGTAGGGTAAAGTGACCGTAAT
1 A-CCCCTGTAGGGTAAAATGACCATAAT
* *
72747280 ACCCTTGTATGGTAAAATGAC
1 ACCCCTGTAGGGTAAAATGAC
72747301 GAATATGCCC
Statistics
Matches: 57, Mismatches: 14, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
26 3 0.05
27 51 0.89
28 3 0.05
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.23
Consensus pattern (27 bp):
ACCCCTGTAGGGTAAAATGACCATAAT
Found at i:72748148 original size:25 final size:25
Alignment explanation
Indices: 72748110--72748199 Score: 135
Period size: 25 Copynumber: 3.6 Consensus size: 25
72748100 AGGAAGTGCT
* *
72748110 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCTAGTTTATCG
* *
72748135 AAAAGGGCTTTGCCCCAATTTATCG
1 AAAAGGGCTTTGCCCTAGTTTATCG
*
72748160 AAAAGGGCTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCCTAGTTTATCG
72748185 AAAAGGGCTTTGCCC
1 AAAAGGGCTTTGCCC
72748200 CAATTATTAA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 58 1.00
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCTAGTTTATCG
Found at i:72748189 original size:50 final size:50
Alignment explanation
Indices: 72748110--72748204 Score: 163
Period size: 50 Copynumber: 1.9 Consensus size: 50
72748100 AGGAAGTGCT
*
72748110 AAAAGGGCTATGCCCTAGTTTACCGAAAAGGGCTTTGCCCCAATTTATCG
1 AAAAGGGCTATGCCCTAGTTTACCAAAAAGGGCTTTGCCCCAATTTATCG
* *
72748160 AAAAGGGCTTTGCCCTAGTTTATCAAAAAGGGCTTTGCCCCAATT
1 AAAAGGGCTATGCCCTAGTTTACCAAAAAGGGCTTTGCCCCAATT
72748205 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.27
Consensus pattern (50 bp):
AAAAGGGCTATGCCCTAGTTTACCAAAAAGGGCTTTGCCCCAATTTATCG
Found at i:72748411 original size:42 final size:42
Alignment explanation
Indices: 72748352--72748443 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
72748342 TAGTCTCCCC
*
72748352 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
*
72748394 AAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
72748436 AAATGGGC
1 AAATGGGC
72748444 CTATGGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.39
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
Found at i:72748544 original size:31 final size:31
Alignment explanation
Indices: 72748467--72748574 Score: 132
Period size: 31 Copynumber: 3.5 Consensus size: 31
72748457 CGTTTATAAT
* * *
72748467 AAAGGCTTTGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATTTGATTTATGA
72748498 AAAGGCTTCGGCCCAGTGATTTGATTTATGA
1 AAAGGCTTCGGCCCAGTGATTTGATTTATGA
* * *
72748529 AAAGGCTTCGGCCCAGT-AATTG-TTAAACG-
1 AAAGGCTTCGGCCCAGTGATTTGATT-TATGA
72748558 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
72748575 ATATGTCGAG
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
29 19 0.27
30 6 0.09
31 45 0.64
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATTTGATTTATGA
Found at i:72757901 original size:19 final size:19
Alignment explanation
Indices: 72757877--72757914 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
72757867 ATAACATACG
72757877 TTAACTTATTATTATTTTA
1 TTAACTTATTATTATTTTA
72757896 TTAACTTATTATTATTTTA
1 TTAACTTATTATTATTTTA
72757915 CCTTTTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (19 bp):
TTAACTTATTATTATTTTA
Found at i:72760867 original size:73 final size:73
Alignment explanation
Indices: 72760747--72760894 Score: 269
Period size: 73 Copynumber: 2.0 Consensus size: 73
72760737 CCAGAGCAAT
