Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 218 of 235
Found at i:74038619 original size:116 final size:114
Alignment explanation
Indices: 74038375--74038640 Score: 367
Period size: 116 Copynumber: 2.3 Consensus size: 114
74038365 AAAAGAAAAA
* **
74038375 TTTCGTGTCAGAGTCAGATAT-AAAA-ATACGAAAAAAATTAAAAAATTTTTTTGGGTGCTGGCC
1 TTTCGTGTCAGAATCAGATATAAAAATATAAAAAAAAAATTAAAAAATTTTTTTGGGTGCTGGCC
* *
74038438 TGTCAATGGCCGGCACCGAGTGAATAGTAAAAAAACAATTTTTTTCTTTT
66 TGTCAATGGCCGGCACCCAGTGAACAGT-AAAAAACAATTTTTTTCTTTT
*
74038488 TTTCGTGTCAGAATCAGATATAAAAATATAAAAAAAAAATTTTAAAAATTTTTTTGGGGTGCTGG
1 TTTCGTGTCAGAATCAGATATAAAAATATAAAAAAAAAA-TTAAAAAATTTTTTT-GGGTGCTGG
****
74038553 CCTGTCAATGGCCGGCACCCAGTGAACAGT-AAAATTTTTTTTTTTCATTTT
64 CCTGTCAATGGCCGGCACCCAGTGAACAGTAAAAAACAATTTTTTTC-TTTT
**
74038604 TTTCGTGTCAGAATCAGATATAAAAATACGAAAAAAA
1 TTTCGTGTCAGAATCAGATATAAAAATATAAAAAAAA
74038641 TAAAAATTTT
Statistics
Matches: 136, Mismatches: 12, Indels: 7
0.88 0.08 0.05
Matches are distributed among these distances:
113 20 0.15
114 4 0.03
115 22 0.16
116 53 0.39
117 37 0.27
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (114 bp):
TTTCGTGTCAGAATCAGATATAAAAATATAAAAAAAAAATTAAAAAATTTTTTTGGGTGCTGGCC
TGTCAATGGCCGGCACCCAGTGAACAGTAAAAAACAATTTTTTTCTTTT
Found at i:74039055 original size:108 final size:111
Alignment explanation
Indices: 74038922--74039128 Score: 339
Period size: 108 Copynumber: 1.9 Consensus size: 111
74038912 AAAATTTTTT
*
74038922 TTTTACTGTTCACTGGGTGCCGGCCATTGACAGGCCAGCACCC-AAATTTTTTTTT-A-TTTTTT
1 TTTTACTGTTCACTGGGTACCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTAATTTTTTT
*
74038984 TCGTATTTTTATATCTGATTCTGACACGAAAAAAAAAGAAAAAAAA
66 TCGTATTTTTATATCTGACTCTGACACGAAAAAAAAAGAAAAAAAA
74039030 TTTTACTGTTCACTGGGTACCGGCCATTGACAGGCCAGCACCCAAAAAATTTTTTTTTAAATTTT
1 TTTTACTGTTCACTGGGTACCGGCCATTGACAGGCCAGCACCC--AAAATTTTTTTTT-AATTTT
*
74039095 TTTTTGTATTTTTATATCTGACTCTGACACGAAA
63 TTTTCGTATTTTTATATCTGACTCTGACACGAAA
74039129 TTTTTTTTTT
Statistics
Matches: 90, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
108 42 0.47
111 12 0.13
113 1 0.01
114 35 0.39
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.38
Consensus pattern (111 bp):
TTTTACTGTTCACTGGGTACCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTAATTTTTTT
TCGTATTTTTATATCTGACTCTGACACGAAAAAAAAAGAAAAAAAA
Found at i:74039136 original size:214 final size:209
Alignment explanation
Indices: 74038759--74039196 Score: 671
Period size: 214 Copynumber: 2.1 Consensus size: 209
74038749 GTCCTATAAA
***
74038759 TTTTTTTTAGTTTTTTTCGTATTTTTATATCTGATTCTAACACGAAAAAAAAGAAATTTTTTTAC
1 TTTTTTTTA-TTTTTTTCGTATTTTTATATCTGATTCTAACACGAAAAAAAAGAAAAAATTTTAC
** **
74038824 TGTATACTGGGTGTCGGCCATTGACAGGCCAGCACCAAATTTTTTTTTTTAAAATTTTTTTCGTA
65 TGTATACTGGGTACCGGCCATTGACAGGCCAGCACCAAAAATTTTTTTTTAAAATTTTTTTCGTA
*
74038889 TTTTTATATCTGATTCTGACACGAAAATTTTTTTTTTACTGTTCACTGGGTGCCGGCCATTGACA
130 TTTTTATATCTGACTCTGACACGAAAATTTTTTTTTTACTGTTCACTGGGTGCCGGCCATTGACA
74038954 GGCCAGCACCCAAAT
195 GGCCAGCACCCAAAT
*
74038969 TTTTTTTTATTTTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAAAAGAAAAAAAATTTT
1 TTTTTTTTATTTTTTTCGTATTTTTATATCTGATTCTAACACG-AAAAAAAAG--AAAAAATTTT
*
74039034 ACTGT-TCACTGGGTACCGGCCATTGACAGGCCAGCACCCAAAAAATTTTTTTTTAAATTTTTTT
63 ACTGTAT-ACTGGGTACCGGCCATTGACAGGCCAGCA-CC-AAAAATTTTTTTTTAAAATTTTTT
* * *
74039098 TTGTATTTTTATATCTGACTCTGACACGAAATTTTTTTTTTTACTGTTTACTGGGTGCCGGCCAT
125 TCGTATTTTTATATCTGACTCTGACACGAAAATTTTTTTTTTACTGTTCACTGGGTGCCGGCCAT
*
74039163 TGACAGGCCAGCACCCAATT
190 TGACAGGCCAGCACCCAAAT
*
74039183 TTTTTTTTCTTTTT
1 TTTTTTTTATTTTT
74039197 CCTATATCAG
Statistics
Matches: 207, Mismatches: 15, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
209 33 0.16
210 18 0.09
211 1 0.00
212 39 0.19
213 2 0.01
214 114 0.55
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.44
Consensus pattern (209 bp):
TTTTTTTTATTTTTTTCGTATTTTTATATCTGATTCTAACACGAAAAAAAAGAAAAAATTTTACT
GTATACTGGGTACCGGCCATTGACAGGCCAGCACCAAAAATTTTTTTTTAAAATTTTTTTCGTAT
TTTTATATCTGACTCTGACACGAAAATTTTTTTTTTACTGTTCACTGGGTGCCGGCCATTGACAG
GCCAGCACCCAAAT
Found at i:74041340 original size:40 final size:40
Alignment explanation
Indices: 74041296--74041468 Score: 102
Period size: 44 Copynumber: 4.1 Consensus size: 40
74041286 CCCTGAAGTT
*
74041296 GCAGTGGAACGGATTAAAACCA-CAGATCTTATCTCCCTAA
1 GCAGTGGAGCGGATTAAAACCACCA-ATCTTATCTCCCTAA
* ** * * *
74041336 GCAGT--AGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAA
1 GCAGTGGAGCGGATTAAAAC-CACCAA-TCTTATCTCCCTAA
* * ** *
74041376 GCAGTAGTGGAGCAGACTGAAAAAAACCAATCCTATCTCCCTAAA
1 GC---AGTGGAGCGGA-TTAAAACCACCAATCTTATCTCCCT-AA
74041421 GTTACAGTGGAGCGGATTAAAACCA-CAGATCTTATCTCCCTAA
1 G---CAGTGGAGCGGATTAAAACCACCA-ATCTTATCTCCCTAA
74041464 GCAGT
1 GCAGT
74041469 AGTGGAGCAG
Statistics
Matches: 98, Mismatches: 21, Indels: 28
0.67 0.14 0.19
Matches are distributed among these distances:
38 7 0.07
39 3 0.03
40 27 0.28
43 8 0.08
44 29 0.30
45 21 0.21
46 2 0.02
48 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.23
Consensus pattern (40 bp):
GCAGTGGAGCGGATTAAAACCACCAATCTTATCTCCCTAA
Found at i:74041345 original size:43 final size:43
Alignment explanation
Indices: 74041239--74041519 Score: 222
Period size: 40 Copynumber: 6.6 Consensus size: 43
74041229 AATTGTTATA
* ** * *
74041239 TATCTCCTTAAGCAGTAGTGGAGCAGACGAAAAAAACA-ATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGATTAAAAACACAGATCT
** * * * *
74041281 TATCTCCCTGAAGTTGCAGTGGAACGGATTAAAACCACAGATCT
1 TATCTCCCT-AAGCAGTAGTGGAGCAGATTAAAAACACAGATCT
*** *
74041325 TATCTCCCTAAGCAGTAGTGGAGCAGA-TCGCATCA-AG-TCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATTAAAAACACAGATCT
* * *
74041365 TATCTCCCTAAGCAGTAGTGGAGCAGACTGAAAAAAACCA-ATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGA-TTAAAAACA-CAGATCT
* *
74041409 TATCTCCCTAA--AGTTACAGTGGAGCGGATTAAAACCACAGATCT
1 TATCTCCCTAAGCAG-T--AGTGGAGCAGATTAAAAACACAGATCT
*** *
74041453 TATCTCCCTAAGCAGTAGTGGAGCAGA-TCGCATCA-AG-TCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATTAAAAACACAGATCT
74041493 TATCTCCCTAAGCAGTAGTGGAGCAGA
1 TATCTCCCTAAGCAGTAGTGGAGCAGA
74041520 CAAAAGAAAC
Statistics
Matches: 189, Mismatches: 37, Indels: 28
0.74 0.15 0.11
Matches are distributed among these distances:
40 60 0.32
41 4 0.02
42 20 0.11
43 46 0.24
44 46 0.24
45 11 0.06
46 2 0.01
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (43 bp):
TATCTCCCTAAGCAGTAGTGGAGCAGATTAAAAACACAGATCT
Found at i:74041465 original size:128 final size:127
Alignment explanation
Indices: 74041239--74041571 Score: 589
Period size: 128 Copynumber: 2.6 Consensus size: 127
74041229 AATTGTTATA
* *
74041239 TATCTCCTTAAGCAGTAGTGGAGCAGACGAAAAAAA-CAATCCTATCTCCCTGAAGTTGCAGTGG
1 TATCTCCCTAAGCAGTAGTGGAGCAGACGAAAAAAACCAATCCTATCTCCCTAAAGTTGCAGTGG
*
74041303 AACGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCT
66 AGCGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCT
*
74041365 TATCTCCCTAAGCAGTAGTGGAGCAGACTGAAAAAAACCAATCCTATCTCCCTAAAGTTACAGTG
1 TATCTCCCTAAGCAGTAGTGGAGCAGAC-GAAAAAAACCAATCCTATCTCCCTAAAGTTGCAGTG
74041430 GAGCGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCT
65 GAGCGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCT
74041493 TATCTCCCTAAGCAGTAGTGGAGCAGAC-AAAAGAAACCAATCCTATCTCCCTAAAGTTGCAGTG
1 TATCTCCCTAAGCAGTAGTGGAGCAGACGAAAA-AAACCAATCCTATCTCCCTAAAGTTGCAGTG
*
74041557 GAGCGAATTAAAACC
65 GAGCGGATTAAAACC
74041572 TAATCTCATC
Statistics
Matches: 198, Mismatches: 6, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
126 31 0.16
127 52 0.26
128 115 0.58
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.22
Consensus pattern (127 bp):
TATCTCCCTAAGCAGTAGTGGAGCAGACGAAAAAAACCAATCCTATCTCCCTAAAGTTGCAGTGG
AGCGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCT
Found at i:74043176 original size:18 final size:20
Alignment explanation
Indices: 74043153--74043195 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
74043143 CATATACATG
74043153 CATACATTTT-A-TAATACA
1 CATACATTTTAATTAATACA
74043171 CATACATTTTAATTAATACA
1 CATACATTTTAATTAATACA
*
74043191 TATAC
1 CATAC
74043196 TTATACATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 10 0.45
19 1 0.05
20 11 0.50
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.40
Consensus pattern (20 bp):
CATACATTTTAATTAATACA
Found at i:74043903 original size:110 final size:106
Alignment explanation
Indices: 74043676--74043904 Score: 255
Period size: 110 Copynumber: 2.1 Consensus size: 106
74043666 GGAAATTTTT
* * *
74043676 TTAAAAT-AAGGTAATATTTCGCATTTGGAAAATCGAGAAAACGTGCCCTAATGTGCTGGGTTTC
1 TTAAAATAAAGGCAATATTCCGCATTTGGAAAATCGAGAAAACGTGCCCTAATGTACTGGGTTTC
* *
74043740 GATTTCTCGTTCGACCAAATGACCAAATATCCTTTTAAACT
66 GATTTCTCGTTCGACCAAATAACCAAATATCCTTTTAAACA
* * ** *
74043781 TTCAAAATAATAAAGGCAATATTCCGTATTTGGAAATTCGAGAAGCCGTGCCCTAATTTACTGGG
1 TT---AA-AATAAAGGCAATATTCCGCATTTGGAAAATCGAGAAAACGTGCCCTAATGTACTGGG
* *
74043846 TTTCGATTTTTCTCGTGTTGAACCTAAATAACCGAATATCCTTTTAAA-A
62 TTTCGA--TTTCTCGT-TCG-ACC-AAATAACCAAATATCCTTTTAAACA
74043895 TTAAAATAAA
1 TTAAAATAAA
74043905 TGAGGTTTAA
Statistics
Matches: 102, Mismatches: 12, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
105 2 0.02
108 2 0.02
109 3 0.03
110 57 0.56
111 2 0.02
112 8 0.08
113 2 0.02
114 5 0.05
115 21 0.21
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (106 bp):
TTAAAATAAAGGCAATATTCCGCATTTGGAAAATCGAGAAAACGTGCCCTAATGTACTGGGTTTC
GATTTCTCGTTCGACCAAATAACCAAATATCCTTTTAAACA
Found at i:74051240 original size:18 final size:19
Alignment explanation
Indices: 74051214--74051258 Score: 67
Period size: 18 Copynumber: 2.5 Consensus size: 19
74051204 CTAGTTCTAT
*
74051214 TAAATAAATTATT-AAAAA
1 TAAAAAAATTATTAAAAAA
74051232 TAAAAAAA-TATTAAAAAA
1 TAAAAAAATTATTAAAAAA
74051250 TAAAAAAAT
1 TAAAAAAAT
74051259 CATGATTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 4 0.17
18 20 0.83
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (19 bp):
TAAAAAAATTATTAAAAAA
Found at i:74052108 original size:3 final size:3
Alignment explanation
Indices: 74052100--74052145 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
74052090 TGTTCATGAC
74052100 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
74052146 CCAAATCAGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:74052808 original size:52 final size:54
Alignment explanation
Indices: 74052735--74052890 Score: 165
Period size: 61 Copynumber: 2.8 Consensus size: 54
74052725 GTCCCGCAAT
*
74052735 TTTTTTTTTA-GTTTTGGGACACTGATGACCGGCACCAACTTTATC-AAATTAA
1 TTTTTTTTTAGGTTTTGGGACACTGATGGCCGGCACCAACTTTATCTAAATTAA
* * * *
74052787 -TTTTTTTTAGGTTCTGGGACACTGATGGCTGGCAACAACACCAACTTTATCTGATTTAA
1 TTTTTTTTTAGGTTTTGGGACACTGATGGCCGG------CACCAACTTTATCTAAATTAA
* *
74052846 TTTTTTTTTTTGGTTTTGGAACACTGATGGCCGGCACCAACTTTA
1 -TTTTTTTTTAGGTTTTGGGACACTGATGGCCGGCACCAACTTTA
74052891 ACAGATATAT
Statistics
Matches: 85, Mismatches: 9, Indels: 17
0.77 0.08 0.15
Matches are distributed among these distances:
51 9 0.11
52 19 0.22
55 11 0.13
58 13 0.15
59 5 0.06
61 28 0.33
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40
Consensus pattern (54 bp):
TTTTTTTTTAGGTTTTGGGACACTGATGGCCGGCACCAACTTTATCTAAATTAA
Found at i:74056156 original size:11 final size:11
Alignment explanation
Indices: 74056123--74056164 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
74056113 TATATTGAAT
74056123 TGAAATTAAAA
1 TGAAATTAAAA
* *
74056134 TTGGACTTAAAA
1 -TGAAATTAAAA
74056146 TGAAATTAAAA
1 TGAAATTAAAA
74056157 TGAAATTA
1 TGAAATTA
74056165 TATTTAAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
11 17 0.65
12 9 0.35
ACGTcount: A:0.55, C:0.02, G:0.12, T:0.31
Consensus pattern (11 bp):
TGAAATTAAAA
Found at i:74056197 original size:18 final size:17
Alignment explanation
Indices: 74056151--74056190 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
74056141 TAAAATGAAA
*
74056151 TTAAAATGAAATTATAT
1 TTAAAATGAAAATATAT
74056168 TTAAAATGAAAATATAT
1 TTAAAATGAAAATATAT
74056185 TTAAAA
1 TTAAAA
74056191 AAGAAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (17 bp):
TTAAAATGAAAATATAT
Found at i:74056198 original size:19 final size:17
Alignment explanation
Indices: 74056151--74056197 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
74056141 TAAAATGAAA
* *
74056151 TTAAAATGAAATTATAT
1 TTAAAAAGAAAATATAT
*
74056168 TTAAAATGAAAATATAT
1 TTAAAAAGAAAATATAT
74056185 TTAAAAAAGAAAA
1 TT-AAAAAGAAAA
74056198 AAAAATATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 18 0.67
18 9 0.33
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (17 bp):
TTAAAAAGAAAATATAT
Found at i:74056379 original size:38 final size:38
Alignment explanation
Indices: 74056344--74056465 Score: 130
Period size: 38 Copynumber: 3.3 Consensus size: 38
74056334 ATTAAAAATT
