Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 222 of 235
Found at i:75307554 original size:24 final size:24
Alignment explanation
Indices: 75307527--75307574 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
75307517 CAATATTGAC
* * *
75307527 TTTGAGATGCTTATTTAAGAAAAG
1 TTTGAAATGCTCATTCAAGAAAAG
75307551 TTTGAAATGCTCATTCAAGAAAAG
1 TTTGAAATGCTCATTCAAGAAAAG
75307575 GTACAAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.40, C:0.08, G:0.19, T:0.33
Consensus pattern (24 bp):
TTTGAAATGCTCATTCAAGAAAAG
Found at i:75309677 original size:20 final size:21
Alignment explanation
Indices: 75309654--75309706 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
75309644 CTCATATTAG
*
75309654 ATATTAACATAACATA-GAAA
1 ATATTAACATAACAAATGAAA
* * *
75309674 ATATAAACCTAACAAATTAAA
1 ATATTAACATAACAAATGAAA
75309695 ATATTACACATA
1 ATATTA-ACATA
75309707 TTTGGATTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 13 0.52
21 8 0.32
22 4 0.16
ACGTcount: A:0.58, C:0.13, G:0.02, T:0.26
Consensus pattern (21 bp):
ATATTAACATAACAAATGAAA
Found at i:75313932 original size:72 final size:72
Alignment explanation
Indices: 75313808--75314046 Score: 385
Period size: 72 Copynumber: 3.3 Consensus size: 72
75313798 AAAATCATAT
** *
75313808 ATAAACAACTATTGATAAAACTA-ATTTA-GTATAAATAAGCAGAACATAAATTCAATATCCAAA
1 ATAAACAACTATTGATAAAACTAGA-TTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
*
75313871 TACCAAAC
65 AACCAAAC
*
75313879 ATAAACAACTATTAATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
75313944 ACCAAAC
66 ACCAAAC
75313951 ATAAACAA-TCATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
1 ATAAACAACT-ATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
75314015 AACCAAAC
65 AACCAAAC
*
75314023 ATAAATAACTATTGATAAAACTAG
1 ATAAACAACTATTGATAAAACTAG
75314047 TTTAGCATTG
Statistics
Matches: 157, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
71 26 0.17
72 130 0.83
73 1 0.01
ACGTcount: A:0.55, C:0.15, G:0.05, T:0.24
Consensus pattern (72 bp):
ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
ACCAAAC
Found at i:75315276 original size:594 final size:594
Alignment explanation
Indices: 75314148--75315335 Score: 2367
Period size: 594 Copynumber: 2.0 Consensus size: 594
75314138 CAAAGCTCTA
75314148 ATCTTGGGATTAATTGATAAAAACATAATTCGCTTGTCCTTATTGAGCAATAATTTAAGTGAGAA
1 ATCTTGGGATTAATTGATAAAAACATAATTCGCTTGTCCTTATTGAGCAATAATTTAAGTGAGAA
75314213 AAAGTATAGCGGACTAGCTTCTGGAACTTCTTCTGACATGCTGTCAAGCACTTTGACTGCTTGTG
66 AAAGTATAGCGGACTAGCTTCTGGAACTTCTTCTGACATGCTGTCAAGCACTTTGACTGCTTGTG
*
75314278 GAATACCATATGGATCCATAATAGGAGTCAAACTAGATGTGGCTTGACTCATATTGTTAGCTGCA
131 GAATACCATATAGATCCATAATAGGAGTCAAACTAGATGTGGCTTGACTCATATTGTTAGCTGCA
75314343 TTGCATAATTTTTCTATTTGACTGGACAATCTTGCAGCCCTCCAATTTGCTTTGAGGATTTCTTT
196 TTGCATAATTTTTCTATTTGACTGGACAATCTTGCAGCCCTCCAATTTGCTTTGAGGATTTCTTT
75314408 CTTCCAGTTTTAAAATGTGAACTTGATATCTCACGGTTTTTTTCTTTTTTGACCATTTCCATCAA
261 CTTCCAGTTTTAAAATGTGAACTTGATATCTCACGGTTTTTTTCTTTTTTGACCATTTCCATCAA
75314473 TTTGAACATTATTTGAAATGTGAATATCATTTCTCACATTTTCTTCTTCATTCTCTTAAGGTATT
326 TTTGAACATTATTTGAAATGTGAATATCATTTCTCACATTTTCTTCTTCATTCTCTTAAGGTATT
75314538 TCGTTGTTAACATCCTCAAAAAAATCACTACGGAGTGTACCAGAAAAAGGTGCCCATGCTTTATC
391 TCGTTGTTAACATCCTCAAAAAAATCACTACGGAGTGTACCAGAAAAAGGTGCCCATGCTTTATC
75314603 ACCTGTTGCAACTATCCCCATGAACATTTGGTCCAACTTCCCTTCGAATTCAAGATCAACGCCCG
456 ACCTGTTGCAACTATCCCCATGAACATTTGGTCCAACTTCCCTTCGAATTCAAGATCAACGCCCG
75314668 ATGTTCTAAATTTTTGAGCTTCAAGCACAACCTACATTTAAAGTGATAGTTTAATAACAGTAATT
521 ATGTTCTAAATTTTTGAGCTTCAAGCACAACCTACATTTAAAGTGATAGTTTAATAACAGTAATT
75314733 ATCAATAAC
586 ATCAATAAC
75314742 ATCTTGGGATTAATTGATAAAAACATAATTCGCTTGTCCTTATTGAGCAATAATTTAAGTGAGAA
1 ATCTTGGGATTAATTGATAAAAACATAATTCGCTTGTCCTTATTGAGCAATAATTTAAGTGAGAA
75314807 AAAGTATAGCGGACTAGCTTCTGGAACTTCTTCTGACATGCTGTCAAGCACTTTGACTGCTTGTG
66 AAAGTATAGCGGACTAGCTTCTGGAACTTCTTCTGACATGCTGTCAAGCACTTTGACTGCTTGTG
75314872 GAATACCATATAGATCCATAATAGGAGTCAAACTAGATGTGGCTTGACTCATATTGTTAGCTGCA
131 GAATACCATATAGATCCATAATAGGAGTCAAACTAGATGTGGCTTGACTCATATTGTTAGCTGCA
75314937 TTGCATAATTTTTCTATTTGACTGGACAATCTTGCAGCCCTCCAATTTGCTTTGAGGATTTCTTT
196 TTGCATAATTTTTCTATTTGACTGGACAATCTTGCAGCCCTCCAATTTGCTTTGAGGATTTCTTT
75315002 CTTCCAGTTTTAAAATGTGAACTTGATATCTCACGGTTTTTTTCTTTTTTGACCATTTCCATCAA
261 CTTCCAGTTTTAAAATGTGAACTTGATATCTCACGGTTTTTTTCTTTTTTGACCATTTCCATCAA
75315067 TTTGAACATTATTTGAAATGTGAATATCATTTCTCACATTTTCTTCTTCATTCTCTTAAGGTATT
326 TTTGAACATTATTTGAAATGTGAATATCATTTCTCACATTTTCTTCTTCATTCTCTTAAGGTATT
75315132 TCGTTGTTAACATCCTCAAAAAAATCACTACGGAGTGTACCAGAAAAAGGTGCCCATGCTTTATC
391 TCGTTGTTAACATCCTCAAAAAAATCACTACGGAGTGTACCAGAAAAAGGTGCCCATGCTTTATC
75315197 ACCTGTTGCAACTATCCCCATGAACATTTGGTCCAACTTCCCTTCGAATTCAAGATCAACGCCCG
456 ACCTGTTGCAACTATCCCCATGAACATTTGGTCCAACTTCCCTTCGAATTCAAGATCAACGCCCG
75315262 ATGTTCTAAATTTTTGAGCTTCAAGCACAACCTACATTTAAAGTGATAGTTTAATAACAGTAATT
521 ATGTTCTAAATTTTTGAGCTTCAAGCACAACCTACATTTAAAGTGATAGTTTAATAACAGTAATT
75315327 ATCAATAAC
586 ATCAATAAC
75315336 CTCATAAATA
Statistics
Matches: 593, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
594 593 1.00
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (594 bp):
ATCTTGGGATTAATTGATAAAAACATAATTCGCTTGTCCTTATTGAGCAATAATTTAAGTGAGAA
AAAGTATAGCGGACTAGCTTCTGGAACTTCTTCTGACATGCTGTCAAGCACTTTGACTGCTTGTG
GAATACCATATAGATCCATAATAGGAGTCAAACTAGATGTGGCTTGACTCATATTGTTAGCTGCA
TTGCATAATTTTTCTATTTGACTGGACAATCTTGCAGCCCTCCAATTTGCTTTGAGGATTTCTTT
CTTCCAGTTTTAAAATGTGAACTTGATATCTCACGGTTTTTTTCTTTTTTGACCATTTCCATCAA
TTTGAACATTATTTGAAATGTGAATATCATTTCTCACATTTTCTTCTTCATTCTCTTAAGGTATT
TCGTTGTTAACATCCTCAAAAAAATCACTACGGAGTGTACCAGAAAAAGGTGCCCATGCTTTATC
ACCTGTTGCAACTATCCCCATGAACATTTGGTCCAACTTCCCTTCGAATTCAAGATCAACGCCCG
ATGTTCTAAATTTTTGAGCTTCAAGCACAACCTACATTTAAAGTGATAGTTTAATAACAGTAATT
ATCAATAAC
Found at i:75317427 original size:18 final size:17
Alignment explanation
Indices: 75317395--75317429 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
75317385 GTTATGATTT
*
75317395 TATTTTAAAAAAATATA
1 TATTTAAAAAAAATATA
75317412 TATTTAAAATAAAATATA
1 TATTTAAAA-AAAATATA
75317430 CCTTTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TATTTAAAAAAAATATA
Found at i:75321110 original size:24 final size:24
Alignment explanation
Indices: 75321083--75321159 Score: 75
Period size: 24 Copynumber: 3.2 Consensus size: 24
75321073 ATATGGAGAC
* *
75321083 GAAGACGAGGGTGGAGAAGAAGAT
1 GAAGACGAGGGTCGAGATGAAGAT
* *
75321107 GAAGAGGATGGTCGAGATGAAGAT
1 GAAGACGAGGGTCGAGATGAAGAT
* * *
75321131 GAATAC-AGGGGTTGAGGTGAAGAT
1 GAAGACGA-GGGTCGAGATGAAGAT
75321155 GAAGA
1 GAAGA
75321160 TGATGATCAC
Statistics
Matches: 42, Mismatches: 10, Indels: 2
0.78 0.19 0.04
Matches are distributed among these distances:
23 1 0.02
24 41 0.98
ACGTcount: A:0.39, C:0.04, G:0.43, T:0.14
Consensus pattern (24 bp):
GAAGACGAGGGTCGAGATGAAGAT
Found at i:75321636 original size:20 final size:19
Alignment explanation
Indices: 75321608--75321650 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
75321598 CAATATTTAA
75321608 AAAAGTTAT-CAAAAATATTT
1 AAAAGTTATAC-AAAAT-TTT
*
75321628 AAAATTTATACAAAATTTT
1 AAAAGTTATACAAAATTTT
75321647 AAAA
1 AAAA
75321651 AATAAACAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 7 0.33
20 13 0.62
21 1 0.05
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (19 bp):
AAAAGTTATACAAAATTTT
Found at i:75323587 original size:16 final size:17
Alignment explanation
Indices: 75323566--75323597 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
75323556 CGTGGCAATT
75323566 TTAAAA-ATAGAAAAAG
1 TTAAAACATAGAAAAAG
75323582 TTAAAACATAGAAAAA
1 TTAAAACATAGAAAAA
75323598 AATTCATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.69, C:0.03, G:0.09, T:0.19
Consensus pattern (17 bp):
TTAAAACATAGAAAAAG
Found at i:75324124 original size:12 final size:12
Alignment explanation
Indices: 75324107--75324144 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
75324097 TACATGTAGA
75324107 AAATAATAAAAT
1 AAATAATAAAAT
*
75324119 AAATAATAAATT
1 AAATAATAAAAT
75324131 AAATTAA-AAAAT
1 AAA-TAATAAAAT
75324143 AA
1 AA
75324145 CTCTTAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
12 20 0.87
13 3 0.13
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (12 bp):
AAATAATAAAAT
Found at i:75333843 original size:21 final size:21
Alignment explanation
Indices: 75333817--75333860 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
75333807 AGACGAGCAA
* *
75333817 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
75333838 TACTCCAAAACAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
75333859 TA
1 TA
75333861 ACAGCCCAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:75342065 original size:23 final size:20
Alignment explanation
Indices: 75342018--75342068 Score: 59
Period size: 23 Copynumber: 2.4 Consensus size: 20
75342008 AGTGTGGTGT
75342018 TAATATGAATAATGAAAAAAA
1 TAATATG-ATAATGAAAAAAA
75342039 -AATATGATAATGTGAACAAAAA
1 TAATATGATAA--TGAA-AAAAA
75342061 TAATATGA
1 TAATATGA
75342069 GCAAAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
19 4 0.15
20 6 0.23
21 4 0.15
22 5 0.19
23 7 0.27
ACGTcount: A:0.61, C:0.02, G:0.12, T:0.25
Consensus pattern (20 bp):
TAATATGATAATGAAAAAAA
Found at i:75342592 original size:3 final size:3
Alignment explanation
Indices: 75342584--75342614 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
75342574 ATATAAAAGC
*
75342584 AAT AAT AAT AAT AAT AAT AAC AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
75342615 TGAAATTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:75344234 original size:127 final size:127
Alignment explanation
Indices: 75343987--75344252 Score: 282
Period size: 127 Copynumber: 2.1 Consensus size: 127
75343977 CTGCAACGTC
* * **** *
75343987 AGGGAGATAGGACTTGATGCGATCTGCTCCACTACTGCTTAGGAAGATAAGATTTGTGGTTTTAA
1 AGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACAATTTCAA
* * * ** * *** * *
75344052 TCTGCTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTATTGCTT
66 CCTGCTCCACTACAACTTTAGGGAGATAGGACTGGTGGCCTAAATCTACTCCACTACTGCTT
* *
75344114 AGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCG
1 AGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACAAT-TTCA
** ** *
75344179 ACCTGCTCCACTACTGC-TTAGGGAGATTTGACTGGTGGCCTAAATCTACTTCACTACTGCTT
65 ACCTGCTCCACTACAACTTTAGGGAGATAGGACTGGTGGCCTAAATCTACTCCACTACTGCTT
*
75344241 AGGAAGATAAGA
1 AGGGAGATAAGA
75344253 TTCGCCGTCT
Statistics
Matches: 112, Mismatches: 26, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
127 97 0.87
128 15 0.13
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (127 bp):
AGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACAATTTCAA
CCTGCTCCACTACAACTTTAGGGAGATAGGACTGGTGGCCTAAATCTACTCCACTACTGCTT
Found at i:75344280 original size:44 final size:43
Alignment explanation
Indices: 75344006--75344283 Score: 201
Period size: 44 Copynumber: 6.5 Consensus size: 43
75343996 GGACTTGATG
*
75344006 CGATCTGCTCCACTACTGCTTAGGAAGATAAGATTTG-TGGT-TT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAAGA-TTGCT-GTCTT
** * ** * * *
75344049 TAATCTGCTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTT
1 CGATCTGCTCCACTACTGC-TTAGGGAGATAAGATTGCTGTCTT
* *
75344093 CTG-TCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATG----
1 C-GATCTGCTCCACTACTGCTTAGGGAGATAAGA-TTGCTGTCTT
* **
75344133 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAAGAT-TGCTGTCTT
* ** * * * *
75344177 CGACCTGCTCCACTACTGCTTAGGGAGATTTGACTGGTGGCCT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATTGCTGTCTT
** * * * *
75344220 AAATCTACTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATT-GCTGTCTT
75344264 CGATCTGCTCCACTACTGCT
1 CGATCTGCTCCACTACTGCT
75344284 GTACAAGCCT
Statistics
Matches: 174, Mismatches: 49, Indels: 23
0.71 0.20 0.09
Matches are distributed among these distances:
39 2 0.01
40 31 0.18
43 60 0.34
44 81 0.47
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (43 bp):
CGATCTGCTCCACTACTGCTTAGGGAGATAAGATTGCTGTCTT
Found at i:75347041 original size:44 final size:44
Alignment explanation
Indices: 75346974--75349669 Score: 4179
Period size: 44 Copynumber: 61.4 Consensus size: 44
75346964 GGTGTCAACA
* *
75346974 ACTGCTTAGGGAGATAATATCTACCATCTTTGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* *
75347018 ACTTCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* ***** *** * * *
75347062 ACTGCTTAGGGAGATAGGAT-TGGTGGCTAAAATCTGTTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* * *
75347105 ACTGCTTAGGAAGATAAGAT-T-CGTCGTCTTCGATCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTAC--CATCTTCGACCTGCTCCACT
* * *
75347149 ACTGCTTACGGAGATAAGATCTACCATCTTTGACCTGCTCCGCT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* *
75347193 ACTGCTTAGGGAGATAGGATCTACCATCTTCAACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
** * ***** ** * *
75347237 ACTGCTTAATGAGATAGGA-CTGGTGGCTTAAATCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* * *
75347280 ACTGCTTAGGAAGATAAGAT-TCACCATCTTCAATCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCT-ACCATCTTCGACCTGCTCCACT
75347324 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* * *
75347368 ACTACTTAGGGAGATAGGATCTACCATCTTCGACCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
75347412 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* *
75347456 ACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
75347500 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* *
75347544 ACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
75347588 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* *
75347632 ACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
75347676 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* *
75347720 ACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
75347764 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* *
75347808 ACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
75347852 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* *
75347896 ACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
75347940 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* *
75347984 ACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
75348028 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* *
75348072 ACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
75348116 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* *
75348160 ACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
75348204 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* *
75348248 ACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