* *
72760747 TTCTGGATCCCCTGTTCTGACTTTTGAAATTCACCATAAATTGTTCAAAGATAATTAGAAGTCAT
1 TTCTGGATCCCCTATTCTGAATTTTGAAATTCACCATAAATTGTTCAAAGATAATTAGAAGTCAT
72760812 AATTTATA
66 AATTTATA
*
72760820 TTCTGGATCCCCTATTCTGAATTTTGAAATTCACCATAAATTTTTCAAAGATAATTAGAAGTCAT
1 TTCTGGATCCCCTATTCTGAATTTTGAAATTCACCATAAATTGTTCAAAGATAATTAGAAGTCAT
72760885 AATTTATA
66 AATTTATA
72760893 TT
1 TT
72760895 TACAGATTTA
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 72 1.00
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.40
Consensus pattern (73 bp):
TTCTGGATCCCCTATTCTGAATTTTGAAATTCACCATAAATTGTTCAAAGATAATTAGAAGTCAT
AATTTATA
Found at i:72762952 original size:15 final size:15
Alignment explanation
Indices: 72762913--72762953 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
72762903 GTATCTTGGG
*
72762913 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
72762928 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
72762943 TTTCTTTATTC
1 TTTCTTTATTC
72762954 GATTTTCTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.12, C:0.20, G:0.10, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:72770620 original size:42 final size:43
Alignment explanation
Indices: 72770516--72770625 Score: 125
Period size: 44 Copynumber: 2.6 Consensus size: 43
72770506 ATATGTGTTA
* * ***
72770516 TCGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGAGATT
1 TCGTGTAAGACCATGTCTGGGACATCAACATCGATTTGAGATT
*
72770559 TACGTGTAAAACCATGTCTGGGACATCAACATCGTATTT-A-ATT
1 T-CGTGTAAGACCATGTCTGGGACATCAACATCG-ATTTGAGATT
*
72770602 TCGTGTAAGACCTTGTCTGGGACA
1 TCGTGTAAGACCATGTCTGGGACA
72770626 GTGGCATCAA
Statistics
Matches: 57, Mismatches: 8, Indels: 5
0.81 0.11 0.07
Matches are distributed among these distances:
42 21 0.37
43 5 0.09
44 27 0.47
45 4 0.07
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (43 bp):
TCGTGTAAGACCATGTCTGGGACATCAACATCGATTTGAGATT
Found at i:72777530 original size:44 final size:44
Alignment explanation
Indices: 72777482--72777638 Score: 162
Period size: 43 Copynumber: 3.6 Consensus size: 44
72777472 AGTGTTATCG
* *
72777482 TGTAAGACCACATCTGGGACATTGGCATC-AATTTGAGATTTACG
1 TGTAAGACCACGTCTGGGACATTGGCATCGAATTT-AGATTTACA
* * * *
72777526 TGTAAGACCATGCCTGGGACATCGGCATCGTATTTA-ATTT-CA
1 TGTAAGACCACGTCTGGGACATTGGCATCGAATTTAGATTTACA
** *
72777568 TGTAAGACCTTGTCTGGGACAGTGGCATCGATATTT-GA-TTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCGA-ATTTAGATTTACA
* *
72777611 TTTAAGACCACGTCTTGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
72777639 TGTACTAGCT
Statistics
Matches: 93, Mismatches: 16, Indels: 9
0.79 0.14 0.08
Matches are distributed among these distances:
42 29 0.31
43 34 0.37
44 26 0.28
45 4 0.04
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGAATTTAGATTTACA
Found at i:72788997 original size:29 final size:28
Alignment explanation
Indices: 72788955--72789027 Score: 83
Period size: 29 Copynumber: 2.6 Consensus size: 28
72788945 TGAATGTGAC
* * *
72788955 TGGGCCTAAAGGGCCATATAAATGTGGTT
1 TGGGCCTAATGGGCCATATAAATAT-GAT
* *
72788984 TGGGCCTAATGGGCTATATGAATATGAT
1 TGGGCCTAATGGGCCATATAAATATGAT
*
72789012 TGGGCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
72789028 AATACAGACA
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
28 16 0.43
29 21 0.57