*
74056344 AAAAAATGAAATTCAAATGAAGTTTTAATTAAAAAATA
1 AAAAAATGAAATTCAAATGAAGTTTTAATTAAAAAAGA
* * * * *
74056382 AAAAAA-G-CA---AAATGAA-ATTCAAATAAAATGAGA
1 AAAAAATGAAATTCAAATGAAGTTTTAATTAAAA-AAGA
74056415 AAAAAATGAAATTCAAATGAAGTTTTAATTAAAAAAGA
1 AAAAAATGAAATTCAAATGAAGTTTTAATTAAAAAAGA
74056453 AAAAAAGTGAAAT
1 AAAAAA-TGAAAT
74056466 GAAATTCAAA
Statistics
Matches: 65, Mismatches: 11, Indels: 15
0.71 0.12 0.16
Matches are distributed among these distances:
32 9 0.14
33 15 0.23
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 22 0.34
39 15 0.23
ACGTcount: A:0.63, C:0.03, G:0.11, T:0.23
Consensus pattern (38 bp):
AAAAAATGAAATTCAAATGAAGTTTTAATTAAAAAAGA
Found at i:74056418 original size:33 final size:33
Alignment explanation
Indices: 74056381--74056495 Score: 90
Period size: 33 Copynumber: 3.3 Consensus size: 33
74056371 ATTAAAAAAT
*
74056381 AAAAAAAGCAAAATGAAATTCAAATAAAATGAG
1 AAAAAAAGAAAAATGAAATTCAAATAAAATGAG
* * * *
74056414 AAAAAAATGAAATTCAAATGAAGTTTTAATTAAAA-AAG
1 AAAAAAA-G-AA---AAATGAA-ATTCAAATAAAATGAG
**
74056452 AAAAAAAGTGAAATGAAATTCAAATAAAATGA-
1 AAAAAAAGAAAAATGAAATTCAAATAAAATGAG
74056484 AAAAAAACGAAA
1 AAAAAAA-GAAA
74056496 TTCAAATGAA
Statistics
Matches: 61, Mismatches: 13, Indels: 16
0.68 0.14 0.18
Matches are distributed among these distances:
32 16 0.26
33 17 0.28
34 1 0.02
35 1 0.02
37 1 0.02
38 16 0.26
39 9 0.15
ACGTcount: A:0.66, C:0.04, G:0.11, T:0.18
Consensus pattern (33 bp):
AAAAAAAGAAAAATGAAATTCAAATAAAATGAG
Found at i:74056424 original size:71 final size:70
Alignment explanation
Indices: 74056344--74056505 Score: 279
Period size: 71 Copynumber: 2.3 Consensus size: 70
74056334 ATTAAAAATT
*
74056344 AAAAAATGAAATTCAAATGAAGTTTTAATTAAAAAATAAAAAAAGCAAAATGAAATTCAAATAAA
1 AAAAAATGAAATTCAAATGAAGTTTTAATTAAAAAAGAAAAAAAGCAAAATGAAATTCAAATAAA
74056409 ATGAGA
66 ATGA-A
**
74056415 AAAAAATGAAATTCAAATGAAGTTTTAATTAAAAAAGAAAAAAAGTGAAATGAAATTCAAATAAA
1 AAAAAATGAAATTCAAATGAAGTTTTAATTAAAAAAGAAAAAAAGCAAAATGAAATTCAAATAAA
74056480 ATGAA
66 ATGAA
*
74056485 AAAAAACGAAATTCAAATGAA
1 AAAAAATGAAATTCAAATGAA
74056506 ATTTAAAAAG
Statistics
Matches: 87, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
70 21 0.24
71 66 0.76
ACGTcount: A:0.64, C:0.04, G:0.10, T:0.22
Consensus pattern (70 bp):
AAAAAATGAAATTCAAATGAAGTTTTAATTAAAAAAGAAAAAAAGCAAAATGAAATTCAAATAAA
ATGAA
Found at i:74056513 original size:26 final size:23
Alignment explanation
Indices: 74056466--74056529 Score: 65
Period size: 26 Copynumber: 2.7 Consensus size: 23
74056456 AAAGTGAAAT
*
74056466 GAAATTCAAATAAAATGAAAAAAAA
1 GAAATTCAAATGAAATG--AAAAAA
**
74056491 CGAAATTCAAATGAAATTTAAAAA
1 -GAAATTCAAATGAAATGAAAAAA
*
74056515 GAAATTGAAATGAAA
1 GAAATTCAAATGAAA
74056530 AAAAATTGAC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
23 14 0.41
24 5 0.15
26 15 0.44
ACGTcount: A:0.64, C:0.05, G:0.11, T:0.20
Consensus pattern (23 bp):
GAAATTCAAATGAAATGAAAAAA
Found at i:74056513 original size:33 final size:33
Alignment explanation
Indices: 74056344--74056518 Score: 86
Period size: 33 Copynumber: 5.0 Consensus size: 33
74056334 ATTAAAAATT
* * * *
74056344 AAAAAATGAAATTCAAATGAAGTTT-TAATTAA
1 AAAAAAAGAAATTCAAATGAAATTTAAAATGAA
**
74056376 AAAATAAA-AAAAGCAAAATGAAATTCAAATAAAATGAGA
1 AAAA-AAAGAAATTC-AAATGAAATT----TAAAATGA-A
* * * *
74056415 AAAAAATGAAATTCAAATGAAGTTT-TAATTAA
1 AAAAAAAGAAATTCAAATGAAATTTAAAATGAA
* * *
74056447 AAAAGAAAAAAAGTGAAATGAAATTCAAATAAAATGAA
1 AAAA-AAAGAAATTCAAATGAAATT----TAAAATGAA
* *
74056485 AAAAAACGAAATTCAAATGAAATTTAAAAAGAA
1 AAAAAAAGAAATTCAAATGAAATTTAAAATGAA
74056518 A
1 A
74056519 TTGAAATGAA
Statistics
Matches: 104, Mismatches: 24, Indels: 29
0.66 0.15 0.18
Matches are distributed among these distances:
32 13 0.12
33 39 0.38
34 1 0.01
37 18 0.17
38 24 0.23
39 9 0.09
ACGTcount: A:0.64, C:0.04, G:0.10, T:0.22
Consensus pattern (33 bp):
AAAAAAAGAAATTCAAATGAAATTTAAAATGAA
Found at i:74056599 original size:17 final size:17
Alignment explanation
Indices: 74056579--74056612 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
74056569 AAAAATAAGT
74056579 GAAATGAAATTCAAATA
1 GAAATGAAATTCAAATA
*
74056596 GAAATGAAGTTCAAATA
1 GAAATGAAATTCAAATA
74056613 ACATGAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.15, T:0.24
Consensus pattern (17 bp):
GAAATGAAATTCAAATA
Found at i:74056648 original size:124 final size:120
Alignment explanation
Indices: 74056428--74056844 Score: 395
Period size: 124 Copynumber: 3.4 Consensus size: 120
74056418 AAATGAAATT
74056428 CAAATGAAGTTTTAATTAAAAAAGAAAAAAAGTGAAATGAAATTCAAATA-AAATGAA---AAAA
1 CAAATGAAGTTTTAATTAAAAAAGAAAAAAAGTGAAATGAAATTCAAATAGAAATGAATTCAAAA
** *
74056489 AACGAAATTCAAATGAAATTTAAAAAGAAATTGAAATGAAAAAAAATTGACATC-A
66 AACGAAATAAAAATAAAATTTAAAAAGAAATTGAAATGAAAAAAAATTGACA-CGA
* *
74056544 CAAAATGATA-TTTTAATTGAAAAGGAAAAATAAGTGAAATGAAATTCAAATAGAAATGAAGTTC
1 C-AAATGA-AGTTTTAATTAAAAAAGAAAAA-AAGTGAAATGAAATTCAAATAGAAATGAA-TTC
* * *
74056608 AAATAACATGAAA-AAAAATAAAATTTAAAAAGAAATTGAAATGAAAAAAGATTGATACGA
62 AAA-AA-ACGAAATAAAAATAAAATTTAAAAAGAAATTGAAATGAAAAAAAATTGACACGA
* * *
74056668 CAAATGAAGTTTTTAATTAAAAAATAAAAAAA-TGAAATGAAATTTAAATTGAAATGAAATTCAT
1 CAAATGAAG-TTTTAATTAAAAAAGAAAAAAAGTGAAATGAAATTCAAATAGAAATG-AATTCA-
* * * * * *
74056732 GAGAAAA-AAAATTAAATTCAAATGAATTTTAAAAAGAAATTAAAATTATAAAAAAAATT-ACAT
63 -A-AAAACGAAA-T-AA---AAATAAAATTTAAAAAGAAATTGAAA-T-GAAAAAAAATTGACAC
74056795 GA
119 GA
* *
74056797 CAAATGAAGTTTTTAATTGAAAAAGAAAAAAAAAGTAAAATGAAATTC
1 CAAATGAAG-TTTTAATT-AAAAA-AGAAAAAAAGTGAAATGAAATTC
74056845 TGAAATTCAA
Statistics
Matches: 249, Mismatches: 24, Indels: 40
0.80 0.08 0.13
Matches are distributed among these distances:
116 1 0.00
117 24 0.10
118 22 0.09
119 7 0.03
122 30 0.12
123 15 0.06
124 63 0.25
125 8 0.03
128 23 0.09
129 23 0.09
130 14 0.06
131 8 0.03
132 11 0.04
ACGTcount: A:0.60, C:0.04, G:0.11, T:0.25
Consensus pattern (120 bp):
CAAATGAAGTTTTAATTAAAAAAGAAAAAAAGTGAAATGAAATTCAAATAGAAATGAATTCAAAA
AACGAAATAAAAATAAAATTTAAAAAGAAATTGAAATGAAAAAAAATTGACACGA
Found at i:74056789 original size:18 final size:19
Alignment explanation
Indices: 74056756--74056791 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
74056746 AATTCAAATG
*
74056756 AATTTTAAAAAGAAATTAA
1 AATTATAAAAAGAAATTAA
74056775 AATTATAAAAA-AAATTA
1 AATTATAAAAAGAAATTA
74056792 CATGACAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (19 bp):
AATTATAAAAAGAAATTAA
Found at i:74056920 original size:20 final size:20
Alignment explanation
Indices: 74056879--74056921 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
74056869 GGTTGAAATG
*
74056879 AAATTAAAATGACAAGAGAA
1 AAATTAAAATGACAAGAAAA
*
74056899 AAATTAAATTGA-AATGAAAA
1 AAATTAAAATGACAA-GAAAA
74056919 AAA
1 AAA
74056922 AAGGTTGACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 2 0.10
20 18 0.90
ACGTcount: A:0.67, C:0.02, G:0.12, T:0.19
Consensus pattern (20 bp):
AAATTAAAATGACAAGAAAA
Found at i:74058364 original size:88 final size:88
Alignment explanation
Indices: 74058172--74058415 Score: 294
Period size: 88 Copynumber: 2.7 Consensus size: 88
74058162 TTAAAAAAAT
* * ** *
74058172 AAATATATAATTCGAAAAATTAATAATAC-GCAAC-AAATTAAATTTACAGATACAAGAAAATAT
1 AAATATAAAATTCGAACAACAAATAATACAG--ACTAAATTAAATTTACAGATACAA-AAAATAC
* * * *
74058235 AAATATTCTAGAATATTAATACAAGG
63 AAACATTCTAAAAAATTAATACAAGA
74058261 AAATATAAAATTCGAACAACAAATAATACAGACTAAATTAAATTTACAGATACAAAAAATACAAA
1 AAATATAAAATTCGAACAACAAATAATACAGACTAAATTAAATTTACAGATACAAAAAATACAAA
*
74058326 CATTCTAAAAAATTAATACACGA
66 CATTCTAAAAAATTAATACAAGA
* * * **
74058349 AAATATAAAATTCGAACAACAAATAATAAATATTAAATTTGATTTACAGATACAAAAATAATACA
1 AAATATAAAATTCGAACAACAAATAATACAGACTAAATTAAATTTACAGATAC-AAAA-AATACA
74058414 AA
64 AA
74058416 AATTTTGAAT
Statistics
Matches: 136, Mismatches: 15, Indels: 7
0.86 0.09 0.04
Matches are distributed among these distances:
88 77 0.57
89 50 0.37
90 9 0.07
ACGTcount: A:0.58, C:0.11, G:0.06, T:0.26
Consensus pattern (88 bp):
AAATATAAAATTCGAACAACAAATAATACAGACTAAATTAAATTTACAGATACAAAAAATACAAA
CATTCTAAAAAATTAATACAAGA
Found at i:74058754 original size:28 final size:27
Alignment explanation
Indices: 74058685--74058757 Score: 74
Period size: 28 Copynumber: 2.7 Consensus size: 27
74058675 AGTTGTGCAT
* * *
74058685 TACAAAACACTCCCATCTGCAATCCAC
1 TACAAAACACTCTCATTTGCAATACAC
* ** *
74058712 TACAAAAAAAACTCATTTGATAATACAC
1 TACAAAACACTCTCATTTG-CAATACAC
74058740 TACAAAACACTCTCATTT
1 TACAAAACACTCTCATTT
74058758 TCATAGCACT
Statistics
Matches: 35, Mismatches: 10, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
27 14 0.40
28 21 0.60
ACGTcount: A:0.44, C:0.29, G:0.03, T:0.25
Consensus pattern (27 bp):
TACAAAACACTCTCATTTGCAATACAC
Found at i:74058968 original size:51 final size:51
Alignment explanation
Indices: 74058913--74059073 Score: 146
Period size: 53 Copynumber: 3.1 Consensus size: 51
74058903 TTTTCTAAAA
*
74058913 CCAAAAAAAATATTTTAAAATCTGATAAAGTTGGTGCGGGCCATTAGTGTC
1 CCAAAAAAAATATTTTAAAATCTGATAAAGTTGGTGCCGGCCATTAGTGTC
* **** * * * * *
74058964 CCAAAACCAAAAAAAAAAAAAATCTGAAAAAGTTGGTACTGGTCATCAGTGTC
1 CCAAAA--AAAATATTTTAAAATCTGATAAAGTTGGTGCCGGCCATTAGTGTC
* * *
74059017 CCAGAACCAAAAT-TTTT-TAATCTGATAAAGTTGGTGCCGGCCATTAGTATC
1 CCA-AA-AAAAATATTTTAAAATCTGATAAAGTTGGTGCCGGCCATTAGTGTC
74059068 CCAAAA
1 CCAAAA
74059074 CTAAAAAAAA
Statistics
Matches: 82, Mismatches: 24, Indels: 10
0.71 0.21 0.09
Matches are distributed among these distances:
50 2 0.02
51 36 0.44
53 42 0.51
54 2 0.02
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.25
Consensus pattern (51 bp):
CCAAAAAAAATATTTTAAAATCTGATAAAGTTGGTGCCGGCCATTAGTGTC
Found at i:74067601 original size:20 final size:20
Alignment explanation
Indices: 74067576--74067636 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
74067566 TTGAAATGCT
74067576 AACAGAGGCACCGAAGTGCA
1 AACAGAGGCACCGAAGTGCA
74067596 AACAGAGGCACCGAAGTGCA
1 AACAGAGGCACCGAAGTGCA
*
74067616 AACAGAGGCACCAAAGTGCA
1 AACAGAGGCACCGAAGTGCA
74067636 A
1 A
74067637 TCCCATACAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.43, C:0.25, G:0.28, T:0.05
Consensus pattern (20 bp):
AACAGAGGCACCGAAGTGCA
Found at i:74074395 original size:19 final size:18
Alignment explanation
Indices: 74074371--74074411 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
74074361 CTTTTCTTCC
74074371 TTTTTCTATTCCATTGTAA
1 TTTTTCT-TTCCATTGTAA
**
74074390 TTTTTCTTTCTTTTGTAA
1 TTTTTCTTTCCATTGTAA
74074408 TTTT
1 TTTT
74074412 AGTAGGTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.15, C:0.12, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTTCTTTCCATTGTAA
Found at i:74082872 original size:25 final size:25
Alignment explanation
Indices: 74082802--74082858 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
74082792 ATTTTTAGAT
* *
74082802 TGACAGTTCATTAT-AGAATCAAAA
1 TGACATTTCATTTTCAGAATCAAAA
*
74082826 TGACATATCATTTTCAGAATCAAAA
1 TGACATTTCATTTTCAGAATCAAAA
74082851 TGACATTT
1 TGACATTT
74082859 GATTATTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 11 0.39
25 17 0.61
ACGTcount: A:0.42, C:0.14, G:0.11, T:0.33
Consensus pattern (25 bp):
TGACATTTCATTTTCAGAATCAAAA
Found at i:74085726 original size:20 final size:20
Alignment explanation
Indices: 74085701--74085746 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
74085691 TATATTCAAT
74085701 AATATTCAATTAAAAATAAA
1 AATATTCAATTAAAAATAAA
* ***
74085721 AATATTTAATTAGTTATAAA
1 AATATTCAATTAAAAATAAA
74085741 AATATT
1 AATATT
74085747 TTAATTATCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (20 bp):
AATATTCAATTAAAAATAAA
Found at i:74085761 original size:21 final size:20
Alignment explanation
Indices: 74085716--74085757 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
74085706 TCAATTAAAA
*
74085716 ATAAAAATATTTAATTAGTT
1 ATAAAAATATTTAATTAGTC
74085736 ATAAAAATATTTTAATTA-TC
1 ATAAAAATA-TTTAATTAGTC
74085756 AT
1 AT
74085758 TAAATTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (20 bp):
ATAAAAATATTTAATTAGTC
Found at i:74087266 original size:3 final size:3
Alignment explanation
Indices: 74087258--74087303 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
74087248 TTTTCCGTAG
74087258 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
74087304 CTAAAAAATC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:74088971 original size:18 final size:17
Alignment explanation
Indices: 74088948--74088982 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
74088938 TTGTTTATTG
74088948 ATTAAAAAATTTGTAAAA
1 ATTAAAAAATTT-TAAAA
*
74088966 ATTAAAAAGTTTTAAAA
1 ATTAAAAAATTTTAAAA
74088983 TGGTAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (17 bp):
ATTAAAAAATTTTAAAA
Found at i:74089058 original size:39 final size:38
Alignment explanation
Indices: 74088971--74089072 Score: 116
Period size: 39 Copynumber: 2.6 Consensus size: 38
74088961 TAAAAATTAA
