Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 215 of 235
Found at i:72838322 original size:21 final size:21
Alignment explanation
Indices: 72838298--72838346 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
72838288 TCTAGCCGAT
*
72838298 GCAGCTGAGAGGAAGGCAGCG
1 GCAGCAGAGAGGAAGGCAGCG
* *
72838319 GCAGCAGCGAGGGAGGCAGCG
1 GCAGCAGAGAGGAAGGCAGCG
*
72838340 ACAGCAG
1 GCAGCAG
72838347 CGAGAGAGGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.47, T:0.02
Consensus pattern (21 bp):
GCAGCAGAGAGGAAGGCAGCG
Found at i:72838347 original size:21 final size:21
Alignment explanation
Indices: 72838306--72838358 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
72838296 ATGCAGCTGA
* *
72838306 GAGGAAGGCAGCGGCAGCAGC
1 GAGGGAGGCAGCGACAGCAGC
72838327 GAGGGAGGCAGCGACAGCAGC
1 GAGGGAGGCAGCGACAGCAGC
*
72838348 GAGAGAGGCAG
1 GAGGGAGGCAG
72838359 AGCAGAGCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.30, C:0.21, G:0.49, T:0.00
Consensus pattern (21 bp):
GAGGGAGGCAGCGACAGCAGC
Found at i:72838750 original size:43 final size:42
Alignment explanation
Indices: 72838688--72839166 Score: 147
Period size: 43 Copynumber: 11.1 Consensus size: 42
72838678 TGTAAATTTA
*
72838688 GCGGCGTTTGTGGGGAAAGCGCCGCTAAAGGACTCTACTTTTG
1 GCGGCGTTTGT-GGTAAAGCGCCGCTAAAGGACTCTACTTTTG
* * * * *
72838731 GCGGCATTTGTGGATAAAGCACCGCTAAAAGGTCTGTATTTTTG
1 GCGGCGTTTGTGG-TAAAGCGCCGCT-AAAGGACTCTACTTTTG
* * * * * ** *
72838775 GCGGCGTTTTTGGTGTAAGCGCCGCTATAGGTCTGTAAATTTA
1 GCGGCGTTTGTGGT-AAAGCGCCGCTAAAGGACTCTACTTTTG
** * * * * *
72838818 GCGGTTTTTTTGGGCTAAAGCTCCGCTAAAGGTCTATACTTTTA
1 GCGGCGTTTGT-GG-TAAAGCGCCGCTAAAGGACTCTACTTTTG
*** * * * *
72838862 GCGGCGCTTTG-CAAACAAACGCCGCTAAAGGTC-CGCACTTTTA
1 GCGGCG-TTTGTGGTA-AAGCGCCGCTAAAGGACTC-TACTTTTG
*** * * * *
72838905 GCGGCGCTTTCCCCG-AAAACGCCGCTAAAGGTCTAC-ACCTTTA
1 GCGGCG-TTT-GTGGTAAAGCGCCGCTAAAGGACT-CTACTTTTG
* * * * *
72838948 GTGGCGTTTGTGGATAAAACGCCGCTAAAGGTCTGC-ACCTTTA
1 GCGGCGTTTGTGG-TAAAGCGCCGCTAAAGGACT-CTACTTTTG
* * *
72838991 GCGGCGTTTTTTGGGT-AAGCGCCGCTAAAGGTA-TGTGA-TTTTA
1 GCGGCG-TTTGT-GGTAAAGCGCCGCTAAAGG-ACTCT-ACTTTTG
* * * *
72839034 GCGACGTTTTTTGGGT-AAGCGCCGCTAAAGGTA-TGTGA-TTTTA
1 GCGGCG-TTTGT-GGTAAAGCGCCGCTAAAGG-ACTCT-ACTTTTG
* * * * *
72839077 GCGGCGTTTGTTTGCT-AAGCGCCGCTAAAGGTCTATACTATTA
1 GCGGCGTTTG--TGGTAAAGCGCCGCTAAAGGACTCTACTTTTG
* * *
72839120 GCCGCGTTTATGGTAAAGCGCCGCTAAAGGTA-TCTACTTTTA
1 GCGGCGTTTGTGGTAAAGCGCCGCTAAAGG-ACTCTACTTTTG
72839162 GCGGC
1 GCGGC
72839167 ATTTTCCGTT
Statistics
Matches: 351, Mismatches: 60, Indels: 51
0.76 0.13 0.11
Matches are distributed among these distances:
41 4 0.01
42 37 0.11
43 232 0.66
44 70 0.20
45 8 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.30
Consensus pattern (42 bp):
GCGGCGTTTGTGGTAAAGCGCCGCTAAAGGACTCTACTTTTG
Found at i:72839014 original size:86 final size:84
Alignment explanation
Indices: 72838684--72839171 Score: 301
Period size: 86 Copynumber: 5.7 Consensus size: 84
72838674 AATCTGTAAA
** * * * * * *
72838684 TTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGGACT-CTACTTTTGGCGGC-ATTTGTGGATA
1 TTTAGCGGCGTTT-TGGATAAAACGCCGCTAAAGGTCTGC-ACTTTTAGCGGCGTTTTTTGGGT-
* * *
72838747 AAGCACCGCTAAAAGGTCTGTATT
63 AAGCGCCGCT-AAAGGTCTATA-C
* * * * * ** *
72838771 TTTGGCGGCGTTTTTGG-TGTAAGCGCCGCTATAGGTCTGTAAATTTAGCGG-TTTTTTTGGGCT
1 TTTAGCGGCG-TTTTGGAT-AAAACGCCGCTAAAGGTCTGCACTTTTAGCGGCGTTTTTTGGG-T
*
72838834 AAAGCTCCGCTAAAGGTCTATAC
63 -AAGCGCCGCTAAAGGTCTATAC
* * * * * **** *
72838857 TTTTAGCGGCGCTTTGCAAACAAACGCCGCTAAAGGTCCGCACTTTTAGCGGCGCTTTCCCCGAA
1 -TTTAGCGGCGTTTTGGATA-AAACGCCGCTAAAGGTCTGCACTTTTAGCGGCGTTTTTTGGGTA
* *
72838922 AACGCCGCTAAAGGTCTACACC
64 AGCGCCGCTAAAGGTCTATA-C
* *
72838944 TTTAGTGGCGTTTGTGGATAAAACGCCGCTAAAGGTCTGCACCTTTAGCGGCGTTTTTTGGGTAA
1 TTTAGCGGCGTTT-TGGATAAAACGCCGCTAAAGGTCTGCACTTTTAGCGGCGTTTTTTGGGTAA
* * *
72839009 GCGCCGCTAAAGGTATGTGAT
65 GCGCCGCTAAAGGTCTAT-AC
* * * * * *
72839030 TTTAGCGACGTTTTTTGGGT-AAGCGCCGCTAAAGGTATGTGA-TTTTAGCGGCGTTTGTTT-GC
1 TTTAGCGGCG--TTTTGGATAAAACGCCGCTAAAGGTCTG-CACTTTTAGCGGCGTTT-TTTGGG
72839092 TAAGCGCCGCTAAAGGTCTATAC
62 TAAGCGCCGCTAAAGGTCTATAC
* * * *
72839115 TATTAGCCGCGTTTATGG-TAAAGCGCCGCTAAAGGTAT-CTACTTTTAGCGGCATTTT
1 T-TTAGCGGCGTTT-TGGATAAAACGCCGCTAAAGGTCTGC-ACTTTTAGCGGCGTTTT
72839172 CCGTTCAAAC
Statistics
Matches: 312, Mismatches: 68, Indels: 45
0.73 0.16 0.11
Matches are distributed among these distances:
84 6 0.02
85 36 0.12
86 149 0.48
87 100 0.32
88 21 0.07
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (84 bp):
TTTAGCGGCGTTTTGGATAAAACGCCGCTAAAGGTCTGCACTTTTAGCGGCGTTTTTTGGGTAAG
CGCCGCTAAAGGTCTATAC
Found at i:72844645 original size:24 final size:24
Alignment explanation
Indices: 72844618--72844709 Score: 141
Period size: 24 Copynumber: 3.8 Consensus size: 24
72844608 GTCAAGAGAA
72844618 GATTTAGGAGCTGATAAGGGAAAG
1 GATTTAGGAGCTGATAAGGGAAAG
*
72844642 GATTTAGGAGCTGATAAGGGAGAG
1 GATTTAGGAGCTGATAAGGGAAAG
*
72844666 GATTTAGGAGCTGATAAAGGAGAA-
1 GATTTAGGAGCTGATAAGGGA-AAG
72844690 GATTTAGGAGCTGATCAAGG
1 GATTTAGGAGCTGAT-AAGG
72844710 AGCATGAGTT
Statistics
Matches: 62, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
24 58 0.94
25 4 0.06
ACGTcount: A:0.36, C:0.05, G:0.37, T:0.22
Consensus pattern (24 bp):
GATTTAGGAGCTGATAAGGGAAAG
Found at i:72864123 original size:27 final size:28
Alignment explanation
Indices: 72864039--72864136 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
72864029 CATGAGATTG
* * * *
72864039 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
72864068 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
72864096 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
72864123 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
72864137 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:72864147 original size:27 final size:27
Alignment explanation
Indices: 72864067--72864149 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
72864057 TAAATTGTAC
* *
72864067 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
72864095 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
72864122 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
72864149 A
1 A
72864150 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:72864150 original size:29 final size:27
Alignment explanation
Indices: 72864039--72864150 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
72864029 CATGAGATTG
** * *
72864039 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
72864068 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
72864096 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
72864123 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
72864151 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:72886096 original size:40 final size:38
Alignment explanation
Indices: 72886044--72886155 Score: 125
Period size: 39 Copynumber: 2.9 Consensus size: 38
72886034 TAAGGTCCGC
* *
72886044 AGGCTATGTGCTGGAATTATATCCGGGTTTAAATACCCGT
1 AGGCTATATGCTGGAATTATATCCGGGTTTAAAT--CCAT
* ** *
72886084 AGGCTATATGCTGGAATTATTTCCGGACTTAAGGTCCAT
1 AGGCTATATGCTGGAATTATATCCGGGTTTAA-ATCCAT
* *
72886123 GGGCTATATGCTGGAAATATATCCGGGTTTAAA
1 AGGCTATATGCTGGAATTATATCCGGGTTTAAA
72886156 GTCTCGAAGG
Statistics
Matches: 59, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
39 30 0.51
40 28 0.47
41 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (38 bp):
AGGCTATATGCTGGAATTATATCCGGGTTTAAATCCAT
Found at i:72889553 original size:40 final size:40
Alignment explanation
Indices: 72889459--72889683 Score: 258
Period size: 40 Copynumber: 5.6 Consensus size: 40
72889449 TATTCGAATG
*
72889459 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
72889500 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
72889540 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
72889580 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
72889620 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
72889660 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
72889684 CTTGTGCAAG
Statistics
Matches: 158, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 1 0.01
40 127 0.80
41 29 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:72889639 original size:80 final size:80
Alignment explanation
Indices: 72889459--72889719 Score: 312
Period size: 80 Copynumber: 3.3 Consensus size: 80
72889449 TATTCGAATG
* * * *
72889459 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
72889524 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * *
72889540 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
72889605 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * *
72889620 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
72889685 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
72889699 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
72889720 ATTACTTGAG
Statistics
Matches: 155, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 95 0.61
81 32 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:72889673 original size:120 final size:120
Alignment explanation
Indices: 72889459--72889719 Score: 325
Period size: 120 Copynumber: 2.2 Consensus size: 120
72889449 TATTCGAATG
* * *
72889459 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * * *
72889524 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * *
72889580 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * *
72889643 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
72889699 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
72889720 ATTACTTGAG
Statistics
Matches: 122, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
118 15 0.12
119 19 0.16
120 57 0.47
121 31 0.25
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:72894669 original size:12 final size:12
Alignment explanation
Indices: 72894652--72894676 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
72894642 TTATTACGCA
72894652 ATTATTGTTATT
1 ATTATTGTTATT
72894664 ATTATTGTTATT
1 ATTATTGTTATT
72894676 A
1 A
72894677 CTGAGTTATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (12 bp):
ATTATTGTTATT
Found at i:72895032 original size:47 final size:47
Alignment explanation
Indices: 72894977--72895095 Score: 175
Period size: 47 Copynumber: 2.5 Consensus size: 47
72894967 TTGGCATTAG
*
72894977 GACAAGGATACCATGTAAGACCATGTTTGGAACCTAGAATTTGGTAA
1 GACAAGGATACCATGTAAGACCATGTTTGGAACATAGAATTTGGTAA
* * *
72895024 GACAAGGATACCATGTAAGACCATCTTTGGAACATGGCATTTGGTAA
1 GACAAGGATACCATGTAAGACCATGTTTGGAACATAGAATTTGGTAA
* * *
72895071 GATAAGGATATCATATAAGACCATG
1 GACAAGGATACCATGTAAGACCATG
72895096 CCAAGGAATG
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 64 1.00
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.25
Consensus pattern (47 bp):
GACAAGGATACCATGTAAGACCATGTTTGGAACATAGAATTTGGTAA
Found at i:72895201 original size:55 final size:54
Alignment explanation
Indices: 72895074--72895270 Score: 222
Period size: 55 Copynumber: 3.6 Consensus size: 54
72895064 TTGGTAAGAT
* * * *
72895074 AAGGATATCATATAAGACCATGCCAAGGA-ATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAA-GACATGGCATTGATGAGTTATATAAGGC
* * *
72895128 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTAATATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-ATATAAGGC
* * *
72895183 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATA-AA-GC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-ATATAAGGC
* *
72895236 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
72895271 ATGGTAAGTT
Statistics
Matches: 123, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
52 4 0.03
53 30 0.24
54 40 0.33
55 45 0.37
56 4 0.03