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.29
Consensus pattern (28 bp):
TGGGCCTAATGGGCCATATAAATATGAT
Found at i:72789021 original size:28 final size:28
Alignment explanation
Indices: 72788942--72789027 Score: 100
Period size: 28 Copynumber: 3.0 Consensus size: 28
72788932 GTGAGCATGA
* *
72788942 ATATGAATGTGACTGGGCCTAAAGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
* * *
72788970 ATATAAATGTGGTTTGGGCCTAATGGGCT
1 ATATGAATGT-GATTGGGCCTAATGGGCC
* *
72788999 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
72789027 A
1 A
72789028 AATACAGACA
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
28 25 0.53
29 22 0.47
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.29
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:72795869 original size:47 final size:47
Alignment explanation
Indices: 72795793--72795913 Score: 152
Period size: 47 Copynumber: 2.5 Consensus size: 47
72795783 CTTCGGGACT
* * * * *
72795793 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
* * *
72795840 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
72795887 TATCACATATATATACACTTTCACATT
1 TATCAC--ATATATACACTTTCACATT
72795914 TATTCAAATA
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
47 44 0.70
49 19 0.30
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
Found at i:72808952 original size:56 final size:56
Alignment explanation
Indices: 72808892--72809159 Score: 349
Period size: 56 Copynumber: 4.8 Consensus size: 56
72808882 CCTAGAGAGT
* * * *
72808892 GTCTTACTCGTAAACACATATTGGAGTCACATATCGATGCCAACGAATTAAACGTG
1 GTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGAATTAAACGTG
* *
72808948 GTCTTACTCACACACACATATCGGAATCACATATCGATGCCAAC-ATATTAAGCGTG
1 GTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGA-ATTAAACGTG
* * * * * *
72809004 GTCTTCCTCGCATATAAATATCGGAATCACATATCGATGCCAACGCATTAAACGTT
1 GTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGAATTAAACGTG
** * *
72809060 GTCTTACTCGCACACACATATCAAAATCACATATCGATGCCAACGTATTAAACATG
1 GTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGAATTAAACGTG
* * *
72809116 GTCTTACTCGCACACATATTTCGGAATCACATATTGATGCCAAC
1 GTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAAC
72809160 TCAAAAATGT
Statistics
Matches: 182, Mismatches: 28, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
55 1 0.01
56 181 0.99
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (56 bp):
GTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGAATTAAACGTG
Found at i:72810806 original size:22 final size:22
Alignment explanation
Indices: 72810778--72810825 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
72810768 CTTTTTATCC
*
72810778 CAGACCACCAATAATGTTGTTT
1 CAGACCACAAATAATGTTGTTT
*
72810800 CAGACCAGAAATAATGTTGTTT
1 CAGACCACAAATAATGTTGTTT
72810822 CAGA
1 CAGA
72810826 TCATTATACA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (22 bp):
CAGACCACAAATAATGTTGTTT
Found at i:72815153 original size:56 final size:56
Alignment explanation
Indices: 72815077--72815401 Score: 332
Period size: 56 Copynumber: 5.8 Consensus size: 56
72815067 TCCCAGATAG
** * *
72815077 GGTCTTACTCGTAAACACATATCAGAATCACATATCAATGCCAACGTATTAAACGT
1 GGTCTTACTCACACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGT
* * * *
72815133 GGTCTTGCTCACACATACATATCGGAATCACATATCGATGCCAATGTATTAAACGT