* * * *
74088971 AAAGTTTT-AAAATGGTAAAAAAATTATAAAAGTTGTT
1 AAAGTTTTAAAAATTGTAAAAAAAATATAAAAATTCTT
*
74089008 AAATTTCTTAAAAATTGTAAAAAAAATATAAAAATTCTT
1 AAAGTT-TTAAAAATTGTAAAAAAAATATAAAAATTCTT
*
74089047 AAAGATTTTAAAAATATATAAAAAAA
1 AAAG-TTTTAAAAAT-TGTAAAAAAA
74089073 TTTGGAGTAT
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
37 5 0.09
38 2 0.04
39 36 0.67
40 11 0.20
ACGTcount: A:0.58, C:0.02, G:0.07, T:0.33
Consensus pattern (38 bp):
AAAGTTTTAAAAATTGTAAAAAAAATATAAAAATTCTT
Found at i:74089071 original size:30 final size:30
Alignment explanation
Indices: 74089012--74089070 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
74089002 GTTGTTAAAT
74089012 TTCTTAAAAATTGTAAAAAAAATATAAAAA
1 TTCTTAAAAATTGTAAAAAAAATATAAAAA
* * *
74089042 TTCTTAAAGATT-TTAAAAATATATAAAAA
1 TTCTTAAAAATTGTAAAAAAAATATAAAAA
74089071 AATTTGGAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.34
Consensus pattern (30 bp):
TTCTTAAAAATTGTAAAAAAAATATAAAAA
Found at i:74089716 original size:13 final size:13
Alignment explanation
Indices: 74089698--74089730 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
74089688 AGTCCGCCCG
74089698 TATTAATTTTTTA
1 TATTAATTTTTTA
74089711 TATTAA-TTTTTA
1 TATTAATTTTTTA
74089723 TA-TAATTT
1 TATTAATTT
74089731 CTTGTTATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 3 0.16
12 10 0.53
13 6 0.32
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
TATTAATTTTTTA
Found at i:74090224 original size:9 final size:9
Alignment explanation
Indices: 74090210--74090350 Score: 52
Period size: 9 Copynumber: 14.8 Consensus size: 9
74090200 CTGCTTAAAT
74090210 ATTTTTATA
1 ATTTTTATA
74090219 ATTTTTA-A
1 ATTTTTATA
74090227 ATATTTTAT-
1 AT-TTTTATA
*
74090236 ATTTTAAAATA
1 ATTTT--TATA
**
74090247 ATTTTTACC
1 ATTTTTATA
* *
74090256 ATTTTAAGA
1 ATTTTTATA
* * *
74090265 ATTCGTAACA
1 ATT-TTTATA
74090275 AATTTTTAATA
1 -ATTTTT-ATA
*
74090286 ATTTTTACA
1 ATTTTTATA
*
74090295 ACTTTTTACA
1 A-TTTTTATA
*
74090305 ATTTTTAAGA
1 ATTTTT-ATA
**
74090315 ATGCTTATA
1 ATTTTTATA
*
74090324 ATTTTTTTA
1 ATTTTTATA
74090333 CTATTTTTATA
1 --ATTTTTATA
74090344 ATTTTTA
1 ATTTTTA
74090351 ATATTTTAAA
Statistics
Matches: 99, Mismatches: 21, Indels: 24
0.69 0.15 0.17
Matches are distributed among these distances:
8 6 0.06
9 47 0.47
10 28 0.28
11 18 0.18
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.55
Consensus pattern (9 bp):
ATTTTTATA
Found at i:74090228 original size:19 final size:18
Alignment explanation
Indices: 74090204--74090253 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 18
74090194 ACTGAACTGC
74090204 TTAAATATTTTTATAATTT
1 TTAAATATTTTTAT-ATTT
74090223 TTAAATA-TTTTATATTT
1 TTAAATATTTTTATATTT
*
74090240 TAAAATAATTTTTA
1 TTAAAT-ATTTTTA
74090254 CCATTTTAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 9 0.32
18 7 0.25
19 12 0.43
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TTAAATATTTTTATATTT
Found at i:74090235 original size:18 final size:17
Alignment explanation
Indices: 74090204--74090251 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 17
74090194 ACTGAACTGC
74090204 TTAAATATTTTTATAATTT
1 TTAAATA-TTTTAT-ATTT
74090223 TTAAATATTTTATATTT
1 TTAAATATTTTATATTT
*
74090240 TAAAATAATTTT
1 TTAAAT-ATTTT
74090252 TACCATTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 9 0.33
18 11 0.41
19 7 0.26
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTAAATATTTTATATTT
Found at i:74090290 original size:10 final size:9
Alignment explanation
Indices: 74090275--74090350 Score: 53
Period size: 9 Copynumber: 7.9 Consensus size: 9
74090265 ATTCGTAACA
74090275 AATTTTTAAT
1 AATTTTT-AT
*
74090285 AATTTTTAC
1 AATTTTTAT
*
74090294 AACTTTTTAC
1 AA-TTTTTAT
*
74090304 AATTTTTAAG
1 AATTTTT-AT
**
74090314 AATGCTTAT
1 AATTTTTAT
*
74090323 AATTTTTTT
1 AATTTTTAT
74090332 ACTATTTTTAT
1 A--ATTTTTAT
74090343 AATTTTTA
1 AATTTTTA
74090351 ATATTTTAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 9
0.75 0.13 0.13
Matches are distributed among these distances:
9 23 0.43
10 22 0.42
11 8 0.15
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.58
Consensus pattern (9 bp):
AATTTTTAT
Found at i:74090295 original size:20 final size:19
Alignment explanation
Indices: 74090272--74090311 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
74090262 AGAATTCGTA
*
74090272 ACAAATTTTTAATAATTTTT
1 ACAAATTTTT-ACAATTTTT
*
74090292 ACAACTTTTTACAATTTTT
1 ACAAATTTTTACAATTTTT
74090311 A
1 A
74090312 AGAATGCTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.53
Consensus pattern (19 bp):
ACAAATTTTTACAATTTTT
Found at i:74090307 original size:29 final size:30
Alignment explanation
Indices: 74090275--74090350 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 30
74090265 ATTCGTAACA
74090275 AATTTTTAATAATTTTTACAA-CTTTTTAC
1 AATTTTTAATAATTTTTACAATCTTTTTAC
* ** * *
74090304 AATTTTTAAGAATGCTTATAATTTTTTTAC
1 AATTTTTAATAATTTTTACAATCTTTTTAC
*
74090334 TATTTTT-ATAATTTTTA
1 AATTTTTAATAATTTTTA
74090351 ATATTTTAAA
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
29 24 0.65
30 13 0.35
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.58
Consensus pattern (30 bp):
AATTTTTAATAATTTTTACAATCTTTTTAC
Found at i:74090368 original size:30 final size:30
Alignment explanation
Indices: 74090334--74090410 Score: 77
Period size: 31 Copynumber: 2.5 Consensus size: 30
74090324 ATTTTTTTAC
*
74090334 TATTTTTATAATTTTTAAT-ATTTTAAAA-
1 TATTTTTATAATTTTAAATAATTTTAAAAT
* *
74090362 TATATTTATATATTGTAAAATAATTTTAAAAT
1 TATTTTTATA-ATT-TTAAATAATTTTAAAAT
*
74090394 GATTTTTACTAATTTTA
1 TATTTTTA-TAATTTTA
74090411 TCAATTTTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
28 9 0.24
29 3 0.08
30 4 0.11
31 11 0.29
32 9 0.24
33 2 0.05
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (30 bp):
TATTTTTATAATTTTAAATAATTTTAAAAT
Found at i:74090389 original size:20 final size:21
Alignment explanation
Indices: 74090341--74090389 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
74090331 TACTATTTTT
*
74090341 ATAATTTT-TAATATTTTAAA
1 ATAATTTTATAATATTGTAAA
74090361 AT-ATATTTAT-ATATTGTAAA
1 ATAAT-TTTATAATATTGTAAA
74090381 ATAATTTTA
1 ATAATTTTA
74090390 AAATGATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
19 2 0.08
20 20 0.80
21 3 0.12
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (21 bp):
ATAATTTTATAATATTGTAAA
Found at i:74096961 original size:43 final size:43
Alignment explanation
Indices: 74096914--74097445 Score: 620
Period size: 43 Copynumber: 12.4 Consensus size: 43
74096904 ACGCAATTAA
* * *
74096914 ACTGGCACACACAGTGCATCATCGAATAATACCAAAGCAACAT
1 ACTGGCACACACAGTGCATCATTGGATAATACCGAAGCAACAT
* * * *
74096957 ACTGGCACACATAGTGCATTATTGGATAAAACCGAATCAACAT
1 ACTGGCACACACAGTGCATCATTGGATAATACCGAAGCAACAT
* * *
74097000 ACTGGCACATACAGTACATCATTGGATAATACCAAAGCAACAT
1 ACTGGCACACACAGTGCATCATTGGATAATACCGAAGCAACAT
* * * *
74097043 ATTGGCACACACAATGCATCATCGGGTAATACCGAAGCAACAT
1 ACTGGCACACACAGTGCATCATTGGATAATACCGAAGCAACAT
* * * *
74097086 ACAGGCGCACACAGTGCATCATTGGGTAATACCGAAGCAAGAT
1 ACTGGCACACACAGTGCATCATTGGATAATACCGAAGCAACAT
*
74097129 A-TCGGCACACACAGTGCATCATCAGG-TAATACCGAAGCAACAT
1 ACT-GGCACACACAGTGCATCAT-TGGATAATACCGAAGCAACAT
* * * * * *
74097172 ACTAGCTCACATAGTGCATCATCAGG-TAATACGGAAGAAACAT
1 ACTGGCACACACAGTGCATCAT-TGGATAATACCGAAGCAACAT
* * * * * *
74097215 ACTAGCACACATAGTGCATTATCGGTTAATACCAAAGCAACAT
1 ACTGGCACACACAGTGCATCATTGGATAATACCGAAGCAACAT
* * *
74097258 ACTGGCACACACAGTGTATCATTGGGTAATACCGAAGCAATAT
1 ACTGGCACACACAGTGCATCATTGGATAATACCGAAGCAACAT
* *
74097301 ACTGGCACATACAGTGCATCATTGGATAATATCGAAGCAACAT
1 ACTGGCACACACAGTGCATCATTGGATAATACCGAAGCAACAT
* * *
74097344 ACTGGCACAAATAGTGCATCATTGGATAATATCGAAGCAACAT
1 ACTGGCACACACAGTGCATCATTGGATAATACCGAAGCAACAT
* * *
74097387 ACTGGCACACATAGTGCATCATTGGATAATATCGAAGCAAGAT
1 ACTGGCACACACAGTGCATCATTGGATAATACCGAAGCAACAT
* *
74097430 ACTGACACATACAGTG
1 ACTGGCACACACAGTG
74097446 AGTCATCAGA
Statistics
Matches: 423, Mismatches: 62, Indels: 8
0.86 0.13 0.02
Matches are distributed among these distances:
42 2 0.00
43 418 0.99
44 3 0.01
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.21
Consensus pattern (43 bp):
ACTGGCACACACAGTGCATCATTGGATAATACCGAAGCAACAT
Found at i:74103630 original size:25 final size:24
Alignment explanation
Indices: 74103601--74103657 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 24
74103591 TTACTGATAC
*
74103601 ACAGCTCGCATGAGCTTACCATTAT
1 ACAGCTCGCAGGAGCTTACCATT-T
* * *
74103626 TCAGCTTGGAGGAGCTTACCATTT
1 ACAGCTCGCAGGAGCTTACCATTT
74103650 ACAGCTCG
1 ACAGCTCG
74103658 TAAGAGTATA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
24 7 0.27
25 19 0.73
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (24 bp):
ACAGCTCGCAGGAGCTTACCATTT
Found at i:74111376 original size:24 final size:25
Alignment explanation
Indices: 74111349--74111402 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
74111339 GTCATTAAGG
* *
74111349 TTACCAAT-TTCAGCTCATATGAGT
1 TTACCAATACTCAGCTCATATGAGC
* *
74111373 TTACCGATACTCAGCTCGTATGAGC
1 TTACCAATACTCAGCTCATATGAGC
74111398 TTACC
1 TTACC
74111403 GTTATTCAGC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 7 0.28
25 18 0.72
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (25 bp):
TTACCAATACTCAGCTCATATGAGC
Found at i:74111415 original size:25 final size:25
Alignment explanation
Indices: 74111357--74111471 Score: 94
Period size: 25 Copynumber: 4.6 Consensus size: 25
74111347 GGTTACCAAT
* * *
74111357 TTCAGCTCATATGAGTTTACCGATA
1 TTCAGCTCGTATGAGCTTACCGTTA
*
74111382 CTCAGCTCGTATGAGCTTACCGTTA
1 TTCAGCTCGTATGAGCTTACCGTTA
* *
74111407 TTCAGCTCGGAGGAGCTTACC-TT-
1 TTCAGCTCGTATGAGCTTACCGTTA
* * *
74111430 TTACAGCTTGTAAGAGCATACCG--A
1 TT-CAGCTCGTATGAGCTTACCGTTA
74111454 TTCGGAGCTCGTATGAGC
1 TTC--AGCTCGTATGAGC
74111472 ATACATGTAC
Statistics
Matches: 72, Mismatches: 13, Indels: 10
0.76 0.14 0.11
Matches are distributed among these distances:
23 3 0.04
24 19 0.26
25 50 0.69
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (25 bp):
TTCAGCTCGTATGAGCTTACCGTTA
Found at i:74121824 original size:45 final size:45
Alignment explanation
Indices: 74121743--74121834 Score: 130
Period size: 45 Copynumber: 2.0 Consensus size: 45
74121733 AGTGTCCGTG
* *
74121743 ATTATGTACTTGCTTATATGATTATACGTCTATATGATTGCACGA
1 ATTATGTACTTGCTTATACGAATATACGTCTATATGATTGCACGA
* * * *
74121788 ATTATGTACTTGTTTATACGAATGTACTTCTGTATGATTGCACGA
1 ATTATGTACTTGCTTATACGAATATACGTCTATATGATTGCACGA
74121833 AT
1 AT
74121835 AGAAGTGCCA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.28, C:0.13, G:0.16, T:0.42
Consensus pattern (45 bp):
ATTATGTACTTGCTTATACGAATATACGTCTATATGATTGCACGA
Found at i:74122691 original size:25 final size:25
Alignment explanation
Indices: 74122647--74122700 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
74122637 CAAAATTTAG
74122647 AAATAAAATTATTTTGTAAT-TAATT
1 AAATAAAATTATTTTGTAATCT-ATT
*
74122672 AAATAGAATTATTTAT-TAATCTATT
1 AAATAAAATTATTT-TGTAATCTATT
74122697 AAAT
1 AAAT
74122701 TGGTTATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 24 0.92
26 2 0.08
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (25 bp):
AAATAAAATTATTTTGTAATCTATT
Found at i:74144691 original size:20 final size:20
Alignment explanation
Indices: 74144663--74144701 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
74144653 ATAGTATTTT
74144663 ATTAATTTAATATTAAATTG
1 ATTAATTTAATATTAAATTG
*
74144683 ATTATTTTAATATTAAATT
1 ATTAATTTAATATTAAATT
74144702 AAATAAATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (20 bp):
ATTAATTTAATATTAAATTG
Found at i:74146804 original size:73 final size:73
Alignment explanation
Indices: 74146713--74146853 Score: 221
Period size: 73 Copynumber: 1.9 Consensus size: 73
74146703 ACAAAGATAA
* ** *
74146713 TAATTAGTGAATCTTTATTGTTTTTCCGTTCAAATATGTCTCAT-ACTCCTCTTATTAGCATTCT
1 TAATTAGTGAATCTTTATTATTTTTCAATTCAAATATGTCTC-TCACTCCTCTTATTAGCATACT
74146777 TACTAAGAC
65 TACTAAGAC
*
74146786 TAATTAGTGAATCTTTATTATTTTTCAATTTAAATATGTCTCTCACTCCTCTTATTAGCATACTT
1 TAATTAGTGAATCTTTATTATTTTTCAATTCAAATATGTCTCTCACTCCTCTTATTAGCATACTT
74146851 ACT
66 ACT
74146854 GAGAATAAAT
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
72 1 0.02
73 61 0.98
ACGTcount: A:0.27, C:0.18, G:0.08, T:0.47
Consensus pattern (73 bp):
TAATTAGTGAATCTTTATTATTTTTCAATTCAAATATGTCTCTCACTCCTCTTATTAGCATACTT
ACTAAGAC
Found at i:74150250 original size:12 final size:11
Alignment explanation
Indices: 74150224--74150257 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
74150214 TAGACCCAGG
74150224 ATGAATTAATT
1 ATGAATTAATT
*
74150235 ATGAATTCATTT
1 ATGAATT-AATT
74150247 ATGAATTAATT
1 ATGAATTAATT
74150258 CACTTGTGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.41, C:0.03, G:0.09, T:0.47
Consensus pattern (11 bp):
ATGAATTAATT