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTATATAAGGC
Found at i:72895268 original size:53 final size:53
Alignment explanation
Indices: 72895074--72895287 Score: 216
Period size: 53 Copynumber: 4.0 Consensus size: 53
72895064 TTGGTAAGAT
* * *
72895074 AAGGATATCATATAAGACCATGCCAAGGA-ATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAA-GACATGGCATTGATAAGTTC-ATAAAGC
* * * * *
72895128 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTAATATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCATA-AA-GC
* * * *
72895183 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAAGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCATAAAGC
* * * * *
72895236 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCAAAAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCATAAAG
72895288 AAAAGGTTCC
Statistics
Matches: 135, Mismatches: 20, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
52 4 0.03
53 47 0.35
54 41 0.30
55 39 0.29
56 4 0.03
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCATAAAGC
Found at i:72904136 original size:12 final size:12
Alignment explanation
Indices: 72904119--72904148 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
72904109 TTAATTTTTA
72904119 TGATTTACCGAG
1 TGATTTACCGAG
72904131 TGATTTACCGAG
1 TGATTTACCGAG
*
72904143 TAATTT
1 TGATTT
72904149 GCCCATTAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (12 bp):
TGATTTACCGAG
Found at i:72907796 original size:27 final size:26
Alignment explanation
Indices: 72907779--72907848 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
72907769 ATATTAAGTC
72907779 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
72907806 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
72907834 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
72907849 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:72907842 original size:28 final size:28
Alignment explanation
Indices: 72907779--72907873 Score: 129
Period size: 28 Copynumber: 3.4 Consensus size: 28
72907769 ATATTAAGTC
*
72907779 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
72907806 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
72907834 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
72907863 CGCACACTTAG
1 CGCACACTTAG
72907874 CGCCAATCTC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.36
28 23 0.38
29 16 0.26
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:72913326 original size:28 final size:28
Alignment explanation
Indices: 72913286--72913355 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
72913276 TATCAGATTG
*
72913286 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
* *
72913314 GCACTAAGAGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
72913342 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72913356 GACTTACTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 35 0.95
29 2 0.05
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:72917221 original size:109 final size:109
Alignment explanation
Indices: 72917086--72917404 Score: 510
Period size: 101 Copynumber: 3.0 Consensus size: 109
72917076 GGAATTAACG
72917086 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
1 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
72917151 TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
66 TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
*
72917195 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTACGGCATTATGGTATAC
1 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
72917260 -TTAATATATG-T--TA-A-TATA-TT-ATAAAAGATGAAAGTA
66 TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
* * *
72917296 GTCGACCAATATGCATGGATTAATGACTTGAATTGTTTATTATATTTTATGGCATTATGGTATAC
1 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
* * * *
72917361 TTTAATATATGTTAATATATTATGTTTAAGAAGAGAGGAAAGTA
66 TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
72917405 TTCATCTTTC
Statistics
Matches: 193, Mismatches: 9, Indels: 16
0.89 0.04 0.07
Matches are distributed among these distances:
101 77 0.40
102 12 0.06
103 5 0.03
104 1 0.01
105 4 0.02
106 1 0.01
107 4 0.02
108 12 0.06
109 77 0.40
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (109 bp):
GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
Found at i:72917838 original size:28 final size:28
Alignment explanation
Indices: 72917769--72917838 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
72917759 TATGAGATTG
*
72917769 GCACTAAGTGTGCAAGTTTAATTGTATA
1 GCACTAAGTGTGCGAGTTTAATTGTATA
* *
72917797 GCACTAAGTGTGCGAGTTTGATTAT-TAA
1 GCACTAAGTGTGCGAGTTTAATTGTAT-A
72917825 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72917839 GACTTACTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 1 0.03
28 37 0.97
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTGTATA
Found at i:72920826 original size:13 final size:13
Alignment explanation
Indices: 72920787--72920830 Score: 70
Period size: 13 Copynumber: 3.4 Consensus size: 13
72920777 GGACATGCTT
*
72920787 GTGTGACACGCCT
1 GTGTGACACGCCC
72920800 GTGTGACACGCCC
1 GTGTGACACGCCC
*
72920813 GTGTGACACCCCC
1 GTGTGACACGCCC
72920826 GTGTG
1 GTGTG
72920831 TGATTACTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.14, C:0.34, G:0.32, T:0.20
Consensus pattern (13 bp):
GTGTGACACGCCC
Found at i:72924514 original size:56 final size:56
Alignment explanation
Indices: 72924430--72924535 Score: 169
Period size: 56 Copynumber: 1.9 Consensus size: 56
72924420 ATTCAAGCAT
* *
72924430 TTTCTTTTTCGTATCAACTATCAGGACAAGCATTG-GATGTGGAAAAAAAATTAACA
1 TTTCCTTTTCATATCAACTATCAGGACAAGCA-TGCGATGTGGAAAAAAAATTAACA
*
72924486 TTTCCTTTTCATATCAACTATCAGGACAAGCATGCGATGTTGAAAAAAAA
1 TTTCCTTTTCATATCAACTATCAGGACAAGCATGCGATGTGGAAAAAAAA
72924536 AGTTAACCCA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
55 2 0.04
56 44 0.96
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (56 bp):
TTTCCTTTTCATATCAACTATCAGGACAAGCATGCGATGTGGAAAAAAAATTAACA
Found at i:72929775 original size:17 final size:17
Alignment explanation
Indices: 72929753--72929790 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
72929743 AAAATATAAT
72929753 ATTTTTAATTTAAT-TTA
1 ATTTTT-ATTTAATATTA
*
72929770 ATTTTTATTTTATATTA
1 ATTTTTATTTAATATTA
72929787 ATTT
1 ATTT
72929791 ACTTAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
ATTTTTATTTAATATTA
Found at i:72936354 original size:1 final size:1
Alignment explanation
Indices: 72936350--72936403 Score: 108
Period size: 1 Copynumber: 54.0 Consensus size: 1
72936340 TGTTGTTTCC
72936350 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
72936404 GAGGGGGGGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 53 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:72941240 original size:93 final size:93
Alignment explanation
Indices: 72941077--72941250 Score: 287
Period size: 93 Copynumber: 1.9 Consensus size: 93
72941067 GACAAAACCT
* * * **
72941077 CACCAGCTACAGGATTTAACTTCCTTTCAGCTGATGAACCTGTTGGAGATGCAACTGGCTTCATT
1 CACCAGCTACAGGAGTTAACTTCCTTTCAGCAGATGAACCTGTTGGAGATGCAACAGGAGTCATT
72941142 CCATCATCAACATTCATACATGATGAAC
66 CCATCATCAACATTCATACATGATGAAC
72941170 CACCAGCTACAGGAGTTAACTTCCTTTCAGCAGATGAACCTGTTGGAGATGCAACAGGAGTC-TT
1 CACCAGCTACAGGAGTTAACTTCCTTTCAGCAGATGAACCTGTTGGAGATGCAACAGGAGTCATT
72941234 CTCATCATCAACATTCA
66 C-CATCATCAACATTCA
72941251 CACAAGAAGC
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
92 3 0.04
93 72 0.96
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (93 bp):
CACCAGCTACAGGAGTTAACTTCCTTTCAGCAGATGAACCTGTTGGAGATGCAACAGGAGTCATT
CCATCATCAACATTCATACATGATGAAC
Found at i:72944258 original size:8 final size:8
Alignment explanation
Indices: 72944247--72944271 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
72944237 CTTCCTCCTC
72944247 CCCTCTCT
1 CCCTCTCT
72944255 CCCTCTCT
1 CCCTCTCT
72944263 CCCTCTCT
1 CCCTCTCT
72944271 C
1 C
72944272 TCCTACCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.64, G:0.00, T:0.36
Consensus pattern (8 bp):
CCCTCTCT
Found at i:72947774 original size:186 final size:185
Alignment explanation
Indices: 72947460--72947824 Score: 651
Period size: 186 Copynumber: 2.0 Consensus size: 185
72947450 TATTTTATCA
72947460 AGATAATGATTTAGAAAATAAAAAATTTATCCTCAAAAAATTAAAATAAAAAATTTAATATAATG
1 AGATAATGATTTAGAAAATAAAAAATTTATCCTCAAAAAATTAAAATAAAAAATTTAATATAATG
*
72947525 AATAACGCATTCCATGCAATTTAAATATGGTATTAATTTTAATTGCGTAAATAATTGATTCGTAA
66 AATAACGCATTCCATGCAATTTAAATATGGTATTAATTTTAATAGCGTAAATAATTGATTCGTAA
* *
72947590 AAAAATTTAAATATTATCTATAATTATTGTTGTTATATTA-TTATTATTATGAAATT
131 AAAAAATTAAATATTATCTATAATTATTGTTGTAAT-TTAGTTA-TATTATGAAATT
*
72947646 AGATAATGATTTAGAAAATAAAAAATTTATCCTCAAAAAATTACAATAAAAAATTTAATATAATG
1 AGATAATGATTTAGAAAATAAAAAATTTATCCTCAAAAAATTAAAATAAAAAATTTAATATAATG
*
72947711 AATAACGCATTCCATGCAATTTAAATATGGTATTAATTTTAATAGTGTAAATAATTGATTCGTAA
66 AATAACGCATTCCATGCAATTTAAATATGGTATTAATTTTAATAGCGTAAATAATTGATTCGTAA
*
72947776 AAAAAATTAAATATTATCTATATTTATTGTTGTAATTTAGTTATATTAT
131 AAAAAATTAAATATTATCTATAATTATTGTTGTAATTTAGTTATATTAT
72947825 TATTATCATC
Statistics
Matches: 172, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
185 9 0.05
186 163 0.95
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.39
Consensus pattern (185 bp):
AGATAATGATTTAGAAAATAAAAAATTTATCCTCAAAAAATTAAAATAAAAAATTTAATATAATG
AATAACGCATTCCATGCAATTTAAATATGGTATTAATTTTAATAGCGTAAATAATTGATTCGTAA
AAAAAATTAAATATTATCTATAATTATTGTTGTAATTTAGTTATATTATGAAATT
Found at i:72954575 original size:32 final size:32
Alignment explanation
Indices: 72954539--72954600 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
72954529 ATGCATTTTA
72954539 GCATTTTAATAGTTAATGGATGATGGGCATTG
1 GCATTTTAATAGTTAATGGATGATGGGCATTG
72954571 GCATTTTAATAGTTAATGGATGATGGGCAT
1 GCATTTTAATAGTTAATGGATGATGGGCAT
72954601 GGTAAGCATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.29, C:0.06, G:0.27, T:0.37
Consensus pattern (32 bp):
GCATTTTAATAGTTAATGGATGATGGGCATTG
Found at i:72964088 original size:15 final size:14
Alignment explanation
Indices: 72964050--72964088 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
72964040 TGATCTATGT
*
72964050 AATAATTAAATTAA
1 AATAATTATATTAA
*
72964064 AATTATTATATTAA
1 AATAATTATATTAA
72964078 AATACATTATA
1 AATA-ATTATA
72964089 ATATTCATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (14 bp):
AATAATTATATTAA
Found at i:72975214 original size:12 final size:13
Alignment explanation
Indices: 72975180--72975219 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
72975170 TTTTTTTAAG
72975180 TAGTTTATTGATA
1 TAGTTTATTGATA
72975193 TAGTCATTATT-ATA
1 TAGT--TTATTGATA
72975207 TAGTTTATTGATA
1 TAGTTTATTGATA
72975220 AAAATAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
12 5 0.21
13 7 0.29
14 7 0.29
15 5 0.21
ACGTcount: A:0.33, C:0.03, G:0.12, T:0.53
Consensus pattern (13 bp):
TAGTTTATTGATA
Found at i:72992135 original size:27 final size:28
Alignment explanation
Indices: 72992104--72992187 Score: 120
Period size: 27 Copynumber: 3.1 Consensus size: 28
72992094 AGTACTCTCA
72992104 ATTTACAGAATTACCGTTTTACCCTTAG
1 ATTTACAGAATTACCGTTTTACCCTTAG
** *
72992132 -TTTACAGAATTACTATTTTACCC-TCG
1 ATTTACAGAATTACCGTTTTACCCTTAG
72992158 ATTTACAGAATTACCGTTTTACCCTT-G
1 ATTTACAGAATTACCGTTTTACCCTTAG
72992185 ATT
1 ATT
72992188 GTGAAATTAC
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
26 2 0.04
27 46 0.94
28 1 0.02
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (28 bp):
ATTTACAGAATTACCGTTTTACCCTTAG
Found at i:72992222 original size:27 final size:27
Alignment explanation
Indices: 72992192--72992386 Score: 248
Period size: 27 Copynumber: 7.2 Consensus size: 27
72992182 TTGATTGTGA