1 GGTCTTACTCACACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGT
* * *
72815189 GGTCTTAC-AAGCATACACATAT-TGAAATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCA-CACACACATATCAG-AATCACATATCGATGCCAACGTATTAAACGT
* * * * * ** * *
72815245 GGTCTTACTCGCAAACATATTTC-GAAATCTCATATAAATGCCAATGCATTAAACGT
1 GGTCTTACTCACACACACATATCAG-AATCACATATCGATGCCAACGTATTAAACGT
* *** *
72815301 GATCTTACTTGTACACGCATATCAGAATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCACACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGT
** * * *
72815357 GGTCTTACTCGTACACATATTTCGGAATCACATATCGATGCCAAC
1 GGTCTTACTCACACACACATATCAGAATCACATATCGATGCCAAC
72815402 TAAAAAATGT
Statistics
Matches: 222, Mismatches: 42, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
55 2 0.01
56 219 0.99
57 1 0.00
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCACACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGT
Found at i:72815247 original size:112 final size:112
Alignment explanation
Indices: 72815091--72815400 Score: 396
Period size: 112 Copynumber: 2.8 Consensus size: 112
72815081 TTACTCGTAA
* *
72815091 ACACATATCAGAATCACATATCAATGCCAACGTATTAAACGTGGTCTTGCTCACACATACATATC
1 ACACATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCACACATACATATC
* * *
72815156 GGAATCACATATCGATGCCAATGTATTAAACGTGGTCTTACAAGCAT
66 GGAATCACATATCGATGCCAATGCATTAAACGTGATCTTACAAGCAC
* *
72815203 ACACATAT-TGAAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCA-A-ACATAT
1 ACACATATCAG-AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCACACATACATA-
* * ** ** *
72815265 TTCGAAATCTCATATAAATGCCAATGCATTAAACGTGATCTTACTTGTAC
64 -TCGGAATCACATATCGATGCCAATGCATTAAACGTGATCTTACAAGCAC
* *
72815315 ACGCATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGTACACAT--ATT
1 ACACATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTC--ACACATACATA
72815378 TCGGAATCACATATCGATGCCAA
64 TCGGAATCACATATCGATGCCAA
72815401 CTAAAAAATG
Statistics
Matches: 168, Mismatches: 22, Indels: 16
0.82 0.11 0.08
Matches are distributed among these distances:
110 5 0.03
111 2 0.01
112 155 0.92
113 1 0.01
114 4 0.02
115 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (112 bp):
ACACATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCACACATACATATC
GGAATCACATATCGATGCCAATGCATTAAACGTGATCTTACAAGCAC
Found at i:72815355 original size:168 final size:168
Alignment explanation
Indices: 72815077--72815401 Score: 431
Period size: 168 Copynumber: 1.9 Consensus size: 168
72815067 TCCCAGATAG
* * * * *
72815077 GGTCTTACTCGTAAACACATATCAGAATCACATATCAATGCCAACGTATTAAACGTGGTCTTGCT
1 GGTCTTACTCGCAAACACATATCAGAATCACATATAAATGCCAACGCATTAAACGTGATCTTACT
* * *
72815142 CACACATACATATCGGAATCACATATCGATGCCAATGTATTAAACGTGGTCTTACAAGCATACAC
66 CACACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTAC--GCATACAC
72815207 ATA-TT-GAAATCACATATCGATGCCAACGTATTAAACGT
129 ATATTTCGAAATCACATATCGATGCCAACGTATTAAACGT
* * * *
72815245 GGTCTTACTCGCAAACATATTTC-GAAATCTCATATAAATGCCAATGCATTAAACGTGATCTTAC
1 GGTCTTACTCGCAAACACATATCAG-AATCACATATAAATGCCAACGCATTAAACGTGATCTTAC
*** * * *
72815309 TTGTACACGCATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGTACACA
65 TCACACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACGCATACACA
*
72815374 TATTTCGGAATCACATATCGATGCCAAC