Found at i:74155889 original size:18 final size:19
Alignment explanation
Indices: 74155863--74155905 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
74155853 TTTCCCAAAA
74155863 TAAATATT-ATTTACTAAAT
1 TAAATATTAATTTACT-AAT
*
74155882 TAAA-ATTAATTTTCTAAT
1 TAAATATTAATTTACTAAT
74155900 TAAATA
1 TAAATA
74155906 ATTTTCTCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.47
Consensus pattern (19 bp):
TAAATATTAATTTACTAAT
Found at i:74159244 original size:21 final size:20
Alignment explanation
Indices: 74159199--74159245 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 20
74159189 ATTAAAATAT
* *
74159199 AAAA-ATCAAAAAATTTTAT
1 AAAATATCAAAAAATTATAA
*
74159218 AGAATATCATAAAAATTATAA
1 AAAATATCA-AAAAATTATAA
74159239 AAAATAT
1 AAAATAT
74159246 TTTTAAAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 3 0.14
20 4 0.18
21 15 0.68
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (20 bp):
AAAATATCAAAAAATTATAA
Found at i:74159293 original size:35 final size:34
Alignment explanation
Indices: 74159254--74159326 Score: 85
Period size: 35 Copynumber: 2.1 Consensus size: 34
74159244 ATTTTTAAAA
*
74159254 ATAAAATAT-ATATAAAAGTAAAAAAATAGGAAATT
1 ATAAAAT-TCATATAAAAGAAAAAAAATA-GAAATT
* * *
74159289 ATAAAATTCTTATAAATGAAAAAAAATATAAATT
1 ATAAAATTCATATAAAAGAAAAAAAATAGAAATT
74159323 ATAA
1 ATAA
74159327 GAAATGGAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
34 10 0.30
35 23 0.70
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.29
Consensus pattern (34 bp):
ATAAAATTCATATAAAAGAAAAAAAATAGAAATT
Found at i:74159553 original size:40 final size:39
Alignment explanation
Indices: 74159470--74159561 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 39
74159460 GAAAAGTGCA
**
74159470 AAAAATA-TAAAAAAATAGAAAATTACAGTAATATTATT
1 AAAAATATTAAAAAAATAGAAAATTACAAAAATATTATT
*
74159508 AAAAATATTCAAAAAAATATAAAATTACAAAAAGTA-TA-T
1 AAAAATATT-AAAAAAATAGAAAATTACAAAAA-TATTATT
74159547 ATAAAATA-TAAAAAA
1 A-AAAATATTAAAAAA
74159562 TGTCTATAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
38 13 0.28
39 4 0.09
40 28 0.60
41 2 0.04
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.26
Consensus pattern (39 bp):
AAAAATATTAAAAAAATAGAAAATTACAAAAATATTATT
Found at i:74159822 original size:10 final size:10
Alignment explanation
Indices: 74159809--74159837 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
74159799 AAATTTTTCC
74159809 AAATATTTTT
1 AAATATTTTT
74159819 AAATATTTTT
1 AAATATTTTT
74159829 AAATATTTT
1 AAATATTTT
74159838 ATGCTTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
AAATATTTTT
Found at i:74159904 original size:9 final size:9
Alignment explanation
Indices: 74159892--74160082 Score: 90
Period size: 10 Copynumber: 20.6 Consensus size: 9
74159882 TTATTAAAAC
*
74159892 TTTTAATAA
1 TTTTTATAA
74159901 TTTTTAT-A
1 TTTTTATAA
74159909 -TTTTATATA
1 TTTTTATA-A
74159918 TTTTTATAA
1 TTTTTATAA
*
74159927 TTTTTTACAA
1 -TTTTTATAA
*
74159937 TTTTTTTTATA
1 -TTTTTATA-A
74159948 TTTTTCATAA
1 TTTTT-ATAA
* *
74159958 TTTATATAT
1 TTTTTATAA
74159967 TTTTTATAA
1 TTTTTATAA
*
74159976 --TTTATAT
1 TTTTTATAA
74159983 TTATTTATAATA
1 TT-TTTAT-A-A
*
74159995 TTTTTGTAA
1 TTTTTATAA
74160004 TTTTTTAATAA
1 -TTTTT-ATAA
**
74160015 AATTTATAA
1 TTTTTATAA
*
74160024 TTTATATAAA
1 TTTTTAT-AA
74160034 TTTTT-TCAA
1 TTTTTAT-AA
* *
74160043 TTATAATAA
1 TTTTTATAA
* *
74160052 ATTTTACAA
1 TTTTTATAA
74160061 TTTTCTAT-A
1 TTTT-TATAA
74160070 -TTTTATAA
1 TTTTTATAA
74160078 TTTTT
1 TTTTT
74160083 GCGCTTTATA
Statistics
Matches: 136, Mismatches: 28, Indels: 36
0.68 0.14 0.18
Matches are distributed among these distances:
7 15 0.11
8 5 0.04
9 48 0.35
10 55 0.40
11 11 0.08
12 2 0.01
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.63
Consensus pattern (9 bp):
TTTTTATAA
Found at i:74159944 original size:39 final size:40
Alignment explanation
Indices: 74159901--74160010 Score: 122
Period size: 39 Copynumber: 2.9 Consensus size: 40
74159891 CTTTTAATAA
74159901 TTTTTATATTTTAT-ATATTTTTATAATTTTTTACAATTT
1 TTTTTATATTTTATAATATTTTTATAATTTTTTACAATTT
* * *
74159940 TTTTTATATTTT-TCATA-ATTTATATATTTTTTATAATTT
1 TTTTTATATTTTATAATATTTTTATA-ATTTTTTACAATTT
* * *
74159979 ATATT-TA-TTTATAATATTTTTGTAATTTTTTA
1 TTTTTATATTTTATAATATTTTTATAATTTTTTA
74160011 ATAAAATTTA
Statistics
Matches: 60, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
37 3 0.05
38 21 0.35
39 36 0.60
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.68
Consensus pattern (40 bp):
TTTTTATATTTTATAATATTTTTATAATTTTTTACAATTT
Found at i:74159959 original size:21 final size:22
Alignment explanation
Indices: 74159918--74159960 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
74159908 ATTTTATATA
*
74159918 TTTTTATAATTTTTTACAATTT
1 TTTTTATAATTTTTCACAATTT
*
74159940 TTTTTAT-ATTTTTCATAATTT
1 TTTTTATAATTTTTCACAATTT
74159961 ATATATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.70
Consensus pattern (22 bp):
TTTTTATAATTTTTCACAATTT
Found at i:74160024 original size:66 final size:66
Alignment explanation
Indices: 74159893--74160038 Score: 165
Period size: 66 Copynumber: 2.2 Consensus size: 66
74159883 TATTAAAACT
* * **
74159893 TTTA-ATAATTTTTATATTTTATATATTTTTATAATTTTTTACAATTTTTTTTATATTTTTCATA
1 TTTATATAATTTTTATAATTTATATATTTTTATAATTTTTTACAATTTTTTATATAAATTTCATA
74159957 A
66 A
* **
74159958 TTTATATATTTTTTATAATTTATAT-TTATTTATAATATTTTTGTAATTTTTTA-ATAAAATTT-
1 TTTATATAATTTTTATAATTTATATATT-TTTATAAT-TTTTTACAATTTTTTATAT-AAATTTC
74160020 ATAA
63 ATAA
74160024 TTTATATAAATTTTT
1 TTTATAT-AATTTTT
74160039 TCAATTATAA
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
65 6 0.09
66 39 0.57
67 23 0.34
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (66 bp):
TTTATATAATTTTTATAATTTATATATTTTTATAATTTTTTACAATTTTTTATATAAATTTCATA
A
Found at i:74160100 original size:9 final size:9
Alignment explanation
Indices: 74159813--74160082 Score: 97
Period size: 9 Copynumber: 28.7 Consensus size: 9
74159803 TTTTCCAAAT
*
74159813 ATTTTTAAA
1 ATTTTTATA
74159822 TATTTTTA-A
1 -ATTTTTATA
*
74159831 ATATTTTATG
1 AT-TTTTATA
* *
74159841 CTTTTTATG
1 ATTTTTATA
* *
74159850 CTTTTTATG
1 ATTTTTATA
*
74159859 TTTTTTATA
1 ATTTTTATA
*
74159868 ATATTTTGTTA
1 AT-TTTT-ATA
*
74159879 ATTTTATTAAA
1 A-TTT-TTATA
*
74159890 ACTTTTAATA
1 A-TTTTTATA
74159900 ATTTTTAT-
1 ATTTTTATA
74159908 A-TTTTATA
1 ATTTTTATA
74159916 TATTTTTATA
1 -ATTTTTATA
*
74159926 ATTTTTTACA
1 A-TTTTTATA
*
74159936 ATTTTTTTTA
1 A-TTTTTATA
74159946 TATTTTTCATA
1 -ATTTTT-ATA
*
74159957 ATTTATATA
1 ATTTTTATA
*
74159966 TTTTTTATA
1 ATTTTTATA
74159975 A--TTTATA
1 ATTTTTATA
*
74159982 TTTATTTATAA
1 ATT-TTTAT-A
*
74159993 TATTTTTGTA
1 -ATTTTTATA
74160003 ATTTTTTAATA
1 A-TTTTT-ATA
**
74160014 AAATTTATA
1 ATTTTTATA
*
74160023 ATTTATATAA
1 ATTTTTAT-A
74160033 ATTTTT-TCA
1 ATTTTTAT-A
* *
74160042 ATTATAATA
1 ATTTTTATA
* *
74160051 AATTTTACA
1 ATTTTTATA
74160060 ATTTTCTAT-
1 ATTTT-TATA
74160069 A-TTTTATA
1 ATTTTTATA
74160077 ATTTTT
1 ATTTTT
74160083 GCGCTTTATA
Statistics
Matches: 197, Mismatches: 39, Indels: 49
0.69 0.14 0.17
Matches are distributed among these distances:
7 15 0.08
8 7 0.04
9 78 0.40
10 71 0.36
11 21 0.11
12 5 0.03
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.63
Consensus pattern (9 bp):
ATTTTTATA
Found at i:74160271 original size:38 final size:38
Alignment explanation
Indices: 74160220--74160294 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
74160210 TGACTATTAG
74160220 CTTTAATGGTAAAAGGGCTTAATTGATTGAAATGTTAA
1 CTTTAATGGTAAAAGGGCTTAATTGATTGAAATGTTAA
74160258 CTTTAATGGTAAAAGGGCTTAATTGATTGAAATGTTA
1 CTTTAATGGTAAAAGGGCTTAATTGATTGAAATGTTA
74160295 TCATTCGAGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.37
Consensus pattern (38 bp):
CTTTAATGGTAAAAGGGCTTAATTGATTGAAATGTTAA
Found at i:74170388 original size:23 final size:24
Alignment explanation
Indices: 74170330--74170389 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 24
74170320 AAGAAGTCAC
74170330 TACAATATACTTTTTTAAACATTG
1 TACAATATACTTTTTTAAACATTG
* *
74170354 TATAAATATACTTTTTCT-AATATTG
1 TA-CAATATACTTTTT-TAAACATTG
74170379 TACAAT-TACTT
1 TACAATATACTT
74170390 GATTATGATT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
23 5 0.16
24 5 0.16
25 20 0.65
26 1 0.03
ACGTcount: A:0.37, C:0.12, G:0.03, T:0.48
Consensus pattern (24 bp):
TACAATATACTTTTTTAAACATTG
Found at i:74175605 original size:29 final size:29
Alignment explanation
Indices: 74175550--74175606 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
74175540 TGGGCATTTC
* *
74175550 CACACGGGCCGGCCACACGCCCGTGTGCG
1 CACACAGGCCGGCCACACGCCCATGTGCG
* * *
74175579 CACACAGGCTGGCCACATGCCTATGTGC
1 CACACAGGCCGGCCACACGCCCATGTGC
74175607 CAGCCCGTGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.18, C:0.40, G:0.30, T:0.12
Consensus pattern (29 bp):
CACACAGGCCGGCCACACGCCCATGTGCG
Found at i:74177817 original size:47 final size:47
Alignment explanation
Indices: 74177671--74177846 Score: 176
Period size: 47 Copynumber: 3.7 Consensus size: 47
74177661 GCAGATTATC
* * ** *
74177671 TGCTCGACCAGTGGTTTATCCACAATGTATTTTAGGCGGCAGTCACC
1 TGCTCGACCAATGGTTTATCCACAATGTATTTTAGTCAACAGTCACT
** * * * * *
74177718 TGCTTAACCAGTAGTTTATCCACAATGTATCTTAGTTAACAGTTA-T
1 TGCTCGACCAATGGTTTATCCACAATGTATTTTAGTCAACAGTCACT
*
74177764 CTGCTCGACCAATGGTTTATCCATAATGTATTTTAGTCAACAGTCACT
1 -TGCTCGACCAATGGTTTATCCACAATGTATTTTAGTCAACAGTCACT
* **
74177812 TGCTCGACTAAT-GTTATATCCACAACATATTTTAG
1 TGCTCGACCAATGGTT-TATCCACAATGTATTTTAG
74177847 CAGCTTTTAT
Statistics
Matches: 104, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
46 3 0.03
47 100 0.96
48 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (47 bp):
TGCTCGACCAATGGTTTATCCACAATGTATTTTAGTCAACAGTCACT
Found at i:74177832 original size:94 final size:94
Alignment explanation
Indices: 74177666--74177836 Score: 236
Period size: 94 Copynumber: 1.8 Consensus size: 94
74177656 ATTTGGCAGA
* ** * *
74177666 TTATCTGCTCGACCAGTGGTTTATCCACAATGTATTTTAGGCGGCAGTCACCTGCTTAACCAGTA
1 TTATCTGCTCGACCAATGGTTTATCCACAATGTATTTTAGGCAACAGTCACCTGCTCAACCAATA
74177731 GTTTATCCACAATGTATCTTAGTTAACAG
66 GTTTATCCACAATGTATCTTAGTTAACAG
* * * * *
74177760 TTATCTGCTCGACCAATGGTTTATCCATAATGTATTTTAGTCAACAGTCACTTGCTCGACTAAT-
1 TTATCTGCTCGACCAATGGTTTATCCACAATGTATTTTAGGCAACAGTCACCTGCTCAACCAATA
74177824 GTTATATCCACAA
66 GTT-TATCCACAA
74177837 CATATTTTAG
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
93 3 0.05
94 63 0.95
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (94 bp):
TTATCTGCTCGACCAATGGTTTATCCACAATGTATTTTAGGCAACAGTCACCTGCTCAACCAATA
GTTTATCCACAATGTATCTTAGTTAACAG
Found at i:74179217 original size:21 final size:21
Alignment explanation
Indices: 74179180--74179222 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
74179170 CGTCTATCTT
74179180 TTTTATTTTCTTCTTTA-TTA
1 TTTTATTTTCTTCTTTACTTA
74179200 TTTTATTGTTCTAT-TTTACTTA
1 TTTTATT-TTCT-TCTTTACTTA
74179222 T
1 T
74179223 CTTAGTTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 7 0.35
21 8 0.40
22 5 0.25
ACGTcount: A:0.16, C:0.09, G:0.02, T:0.72
Consensus pattern (21 bp):
TTTTATTTTCTTCTTTACTTA
Found at i:74179260 original size:12 final size:13
Alignment explanation
Indices: 74179237--74179261 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74179227 GTTTATTTAT
74179237 TTCAATTTTTTTG
1 TTCAATTTTTTTG
74179250 TTCAATTTTTTT
1 TTCAATTTTTTT
74179262 ATCTGACTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.08, G:0.04, T:0.72
Consensus pattern (13 bp):
TTCAATTTTTTTG
Found at i:74181927 original size:28 final size:25
Alignment explanation
Indices: 74181881--74181934 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 25
74181871 TTGATTATTA
74181881 TTCAACTTTTTTTTAAGTTTTCCTTT
1 TTCAACTTTTTTTTAAGTTTT-CTTT
*
74181907 TTCAACTATTTTTCTTGAGTTTTCTTT
1 TTCAACT-TTTTT-TTAAGTTTTCTTT
74181934 T
1 T
74181935 AGAATAGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 7 0.28
27 10 0.40
28 8 0.32
ACGTcount: A:0.15, C:0.15, G:0.06, T:0.65
Consensus pattern (25 bp):
TTCAACTTTTTTTTAAGTTTTCTTT
Found at i:74182487 original size:16 final size:18
Alignment explanation
Indices: 74182461--74182497 Score: 60
Period size: 16 Copynumber: 2.2 Consensus size: 18
74182451 TGTTTTCTAT
74182461 ATATATTTTTAATTTT-A
1 ATATATTTTTAATTTTGA
74182478 ATAT-TTTTTAATTTTGA
1 ATATATTTTTAATTTTGA
74182495 ATA
1 ATA
74182498 AACATTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (18 bp):
ATATATTTTTAATTTTGA
Found at i:74182809 original size:23 final size:22
Alignment explanation
Indices: 74182779--74182826 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
74182769 TATTATCAAT
74182779 TATTTTTTTAAATCTATAAAAAA
1 TATTTTTTTAAATC-ATAAAAAA
* *
74182802 TA-TTTTTTAATTCCTAAAAAA
1 TATTTTTTTAAATCATAAAAAA
74182823 TATT
1 TATT
74182827 AAAGGTACGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 9 0.41