72992192 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
72992219 AATTTCTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
72992246 AATTACTGAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
**
72992273 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
72992300 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
72992327 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
72992354 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
72992381 AATTAC
1 AATTAC
72992387 CATTTTGCCC
Statistics
Matches: 145, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
27 144 0.99
28 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:72992647 original size:27 final size:26
Alignment explanation
Indices: 72992586--72992661 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 26
72992576 CGGAGGAAGC
*
72992586 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
72992613 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
72992639 GTATTTGGTGACTCTGTCACAAT
1 GT-TCTGGTGGCTCTGCCACAAT
72992662 TTTTGTTGAC
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 9 0.20
27 35 0.80
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:72992952 original size:6 final size:6
Alignment explanation
Indices: 72992941--72993100 Score: 125
Period size: 6 Copynumber: 26.3 Consensus size: 6
72992931 TATTATAATA
* *
72992941 CTGATT CTGATT CTGATT CTG-TT ATTGATT CTGATT CTGATT CTG-TCAC
1 CTGATT CTGATT CTGATT CTGATT -CTGATT CTGATT CTGATT CTGAT--T
* * * *
72992990 CTAATT TTGATT CTGATT CTGATT TTG-TT ACTAATAT -TGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT -CTGAT-T CTGATT CTGATT
* *
72993038 CTG-TT ACTGATT CTGATT CTGATT CTG-TCA CTTAATT CTGATT CTGATT
1 CTGATT -CTGATT CTGATT CTGATT CTGAT-T C-TGATT CTGATT CTGATT
*
72993087 CTGATT CTGTTT CT
1 CTGATT CTGATT CT
72993101 CATTTTGGTT
Statistics
Matches: 123, Mismatches: 17, Indels: 28
0.73 0.10 0.17
Matches are distributed among these distances:
5 9 0.07
6 102 0.83
7 9 0.07
8 3 0.02
ACGTcount: A:0.18, C:0.16, G:0.14, T:0.51
Consensus pattern (6 bp):
CTGATT
Found at i:72993003 original size:31 final size:30
Alignment explanation
Indices: 72992936--72993040 Score: 123
Period size: 31 Copynumber: 3.7 Consensus size: 30
72992926 GAAGTTATTA
*
72992936 TAATACTGATTCTGATTCTGATTCTG----
1 TAATATTGATTCTGATTCTGATTCTGTCAC
72992962 T--TATTGATTCTGATTCTGATTCTGTCACC
1 TAATATTGATTCTGATTCTGATTCTGTCA-C
* * *
72992991 TAATTTTGATTCTGATTCTGATTTTGTTAC
1 TAATATTGATTCTGATTCTGATTCTGTCAC
72993021 TAATATTGATTCTGATTCTG
1 TAATATTGATTCTGATTCTG
72993041 TTACTGATTC
Statistics
Matches: 67, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
24 22 0.33
26 1 0.01
29 1 0.01
30 20 0.30
31 23 0.34
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.50
Consensus pattern (30 bp):
TAATATTGATTCTGATTCTGATTCTGTCAC
Found at i:72993037 original size:79 final size:79
Alignment explanation
Indices: 72992948--72993097 Score: 264
Period size: 79 Copynumber: 1.9 Consensus size: 79
72992938 ATACTGATTC
* *
72992948 TGATTCTGATTCTGTTATTGATTCTGATTCTGATTCTGTCACCTAATTTTGATTCTGATTCTGAT
1 TGATTCTGATTCTGTTACTGATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGAT
*
72993013 TTTGTTACTAATAT
66 TCTGTTACTAATAT
*
72993027 TGATTCTGATTCTGTTACTGATTCTGATTCTGATTCTGTCACTTAATTCTGATTCTGATTCTGAT
1 TGATTCTGATTCTGTTACTGATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGAT
72993092 TCTGTT
66 TCTGTT
72993098 TCTCATTTTG
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
79 67 1.00
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.51
Consensus pattern (79 bp):
TGATTCTGATTCTGTTACTGATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGAT
TCTGTTACTAATAT
Found at i:72993118 original size:79 final size:79
Alignment explanation
Indices: 72992956--72993137 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 79
72992946 TCTGATTCTG
* * *
72992956 ATTCTGTTATTGATTCTGATTCTGATTCTGTCACCTAATTTTGATTCTGATTCTGATTTTGTTAC
1 ATTCTGTTAATGATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTAC
**
72993021 TAATATTGATTCTG
66 TAATATTGATTCCA
* * *
72993035 ATTCTGTTACTGATTCTGATTCTGATTCTGTCACTTAATTCTGATTCTGATTCTGATTCTGTTTC
1 ATTCTGTTAATGATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTAC
* * *
72993100 TCATTTTGGTTCCA
66 TAATATTGATTCCA
* * *
72993114 ATTCTGATAATGTTTCTTATTCTG
1 ATTCTGTTAATGATTCTGATTCTG
72993138 TAATGGGCTA
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
79 89 1.00
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.52
Consensus pattern (79 bp):
ATTCTGTTAATGATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTAC
TAATATTGATTCCA
Found at i:73002156 original size:17 final size:17
Alignment explanation
Indices: 73002131--73002165 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
73002121 GGGACGTGTT
*
73002131 AGGTTTGAAACAATTTA
1 AGGTCTGAAACAATTTA
73002148 AGGTCTGAAACAATTTA
1 AGGTCTGAAACAATTTA
73002165 A
1 A
73002166 TCACACAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.43, C:0.09, G:0.17, T:0.31
Consensus pattern (17 bp):
AGGTCTGAAACAATTTA
Found at i:73004833 original size:46 final size:46
Alignment explanation
Indices: 73004766--73004943 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
73004756 GATATTTGGG
73004766 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA
* * * * *
73004812 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCA-TGAAATGTA-ACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACT--TATGGATGCGA-A
*
73004859 CATCTGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA
* * * *
73004905 C-GCCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CATCC-GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGG
73004944 GTGAGTTACA
Statistics
Matches: 110, Mismatches: 16, Indels: 12
0.80 0.12 0.09
Matches are distributed among these distances:
45 2 0.02
46 70 0.64
47 37 0.34
48 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA
Found at i:73004923 original size:93 final size:93
Alignment explanation
Indices: 73004764--73004935 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
73004754 CGGATATTTG
*
73004764 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACAGCCGAACTCGTTGAG
*
73004829 TTGAGTCTGAGTTCATGAAATGTAACTA
66 TTGAGTCCGAGTTCATGAAATGTAACTA
* *
73004857 GGCATCTGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAC-GCCTGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACAGCC-GAACTCGTTGA
73004921 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
73004936 GCTTATGGGT
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACAGCCGAACTCGTTGAG
TTGAGTCCGAGTTCATGAAATGTAACTA
Found at i:73007587 original size:21 final size:21
Alignment explanation
Indices: 73007562--73007604 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
73007552 AAATTCTCTT
73007562 TATTTTTTGGCATAATAACAA
1 TATTTTTTGGCATAATAACAA
73007583 TATTTTTTGGCATAATAACAA
1 TATTTTTTGGCATAATAACAA
73007604 T
1 T
73007605 CTCTCAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.44
Consensus pattern (21 bp):
TATTTTTTGGCATAATAACAA
Found at i:73010963 original size:20 final size:17
Alignment explanation
Indices: 73010929--73010974 Score: 56
Period size: 20 Copynumber: 2.5 Consensus size: 17
73010919 TTCATATCTA
73010929 TTATTGAAAATAAAATT
1 TTATTGAAAATAAAATT
73010946 TTATTGAAATTATGAAAATT
1 TTATTGAAA--AT-AAAATT
*
73010966 TAATTGAAA
1 TTATTGAAA
73010975 CGTTCGGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 9 0.36
19 2 0.08
20 14 0.56
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (17 bp):
TTATTGAAAATAAAATT
Found at i:73012803 original size:26 final size:25
Alignment explanation
Indices: 73012761--73012853 Score: 86
Period size: 26 Copynumber: 3.6 Consensus size: 25
73012751 GCACACCACA
*
73012761 GCTCTTATGAG-TGTCCTG-TTATTTG
1 GCTCTTATGAGCT-TCCTGATTA-TAG
73012786 GCTCTTCATGAGCTTCCTGATTATAG
1 GCTCTT-ATGAGCTTCCTGATTATAG
*
73012812 GCTCTTTGTGAGCTTCCTGATTA-ATG
1 GCTC-TTATGAGCTTCCTGATTATA-G
73012838 GCTCTCTA-GAGCTTCC
1 GCTCT-TATGAGCTTCC
73012854 CGATATTGGC
Statistics
Matches: 59, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
25 16 0.27
26 37 0.63
27 6 0.10
ACGTcount: A:0.15, C:0.23, G:0.22, T:0.41
Consensus pattern (25 bp):
GCTCTTATGAGCTTCCTGATTATAG
Found at i:73016674 original size:43 final size:43
Alignment explanation
Indices: 73016612--73016699 Score: 149
Period size: 43 Copynumber: 2.0 Consensus size: 43
73016602 GGCAGTGTTT
73016612 ACACACCTTGTTGCAAAAGAGCGCAAATTTCCACGAACACCAA
1 ACACACCTTGTTGCAAAAGAGCGCAAATTTCCACGAACACCAA
* * *
73016655 ACACACCTTGTTGCTAAAGAGTGCAAATTTCTACGAACACCAA
1 ACACACCTTGTTGCAAAAGAGCGCAAATTTCCACGAACACCAA
73016698 AC
1 AC
73016700 CTAGATTCAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.39, C:0.28, G:0.14, T:0.19
Consensus pattern (43 bp):
ACACACCTTGTTGCAAAAGAGCGCAAATTTCCACGAACACCAA
Found at i:73018243 original size:26 final size:25
Alignment explanation
Indices: 73018204--73018259 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 25
73018194 CACCAAAGTA
*
73018204 CCTTAACTAGTGGGATAGACTTCTT
1 CCTTAAATAGTGGGATAGACTTCTT
73018229 CCTTAAATCAGTGGGATAGACTTCTT
1 CCTTAAAT-AGTGGGATAGACTTCTT
73018255 CCTTA
1 CCTTA
73018260 GTACTTTTAC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 7 0.24
26 22 0.76
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (25 bp):
CCTTAAATAGTGGGATAGACTTCTT
Found at i:73026828 original size:15 final size:15
Alignment explanation
Indices: 73026808--73026838 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
73026798 TGCAATGGAG
73026808 GAAACTGGGAGTGGT
1 GAAACTGGGAGTGGT
73026823 GAAACTGGGAGTGGT
1 GAAACTGGGAGTGGT
73026838 G
1 G
73026839 GGGTCGACGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.06, G:0.48, T:0.19
Consensus pattern (15 bp):
GAAACTGGGAGTGGT
Found at i:73035068 original size:17 final size:18
Alignment explanation
Indices: 73035046--73035081 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
73035036 TTTACCGCTG
73035046 TGAGGCCCACAC-GTCCA
1 TGAGGCCCACACTGTCCA
*
73035063 TGAGGCCTACACTGTCCA
1 TGAGGCCCACACTGTCCA
73035081 T
1 T
73035082 TTCGGCCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.22, C:0.36, G:0.22, T:0.19
Consensus pattern (18 bp):
TGAGGCCCACACTGTCCA
Found at i:73041835 original size:13 final size:13
Alignment explanation
Indices: 73041817--73041904 Score: 77
Period size: 13 Copynumber: 6.7 Consensus size: 13
73041807 TAAATGTGTA
73041817 ATATGAAATGGTT
1 ATATGAAATGGTT
* **
73041830 ATATGAGACAGTT
1 ATATGAAATGGTT
*
73041843 ATACGAAATGGTT
1 ATATGAAATGGTT
* **
73041856 ATATAAAATGAAT
1 ATATGAAATGGTT
*
73041869 ATATGAAATGATT
1 ATATGAAATGGTT
* *
73041882 TTATGAATTGGTT
1 ATATGAAATGGTT
73041895 ATATAGAAAT
1 ATAT-GAAAT
73041905 AATTATAAAG
Statistics
Matches: 56, Mismatches: 18, Indels: 1
0.75 0.24 0.01
Matches are distributed among these distances:
13 52 0.93
14 4 0.07
ACGTcount: A:0.43, C:0.02, G:0.18, T:0.36
Consensus pattern (13 bp):
ATATGAAATGGTT
Found at i:73045402 original size:14 final size:14
Alignment explanation
Indices: 73045379--73045418 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
73045369 TTCAAAGGTC
73045379 ACACGCCCGTGTGA
1 ACACGCCCGTGTGA
*
73045393 ACACGTCCGTGTGA
1 ACACGCCCGTGTGA
*
73045407 ACA-GGCCGTGTG
1 ACACGCCCGTGTG
73045419 CCTCACACGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 8 0.33
14 16 0.67
ACGTcount: A:0.20, C:0.30, G:0.33, T:0.17
Consensus pattern (14 bp):
ACACGCCCGTGTGA
Found at i:73048625 original size:710 final size:710
Alignment explanation
Indices: 73047635--73049062 Score: 2829
Period size: 710 Copynumber: 2.0 Consensus size: 710
73047625 AAATTCGGCA
73047635 ACACACATACCAAACTATTTTAGCCGAATTCTCCATAACACTTAAACTAAAATATGCACATTAAA