130 TATTTCGAAATCACATATCGATGCCAAC
72815402 TAAAAAATGT
Statistics
Matches: 135, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
166 9 0.07
167 3 0.02
168 123 0.91
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.28
Consensus pattern (168 bp):
GGTCTTACTCGCAAACACATATCAGAATCACATATAAATGCCAACGCATTAAACGTGATCTTACT
CACACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACGCATACACAT
ATTTCGAAATCACATATCGATGCCAACGTATTAAACGT
Found at i:72821502 original size:49 final size:48
Alignment explanation
Indices: 72821331--72821507 Score: 169
Period size: 49 Copynumber: 3.6 Consensus size: 48
72821321 TGAGTACACG
* * * *
72821331 TGTGT-GTACTAAGTGCAGGCTACTACGTGTACCATACTATTAAGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCA-A-TGTTAGGTCGCA
* * * * * *
72821380 TGCGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTAC-CAATG--TTAGGTCGCA
* *
72821431 TGTGTGGTACTAAGTGCAGGCTACTATGTGTACCGGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACC--AATGTTAGGTCGCA
72821480 TGTGTAGTACTAAGTGCAGGCTACTATG
1 TGTGTAGTACTAAGTGCAGGCTACTATG
72821508 CGTATCAGAT
Statistics
Matches: 104, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
49 36 0.35
50 29 0.28
51 36 0.35
52 3 0.03
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.31
Consensus pattern (48 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAATGTTAGGTCGCA
Found at i:72821524 original size:100 final size:100
Alignment explanation
Indices: 72821327--72821511 Score: 282
Period size: 100 Copynumber: 1.9 Consensus size: 100
72821317 ATTTTGAGTA
* *
72821327 CACGTGTGTGTACTAAGTGCAGGCTACTACGTGTACCATACTATTAAGTTGCATGCGTAGTACTA
1 CACGTGTGTGTACTAAGTGCAGGCTACTACGTGTACCAGACTATTAAGTCGCATGCGTAGTACTA
72821392 AGTGCAGGCTACTATGCGTACTCAATGACTTCGAT
66 AGTGCAGGCTACTATGCGTACTCAATGACTTCGAT
* * * * * *
72821427 CACGTGTGTGGTACTAAGTGCAGGCTACTATGTGTACCGGATTGTT-GGTCGCATGTGTAGTACT
1 CACGTGTGT-GTACTAAGTGCAGGCTACTACGTGTACCAGACTATTAAGTCGCATGCGTAGTACT
72821491 AAGTGCAGGCTACTATGCGTA
65 AAGTGCAGGCTACTATGCGTA
72821512 TCAGATAGCT
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
100 45 0.59
101 31 0.41
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.30
Consensus pattern (100 bp):
CACGTGTGTGTACTAAGTGCAGGCTACTACGTGTACCAGACTATTAAGTCGCATGCGTAGTACTA
AGTGCAGGCTACTATGCGTACTCAATGACTTCGAT
Found at i:72824772 original size:51 final size:49
Alignment explanation
Indices: 72824646--72824827 Score: 174
Period size: 51 Copynumber: 3.7 Consensus size: 49
72824636 TGAGTACACG
* * * *
72824646 TGTGTAGTACTAAGTGCAGGCTATTACGTGTACC-AT-ACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAATGAC--TTGA-TCACA
* *
72824696 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTAC-CAATGACTT-GATCACA
* * * *
72824747 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTG--TTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACC--AATGACTTGATCACA
*
72824796 TGTGTAGTACTAAGTGCAGGCTACTATGCGTA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTA
72824828 TCAGATAGCT
Statistics
Matches: 112, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
49 34 0.30
50 33 0.29
51 37 0.33
52 6 0.05
53 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAATGACTTGATCACA
Found at i:72824840 original size:100 final size:101
Alignment explanation
Indices: 72824642--72824827 Score: 320