75348292 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* *
75348336 ACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
75348380 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* *
75348424 ACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
75348468 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* *
75348512 ACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
75348556 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* *
75348600 ACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
75348644 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* *
75348688 ACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
75348732 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* *
75348776 ACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
75348820 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* *
75348864 ACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
75348908 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* *
75348952 ACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
75348996 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* *
75349040 ACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
75349084 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* *
75349128 ACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
75349172 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
*
75349216 ACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* ***** *** * * *
75349260 ACTGCTTAGGGAGATAGGAT-TGGTGGCTAAAATCTGTTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* * *
75349303 ACTGCTTAGGAAGATAAGAT-T-CGTCGTCTTCGATCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTAC--CATCTTCGACCTGCTCCACT
* * *
75349347 ACTGCTTACGGAGATAAGATCTACCATCTTTGACCTGCTCCGCT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* *
75349391 ACTGCTTAGGGAGATAGGATCTACCATCTTCAACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
** * ***** ** * *
75349435 ACTGCTTAATGAGATAGGA-CTGGTGGCTTAAATCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* * *
75349478 ACTGCTTAGGAAGATAAGAT-TCACCATCTTCAATCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCT-ACCATCTTCGACCTGCTCCACT
75349522 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
* * *
75349566 ACTACTTAGGGAGATAGGATCTACCATCTTCGACCTGCTTCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
75349610 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
75349654 ACTGCTTAGGGAGATA
1 ACTGCTTAGGGAGATA
75349670 GGACTGGTGG
Statistics
Matches: 2428, Mismatches: 210, Indels: 28
0.91 0.08 0.01
Matches are distributed among these distances:
43 126 0.05
44 2296 0.95
45 4 0.00
46 2 0.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (44 bp):
ACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
Found at i:75349957 original size:44 final size:43
Alignment explanation
Indices: 75349889--75353159 Score: 827
Period size: 44 Copynumber: 75.8 Consensus size: 43
75349879 AGTGTCTTGG
* *
75349889 ATCTACTCCACTGTAATCTCAGGGAGATAAGATCTCTGGCTTCA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GCTTCA
* * * * *
75349933 ACCTGCTCCACTGTAACCCCAGGGAGATAAGATCTAAAATTCTTCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGCTTCA
* * * * *
75349979 ATCTACTCCACTGTAACCTCAGGGAGATAATA-C-CTGATGCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTCA
* * * * * ** *
75350020 ATCTACTCAACTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTCTGCTTCA
* * *
75350064 ATCCGCTCCACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-CT-GCTTCA
* * * *
75350108 ATCTGCTCCACTGTAACCTCAGGGAAATAAGATCTGAAATTCTTCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGCTTCA
* * * *
75350154 GTCTACTCCACTGTAACCTCAGGGAGATAAGA-CT-TGATGT-G
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCT-TCA
* ** * * * ** *
75350195 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCTTTTATTTTA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATC-TCTGCTTCA
* * * **
75350239 ATCCGCTCCACTGTAACTTCA--G-GAT-AG---TGT-CTTGG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTCA
* * *
75350274 ATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GCTTCA
* * * *
75350318 ACCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAAATTCTTCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGCTTCA
* * * *
75350364 ATCTACTCCACTGTAACCTCAGGGAGATAAGA-C-CTGATGCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTCA
** ** * * * * ** *
75350405 ATCAACTCTGCTATAACTTCAGGGAAATAAGATCTTTTATATTA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCT-TCA
* ** * * *
75350449 ATCCGCTCCACTGTAATATTAGAGAGATAGGAT-TACTAGCTTCAA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-CT-GCTTC-A
* * *
75350494 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGCTTCA
* * * * * *
75350540 GTCTACTCCACTGTAGCCTCAGGGAGATAAGA-C-CTGATGCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTCA
* * ** * * * * ** *
75350581 GTCTACTCTTCTGTAACTTCAGAGAGATGAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTCTGCTTCA
* * * *
75350625 ATCCGCTCCACTGTAATCTCAGGGAGATAGGAT-TACTAACTTCA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-CT-GCTTCA
* * * ** *
75350669 ATTTGCTCCACTGTGACCTCAGGGAGATAAGATCTGAAATTTTTCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGCTTCA
* * * * * *
75350715 GTCTACTCCACTGTAGCCTCAGGGAGATAAGA-C-CTGATGCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTCA
* * * * ** * ** *
75350756 ATCTACTCTACTGTAACTTCAGAGAGAGGAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTCTGCTTCA
* * * ** **
75350800 ATCCGCTCCACTGTAACTTCAGGGAGATAGGAT-AGTGTCTTGG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTG-CTTCA
* * *
75350843 ATCTGCTCCGCTGTAATCTCAGGGAGATCAGATCTCTGGCTTCA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GCTTCA
* * * * *
75350887 ATCTGCTCCACAGTAACCTTAGGGAGATAAGATCTGAAATTCTTCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGCTTCA
* * * * * * *
75350933 GTCTACTCCACTGTAACCTTAGGGAGATAAGA-C-ATGATGCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTCA
* ** * * * ** *
75350974 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTCTGCTTCA
* * * * **
75351018 ATCCGATCCACTGTAACTTCA--G-GAT-AG---TGT-CTTGG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTCA
* * * * *
75351053 ATCTACTCCGCTGTAATCTCAAGAAGATAAGATCTCTAGCTTCA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GCTTCA
* * * * * * *
75351097 ACCTACTTCACTGTAACCTCAGGGAGATAAGATTTGAAATTCTTCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGCTTCA
* * * *
75351143 ATCTACTCCACTGTAACCTCAGGGAGATAAGA-C-CTGATGCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTCA
* ** * * * * ** *
75351184 ATCTACTCTGCTATAACTTCAGAGAGATAAGATCATTTATTTTA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATC-TCTGCTTCA
* * *
75351228 ATCCGCTCCACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-CT-GCTTCA
* * * * ** *
75351272 ATCTGCTCCACTGTAACATCAAGGAGATAAGATTTGAAATTTTTCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGCTTCA
* ** * * * * * * * *
75351318 GTCTATTACACTGTAATCTCAGAGATATAATA-C-CTGATGCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTCA
* ** * * * * ** *
75351359 ATCTACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTCTGCTTCA
* *
75351403 AT-TCGCTCCACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCA
1 ATCT-GCTCCACTGTAACCTCAGGGAGATAAGATCT-CT-GCTTCA
* * ** *
75351447 ATCTGCTCCACTGTAACCTCAGGGATATAAGATCTGAAATTTTTCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGCTTCA
* * * * * *
75351493 GTCTACTCCACTGTAGCCTCAGGGAGATAAGA-C-CTGATGCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTCA
* * * * * * ** *
75351534 ATCTACTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTCTGCTTCA
* * * ** **
75351578 ATCCGCTCCACTGTAACTTCAGGGAGATAGGAT-AGTGTCTTGG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTG-CTTCA
** *
75351621 ATCTGCTCCGTTGTAATCTCAGGGAGATAAGATCTCTGGCTTCA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GCTTCA
* * *
75351665 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGCTTCA
* * * * * *
75351711 GTCTACTCCACTGTAACCTCAGGGAGATAAGA--TATGATGCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTCA
* ** * * * ** *
75351752 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTTA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATC-TCTGCTTCA
* * *
75351796 ATCCGCTCCACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-CT-GCTTCA
* * * * ** *
75351840 ATCTGCTCCACTGTAACATCAAGGAGATAAGATTTGAAATTTTTCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGCTTCA
* ** * * * * * * * *
75351886 GTCTATTACACTGTAATCTCAGAGATATAATA-C-CTGATGCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTCA
* ** * * * * ** *
75351927 ATCTACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTCTGCTTCA
* * **
75351971 AT-TCGCTCCACTGTAACTTCA--G-GAT-AG---TGT-CTTGG
1 ATCT-GCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTCA
* * * * ** *
75352006 ATCTGCTCCACTGTAACATCAAGGAGATAAGATTTGAAATTTTTCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGCTTCA
* ** * * * * * * * * *
75352052 GTCTATTACACTGTAATCTCAGAGATATAATA-C-CGGATGCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTCA
* ** * * * * * ** *
75352093 ATCTACTCTGCTATAACTTCAGAGAGATTAGATTCTTTATTTTA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGA-TCTCTGCTTCA
* * * **
75352137 ATCCGCTCCACTGTAACTTCA--G-GAT-AG---TGT-CTTGG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTCA
* * *
75352172 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGCTTCA
* * * * * *
75352218 GTCTACTCCACTGTAACCTCAGGGAGATAAGA--TATGATGCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTCA
* ** * * * ** *
75352259 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTTA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATC-TCTGCTTCA
* * **
75352303 AT-TCGCTCCACTGTAACTTCA--G-GAT-AG---TGT-CTTGG
1 ATCT-GCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTCA
* * *
75352338 ATCTACTCCACTGTAATCTTAGGGAGATAAGATCTCTGGCTTCA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GCTTCA
* * * *
75352382 ACCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGCTTCA
* * * * *
75352428 ACCTACTCCACTGTAACCTCAGGGAGATAAGA-C-CTGATGCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTCA
** ** * * ** * ** *
75352469 ATCTAATCTGCTATAACTTCAAAGAGATAAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTCTGCTTCA
* * * *
75352513 ATCCGCTCCACTGTAATCTTAGGGAGATAGGAT-TACTAGCTTCA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-CT-GCTTCA
* * **
75352557 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAAATTCTTTG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGCTTCA
* * * * *
75352603 ATCTACTCCACTATAACCTCAGGGAGATAAGA-C-CTGATGCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTCA
* * * * ** * * ** *
75352644 ATCTACTCTACTATAACTTCAGAAAAATAAGATCTTTTATATTA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCT-TCA
* * * ** *
75352688 ATCCGCTCCACTGTAATCTTATAGAGATAGGAT-TACTAGCTTCA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-CT-GCTTCA
* * ** *
75352732 ATCTGCTCCACTGTAACCTCAGGGAGATAAAATCTGAAATTTTTCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGCTTCA
* * * * * * *
75352778 GTCTACTCCACTGTAGCCTCAGGGAAATAAGA-C-CTGATGCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTCA
* * * * * * * ** *
75352819 GTCTACTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTCTGCTTCA
* * * ** **
75352863 ATCCGCTCCACTGTAACTTCAGGGAGATAGGAT-AGTGTCTTGG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTG-CTTCA
* *
75352906 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GCTTCA
* * *
75352950 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGCTTCA
* * * * * *
75352996 GTCTACTCCACTATAACCTCAGGGAGATAAGA-C-CTGATGCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTCA
* ** * * * ** *
75353037 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTCTGCTTCA
* * * *
75353081 ATATTCTCCACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-CT-GCTTCA
* *
75353125 ATCTGCTCCGCTGTAAACTCAGGGAGATAAGATCT
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT
75353160 GAAATTCTTC
Statistics
Matches: 2312, Mismatches: 733, Indels: 363
0.68 0.22 0.11
Matches are distributed among these distances:
35 93 0.04
36 12 0.01
37 4 0.00
38 15 0.01
39 10 0.00
40 10 0.00
41 516 0.22
42 28 0.01
43 119 0.05
44 891 0.39
45 56 0.02
46 531 0.23
47 25 0.01
48 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (43 bp):
ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTCA
Found at i:75350108 original size:175 final size:175
Alignment explanation
Indices: 75349894--75350254 Score: 589
Period size: 175 Copynumber: 2.1 Consensus size: 175
75349884 CTTGGATCTA
* *
75349894 CTCCACTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAACCTGCTCCACTGTAACCCCAGGGAG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTCTAGCTTCAACCTGCTCCACTGTAACCCCAGGGAA
*
75349959 ATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAATACCTGATGCGATCT
66 ATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCT
75350024 ACTCAACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
131 ACTCAACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
* * *
75350069 CTCCACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGA
1 CTCCACTGTAATCTCAGGGAGATAAGATCT-CTAGCTTCAACCTGCTCCACTGTAACCCCAGGGA
* * * *
75350133 AATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGATGTGATC
65 AATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
** *
75350198 TACTCTGCTGTAACTTCAGAGAGATAAGATCTTTTATTTTAATCCG
130 TACTCAACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
75350244 CTCCACTGTAA
1 CTCCACTGTAA
75350255 CTTCAGGATA
Statistics
Matches: 172, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
174 1 0.01
175 171 0.99
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (175 bp):
CTCCACTGTAATCTCAGGGAGATAAGATCTCTAGCTTCAACCTGCTCCACTGTAACCCCAGGGAA
ATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCT
ACTCAACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
Found at i:75350219 original size:385 final size:383
Alignment explanation
Indices: 75349744--75351811 Score: 2406
Period size: 385 Copynumber: 5.3 Consensus size: 383
75349734 TCTCCACCTT
* * * *
75349744 GGGAGATAAGATCTGAAATTCCTCGGTCTATTCCACTGTAATCTCAGAGAGATAAGACCTGATGC
1 GGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGC
* *
75349809 GATCTACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCAACTGTAACTTC
66 GATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTC
*
75349874 AGGATAGTGTCTTGGATCTACTCCACTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAACCTGC
131 AGGATAGTGTCTTGGATCTACTCCACTGTAATCTCAGGGAGATAAGATCTCT-GCTTCAACCTAC