1 ACAC-CATACCAAACTATTTTAGCCGAATTCTCCATAACACTTAAACTAAAATATGCACATTAAA
73047700 CTTATTATATTTCCATTATGCCTTTCACTCCTAAAACATAAAAATATCAATCTTATTCCTTCTTC
65 CTTATTATATTTCCATTATGCCTTTCACTCCTAAAACATAAAAATATCAATCTTATTCCTTCTTC
73047765 CATGTCTCGGTCAATTACTCAAATTACCTCATAAACATGAATTTTTGCATTTTAACTTATCTATC
130 CATGTCTCGGTCAATTACTCAAATTACCTCATAAACATGAATTTTTGCATTTTAACTTATCTATC
73047830 ATGACTCGTTCGGCCTTAACATTGAACCATTTCTCATTCAAGGAAATAACAAATAAAATGAACAT
195 ATGACTCGTTCGGCCTTAACATTGAACCATTTCTCATTCAAGGAAATAACAAATAAAATGAACAT
73047895 TCCATTTAAACCCCATATGGAAAAATGCACAAAGTATTACCCAACTAATAATTCAACAAGTTCAA
260 TCCATTTAAACCCCATATGGAAAAATGCACAAAGTATTACCCAACTAATAATTCAACAAGTTCAA
73047960 CCTCATTCTAACATCTACTTATTCAATACAACATGAAAACAACCTCTAATTCTAACACCTTGATA
325 CCTCATTCTAACATCTACTTATTCAATACAACATGAAAACAACCTCTAATTCTAACACCTTGATA
73048025 CACGGCTTAGTGCCCAAACCACCATAGAAGTTTGATTTTCTTGACATTGCCAAAAATGCATTTAA
390 CACGGCTTAGTGCCCAAACCACCATAGAAGTTTGATTTTCTTGACATTGCCAAAAATGCATTTAA
73048090 CAATTAACTTAAACATATAAAAAGATTTAAACAACACTTCAAAACTTACCTCCAACTAGCAAAAG
455 CAATTAACTTAAACATATAAAAAGATTTAAACAACACTTCAAAACTTACCTCCAACTAGCAAAAG
*
73048155 AAGGTGCCAAATTGCCTTAGTGTAAATTTCCCTTTTTCTTTCCTTTTGTTTCGGTTTTGCAAGAA
520 AAGGTGCCAAATTGCCGTAGTGTAAATTTCCCTTTTTCTTTCCTTTTGTTTCGGTTTTGCAAGAA
73048220 GAAAAAGATGAACACTCTCTTCCAATTTCTTCTTTTATTCATCTTATTATTATTAATTCATTTTA
585 GAAAAAGATGAACACTCTCTTCCAATTTCTTCTTTTATTCATCTTATTATTATTAATTCATTTTA
73048285 TTTAGAATATTTTAATCATTTGTCAACATAATACTATAATTAATTTAAACTTAGTGGAGGG
650 TTTAGAATATTTTAATCATTTGTCAACATAATACTATAATTAATTTAAACTTAGTGGAGGG
73048346 ACACCATACCAAACTATTTTAGCCGAATTCTCCATAACACTTAAACTAAAATATGCACATTAAAC
1 ACACCATACCAAACTATTTTAGCCGAATTCTCCATAACACTTAAACTAAAATATGCACATTAAAC
73048411 TTATTATATTTCCATTATGCCTTTCACTCCTAAAACATAAAAATATCAATCTTATTCCTTCTTCC
66 TTATTATATTTCCATTATGCCTTTCACTCCTAAAACATAAAAATATCAATCTTATTCCTTCTTCC
73048476 ATGTCTCGGTCAATTACTCAAATTACCTCATAAACATGAATTTTTGCATTTTAACTTATCTATCA
131 ATGTCTCGGTCAATTACTCAAATTACCTCATAAACATGAATTTTTGCATTTTAACTTATCTATCA
73048541 TGACTCGTTCGGCCTTAACATTGAACCATTTCTCATTCAAGGAAATAACAAATAAAATGAACATT
196 TGACTCGTTCGGCCTTAACATTGAACCATTTCTCATTCAAGGAAATAACAAATAAAATGAACATT
73048606 CCATTTAAACCCCATATGGAAAAATGCACAAAGTATTACCCAACTAATAATTCAACAAGTTCAAC
261 CCATTTAAACCCCATATGGAAAAATGCACAAAGTATTACCCAACTAATAATTCAACAAGTTCAAC
73048671 CTCATTCTAACATCTACTTATTCAATACAACATGAAAACAACCTCTAATTCTAACACCTTGATAC
326 CTCATTCTAACATCTACTTATTCAATACAACATGAAAACAACCTCTAATTCTAACACCTTGATAC
73048736 ACGGCTTAGTGCCCAAACCACCATAGAAGTTTGATTTTCTTGACATTGCCAAAAATGCATTTAAC
391 ACGGCTTAGTGCCCAAACCACCATAGAAGTTTGATTTTCTTGACATTGCCAAAAATGCATTTAAC
73048801 AATTAACTTAAACATATAAAAAGATTTAAACAACACTTCAAAACTTACCTCCAACTAGCAAAAGA
456 AATTAACTTAAACATATAAAAAGATTTAAACAACACTTCAAAACTTACCTCCAACTAGCAAAAGA
*
73048866 AGGTGCCAAATTGCCGTAGTGTAAATTTCCCTTTTTCTTTCCTTTTGTTTCGGTTTTGCAATAAG
521 AGGTGCCAAATTGCCGTAGTGTAAATTTCCCTTTTTCTTTCCTTTTGTTTCGGTTTTGCAAGAAG
73048931 AAAAAGATGAACACTCTCTTCCAATTTCTTCTTTTATTCATCTTATTATTATTAATTCATTTTAT
586 AAAAAGATGAACACTCTCTTCCAATTTCTTCTTTTATTCATCTTATTATTATTAATTCATTTTAT
73048996 TTAGAATATTTTAATCATTTGTCAACATAATACTATAATTAATTTAAACTTAGTGGAGGG
651 TTAGAATATTTTAATCATTTGTCAACATAATACTATAATTAATTTAAACTTAGTGGAGGG
73049056 ACACCAT
1 ACACCAT
73049063 TACTTGGCCG
Statistics
Matches: 715, Mismatches: 2, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
710 711 0.99
711 4 0.01
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.34
Consensus pattern (710 bp):
ACACCATACCAAACTATTTTAGCCGAATTCTCCATAACACTTAAACTAAAATATGCACATTAAAC
TTATTATATTTCCATTATGCCTTTCACTCCTAAAACATAAAAATATCAATCTTATTCCTTCTTCC
ATGTCTCGGTCAATTACTCAAATTACCTCATAAACATGAATTTTTGCATTTTAACTTATCTATCA
TGACTCGTTCGGCCTTAACATTGAACCATTTCTCATTCAAGGAAATAACAAATAAAATGAACATT
CCATTTAAACCCCATATGGAAAAATGCACAAAGTATTACCCAACTAATAATTCAACAAGTTCAAC
CTCATTCTAACATCTACTTATTCAATACAACATGAAAACAACCTCTAATTCTAACACCTTGATAC
ACGGCTTAGTGCCCAAACCACCATAGAAGTTTGATTTTCTTGACATTGCCAAAAATGCATTTAAC
AATTAACTTAAACATATAAAAAGATTTAAACAACACTTCAAAACTTACCTCCAACTAGCAAAAGA
AGGTGCCAAATTGCCGTAGTGTAAATTTCCCTTTTTCTTTCCTTTTGTTTCGGTTTTGCAAGAAG
AAAAAGATGAACACTCTCTTCCAATTTCTTCTTTTATTCATCTTATTATTATTAATTCATTTTAT
TTAGAATATTTTAATCATTTGTCAACATAATACTATAATTAATTTAAACTTAGTGGAGGG
Found at i:73050152 original size:43 final size:42
Alignment explanation
Indices: 73050105--73050269 Score: 140
Period size: 42 Copynumber: 3.9 Consensus size: 42
73050095 AACATATACA
* *
73050105 ATGCCAACGTCCAAGACGTGGTCTTACATGTAATCAAACATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAA-ATTG
* * *
73050148 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATC-AGATACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCAAAAT-TG
* * * * *
73050190 ATGTCGATGTCCCAGACATGGTCTTACACGTAAAAT-AGAATTTG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGT--AATCA-AAATTG
*
73050234 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCA
73050270 CATAACGAAA
Statistics
Matches: 95, Mismatches: 17, Indels: 20
0.72 0.13 0.15
Matches are distributed among these distances:
41 2 0.02
42 31 0.33
43 29 0.31
44 31 0.33
45 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAAATTG
Found at i:73050213 original size:42 final size:43
Alignment explanation
Indices: 73050100--73050269 Score: 148
Period size: 43 Copynumber: 4.0 Consensus size: 43
73050090 CAGAGAACAT
* * * * * *
73050100 ATACAATGCCAACGTCCAAGACGTGGTCTTACATGTAATCA-A
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACGAAATCAGA
* * * *
73050142 ACATTGATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAG-
1 ATA-CGATGCCAATGTCCCAGACATGGTCTTACACGAAATCAGA
* *
73050185 ATACGATGTCGATGTCCCAGACATGGTCTTACACGTAAAAT-AGA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACG--AAATCAGA
** * *
73050229 ATTTGATGCCAACGTCCCAGACGTGGTCTTACACGAAATCA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACGAAATCA
73050270 CATAACGAAA
Statistics
Matches: 100, Mismatches: 22, Indels: 11
0.75 0.17 0.08
Matches are distributed among these distances:
42 33 0.33
43 34 0.34
44 33 0.33
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (43 bp):
ATACGATGCCAATGTCCCAGACATGGTCTTACACGAAATCAGA
Found at i:73053981 original size:27 final size:27
Alignment explanation
Indices: 73053951--73054095 Score: 116
Period size: 27 Copynumber: 5.4 Consensus size: 27
73053941 CTGGTGGACC
* * *
73053951 ATCTCGTGTTCAGTGTCCCATTAGATT
1 ATCTCGTGTTTAGTGTCCCATCAGACT
* *
73053978 ATCTCGTGTTTAATGTCCTATCAGACT
1 ATCTCGTGTTTAGTGTCCCATCAGACT
*
73054005 ATCTCGTGTTTAGTGTCCCGTCA-ACT
1 ATCTCGTGTTTAGTGTCCCATCAGACT
* * * ** *
73054031 ATCT-ATGTTAAATGTCCTGGT-GGACT
1 ATCTCGTGTTTAGTGTCC-CATCAGACT
* * **
73054057 ATCTCGTGTTTAGTGTCTCATTAGAAA
1 ATCTCGTGTTTAGTGTCCCATCAGACT
73054084 ATCTCGTGTTTA
1 ATCTCGTGTTTA
73054096 ATATTTTGGT
Statistics
Matches: 92, Mismatches: 22, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
25 10 0.11
26 17 0.18
27 65 0.71
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.41
Consensus pattern (27 bp):
ATCTCGTGTTTAGTGTCCCATCAGACT
Found at i:73054062 original size:52 final size:54
Alignment explanation
Indices: 73053939--73054073 Score: 159
Period size: 52 Copynumber: 2.5 Consensus size: 54
73053929 TTGTTTACGA
* * * * * *
73053939 TCCTGGTGGACCATCTCGTGTTCAGTGTCCCATTAGATTATCTCGTGTTTAATG
1 TCCTGGTGGACTATCTCGTGTTTAGTGTCCCATCAGACTATCTCATGTTAAATG
* * *
73053993 TCCT-ATCAGACTATCTCGTGTTTAGTGTCCCGTCA-ACTATCT-ATGTTAAATG
1 TCCTGGT-GGACTATCTCGTGTTTAGTGTCCCATCAGACTATCTCATGTTAAATG
73054045 TCCTGGTGGACTATCTCGTGTTTAGTGTC
1 TCCTGGTGGACTATCTCGTGTTTAGTGTC
73054074 TCATTAGAAA
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
52 33 0.49
53 8 0.12
54 27 0.40
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.39
Consensus pattern (54 bp):
TCCTGGTGGACTATCTCGTGTTTAGTGTCCCATCAGACTATCTCATGTTAAATG
Found at i:73056592 original size:18 final size:18
Alignment explanation
Indices: 73056569--73056603 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
73056559 AGTTGGCCAC
*
73056569 TTTAGAGACAAATAGAAA
1 TTTAGAAACAAATAGAAA
73056587 TTTAGAAACAAATAGAA
1 TTTAGAAACAAATAGAA
73056604 CTCTCCATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.57, C:0.06, G:0.14, T:0.23
Consensus pattern (18 bp):
TTTAGAAACAAATAGAAA
Found at i:73057706 original size:27 final size:27
Alignment explanation
Indices: 73057670--73057908 Score: 273
Period size: 27 Copynumber: 8.9 Consensus size: 27
73057660 ATTATCAAAG
* *
73057670 TACCCCCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
73057697 TATCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
73057724 TACCGTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * *
73057751 TACCCTCGATTTACAAAATTATCTTTT
1 TACCCTCGATTTATAGAATTACCATTT
** *
73057778 TACCCTTAATTTATAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
73057805 TACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
73057832 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
73057859 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
73057886 TACCCTTGGTTTA-AAAATTACCA
1 TACCCTCGATTTATAGAATTACCA
73057909 AAATACTCCT
Statistics
Matches: 181, Mismatches: 31, Indels: 1
0.85 0.15 0.00
Matches are distributed among these distances:
26 7 0.04
27 174 0.96
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:73057931 original size:27 final size:27
Alignment explanation
Indices: 73057886--73058014 Score: 170
Period size: 27 Copynumber: 4.8 Consensus size: 27
73057876 ATTATCGTTT
* *
73057886 TACCCTTGGTTT-AAAAATTACCAAAA
1 TACCCCTGGTTTGTAAAATTACCAAAA
* *
73057912 TACTCCTGGTTTGTAAAATTACTAAAA
1 TACCCCTGGTTTGTAAAATTACCAAAA
* *
73057939 TACCCTTGGTTTATAAAATTACCAAAA
1 TACCCCTGGTTTGTAAAATTACCAAAA
*
73057966 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCCTGGTTTGTAAAATTACCAAAA
*
73057993 TACCCCTGATTTGTGAAAATTA
1 TACCCCTGGTTTGT-AAAATTA
73058015 TTGAAATACC
Statistics
Matches: 88, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
26 10 0.11
27 71 0.81
28 7 0.08
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCCTGGTTTGTAAAATTACCAAAA
Found at i:73057978 original size:54 final size:53
Alignment explanation
Indices: 73057886--73057997 Score: 188
Period size: 54 Copynumber: 2.1 Consensus size: 53
73057876 ATTATCGTTT
* * *
73057886 TACCCTTGGTTTAAAAATTACCAAAATACTCCTGGTTTGTAAAATTACTAAAA
1 TACCCTTGGTTTAAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
73057939 TACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTA-AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
73057993 TACCC
1 TACCC
73057998 CTGATTTGTG
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
53 13 0.24
54 42 0.76
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (53 bp):
TACCCTTGGTTTAAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
Found at i:73058038 original size:82 final size:81
Alignment explanation
Indices: 73057899--73058078 Score: 209
Period size: 82 Copynumber: 2.2 Consensus size: 81
73057889 CCTTGGTTTA
* * ***
73057899 AAAATTACCAAAATACTCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAA
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTTGACCTATAAAATTACCAA
*
73057964 AATACCCCTAG-TTTGT
66 AATA-CCCTAGACTTGT
* * * ***
73057980 AAAATTACCAAAATACCCCTGATTTGTGAAAATTATTGAAATACCCTTGACCTGTAAAATTATTG
1 AAAATTACCAAAATACCCCTGATTTGT-AAAATTACTAAAATACCCTTGACCTATAAAATTACCA
*
73058045 AAATACCCTCGACTTGT
65 AAATACCCTAGACTTGT
*
73058062 AAAATTACCAAAGTACC
1 AAAATTACCAAAATACC
73058079 ATTGATTTAC
Statistics
Matches: 83, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 30 0.36
82 53 0.64
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.31
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTTGACCTATAAAATTACCAA
AATACCCTAGACTTGT
Found at i:73058078 original size:27 final size:27
Alignment explanation
Indices: 73057899--73058134 Score: 154