Period size: 101 Copynumber: 1.9 Consensus size: 101
72824632 ATTTTGAGTA
* *
72824642 CACGTGTGTAGTACTAAGTGCAGGCTATTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCGCATGTGTAGTACT
72824707 AAGTGCAGGCTACTATGCGTACTCAATGACTTCGAT
66 AAGTGCAGGCTACTATGCGTACTCAATGACTTCGAT
* * *
72824743 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGTT-GGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCGCATGTGTAGTACT
72824807 AAGTGCAGGCTACTATGCGTA
66 AAGTGCAGGCTACTATGCGTA
72824828 TCAGATAGCT
Statistics
Matches: 80, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
100 38 0.47
101 42 0.52
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.30
Consensus pattern (101 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACTCAATGACTTCGAT
Found at i:72828915 original size:41 final size:40
Alignment explanation
Indices: 72828858--72829039 Score: 213
Period size: 41 Copynumber: 4.5 Consensus size: 40
72828848 ATGCCACTAT
* *
72828858 AAGT-CGAGAAATAGCGGCATTTTTGGAAAAACGCCGCCAA
1 AAGTCCGAGAATTAGCGGCATTTTT-CAAAAACGCCGCCAA
* **
72828898 AAGTCCGAGAATTAGCGGCGTTTTTCAAGAAACGCCGTAAA
1 AAGTCCGAGAATTAGCGGCATTTTTCAA-AAACGCCGCCAA
*
72828939 AAGTCCGAGAATTCGCGGCATTTTTCCAAAAACGCCGCCAA
1 AAGTCCGAGAATTAGCGGCATTTTT-CAAAAACGCCGCCAA
* * * *
72828980 AAGTCTGAGCATTAGCGGCATTTTTAGAAAAACGCCACCAA
1 AAGTCCGAGAATTAGCGGCATTTTT-CAAAAACGCCGCCAA
* *
72829021 AAGTCTGAGCATTAGCGGC
1 AAGTCCGAGAATTAGCGGC
72829040 GTTTCCAAAG
Statistics
Matches: 124, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
40 6 0.05
41 115 0.93
42 3 0.02
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (40 bp):
AAGTCCGAGAATTAGCGGCATTTTTCAAAAACGCCGCCAA
Found at i:72829013 original size:82 final size:82
Alignment explanation
Indices: 72828869--72829259 Score: 335
Period size: 82 Copynumber: 4.9 Consensus size: 82
72828859 AGTCGAGAAA
** * * *
72828869 TAGCGGCATTTTTGGAAAAACGCCGCCAAAAGTCCGAGAATTAGCGGCGTTTTTCA-AGAAACGC
1 TAGCGGCATTTTTCCAAAAACGCCGCCAAAAGTCTGAGCATTAGCGGCGTTTTT-AGAAAAACGC
* * *
72828933 CGTAAAAAGTCCGAGAAT
65 CGCAAAAAGTCTGAGCAT
* *
72828951 TCGCGGCATTTTTCCAAAAACGCCGCCAAAAGTCTGAGCATTAGCGGCATTTTTAGAAAAACGCC
1 TAGCGGCATTTTTCCAAAAACGCCGCCAAAAGTCTGAGCATTAGCGGCGTTTTTAGAAAAACGCC
* *
72829016 ACCAAAAGTCTGAGCAT
66 GCAAAAAGTCTGAGCAT
* * **
72829033 TAGCGGC--GTTTCC--AAA----G------GTCTGAGCGTTAGCGGCGTTTTTTACCAAAACGC
1 TAGCGGCATTTTTCCAAAAACGCCGCCAAAAGTCTGAGCATTAGCGGCG-TTTTTAGAAAAACGC
* * *
72829084 CACCAAAGGTCTGAGCAT
65 CGCAAAAAGTCTGAGCAT
* * ** * * * *
72829102 TAGCGACGTTTTTATAAAAACGCCGCCAAAAGTCTGAGTATTAGCGGCGTTTTTGGGAAAACGTC
1 TAGCGGCATTTTTCCAAAAACGCCGCCAAAAGTCTGAGCATTAGCGGCGTTTTTAGAAAAACGCC
72829167 GCAAAAAGTCTGAGCAT
66 GCAAAAAGTCTGAGCAT
* * ** ** *
72829184 TAGCAGCGTTTTTGGAAAAACGCCGTAAAAAGTCTGAGCATTAGCGGCGTTTTTAGAGAAACGCC
1 TAGCGGCATTTTTCCAAAAACGCCGCCAAAAGTCTGAGCATTAGCGGCGTTTTTAGAAAAACGCC
* *
72829249 GCTAAACGTCT
66 GCAAAAAGTCT
72829260 TTTTTGAATT
Statistics
Matches: 248, Mismatches: 45, Indels: 32
0.76 0.14 0.10
Matches are distributed among these distances:
68 16 0.06
69 36 0.15
71 3 0.01
73 3 0.01
74 1 0.00
77 1 0.00
78 3 0.01
80 5 0.02
81 1 0.00
82 163 0.66
83 16 0.06
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.24
Consensus pattern (82 bp):
TAGCGGCATTTTTCCAAAAACGCCGCCAAAAGTCTGAGCATTAGCGGCGTTTTTAGAAAAACGCC