*
75349939 TCCACTGTAACCCCAGGGAGATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGA
195 TCCACTGTAACCTCAGGGAGATAAGATCT-AAATTCTTCGATCTACTCCACTGTAACCTCAGGGA
* * * *
75350004 GATAATACCTGATGCGATCTACTCAACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
259 GATAATACCTGATGCGATCCACTCCACTGTAACTTCAGGGAGATAAGATCGTTTATTTTAATCCG
75350069 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCA
324 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCA
* * *
75350129 GGGAAATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGATGT
1 GGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGC
*
75350194 GATCTACTCTGCTGTAACTTCAGAGAGATAAGATCTTTTATTTTAATCCGCTCCACTGTAACTTC
66 GATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTC
* *
75350259 AGGATAGTGTCTTGGATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAACCTGC
131 AGGATAGTGTCTTGGATCTACTCCACTGTAATCTCAGGGAGATAAGATCTCT-GCTTCAACCTAC
75350324 TCCACTGTAACCTCAGGGAGATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGA
195 TCCACTGTAACCTCAGGGAGATAAGATCT-AAATTCTTCGATCTACTCCACTGTAACCTCAGGGA
* * ** * * * *
75350389 GATAAGACCTGATGCGATCAACTCTGCTATAACTTCAGGGAAATAAGATCTTTTATATTAATCCG
259 GATAATACCTGATGCGATCCACTCCACTGTAACTTCAGGGAGATAAGATCGTTTATTTTAATCCG
* * *
75350454 CTCCACTGTAATATTAGAGAGATAGGATTACTAGCTTCAAATCTGCTCCACTGTAACCTCA
324 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC-AATCTGCTCCACTGTAACCTCA
*
75350515 GGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGC
1 GGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGC
* * *
75350580 GGTCTACTCTTCTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCCGCTCCACTGTAA-TCT
66 GATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACT-T
* ** * * * * *
75350644 CAGGGAGATAGGATTACTAACTTCAATTTGCTCCACTGTGACCTCAGGGAGATAAGATCTGAAAT
130 CA--G-GATA-G--T-GT--CTTGGATCTACTCCACTGTAATCTCAGGGAGATAAGATCT---CT
** *** * * * * *
75350709 TTTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCT-GA---TGCGATCTACTCTACTGT
183 GCTTCAACCTACTCCACTGTAACCTCAGGGAGATAAGATCTAAATTCTTCGATCTACTCCACTGT
* * * * *** * * *
75350770 AACTTCAGAGAGAGGAGAT-CCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATA
248 AACCTCAGGGAGA-TA-ATACC-TGA-TGCGATCCACTCCACTGTAACTTCAGGGAGATAAGATC
* * ** * * *
75350834 GTGT-CTTGGATCTGCTCCGCTGTAATCTCAGGGAGATCA-GATCT-CTGGCTTCAATCTGCTCC
309 GTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGAT-AGGAT-TACTAGCTTCAATCTGCTCC
* *
75350896 ACAGTAACCTTA
372 ACTGTAACCTCA
* *
75350908 GGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTTAGGGAGATAAGACATGATGC
1 GGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGC
*
75350973 GATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGATCCACTGTAACTTC
66 GATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTC
* * *
75351038 AGGATAGTGTCTTGGATCTACTCCGCTGTAATCTCAAGAAGATAAGATCTCTAGCTTCAACCTAC
131 AGGATAGTGTCTTGGATCTACTCCACTGTAATCTCAGGGAGATAAGATCTCT-GCTTCAACCTAC
* *
75351103 TTCACTGTAACCTCAGGGAGATAAGATTTGAAATTCTTCGATCTACTCCACTGTAACCTCAGGGA
195 TCCACTGTAACCTCAGGGAGATAAGATCT-AAATTCTTCGATCTACTCCACTGTAACCTCAGGGA
* * ** * * *
75351168 GATAAGACCTGATGCGATCTACTCTGCTATAACTTCAGAGAGATAAGATCATTTATTTTAATCCG
259 GATAATACCTGATGCGATCCACTCCACTGTAACTTCAGGGAGATAAGATCGTTTATTTTAATCCG
*
75351233 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACATCA
324 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCA
* * * * * * * * *
75351293 AGGAGATAAGATTTGAAATTTTTCGGTCTATTACACTGTAATCTCAGAGATATAATACCTGATGC
1 GGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGC
* *
75351358 GATCTACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATTCGCTCCACTGTAA-TCT
66 GATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACT-T
* ** * * * *
75351422 CAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGATATAAGATCTGAAAT
130 CA--G-GATA-G--T-GT--CTTGGATCTACTCCACTGTAATCTCAGGGAGATAAGATCT---CT
** *** * * * * *
75351487 TTTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCT-GA---TGCGATCTACTCTACTGT
183 GCTTCAACCTACTCCACTGTAACCTCAGGGAGATAAGATCTAAATTCTTCGATCTACTCCACTGT
* * * *** * * *
75351548 AACTTCAGAGAGATGAGAT-CCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATA
248 AACCTCAGGGAGAT-A-ATACC-TGA-TGCGATCCACTCCACTGTAACTTCAGGGAGATAAGATC
* * ** * ** * *
75351612 GTGT-CTTGGATCTGCTCCGTTGTAATCTCAGGGAGATAAGATCT-CTGGCTTCAATCTGCTCCA
309 GTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCAATCTGCTCCA
75351675 CTGTAACCTCA
373 CTGTAACCTCA
**
75351686 GGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGATATGATGC
1 GGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGC
*
75351751 GATCTACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAA
66 GATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAA
75351812 TCTCAGGGAG
Statistics
Matches: 1419, Mismatches: 215, Indels: 90
0.82 0.12 0.05
Matches are distributed among these distances:
381 1 0.00
382 32 0.02
384 64 0.05
385 515 0.36
386 147 0.10
387 29 0.02
388 5 0.00
389 6 0.00
390 5 0.00
391 30 0.02
392 32 0.02
393 320 0.23
394 101 0.07
395 65 0.05
396 32 0.02
397 34 0.02
398 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (383 bp):
GGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGC
GATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTC
AGGATAGTGTCTTGGATCTACTCCACTGTAATCTCAGGGAGATAAGATCTCTGCTTCAACCTACT
CCACTGTAACCTCAGGGAGATAAGATCTAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGA
TAATACCTGATGCGATCCACTCCACTGTAACTTCAGGGAGATAAGATCGTTTATTTTAATCCGCT
CCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCA
Found at i:75350261 original size:85 final size:85
Alignment explanation
Indices: 75349984--75350261 Score: 281
Period size: 85 Copynumber: 3.2 Consensus size: 85
75349974 CTTCGATCTA
* * *
75349984 CTCCACTGTAACCTCAGGGAGATAATACCTGATGCGATCTACTCAACTGTAACTTCAGAGAGATA
1 CTCCACTGTAACCTCAGGGAGATAAGACTTGATGTGATCTACTCAACTGTAACTTCAGAGAGATA
*
75350049 AGATCCTTTATTTTAATCCG
66 AGATCTTTTATTTTAATCCG
* * * * * * *
75350069 CTCCACTGTAATCTCAGGGAGATAGGA-TT-ACTAGCTTCAATCTGCTCCACTGTAACCTCAGGG
1 CTCCACTGTAACCTCAGGGAGATAAGACTTGA-T-G--T-GATCTACTCAACTGTAACTTCAGAG
* *** ** **
75350132 AAATAAGATCTGAAATTCTTCGGTCTA
61 AGATAAGATCTTTTATT-TT-AATCCG
**
75350159 CTCCACTGTAACCTCAGGGAGATAAGACTTGATGTGATCTACTCTGCTGTAACTTCAGAGAGATA
1 CTCCACTGTAACCTCAGGGAGATAAGACTTGATGTGATCTACTCAACTGTAACTTCAGAGAGATA
75350224 AGATCTTTTATTTTAATCCG
66 AGATCTTTTATTTTAATCCG
*
75350244 CTCCACTGTAACTTCAGG
1 CTCCACTGTAACCTCAGG
75350262 ATAGTGTCTT
Statistics
Matches: 148, Mismatches: 36, Indels: 18
0.73 0.18 0.09
Matches are distributed among these distances:
83 1 0.01
84 2 0.01
85 44 0.30
86 2 0.01
87 32 0.22
88 33 0.22
89 2 0.01
90 28 0.19
91 3 0.02
92 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (85 bp):
CTCCACTGTAACCTCAGGGAGATAAGACTTGATGTGATCTACTCAACTGTAACTTCAGAGAGATA
AGATCTTTTATTTTAATCCG
Found at i:75350326 original size:79 final size:79
Alignment explanation
Indices: 75350194--75350340 Score: 190
Period size: 79 Copynumber: 1.9 Consensus size: 79
75350184 GACTTGATGT
* * * * * *
75350194 GATCTACTCTGCTGTAACTTCAGAGAGATAAGATCTTTTATTTTAATCCGCTCCACTGTAACTTC
1 GATCTACTCCGCTGTAACTTCAGAGAGATAAGATCTCTGACTTCAATCCGCTCCACTGTAACCTC
75350259 AGGATAGTGTCTTG
66 AGGATAGTGTCTTG
* *
75350273 GATCTACTCCGCTGTAA-TCTCAGGGAGATAAGATCTCTGGCTTCAA-CCTGCTCCACTGTAACC
1 GATCTACTCCGCTGTAACT-TCAGAGAGATAAGATCTCTGACTTCAATCC-GCTCCACTGTAACC
75350336 TCAGG
64 TCAGG
75350341 GAGATAAGAT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
78 3 0.05
79 55 0.95
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.32
Consensus pattern (79 bp):
GATCTACTCCGCTGTAACTTCAGAGAGATAAGATCTCTGACTTCAATCCGCTCCACTGTAACCTC
AGGATAGTGTCTTG
Found at i:75350334 original size:210 final size:210
Alignment explanation
Indices: 75350069--75350464 Score: 650
Period size: 210 Copynumber: 1.9 Consensus size: 210
75350059 TTTTAATCCG
* *
75350069 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAA
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAACCTGCTCCACTGTAACCTCAGGGAA
* * * * *
75350134 ATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGATGTGATCT
66 ATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCA
* * *
75350199 ACTCTGCTGTAACTTCAGAGAGATAAGATCTTTTATTTTAATCCGCTCCACTGTAACTTCAGGAT
131 ACTCTGCTATAACTTCAGAGAAATAAGATCTTTTATATTAATCCGCTCCACTGTAACTTCAGGAT
75350264 AGTGTCTTGGATCTA
196 AGTGTCTTGGATCTA
* *
75350279 CTCCGCTGTAATCTCAGGGAGATAAGATCT-CTGGCTTCAACCTGCTCCACTGTAACCTCAGGGA
1 CTCCACTGTAATCTCAGGGAGATAAGAT-TACTAGCTTCAACCTGCTCCACTGTAACCTCAGGGA
*
75350343 GATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
65 AATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
*
75350408 AACTCTGCTATAACTTCAGGGAAATAAGATCTTTTATATTAATCCGCTCCACTGTAA
130 AACTCTGCTATAACTTCAGAGAAATAAGATCTTTTATATTAATCCGCTCCACTGTAA
75350465 TATTAGAGAG
Statistics
Matches: 171, Mismatches: 14, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
210 170 0.99
211 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (210 bp):
CTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAACCTGCTCCACTGTAACCTCAGGGAA
ATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCA
ACTCTGCTATAACTTCAGAGAAATAAGATCTTTTATATTAATCCGCTCCACTGTAACTTCAGGAT
AGTGTCTTGGATCTA
Found at i:75350742 original size:175 final size:175
Alignment explanation
Indices: 75350279--75350877 Score: 855
Period size: 175 Copynumber: 3.4 Consensus size: 175
75350269 CTTGGATCTA
* * * *
75350279 CTCCGCTGTAATCTCAGGGAGATAAGATCT-CTGGCTTCAACCTGCTCCACTGTAACCTCAGGGA
1 CTCCACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGA
* * *
75350343 GATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
65 GATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATC
* * * * * * * *
75350408 AACTCTGCTATAACTTCAGGGAAATAAGATCTTTTATATTAATCCG
130 TACTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCCG
* * *
75350454 CTCCACTGTAATATTAGAGAGATAGGATTACTAGCTTCAAATCTGCTCCACTGTAACCTCAGGGA
1 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC-AATCTGCTCCACTGTAACCTCAGGGA
*
75350519 GATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGGTC
65 GATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATC
*
75350584 TACTCTTCTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCCG
130 TACTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCCG
* * *
75350630 CTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATTTGCTCCACTGTGACCTCAGGGAG
1 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
*
75350695 ATAAGATCTGAAATTTTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATCT
66 ATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATCT
*
75350760 ACTCTACTGTAACTTCAGAGAGAGGAGATCCTTTATTTTAATCCG
131 ACTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCCG
* ** * *
75350805 CTCCACTGTAA-CTTCAGGGAGATAGGA-TAGT-GTCTTGGATCTGCTCCGCTGTAATCTCAGGG
1 CTCCACTGTAATC-TCAGGGAGATAGGATTACTAG-CTTCAATCTGCTCCACTGTAACCTCAGGG
*
75350867 AGATCAGATCT
64 AGATAAGATCT
75350878 CTGGCTTCAA
Statistics
Matches: 382, Mismatches: 38, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
174 38 0.10
175 186 0.49
176 158 0.41
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (175 bp):
CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
ATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATCT
ACTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCCG
Found at i:75350896 original size:218 final size:217
Alignment explanation
Indices: 75350629--75351260 Score: 924
Period size: 210 Copynumber: 2.9 Consensus size: 217
75350619 ATTTTAATCC
* * * *
75350629 GCTCCACTGTAATCTCAGGGAGATAGGAT-TACTAACTTCAATTTGCTCCACTGTGACCTCAGGG
1 GCTCCGCTGTAATCTCAGGGAGATA-GATCT-CTAGCTTCAATCTGCTCCACTGTAACCTCAGGG
* *
75350693 AGATAAGATCTGAAATTTTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGAT
64 AGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGAT
* **
75350758 CTACTCTACTGTAACTTCAGAGAGAGGAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGG
129 CTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGG
75350823 GAGATAGGATAGTGTCTTGGATCT
194 GAGATAGGATAGTGTCTTGGATCT
* * *
75350847 GCTCCGCTGTAATCTCAGGGAGATCAGATCTCTGGCTTCAATCTGCTCCACAGTAACCTTAGGGA
1 GCTCCGCTGTAATCTCAGGGAGAT-AGATCTCTAGCTTCAATCTGCTCCACTGTAACCTCAGGGA
* *
75350912 GATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTTAGGGAGATAAGACATGATGCGATC
65 GATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
*
75350977 TACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGATCCACTGTAACTTC----
130 TACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGG
75351038 ----AGGATAGTGTCTTGGATCT
195 AGATAGGATAGTGTCTTGGATCT
* * * * * *
75351057 ACTCCGCTGTAATCTCAAGAAGATAAGATCTCTAGCTTCAACCTACTTCACTGTAACCTCAGGGA
1 GCTCCGCTGTAATCTCAGGGAGAT-AGATCTCTAGCTTCAATCTGCTCCACTGTAACCTCAGGGA
* *
75351122 GATAAGATTTGAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
65 GATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
* *
75351187 TACTCTGCTATAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAA-TCTCAGG
130 TACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACT-TCAGG
75351251 GAGATAGGAT
194 GAGATAGGAT
75351261 TACTAGCTTC
Statistics
Matches: 371, Mismatches: 32, Indels: 22
0.87 0.08 0.05
Matches are distributed among these distances:
209 1 0.00
210 191 0.51
218 177 0.48
219 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (217 bp):
GCTCCGCTGTAATCTCAGGGAGATAGATCTCTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
ATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCT
ACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGA
GATAGGATAGTGTCTTGGATCT
Found at i:75350988 original size:131 final size:129
Alignment explanation
Indices: 75350469--75353156 Score: 674
Period size: 131 Copynumber: 20.8 Consensus size: 129
75350459 CTGTAATATT
* *
75350469 AGAGAGATAGGATTACTAGCTTCAAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT
1 AGAGAGATAAGA-TCCT-GCTTC-AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-AAAT
** * * * **
75350534 TCTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTG-ATGCGGTCTACTCTTCTGTAAC
62 TCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGACATGAATGCGATCTACTCCGCTGTAAC
75350598 TTC
127 TTC
* ** * * * *
75350601 AGAGAGATGAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGAT-TACTAA-
1 AGAGAGATAAGATCC--TGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTA--AAT
* * * * * *
75350664 -CTTCAATTTGCTCCACTGTGACCTCAGGGAGATAAGATC-TGAAATTTTTCGGTCTACTCCACT
62 TCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGA-CATG-AA---TGCGATCTACTCCGCT
* *
75350727 GTAGCCTC
122 GTAACTTC
* * * * * * * * ** **
75350735 AGGGAGATAAGA-CCTGATGCGATCTACTCTACTGTAACTTCAGAGAGAGGAGATCCTTTATT-T
1 AGAGAGATAAGATCCTGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTAAATTCT
** * * * ** *
75350798 T-AATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTG-GATCTGCTCCGCTGTAA-T
65 TCAATCTACTCCACTGTAACCTCAGGGAGATAAGACA-TG-AATGCGATCTACTCCGCTGTAACT
75350860 CTC
128 -TC
* * * *
75350863 AGGGAGATCAGATCTCTGGCTTCAATCTGCTCCACAGTAACCTTAGGGAGATAAGATCTGAAATT
1 AGAGAGATAAGATC-CT-GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-AAATT
** * *
75350928 CTTCGGTCTACTCCACTGTAACCTTAGGGAGATAAGACATG-ATGCGATCTACTCTGCTGTAACT
63 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGACATGAATGCGATCTACTCCGCTGTAACT
75350992 TC
128 TC
** * * * * *
75350994 AGAGAGATAAGATCCTTTATTTTAATCCGATCCACTGTAACTTCA--G-GAT-AG---T---GTC
1 AGAGAGATAAGATCC--TGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAATTC
** * * * * * * * * * * *
75351049 TTGGATCTACTCCGCTGTAATCTCAAGAAGATAAGATC-TCTAGCTTCAACCTACTTCACTGTAA
64 TTCAATCTACTCCACTGTAACCTCAGGGAGATAAGA-CAT-GA-ATGCGATCTACTCCGCTGTAA
*
75351113 CCTC
126 CTTC
* * * * * *
75351117 AGGGAGATAAGAT-TTGAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCT-GA
1 AGAGAGATAAGATCCTG-----CTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAA
* * ** * * * * * *** ** *
75351180 ---TGCGATCTACTCTGCTATAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGT
61 TTCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGA-CA-TGAATGCGATCTACTCCGCTGT
75351242 AA-TCTC
124 AACT-TC
* * * * * *
75351248 AGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACATCAAGGAGATAAGATTTGAAATT
1 AGAGAGATAAGA-TCCT-GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-AAATT
* ** * * * * * * * * *
75351313 TTTCGGTCTATTACACTGTAATCTCAGAGATATAATACCTG-ATGCGATCTACTCTGCTATAACT
63 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGACATGAATGCGATCTACTCCGCTGTAACT
75351377 TC
128 TC
** * * * *
75351379 AGAGAGATAAGATCCTTTATTTTAAT-TCGCTCCACTGTAATCTCAGGGAGATAGGAT-T-ACTA
1 AGAGAGATAAGATCC--TGCTTCAATCT-GCTCCACTGTAACCTCAGGGAGATAAGATCTAAAT-
* * * * * *
75351441 GCTTCAATCTGCTCCACTGTAACCTCAGGGATATAAGATC-TGAAATTTTTCGGTCTACTCCACT
62 TCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGA-CATG-AA---TGCGATCTACTCCGCT
* *
75351505 GTAGCCTC
122 GTAACTTC
* * * * * * * * * **
75351513 AGGGAGATAAGA-CCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATGAGATCCTTTATT-T
1 AGAGAGATAAGATCCTGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTAAATTCT
** * * * ** * *
75351576 T-AATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTG-GATCTGCTCCGTTGTAA-T
65 TCAATCTACTCCACTGTAACCTCAGGGAGATAAGACA-TG-AATGCGATCTACTCCGCTGTAACT
75351638 CTC
128 -TC
*
75351641 AGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATT
1 AGAGAGATAAGATC-CT-GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-AAATT
** * *
75351706 CTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGATATG-ATGCGATCTACTCTGCTGTAACT
63 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGACATGAATGCGATCTACTCCGCTGTAACT
75351770 TC
128 TC
* ** * * * * * *
75351772 AGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGAT-T-ACTAG
1 AGAGAGATAAGATC--CTGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAAT-T
* * * ** * * * * *
75351835 CTTCAATCTGCTCCACTGTAACATCAAGGAGATAAGATTTGAAATTTTTCGGTCTATTACACTGT
63 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGACATG-AA---TGCGATCTACTCCGCTGT
75351900 AA-TCTC
124 AACT-TC
* * * * * * ** * * * **
75351906 AGAGATATAATA-CCTGATGCGATCTACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATT-T
1 AGAGAGATAAGATCCTGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTAAATTCT
* * ** * * *
75351969 T-AAT-TCGCTCCACTGTAACTTCA--G-GAT-AG---TGTCTTG-GATCTGCTCCACTGTAACA
65 TCAATCT-ACTCCACTGTAACCTCAGGGAGATAAGACATG-AATGCGATCTACTCCGCTGTAACT
75352024 TC
128 TC
* * ** ** * * * * * ***
75352026 A-AGGAGATAAGAT-TTGAAATTTTTCGGTCTATTACACTGTAATCTCAGAGATATAATA-CCGG
1 AGA-GAGATAAGATCCTG-----CTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAA
* * ** * * * * * * * *** ** *
75352088 A---TGCGATCTACTCTGCTATAACTTCAGAGAGATTAGATTCTTTATTTTAATCCGCTCCACTG
60 ATTCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGA--CATGAATGCGATCTACTCCGCTG
75352150 TAACTTC
123 TAACTTC
* **
75352157 --AG-GAT-AG-T-GT-CTTGGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCT
1 AGAGAGATAAGATCCTGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-AAATTCT
** * *
75352215 TCGGTCTACTCCACTGTAACCTCAGGGAGATAAGATATG-ATGCGATCTACTCTGCTGTAACTTC
65 TCAATCTACTCCACTGTAACCTCAGGGAGATAAGACATGAATGCGATCTACTCCGCTGTAACTTC
* ** * * *
75352279 AGAGAGATAAGATCATTTATTTTAAT-TCGCTCCACTGTAACTTCA--G-GAT-AG---T---GT
1 AGAGAGATAAGATC--CTGCTTCAATCT-GCTCCACTGTAACCTCAGGGAGATAAGATCTAAATT
** * * * ** * * * * *
75352333 CTTGGATCTACTCCACTGTAATCTTAGGGAGATAAGATCTCTGGCTTCAACCTGCTCCACTGTAA
63 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGA-C-ATGAATGCGATCTACTCCGCTGTAA
*
75352398 CCTC
126 CTTC
* * * * * *
75352402 AGGGAGATAAGAT-CTGAAATTCTTCGACCTACTCCACTGTAACCTCAGGGAGATAAGACCT-GA
1 AGAGAGATAAGATCCTG-----CTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAA
* * * ** * * ** * * * *** ** *
75352465 ---TGCGATCTAATCTGCTATAACTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGT
61 TTCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGA--CATGAATGCGATCTACTCCGCTGT
75352527 AATCTT-
124 AA-CTTC
* * *
75352533 AGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAAATT
1 AGAGAGATAAGA-TCCT-GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-AAATT
** * * ** *
75352598 CTTTGATCTACTCCACTATAACCTCAGGGAGATAAGACCTG-ATGCGATCTACTCTACTATAACT
63 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGACATGAATGCGATCTACTCCGCTGTAACT
75352662 TC
128 TC
* * * ** * * * * ** * * *
75352664 AGAAAAATAAGATCTTTTATATTAATCCGCTCCACTGTAATCTTATAGAGATAGGAT-T-ACTAG
1 AGAGAGATAAGATC-CTGCT-TCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAAT-T
* * * * *
75352727 CTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAAATC-TGAAATTTTTCGGTCTACTCCACTG
63 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGA-CATG-AA---TGCGATCTACTCCGCTG
* *
75352791 TAGCCTC
123 TAACTTC
* * * * ** * * * * * **
75352798 AGGGAAATAAGA-CCTGATGCGGTCTACTCTACTGTAACTTCAGAGAGATGAGATCCTTTATT-T
1 AGAGAGATAAGATCCTGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTAAATTCT
** * * * ** *
75352861 T-AATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTG-GATCTGCTCCGCTGTAA-T
65 TCAATCTACTCCACTGTAACCTCAGGGAGATAAGACA-TG-AATGCGATCTACTCCGCTGTAACT
75352923 CTC
128 -TC
*
75352926 AGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATT
1 AGAGAGATAAGATC-CT-GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-AAATT
** * * *
75352991 CTTCGGTCTACTCCACTATAACCTCAGGGAGATAAGACCTG-ATGCGATCTACTCTGCTGTAACT
63 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGACATGAATGCGATCTACTCCGCTGTAACT
75353055 TC
128 TC
** * * * * * * *
75353057 AGAGAGATAAGATCCTTTATTTTAATATTCTCCACTGTAATCTCAGGGAGATAGGAT-T-ACTAG
1 AGAGAGATAAGATCC--TGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAAT-T
* * *
75353120 CTTCAATCTGCTCCGCTGTAAACTCAGGGAGATAAGA
63 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGA
75353157 TCTGAAATTC
Statistics
Matches: 1841, Mismatches: 531, Indels: 371
0.67 0.19 0.14
Matches are distributed among these distances:
119 1 0.00
120 120 0.07
121 4 0.00
122 35 0.02
123 62 0.03
124 7 0.00
125 96 0.05
126 7 0.00
127 11 0.01
128 104 0.06
129 248 0.13
130 42 0.02
131 773 0.42
132 63 0.03
133 99 0.05
134 169 0.09
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (129 bp):
AGAGAGATAAGATCCTGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAATTCTT
CAATCTACTCCACTGTAACCTCAGGGAGATAAGACATGAATGCGATCTACTCCGCTGTAACTTC
Found at i:75351286 original size:175 final size:175
Alignment explanation
Indices: 75351058--75351701 Score: 854
Period size: 175 Copynumber: 3.7 Consensus size: 175
75351048 CTTGGATCTA
* * * * * * *
75351058 CTCCGCTGTAATCTCAAGAAGATAAGATCT-CTAGCTTCAACCTACTTCACTGTAACCTCAGGGA
1 CTCCACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGA
75351122 GATAAGATTTGAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
65 GATAAGATTTGAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
*
75351187 TACTCTGCTATAACTTCAGAGAGATAAGATCATTTATTTTAATCCG
130 TACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
* *
75351233 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACATCAAGGAG
1 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
* * * * * * * *
75351298 ATAAGATTTGAAATTTTTCGGTCTATTACACTGTAATCTCAGAGATATAATACCTGATGCGATCT
66 ATAAGATTTGAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCT
*
75351363 ACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATTCG
131 ACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
*
75351408 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAT
1 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
* * * *
75351473 ATAAGATCTGAAATTTTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATCT
66 ATAAGATTTGAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCT
* * *
75351538 ACTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCCG
131 ACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
* ** ** *
75351583 CTCCACTGTAA-CTTCAGGGAGATAGGA-TAGT-GTCTTGGATCTGCTCCGTTGTAATCTCAGGG
1 CTCCACTGTAATC-TCAGGGAGATAGGATTACTAG-CTTCAATCTGCTCCACTGTAACCTCAGGG
* * * *
75351645 AGATAAGATCTCTG----GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGA
64 AGATAAGAT-T-TGAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGA
75351702 AATTCTTCGG
Statistics
Matches: 415, Mismatches: 49, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
172 36 0.09
173 1 0.00
174 37 0.09
175 339 0.82
176 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (175 bp):
CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
ATAAGATTTGAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCT
ACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
Found at i:75351656 original size:778 final size:778
Alignment explanation
Indices: 75349745--75351811 Score: 3108
Period size: 778 Copynumber: 2.7 Consensus size: 778
75349735 CTCCACCTTG
*
75349745 GGAGATAAGATCTGAAATTCCTCGGTCTATTCCACTGTAATCTCAGAGAGATAAGACCTGATGCG
1 GGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGAGAGATAAGACCTGATGCG
*
75349810 ATCTACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCAACTGTAA-CTTC
66 ATCTACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATC-TC
* ** * * * *
75349874 A--G-GATA-G--T-GT-CTTGGATCTACTCCACTGTAATCTCAGGGAGATAAGATCT---CTGG
130 AGGGAGATAGGATTACTACTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT-T
* *** * * * * * * *
75349928 CTTCAACCTGCTCCACTGTAACCCCAGGGAGATAAGATCTAAAATTCTTCGATCTACTCCACTGT
194 TTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCT--GA---TGCGATCTACTCTACTGT
* * * *** ** * * * *
75349993 AACCTCAGGGAGAT-A-ATACC-TGA-TGCGATCTACTCAACTGTAACTTCAGAGAGATAAGATC
254 AACTTCAGAGAGATGAGAT-CCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATA
* * * ** * * * *
75350054 CTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCAATCTGCTCCA
318 GTGT-CTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT-CTGGCTTCAATCTGCTCCA
*
75350118 CTGTAACCTCAGGGAAATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATA
381 CTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATA
* * *
75350183 AGACTTGATGTGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCTTTTATTTTAATCCGCTCC
446 AGACATGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCC
* * *
75350248 ACTGTAACTTCAGGATAGTGTCTTGGATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTCTGG
511 ACTGTAACTTCAGGATAGTGTCTTGGATCTACTCCGCTGTAATCTCAAGAAGATAAGATCTCTAG
*
75350313 CTTCAACCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAAATTCTTCGATCTACTCCACTGT
576 CTTCAACCTACTCCACTGTAACCTCAGGGAGATAAGATCTAAAATTCTTCGATCTACTCCACTGT
* *
75350378 AACCTCAGGGAGATAAGACCTGATGCGATCAACTCTGCTATAACTTCAGGGAAATAAGATCTTTT
641 AACCTCAGGGAGATAAGACCTGATGCGATCAACTCTGCTATAACTTCAGAGAAATAAGATCATTT
*
75350443 ATATTAATCCGCTCCACTGTAATATTAGAGAGATAGGATTACTAGCTTCAAATCTGCTCCACTGT
706 ATATTAATCCGCTCCACTGTAATATCAGAGAGATAGGATTACTAGCTTCAAATCTGCTCCACTGT
* *
75350508 AACCTCAG
771 AACATCAA
* ** *
75350516 GGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCG
1 GGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGAGAGATAAGACCTGATGCG
* * * *
75350581 GTCTACTCTTCTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCA
66 ATCTACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCA
* *
75350646 GGGAGATAGGATTACTAACTTCAATTTGCTCCACTGTGACCTCAGGGAGATAAGATCTGAAATTT
131 GGGAGATAGGATTACT-ACTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTT
75350711 TTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTC
195 TTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTC
*
75350776 AGAGAGAGGAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTT
260 AGAGAGATGAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTT
* *
75350841 GGATCTGCTCCGCTGTAATCTCAGGGAGATCAGATCTCTGGCTTCAATCTGCTCCACAGTAACCT
325 GGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCT
* *
75350906 TAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTTAGGGAGATAAGACATGAT
390 CAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACATGAT
* *
75350971 GCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGATCCACTGTAACT
455 GCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAACT
75351036 TCAGGATAGTGTCTTGGATCTACTCCGCTGTAATCTCAAGAAGATAAGATCTCTAGCTTCAACCT
520 TCAGGATAGTGTCTTGGATCTACTCCGCTGTAATCTCAAGAAGATAAGATCTCTAGCTTCAACCT
* * *
75351101 ACTTCACTGTAACCTCAGGGAGATAAGATTTGAAATTCTTCGATCTACTCCACTGTAACCTCAGG
585 ACTCCACTGTAACCTCAGGGAGATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGG
* * *
75351166 GAGATAAGACCTGATGCGATCTACTCTGCTATAACTTCAGAGAGATAAGATCATTTATTTTAATC
650 GAGATAAGACCTGATGCGATCAACTCTGCTATAACTTCAGAGAAATAAGATCATTTATATTAATC
* *
75351231 CGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC-AATCTGCTCCACTGTAACATCAA
715 CGCTCCACTGTAATATCAGAGAGATAGGATTACTAGCTTCAAATCTGCTCCACTGTAACATCAA
* * * * *
75351294 GGAGATAAGATTTGAAATTTTTCGGTCTATTACACTGTAATCTCAGAGATATAATACCTGATGCG
1 GGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGAGAGATAAGACCTGATGCG
*
75351359 ATCTACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATTCGCTCCACTGTAATCTCA
66 ATCTACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCA
*
75351424 GGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGATATAAGATCTGAAATTT
131 GGGAGATAGGATTACTA-CTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTT
75351489 TTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTC
195 TTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTC
75351554 AGAGAGATGAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTT
260 AGAGAGATGAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTT
*
75351619 GGATCTGCTCCGTTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCT
325 GGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCT
*
75351684 CAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGATATGAT
390 CAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACATGAT
75351749 GCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAA
455 GCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAA
75351812 TCTCAGGGAG
Statistics
Matches: 1173, Mismatches: 104, Indels: 31
0.90 0.08 0.02
Matches are distributed among these distances:
771 118 0.10
772 1 0.00
773 1 0.00
774 4 0.00
775 1 0.00
777 29 0.02
778 515 0.44
779 404 0.34
780 67 0.06
782 32 0.03
783 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (778 bp):
GGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGAGAGATAAGACCTGATGCG
ATCTACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCA
GGGAGATAGGATTACTACTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTTT
TCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCA
GAGAGATGAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTG
GATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTC
AGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACATGATG
CGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAACTT
CAGGATAGTGTCTTGGATCTACTCCGCTGTAATCTCAAGAAGATAAGATCTCTAGCTTCAACCTA
CTCCACTGTAACCTCAGGGAGATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGG
AGATAAGACCTGATGCGATCAACTCTGCTATAACTTCAGAGAAATAAGATCATTTATATTAATCC
GCTCCACTGTAATATCAGAGAGATAGGATTACTAGCTTCAAATCTGCTCCACTGTAACATCAA
Found at i:75352076 original size:166 final size:166
Alignment explanation
Indices: 75351665--75352372 Score: 963
Period size: 166 Copynumber: 4.2 Consensus size: 166
75351655 TCTGGCTTCA
* *
75351665 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCT
1 ATCTGCTCCACTGTAACATCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTACACTGTAACCT
* * *
75351730 CAGGGAGATAAGATATGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTT
66 CAGAGAGATAAGACATGATGCGATCTACTCTGCTATAACTTCAGAGAGATAAGATCATTTATTTT
* **
75351795 AATCCGCTCCACTGTAA-TCTCAGGGAGATAGGATTACTAGCTTCA
131 AATCCGCTCCACTGTAACT-TCA--G-GATA-G--T-GT--CTTGG
* * * * *
75351840 ATCTGCTCCACTGTAACATCAAGGAGATAAGATTTGAAATTTTTCGGTCTATTACACTGTAATCT
1 ATCTGCTCCACTGTAACATCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTACACTGTAACCT
* * * *
75351905 CAGAGATATAATACCTGATGCGATCTACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTT
66 CAGAGAGATAAGACATGATGCGATCTACTCTGCTATAACTTCAGAGAGATAAGATCATTTATTTT
*
75351970 AATTCGCTCCACTGTAACTTCAGGATAGTGTCTTGG
131 AATCCGCTCCACTGTAACTTCAGGATAGTGTCTTGG
* * * * *
75352006 ATCTGCTCCACTGTAACATCAAGGAGATAAGATTTGAAATTTTTCGGTCTATTACACTGTAATCT
1 ATCTGCTCCACTGTAACATCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTACACTGTAACCT
* * ** *
75352071 CAGAGATATAATACCGGATGCGATCTACTCTGCTATAACTTCAGAGAGATTAGATTC-TTTATTT
66 CAGAGAGATAAGACATGATGCGATCTACTCTGCTATAACTTCAGAGAGATAAGA-TCATTTATTT
75352135 TAATCCGCTCCACTGTAACTTCAGGATAGTGTCTTGG
130 TAATCCGCTCCACTGTAACTTCAGGATAGTGTCTTGG
* *
75352172 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCT
1 ATCTGCTCCACTGTAACATCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTACACTGTAACCT
* * *
75352237 CAGGGAGATAAGATATGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTT
66 CAGAGAGATAAGACATGATGCGATCTACTCTGCTATAACTTCAGAGAGATAAGATCATTTATTTT
*
75352302 AATTCGCTCCACTGTAACTTCAGGATAGTGTCTTGG
131 AATCCGCTCCACTGTAACTTCAGGATAGTGTCTTGG
* *
75352338 ATCTACTCCACTGTAATC-TTAGGGAGATAAGATCT
1 ATCTGCTCCACTGTAA-CATCAGGGAGATAAGATCT
75352373 CTGGCTTCAA
Statistics
Matches: 490, Mismatches: 39, Indels: 17
0.90 0.07 0.03
Matches are distributed among these distances:
165 2 0.00
166 341 0.70
167 3 0.01
168 1 0.00
169 1 0.00
171 1 0.00
172 4 0.01
173 1 0.00
175 135 0.28
176 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Consensus pattern (166 bp):
ATCTGCTCCACTGTAACATCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTACACTGTAACCT
CAGAGAGATAAGACATGATGCGATCTACTCTGCTATAACTTCAGAGAGATAAGATCATTTATTTT
AATCCGCTCCACTGTAACTTCAGGATAGTGTCTTGG
Found at i:75352158 original size:778 final size:769
Alignment explanation
Indices: 75350068--75352039 Score: 2327
Period size: 778 Copynumber: 2.5 Consensus size: 769
75350058 ATTTTAATCC
* * * *
75350068 GCTCCACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCAATCTGCTCCACTGTAACCTCAGGG
1 GCTCCGCTGTAATCTCAGGGAGATAAGATCT-CTGGCTTCAATCTGCTCCACAGTAACCTCAGGG
* * *
75350132 AAATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGATGTGAT
65 AGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACATGATGCGAT
* *
75350197 CTACTCTGCTGTAACTTCAGAGAGATAAGATCTTTTATTTTAATCCGCTCCACTGTAACTTCAGG
130 CTACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGATCCACTGTAACTTCAGG
* ** * * * *** * *
75350262 ATAGTGTCTTGGATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAACCTGCTCC
195 ATAGTCTCTTCAATCTACTCCACTGTAATCTCAAGAAGATAAGATCTAAAGCTTCAACCTACTTC
* * * * * *
75350327 ACTGTAACCTCAGGGAGATAAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGAT
260 ACTGTAACCTCAGAGAGATAAGACCT-GAA-T-TGCGATCTACTCCACTATAACCTCAGAGAGAT
* * ** * * * *
75350392 AAGACCTGATGCGATCAACTCTGCTATAACTTCAGGGAAATAAGATCTTTTA-TATTAATCCGCT
322 AAGACCTGATGCAATCTACTCCACTATAACTTCA-AGAGATAAGA---TGTACT-TGAATCCGCT
* * * * * * * *
75350456 CCACTGTAATAT-TAGAGAGATAGGATTACTAGCTTCAAATCTGCTCCACTGTAACCTCAGGGAG
382 CCACTGTAATCTCAAG-GAGATAAGATTAATAGCTTC-AATCTACTACACTGTAACATCAAGGAG
* * * * * ** * * ** *
75350520 ATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGGTCT
445 ATAAGATCCGAAA-T-TGCGATCTACTACACTATAATCTCAGAGAGATAATACCTGATGCAATCC
** *
75350585 ACTCTTCTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGA
508 ACTCCACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGA
* *
75350650 GATAGGATTACTAACTTCAATTTGCTCCACTGTGACCTCAGGGAGATAAGATCTGAAATTTTTCG
573 GATAGGATTACTAACTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTTTTCG
75350715 GTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
638 GTCTACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
75350780 AGAGGAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGAT
703 AGAGGAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGAT
75350845 CT
768 CT
* *
75350847 GCTCCGCTGTAATCTCAGGGAGATCAGATCTCTGGCTTCAATCTGCTCCACAGTAACCTTAGGGA
1 GCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACAGTAACCTCAGGGA
*
75350912 GATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTTAGGGAGATAAGACATGATGCGATC
66 GATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACATGATGCGATC
*
75350977 TACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGATCCACTGTAACTTCAGGA
131 TACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGATCCACTGTAACTTCAGGA
* ** * **
75351042 TAGTGTCTTGGATCTACTCCGCTGTAATCTCAAGAAGATAAGATCTCTAGCTTCAACCTACTTCA
196 TAGTCTCTTCAATCTACTCCACTGTAATCTCAAGAAGATAAGATCTAAAGCTTCAACCTACTTCA
* ** * * *
75351107 CTGTAACCTCAGGGAGATAAGATTTGAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATA
261 CTGTAACCTCAGAGAGATAAGACCTG-AA-T-TGCGATCTACTCCACTATAACCTCAGAGAGATA
* ** * * *
75351172 AGACCTGATGCGATCTACTCTGCTATAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCC
323 AGACCTGATGCAATCTACTCCACTATAACTTCA-AGAGATAAG---ATGTACTTGAATCCGCTCC
* * * * *
75351237 ACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACATCAAGGAGATAA
384 ACTGTAATCTCAAGGAGATAAGATTAATAGCTTCAATCTACTACACTGTAACATCAAGGAGATAA
** * * * * * * *
75351302 GATTTGAAATTTTTCGGTCTATTACACTGTAATCTCAGAGATATAATACCTGATGCGATCTACTC
449 GATCCGAAA--TTGCGATCTACTACACTATAATCTCAGAGAGATAATACCTGATGCAATCCACTC
** * *
75351367 TGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATTCGCTCCACTGTAATCTCAGGGAGATA
512 CACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATA
* *
75351432 GGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGATATAAGATCTGAAATTTTTCGGTCT
577 GGATTACTAACTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTTTTCGGTCT
*
75351497 ACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGAT
642 ACTCCACTGTAGCCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGAG
75351562 GAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCT
707 GAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCT
* *
75351625 GCTCCGTTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGA
1 GCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACAGTAACCTCAGGGA
*
75351690 GATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGATATGATGCGATC
66 GATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACATGATGCGATC
*
75351755 TACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAA-TCTCAGG
131 TACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGATCCACTGTAACT-TCA--
* * * **
75351819 GAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAA-CATCAAGGAGATAAGATTTGAAATTTT
193 G-GATA-G--T-CT--CTTCAATCTACTCCACTGTAATC-TCAAGAAGATAAGATCT-AAA-GCT
*** * * * ** *
75351883 TCGGTCTA-TTACACTGTAATCTCAGAGATATAATACCTG-A-TGCGATCTACTCTGCTATAACT
248 TCAACCTACTT-CACTGTAACCTCAGAGAGATAAGACCTGAATTGCGATCTACTCCACTATAACC
* ** * *
75351945 TCAGAGAGATAAGATCCTTTATTTTAAT-TCGCTCCACTGTAACTTC-AG-GAT-AG-TGT-CTT
312 TCAGAGAGATAAGA-CC-TGA-TGCAATCT-ACTCCACTATAACTTCAAGAGATAAGATGTACTT
* *
75352004 GGATCTGCTCCACTGTAA-CATCAAGGAGATAAGATT
373 GAATCCGCTCCACTGTAATC-TCAAGGAGATAAGATT
75352040 TGAAATTTTT
Statistics
Matches: 1072, Mismatches: 94, Indels: 55
0.88 0.08 0.05
Matches are distributed among these distances:
777 2 0.00
778 544 0.51
779 392 0.37
780 4 0.00
781 4 0.00
782 2 0.00
783 2 0.00
784 34 0.03
785 5 0.00
786 4 0.00
787 48 0.04
788 3 0.00
789 28 0.03
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (769 bp):
GCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACAGTAACCTCAGGGA
GATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACATGATGCGATC
TACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGATCCACTGTAACTTCAGGA
TAGTCTCTTCAATCTACTCCACTGTAATCTCAAGAAGATAAGATCTAAAGCTTCAACCTACTTCA
CTGTAACCTCAGAGAGATAAGACCTGAATTGCGATCTACTCCACTATAACCTCAGAGAGATAAGA
CCTGATGCAATCTACTCCACTATAACTTCAAGAGATAAGATGTACTTGAATCCGCTCCACTGTAA
TCTCAAGGAGATAAGATTAATAGCTTCAATCTACTACACTGTAACATCAAGGAGATAAGATCCGA
AATTGCGATCTACTACACTATAATCTCAGAGAGATAATACCTGATGCAATCCACTCCACTGTAAC
TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTA
ACTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTACTCCACTG
TAGCCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGAGGAGATCCTT
TATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCT
Found at i:75352365 original size:79 final size:77
Alignment explanation
Indices: 75351926--75352372 Score: 274
Period size: 79 Copynumber: 5.5 Consensus size: 77
75351916 TACCTGATGC
** * *
75351926 GATCTACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATTCGCTCCACTGTAACTTC
1 GATCTACTCCACTGTAACTT-AGGGAGATAAGAT-CTTTATTTTAATTCGCTCCACTGTAACTTC
75351991 AGGATAGTGTCTTG
64 AGGATAGTGTCTTG
* * * * * *
75352005 GATCTGCTCCACTGTAACATCAAGGAGATAAGAT-TTGAAATTT--TTCGGTCTATTACACTGTA
1 GATCTACTCCACTGTAAC-TTAGGGAGATAAGATCTT-TATTTTAATTC-G-C---TCCACTGTA
* *
75352067 A-TCTCAGAGATA-TAATACCGGATG
59 ACT-TCAG-GATAGT-GT--C--TTG
** * * * *
75352091 CGATCTACTCTGCTATAACTTCAGAGAGATTAGATTCTTTATTTTAATCCGCTCCACTGTAACTT
1 -GATCTACTCCACTGTAACTT-AGGGAGATAAGA-TCTTTATTTTAATTCGCTCCACTGTAACTT
75352156 CAGGATAGTGTCTTG
63 CAGGATAGTGTCTTG
* * ** *** * *
75352171 GATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACC
1 GATCTACTCCACTGTAA-CTTAGGGAGATAAGATCT-TTATT-TTAATTC-GCTCCACTGTAACT
* **
75352236 TCAGGGAGATAAGATATGATG
62 TCA--G-GAT-AG-TGTCTTG
** *
75352257 CGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTTAATTCGCTCCACTGTAACTT
1 -GATCTACTCCACTGTAACTT-AGGGAGATAAGATC-TTTATTTTAATTCGCTCCACTGTAACTT
75352322 CAGGATAGTGTCTTG
63 CAGGATAGTGTCTTG
75352337 GATCTACTCCACTGTAATCTTAGGGAGATAAGATCT
1 GATCTACTCCACTGTAA-CTTAGGGAGATAAGATCT
75352373 CTGGCTTCAA
Statistics
Matches: 271, Mismatches: 62, Indels: 71
0.67 0.15 0.18
Matches are distributed among these distances:
76 3 0.01
77 3 0.01
78 9 0.03
79 79 0.29
80 16 0.06
81 31 0.11
82 9 0.03
83 2 0.01
84 9 0.03
85 31 0.11
86 14 0.05
87 53 0.20
88 7 0.03
89 3 0.01
90 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.33
Consensus pattern (77 bp):
GATCTACTCCACTGTAACTTAGGGAGATAAGATCTTTATTTTAATTCGCTCCACTGTAACTTCAG
GATAGTGTCTTG
Found at i:75352390 original size:79 final size:75
Alignment explanation
Indices: 75352141--75352404 Score: 186
Period size: 79 Copynumber: 3.3 Consensus size: 75
75352131 ATTTTAATCC
* * *
75352141 GCTCCACTGTAACTTCAGGATAGTGTCTTGGATCTGCTCCACTGTAACCTCAGGGAGATAAGATC
1 GCTCCACTGTAACCTCAGGATAGTGTCTTGGATCTACTCCACTGTAA-CTTAGGGAGATAAGATC
* **
75352206 TGAAATTCTTCGGTCT
65 T----TACTTC-AACT
* * ** ** *
75352222 ACTCCACTGTAACCTCAGGGAGATAAGATATGATGCGATCTACTCTGCTGTAACTTCAGAGAGAT
1 GCTCCACTGTAACCTCA--G-GAT-AG-TGTCTTG-GATCTACTCCACTGTAACTT-AGGGAGAT
* * *
75352287 AAGATCATTTATTTTAATT
59 AAGATC--TTACTTCAACT
*
75352306 CGCTCCACTGTAACTTCAGGATAGTGTCTTGGATCTACTCCACTGTAATCTTAGGGAGATAAGAT
1 -GCTCCACTGTAACCTCAGGATAGTGTCTTGGATCTACTCCACTGTAA-CTTAGGGAGATAAGAT
*
75352371 CTCTGGCTTCAACCT
64 CT-T-ACTTCAA-CT
75352386 GCTCCACTGTAACCTCAGG
1 GCTCCACTGTAACCTCAGG
75352405 GAGATAAGAT
Statistics
Matches: 140, Mismatches: 29, Indels: 30
0.70 0.15 0.15
Matches are distributed among these distances:
77 1 0.01
78 1 0.01
79 50 0.36
80 8 0.06
81 17 0.12
82 3 0.02
83 2 0.01
84 4 0.03
85 20 0.14
86 6 0.04
87 27 0.19
89 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (75 bp):
GCTCCACTGTAACCTCAGGATAGTGTCTTGGATCTACTCCACTGTAACTTAGGGAGATAAGATCT
TACTTCAACT
Found at i:75352557 original size:175 final size:175
Alignment explanation
Indices: 75352343--75352986 Score: 890
Period size: 175 Copynumber: 3.7 Consensus size: 175
75352333 CTTGGATCTA
* * *
75352343 CTCCACTGTAATCTTAGGGAGATAAGATCT-CTGGCTTCAACCTGCTCCACTGTAACCTCAGGGA
1 CTCCACTGTAATCTTAGGGAGATAGGAT-TACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGA
*
75352407 GATAAGATCTGAAATTCTTCGACCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
65 GATAAGATCTGAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
* *
75352472 TAATCTGCTATAACTTCAAAGAGATAAGATCCTTTATTTTAATCCG
130 TACTCTACTATAACTTCAAAGAGATAAGATCCTTTATTTTAATCCG
75352518 CTCCACTGTAATCTTAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
1 CTCCACTGTAATCTTAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
* * *
75352583 ATAAGATCTAAAATTCTTTGATCTACTCCACTATAACCTCAGGGAGATAAGACCTGATGCGATCT