22 11 0.50
23 2 0.09
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (22 bp):
TATTTTTTTAAATCATAAAAAA
Found at i:74182810 original size:22 final size:21
Alignment explanation
Indices: 74182782--74182826 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
74182772 TATCAATTAT
74182782 TTTTTTAAATCTATAAAAAATA
1 TTTTTTAAATC-ATAAAAAATA
* *
74182804 TTTTTTAATTCCTAAAAAATA
1 TTTTTTAAATCATAAAAAATA
74182825 TT
1 TT
74182827 AAAGGTACGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (21 bp):
TTTTTTAAATCATAAAAAATA
Found at i:74189165 original size:13 final size:14
Alignment explanation
Indices: 74189146--74189196 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 14
74189136 TCGTAGCTTC
74189146 GAAAAAAAAAAGTT
1 GAAAAAAAAAAGTT
**
74189160 -AAAAAAAAATTTT
1 GAAAAAAAAAAGTT
*
74189173 GAAAAAAAAAA-TCC
1 GAAAAAAAAAAGT-T
74189187 GAAAAAAAAA
1 GAAAAAAAAA
74189197 GAAGGAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
13 12 0.39
14 19 0.61
ACGTcount: A:0.75, C:0.04, G:0.08, T:0.14
Consensus pattern (14 bp):
GAAAAAAAAAAGTT
Found at i:74189177 original size:14 final size:14
Alignment explanation
Indices: 74189146--74189224 Score: 60
Period size: 13 Copynumber: 5.8 Consensus size: 14
74189136 TCGTAGCTTC
*
74189146 GAAAAAAAAAAGTT
1 GAAAAAAAAAATTT
*
74189160 -AAAAAAAAATTTT
1 GAAAAAAAAAATTT
**
74189173 GAAAAAAAAAATCC
1 GAAAAAAAAAATTT
74189187 G-AAAAAAAAA---
1 GAAAAAAAAAATTT
74189197 GAAGGAAAAAAAATTT
1 GAA--AAAAAAAATTT
74189213 GCAAAAAAAAAA
1 G-AAAAAAAAAA
74189225 AATTGCATAC
Statistics
Matches: 52, Mismatches: 5, Indels: 15
0.72 0.07 0.21
Matches are distributed among these distances:
10 1 0.02
11 1 0.02
13 28 0.54
14 11 0.21
15 8 0.15
16 1 0.02
17 2 0.04
ACGTcount: A:0.73, C:0.04, G:0.10, T:0.13
Consensus pattern (14 bp):
GAAAAAAAAAATTT
Found at i:74191512 original size:24 final size:25
Alignment explanation
Indices: 74191485--74191538 Score: 60
Period size: 23 Copynumber: 2.2 Consensus size: 25
74191475 ATGAGTGATA
*
74191485 AAAAAAGAGA-GAGTGATTCAAAA-G
1 AAAAAAGAAACGAGTGA-TCAAAATG
*
74191509 -AAAAAGAAACGAGTGATGAAAATG
1 AAAAAAGAAACGAGTGATCAAAATG
74191533 AAAAAA
1 AAAAAA
74191539 AGAATTTGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 13 0.52
24 7 0.28
25 5 0.20
ACGTcount: A:0.63, C:0.04, G:0.22, T:0.11
Consensus pattern (25 bp):
AAAAAAGAAACGAGTGATCAAAATG
Found at i:74199230 original size:27 final size:27
Alignment explanation
Indices: 74199200--74199377 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
74199190 ATATTGAGTC
* * * *
74199200 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
74199227 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
74199254 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
74199282 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
74199309 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
74199336 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
74199363 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74199378 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:74199339 original size:82 final size:81
Alignment explanation
Indices: 74199221--74199376 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
74199211 TGCTATATAA
* *
74199221 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
74199286 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
74199303 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
74199367 CACTTAGTGC
65 CACTTAGTGC
74199377 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:74207768 original size:53 final size:53
Alignment explanation
Indices: 74207687--74207794 Score: 155
Period size: 53 Copynumber: 2.0 Consensus size: 53
74207677 AGTAGCACAT
* *
74207687 ATCACACCGATGCCATATCCCAAATATGGTCTTATACGAAAA-CTCATAATCAC
1 ATCACACCGATGCCATAGCCCAAATATGGTCTTATACGAAAATCACAT-ATCAC
** *
74207740 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACATATCAC
1 ATCACACCGATGCCATAGCCCAAATATGGTCTTATACGAAAATCACATATCAC
74207793 AT
1 AT
74207795 GTTGCCATGG
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
53 45 0.92
54 4 0.08
ACGTcount: A:0.35, C:0.29, G:0.12, T:0.24
Consensus pattern (53 bp):
ATCACACCGATGCCATAGCCCAAATATGGTCTTATACGAAAATCACATATCAC
Found at i:74214817 original size:130 final size:130
Alignment explanation
Indices: 74214642--74215536 Score: 1337
Period size: 130 Copynumber: 6.9 Consensus size: 130
74214632 GTTTCTTCTG
* * *
74214642 TCTGCTCCACTACAACTTCAGAGAGATAAGACCTGTGGTTTTAAATCCGCTCCACTGCAACTTCA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAAATCCGCTCCACTGCAACTTCA
*
74214707 AGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGA
66 AGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGA
* * *
74214772 TCTGCTCTACTACAACTTCAGAGAGATAAGGTATGTGGTTTTAAATCCGCTCCACTGCAACTTCA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAAATCCGCTCCACTGCAACTTCA
* * * *
74214837 GGGAGATAGAATTGGCTTCTTCTGTCTGCTCCACT--ACCTTCAGGGAGATAAGATTGGATGCGA
66 AGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGA
* *
74214900 TCTGCTCTACTGCAACTTTAGAGAGATAATATCTGTGGTTTTAAATCCGCTCCACTGCAACTTC-
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAAATCCGCTCCACTGCAACTTCA
* *
74214964 AGGAAGATAGGATTGGATTCTTCTATCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCG
66 AGG-AGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCG
74215029 A
130 A
* * * *
74215030 TCTACTCTACTGCAACTTCAGAGAGATAAGATATGTGGTTTTAAATTCGCTCCACTACAACTTCA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAAATCCGCTCCACTGCAACTTCA
* * *
74215095 AGGAGATAGGATTGGCTTCTTCTGTCTACTCCATTGCAACTTCAGGGAGATAAGACTGGATTCGA
66 AGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGA
* * *
74215160 TCTGCTCTACTGCAACTTCAAAGAGATAAGATTTGTGGTTTTAAATCTGCTCCACTGCAACTTCA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAAATCCGCTCCACTGCAACTTCA
* * * * *
74215225 GGGAGATAGGATTGACTTCTTCTGTCTGCTCCACTGCAACGTCAGGGAGATAAGACTAGATGTGA
66 AGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGA
* * * * *
74215290 TATGCTTTACTGCAACTTTAGAGAGATAAGATCTGTGGTTTTAAATCCGATCCACTGCAACTTTA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAAATCCGCTCCACTGCAACTTCA
* * * * *
74215355 GGGAGATAGGATTGGCTTCTTCTTTCTGCTCTACTGCAACTTCAGGGAGATAAGACTAGATGCAA
66 AGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGA
** * *
74215420 TCTGCTCTACTAAAATTTCAGAAAGATAAGATCTGTGGTTTTAAATCCGCTCCACTGCAACTTCA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAAATCCGCTCCACTGCAACTTCA
* * *
74215485 AGGAGATAGGATTGGCTTCTTTTGTCTGTTCCACTGCAACTTTAGGGAGATA
66 AGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATA
74215537 GGATTATTGT
Statistics
Matches: 687, Mismatches: 74, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
127 2 0.00
128 113 0.16
130 569 0.83
131 3 0.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (130 bp):
TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAAATCCGCTCCACTGCAACTTCA
AGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGA
Found at i:74224570 original size:25 final size:25
Alignment explanation
Indices: 74224542--74224603 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
74224532 TTACAGTTCT
74224542 TATGAGCTTCCCGATATACAACTCA
1 TATGAGCTTCCCGATATACAACTCA
* *
74224567 TATGAGCTTCCCGTTATACAGCTCA
1 TATGAGCTTCCCGATATACAACTCA
* *
74224592 GAAGAGCTTCCC
1 TATGAGCTTCCC
74224604 ATTTACATGC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (25 bp):
TATGAGCTTCCCGATATACAACTCA
Found at i:74232046 original size:50 final size:50
Alignment explanation
Indices: 74231964--74232074 Score: 123
Period size: 50 Copynumber: 2.2 Consensus size: 50
74231954 ACAACTCTCT
** * * * * * *
74231964 TGAGCTTCCCGATATTTGGCTCGCATAAGCTTCTCAATTTACAGTTCTTA
1 TGAGCTTCCCGATAAATGGCCCACATAAGCTTCCCAATCTACAGCTCGTA
* * *
74232014 TGAGCTTCCTGATAAATGGCCCACATGAGCTTCCCGATCTACAGCTCGTA
1 TGAGCTTCCCGATAAATGGCCCACATAAGCTTCCCAATCTACAGCTCGTA
74232064 TGAGCTTCCCG
1 TGAGCTTCCCG
74232075 TTTACATGCT
Statistics
Matches: 49, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.32
Consensus pattern (50 bp):
TGAGCTTCCCGATAAATGGCCCACATAAGCTTCCCAATCTACAGCTCGTA
Found at i:74232066 original size:25 final size:25
Alignment explanation
Indices: 74232038--74232093 Score: 87
Period size: 25 Copynumber: 2.2 Consensus size: 25
74232028 AATGGCCCAC
74232038 ATGAGCTTCCCGATCTACA-GCTCGT
1 ATGAGCTTCCCG-TCTACATGCTCGT
*
74232063 ATGAGCTTCCCGTTTACATGCTCGT
1 ATGAGCTTCCCGTCTACATGCTCGT
74232088 ATGAGC
1 ATGAGC
74232094 ATACATGTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 5 0.17
25 24 0.83
ACGTcount: A:0.20, C:0.29, G:0.21, T:0.30
Consensus pattern (25 bp):
ATGAGCTTCCCGTCTACATGCTCGT
Found at i:74241610 original size:23 final size:24
Alignment explanation
Indices: 74241564--74241640 Score: 77
Period size: 23 Copynumber: 3.3 Consensus size: 24
74241554 AGATATATAA
* **
74241564 AATAATACATAATAAA-TTTGAAT
1 AATAATACATGATAAACTTAAAAT
74241587 AATAATACATGA-AAACTTAAAAT
1 AATAATACATGATAAACTTAAAAT
* * **
74241610 AATTATATATGATAATTTTAAAAT
1 AATAATACATGATAAACTTAAAAT
74241634 AATAATA
1 AATAATA
74241641 TGCAATAAAT
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
22 3 0.07
23 26 0.59
24 15 0.34
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (24 bp):
AATAATACATGATAAACTTAAAAT
Found at i:74241648 original size:24 final size:24
Alignment explanation
Indices: 74241575--74241655 Score: 71
Period size: 24 Copynumber: 3.5 Consensus size: 24
74241565 ATAATACATA
* * *
74241575 ATAAATTT-GAATAATAATACATG
1 ATAAATTTAAAATAATTATATATG
*
74241598 A-AAACTTAAAATAATTATATATG
1 ATAAATTTAAAATAATTATATATG
*
74241621 ATAATTTTAAAATAA-TA-ATATG
1 ATAAATTTAAAATAATTATATATG
74241643 CAATAAATTTAAA
1 --ATAAATTTAAA
74241656 CAATATTAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
22 10 0.21
23 16 0.34
24 21 0.45
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.36
Consensus pattern (24 bp):
ATAAATTTAAAATAATTATATATG
Found at i:74254799 original size:44 final size:43
Alignment explanation
Indices: 74254746--74255802 Score: 490
Period size: 44 Copynumber: 23.8 Consensus size: 43
74254736 TCATCGTTTT
* *
74254746 AATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGCAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-GCAGCTTC
* * *
74254790 AATCTGCTCCACTACAACTTCAAGGAGATAAGGTTTG-A--TAT-
1 AATCTGCTCCACTGCAACTTCAGGGAGATAA-GATTGCAGCT-TC
* * * *
74254831 GATC-GTCTCTACTGCAACTTCAGAGAGATAAGATCTACAATTTATAGCTTC
1 AATCTG-CTCCACTGCAACTTCAGGGAGATAAGAT-TGC-------AGCTTC
* * * ** *
74254882 AACCTGTTCCACCGCAGTTTCAGGGAAATAAGATT-CA-CTATC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGCAGCT-TC
74254924 ATTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-C-GCTTC
1 A--A-TCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGCAGCTTC
* * * *** *
74254969 AATCCGCTCCACTACAACTTCAGGGAGATAGGATTATTGGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-GCAGCTTC
* * * * * * * *
74255013 AATCTACTCTACTACAAATTTAGGGAGATCAGATTTTCCATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA--TTGCAGCTTC
* * * * * **
74255058 AGTCTGCCCCAAT-CTAACTTTAGGGGGATAAGACTTGCTCTCTTC
1 AATCTGCTCCACTGC-AACTTCAGGGAGATAAGA-TTGC-AGCTTC
* * *
74255103 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTAG-TTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTG-CAGCTTC
* *** *
74255147 AATCTGCTCCACTGCAACTTCTA-GGAGATAGGATTATTGGCTTT
1 AATCTGCTCCACTGCAACTTC-AGGGAGATAAGATT-GCAGCTTC
* * * *
74255191 AATCTGCTACACTACAACTTCAGGGTGATAAGATTTGCCATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTG-CAGCTTC
* * * * * *
74255236 AGTCTGCCCCACTGCAACTTCAGGGGGATAAGACTTGTAACTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGCAGCTTC
** * * *
74255280 AATCTGCTCCACTGCAACTTCAAAGAGATAAGACTTGTAACTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGCAGCTTC
* * *** *
74255324 AATCCT-CTCCACTGCAACTTTAGGGAGATAGGATTATTGGCTTT
1 AAT-CTGCTCCACTGCAACTTCAGGGAGATAAGATT-GCAGCTTC
* * * * * *
74255368 AACCTACTCCATTGCAACTTTAAGGAGATAAGATTCGCCATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-G-CAGCTTC
* * * * * **
74255413 AGTCTACCCCACTGTAACTTCAGGGGGATAAGACTTGCTTTCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGC-AGCTTC
* * * * * * *
74255458 AGTCTGTTACACTGCAACTTTAGGGAGATAAGACTTGTAACTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGCAGCTTC
* * *
74255502 AATATGCTCCACTGCAACTTCAGGGAGATAGAATTATTG--GCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGAT--AA-GATTGCAGCTTC
* * *** *
74255546 AATCTGCTCCACTGTAACTTCAGGGAGATAGGATTATTGGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-GCAGCTTC
** *
74255590 AATCTGCTCCACTGCAACTTCAGGGAGATAAGAATCACCATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAG-AT-TGCAGCTTC
* * * * **
74255635 AGTCTGCCCCACCGCAACTTCAAAGG-GATAAGACTTGCTTTCTTC
1 AATCTGCTCCACTGCAACTTC-AGGGAGATAAGA-TTGC-AGCTTC
* * ** * * *