Period size: 27 Copynumber: 8.7 Consensus size: 27
73057889 CCTTGGTTTA
*
73057899 AAAATTACCAAAATACTCCT-GGTTTGT
1 AAAATTACCAAAATAC-CCTCGATTTGT
* * * *
73057926 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCTCGATTTGT
*
73057953 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTGT
73057980 AAAATTACCAAAATACCC-CTGATTTGT
1 AAAATTACCAAAATACCCTC-GATTTGT
*** * **
73058007 GAAAATTATTGAAATACCCTTGACCTGT
1 -AAAATTACCAAAATACCCTCGATTTGT
*** *
73058035 AAAATTATTGAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCTCGATTTGT
* * * **
73058062 AAAATTACCAAAGTACCATTGATTTAC
1 AAAATTACCAAAATACCCTCGATTTGT
* * *** **
73058089 AGAATTATCATTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTGT
*
73058116 AAAATTACCGAAATACCCT
1 AAAATTACCAAAATACCCT
73058135 TGTAGGGTAG
Statistics
Matches: 166, Mismatches: 38, Indels: 10
0.78 0.18 0.05
Matches are distributed among these distances:
26 3 0.02
27 142 0.86
28 21 0.13
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTTGT
Found at i:73058229 original size:26 final size:27
Alignment explanation
Indices: 73058116--73058231 Score: 146
Period size: 27 Copynumber: 4.3 Consensus size: 27
73058106 CTCGATTTAC
*
73058116 AAAATTACCGAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
*
73058143 AGAAA-TGCCGAAATACCCCTGTAGGGT
1 A-AAATTACCGAAATACCCCTGTAGGGT
*
73058170 AGAATTACCGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
* * * *
73058197 AGAATTACCGATATA-CCTTGTGGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
73058223 AAAATTACC
1 AAAATTACC
73058232 ATTTTGCCCC
Statistics
Matches: 79, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
26 19 0.24
27 57 0.72
28 3 0.04
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
AAAATTACCGAAATACCCCTGTAGGGT
Found at i:73058710 original size:22 final size:22
Alignment explanation
Indices: 73058658--73058722 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
73058648 TTAAAGCCTT
* *
73058658 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
73058680 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
73058702 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
73058723 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:73058919 original size:26 final size:27
Alignment explanation
Indices: 73058881--73058954 Score: 91
Period size: 27 Copynumber: 2.8 Consensus size: 27
73058871 ATTATGTTAA
*
73058881 GTGGCT-TTGCCACATTATCTGT-TCTG
1 GTGGCTCTT-CCACAATATCTGTATCTG
73058907 GTGGCTCTTCCACAATATCTGTATCTG
1 GTGGCTCTTCCACAATATCTGTATCTG
*
73058934 GTGACTCTGT-CACAATATCTG
1 GTGGCTCT-TCCACAATATCTG
73058955 ATAACTGAGC
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
26 18 0.42
27 24 0.56
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.38
Consensus pattern (27 bp):
GTGGCTCTTCCACAATATCTGTATCTG
Found at i:73059124 original size:19 final size:19
Alignment explanation
Indices: 73059102--73059159 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
73059092 TTCTGATTTT
73059102 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
73059121 TGATTCTG--A--T--T-T
1 TGATTCTGTTACCTGATAC
73059133 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
73059152 TGATTCTG
1 TGATTCTG
73059160 ATTCTGATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 8 0.27
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 16 0.53
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:73059129 original size:6 final size:6
Alignment explanation
Indices: 73059091--73059210 Score: 86
Period size: 6 Copynumber: 19.3 Consensus size: 6
73059081 TTGCATTCAC
* * *
73059091 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
73059141 -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
73059191 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
73059211 AATGTTTCTT
Statistics
Matches: 90, Mismatches: 12, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
5 6 0.07
6 67 0.74
7 14 0.16
8 3 0.03
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:73059186 original size:37 final size:31
Alignment explanation
Indices: 73059091--73059226 Score: 168
Period size: 31 Copynumber: 4.4 Consensus size: 31
73059081 TTGCATTCAC
*
73059091 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
*
73059123 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * *
73059154 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
*
73059185 ATTCTGATTCTGATTCTAGTT--CTGATAATG
1 ATTCTGATTCTGATTCT-GTTACCTGATACTG
* *
73059215 TTTCTTATTCTG
1 ATTCTGATTCTG
73059227 TAATGGGTTA
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
30 16 0.17
31 68 0.73
32 9 0.10
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:73059889 original size:15 final size:15
Alignment explanation
Indices: 73059855--73059889 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
73059845 TGTTACACTC
73059855 TTTTTCCTTTCTTTT
1 TTTTTCCTTTCTTTT
* *
73059870 ATTTTCTTTTCTTTT
1 TTTTTCCTTTCTTTT
73059885 TTTTT
1 TTTTT
73059890 AGCATCTCAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTCCTTTCTTTT
Found at i:73064420 original size:27 final size:27
Alignment explanation
Indices: 73064378--73064477 Score: 101
Period size: 27 Copynumber: 3.7 Consensus size: 27
73064368 CGTACCTGAA
* **
73064378 CCCTTATGAGAGAAAATGATTTTTTTG
1 CCCTTATGAGATAAAATGATAATTTTG
* *
73064405 CCCTTATGTGATAAAATGACAATTTTG
1 CCCTTATGAGATAAAATGATAATTTTG
* * **
73064432 CCCTTATGAGGTAAAATGCTGGTTTTG
1 CCCTTATGAGATAAAATGATAATTTTG
* *
73064459 CCCTTATAAGGTAAAATGA
1 CCCTTATGAGATAAAATGA
73064478 CTGCTTACCC
Statistics
Matches: 60, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (27 bp):
CCCTTATGAGATAAAATGATAATTTTG
Found at i:73064489 original size:27 final size:27
Alignment explanation
Indices: 73064432--73064489 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
73064422 GACAATTTTG
* * **
73064432 CCCTTATGAGGTAAAATGCTGGTTTTG
1 CCCTTATAAGGTAAAATGCTGGCTTAC
73064459 CCCTTATAAGGTAAAATGACT-GCTTAC
1 CCCTTATAAGGTAAAATG-CTGGCTTAC
73064486 CCCT
1 CCCT
73064490 ATGTGATGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 24 0.92
28 2 0.08
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (27 bp):
CCCTTATAAGGTAAAATGCTGGCTTAC
Found at i:73067811 original size:23 final size:23
Alignment explanation
Indices: 73067784--73067829 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
73067774 CATTTCTCCT
73067784 TTTGACAGTTGTAACTCATTTTA
1 TTTGACAGTTGTAACTCATTTTA
73067807 TTTGACAGTTGTAACTCATTTTA
1 TTTGACAGTTGTAACTCATTTTA
73067830 AATTGGTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.13, G:0.13, T:0.48
Consensus pattern (23 bp):
TTTGACAGTTGTAACTCATTTTA
Found at i:73071679 original size:13 final size:13
Alignment explanation
Indices: 73071661--73071685 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73071651 ACAAACGATA
73071661 AAATTTTCACACG
1 AAATTTTCACACG
73071674 AAATTTTCACAC
1 AAATTTTCACAC
73071686 ATATCATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:73096315 original size:30 final size:30
Alignment explanation
Indices: 73096279--73096342 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
73096269 TCTTTGACAG
* *
73096279 CTCATGCACCTTCATCAACAGTCCAATCTT
1 CTCATGCACCTTCATCAACACTACAATCTT
* *
73096309 CTCATGCACCTTCATCGACCCTACAATCTT
1 CTCATGCACCTTCATCAACACTACAATCTT
73096339 CTCA
1 CTCA
73096343 ACCTGTTTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.25, C:0.39, G:0.06, T:0.30
Consensus pattern (30 bp):
CTCATGCACCTTCATCAACACTACAATCTT
Found at i:73102084 original size:14 final size:14
Alignment explanation
Indices: 73102065--73102096 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
73102055 TTTTAATTAG
73102065 GCTACCCTTATATA
1 GCTACCCTTATATA
73102079 GCTACCCTTATATA
1 GCTACCCTTATATA
73102093 GCTA
1 GCTA
73102097 GACCTGATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.34
Consensus pattern (14 bp):
GCTACCCTTATATA
Found at i:73102246 original size:47 final size:47
Alignment explanation
Indices: 73102177--73102267 Score: 182
Period size: 47 Copynumber: 1.9 Consensus size: 47
73102167 AAATATGGAC
73102177 TCAACAAATGAGCTTGGACAAAATATAAGGTCTTTTTTTAAACGCGT
1 TCAACAAATGAGCTTGGACAAAATATAAGGTCTTTTTTTAAACGCGT
73102224 TCAACAAATGAGCTTGGACAAAATATAAGGTCTTTTTTTAAACG
1 TCAACAAATGAGCTTGGACAAAATATAAGGTCTTTTTTTAAACG
73102268 TGTTGAGCCT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.32
Consensus pattern (47 bp):
TCAACAAATGAGCTTGGACAAAATATAAGGTCTTTTTTTAAACGCGT
Found at i:73123654 original size:27 final size:29
Alignment explanation
Indices: 73123585--73123657 Score: 80
Period size: 32 Copynumber: 2.5 Consensus size: 29
73123575 GTCAATCATT
73123585 TCAATATCC-AACAAGCTTAAAACATAATAAA
1 TCAATA-CCTAACAAGCTTAAAAC--AATAAA
*
73123616 TCCAATATCTAACAAGCTTAAAAC-AT-AA
1 T-CAATACCTAACAAGCTTAAAACAATAAA
73123644 TCAATACCTAACAA
1 TCAATACCTAACAA
73123658 ATTCAAGACA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
27 12 0.32
28 3 0.08
29 2 0.05
31 2 0.05
32 19 0.50
ACGTcount: A:0.52, C:0.22, G:0.03, T:0.23
Consensus pattern (29 bp):
TCAATACCTAACAAGCTTAAAACAATAAA
Found at i:73130683 original size:13 final size:13
Alignment explanation
Indices: 73130636--73130685 Score: 55
Period size: 13 Copynumber: 3.7 Consensus size: 13
73130626 AGTTTACAAA
*
73130636 AAAAAATAAGATT
1 AAAAAATAAAATT
* *
73130649 AAAAATTAAATTTT
1 AAAAAATAAA-ATT
73130663 ACAAAAATAAAATT
1 A-AAAAATAAAATT
73130677 AAAAAATAA
1 AAAAAATAA
73130686 CTTTCGGGAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
13 16 0.53
14 6 0.20
15 8 0.27
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (13 bp):
AAAAAATAAAATT
Found at i:73140101 original size:59 final size:60
Alignment explanation
Indices: 73139997--73140110 Score: 158
Period size: 59 Copynumber: 1.9 Consensus size: 60
73139987 TTGAACAAAA
* *
73139997 AAAAAGATTAAGTACCAAATTAAATAAAAAGAGTCAAGTTCAAGTACCAAATTAAACTCC
1 AAAAAGATTAAATACCAAATTAAAGAAAAAGAGTCAAGTTCAAGTACCAAATTAAACTCC
* * * * *
73140057 AAAAAGATTAAATA-CTAATTTAAGAAAAAGTGTTAAGTTTAAGTACCAAATTAA
1 AAAAAGATTAAATACCAAATTAAAGAAAAAGAGTCAAGTTCAAGTACCAAATTAA
73140111 GAAAAAATGT
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
59 34 0.72
60 13 0.28
ACGTcount: A:0.54, C:0.11, G:0.11, T:0.25
Consensus pattern (60 bp):
AAAAAGATTAAATACCAAATTAAAGAAAAAGAGTCAAGTTCAAGTACCAAATTAAACTCC
Found at i:73142678 original size:5 final size:5
Alignment explanation
Indices: 73142668--73142744 Score: 136
Period size: 5 Copynumber: 15.4 Consensus size: 5
73142658 TACAACCTTG
73142668 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
* *
73142718 TAGTA TAGTA TAATA TAATA TAATA TA
1 TAATA TAATA TAATA TAATA TAATA TA
73142745 TACGAGAAAT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 70 1.00
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (5 bp):
TAATA
Found at i:73143419 original size:3 final size:3
Alignment explanation
Indices: 73143404--73143450 Score: 58
Period size: 3 Copynumber: 15.7 Consensus size: 3
73143394 CATAAATTAA
* * * *
73143404 AAG AAG GAG AAG AAG AAG AAA AAG AAA AAG AAA AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
73143451 AGGATCATAT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:73145182 original size:27 final size:27
Alignment explanation
Indices: 73145152--73145207 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
73145142 CCAGTGAAAG
73145152 TAATCAAAAGGGTTTCATAATGTTCAC
1 TAATCAAAAGGGTTTCATAATGTTCAC
73145179 TAATCAAAAGGGTTTCATAATGTTCAC
1 TAATCAAAAGGGTTTCATAATGTTCAC
73145206 TA
1 TA
73145208 TTTGAAGAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (27 bp):
TAATCAAAAGGGTTTCATAATGTTCAC
Found at i:73152941 original size:96 final size:96
Alignment explanation
Indices: 73152777--73153159 Score: 450