66 ATAAGATCTGAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCT
* * *
75352648 ACTCTACTATAACTTCAGAA-AAATAAGATCTTTTATATTAATCCG
131 ACTCTACTATAACTTCA-AAGAGATAAGATCCTTTATTTTAATCCG
**
75352693 CTCCACTGTAATCTTATAGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
1 CTCCACTGTAATCTTAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
* * * * * *
75352758 ATAAAATCTGAAATTTTTCGGTCTACTCCACTGTAGCCTCAGGGAAATAAGACCTGATGCGGTCT
66 ATAAGATCTGAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCT
* * *
75352823 ACTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCCG
131 ACTCTACTATAACTTCAAAGAGATAAGATCCTTTATTTTAATCCG
* ** * *
75352868 CTCCACTGTAA-CTTCAGGGAGATAGGA-TAGT-GTCTTGGATCTGCTCCGCTGTAATCTCAGGG
1 CTCCACTGTAATCTT-AGGGAGATAGGATTACTAG-CTTCAATCTGCTCCACTGTAACCTCAGGG
* * * * *
75352930 AGATAAGATCT---CTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGA
64 AGATAAGATCTGAAAT-TCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGA
75352987 AATTCTTCGG
Statistics
Matches: 417, Mismatches: 46, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
171 1 0.00
172 35 0.08
173 1 0.00
174 43 0.10
175 335 0.80
176 2 0.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (175 bp):
CTCCACTGTAATCTTAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
ATAAGATCTGAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCT
ACTCTACTATAACTTCAAAGAGATAAGATCCTTTATTTTAATCCG
Found at i:75353003 original size:393 final size:393
Alignment explanation
Indices: 75352172--75353175 Score: 1185
Period size: 393 Copynumber: 2.6 Consensus size: 393
75352162 AGTGTCTTGG
*
75352172 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCT
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTATAACCT
**
75352237 CAGGGAGATAAGATATGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTT
66 CAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTT
* * ** * * *
75352302 AATTCGCTCCACTGTAA-CTT-CAG-GATA-G--T-GT--CTTGGATCTACTCCACTGTAATCTT
131 AATACGCTCCACTGTAATCTTACAGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAAACTC
* * *** * * *
75352358 AGGGAGATAAGATCT---CTGGCTTCAACCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAA
196 AGGGAGATAAGATCTGAAAT-TCTTCGGTCTACTCCACTGTAACCTCAGGGAAATAAGACCTG-A
* * * * **
75352420 ATTCTTCGACCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTAATCTGCTATAA
259 A-T-TGCGACCTACTCCACTGTAACCTCAGAGAGATAAGACCTGATGCAATCCAATCCACTATAA
* * * * * *
75352485 CTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTTAGGGAGATAGGATTACT
322 CTTCAAAGAGATAAGATACTGTACTTGAATCCGCTCCACTGTAATCTCAGGGAGATAAGATTACT
75352550 AGCTTCA
387 AGCTTCA
* * *
75352557 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAAATTCTTTGATCTACTCCACTATAACCT
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTATAACCT
* * * * * *
75352622 CAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAAAAATAAGATCTTTTATATT
66 CAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTT
* * *
75352687 AATCCGCTCCACTGTAATCTTATAGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAACCTC
131 AATACGCTCCACTGTAATCTTACAGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAAACTC
* * *
75352752 AGGGAGATAAAATCTGAAATTTTTCGGTCTACTCCACTGTAGCCTCAGGGAAATAAGACCTG-A-
196 AGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAAATAAGACCTGAAT
** * * * * ** ** *
75352815 TGCGGTCTACTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCCGCTCCACTGTAAC
261 TGCGACCTACTCCACTGTAACCTCAGAGAGATAAGA-CC-TGA-TGCAATCCAATCCACTATAAC
** * * * * *
75352880 TTCAGGGAGATAGGATAGTGT-CTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT-CT
323 TTCAAAGAGATAAGATACTGTACTTGAATCCGCTCCACTGTAATCTCAGGGAGATAAGAT-TACT
*
75352943 GGCTTCA
387 AGCTTCA
75352950 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTATAACCT
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTATAACCT
*
75353015 CAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTT
66 CAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTT
** * ** *
75353080 AATATTCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAAACTC
131 AATACGCTCCACTGTAATCTTACAGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAAACTC
75353145 AGGGAGATAAGATCTGAAATTCTTCGGTCTA
196 AGGGAGATAAGATCTGAAATTCTTCGGTCTA
75353176 TTCCCTGGGG
Statistics
Matches: 522, Mismatches: 81, Indels: 24
0.83 0.13 0.04
Matches are distributed among these distances:
385 134 0.26
386 3 0.01
387 2 0.00
388 4 0.01
389 1 0.00
391 30 0.06
392 3 0.01
393 248 0.48
394 63 0.12
396 33 0.06
397 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (393 bp):
ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTATAACCT
CAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTT
AATACGCTCCACTGTAATCTTACAGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAAACTC
AGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAAATAAGACCTGAAT
TGCGACCTACTCCACTGTAACCTCAGAGAGATAAGACCTGATGCAATCCAATCCACTATAACTTC
AAAGAGATAAGATACTGTACTTGAATCCGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCT
TCA
Found at i:75353948 original size:222 final size:222
Alignment explanation
Indices: 75353562--75354007 Score: 838
Period size: 222 Copynumber: 2.0 Consensus size: 222
75353552 ACATGATGTG
*
75353562 AAATTCTTTGGTCCTTTATACCATTCTAATGATGTCATACCAAATGCTCATAAAAAATTTCTTCT
1 AAATTCTTTGGTCCTTTATACCATTCTAATGATGTCATACCAAATGCTCATAAAAAATTTCTTCC
*
75353627 CCGATGAAACCTCTTCCTATTGCCTGGTGATCATTGCTTGTTTGTTTATTTAAGCTTTGTCATTA
66 CCGAGGAAACCTCTTCCTATTGCCTGGTGATCATTGCTTGTTTGTTTATTTAAGCTTTGTCATTA
75353692 ACACGACATCTTGTCATTTTTTTCAACCAATGCATTTGACAAAAAAATCCAAAGAGAAAGTCCAA
131 ACACGACATCTTGTCATTTTTTTCAACCAATGCATTTGACAAAAAAATCCAAAGAGAAAGTCCAA
75353757 ACTTAGACTCTTCCTTCTCAAATTTCT
196 ACTTAGACTCTTCCTTCTCAAATTTCT
*
75353784 AAATTCTTTGGTCCTTTATACCATTCTAATGATGTCATACCAAATGCTCATAAAACATTTCTTCC
1 AAATTCTTTGGTCCTTTATACCATTCTAATGATGTCATACCAAATGCTCATAAAAAATTTCTTCC
* *
75353849 CCGAGGCAACCTCTTCCTATTGCCTGGTGATCATTGCTTGTTTGTTTATTTAAGCTTTGTTATTA
66 CCGAGGAAACCTCTTCCTATTGCCTGGTGATCATTGCTTGTTTGTTTATTTAAGCTTTGTCATTA
*
75353914 ACACGACATCTTGTCATTTTTTTCAACCAATGCATTTGACAACAAAATCCAAAGAGAAAGTCCAA
131 ACACGACATCTTGTCATTTTTTTCAACCAATGCATTTGACAAAAAAATCCAAAGAGAAAGTCCAA
75353979 ACTTAGACTCTTCCTTCTCAAATTTCT
196 ACTTAGACTCTTCCTTCTCAAATTTCT
75354006 AA
1 AA
75354008 CCTTTAAATT
Statistics
Matches: 218, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
222 218 1.00
ACGTcount: A:0.29, C:0.22, G:0.11, T:0.37
Consensus pattern (222 bp):
AAATTCTTTGGTCCTTTATACCATTCTAATGATGTCATACCAAATGCTCATAAAAAATTTCTTCC
CCGAGGAAACCTCTTCCTATTGCCTGGTGATCATTGCTTGTTTGTTTATTTAAGCTTTGTCATTA
ACACGACATCTTGTCATTTTTTTCAACCAATGCATTTGACAAAAAAATCCAAAGAGAAAGTCCAA
ACTTAGACTCTTCCTTCTCAAATTTCT
Found at i:75355619 original size:12 final size:12
Alignment explanation
Indices: 75355550--75355626 Score: 50
Period size: 12 Copynumber: 6.4 Consensus size: 12
75355540 TCTTTTTCTC
* *
75355550 ATTTTCATTTTC
1 ATTTTGATTTTT
* *
75355562 ATTTTGATCTTG
1 ATTTTGATTTTT
75355574 ATTTTGATTTTT
1 ATTTTGATTTTT
* **
75355586 -TCTTCTTTTTT
1 ATTTTGATTTTT
*
75355597 CTTTTTG-TTTTT
1 -ATTTTGATTTTT
75355609 ATTTTGATTTTT
1 ATTTTGATTTTT
75355621 GATTTT
1 -ATTTT
75355627 TTTTCTTTTT
Statistics
Matches: 50, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
11 13 0.26
12 29 0.58
13 8 0.16
ACGTcount: A:0.12, C:0.08, G:0.08, T:0.73
Consensus pattern (12 bp):
ATTTTGATTTTT
Found at i:75355637 original size:18 final size:18
Alignment explanation
Indices: 75355575--75355641 Score: 53
Period size: 21 Copynumber: 3.4 Consensus size: 18
75355565 TTGATCTTGA
75355575 TTTTGATTTTTTCTTCTTT
1 TTTTGATTTTTT-TTCTTT
** *
75355594 TTTCTTTTTGTTTTTATTTTGAT
1 TTT-TGATT-TTTTT-TCTT--T
75355617 TTTTGATTTTTTTTCTTT
1 TTTTGATTTTTTTTCTTT
75355635 TTTTGAT
1 TTTTGAT
75355642 CTGAGCCTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 11
0.69 0.11 0.20
Matches are distributed among these distances:
18 8 0.22
19 3 0.08
20 7 0.19
21 12 0.32
22 3 0.08
23 4 0.11
ACGTcount: A:0.07, C:0.06, G:0.07, T:0.79
Consensus pattern (18 bp):
TTTTGATTTTTTTTCTTT
Found at i:75375443 original size:32 final size:29
Alignment explanation
Indices: 75375393--75375453 Score: 95
Period size: 32 Copynumber: 2.0 Consensus size: 29
75375383 CCCACTTAAA
75375393 ATTTAAAAATATTTGGACAAAAATATTAG
1 ATTTAAAAATATTTGGACAAAAATATTAG
75375422 ATTTGAAAAATAGGTTTGGACAAAAATATTAG
1 ATTT-AAAAATA--TTTGGACAAAAATATTAG
75375454 GTTCGTTCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
29 4 0.14
30 7 0.24
32 18 0.62
ACGTcount: A:0.49, C:0.03, G:0.15, T:0.33
Consensus pattern (29 bp):
ATTTAAAAATATTTGGACAAAAATATTAG
Found at i:75375456 original size:19 final size:19
Alignment explanation
Indices: 75375404--75375456 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 19
75375394 TTTAAAAATA
*
75375404 TTTGGACAAAAATATTAGA
1 TTTGGACAAAAATATTAGG
75375423 TTT-G---AAAA-A-TAGG
1 TTTGGACAAAAATATTAGG
75375436 TTTGGACAAAAATATTAGG
1 TTTGGACAAAAATATTAGG
75375455 TT
1 TT
75375457 CGTTCAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 12
0.68 0.03 0.30
Matches are distributed among these distances:
13 6 0.22
14 2 0.07
15 4 0.15
17 4 0.15
18 2 0.07
19 9 0.33
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (19 bp):
TTTGGACAAAAATATTAGG
Found at i:75375699 original size:22 final size:22
Alignment explanation
Indices: 75375674--75375718 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
75375664 TTGCAACAAA
*
75375674 TAAAA-AATAAAATTATTAATAT
1 TAAAATAATAAAA-TATAAATAT
*
75375696 TAAAATAATATAATATAAATAT
1 TAAAATAATAAAATATAAATAT
75375718 T
1 T
75375719 TTTAATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (22 bp):
TAAAATAATAAAATATAAATAT
Found at i:75391242 original size:23 final size:21
Alignment explanation
Indices: 75391200--75391242 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
75391190 AAAAATTACA
* *
75391200 AAAAAAATATTAAAATTTGGT
1 AAAAAAATATAAAAAGTTGGT
75391221 AAAAAAATAATAAAAAGGTTGG
1 AAAAAAAT-ATAAAAA-GTTGG
75391243 ATTATTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 8 0.44
22 6 0.33
23 4 0.22
ACGTcount: A:0.60, C:0.00, G:0.14, T:0.26
Consensus pattern (21 bp):
AAAAAAATATAAAAAGTTGGT
Found at i:75397753 original size:16 final size:16
Alignment explanation
Indices: 75397734--75397764 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75397724 TCTAGATATT
75397734 AAAAAGAAAGTTCTGA
1 AAAAAGAAAGTTCTGA
*
75397750 AAAAAGAGAGTTCTG
1 AAAAAGAAAGTTCTG
75397765 GAACCTATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.06, G:0.23, T:0.19
Consensus pattern (16 bp):
AAAAAGAAAGTTCTGA
Found at i:75405081 original size:6 final size:7
Alignment explanation
Indices: 75405064--75405096 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
75405054 TGAGTCAAAA
75405064 AAAAATG
1 AAAAATG
75405071 AAAAATG
1 AAAAATG
75405078 AAAAATG
1 AAAAATG
75405085 -AAAATG
1 AAAAATG
75405091 AAAAAT
1 AAAAAT
75405097 AGAGAGGCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.73, C:0.00, G:0.12, T:0.15
Consensus pattern (7 bp):
AAAAATG
Found at i:75405088 original size:13 final size:14
Alignment explanation
Indices: 75405064--75405096 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
75405054 TGAGTCAAAA
75405064 AAAAATGAAAAATG
1 AAAAATGAAAAATG
75405078 AAAAATG-AAAATG
1 AAAAATGAAAAATG
75405091 AAAAAT
1 AAAAAT
75405097 AGAGAGGCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.73, C:0.00, G:0.12, T:0.15
Consensus pattern (14 bp):
AAAAATGAAAAATG
Found at i:75406549 original size:46 final size:44
Alignment explanation
Indices: 75406354--75407233 Score: 549
Period size: 44 Copynumber: 20.0 Consensus size: 44
75406344 CGAAGCAGAC
* * **
75406354 CGAAGAATTTCAGATCTTATCTCTCTGAGATTACAGTGGAGCGGAT
1 CGAAGAA--TCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGAT
* * * * *
75406400 -TAA-AATAAAAGATCCTATCTCCCTGAAGTTACAGTGGAG-CGAAT
1 CGAAGAAT--CAGATCTTATCTCCCTGAGGTTACAGTGGAGTAG-AT
* * * * *
75406444 -TAA-AATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGAT
1 CGAAGAAT-CA-GATCTTATCTCCCTGAGGTTACAGTGGAGTAGAT
* * * *
75406488 C---GCATCAGGTCTTATCTCCCTGATGTTACAGTGGAGTAGAC
1 CGAAGAATCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGAT
*
75406529 CGAAGAATTTTAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGAT
1 CGAAGAA--TCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGAT
* * * * * * *
75406575 CGAAGCCA-CAAACCTTATCTCCCTGAAGTTACAGTGGGGCAGGT
1 CGAAG-AATCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGAT
* * *
75406619 TGAA-TATGCA-AGTCTTATCTCCCTGAGGTTACAGTGGAGTAGAC
1 CGAAGAAT-CAGA-TCTTATCTCCCTGAGGTTACAGTGGAGTAGAT
*
75406663 CGAAGAATTTCAGATCTTATCTCCCTAAGGTTACAGTGGAGTAGAT
1 CGAAGAA--TCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGAT
* * * * **
75406709 TGAAGCCA-GAGATCTTATCTCCCTGAAGTTACAGTGGAGCGGAT
1 CGAAG-AATCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGAT
* * * *
75406753 -TAA-AATAAAAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGCT
1 CGAAGAAT--CAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGAT
* * * * * * *
75406797 TGAAGCCA-GAGATCTTATCTCCCTAAGATTACAGCGGAGCAGAT
1 CGAAG-AATCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGAT
* * * *
75406841 CGAAG-A-CACTATCTTATCTCTCTGAAGTTACAGTAGAGTAGAT
1 CGAAGAATCA-GATCTTATCTCCCTGAGGTTACAGTGGAGTAGAT
* * *
75406884 C---GCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGAC
1 CGAAGAATCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGAT
** *
75406925 CGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAACAAAT
1 CGAAGAA--TCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGAT
* * * * ** **
75406971 TGAAGCCA-GAGATCTTATCTCCCTGAGATTACAGCAGAACAGAT
1 CGAAG-AATCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGAT
* * * **
75407015 CGAAG-A-CACTATCCTATCTCCCTGAAGTTACAGTGGAGCGGAT
1 CGAAGAATCA-GATCTTATCTCCCTGAGGTTACAGTGGAGTAGAT
* * * * **
75407058 -TAA-AATAAAGGATCTTATCTCTCTGAAGTTACAGTAAAGTAGAT
1 CGAAGAAT-CA-GATCTTATCTCCCTGAGGTTACAGTGGAGTAGAT
* *
75407102 C---GCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGAT
1 CGAAGAATCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGAT
75407143 CGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGAT
1 CGAAGAA--TCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGAT
* * * * * *
75407189 TGAAGCCA-GAGATCTTATCTTCCTGAGATTACAGTGGAGCAGAT
1 CGAAG-AATCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGAT
75407233 C
1 C
75407234 ACATCAAGTC
Statistics
Matches: 658, Mismatches: 128, Indels: 98
0.74 0.14 0.11
Matches are distributed among these distances:
40 1 0.00
41 91 0.14
42 13 0.02
43 64 0.10
44 326 0.50
45 6 0.01
46 150 0.23
47 7 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (44 bp):
CGAAGAATCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGAT
Found at i:75406571 original size:87 final size:85
Alignment explanation
Indices: 75406409--75407232 Score: 582
Period size: 87 Copynumber: 9.4 Consensus size: 85
75406399 TTAAAATAAA
* * * ** * * *
75406409 AGATCCTATCTCCCTGAAGTTACAGTGGAGC-GAATTAAAATAAAGGATCTTATCTCTCTGAAGT
1 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAG-ATTGAAGCAGA-GATCTTATCTCCCTGAGGT
* *
75406473 TACAGTAGAGTAGATCGCA-TC
64 TACAGTGGAGTAGATCGAATTC
* * * ** * *
75406494 AGGTCTTATCTCCCTGATGTTACAGTGGAGTAGACCGAAGAATTTTAGATCTTATCTCCCTGAGG
1 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCA---GAGATCTTATCTCCCTGAGG
**
75406559 TTACAGTGGAGTAGATCGAAGCCAC
63 TTACAGTGGAGTAGATCGAA--TTC
* * * * *
75406584 AAACCTTATCTCCCTGAAGTTACAGTGGGGCAGGTTGAATATGCA-AG-TCTTATCTCCCTGAGG
1 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTG-A-A-GCAGAGATCTTATCTCCCTGAGG
*
75406647 TTACAGTGGAGTAGACCGAAGAATTTC
63 TTACAGTGGAGTAGATC---GAA-TTC
* * *
75406674 AGATCTTATCTCCCTAAGGTTACAGTGGAGTAGATTGAAGCCAGAGATCTTATCTCCCTGAAGTT
1 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAG-CAGAGATCTTATCTCCCTGAGGTT
** ** **
75406739 ACAGTGGAGCGGATTAAAATAAA
65 ACAGTGGAGTAGA-TCGAAT-TC
* * *
75406762 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGCTTGAAGCCAGAGATCTTATCTCCCTAAGATT
1 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAG-CAGAGATCTTATCTCCCTGAGGTT
* * **
75406827 ACAGCGGAGCAGATCGAAGAC
65 ACAGTGGAGTAGATCGAATTC
* * * * * * * *
75406848 ACTATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG-G-TCTTATCTCCCTGAGGTT
1 A-GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCAGAGATCTTATCTCCCTGAGGTT
*
75406911 ACAGTGGAGTAGACCGAAGAATTTC
65 ACAGTGGAGTAGATC---GAA-TTC
* * *
75406936 AGATCTTATCTCCCTGAGGTTACAGTGGAACAAATTGAAGCCAGAGATCTTATCTCCCTGAGATT
1 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAG-CAGAGATCTTATCTCCCTGAGGTT
** ** **
75407001 ACAGCAGAACAGATCGAAGAC
65 ACAGTGGAGTAGATCGAATTC
* * * * * ** * * *
75407022 ACTATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGT
1 A-GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCAGA-GATCTTATCTCCCTGAGGT
** *
75407087 TACAGTAAAGTAGATCGCA-TC
64 TACAGTGGAGTAGATCGAATTC
* * * * *
75407108 AGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAATTTCAGATCTTATCTCCCTGAGG
1 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCA---GAGATCTTATCTCCCTGAGG
* **
75407173 TTACAGTGGAGTAGATTGAAGCC
63 TTACAGTGGAGTAGATCGAATTC
* *
75407196 AGAGATCTTATCTTCCTGAGATTACAGTGGAGCAGAT
1 --AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGAT
75407233 CACATCAAGT
Statistics
Matches: 574, Mismatches: 131, Indels: 63
0.75 0.17 0.08
Matches are distributed among these distances:
84 28 0.05
85 63 0.11
86 12 0.02
87 197 0.34
88 115 0.20
89 6 0.01
90 146 0.25
91 4 0.01
92 1 0.00
93 2 0.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (85 bp):
AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCAGAGATCTTATCTCCCTGAGGTTA
CAGTGGAGTAGATCGAATTC
Found at i:75406652 original size:175 final size:177
Alignment explanation
Indices: 75406350--75406792 Score: 447
Period size: 175 Copynumber: 2.5 Consensus size: 177
75406340 ACAGCGAAGC
* * * * *
75406350 AGACCGAAGAATTTCAGATCTTATCTCTCTGAGATTACAGTGGAGCGGATTAAAATAAAAGATCC
1 AGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATGAAAACAAAAGATCC
*
75406415 TATCTCCCTGAAGTTACAGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTA
66 TATCTCCCTGAAGTTACAGTGGAGCGAATTAAAATAAAGGATCTTATCTCCCTGAAGTTACAGTA
* * * * *
75406480 GAGTAGATC-GCA-TCAGGTCTTATCTCCCTGATGTTACAGTGGAGT
131 GAGTAGACCAGAATTCAGATCTTATCTCCCTAAGGTTACAGTGGAGT
* * ** *
75406525 AGACCGAAGAATTTTAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGCCACAA-A-C
1 AGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGAT-GAAAACAAAAGATC
* * * * *
75406588 CTTATCTCCCTGAAGTTACAGTGGGGC-AGGTTGAATATGCAA-G-TCTTATCTCCCTGAGGTTA
65 C-TATCTCCCTGAAGTTACAGTGGAGCGA-ATT-AAAAT-AAAGGATCTTATCTCCCTGAAGTTA
*
75406650 CAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTAAGGTTACAGTGGAGT
126 CAGTAGAGTAGACC--AGAA-TTCAGATCTTATCTCCCTAAGGTTACAGTGGAGT
** * * * * * *
75406705 AGATTGAAGCCA---GAGATCTTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAAGATC
1 AGACCGAAG-AATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATGAAAACAAAAGATC
* *
75406767 TTATCTCCCTGAGGTTACAGTGGAGC
65 CTATCTCCCTGAAGTTACAGTGGAGC
75406793 AGCTTGAAGC
Statistics
Matches: 218, Mismatches: 37, Indels: 23
0.78 0.13 0.08
Matches are distributed among these distances:
174 3 0.01
175 101 0.46
176 10 0.05
177 7 0.03
178 58 0.27
179 1 0.00
180 37 0.17
181 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (177 bp):
AGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATGAAAACAAAAGATCC
TATCTCCCTGAAGTTACAGTGGAGCGAATTAAAATAAAGGATCTTATCTCCCTGAAGTTACAGTA
GAGTAGACCAGAATTCAGATCTTATCTCCCTAAGGTTACAGTGGAGT
Found at i:75406678 original size:134 final size:133
Alignment explanation
Indices: 75406454--75407187 Score: 605
Period size: 134 Copynumber: 5.6 Consensus size: 133
75406444 TAAAATAAAG
* * * * * * * *
75406454 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG--CATCAGGTCTTATCTCCCTGATGTTAC
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAAATCAAGTCTTATCTCCCTGAGGTTAC
* * *
75406517 AGTGGAGTAGACCGAAGAATTTTAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGCC
66 AGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTAAGGTTACAGTGGAGCAGATCGAAGCC
75406582 ACA
131 ACA
* * * *
75406585 AACCTTATCTCCCTGAAGTTACAGTGGGGCAGGTTGAATATGCAAGTCTTATCTCCCTGAGGTTA
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAAAT-CAAGTCTTATCTCCCTGAGGTTA
* *
75406650 CAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTAAGGTTACAGTGGAGTAGATTGAAGC
65 CAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTAAGGTTACAGTGGAGCAGATCGAAGC
*
75406715 CAGA
130 CACA
*
75406719 GATCTTATCTCCCTGAAGTTACAGTGGAGC-GGATT-AAAATAAAAGATCTTATCTCCCTGAGGT
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGG-TTGAAAAT-CAAG-TCTTATCTCCCTGAGGT
* * * * * *
75406782 TACAGTGGAGCAG-CTTGAAGCCA---GAGATCTTATCTCCCTAAGATTACAGCGGAGCAGATCG
63 TACAGTGGAGTAGAC-CGAAG-AATTTCAGATCTTATCTCCCTAAGGTTACAGTGGAGCAGATCG
*
75406843 AAGACAC-
126 AAGCCACA
* * * * * * * *
75406850 TATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG--CATCAGGTCTTATCTCCCTGAGGTTAC
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAAATCAAGTCTTATCTCCCTGAGGTTAC
* * * *
75406913 AGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAACAAATTGAAGCC
66 AGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTAAGGTTACAGTGGAGCAGATCGAAGCC
*
75406978 AGA
131 ACA
** * * * * * *
75406981 GATCTTATCTCCCTG-AGATTACAGCAGAACAGATCGAAGACA-CTA-TCCTATCTCCCTGAAGT
1 GATCTTATCTCCCTGAAG-TTACAGTGGAGCAGGTTGAA-A-ATCAAGTCTTATCTCCCTGAGGT
** ** ** * ** *
75407043 TACAGTGGAGCGGA-TTAA-AA-TAAAGGATCTTATCTCTCTGAA-GTTACAGTAAAGTAGATC-
63 TACAGTGGAGTAGACCGAAGAATTTCA-GATCTTATCTCCCT-AAGGTTACAGTGGAGCAGATCG
75407103 --G-CATCA
126 AAGCCA-CA
* * * * *
75407109 GGTCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAATTTC-AGATCTTATCTCCCTGAGG
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAA-AA--TCAAG-TCTTATCTCCCTGAGG
75407173 TTACAGTGGAGTAGA
62 TTACAGTGGAGTAGA
75407188 TTGAAGCCAG
Statistics
Matches: 488, Mismatches: 87, Indels: 56
0.77 0.14 0.09
Matches are distributed among these distances:
127 4 0.01
128 67 0.14
129 5 0.01
130 43 0.09
131 137 0.28
132 42 0.09
133 39 0.08
134 149 0.31
135 2 0.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (133 bp):
GATCTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAAATCAAGTCTTATCTCCCTGAGGTTAC
AGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTAAGGTTACAGTGGAGCAGATCGAAGCC
ACA
Found at i:75407075 original size:218 final size:217
Alignment explanation
Indices: 75406371--75407233 Score: 820
Period size: 218 Copynumber: 3.9 Consensus size: 217
75406361 TTTCAGATCT
* * *
75406371 TATCTCTCTG-AGATTACAGTGGAGCGGATTAAAATAAAAGATCCTATCTCCCTGAAGTTACAGT
1 TATCTCCCTGAAG-TTACAGTGGAGCGGATTAAAAT-AAAGATCTTATCTCTCTGAAGTTACAGT
* * *** * * * * *
75406435 GGAG-CGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATC---GCA--TC
64 AGAGTAG-A-TCGCAT-CAGG-TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAATTTC
* * * ** * *
75406494 AGGTCTTATCTCCCTGATGTTACAGTGGAGTAGACCGAAG-AATTTTAGATCTTATCTCCCTGAG
125 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA---GAGATCTTATCTCCCTGAG
* * *
75406558 GTTACAGTGGAGTAGATCGAAGCCACAAACC
187 ATTACAGTGGAGCAGATCGAAGCCACAATCC
* * * * *
75406589 TTATCTCCCTGAAGTTACAGTGGGGCAGG-TTGAATATGCAAG-TCTTATCTCCCTGAGGTTACA
1 -TATCTCCCTGAAGTTACAGTGGAGC-GGATT-AAAAT-AAAGATCTTATCTCTCTGAAGTTACA
* * * * * * *
75406652 GTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTAAGGTTACAGTGGAGTAGATTGAAGCCA
62 GTAGAGTAGATC---GCA--TCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAG-AA
* * * * *** *
75406717 ---GAGATCTTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAAGATCTTATCTCCCTGA
121 TTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGA
* * * * *
75406779 GGTTACAGTGGAGCAGCTTGAAGCCAGAGATCT
186 GATTACAGTGGAGCAGATCGAAGCCACA-ATCC
* * * * * **
75406812 TATCTCCCT-AAGATTACAGCGGAGCAGATCGAAGA-CACTATCTTATCTCTCTGAAGTTACAGT
1 TATCTCCCTGAAG-TTACAGTGGAGCGGAT-TAAAATAAAGATCTTATCTCTCTGAAGTTACAGT
*
75406875 AGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGAT
64 AGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAATTTCAGAT
* *
75406940 CTTATCTCCCTGAGGTTACAGTGGAACAAATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAG
129 CTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAG
** * * *
75407005 CAGAACAGATCGAAGACACTATCC
194 TGGAGCAGATCGAAGCCACAATCC
75407029 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTA
1 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAA-GATCTTATCTCTCTGAAGTTACAGTA
*
75407094 AAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAATTTCAGATC
65 GAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAATTTCAGATC
* *
75407159 TTATCTCCCTGAGGTTACAGTGGAGTAGATTGAAGCCAGAGATCTTATCTTCCTGAGATTACAGT
130 TTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGT
75407224 GGAGCAGATC
195 GGAGCAGATC
75407234 ACATCAAGTC
Statistics
Matches: 532, Mismatches: 87, Indels: 51
0.79 0.13 0.08
Matches are distributed among these distances:
215 1 0.00
216 41 0.08
217 27 0.05
218 232 0.44
219 48 0.09
220 14 0.03
221 63 0.12
222 66 0.12
223 3 0.01
224 33 0.06
225 4 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (217 bp):
TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGATCTTATCTCTCTGAAGTTACAGTAG
AGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAATTTCAGATCT
TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGTG
GAGCAGATCGAAGCCACAATCC
Found at i:75407204 original size:262 final size:260
Alignment explanation
Indices: 75406540--75407226 Score: 652
Period size: 262 Copynumber: 2.6 Consensus size: 260
75406530 GAAGAATTTT
* * *** * * * *
75406540 AGATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGCCACAAACCTTATCTCCCTGAAGTT
1 AGATCTTATCTCCCTAAGATTACAGCAAAGCAGATCGAAGACAC-GATCTTATCTCCCTGAAGTT
* * * * *
75406605 ACAGTGGGGCAGGTTGAAT-ATGCAAGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGA
65 ACAGTAGAGTAGATCGAATCA-G--A-TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGA
* ** *
75406669 ATTTCAGATCTTATCTCCCTAAGGTTACAGTGGAGTAGATTGAAGCCAGAGATCTTATCTCCCTG
126 A--TCAGATCTTATCTCCCTGAGGTTACAGTGGAACAAATTGAAGCCAGAGATCTTATCTCCCTG
** * * * * * * *
75406734 AAGTTACAGTGGAGCGGATTAAAATAAAAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGCTTG
189 AAGTTACAGCAGAACAGATTAAAAGAAAAGATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTA
**
75406799 AAGCCAG
254 AAGAAAG
** * *
75406806 AGATCTTATCTCCCTAAGATTACAGCGGAGCAGATCGAAGACACTATCTTATCTCTCTGAAGTTA
1 AGATCTTATCTCCCTAAGATTACAGCAAAGCAGATCGAAGACACGATCTTATCTCCCTGAAGTTA
* *
75406871 CAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTC
66 CAGTAGAGTAGATCGAATCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAA--TC
75406936 AGATCTTATCTCCCTGAGGTTACAGTGGAACAAATTGAAGCCAGAGATCTTATCTCCCTG-AGAT
129 AGATCTTATCTCCCTGAGGTTACAGTGGAACAAATTGAAGCCAGAGATCTTATCTCCCTGAAG-T
** * ** * *
75407000 TACAGCAGAACAGA-TCGAAGACACTATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAAT
193 TACAGCAGAACAGATTAAAAGAAAAGATCCTATCTCCCTGAAGTTACAGTGGAGCAGATT-AAAG
75407064 AAAG
257 AAAG
* * * * * * *
75407068 -GATCTTATCTCTCTGAAG-TTACAGTAAAGTAGATCGCA-TCA-GGTCTTATCTCCCTGAGGTT
1 AGATCTTATCTCCCT-AAGATTACAGCAAAGCAGATCGAAGACACGATCTTATCTCCCTGAAGTT
* **
75407129 ACAGTGGAGTAGATCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGATTGAAG
65 ACAGTAGAGTAGATC---GAA--TCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAG
* * * *
75407194 CCA-GAGATCTTATCTTCCTGAGATTACAGTGGA
125 -AATCAGATCTTATCTCCCTGAGGTTACAGTGGA
75407227 GCAGATCACA
Statistics
Matches: 354, Mismatches: 57, Indels: 24
0.81 0.13 0.06
Matches are distributed among these distances:
259 30 0.08
260 2 0.01
261 65 0.18
262 146 0.41
264 39 0.11
265 32 0.09
266 40 0.11
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (260 bp):
AGATCTTATCTCCCTAAGATTACAGCAAAGCAGATCGAAGACACGATCTTATCTCCCTGAAGTTA
CAGTAGAGTAGATCGAATCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATCAG
ATCTTATCTCCCTGAGGTTACAGTGGAACAAATTGAAGCCAGAGATCTTATCTCCCTGAAGTTAC
AGCAGAACAGATTAAAAGAAAAGATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGAAAG
Found at i:75407284 original size:218 final size:213
Alignment explanation
Indices: 75406672--75407308 Score: 654
Period size: 218 Copynumber: 2.9 Consensus size: 213
75406662 CCGAAGAATT
* * * * *
75406672 TCAGATCTTATCTCCCTAAGGTTACAGTGGAGTAGATTGAAGCCA---GAGATCTTATCTCCCTG
1 TCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAG-AATTTCAGATCTTATCTCCCTG
* * * *** * * * *
75406734 AAGTTACAGTGGAGCGGATTAAAATAAAAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGCTTG
65 AGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGTGGAGCAG-ATC
* *
75406799 A-AGCCAGAGATCTTATCTCCCTAAGATTACAGCGGAGCAGATCG-AAGACACT---ATCTTATC
129 ACA--CA-AG-TCTTATCTCCCTAAGA-T--AGTGGAGCAGA-CGAAAGA-AATAAAATCTTATC
*
75406859 TCTCTGAAGTTACAGTAGAGTAGATCGCA
185 TCTCTGAAGTTACAGTAAAGTAGATCGCA
*
75406888 TCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGA
1 TCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAATTTCAGATCTTATCTCCCTGA
* * ** *
75406953 GGTTACAGTGGAACAAATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCAGAACAGATCGA
66 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGTGGAGCAGATC--
* * * *
75407018 AGACACTA-TCCTATCTCCCTGAAGTTACAGTGGAGC-G--GATTA-AAATAAAGGATCTTATCT