74255680 AGTCTGCTCCATTGCAACTTCAGTAAGATAAGACTTGTAACTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGCAGCTTC
* * * *** *
74255724 AATCCGCTCCACTGCAACTTCAAGGAGATAGGATTATTGGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-GCAGCTTC
*
74255768 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
74255803 CATCATCTTC
Statistics
Matches: 779, Mismatches: 178, Indels: 112
0.73 0.17 0.10
Matches are distributed among these distances:
40 3 0.00
41 33 0.04
42 34 0.04
43 13 0.02
44 388 0.50
45 260 0.33
46 18 0.02
47 1 0.00
49 2 0.00
50 2 0.00
51 24 0.03
52 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (43 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGCAGCTTC
Found at i:74255234 original size:178 final size:178
Alignment explanation
Indices: 74254919--74255702 Score: 883
Period size: 178 Copynumber: 4.4 Consensus size: 178
74254909 ATAAGATTCA
* *
74254919 CTATCATT-AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTCG---CTTCAATCCGCTCCA
1 CTATC-TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-GTAACTTTAATCTGCTCCA
* * * * *
74254980 CTACAACTTCAGGGAGATAGGATTATTGGCTTTAATCTACTCTACTACAAATTTAGGGAGATCAG
64 CTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTACTCCACTACAACTTCAGGGAGATAAG
* * *
74255045 ATTTTCCATCTTCAGTCTGCCCCAATCTAACTTTAGGGGGATAAGACTTG
129 ATTTGCCATCTTCAGTCTGCCCCACTCTAACTTCAGGGGGATAAGACTTG
* * *
74255095 CTCTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTAGTTTAATCTGCTCCACT
1 CTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCTGCTCCACT
* * *
74255160 GCAACTTCTA-GGAGATAGGATTATTGGCTTTAATCTGCTACACTACAACTTCAGGGTGATAAGA
66 GCAACTTC-AGGGAGATAGGATTATTGGCTTTAATCTACTCCACTACAACTTCAGGGAGATAAGA
74255224 TTTGCCATCTTCAGTCTGCCCCACTGC-AACTTCAGGGGGATAAGACTTG
130 TTTGCCATCTTCAGTCTGCCCCACT-CTAACTTCAGGGGGATAAGACTTG
* * * **
74255273 -TAACTTTAATCTGCTCCACTGCAACTTCAAAGAGATAAGACTTGTAACTTTAATCCT-CTCCAC
1 CTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAAT-CTGCTCCAC
* * * * * *
74255336 TGCAACTTTAGGGAGATAGGATTATTGGCTTTAACCTACTCCATTGCAACTTTAAGGAGATAAGA
65 TGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTACTCCACTACAACTTCAGGGAGATAAGA
* * *
74255401 TTCGCCATCTTCAGTCTACCCCACTGTAACTTCAGGGGGATAAGACTTG
130 TTTGCCATCTTCAGTCTGCCCCACTCTAACTTCAGGGGGATAAGACTTG
* * * * *
74255450 CTTTCTTCAGTCTGTTACACTGCAACTTTAGGGAGATAAGACTTGTAACTTTAATATGCTCCACT
1 CTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCTGCTCCACT
* * ** *
74255515 GCAACTTCAGGGAGATAGAATTATTGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAGGAT
66 GCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTACTCCACTACAACTTCAGGGAGATAAGA-
* * * * * **
74255580 TATTGGC-T-TT-AATCTGCTCCACTGC-AACTTCAGGGAGATAAGAATCA
130 T-TTGCCATCTTCAGTCTGCCCCACT-CTAACTTCAGGGGGATAAGACTTG
* * * * ** * *
74255627 CCATCTTCAGTCTGCCCCACCGCAACTTCAAAGG-GATAAGACTTGCTTTCTTCAGTCTGCTCCA
1 CTATCTTCAGTCTGCTCCACTGCAACTTC-AGGGAGATAAGACTTG-TAACTTTAATCTGCTCCA
*
74255691 TTGCAACTTCAG
64 CTGCAACTTCAG
74255703 TAAGATAAGA
Statistics
Matches: 514, Mismatches: 78, Indels: 30
0.83 0.13 0.05
Matches are distributed among these distances:
175 3 0.01
176 41 0.08
177 213 0.41
178 250 0.49
179 4 0.01
180 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (178 bp):
CTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCTGCTCCACT
GCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTACTCCACTACAACTTCAGGGAGATAAGAT
TTGCCATCTTCAGTCTGCCCCACTCTAACTTCAGGGGGATAAGACTTG
Found at i:74255315 original size:222 final size:221
Alignment explanation
Indices: 74255105--74255802 Score: 815
Period size: 222 Copynumber: 3.1 Consensus size: 221
74255095 CTCTCTTCAG
* *
74255105 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTAG-TTTAATCTGCTCCACTGCAACTTCT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTATTGGCTTTAATCTGCTCCACTGCAACTTCT
* * * ** * * **
74255169 AGGAGATAGGATTATTGGCTTTAATCTGCTACACTACAACTTCAGGGTGATAAGATTTGCCATCT
65 AGGAGATAGGATTATCGCCTTTAGTCTGCCCCACTGCAACTTCAGGG-GATAAGACTTGCTTTCT
* *
74255234 TCAGTCTGCCCCACTGCAACTTCAGGGGGATAAGACTTGTAACTTTAATCTGCTCCACTGCAACT
129 TCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCTGCTCCACTGCAACT
* * **
74255299 TCAAAGAGATAAGACTT-GTAACTTTAA
194 TCAAGGAGATAAGACTTATTGGCTTTAA
* * * * *
74255326 TCCT-CTCCACTGCAACTTTAGGGAGATAGGATTATTGGCTTTAACCTACTCCATTGCAACTT-T
1 T-CTGCTCCACTGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCACTGCAACTTCT
* * *
74255389 AAGGAGATAAGA-T-TCGCCATCTTCAGTCTACCCCACTGTAACTTCAGGGGGATAAGACTTGCT
65 -AGGAGATAGGATTATCGCC-T-TT-AGTCTGCCCCACTGCAACTTCA-GGGGATAAGACTTGCT
* * * *
74255452 TTCTTCAGTCTGTTACACTGCAACTTTAGGGAGATAAGACTTGTAACTTTAATATGCTCCACTGC
125 TTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCTGCTCCACTGC
* *
74255517 AACTTCAGGGAGAT-AGAATTATTGGCTTTAA
190 AACTTCAAGGAGATAAGACTTATTGGCTTTAA
* *
74255548 TCTGCTCCACTGTAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTC-A
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCACTGCAACTTCTA
* * * *
74255612 GGGAGATAAGA--ATCACCATCTTCAGTCTGCCCCACCGCAACTTCAAAGGGATAAGACTTGCTT
66 -GGAGATAGGATTATCGCC-T-TT-AGTCTGCCCCACTGCAACTTC-AGGGGATAAGACTTGCTT
* ** *
74255675 TCTTCAGTCTGCTCCATTGCAACTTCAGTAAGATAAGACTTGTAACTTTAATCCGCTCCACTGCA
126 TCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCTGCTCCACTGCA
*
74255740 ACTTCAAGGAGATAGGA-TTATTGGCTTTAA
191 ACTTCAAGGAGATAAGACTTATTGGCTTTAA
*
74255770 TCTGCTCCACTGCAACTTTAGGGAGATAAGATT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATT
74255803 CATCATCTTC
Statistics
Matches: 409, Mismatches: 54, Indels: 27
0.83 0.11 0.06
Matches are distributed among these distances:
219 3 0.01
220 8 0.02
221 66 0.16
222 326 0.80
223 6 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (221 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCACTGCAACTTCTA
GGAGATAGGATTATCGCCTTTAGTCTGCCCCACTGCAACTTCAGGGGATAAGACTTGCTTTCTTC
AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCTGCTCCACTGCAACTTC
AAGGAGATAAGACTTATTGGCTTTAA
Found at i:74255654 original size:355 final size:352
Alignment explanation
Indices: 74254900--74255674 Score: 1002
Period size: 355 Copynumber: 2.2 Consensus size: 352
74254890 CCACCGCAGT
* * **
74254900 TTCAGGGAAATAAGATTCACTATCATTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTCG
1 TTCAGGGAGATAAGAATCACTATC-TTAGTCTGCTCCACTGCAACTTCAAAGAGATAAGACTT-G
* *
74254965 CTTCAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATTGGCTTTAATCTACTCTACTACAA
64 CTTCAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATTGGCTTTAACCTACTCCACTACAA
* * ** * *
74255030 ATTTAGGGAGATCAGATTTTCCATCTTCAGTCTGCCCCAATCTAACTTTAGGGGGATAAGACTTG
129 ATTTAAGGAGATAAGATTCGCCATCTTCAGTCTACCCCAATCTAACTTCAGGGGGATAAGACTTG
* * * *
74255095 CTCTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTAGTTTAATCTGCTCCACT
194 CTCTCTTCAGTCTGCTACACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATATGCTCCACT
* *
74255160 GCAACTTCTAGGAGATAGGATTATTGGCTTTAATCTGCTACACTACAACTTCAGGGTGATAAGAT
259 GCAACTTCTAGGAGATAGAATTATTGGCTTTAATCTGCTACACTACAACTTCAGGGAGATAAGAT
*
74255225 TTGCCATCTTCAGTCTGCCCCACTGCAAC
324 TTGCCATCTTCAATCTGCCCCACTGCAAC
* * ** * *
74255254 TTCAGGGGGATAAGACT-TGTAACTTTAATCTGCTCCACTGCAACTTCAAAGAGATAAGACTTGT
1 TTCAGGGAGATAAGAATCACTATC-TTAGTCTGCTCCACTGCAACTTCAAAGAGATAAGACTTG-
* * * * * *
74255318 AACTTTAATCCTCTCCACTGCAACTTTAGGGAGATAGGATTATTGGCTTTAACCTACTCCATTGC
64 --CTTCAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATTGGCTTTAACCTACTCCACTAC
* * *
74255383 AACTTTAAGGAGATAAGATTCGCCATCTTCAGTCTACCCCACTGTAACTTCAGGGGGATAAGACT
127 AAATTTAAGGAGATAAGATTCGCCATCTTCAGTCTACCCCAATCTAACTTCAGGGGGATAAGACT
* * *
74255448 TGCTTTCTTCAGTCTGTTACACTGCAACTTTAGGGAGATAAGACTTGTAACTTTAATATGCTCCA
192 TGCTCTCTTCAGTCTGCTACACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATATGCTCCA
* ** *
74255513 CTGCAACTTC-AGGGAGATAGAATTATTGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAG
257 CTGCAACTTCTA-GGAGATAGAATTATTGGCTTTAATCTGCTACACTACAACTTCAGGGAGATAA
* *
74255577 GATTATTGGC-T-TT-AATCTGCTCCACTGCAAC
321 GA-T-TTGCCATCTTCAATCTGCCCCACTGCAAC
* * * *
74255608 TTCAGGGAGATAAGAATCACCATCTTCAGTCTGCCCCACCGCAACTTCAAAGGGATAAGACTTGC
1 TTCAGGGAGATAAGAATCACTATCTT-AGTCTGCTCCACTGCAACTTCAAAGAGATAAGACTTGC
74255673 TT
65 TT
74255675 TCTTCAGTCT
Statistics
Matches: 360, Mismatches: 53, Indels: 18
0.84 0.12 0.04
Matches are distributed among these distances:
352 4 0.01
353 38 0.11
354 48 0.13
355 264 0.73
356 2 0.01
357 4 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (352 bp):
TTCAGGGAGATAAGAATCACTATCTTAGTCTGCTCCACTGCAACTTCAAAGAGATAAGACTTGCT
TCAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATTGGCTTTAACCTACTCCACTACAAAT
TTAAGGAGATAAGATTCGCCATCTTCAGTCTACCCCAATCTAACTTCAGGGGGATAAGACTTGCT
CTCTTCAGTCTGCTACACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATATGCTCCACTGC
AACTTCTAGGAGATAGAATTATTGGCTTTAATCTGCTACACTACAACTTCAGGGAGATAAGATTT
GCCATCTTCAATCTGCCCCACTGCAAC
Found at i:74256096 original size:24 final size:24
Alignment explanation
Indices: 74256060--74256106 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
74256050 GCCCCTACTA
*
74256060 TAATGTTCAAGGTTCAATCCACTG
1 TAATCTTCAAGGTTCAATCCACTG
*
74256084 TAATCTTCCAGGTTCAATCCACT
1 TAATCTTCAAGGTTCAATCCACT
74256107 ATACTTTTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.34
Consensus pattern (24 bp):
TAATCTTCAAGGTTCAATCCACTG
Found at i:74262620 original size:24 final size:25
Alignment explanation
Indices: 74262593--74262643 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
74262583 ATCATATATG
* *
74262593 TATATACGTATAATATA-AATTGTA
1 TATATACATATAAAATATAATTGTA
*
74262617 TATATACATATAAAATATTATTGTA
1 TATATACATATAAAATATAATTGTA
74262642 TA
1 TA
74262644 GGAAAATTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 15 0.65
25 8 0.35
ACGTcount: A:0.47, C:0.04, G:0.06, T:0.43
Consensus pattern (25 bp):
TATATACATATAAAATATAATTGTA
Found at i:74262821 original size:20 final size:21
Alignment explanation
Indices: 74262770--74262821 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 21
74262760 TAAAGATATA
*
74262770 TAAAATAATACATAATAAATT
1 TAAAATAATACATAATAAACT
*
74262791 TGAATAATAATACATGA-AAACT
1 T-AA-AATAATACATAATAAACT
74262813 TAAAATAAT
1 TAAAATAAT
74262822 TATATATGAC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 6 0.22
21 3 0.11
22 7 0.26
23 11 0.41
ACGTcount: A:0.60, C:0.06, G:0.04, T:0.31
Consensus pattern (21 bp):
TAAAATAATACATAATAAACT
Found at i:74262844 original size:24 final size:23
Alignment explanation
Indices: 74262770--74262864 Score: 81
Period size: 24 Copynumber: 4.2 Consensus size: 23
74262760 TAAAGATATA
74262770 TAAAATAATACATA-AT--AAATT
1 TAAAATAATA-ATATATGAAAATT
* * *
74262791 T-GAATAATAATACATGAAAACT
1 TAAAATAATAATATATGAAAATT
*
74262813 TAAAATAATTATATATGACAAATT
1 TAAAATAATAATATATGA-AAATT
**
74262837 TAAAATAATAATATGCGATAAATT
1 TAAAATAATAATATATGA-AAATT
74262861 TAAA
1 TAAA
74262865 CAATATTAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
19 3 0.05
20 9 0.15
21 1 0.02
22 5 0.08
23 13 0.22
24 28 0.47
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.33
Consensus pattern (23 bp):
TAAAATAATAATATATGAAAATT
Found at i:74272769 original size:5 final size:5
Alignment explanation
Indices: 74272759--74272799 Score: 75
Period size: 5 Copynumber: 8.4 Consensus size: 5
74272749 GCTTACATTA
74272759 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTA- TTTAT TT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TT
74272800 GCTTATTATT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 4 0.11
5 31 0.89
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:74272956 original size:15 final size:15
Alignment explanation
Indices: 74272936--74272969 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
74272926 TTATCGTTGA
74272936 TTATTATTATTGTT-T
1 TTATTA-TATTGTTAT
74272951 TTATTATATTGTTAT
1 TTATTATATTGTTAT
74272966 TTAT
1 TTAT
74272970 ATCATTAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.71
Consensus pattern (15 bp):
TTATTATATTGTTAT
Found at i:74273319 original size:107 final size:108
Alignment explanation
Indices: 74273190--74273454 Score: 453
Period size: 107 Copynumber: 2.5 Consensus size: 108
74273180 TATCCAAATA
* *
74273190 AAAATTTCAAAATAAGGTAATATTTTGCGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTAG
1 AAAATTTCAAAATAAGGCAATATTTTACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCT-G
*
74273255 G-TTTCGATTTTTCGTTCGACCAAATAGCT-AAAATATCCTTTT
65 GTTTTCGATTTTTCGTTCGACCAAATAGCTAAAAATATCATTTT
74273297 AAAATTTCAAAATAAGGCAATATTTTACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
1 AAAATTTCAAAATAAGGCAATATTTTACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
*
74273362 TTTTCGATTTTTCGTTCGACTAAATAGCTAAAAATATCATTTT
66 TTTTCGATTTTTCGTTCGACCAAATAGCTAAAAATATCATTTT
* *
74273405 AAAATTTCAAAATAAGGCAATATTTCACGTTTAGAAGTTCGAGAAAACGT