Period size: 96 Copynumber: 4.0 Consensus size: 96
73152767 GACAATTGAG
*
73152777 TGATATGTGTGA-TAGTGTAAGACCATGTCTGGGACATGGCATCAGTCACATTATGAGAGCCAGT
1 TGATATGTGT-ACTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCCAGT
**
73152841 GTAAGACCATATCTGGGACATGGCATCGGTGT
65 GTAAGACCATATCTGGGACATGGCATCGGCAT
* *
73152873 TGATATGTGTACTAGTGTAAGACCATGACTGGGACATGGCATC-GACCATATTATGAGAGCCAGT
1 TGATATGTGTACTAGTGTAAGACCATGTCTGGGACATGGCATCAG-CCACATTATGAGAGCCAGT
*
73152937 GTAAGACCATGTCTGGGACATGGCATCGGCAT
65 GTAAGACCATATCTGGGACATGGCATCGGCAT
* * * * *
73152969 TGATATGTGTGCTAGTGTAAGACCATG-CTTGGGGCATGGCATCAGCCACAGTATGAAAGCTAGT
1 TGATATGTGTACTAGTGTAAGACCATGTC-TGGGACATGGCATCAGCCACATTATGAGAGCCAGT
* * * * **
73153033 GTAAAATCATGTCTGGGACATGGTATTAGCAT
65 GTAAGACCATATCTGGGACATGGCATCGGCAT
** * ** * * * * *
73153065 TGAGGTGAGGGCTAATGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-CATGTGAGCCAGT
1 TGATATGTGTACTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCAC-ATTATGAGAGCCAGT
*
73153129 GTAAGACCATATCTAGGACATGGCATCGGCA
65 GTAAGACCATATCTGGGACATGGCATCGGCA
73153160 ATTTACCCTC
Statistics
Matches: 245, Mismatches: 36, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
95 3 0.01
96 239 0.98
97 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (96 bp):
TGATATGTGTACTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCCAGTG
TAAGACCATATCTGGGACATGGCATCGGCAT
Found at i:73153151 original size:144 final size:144
Alignment explanation
Indices: 73152792--73153156 Score: 373
Period size: 144 Copynumber: 2.5 Consensus size: 144
73152782 TGTGTGATAG
* * * *
73152792 TGTAAGACCATGTCTGGGACATGGCATCAGTCAC-ATTATGAGAGCCAGTGTAAGACCATATCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-TATGTGAGCCAGTGTAAGACCATATCTG
***** ** *
73152856 GGACATGGCATCGGTGTTGATATGTGTACTAGTGTAAGACCATGACTGGGACATGGCATCGACCA
65 GGACATGGCATCGCCACAGATATGTAAACTAGTGTAAAACCATGACTGGGACATGGCATCGACCA
* *
73152921 TATTATGAGAGCCAG
130 TATGATGAGAGCCAA
* * * * *
73152936 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCTAGTGTAAGACCAT-GCTTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAAGACCATATC-TG
* * * * * *
73153000 GGGCATGGCATCAGCCACAG-TATG-AAAGCTAGTGTAAAATCATGTCTGGGACATGGTAT-TAG
65 GGACATGGCATC-GCCACAGATATGTAAA-CTAGTGTAAAACCATGACTGGGACATGGCATCGAC
* *
73153062 CAT-TGAGGTGAGGGCTAA
128 CATATGA--TGAGAGCCAA
* *
73153080 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGAGCCAGTGTAAGACCATATCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAAGACCATATCTGG
73153145 GACATGGCATCG
66 GACATGGCATCG
73153157 GCAATTTACC
Statistics
Matches: 179, Mismatches: 35, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
142 2 0.01
143 7 0.04
144 166 0.93
145 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (144 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAAGACCATATCTGG
GACATGGCATCGCCACAGATATGTAAACTAGTGTAAAACCATGACTGGGACATGGCATCGACCAT
ATGATGAGAGCCAA
Found at i:73153156 original size:48 final size:48
Alignment explanation
Indices: 73152789--73153158 Score: 320
Period size: 48 Copynumber: 7.7 Consensus size: 48
73152779 ATATGTGTGA
* * *
73152789 TAGTGTAAGACCATGTCTGGGACATGGCATCAGTCAC-ATTATGAGAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-TATGAGAGC
* * ** * *
73152837 CAGTGTAAGACCATATCTGGGACATGGCATCGGTGTTGATATGTGTA-C
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGAG-AGC
* *
73152885 TAGTGTAAGACCATGACTGGGACATGGCATCGACCAT--ATTATGAGAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-TCGA-TATGAGAGC
* * * * *
73152933 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGAGAGC
* * * *
73152981 TAGTGTAAGACCATG-CTTGGGGCATGGCATCAGCCAC-AGTATGAAAGC
1 TAGTGTAAGACCATGTC-TGGGACATGGCATCGGCCTCGA-TATGAGAGC
* * * ** * * ** *
73153029 TAGTGTAAAATCATGTCTGGGACATGGTATTAGCATTGAGGTGAGGGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGAGAGC
* * *
73153077 TAATGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGAGAGC
* * *
73153125 CAGTGTAAGACCATATCTAGGACATGGCATCGGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGC
73153159 AATTTACCCT
Statistics
Matches: 254, Mismatches: 57, Indels: 22
0.76 0.17 0.07
Matches are distributed among these distances:
47 5 0.02
48 243 0.96
49 6 0.02
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (48 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGAGAGC
Found at i:73155303 original size:26 final size:25
Alignment explanation
Indices: 73155274--73155326 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
73155264 ATTATTCGGA
73155274 AAGCC-CTAGTGGTGATGTTATCTAGG
1 AAGCCTCTAGTGGTGA-GTTATCT-GG
* *
73155300 AAGCCTTTTGTGGTGAGTTATCTGG
1 AAGCCTCTAGTGGTGAGTTATCTGG
73155325 AA
1 AA
73155327 AATCTATATG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 4 0.17
26 12 0.50
27 8 0.33
ACGTcount: A:0.23, C:0.13, G:0.30, T:0.34
Consensus pattern (25 bp):
AAGCCTCTAGTGGTGAGTTATCTGG
Found at i:73163214 original size:16 final size:16
Alignment explanation
Indices: 73163183--73163219 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
73163173 ATGTGAAGAA
73163183 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
73163199 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
73163215 TATTA
1 TATTA
73163220 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:73163258 original size:16 final size:19
Alignment explanation
Indices: 73163233--73163288 Score: 55
Period size: 18 Copynumber: 2.9 Consensus size: 19
73163223 TAAAATTGAA
73163233 ATATTAAATAATTTATTAA-
1 ATATT-AATAATTTATTAAT
73163252 A-A-TAATAAATTATATTAATT
1 ATATTAAT-AATT-TATTAA-T
73163272 ATATTAATAATTTATTA
1 ATATTAATAATTTATTA
73163289 TATGACTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
16 3 0.10
17 5 0.16
18 7 0.23
19 1 0.03
20 6 0.19
21 5 0.16
22 4 0.13
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
ATATTAATAATTTATTAAT
Found at i:73166199 original size:45 final size:45
Alignment explanation
Indices: 73166135--73166249 Score: 144
Period size: 45 Copynumber: 2.6 Consensus size: 45
73166125 CCAATGGTTT
* *
73166135 GCAGAT-GAA-CTGCCAATGGCTATGGACACACAGTAAAAACACC
1 GCAGATGGAATCTGCCTATGGCTATGGACACACAGCAAAAACACC
* * *
73166178 GCAGATGGAATCTGCCTATGGCTGTGGATACACAGCAAAAACACT
1 GCAGATGGAATCTGCCTATGGCTATGGACACACAGCAAAAACACC
* * *
73166223 GTACATGGAATCCGCCTATGGCTATGG
1 GCAGATGGAATCTGCCTATGGCTATGG
73166250 GTACACAACA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 6 0.10
44 3 0.05
45 52 0.85
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.19
Consensus pattern (45 bp):
GCAGATGGAATCTGCCTATGGCTATGGACACACAGCAAAAACACC
Found at i:73166255 original size:45 final size:45
Alignment explanation
Indices: 73166150--73166262 Score: 145
Period size: 45 Copynumber: 2.5 Consensus size: 45
73166140 TGAACTGCCA
* * * *
73166150 ATGGCTATGGACACACAGTAAAAACACCGCAGATGGAATCTGCCT
1 ATGGCTATGGATACACAGCAAAAACACCGCACATGGAATCCGCCT
* * *
73166195 ATGGCTGTGGATACACAGCAAAAACACTGTACATGGAATCCGCCT
1 ATGGCTATGGATACACAGCAAAAACACCGCACATGGAATCCGCCT
* *
73166240 ATGGCTATGGGTACACAACAAAA
1 ATGGCTATGGATACACAGCAAAA
73166263 TAAAGCGAAT
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 58 1.00
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (45 bp):
ATGGCTATGGATACACAGCAAAAACACCGCACATGGAATCCGCCT
Found at i:73171643 original size:25 final size:25
Alignment explanation
Indices: 73171600--73171648 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
73171590 TGTAATAATA
*
73171600 TTGAAATATATAAATAAAGCTTTTG
1 TTGAAATATATAAATAAAGATTTTG
*
73171625 TTGAAGTA-ATAAATAAAAGATTTT
1 TTGAAATATATAAAT-AAAGATTTT
73171649 ATAAATGTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (25 bp):
TTGAAATATATAAATAAAGATTTTG
Found at i:73176637 original size:44 final size:44
Alignment explanation
Indices: 73176591--73177131 Score: 385
Period size: 44 Copynumber: 12.0 Consensus size: 44
73176581 GGATTATCGC
* ** ** *
73176591 TTCAATCTGCTCCACTGTAACTTCAGAAAGATAAGATTAATAGC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGT
* * ** * *
73176635 TTCAATCAGCTCTACTATAACTTCAGGAAAATAAGATTTGTAGT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGT
* * * *
73176679 TTCAATCTACTCCAATGCAATTTTAGGGAGATAAGATTTGTAGT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGT
* * * * *
73176723 TTCAATCTGCTCAACTACAACTTTAGGGAGATAAGATTCGTTGT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGT
* * ** * * *
73176767 TTC-ATCTCACTCTACTATATCTTCA-GGAGATAAGATTTATATT
1 TTCAATCT-GCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGT
* * * * *
73176810 TTCAATCTACTGCACTGCAAATTCAGGAAGATAAAATTTGTAGT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGT
* * * *
73176854 TTCAATCTGCTCAACTGCAACTTTAGGGAGATAAGATTCGTTGT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGT
* * * * *
73176898 TTC-ATCTCACTCTACTGCATCTTCAGGGAGAAAAGATTTATAGCT
1 TTCAATCT-GCTCCACTGCAACTTCAGGGAGATAAGATTTGTAG-T
* * *
73176943 TT-AATCTGCTCCACTACAATTTCAGGGAGATAAGATTTATAGCT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAG-T
* * * * **
73176987 TT-AATTTGCTCCATTGTAACTTCGGGGAGATAAGATTCGCCATGGTAAC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-----T-GTAGT
*
73177036 TTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCTATGGT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA--GT
* *
73177083 AACTTCAATCTGAC-CCACTGCAACTTTAGGG-GTATAAGATTTGCAGT
1 ---TTCAATCTG-CTCCACTGCAACTTCAGGGAG-ATAAGATTTGTAGT
73177130 TT
1 TT
73177132 TACCAATATG
Statistics
Matches: 392, Mismatches: 84, Indels: 42
0.76 0.16 0.08
Matches are distributed among these distances:
43 36 0.09
44 270 0.69
45 10 0.03
47 2 0.01
49 5 0.01
50 68 0.17
51 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (44 bp):
TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGT
Found at i:73176857 original size:131 final size:131
Alignment explanation
Indices: 73176591--73177025 Score: 498
Period size: 132 Copynumber: 3.3 Consensus size: 131
73176581 GGATTATCGC
* * * ** ** * * * *
73176591 TTCAATCTGCTCCACTGTAACTTCAGAAAGATAAGATTAATAGCTTCA-ATCAGCTCTACTATAA
1 TTCAATCTGCTCAACTGCAACTTTAGGGAGATAAGATTCGTTGTTTCATCTCA-CTCTACTATAT
* * * * *
73176655 CTTCAGGAAAATAAGATTTGTAGTTTCAATCTACTCCAATGCAATTTTAGGGAGATAAGATTTGT
65 CTTCAGG-AGATAAGATTTATACTTTCAATCTACTCCACTGCAATTTCAGGGAGATAAGATTTGT
73176720 AGT
129 AGT
*
73176723 TTCAATCTGCTCAACTACAACTTTAGGGAGATAAGATTCGTTGTTTCATCTCACTCTACTATATC
1 TTCAATCTGCTCAACTGCAACTTTAGGGAGATAAGATTCGTTGTTTCATCTCACTCTACTATATC
* * * * *
73176788 TTCAGGAGATAAGATTTATATTTTCAATCTACTGCACTGCAAATTCAGGAAGATAAAATTTGTAG
66 TTCAGGAGATAAGATTTATACTTTCAATCTACTCCACTGCAATTTCAGGGAGATAAGATTTGTAG
73176853 T
131 T
**
73176854 TTCAATCTGCTCAACTGCAACTTTAGGGAGATAAGATTCGTTGTTTCATCTCACTCTACTGCATC
1 TTCAATCTGCTCAACTGCAACTTTAGGGAGATAAGATTCGTTGTTTCATCTCACTCTACTATATC
* * * *
73176919 TTCAGGGAGAAAAGATTTATAGCTTT-AATCTGCTCCACTACAATTTCAGGGAGATAAGATTTAT
66 TTCA-GGAGATAAGATTTATA-CTTTCAATCTACTCCACTGCAATTTCAGGGAGATAAGATTTGT
73176983 AGCT
129 AG-T
* * * * **
73176987 TT-AATTTGCTCCATTGTAACTTCGGGGAGATAAGATTCG
1 TTCAATCTGCTCAACTGCAACTTTAGGGAGATAAGATTCG
73177026 CCATGGTAAC
Statistics
Matches: 260, Mismatches: 39, Indels: 8
0.85 0.13 0.03
Matches are distributed among these distances:
131 117 0.45
132 134 0.52
133 9 0.03
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.34
Consensus pattern (131 bp):
TTCAATCTGCTCAACTGCAACTTTAGGGAGATAAGATTCGTTGTTTCATCTCACTCTACTATATC
TTCAGGAGATAAGATTTATACTTTCAATCTACTCCACTGCAATTTCAGGGAGATAAGATTTGTAG
T
Found at i:73177124 original size:50 final size:50
Alignment explanation
Indices: 73176945--73177126 Score: 184
Period size: 50 Copynumber: 3.8 Consensus size: 50
73176935 TTATAGCTTT
* * *
73176945 AATCTGCTCCACTACAA-TTTCAGGGAGATAAGATTT---A---TAGCTTT
1 AATCTGCTCCACTGCAACTTT-AGGGAGATAAGATTTGCCATGGTAACTTC