GCAAAAAGTCTGAGCAT
Found at i:72829047 original size:27 final size:27
Alignment explanation
Indices: 72829017--72829070 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
72829007 AAAAACGCCA
72829017 CCAAAAGTCTGAGCATTAGCGGCGTTT
1 CCAAAAGTCTGAGCATTAGCGGCGTTT
* *
72829044 CCAAAGGTCTGAGCGTTAGCGGCGTTT
1 CCAAAAGTCTGAGCATTAGCGGCGTTT
72829071 TTTACCAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (27 bp):
CCAAAAGTCTGAGCATTAGCGGCGTTT
Found at i:72829057 original size:68 final size:69
Alignment explanation
Indices: 72828976--72829112 Score: 204
Period size: 69 Copynumber: 2.0 Consensus size: 69
72828966 AAAAACGCCG
* *
72828976 CCAAAAGTCTGAGCATTAGCGGC-ATTTTTAGAAAAACGCCACCAAAAGTCTGAGCATTAGCGGC
1 CCAAAAGTCTGAGCATTAGCGGCGATTTTTACAAAAACGCCACCAAAAGTCTGAGCATTAGCGAC
72829040 GTTT
66 GTTT
* * * * *
72829044 CCAAAGGTCTGAGCGTTAGCGGCGTTTTTTACCAAAACGCCACCAAAGGTCTGAGCATTAGCGAC
1 CCAAAAGTCTGAGCATTAGCGGCGATTTTTACAAAAACGCCACCAAAAGTCTGAGCATTAGCGAC
72829109 GTTT
66 GTTT
72829113 TTATAAAAAC
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
68 21 0.34
69 40 0.66
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.24
Consensus pattern (69 bp):
CCAAAAGTCTGAGCATTAGCGGCGATTTTTACAAAAACGCCACCAAAAGTCTGAGCATTAGCGAC
GTTT
Found at i:72829131 original size:41 final size:41
Alignment explanation
Indices: 72829044--72829259 Score: 243
Period size: 41 Copynumber: 5.2 Consensus size: 41
72829034 AGCGGCGTTT
* * ** *
72829044 CCAAAGGTCTGAGCGTTAGCGGCGTTTTTTACCAAAACGCCA
1 CCAAAAGTCTGAGCATTAGCGGCG-TTTTTAGAAAAACGCCG
* * *
72829086 CCAAAGGTCTGAGCATTAGCGACGTTTTTATAAAAACGCCG
1 CCAAAAGTCTGAGCATTAGCGGCGTTTTTAGAAAAACGCCG
* * * *
72829127 CCAAAAGTCTGAGTATTAGCGGCGTTTTTGGGAAAACGTCG
1 CCAAAAGTCTGAGCATTAGCGGCGTTTTTAGAAAAACGCCG
* * *
72829168 CAAAAAGTCTGAGCATTAGCAGCGTTTTTGGAAAAACGCCG
1 CCAAAAGTCTGAGCATTAGCGGCGTTTTTAGAAAAACGCCG
** *
72829209 TAAAAAGTCTGAGCATTAGCGGCGTTTTTAGAGAAACGCCG
1 CCAAAAGTCTGAGCATTAGCGGCGTTTTTAGAAAAACGCCG
* *
72829250 CTAAACGTCT
1 CCAAAAGTCT
72829260 TTTTTGAATT
Statistics
Matches: 150, Mismatches: 24, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
41 128 0.85
42 22 0.15
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (41 bp):
CCAAAAGTCTGAGCATTAGCGGCGTTTTTAGAAAAACGCCG
Found at i:72829217 original size:192 final size:192
Alignment explanation
Indices: 72828885--72829235 Score: 479
Period size: 192 Copynumber: 1.8 Consensus size: 192
72828875 CATTTTTGGA
* * * *
72828885 AAAACGCCGCCAAAAGTCCGAGAATTAGCGGCGTTTTTCAAGAAACGCCGTAAAAAGTCCGAGAA
1 AAAACGCCACCAAAAGTCCGAGAATTAGCGACGTTTTTCAAAAAACGCCGCAAAAAGTCCGAGAA
* * *
72828950 TTCGCGGCATTTTTCCAAAAACGCCGCCAAAAGTCTGAGCATTAGCGGCATTTTTAGAAAAACGC
66 TTAGCGGCATTTTTCCAAAAACGCCGCAAAAAGTCTGAGCATTAGCAGCATTTTTAGAAAAACGC
*
72829015 CACCAAAAGTCTGAGCATTAGCGGCGTTTCCAAAGGTCTGAGCGTTAGCGGCGTTTTTTACC
131 CACAAAAAGTCTGAGCATTAGCGGCGTTTCCAAAGGTCTGAGCGTTAGCGGCGTTTTTTACC
* * * * * *
72829077 AAAACGCCACCAAAGGTCTGAGCATTAGCGACGTTTTT-ATAAAAACGCCGCCAAAAGTCTGAGT
1 AAAACGCCACCAAAAGTCCGAGAATTAGCGACGTTTTTCA-AAAAACGCCGCAAAAAGTCCGAGA
* *** * * *
72829141 ATTAGCGGCGTTTTTGGGAAAACGTCGCAAAAAGTCTGAGCATTAGCAGCGTTTTTGGAAAAACG
65 ATTAGCGGCATTTTTCCAAAAACGCCGCAAAAAGTCTGAGCATTAGCAGCATTTTTAGAAAAACG
**
72829206 CCGTAAAAAGTCTGAGCATTAGCGGCGTTT
130 CCACAAAAAGTCTGAGCATTAGCGGCGTTT