1 AAAATTTCAAAATAAGGCAATATTTTACGTTTGGAAGTTCGAGAAAACGT
74273455 ACCAGCTACA
Statistics
Matches: 150, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
106 2 0.01
107 88 0.59
108 60 0.40
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.34
Consensus pattern (108 bp):
AAAATTTCAAAATAAGGCAATATTTTACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
TTTTCGATTTTTCGTTCGACCAAATAGCTAAAAATATCATTTT
Found at i:74274984 original size:13 final size:13
Alignment explanation
Indices: 74274966--74275003 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
74274956 AGGATATCTG
*
74274966 TCAATATTAGGCC
1 TCAATATCAGGCC
74274979 TCAATATCAGGCC
1 TCAATATCAGGCC
74274992 TCAATATCAGGC
1 TCAATATCAGGC
74275004 TGGTGCCTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (13 bp):
TCAATATCAGGCC
Found at i:74282933 original size:128 final size:129
Alignment explanation
Indices: 74282744--74282975 Score: 403
Period size: 128 Copynumber: 1.8 Consensus size: 129
74282734 GTCGAAGATT
* *
74282744 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAACAGATCGCATCAAATCTTATCTCCCTAAGCAGT
1 ACAGATCTTATCTCTCTGAAGTTACAGTAGAACAGATCGCATCAAATCTTATCTCCCTAAGCAAT
*
74282809 AGTGGAGCAGACGAAAGAAACCAATCC-TATCTCCCTGAAGTTGCAGTGGTGCGGATTAAAACC
66 AGTGGAGCAGACGAAAGAAACCAAGCCTTATCTCCCTGAAGTTGCAGTGGTGCGGATTAAAACC
* *
74282872 ACAGATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAAT
1 ACAGATCTTATCTCTCTGAAGTTACAGTAGAACAGATCGCATCAAATCTTATCTCCCTAAGCAAT
*
74282937 AGTGGAGCAGACGAAAGAAACCAAGCCTTGTCTCCCTGA
66 AGTGGAGCAGACGAAAGAAACCAAGCCTTATCTCCCTGA
74282976 GCAGCTGTGG
Statistics
Matches: 97, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
128 87 0.90
129 10 0.10
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (129 bp):
ACAGATCTTATCTCTCTGAAGTTACAGTAGAACAGATCGCATCAAATCTTATCTCCCTAAGCAAT
AGTGGAGCAGACGAAAGAAACCAAGCCTTATCTCCCTGAAGTTGCAGTGGTGCGGATTAAAACC
Found at i:74283033 original size:128 final size:129
Alignment explanation
Indices: 74282714--74283405 Score: 473
Period size: 132 Copynumber: 5.3 Consensus size: 129
74282704 GTCCTATTTT
* * * * * * ** * * *
74282714 CCTGAGCAACAGCGGAATAGGTCGAAGATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAACAG
1 CCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCT-AAGCAGTAGTGGAGCAG
* *
74282779 ATCG-C-ATCAAATCTTAT-CTCCCTAA-GCAGTAGTGG-AGCAGACGAAAGAAACCAATCC-TA
65 ATCGACGA-CAAATCTTATCCTCCC-AAGGCAGTAG-GGAAGCAGACGAAAGAAACC-AGCCTTG
74282838 TCTC
126 TCTC
** * * * ** * * * * *
74282842 CCTGAAGTTGCAGTGGTG-CGGATT-AAAACCACAGATCTTATCTCTCTGAAGTTA-CAGTAGAG
1 CCTG-AGCAGCAGTGGAGTAGG-TTGAAGATTATAGATCTTATCTCCCT-AAG-CAGTAGTGGAG
* *
74282904 CAGATCG-C-ATCAAGTCTTAT-CTCCCTAA-GCAATAGTGG-AGCAGACGAAAGAAACCAAGCC
62 CAGATCGACGA-CAAATCTTATCCTCCC-AAGGCAGTAG-GGAAGCAGACGAAAGAAACC-AGCC
74282964 TTGTCTC
123 TTGTCTC
*
74282971 CCTGAGCAGCTGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 CCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
* * *** **
74283036 TCGAAGACGACAAATCTTATCCTTCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAGCCTTGTC
66 TC---GACGACAAATCTTATCCTCCCAAGGCAGTAGGGAAGCAGACGAAAGAAACCAGCCTTGTC
74283101 TC
128 TC
* * *
74283103 TCTGAGCAGCAGTGGGGTAGG-TGAAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAG
1 CCTGAGCAGCAGTGGAGTAGGTTG-AAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAG
* * *** **
74283167 ATCGAAGACGACAAATCTTATCCTTCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAGCCTTGT
65 ATC---GACGACAAATCTTATCCTCCCAAGGCAGTAGGGAAGCAGACGAAAGAAACCAGCCTTGT
74283232 CTC
127 CTC
* * * *
74283235 TCTGAGCAGCAGTGGAGTAGG-TGAAAGATTGTAGATCTTATCTTCCTAAGCAATAGTGGAGCAG
1 CCTGAGCAGCAGTGGAGTAGGTTG-AAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAG
* * * * *** * ** *
74283299 ATCGAAGACGACGAATCTTATCTTCCCAATGTAGTAGGGAAGCAGATTTAAGACACTGGTCC-TA
65 ATC---GACGACAAATCTTATCCTCCCAAGGCAGTAGGGAAGCAGACGAAAGAAACCAG-CCTTG
74283363 TCTC
126 TCTC
* * *
74283367 CCTGAGCAGTAGTGGAGTAGGTTGAAGAATGTAGATCTT
1 CCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTT
74283406 GTCTTCCTGT
Statistics
Matches: 489, Mismatches: 57, Indels: 32
0.85 0.10 0.06
Matches are distributed among these distances:
127 1 0.00
128 120 0.25
129 38 0.08
131 3 0.01
132 301 0.62
133 26 0.05
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (129 bp):
CCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
TCGACGACAAATCTTATCCTCCCAAGGCAGTAGGGAAGCAGACGAAAGAAACCAGCCTTGTCTC
Found at i:74283042 original size:44 final size:44
Alignment explanation
Indices: 74282789--74283383 Score: 155
Period size: 44 Copynumber: 13.6 Consensus size: 44
74282779 ATCGCATCAA
*
74282789 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGA-AACCA-
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG-AAGACTA-CAG
* ** * * * * * *
74282832 ATCCTATCTCCCTGAAGTTGCAGTGGTGCGGAT-TAAAACCACAG
1 ATCTTATCTCCCT-AAGCAGTAGTGGAGCAGATCGAAGACTACAG
* * * * * *
74282876 ATCTTATCTCTCTGAAGTTA-CAGTAGAGCAGATCGCA-TC-A-AG
1 ATCTTATCTCCCT-AAG-CAGTAGTGGAGCAGATCGAAGACTACAG
* *
74282918 -TCTTATCTCCCTAAGCAATAGTGGAGCAGA-CGAAAGA-AACCA-
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG-AAGACTA-CAG
* * * * * * * *
74282960 AGCCTTGTCTCCCTGAGCAGCT-GTGGAGTAGGTTGAAGATTATAG
1 A-TCTTATCTCCCTAAGCAG-TAGTGGAGCAGATCGAAGACTACAG
* *
74283005 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTACAG
* * ** *
74283049 ATCTTATCCTTCC-AAGGTAGTAG-GGAAGCAGATTTAAG-CCACCAG
1 ATCTTAT-CTCCCTAA-GCAGTAGTGG-AGCAGATCGAAGACTA-CAG
* * * * * * * * * **
74283094 -CCTTGTCTCTCTGAGCAGCAGTGGGGTAGGT-GAAAGATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG-AAGACTACAG
* *
74283137 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTACAG
* * ** *
74283181 ATCTTATCCTTCC-AAGGTAGTAG-GGAAGCAGATTTAAG-CCACCAG
1 ATCTTAT-CTCCCTAA-GCAGTAGTGG-AGCAGATCGAAGACTA-CAG
* * * * * * * * **
74283226 -CCTTGTCTCTCTGAGCAGCAGTGGAGTAGGT-GAAAGATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG-AAGACTACAG
* * *
74283269 ATCTTATCTTCCTAAGCAATAGTGGAGCAGATCGAAGACGAC-G
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTACAG
* ** *
74283312 AATCTTATCTTCCC-AATGTAGTAG-GGAAGCAGATTTAAGAC-ACTG
1 -ATCTTATC-TCCCTAA-GCAGTAGTGG-AGCAGATCGAAGACTACAG
* * *
74283357 GTCCTATCTCCCTGAGCAGTAGTGGAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAG
74283384 TAGGTTGAAG
Statistics
Matches: 387, Mismatches: 119, Indels: 92
0.65 0.20 0.15
Matches are distributed among these distances:
39 3 0.01
40 14 0.04
41 12 0.03
42 2 0.01
43 68 0.18
44 215 0.56
45 73 0.19
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTACAG
Found at i:74283413 original size:132 final size:132
Alignment explanation
Indices: 74282960--74283405 Score: 693
Period size: 132 Copynumber: 3.4 Consensus size: 132
74282950 AAAGAAACCA
* *
74282960 AGCCTTGTCTCCCTGAGCAGCTGTGGAGTAGGTTG-AAGATTATAGATCTTATCTCCCTAAGCAG
1 AGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGG-TGAAAGATTGTAGATCTTATCTCCCTAAGCAG
74283024 TAGTGGAGCAGATCGAAGACGACAAATCTTATCCTTCCAAGGTAGTAGGGAAGCAGATTTAAGCC
65 TAGTGGAGCAGATCGAAGACGACAAATCTTATCCTTCCAAGGTAGTAGGGAAGCAGATTTAAGCC
74283089 ACC
130 ACC
* *
74283092 AGCCTTGTCTCTCTGAGCAGCAGTGGGGTAGGTGAAAGATTGTAGATCTTATCTCCCTAAGCAGT
1 AGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTGAAAGATTGTAGATCTTATCTCCCTAAGCAGT
74283157 AGTGGAGCAGATCGAAGACGACAAATCTTATCCTTCCAAGGTAGTAGGGAAGCAGATTTAAGCCA
66 AGTGGAGCAGATCGAAGACGACAAATCTTATCCTTCCAAGGTAGTAGGGAAGCAGATTTAAGCCA
74283222 CC
131 CC
* * *
74283224 AGCCTTGTCTCTCTGAGCAGCAGTGGAGTAGGTGAAAGATTGTAGATCTTATCTTCCTAAGCAAT
1 AGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTGAAAGATTGTAGATCTTATCTCCCTAAGCAGT
* * *
74283289 AGTGGAGCAGATCGAAGACGACGAATCTTAT-CTTCCCAATGTAGTAGGGAAGCAGATTTAAGAC
66 AGTGGAGCAGATCGAAGACGACAAATCTTATCCTT-CCAAGGTAGTAGGGAAGCAGATTTAAGCC
*
74283353 ACT
130 ACC
* * * *
74283356 GGTCC-TATCTCCCTGAGCAGTAGTGGAGTAGGTTG-AAGAATGTAGATCTT
1 AG-CCTTGTCTCCCTGAGCAGCAGTGGAGTAGG-TGAAAGATTGTAGATCTT
74283406 GTCTTCCTGT
Statistics
Matches: 294, Mismatches: 16, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
131 5 0.02
132 285 0.97
133 4 0.01
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (132 bp):
AGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTGAAAGATTGTAGATCTTATCTCCCTAAGCAGT
AGTGGAGCAGATCGAAGACGACAAATCTTATCCTTCCAAGGTAGTAGGGAAGCAGATTTAAGCCA
CC
Found at i:74285778 original size:15 final size:15
Alignment explanation
Indices: 74285758--74285791 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
74285748 TTATCGTTGA
74285758 TTATTATTATTGTT-T
1 TTATTA-TATTGTTAT
74285773 TTATTATATTGTTAT
1 TTATTATATTGTTAT
74285788 TTAT
1 TTAT
74285792 ATCATTAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.71
Consensus pattern (15 bp):
TTATTATATTGTTAT
Found at i:74286139 original size:107 final size:107
Alignment explanation
Indices: 74286012--74286453 Score: 647
Period size: 107 Copynumber: 4.1 Consensus size: 107
74286002 TATCCAAATA
* * * *
74286012 AAAATTTCAAAATAAGGCAATATTTTGCGTTTGGAAGTTCGAGAAAACGTGCCTTATCGTGCTGG
1 AAAATTTCAAAATAAAGCAATATTTTACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
*
74286077 GTTTTGATTTTTCGTTCGACCAAATAGCTAAAATATCCTTTT
66 GTTTCGATTTTTCGTTCGACCAAATAGCTAAAATATCCTTTT
* *
74286119 AAAATTTCAAAATAAAGCAATATTTTACGTTTGGAAGTTCGAGAAAACGTACCCTAACATGCTGG
1 AAAATTTCAAAATAAAGCAATATTTTACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
* *
74286184 GTTTCAATTTTTTGTTCGACCAAATAGCTAAAAATATCCTTTT
66 GTTTCGATTTTTCGTTCGACCAAATAGCT-AAAATATCCTTTT
*
74286227 AAAATTTCAAAATAAAGCAATATTTCACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
1 AAAATTTCAAAATAAAGCAATATTTTACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
*
74286292 GTTTCGATTTTTTTTTTCGTTCGACCAAATAGCTAAAATATCCTTCT
66 GTTTCGA-----TTTTTCGTTCGACCAAATAGCTAAAATATCCTTTT
* * *
74286339 AAAATTTCAGAATAAGGCAATATTTTACGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGG
1 AAAATTTCAAAATAAAGCAATATTTTACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
* * *
74286404 GTTTCGATTTCTCGTT-GAACCAAATAGC-CAAATATCCTCTT
66 GTTTCGATTTTTCGTTCG-ACCAAATAGCTAAAATATCCTTTT
74286445 -AAATTTCAA
1 AAAATTTCAA
74286454 TCCATGTCAT
Statistics
Matches: 304, Mismatches: 24, Indels: 16
0.88 0.07 0.05
Matches are distributed among these distances:
105 8 0.03
106 11 0.04
107 103 0.34
108 81 0.27
112 80 0.26
113 21 0.07
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (107 bp):
AAAATTTCAAAATAAAGCAATATTTTACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
GTTTCGATTTTTCGTTCGACCAAATAGCTAAAATATCCTTTT
Found at i:74286396 original size:220 final size:213
Alignment explanation
Indices: 74286012--74286453 Score: 645
Period size: 220 Copynumber: 2.0 Consensus size: 213
74286002 TATCCAAATA
* ** * *
74286012 AAAATTTCAAAATAAGGCAATATTTTGCGTTTGGAAGTTCGAGAAAACGTGCCTTATCGTGCTGG
1 AAAATTTCAAAATAAAGCAATATTTCACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
* *
74286077 GTTTTGATTTTTCGTTCGACCAAATAGCTAAAATATCCTTTTAAAATTTCAAAATAAAGCAATAT
66 GTTTCGATTTTTCGTTCGACCAAATAGCTAAAATATCCTTCTAAAATTTCAAAATAAAGCAATAT
* * *
74286142 TTTACGTTTGGAAGTTCGAGAAAACGTACCCTAACATGCTGGGTTTCAATTTTTTGTTCG-ACCA
131 TTTACGTTTGGAAATTCGAGAAAACGTACCCTAACATGCTGGGTTTCAATTTCTCGTT-GAACCA
*
74286206 AATAGCTAAAAATATCCTTTT
195 AATAGC--AAAATATCCTCTT
74286227 AAAATTTCAAAATAAAGCAATATTTCACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
1 AAAATTTCAAAATAAAGCAATATTTCACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
* *
74286292 GTTTCGATTTTTTTTTTCGTTCGACCAAATAGCTAAAATATCCTTCTAAAATTTCAGAATAAGGC
66 GTTTCGA-----TTTTTCGTTCGACCAAATAGCTAAAATATCCTTCTAAAATTTCAAAATAAAGC
* * *
74286357 AATATTTTACGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTCGTTGA
126 AATATTTTACGTTTGGAAATTCGAGAAAACGTACCCTAACATGCTGGGTTTCAATTTCTCGTTGA
*
74286422 ACCAAATAGCCAAATATCCTCTT
191 ACCAAATAGCAAAATATCCTCTT
74286445 -AAATTTCAA
1 AAAATTTCAA
74286454 TCCATGTCAT
Statistics
Matches: 204, Mismatches: 17, Indels: 10
0.88 0.07 0.04
Matches are distributed among these distances:
215 66 0.32
217 9 0.04
218 11 0.05
219 1 0.00
220 117 0.57
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (213 bp):
AAAATTTCAAAATAAAGCAATATTTCACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
GTTTCGATTTTTCGTTCGACCAAATAGCTAAAATATCCTTCTAAAATTTCAAAATAAAGCAATAT
TTTACGTTTGGAAATTCGAGAAAACGTACCCTAACATGCTGGGTTTCAATTTCTCGTTGAACCAA
ATAGCAAAATATCCTCTT
Found at i:74287498 original size:21 final size:21
Alignment explanation
Indices: 74287435--74287579 Score: 94
Period size: 21 Copynumber: 7.0 Consensus size: 21
74287425 GAAGCTCATG
*
74287435 AGAGCTAAACGGAAACCCA-A
1 AGAGCTGAACGGAAACCCATA
* * * * *
74287455 AGGGTTGAACGGAAGCTCGTA
1 AGAGCTGAACGGAAACCCATA
74287476 AGAGCTGAACGGAAACCCATA
1 AGAGCTGAACGGAAACCCATA
* * * * * *
74287497 AGGGTTGAACTGAAGCTCAAA
1 AGAGCTGAACGGAAACCCATA
* **
74287518 AGAGCTAAACAAAAACCCATA
1 AGAGCTGAACGGAAACCCATA
* * * * * *