* * * ** *
73176989 AATTTGCTCCATTGTAACTTCGGGGAGATAAGATTCGCCATGGTAACTTC
1 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCCATGGTAACTTC
*
73177039 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCTATGGTAACTTC
1 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCCATGGTAACTTC
73177089 AATCTGAC-CCACTGCAACTTTAGGG-GTATAAGATTTGC
1 AATCTG-CTCCACTGCAACTTTAGGGAG-ATAAGATTTGC
73177127 AGTTTTACCA
Statistics
Matches: 113, Mismatches: 16, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
44 26 0.23
45 2 0.02
47 1 0.01
49 1 0.01
50 82 0.73
51 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (50 bp):
AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCCATGGTAACTTC
Found at i:73185202 original size:18 final size:19
Alignment explanation
Indices: 73185167--73185202 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
73185157 ACTCTACTAA
73185167 AAAACAAATATCTTTACAT
1 AAAACAAATATCTTTACAT
*
73185186 AAAATAAATAT-TTTACA
1 AAAACAAATATCTTTACA
73185203 CATACAGCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAACAAATATCTTTACAT
Found at i:73189706 original size:45 final size:45
Alignment explanation
Indices: 73189643--73189729 Score: 115
Period size: 45 Copynumber: 1.9 Consensus size: 45
73189633 AATGAGTAAA
* *
73189643 AATATAATAATAATATAATTGCAGTAATAATGATAA-TAATAAAGT
1 AATATAATAATAATATAATAGCAATAATAAT-ATAAGTAATAAAGT
*
73189688 AATA-AATCATAATGATAATAGCAATAATAATATAAGTAATAA
1 AATATAATAATAAT-ATAATAGCAATAATAATATAAGTAATAA
73189730 TATAAGTAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
44 12 0.32
45 25 0.68
ACGTcount: A:0.57, C:0.03, G:0.08, T:0.31
Consensus pattern (45 bp):
AATATAATAATAATATAATAGCAATAATAATATAAGTAATAAAGT
Found at i:73189743 original size:10 final size:12
Alignment explanation
Indices: 73189637--73189738 Score: 61
Period size: 12 Copynumber: 8.4 Consensus size: 12
73189627 AAGAGTAATG
*
73189637 AGTAAAAATATA
1 AGTAATAATATA
73189649 A-TAATAATATA
1 AGTAATAATATA
* *
73189660 ATTGCAGTAATA-A
1 A--GTAATAATATA
*
73189673 TGATAATAATA-A
1 AG-TAATAATATA
73189685 AGTAATAAATCATA
1 AGTAAT-AAT-ATA
* *
73189699 A-TGATAATAGCA
1 AGTAATAATA-TA
73189711 A-TAATAATATA
1 AGTAATAATATA
73189722 AGTAATAATATA
1 AGTAATAATATA
73189734 AGTAA
1 AGTAA
73189739 ATATAGAGAG
Statistics
Matches: 70, Mismatches: 11, Indels: 18
0.71 0.11 0.18
Matches are distributed among these distances:
11 18 0.26
12 39 0.56
13 5 0.07
14 8 0.11
ACGTcount: A:0.58, C:0.03, G:0.09, T:0.30
Consensus pattern (12 bp):
AGTAATAATATA
Found at i:73190119 original size:26 final size:24
Alignment explanation
Indices: 73190067--73190132 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 24
73190057 ATGCATGTAT
* *
73190067 TAAAAATAA-TATTAATGTTTTAA
1 TAAAAATAATTATTAATATATTAA
73190090 -AAAAATAATTATTAATAATATTACA
1 TAAAAATAATTATTAAT-ATATTA-A
73190115 TAAAAATATATATATTAA
1 TAAAAATA-AT-TATTAA
73190133 AACTAATAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
22 8 0.23
23 7 0.20
24 4 0.11
25 1 0.03
26 7 0.20
27 2 0.06
28 6 0.17
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (24 bp):
TAAAAATAATTATTAATATATTAA
Found at i:73190265 original size:21 final size:20
Alignment explanation
Indices: 73190236--73190290 Score: 51
Period size: 21 Copynumber: 2.8 Consensus size: 20
73190226 GAATAGTACT
73190236 AATAA-TAATAAAAATAATA
1 AATAATTAATAAAAATAATA
***
73190255 GAATAATTAATTTTAATAATA
1 -AATAATTAATAAAAATAATA
73190276 AAGTAATTAA-AAAAA
1 AA-TAATTAATAAAAA
73190291 GGATCGAATC
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
20 9 0.33
21 18 0.67
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (20 bp):
AATAATTAATAAAAATAATA
Found at i:73191051 original size:21 final size:21
Alignment explanation
Indices: 73191026--73191068 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
73191016 TTCTTTTGTT
73191026 TTTGCTCTTTTATTTCTGAAA
1 TTTGCTCTTTTATTTCTGAAA
73191047 TTTGCTCTTTTATTTCTGAAA
1 TTTGCTCTTTTATTTCTGAAA
73191068 T
1 T
73191069 ACGCCTGTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.19, C:0.14, G:0.09, T:0.58
Consensus pattern (21 bp):
TTTGCTCTTTTATTTCTGAAA
Found at i:73192734 original size:522 final size:522
Alignment explanation
Indices: 73191744--73192788 Score: 1896
Period size: 522 Copynumber: 2.0 Consensus size: 522
73191734 TGCGCGGAAG
* * *
73191744 CGTGTGAAAGAGTAAAATTATTGTACTGAAAAATCACACTAAGTTCAATTCCCAGGAAAGAGAGG
1 CGTGTGAAAGAGTAAAAATATTGTACTGAAAAATCACACTAAATTCAATTCCCAGAAAAGAGAGG
* *
73191809 TAGATCACGAAAATCACTTAAATACCAAGTCTTTCCTAGTCAGAATATCCCTCTATCGTAATTTA
66 TAGATCACGAAAATCACTTAAATACCAAATCTTTCCTAGCCAGAATATCCCTCTATCGTAATTTA
73191874 ATAGCACAATAAATCACTACAATCACATTCACAAAATATGCAAAACAAATAATAAAGAACACCAG
131 ATAGCACAATAAATCACTACAATCACATTCACAAAATATGCAAAACAAATAATAAAGAACACCAG
73191939 AATTTTAACGAGGTTCAGCAAATTTTGCCTACGTCCTCGGGCACTACCAAATATATTTCACTCCA
196 AATTTTAACGAGGTTCAGCAAATTTTGCCTACGTCCTCGGGCACTACCAAATATATTTCACTCCA
73192004 AAAATTACAAGTGAAATTTACAAATAGAGAGAGAGAATAATGCCTTAAGTAGAGAATGGCAATTA
261 AAAATTACAAGTGAAATTTACAAATAGAGAGAGAGAATAATGCCTTAAGTAGAGAATGGCAATTA
73192069 TGGGATGAAGAAAGTAAGAAATGGTTAGGCCTATTTATAGTTGAGGTTCAAGGATCAACTTGCAA
326 TGGGATGAAGAAAGTAAGAAATGGTTAGGCCTATTTATAGTTGAGGTTCAAGGATCAACTTGCAA
73192134 TGTCCCTATACAATTAGGGACCAAAATTGCAATTATCCCATGCCAACTTTTAACCCAACTTGCCA
391 TGTCCCTATACAATTAGGGACCAAAATTGCAATTATCCCATGCCAACTTTTAACCCAACTTGCCA
73192199 ACCAATATTACTTTCTACTTTCGGTGCCCACCCCATTTGACTTTTCAAACAATG-GTGGGTTCCA
456 ACCAATATTACTTTCTACTTTC-GTGCCCACCCCATTTGACTTTTCAAACAATGAGTGGGTTCCA
73192263 ATA
520 ATA
*
73192266 CGTGTGAAAGAGTAAAAATATTGTATTGAAAAATCACACTAAATTCAATTCCCAGAAAAGAGAGG
1 CGTGTGAAAGAGTAAAAATATTGTACTGAAAAATCACACTAAATTCAATTCCCAGAAAAGAGAGG
*
73192331 TAGATCAC-AAAGATCATTTAAATACCAAATCTTTCCTAGCCAGAATATCCCTCTATCGTAATTT
66 TAGATCACGAAA-ATCACTTAAATACCAAATCTTTCCTAGCCAGAATATCCCTCTATCGTAATTT
*
73192395 AATAGCACAGTAAATCACTACAATCACATTCACAAAATATGCAAAACAAATAATAAAGAACACCA
130 AATAGCACAATAAATCACTACAATCACATTCACAAAATATGCAAAACAAATAATAAAGAACACCA
73192460 GAATTTTAACGAGGTTCAGCAAATTTTGCCTACGTCCTCGGGCACTACCAAATATATTTCACTCC
195 GAATTTTAACGAGGTTCAGCAAATTTTGCCTACGTCCTCGGGCACTACCAAATATATTTCACTCC
* *
73192525 AAAAATTACAAGTGAAATTTGCAAATAGGGAGAGAGAATAATGCCTTAAGTAGAGAATGGCAATT
260 AAAAATTACAAGTGAAATTTACAAATAGAGAGAGAGAATAATGCCTTAAGTAGAGAATGGCAATT
73192590 ATGGGATGAAGAAAGTAAGAAATGGTTAGGCCTATTTATAGTTGAGGTTCAAGGATCAACTTGCA
325 ATGGGATGAAGAAAGTAAGAAATGGTTAGGCCTATTTATAGTTGAGGTTCAAGGATCAACTTGCA
* **
73192655 ATGTCCCTATACAATTAGGGACCAAAATTGTAATTATCCCATGCCAACTTTTAACCCATTTTGCC
390 ATGTCCCTATACAATTAGGGACCAAAATTGCAATTATCCCATGCCAACTTTTAACCCAACTTGCC
* *** *
73192720 AACCAATCTTACTTTCTACTTTCGTGCCCACCTTTTTTTACTTTTCAAACAATGAGTGGGTTCCA
455 AACCAATATTACTTTCTACTTTCGTGCCCACCCCATTTGACTTTTCAAACAATGAGTGGGTTCCA
73192785 ATA
520 ATA
73192788 C
1 C
73192789 TAATCATGGT
Statistics
Matches: 503, Mismatches: 18, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
521 30 0.06
522 473 0.94
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (522 bp):
CGTGTGAAAGAGTAAAAATATTGTACTGAAAAATCACACTAAATTCAATTCCCAGAAAAGAGAGG
TAGATCACGAAAATCACTTAAATACCAAATCTTTCCTAGCCAGAATATCCCTCTATCGTAATTTA
ATAGCACAATAAATCACTACAATCACATTCACAAAATATGCAAAACAAATAATAAAGAACACCAG
AATTTTAACGAGGTTCAGCAAATTTTGCCTACGTCCTCGGGCACTACCAAATATATTTCACTCCA
AAAATTACAAGTGAAATTTACAAATAGAGAGAGAGAATAATGCCTTAAGTAGAGAATGGCAATTA
TGGGATGAAGAAAGTAAGAAATGGTTAGGCCTATTTATAGTTGAGGTTCAAGGATCAACTTGCAA
TGTCCCTATACAATTAGGGACCAAAATTGCAATTATCCCATGCCAACTTTTAACCCAACTTGCCA
ACCAATATTACTTTCTACTTTCGTGCCCACCCCATTTGACTTTTCAAACAATGAGTGGGTTCCAA
TA
Found at i:73195754 original size:19 final size:19
Alignment explanation
Indices: 73195730--73195770 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
73195720 CGAATTACTT
73195730 ATTCGAGTTGACTAGAATA
1 ATTCGAGTTGACTAGAATA
73195749 ATTCGAGTTGACTAGAATA
1 ATTCGAGTTGACTAGAATA
73195768 ATT
1 ATT
73195771 TAATTCGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.34
Consensus pattern (19 bp):
ATTCGAGTTGACTAGAATA
Found at i:73196648 original size:30 final size:30
Alignment explanation
Indices: 73196602--73196725 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
73196592 TTTTATTATG
*
73196602 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
73196633 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
73196663 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
73196693 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
73196723 CCA
1 CCA
73196726 TAAATATGGA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 81 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:73196657 original size:15 final size:15
Alignment explanation
Indices: 73196612--73196719 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
73196602 CCAATATCTC
73196612 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
73196627 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
73196642 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
73196657 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
73196672 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
73196687 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
73196702 GATACCCATATCTTT
1 GATACCCATATCTTT
73196717 GAT
1 GAT
73196720 TTTCCATAAA
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:73200096 original size:72 final size:72
Alignment explanation
Indices: 73199975--73200244 Score: 366
Period size: 72 Copynumber: 3.8 Consensus size: 72
73199965 CCATTTCCAC
*
73199975 GCATCTTATAACAATTTGAGTGGCCCAATTCCAAATTGGTTATGCAATATGAGTCAACTTAGCAC
1 GCATCTTATAACAATTTGAGTGGCCCAATTCCAAATTGCTTATGCAATATGAGTCAACTTAGCAC
73200040 TTTCTAT
66 TTTCTAT
* * * * * *
73200047 GCATCTTATAACAATTTCAATGGCCCAATACCAAGTTGCTTATGTAATATGAGTCGACTTAGCGA
1 GCATCTTATAACAATTTGAGTGGCCCAATTCCAAATTGCTTATGCAATATGAGTCAACTTAGC-A
73200112 -TTT-TGAT
65 CTTTCT-AT
* * *
73200119 GCATCTTATAACAATTTGAGTGGCTCAATTCCAAATTGCTT-GGACAATATGAGTCAACTTGGCA
1 GCATCTTATAACAATTTGAGTGGCCCAATTCCAAATTGCTTATG-CAATATGAGTCAACTTAGCA
*
73200183 CTTTCGAT
65 CTTTCTAT
* **
73200191 GTATCTTATAACAATTTGAGTGGCCCAATTCCAAATTGCTTGGGCAATATGAGT
1 GCATCTTATAACAATTTGAGTGGCCCAATTCCAAATTGCTTATGCAATATGAGT
73200245 GCTCTGAGTG
Statistics
Matches: 173, Mismatches: 19, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
71 3 0.02
72 167 0.97
73 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (72 bp):
GCATCTTATAACAATTTGAGTGGCCCAATTCCAAATTGCTTATGCAATATGAGTCAACTTAGCAC
TTTCTAT
Found at i:73200240 original size:144 final size:144
Alignment explanation
Indices: 73199975--73200244 Score: 407
Period size: 144 Copynumber: 1.9 Consensus size: 144
73199965 CCATTTCCAC
* *
73199975 GCATCTTATAACAATTTGAGTGGCCCAATTCCAAATTGGTTATGCAATATGAGTCAACTTAGCAC
1 GCATCTTATAACAATTTGAGTGGCCCAATTCCAAATTGCTTAGGCAATATGAGTCAACTTAGCAC
* * * *
73200040 TTTCTATGCATCTTATAACAATTTCAATGGCCCAATACCAAGTTGCTTATGTAATATGAGTCGAC
66 TTTCGATGCATCTTATAACAATTTCAATGGCCCAATACCAAATTGCTTAGGCAATATGAGTCGAC
73200105 TTAGCGATTTTGAT
131 TTAGCGATTTTGAT
* *
73200119 GCATCTTATAACAATTTGAGTGGCTCAATTCCAAATTGCTT-GGACAATATGAGTCAACTTGGCA
1 GCATCTTATAACAATTTGAGTGGCCCAATTCCAAATTGCTTAGG-CAATATGAGTCAACTTAGCA
* * * * *
73200183 CTTTCGATGTATCTTATAACAATTTGAGTGGCCCAATTCCAAATTGCTTGGGCAATATGAGT
65 CTTTCGATGCATCTTATAACAATTTCAATGGCCCAATACCAAATTGCTTAGGCAATATGAGT
73200245 GCTCTGAGTG
Statistics
Matches: 112, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
143 1 0.01
144 111 0.99
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (144 bp):
GCATCTTATAACAATTTGAGTGGCCCAATTCCAAATTGCTTAGGCAATATGAGTCAACTTAGCAC
TTTCGATGCATCTTATAACAATTTCAATGGCCCAATACCAAATTGCTTAGGCAATATGAGTCGAC
TTAGCGATTTTGAT
Found at i:73208089 original size:18 final size:18
Alignment explanation