72829236 TTAGAGAAAC
Statistics
Matches: 135, Mismatches: 23, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
191 1 0.01
192 134 0.99
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.23
Consensus pattern (192 bp):
AAAACGCCACCAAAAGTCCGAGAATTAGCGACGTTTTTCAAAAAACGCCGCAAAAAGTCCGAGAA
TTAGCGGCATTTTTCCAAAAACGCCGCAAAAAGTCTGAGCATTAGCAGCATTTTTAGAAAAACGC
CACAAAAAGTCTGAGCATTAGCGGCGTTTCCAAAGGTCTGAGCGTTAGCGGCGTTTTTTACC
Found at i:72830211 original size:14 final size:14
Alignment explanation
Indices: 72830169--72830212 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
72830159 GCGGTATTAA
72830169 GGTTTAAGGGTTAG
1 GGTTTAAGGGTTAG
*
72830183 TGG-TTAGGGGTTAG
1 -GGTTTAAGGGTTAG
*
72830197 GGTTTAAGGGATAG
1 GGTTTAAGGGTTAG
72830211 GG
1 GG
72830213 GATAAGTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
13 2 0.08
14 21 0.84
15 2 0.08
ACGTcount: A:0.20, C:0.00, G:0.48, T:0.32
Consensus pattern (14 bp):
GGTTTAAGGGTTAG
Found at i:72830596 original size:22 final size:22
Alignment explanation
Indices: 72830565--72830642 Score: 79
Period size: 22 Copynumber: 3.6 Consensus size: 22
72830555 ATTTAGTATC
72830565 TAGAATTTAGGGTTTAATG-TT
1 TAGAATTTAGGGTTTAATGCTT
* *
72830586 TATAATGTTAGGGTTTTATGCTT
1 TAGAAT-TTAGGGTTTAATGCTT
* *
72830609 TAGAGTTTAGGGTTTAA-GATT
1 TAGAATTTAGGGTTTAATGCTT
**
72830630 TAGGGTTTAGGGT
1 TAGAATTTAGGGT
72830643 CTGATTTTGT
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
21 20 0.42
22 22 0.46
23 6 0.12
ACGTcount: A:0.24, C:0.01, G:0.28, T:0.46
Consensus pattern (22 bp):
TAGAATTTAGGGTTTAATGCTT
Found at i:72830624 original size:14 final size:15
Alignment explanation
Indices: 72830607--72830639 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
72830597 GGTTTTATGC
72830607 TTTAGAG-TTTAGGG
1 TTTAGAGATTTAGGG
72830621 TTTA-AGATTTAGGG
1 TTTAGAGATTTAGGG
72830635 TTTAG
1 TTTAG
72830640 GGTCTGATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 2 0.12
14 15 0.88
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.45
Consensus pattern (15 bp):
TTTAGAGATTTAGGG
Found at i:72830631 original size:21 final size:20
Alignment explanation
Indices: 72830565--72830642 Score: 66
Period size: 21 Copynumber: 3.6 Consensus size: 20
72830555 ATTTAGTATC
72830565 TAGAATTTAGGGTTTAATGTT
1 TAGAATTTAGGGTTTAA-GTT
* *
72830586 TATAATGTTAGGGTTTTATGCTT
1 TAGAAT-TTAGGG-TTTAAG-TT
*
72830609 TAGAGTTTAGGGTTTAAGATT
1 TAGAATTTAGGGTTTAAG-TT
**
72830630 TAGGGTTTAGGGT
1 TAGAATTTAGGGT
72830643 CTGATTTTGT
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
21 24 0.51
22 13 0.28
23 10 0.21
ACGTcount: A:0.24, C:0.01, G:0.28, T:0.46
Consensus pattern (20 bp):
TAGAATTTAGGGTTTAAGTT
Found at i:72832575 original size:54 final size:54
Alignment explanation
Indices: 72832511--72832614 Score: 199
Period size: 54 Copynumber: 1.9 Consensus size: 54
72832501 ACTGTTGGAC
*
72832511 GTTTCCCATTTAATCAGTTATTGCTTCCTGCTTCTCCTGCAAGTATTGGTTGAA
1 GTTTCCCATTTAATCAGTTATTGCTTCCTGCTCCTCCTGCAAGTATTGGTTGAA
72832565 GTTTCCCATTTAATCAGTTATTGCTTCCTGCTCCTCCTGCAAGTATTGGT
1 GTTTCCCATTTAATCAGTTATTGCTTCCTGCTCCTCCTGCAAGTATTGGT
72832615 GCAACTAAAG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.17, C:0.24, G:0.16, T:0.42
Consensus pattern (54 bp):
GTTTCCCATTTAATCAGTTATTGCTTCCTGCTCCTCCTGCAAGTATTGGTTGAA
Done.