74287539 AGAGTTAAACTGAAGCTCAAA
1 AGAGCTGAACGGAAACCCATA
74287560 AGAGCTGAACGGAAACCCAT
1 AGAGCTGAACGGAAACCCAT
74287580 TAGGGTTGAA
Statistics
Matches: 87, Mismatches: 37, Indels: 1
0.70 0.30 0.01
Matches are distributed among these distances:
20 13 0.15
21 74 0.85
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.13
Consensus pattern (21 bp):
AGAGCTGAACGGAAACCCATA
Found at i:74287513 original size:42 final size:42
Alignment explanation
Indices: 74287416--74287599 Score: 219
Period size: 42 Copynumber: 4.4 Consensus size: 42
74287406 GAAGCCCGAA
**
74287416 GGTTGAA-TAGAAGCTCATGAGAGCTAAACGGAAACCCA-AAG
1 GGTTGAACT-GAAGCTCAAAAGAGCTAAACGGAAACCCATAAG
* ** *
74287457 GGTTGAACGGAAGCTCGTAAGAGCTGAACGGAAACCCATAAG
1 GGTTGAACTGAAGCTCAAAAGAGCTAAACGGAAACCCATAAG
**
74287499 GGTTGAACTGAAGCTCAAAAGAGCTAAACAAAAACCCATAAG
1 GGTTGAACTGAAGCTCAAAAGAGCTAAACGGAAACCCATAAG
* * * *
74287541 AGTTAAACTGAAGCTCAAAAGAGCTGAACGGAAACCCATTAG
1 GGTTGAACTGAAGCTCAAAAGAGCTAAACGGAAACCCATAAG
* *
74287583 GGTTGAACAGAAACTCA
1 GGTTGAACTGAAGCTCA
74287600 TATGAGTTAA
Statistics
Matches: 121, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
41 33 0.27
42 88 0.73
ACGTcount: A:0.42, C:0.18, G:0.24, T:0.15
Consensus pattern (42 bp):
GGTTGAACTGAAGCTCAAAAGAGCTAAACGGAAACCCATAAG
Found at i:74287713 original size:24 final size:24
Alignment explanation
Indices: 74287686--74287733 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
74287676 TACTTGGGTA
*
74287686 ATTTGCCGTCAAATCATCCTTTGC
1 ATTTACCGTCAAATCATCCTTTGC
*
74287710 ATTTACCGTCAATTCATCCTTTGC
1 ATTTACCGTCAAATCATCCTTTGC
74287734 CACAGAACGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.21, C:0.29, G:0.10, T:0.40
Consensus pattern (24 bp):
ATTTACCGTCAAATCATCCTTTGC
Found at i:74294387 original size:21 final size:21
Alignment explanation
Indices: 74294342--74294387 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
74294332 TCATCATATC
****
74294342 AAAACTATGGGAAATTATTGT
1 AAAACTATGGGAAATTAAAAA
74294363 AAAACTATGGGAAATTAAAAA
1 AAAACTATGGGAAATTAAAAA
74294384 AAAA
1 AAAA
74294388 ATGTAAGACA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.57, C:0.04, G:0.15, T:0.24
Consensus pattern (21 bp):
AAAACTATGGGAAATTAAAAA
Found at i:74303421 original size:15 final size:16
Alignment explanation
Indices: 74303401--74303430 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
74303391 ATGTCAGAGC
74303401 AAATAAAAG-AGAAAA
1 AAATAAAAGAAGAAAA
74303416 AAATAAAAGAAGAAA
1 AAATAAAAGAAGAAA
74303431 TAAGAAGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (16 bp):
AAATAAAAGAAGAAAA
Found at i:74304747 original size:3 final size:3
Alignment explanation
Indices: 74304739--74304808 Score: 65
Period size: 3 Copynumber: 24.3 Consensus size: 3
74304729 AGAATTTTTC
* * * *
74304739 TCT TCT TC- TCC TCC TCT TCT TCT TAT T-T TCT TCT TCT TCT TCT TTT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
* *
74304785 TCT TTT TCT TC- TCT GCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
74304809 TTTATTTTAC
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
2 6 0.11
3 50 0.89
ACGTcount: A:0.01, C:0.31, G:0.01, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:74304784 original size:17 final size:17
Alignment explanation
Indices: 74304739--74304808 Score: 72
Period size: 17 Copynumber: 4.2 Consensus size: 17
74304729 AGAATTTTTC
* *
74304739 TCTTCTTCTCCTCCTCT
1 TCTTCTTCTCTTCTTCT
* *
74304756 TCTTCTTATTTTCTTCT
1 TCTTCTTCTCTTCTTCT
74304773 TCTTCTTCT-TT-TTCT
1 TCTTCTTCTCTTCTTCT
* *
74304788 TTTTCTTCTCTGCTTCT
1 TCTTCTTCTCTTCTTCT
74304805 TCTT
1 TCTT
74304809 TTTATTTTAC
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
15 12 0.28
16 3 0.07
17 28 0.65
ACGTcount: A:0.01, C:0.31, G:0.01, T:0.66
Consensus pattern (17 bp):
TCTTCTTCTCTTCTTCT
Found at i:74304816 original size:26 final size:24
Alignment explanation
Indices: 74304753--74304816 Score: 85
Period size: 26 Copynumber: 2.6 Consensus size: 24
74304743 CTTCTCCTCC
*
74304753 TCTTCTTCTTA-TTTTCTTCTTCT
1 TCTTCTTTTTATTTTTCTTCTTCT
*
74304776 TCTTCTTTTTCTTTTTCTTCTCTGCT
1 TCTTCTTTTTATTTTTCTTCT-T-CT
74304802 TCTTCTTTTTATTTT
1 TCTTCTTTTTATTTT
74304817 ACTGCCTAGC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
23 9 0.26
24 9 0.26
25 1 0.03
26 16 0.46
ACGTcount: A:0.03, C:0.23, G:0.02, T:0.72
Consensus pattern (24 bp):
TCTTCTTTTTATTTTTCTTCTTCT
Found at i:74305942 original size:324 final size:327
Alignment explanation
Indices: 74304907--74306208 Score: 2417
Period size: 324 Copynumber: 4.0 Consensus size: 327
74304897 TAGAAAATGG
* * *
74304907 TTAAAATGACTGATTTATTATTTTTTGAAAGTTGAGTGACGGAATTGAAATCAAAATGACTGTTT
1 TTAAAAGGACTGATTTATTATTTTTTGAAAGTTGAGTGACAGAATTGAAATCAGAATGACTGTTT
*
74304972 TATCAGTTGCATCAAAGTTGAGTGACTGTCGGTGTAATTTACCCATTATTTTATTTATTTATATG
66 TATCAGTTGCATCAAAGTTGAGTGACTGTCGGTGTAATTTACCCATTATTTTAGTTATTTATATG
74305037 AAAAATCATATTAAATACTAGATGTTTAAAAATAATATTTTTTTTTGAACTAATTAATAACAACA
131 AAAAATCATATTAAATACTAGATGTTTAAAAATAATA-TTTTTTTTGAACTAATTAATAACAACA
74305102 CATGAAATATATAATATTAAAATGAAAAATATTAGAAGCTTTATATATATATATATATAGATGTG
195 CATGAAATATATAATATTAAAATGAAAAATATTAGAAGC-TT-TATATATATATATATAGATGTG
74305167 TGCGTGAAAATTACTTATTTAGAATACAGAGTTGTGTTTAAAATTAACATACAATAAATAATAGT
258 TGCGTGAAAATTACTTATTTAGAATACAGAGTTGTGTTTAAAATTAACATACAATAAATAATAGT
74305232 AAGCT
323 AAGCT
74305237 TTAAAAGGACTGATTTATTATTTTTTGAAAGTTGAGTGACAGAATTGAAATCAGAATGACTGTTT
1 TTAAAAGGACTGATTTATTATTTTTTGAAAGTTGAGTGACAGAATTGAAATCAGAATGACTGTTT
*
74305302 TATCAGTTGCATCAAAGTTGAGTGACTGTCGGTGTAATTTACCCATTATTTTATTTATTTATATG
66 TATCAGTTGCATCAAAGTTGAGTGACTGTCGGTGTAATTTACCCATTATTTTAGTTATTTATATG
74305367 AAAAATCATATTAAATACTAGATGTTTAAAAATAATATTTTTTTTTGAACTAATTAATAACAACA
131 AAAAATCATATTAAATACTAGATGTTTAAAAATAATA-TTTTTTTTGAACTAATTAATAACAACA
74305432 CATGAAATATATAATATTAAAATGAAAAATATTAGAAGCTTTATATATATATATATAGATGTGTG
195 CATGAAATATATAATATTAAAATGAAAAATATTAGAAGCTTTATATATATATATATAGATGTGTG
74305497 CGTGAAAATTACTTATTTAGAATACAGAGTTGTGTTTAAAATTAACATACAATAAATAATAGTAA
260 CGTGAAAATTACTTATTTAGAATACAGAGTTGTGTTTAAAATTAACATACAATAAATAATAGTAA
74305562 GCT
325 GCT
*
74305565 TTAAAAGGACTGATTTATTATTTTTTGAAAGTTGAGTGACGGAATTGAAATCAGAATGACTGTTT
1 TTAAAAGGACTGATTTATTATTTTTTGAAAGTTGAGTGACAGAATTGAAATCAGAATGACTGTTT
*
74305630 TATCAGTTGCATCAAAGTTGAGTGACTGTCGGTGTAATTTACCCACTATTTTAGTTATTTATATG
66 TATCAGTTGCATCAAAGTTGAGTGACTGTCGGTGTAATTTACCCATTATTTTAGTTATTTATATG
74305695 AAAAATCATATTAAATACTAGATGTTTAAAAATAATA-TTTTTTTGAACTAATTAATAACAACAC
131 AAAAATCATATTAAATACTAGATGTTTAAAAATAATATTTTTTTTGAACTAATTAATAACAACAC
74305759 ATGAAATATATAATATTAAAATGAAAAATATTAGAAGC-TT-TATATATATATATAGATGTGTGC
196 ATGAAATATATAATATTAAAATGAAAAATATTAGAAGCTTTATATATATATATATAGATGTGTGC
74305822 GTGAAAATTACTTATTTAGAATACAGAGTTGTGTTTAAAATTAACATACAATAAATAATAGTAAG
261 GTGAAAATTACTTATTTAGAATACAGAGTTGTGTTTAAAATTAACATACAATAAATAATAGTAAG
74305887 CT
326 CT
74305889 TTAAAAGGACTGATTTATTATTTTTTGAAAGTTGAGTGACAGAATTGAAATCAGAATGACTGTTT
1 TTAAAAGGACTGATTTATTATTTTTTGAAAGTTGAGTGACAGAATTGAAATCAGAATGACTGTTT
74305954 TATCAGTTGCATCAAAGTTGAGTGACTGTCGGTGTAATTTACCCATTATTTTAGTTATTTATATG
66 TATCAGTTGCATCAAAGTTGAGTGACTGTCGGTGTAATTTACCCATTATTTTAGTTATTTATATG
74306019 AAAAATCATATTAAATACTAGATGTTT--AAA-AATATTTTTTTTGAACTAATTAATAACAACAC
131 AAAAATCATATTAAATACTAGATGTTTAAAAATAATATTTTTTTTGAACTAATTAATAACAACAC
74306081 ATGAAATATATATAATATTAAAATGAAAAATATTAGAAGC--T-T-TATATATATATAGATGTGT
196 ATG-AA-ATATATAATATTAAAATGAAAAATATTAGAAGCTTTATATATATATATATAGATGTGT
74306142 GCGTGAAAATTACTTATTTAGAATACAGAGTTGTGTTTAAAATTAACATACAATAAATAATAGTA
259 GCGTGAAAATTACTTATTTAGAATACAGAGTTGTGTTTAAAATTAACATACAATAAATAATAGTA
74306207 AG
324 AG
74306209 TATAGTTTGG
Statistics
Matches: 961, Mismatches: 8, Indels: 14
0.98 0.01 0.01
Matches are distributed among these distances:
321 4 0.00
322 119 0.12
323 4 0.00
324 278 0.29
325 2 0.00
326 65 0.07
328 256 0.27
329 2 0.00
330 231 0.24
ACGTcount: A:0.41, C:0.08, G:0.14, T:0.38
Consensus pattern (327 bp):
TTAAAAGGACTGATTTATTATTTTTTGAAAGTTGAGTGACAGAATTGAAATCAGAATGACTGTTT
TATCAGTTGCATCAAAGTTGAGTGACTGTCGGTGTAATTTACCCATTATTTTAGTTATTTATATG
AAAAATCATATTAAATACTAGATGTTTAAAAATAATATTTTTTTTGAACTAATTAATAACAACAC
ATGAAATATATAATATTAAAATGAAAAATATTAGAAGCTTTATATATATATATATAGATGTGTGC
GTGAAAATTACTTATTTAGAATACAGAGTTGTGTTTAAAATTAACATACAATAAATAATAGTAAG
CT
Found at i:74310571 original size:42 final size:42
Alignment explanation
Indices: 74310511--74310596 Score: 136
Period size: 42 Copynumber: 2.0 Consensus size: 42
74310501 TATGTGATTG
**
74310511 ATATTGAAATGGCCAAGATGAGAAATGAATATGAGATAAGAA
1 ATATTGAAATGGAAAAGATGAGAAATGAATATGAGATAAGAA
* *
74310553 ATATTGAATTGGAAAAGATGAGAAATGAATATGAGATGAGAA
1 ATATTGAAATGGAAAAGATGAGAAATGAATATGAGATAAGAA
74310595 AT
1 AT
74310597 GTGATATGTA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.50, C:0.02, G:0.24, T:0.23
Consensus pattern (42 bp):
ATATTGAAATGGAAAAGATGAGAAATGAATATGAGATAAGAA
Found at i:74310591 original size:18 final size:18
Alignment explanation
Indices: 74310526--74310597 Score: 65
Period size: 18 Copynumber: 3.7 Consensus size: 18
74310516 GAAATGGCCA
74310526 AGATGAGAAATGAATATG
1 AGATGAGAAATGAATATG
*
74310544 AGATAAGAAATATTGAAT-TGG
1 AGATGAG-AA-A-TGAATAT-G
74310565 AAAAGATGAGAAATGAATATG
1 ---AGATGAGAAATGAATATG
74310586 AGATGAGAAATG
1 AGATGAGAAATG
74310598 TGATATGTAA
Statistics
Matches: 44, Mismatches: 2, Indels: 16
0.71 0.03 0.26
Matches are distributed among these distances:
18 18 0.41
19 2 0.05
20 2 0.05
21 12 0.27
22 2 0.05
23 2 0.05
24 6 0.14
ACGTcount: A:0.51, C:0.00, G:0.26, T:0.22
Consensus pattern (18 bp):
AGATGAGAAATGAATATG
Found at i:74311135 original size:25 final size:22
Alignment explanation
Indices: 74311101--74311145 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 22
74311091 TAGTTGAGGC
74311101 AATGTTGGTATGGTAGCTTAGCAT
1 AATGTTGGTAT-GT-GCTTAGCAT
74311125 AATGCTTGGTATGTGCTTAGC
1 AATG-TTGGTATGTGCTTAGC
74311146 TTCAAATTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 7 0.35
24 6 0.30
25 7 0.35
ACGTcount: A:0.22, C:0.11, G:0.29, T:0.38
Consensus pattern (22 bp):
AATGTTGGTATGTGCTTAGCAT
Found at i:74317536 original size:45 final size:45
Alignment explanation
Indices: 74317372--74317540 Score: 198
Period size: 45 Copynumber: 3.8 Consensus size: 45
74317362 ATTAGAAACG
* *
74317372 AGTAAGACCATGACTGAAAGATGTTATGGCATCACGATTCTATCA
1 AGTAAGACCATGACTGAAAGACGTTATGACATCACGATTCTATCA
* * * **
74317417 AGTAACACCATGACTGAAAGATGTTATGGCATCACGATT-TCATTG
1 AGTAAGACCATGACTGAAAGACGTTATGACATCACGATTCT-ATCA
* * * *
74317462 AGTAAAACCATGAATGAAATACGTTATGACATCACAATTCTATCA
1 AGTAAGACCATGACTGAAAGACGTTATGACATCACGATTCTATCA
*
74317507 AGTAAGACCAT-AGCTGAAAGACGTCATGACATCA
1 AGTAAGACCATGA-CTGAAAGACGTTATGACATCA
74317541 TGAATTAAAG
Statistics
Matches: 106, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
44 2 0.02
45 103 0.97
46 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.25
Consensus pattern (45 bp):
AGTAAGACCATGACTGAAAGACGTTATGACATCACGATTCTATCA
Found at i:74317540 original size:90 final size:90
Alignment explanation
Indices: 74317371--74317540 Score: 234
Period size: 90 Copynumber: 1.9 Consensus size: 90
74317361 TATTAGAAAC
* * * * *
74317371 GAGTAAGACCATGACTGAAAGATGTTATGGCATCACGATTCTATCAAGTAACACCATGACTGAAA
1 GAGTAAAACCATGAATGAAAGACGTTATGACATCACAATTCTATCAAGTAACACCATGACTGAAA
* * *
74317436 GATGTTATGGCATCACGATTTCATT
66 GACGTCATGACATCACGATTTCATT
* *
74317461 GAGTAAAACCATGAATGAAATACGTTATGACATCACAATTCTATCAAGTAAGACCAT-AGCTGAA
1 GAGTAAAACCATGAATGAAAGACGTTATGACATCACAATTCTATCAAGTAACACCATGA-CTGAA
74317525 AGACGTCATGACATCA
65 AGACGTCATGACATCA
74317541 TGAATTAAAG
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
89 1 0.01
90 68 0.99
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.25
Consensus pattern (90 bp):
GAGTAAAACCATGAATGAAAGACGTTATGACATCACAATTCTATCAAGTAACACCATGACTGAAA
GACGTCATGACATCACGATTTCATT
Found at i:74317562 original size:90 final size:90
Alignment explanation
Indices: 74317374--74317562 Score: 211
Period size: 90 Copynumber: 2.1 Consensus size: 90
74317364 TAGAAACGAG
* * * * *
74317374 TAAGACCATGACTGAAAGATGTTATGGCATCACGATTCTATCAAGTAACACCATGACTGAAAGAT
1 TAAGACCATGAATGAAAGACGTTATGACATCACAATTCTATCAAGTAACACCATGACTGAAAGAC
* * * ** *
74317439 GTTATGGCATCACGATTTCATTGAG
66 GTCATGACATCACGAATTCAAAGAA
* * *
74317464 TAAAACCATGAATGAAATACGTTATGACATCACAATTCTATCAAGTAAGACCAT-AGCTGAAAGA
1 TAAGACCATGAATGAAAGACGTTATGACATCACAATTCTATCAAGTAACACCATGA-CTGAAAGA
*
74317528 CGTCATGACATCATGAATT-AAAGAAA
65 CGTCATGACATCACGAATTCAAAG-AA
74317554 TAAGACCAT
1 TAAGACCAT
74317563 AGTTGAAAGA
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
89 3 0.04
90 78 0.96
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.25
Consensus pattern (90 bp):
TAAGACCATGAATGAAAGACGTTATGACATCACAATTCTATCAAGTAACACCATGACTGAAAGAC
GTCATGACATCACGAATTCAAAGAA
Done.