Indices: 73208062--73208154 Score: 150
Period size: 18 Copynumber: 5.2 Consensus size: 18
73208052 TACGACCGTT
73208062 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
73208080 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
73208098 TACAGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
73208116 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
73208134 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
73208152 TAC
1 TAC
73208155 AGTAGTTGGG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 68 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:73245271 original size:14 final size:14
Alignment explanation
Indices: 73245241--73245269 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
73245231 CCAAGTGGGC
73245241 TTATTTTAAGAATT
1 TTATTTTAAGAATT
73245255 TTATTTTAA-AATT
1 TTATTTTAAGAATT
73245268 TT
1 TT
73245270 TAAATATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (14 bp):
TTATTTTAAGAATT
Found at i:73248467 original size:6 final size:6
Alignment explanation
Indices: 73248461--73248494 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
73248451 TTTTACATAG
* *
73248461 TTTTAG TTTTAG TTTTAA TTTTAA TTTTAA TTTT
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTT
73248495 CCTTTTCAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.71
Consensus pattern (6 bp):
TTTTAA
Found at i:73248475 original size:12 final size:12
Alignment explanation
Indices: 73248458--73248494 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
73248448 TCTTTTTACA
*
73248458 TAGTTTTAGTTT
1 TAGTTTTAATTT
73248470 TAGTTTTAATTT
1 TAGTTTTAATTT
*
73248482 TAATTTTAATTT
1 TAGTTTTAATTT
73248494 T
1 T
73248495 CCTTTTCAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (12 bp):
TAGTTTTAATTT
Found at i:73252169 original size:193 final size:193
Alignment explanation
Indices: 73251614--73252297 Score: 1073
Period size: 193 Copynumber: 3.5 Consensus size: 193
73251604 GGTAGAAAAA
* * * * * *
73251614 TTAGGATTATTGACATGTTTAACTCAGTCCATATAATGTCTTTTTCAGGAGGTAAAGAAAATGCA
1 TTAGGATGACTGACCTGTTTAACCCAGTCCATATAATGTCTTTTTCAGGAGCTAAAGGAAATGCA
* * * *
73251679 TCTCACGTGCGCCAATTAGTGGGAATGAGAGGACTAACGTCTGATCCCCAAGGAAAAATGATCGA
66 TCTCACGTGCACCAATTAGTGGGAATGAGAGGATTAATGTCTGATCCCCAAGGACAAATGATCGA
*
73251744 TGCGGTAGAAAAATTACGCCAATCTATTGAGATATGGTTTGCAACAAGAAATGAATCCTAATT
131 TGCGGTAGAAAAATTACGCCAATCTATTGAGATATGGTTTGCGACAAGAAATGAATCCTAATT
* *
73251807 TTAGGATGATTGACCTGTTTAACCCAGTCAATATAATGTCTTTTT-AGGAGCTAAAGGAAATGCA
1 TTAGGATGACTGACCTGTTTAACCCAGTCCATATAATGTCTTTTTCAGGAGCTAAAGGAAATGCA
* * *
73251871 TCTCACGTGCACCAATTAGTGGGAACGAAAGGATTAATGTCGGATCCCCAAGGACAAATGATCGA
66 TCTCACGTGCACCAATTAGTGGGAATGAGAGGATTAATGTCTGATCCCCAAGGACAAATGATCGA
* *
73251936 TGCGGTAGAAAAATTACGCCAATCTATTGAGATGTGGTTTGCGACAAGAAATAAATCCTAATT
131 TGCGGTAGAAAAATTACGCCAATCTATTGAGATATGGTTTGCGACAAGAAATGAATCCTAATT
* * * *
73251999 TTAGGATGACTGACCTGTTTAACCCACTACATATAATGTCTTTTTCATGAGCTAAAGGAAATGCG
1 TTAGGATGACTGACCTGTTTAACCCAGTCCATATAATGTCTTTTTCAGGAGCTAAAGGAAATGCA
* * *
73252064 TCTCATGTGCACCAATTAGTGGGAATGAGAGGATTAATGTCTGATCCCTAAGGACAAATGATCAA
66 TCTCACGTGCACCAATTAGTGGGAATGAGAGGATTAATGTCTGATCCCCAAGGACAAATGATCGA
* * *
73252129 TGCGATAGAAAAATTACGCCAATCTATTAAGATATGGTTTGCGACAAGAAATGAATCCTGATT
131 TGCGGTAGAAAAATTACGCCAATCTATTGAGATATGGTTTGCGACAAGAAATGAATCCTAATT
* *
73252192 TTAGGATGACTGACTTGTTTAACCCAGTCCATATAATGTCTTTTTCAGGAGCTAAAAGAAATGCA
1 TTAGGATGACTGACCTGTTTAACCCAGTCCATATAATGTCTTTTTCAGGAGCTAAAGGAAATGCA
* *
73252257 TCTCGCGTGCACCAATTAGTGGCAATGAGAGGATTAATGTC
66 TCTCACGTGCACCAATTAGTGGGAATGAGAGGATTAATGTC
73252298 GGATTGTGAT
Statistics
Matches: 448, Mismatches: 42, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
192 176 0.39
193 272 0.61
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (193 bp):
TTAGGATGACTGACCTGTTTAACCCAGTCCATATAATGTCTTTTTCAGGAGCTAAAGGAAATGCA
TCTCACGTGCACCAATTAGTGGGAATGAGAGGATTAATGTCTGATCCCCAAGGACAAATGATCGA
TGCGGTAGAAAAATTACGCCAATCTATTGAGATATGGTTTGCGACAAGAAATGAATCCTAATT
Found at i:73256115 original size:193 final size:193
Alignment explanation
Indices: 73255482--73256121 Score: 1023
Period size: 192 Copynumber: 3.3 Consensus size: 193
73255472 GGGAATGTAC
**
73255482 ATGCGGTAGAAAAATTACGCCAATCTATTGAGATATGGTTTGTGACAAGAAATGAATCCTAATTT
1 ATGCGGTAGAAAAATTACGCCAATCTATTGAGATATGGTTTGCAACAAGAAATGAATCCTAATTT
* * *
73255547 TAGGGTTATTGACCTATTTAATCCAGTCCATA-AATGTCTTTTTCAGGAGCTAAAGGAAATGCAT
66 TAGGATTATTGACCTGTTTAACCCAGTCCATATAATGTCTTTTTCAGGAGCTAAAGGAAATGCAT
*
73255611 CTCACGTGCGCCAATTAGTGGGAATGAGAGGATTAATGTCGGATCCCCAAGGACAAATGATCG
131 CTCACGTGCACCAATTAGTGGGAATGAGAGGATTAATGTCGGATCCCCAAGGACAAATGATCG
** * *
73255674 ATATGGTAGAAAAATTATGCCAATCTAGTGAGATATGGTTTGCAACAAGAAATGAATCCTAATTT
1 ATGCGGTAGAAAAATTACGCCAATCTATTGAGATATGGTTTGCAACAAGAAATGAATCCTAATTT
* *
73255739 TAGGATTATTGACCTGTTTAACCCAGTCCATATAATATCTTTTTCAGGAGCTAAAGGAAATACAT
66 TAGGATTATTGACCTGTTTAACCCAGTCCATATAATGTCTTTTTCAGGAGCTAAAGGAAATGCAT
** * * *
73255804 CTCACGTG-TGCAATTAGTGGAAATGAGAGTATTAATGTCAGATCCCCAAGGACAAATGATCG
131 CTCACGTGCACCAATTAGTGGGAATGAGAGGATTAATGTCGGATCCCCAAGGACAAATGATCG
* * *
73255866 ATGCGGTAGAAAATTTACGCCAATCTATTGAGATATGGTTTGCGACAAGAAATGAATCATAATTT
1 ATGCGGTAGAAAAATTACGCCAATCTATTGAGATATGGTTTGCAACAAGAAATGAATCCTAATTT
* *
73255931 TAGGATGATTGACCTGTTTAACCCAGTCAATATAATGTCTTTTTCAGGAGCTAAAGGAAATGCAT
66 TAGGATTATTGACCTGTTTAACCCAGTCCATATAATGTCTTTTTCAGGAGCTAAAGGAAATGCAT
* *
73255996 CTCACGTGCACCAATTAGTGGGAATGAGAGGATTAATATCGGATCCCTAAGGACAAATGATCG
131 CTCACGTGCACCAATTAGTGGGAATGAGAGGATTAATGTCGGATCCCCAAGGACAAATGATCG
* * *
73256059 ATGCGGTAGAAAAATTACGTCAATCTATTGAAATGTGGTTTGCAACAAGAAATGAATCCTAAT
1 ATGCGGTAGAAAAATTACGCCAATCTATTGAGATATGGTTTGCAACAAGAAATGAATCCTAAT
73256122 GTCTTTTTCA
Statistics
Matches: 406, Mismatches: 40, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
192 264 0.65
193 142 0.35
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (193 bp):
ATGCGGTAGAAAAATTACGCCAATCTATTGAGATATGGTTTGCAACAAGAAATGAATCCTAATTT
TAGGATTATTGACCTGTTTAACCCAGTCCATATAATGTCTTTTTCAGGAGCTAAAGGAAATGCAT
CTCACGTGCACCAATTAGTGGGAATGAGAGGATTAATGTCGGATCCCCAAGGACAAATGATCG
Found at i:73259958 original size:2 final size:2
Alignment explanation
Indices: 73259951--73259988 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
73259941 AGTAGAAGAA
73259951 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
73259989 GAAGTGCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:73263702 original size:208 final size:208
Alignment explanation
Indices: 73263344--73263759 Score: 832
Period size: 208 Copynumber: 2.0 Consensus size: 208
73263334 CATTGATATA
73263344 CCTATTTTCTCAACATATCACACTTGAGTTTAATAATAGTCTCAACTTACATAATTTCCTTGTAT
1 CCTATTTTCTCAACATATCACACTTGAGTTTAATAATAGTCTCAACTTACATAATTTCCTTGTAT
73263409 CAACATACCAAAGATAATTATATATGTACATGTCACAAAATATATTATTCTCTTCCTGTTTCTTC
66 CAACATACCAAAGATAATTATATATGTACATGTCACAAAATATATTATTCTCTTCCTGTTTCTTC
73263474 ATAAGCATATATCATTCATTTCGTTATATCAATATTTCATGCACCATCATTTCCTTATATCTTAT
131 ATAAGCATATATCATTCATTTCGTTATATCAATATTTCATGCACCATCATTTCCTTATATCTTAT
73263539 ATATATTTATTTT
196 ATATATTTATTTT
73263552 CCTATTTTCTCAACATATCACACTTGAGTTTAATAATAGTCTCAACTTACATAATTTCCTTGTAT
1 CCTATTTTCTCAACATATCACACTTGAGTTTAATAATAGTCTCAACTTACATAATTTCCTTGTAT
73263617 CAACATACCAAAGATAATTATATATGTACATGTCACAAAATATATTATTCTCTTCCTGTTTCTTC
66 CAACATACCAAAGATAATTATATATGTACATGTCACAAAATATATTATTCTCTTCCTGTTTCTTC
73263682 ATAAGCATATATCATTCATTTCGTTATATCAATATTTCATGCACCATCATTTCCTTATATCTTAT
131 ATAAGCATATATCATTCATTTCGTTATATCAATATTTCATGCACCATCATTTCCTTATATCTTAT
73263747 ATATATTTATTTT
196 ATATATTTATTTT
73263760 GGTAATAGTT
Statistics
Matches: 208, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
208 208 1.00
ACGTcount: A:0.32, C:0.19, G:0.05, T:0.43
Consensus pattern (208 bp):
CCTATTTTCTCAACATATCACACTTGAGTTTAATAATAGTCTCAACTTACATAATTTCCTTGTAT
CAACATACCAAAGATAATTATATATGTACATGTCACAAAATATATTATTCTCTTCCTGTTTCTTC
ATAAGCATATATCATTCATTTCGTTATATCAATATTTCATGCACCATCATTTCCTTATATCTTAT
ATATATTTATTTT
Found at i:73263916 original size:13 final size:13
Alignment explanation
Indices: 73263866--73263921 Score: 51
Period size: 13 Copynumber: 4.3 Consensus size: 13
73263856 CTACATATAT
*
73263866 TTCCATATGACCAA
1 TTCCATATAACC-A
*
73263880 TTCC-TATAAACA
1 TTCCATATAACCA
* * *
73263892 TTTCACACAACCA
1 TTCCATATAACCA
73263905 TTCCATATAACCA
1 TTCCATATAACCA
73263918 TTCC
1 TTCC
73263922 GTCTGATACA
Statistics
Matches: 32, Mismatches: 9, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
12 4 0.12
13 24 0.75
14 4 0.12
ACGTcount: A:0.36, C:0.32, G:0.02, T:0.30
Consensus pattern (13 bp):
TTCCATATAACCA
Found at i:73264101 original size:46 final size:46
Alignment explanation
Indices: 73264051--73264370 Score: 489
Period size: 46 Copynumber: 7.0 Consensus size: 46
73264041 TTCTGTCATG
73264051 TTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAAT
1 TTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAAT
*
73264097 TTGCCATGCTATCTTTCAACCATGGTCTTATTCATTTCATATCAAT
1 TTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAAT
*
73264143 TTGCCATGCTATCTTTCAACCATGGTCTTATTCATTTCATATCAAT
1 TTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAAT
* *
73264189 TTGCCATGCTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCA-AT
** * **
73264236 TT-CCATGGTATCTTTCAACCATGGTCTTACACATTTCGTATCACG
1 TTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAAT
** *
73264281 TTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAAC
1 TTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAAT
** *
73264327 TTGCCATGGTATCTTTCAACCATGGTCTTACACATTCCATATCA
1 TTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCA
73264371 GAGAGCACAT
Statistics
Matches: 260, Mismatches: 12, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
45 2 0.01
46 255 0.98
47 3 0.01
ACGTcount: A:0.24, C:0.25, G:0.11, T:0.41
Consensus pattern (46 bp):
TTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAAT
Found at i:73268842 original size:11 final size:12
Alignment explanation
Indices: 73268826--73268854 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
73268816 CGCCACGTTC
73268826 TATCTTTCCA-T
1 TATCTTTCCATT
73268837 TATCTTTCCATT
1 TATCTTTCCATT
73268849 TATCTT
1 TATCTT
73268855 CTTTATTCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 10 0.59
12 7 0.41
ACGTcount: A:0.17, C:0.24, G:0.00, T:0.59
Consensus pattern (12 bp):
TATCTTTCCATT
Found at i:73278533 original size:26 final size:27
Alignment explanation
Indices: 73278483--73278533 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
73278473 AGTTAATAAA
*
73278483 TTCTCTTTGAGTTTTTTTTTCAAGAAT
1 TTCTCTTTGAGTTTTTTTTACAAGAAT
*
73278510 TTCTC-TTGAGTTTTTTTTAGAAGA
1 TTCTCTTTGAGTTTTTTTTACAAGA
73278534 GTTTTAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.20, C:0.10, G:0.14, T:0.57
Consensus pattern (27 bp):
TTCTCTTTGAGTTTTTTTTACAAGAAT
Found at i:73278699 original size:11 final size:12
Alignment explanation
Indices: 73278683--73278711 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
73278673 CGCCACGTTC
73278683 TATCTTTCCA-T
1 TATCTTTCCATT
73278694 TATCTTTCCATT
1 TATCTTTCCATT
73278706 TATCTT
1 TATCTT
73278712 CTTTATTCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 10 0.59
12 7 0.41
ACGTcount: A:0.17, C:0.24, G:0.00, T:0.59
Consensus pattern (12 bp):
TATCTTTCCATT
Found at i:73283349 original size:11 final size:11
Alignment explanation
Indices: 73283333--73283357 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
73283323 GAAAATACAT
73283333 TAATTATAAAA
1 TAATTATAAAA
73283344 TAATTATAAAA
1 TAATTATAAAA
73283355 TAA
1 TAA
73283358 AATTGTTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
TAATTATAAAA
Done.