129 --ACACAAGTCTTATCTCCCT-AAG--ATAGTGGAGCAGACGA-AAGAAATAAA--ATCTTATCT
75407078 CTCTGAAGTTACAGTAAAGTAGATCGCA
186 CTCTGAAGTTACAGTAAAGTAGATCGCA
75407106 TCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAATTTCAGATCTTATCTCCCTGA
1 TCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAATTTCAGATCTTATCTCCCTGA
* *
75407171 GGTTACAGTGGAGTAGATTGAAGCCAGAGATCTTATCTTCCTGAGATTACAGTGGAGCAGATCAC
66 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGTGGAGCAGATCAC
* * *
75407236 ATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAT-AAATCCTATCTCCCCGAA
131 A-CAAGTCTTATCTCCCTAAG-A-TAGTGGAGCAGACGAAAGAAATAAAATCTTATCTCTCTGAA
*
75407300 GTTGCAGTA
193 GTTACAGTA
75407309 GAGTGGATAA
Statistics
Matches: 351, Mismatches: 45, Indels: 51
0.79 0.10 0.11
Matches are distributed among these distances:
213 3 0.01
214 5 0.01
215 36 0.10
216 51 0.15
217 22 0.06
218 229 0.65
219 1 0.00
220 2 0.01
221 1 0.00
222 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.27
Consensus pattern (213 bp):
TCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAATTTCAGATCTTATCTCCCTGA
GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGTGGAGCAGATCAC
ACAAGTCTTATCTCCCTAAGATAGTGGAGCAGACGAAAGAAATAAAATCTTATCTCTCTGAAGTT
ACAGTAAAGTAGATCGCA
Found at i:75407478 original size:134 final size:134
Alignment explanation
Indices: 75407233--75407791 Score: 1109
Period size: 134 Copynumber: 4.2 Consensus size: 134
75407223 TGGAGCAGAT
*
75407233 CACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAATAAATCCTATCTCCCCG
1 CACAACAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAATAAATCCTATCTCCCCG
75407298 AAGTTGCAGTAGAGTGGATAAAAGTCAATCCTATACCTCCGAAGTTGCAGTAGGTCAGATTAAAT
66 AAGTTGCAGTAGAGTGGATAAAAGTCAATCCTATACCTCCGAAGTTGCAGTAGGTCAGATTAAAT
75407363 CTAC
131 CTAC
75407367 CACAACAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAATAAATCCTATCTCCCCG
1 CACAACAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAATAAATCCTATCTCCCCG
75407432 AAGTTGCAGTAGAGTGGATAAAAGTCAATCCTATACCTCCGAAGTTGCAGTAGGTCAGATTAAAT
66 AAGTTGCAGTAGAGTGGATAAAAGTCAATCCTATACCTCCGAAGTTGCAGTAGGTCAGATTAAAT
75407497 CTAC
131 CTAC
75407501 CACAACAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAATAAATCCTATCTCCCCG
1 CACAACAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAATAAATCCTATCTCCCCG
75407566 AAGTTGCAGTAGAGTGGATAAAAGTCAATCCTATACCTCCGAAGTTGCAGTAGGTCAGATTAAAT
66 AAGTTGCAGTAGAGTGGATAAAAGTCAATCCTATACCTCCGAAGTTGCAGTAGGTCAGATTAAAT
75407631 CTAC
131 CTAC
75407635 CACAACAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAATAAATCCTATCTCCCCG
1 CACAACAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAATAAATCCTATCTCCCCG
75407700 AAGTTGCAGTAGAGTGGATAAAAGTCAATCCTATACCTCCGAAGTTGCAGTAGGTCAGATTAAAT
66 AAGTTGCAGTAGAGTGGATAAAAGTCAATCCTATACCTCCGAAGTTGCAGTAGGTCAGATTAAAT
75407765 CTAC
131 CTAC
75407769 CACAACAAGTCTTATCTCCCTAA
1 CACAACAAGTCTTATCTCCCTAA
75407792 CATTGAAGTG
Statistics
Matches: 424, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
134 424 1.00
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (134 bp):
CACAACAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAATAAATCCTATCTCCCCG
AAGTTGCAGTAGAGTGGATAAAAGTCAATCCTATACCTCCGAAGTTGCAGTAGGTCAGATTAAAT
CTAC
Found at i:75409498 original size:23 final size:22
Alignment explanation
Indices: 75409446--75409499 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
75409436 TACACCTACT
75409446 TATATATA-TTTTTATATTCTA
1 TATATATATTTTTTATATTCTA
* * *
75409467 TAATCTATATTTTTTTTATTTTCA
1 T-ATATATATTTTTTATATTCT-A
75409491 TATATATAT
1 TATATATAT
75409500 ATATGTATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 1 0.04
22 6 0.23
23 17 0.65
24 2 0.08
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (22 bp):
TATATATATTTTTTATATTCTA
Found at i:75409500 original size:25 final size:24
Alignment explanation
Indices: 75409446--75409503 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
75409436 TACACCTACT
75409446 TATATATA-TTTTTATATTCTATAA
1 TATATATATTTTTTATATTCTAT-A
* * *
75409470 TCTATATTTTTTTTATTTTCATATA
1 TATATATATTTTTTATATTC-TATA
75409495 TATATATAT
1 TATATATAT
75409504 GTATATACAT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
24 6 0.22
25 18 0.67
26 3 0.11
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (24 bp):
TATATATATTTTTTATATTCTATA
Found at i:75409760 original size:4 final size:4
Alignment explanation
Indices: 75409751--75409791 Score: 82
Period size: 4 Copynumber: 10.2 Consensus size: 4
75409741 TAACTTAAAA
75409751 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
75409792 TATTTTCATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 37 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:75419767 original size:116 final size:116
Alignment explanation
Indices: 75419547--75419772 Score: 328
Period size: 116 Copynumber: 1.9 Consensus size: 116
75419537 TTGAATCAAT
* * *
75419547 AAAACTAATGTTCTCATATTTTCAGATTGAGTTAATTCAAAACCCTAAATTTACCGACTGAGTCT
1 AAAACTAATGTTCTCACATTCTCAGATTGAGTTAATTCAAAACCCTAAACTTACCGACTGAGTCT
** * *
75419612 CAATTCGATTAATATCGACATTATTGTCGGTGCAAGAAGAGGTGATAGTTC
66 CAATTCGATTAATATCGACATTATTACCAGTACAAGAAGAGGTGATAGTTC
*
75419663 AAAACATAATGTTCTCACATTCTC-GATTGAGTTAATTCAAAACCCTAAACTTACCGATTGAGTC
1 AAAAC-TAATGTTCTCACATTCTCAGATTGAGTTAATTCAAAACCCTAAACTTACCGACTGAGTC
* ** *
75419727 TCAATTTGATTGGTATCGACATTATTACCAGTACAGGAAGAGGTGA
65 TCAATTCGATTAATATCGACATTATTACCAGTACAAGAAGAGGTGA
75419773 GTTCGAGCAT
Statistics
Matches: 97, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
116 81 0.84
117 16 0.16
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.32
Consensus pattern (116 bp):
AAAACTAATGTTCTCACATTCTCAGATTGAGTTAATTCAAAACCCTAAACTTACCGACTGAGTCT
CAATTCGATTAATATCGACATTATTACCAGTACAAGAAGAGGTGATAGTTC
Found at i:75426028 original size:24 final size:24
Alignment explanation
Indices: 75426001--75426052 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
75425991 TTAGTAAGTC
*
75426001 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
75426025 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
75426049 AAAT
1 AAAT
75426053 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:75427969 original size:28 final size:29
Alignment explanation
Indices: 75427938--75427998 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 29
75427928 TTTTAATTGA
* * *
75427938 ATTTTATATAATTTTTA-TTTATTTCATT
1 ATTTTAGATAATTTTAACTTTATGTCATT
* *
75427966 ATTTTAGATTATTTTAACTTTATGTCTTT
1 ATTTTAGATAATTTTAACTTTATGTCATT
75427995 ATTT
1 ATTT
75427999 AAAATATGGT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 14 0.52
29 13 0.48
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.66
Consensus pattern (29 bp):
ATTTTAGATAATTTTAACTTTATGTCATT
Found at i:75438190 original size:48 final size:48
Alignment explanation
Indices: 75438108--75438201 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
75438098 TTTCTTGGCT
* *
75438108 TAAAAACGCCTAAGTCAACCTAACTTCCACCAATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAACCTAACTTCCAACAATAAAGGATTCAACCG
75438156 TAAAAACGCCTAAGTCAA-CTCAAC-TCGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAACCT-AACTTC-CAACAATAAAGGATTCAAC
75438202 AGAATTCCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 4 0.10
48 38 0.90
ACGTcount: A:0.43, C:0.28, G:0.11, T:0.19
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAACCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:75442720 original size:48 final size:48
Alignment explanation
Indices: 75442638--75442731 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
75442628 TTTCTTGGCT
* *
75442638 TAAAAACGCCTAAGTCAGCCTAACTTCCACCAATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
*
75442686 TAAAAACGCCTAAGTTAG-CTCAAC-TCGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
75442732 AGAATTCCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
47 4 0.10
48 37 0.90
ACGTcount: A:0.40, C:0.27, G:0.13, T:0.20
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:75451548 original size:32 final size:32
Alignment explanation
Indices: 75451512--75451575 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
75451502 CAAAACAATT
* *
75451512 ATCATCATATGTGCAGGTACTTTTCATATGAA
1 ATCATCATATATACAGGTACTTTTCATATGAA
75451544 ATCATCATATATACAGGTACTTTTCATATGAA
1 ATCATCATATATACAGGTACTTTTCATATGAA
75451576 CATTTTTATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (32 bp):
ATCATCATATATACAGGTACTTTTCATATGAA
Found at i:75452200 original size:33 final size:33
Alignment explanation
Indices: 75452154--75452227 Score: 105
Period size: 33 Copynumber: 2.3 Consensus size: 33
75452144 TCAAAAGAAC
* ** *
75452154 AAAT-TTTGTAAATGTTTTGTTAGTAGCTTTAG
1 AAATATTTGTAAATGATTCATTAGTAGCTCTAG
75452186 AAATATTTGTAAATGATTCATTAGTAGCTCTAG
1 AAATATTTGTAAATGATTCATTAGTAGCTCTAG
75452219 AAATATTTG
1 AAATATTTG
75452228 CCTTAATATT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
32 4 0.11
33 33 0.89
ACGTcount: A:0.34, C:0.05, G:0.16, T:0.45
Consensus pattern (33 bp):
AAATATTTGTAAATGATTCATTAGTAGCTCTAG
Found at i:75457102 original size:10 final size:10
Alignment explanation
Indices: 75457079--75457171 Score: 66
Period size: 10 Copynumber: 9.3 Consensus size: 10
75457069 TTAAAATATT
*
75457079 AAAAATTAGGA
1 AAAAATTA-TA
*
75457090 AAAAATCATA
1 AAAAATTATA
*
75457100 AAAAAATATA
1 AAAAATTATA
*
75457110 AAAATTTAT-
1 AAAAATTATA
75457119 AAAAATTATAA
1 AAAAATTAT-A
75457130 AAAAATT-TA
1 AAAAATTATA
*
75457139 AAATA-TATA
1 AAAAATTATA
* * *
75457148 GAAATATGAAA
1 -AAAAATTATA
75457159 AAAAATTATA
1 AAAAATTATA
75457169 AAA
1 AAA
75457172 TTTTATAAAG
Statistics
Matches: 64, Mismatches: 13, Indels: 11
0.73 0.15 0.12
Matches are distributed among these distances:
8 1 0.02
9 15 0.23
10 32 0.50
11 16 0.25
ACGTcount: A:0.69, C:0.01, G:0.04, T:0.26
Consensus pattern (10 bp):
AAAAATTATA
Found at i:75457112 original size:19 final size:19
Alignment explanation
Indices: 75457090--75457171 Score: 67
Period size: 19 Copynumber: 4.2 Consensus size: 19
75457080 AAAATTAGGA
75457090 AAAAATCATA-AAAAAATAT
1 AAAAAT-ATATAAAAAATAT
* *
75457109 AAAAATTTATAAAAATTAT
1 AAAAATATATAAAAAATAT
* * *
75457128 AAAAAAATTTAAAATATAT
1 AAAAATATATAAAAAATAT
* *
75457147 AGAAATATGAAAAAAAATTAT
1 AAAAATAT-ATAAAAAA-TAT
75457168 AAAA
1 AAAA
75457172 TTTTATAAAG
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
18 2 0.04
19 34 0.72
20 5 0.11
21 6 0.13
ACGTcount: A:0.70, C:0.01, G:0.02, T:0.27
Consensus pattern (19 bp):
AAAAATATATAAAAAATAT
Found at i:75457122 original size:29 final size:28
Alignment explanation
Indices: 75457090--75457180 Score: 94
Period size: 29 Copynumber: 3.1 Consensus size: 28
75457080 AAAATTAGGA
75457090 AAAAATCATAAAAAAATATAAAAATTTAT
1 AAAAAT-ATAAAAAAATATAAAAATTTAT
* *
75457119 AAAAATTATAAAAAAAT-TTAAAATATAT
1 AAAAA-TATAAAAAAATATAAAAATTTAT
* *
75457147 AGAAATATGAAAAAAAATTATAAAATTTTAT
1 AAAAATAT--AAAAAAA-TATAAAAATTTAT
75457178 AAA
1 AAA
75457181 GTTGTAAGAA
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
27 3 0.06
28 13 0.26
29 22 0.44
30 2 0.04
31 10 0.20
ACGTcount: A:0.67, C:0.01, G:0.02, T:0.30
Consensus pattern (28 bp):
AAAAATATAAAAAAATATAAAAATTTAT
Found at i:75457438 original size:10 final size:10
Alignment explanation
Indices: 75457425--75457492 Score: 56
Period size: 9 Copynumber: 7.3 Consensus size: 10
75457415 TTTTGATGCA
75457425 TTTTATAATT
1 TTTTATAATT
*
75457435 TTTT-TTATT
1 TTTTATAATT
**
75457444 TTTTA-CGTT
1 TTTTATAATT
75457453 TTTTATAATT
1 TTTTATAATT
*
75457463 TTTAATAA-T
1 TTTTATAATT
*
75457472 TTTTA-ATTT
1 TTTTATAATT
75457481 TTTTAT-ATT
1 TTTTATAATT
75457490 TTT
1 TTT
75457493 ATTAAAATTT
Statistics
Matches: 45, Mismatches: 9, Indels: 9
0.71 0.14 0.14
Matches are distributed among these distances:
8 1 0.02
9 31 0.69
10 13 0.29
ACGTcount: A:0.24, C:0.01, G:0.01, T:0.74
Consensus pattern (10 bp):
TTTTATAATT
Found at i:75457456 original size:28 final size:28
Alignment explanation
Indices: 75457425--75457493 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 28
75457415 TTTTGATGCA
** * *
75457425 TTTTATAATTTTTTTTATTTTTTACGTT
1 TTTTATAATTTTTAATAATTTTTAAGTT
*
75457453 TTTTATAATTTTTAATAATTTTTAATTT
1 TTTTATAATTTTTAATAATTTTTAAGTT
75457481 TTTTAT-ATTTTTA
1 TTTTATAATTTTTA
75457494 TTAAAATTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 7 0.19
28 29 0.81
ACGTcount: A:0.25, C:0.01, G:0.01, T:0.72
Consensus pattern (28 bp):
TTTTATAATTTTTAATAATTTTTAAGTT
Found at i:75457483 original size:37 final size:38
Alignment explanation
Indices: 75457424--75457510 Score: 92
Period size: 37 Copynumber: 2.3 Consensus size: 38
75457414 TTTTTGATGC
**
75457424 ATTTT-ATAATTTTTTTTATTTTTTACGT-TTTTTA-TAA
1 ATTTTAATAATTTTTAATATTTTTTA--TATTTTTATTAA
*
75457461 TTTTTAATAATTTTTAAT-TTTTTTATATTTTTATTAA
1 ATTTTAATAATTTTTAATATTTTTTATATTTTTATTAA
*
75457498 AATTTAATAATTT
1 ATTTTAATAATTT
75457511 ACCTAAAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
35 1 0.02
36 6 0.14
37 25 0.60
38 10 0.24
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.68
Consensus pattern (38 bp):
ATTTTAATAATTTTTAATATTTTTTATATTTTTATTAA
Found at i:75457503 original size:27 final size:28
Alignment explanation
Indices: 75457451--75457505 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
75457441 ATTTTTTACG
**
75457451 TTTTTTATAATTTTTAATAATTTTTAAT
1 TTTTTTATAATTTTTAATAAAATTTAAT
*
75457479 TTTTTTAT-ATTTTTATTAAAATTTAAT
1 TTTTTTATAATTTTTAATAAAATTTAAT
75457506 AATTTACCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 16 0.67
28 8 0.33
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (28 bp):
TTTTTTATAATTTTTAATAAAATTTAAT
Found at i:75457723 original size:90 final size:87
Alignment explanation
Indices: 75457562--75457751 Score: 202
Period size: 90 Copynumber: 2.2 Consensus size: 87
75457552 ATAAGAGCAG
* * * * * **
75457562 GGGCTTAATTGCTTTTTTGAAGAATTTTGAGAGTCTTTTTGATGCATTTTGAATGTTCAAGTACC
1 GGGCTTAATTGCTTTTTTGAAAAAGTTTGAAAGCCTTTTTGATGCATTTTAAAAATTCAAGTACC
*
75457627 CAATTGAGTGCAACAAAAAAATAA
66 CAATTGAGCGCAA-AAAAAAA-AA
* * * * *
75457651 GGGCTTAATTGATTTTTTTGAAAAAGTTTGAAAGCCTTTTTTATGTATTTTAAAAATTTAAGTGC
1 GGGCTTAATTG-CTTTTTTGAAAAAGTTTGAAAGCCTTTTTGATGCATTTTAAAAATTCAAGTAC
* *
75457716 TCGATTGAGCGCAAAAAAAAAAA
65 CCAATTGAGCGCAAAAAAAAAAA
*
75457739 -GACTTAATTGCTT
1 GGGCTTAATTGCTT
75457752 CTTCTTTTTT
Statistics
Matches: 83, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
86 2 0.02
87 9 0.11
88 2 0.02
89 18 0.22
90 52 0.63
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (87 bp):
GGGCTTAATTGCTTTTTTGAAAAAGTTTGAAAGCCTTTTTGATGCATTTTAAAAATTCAAGTACC
CAATTGAGCGCAAAAAAAAAAA
Found at i:75457829 original size:22 final size:22
Alignment explanation
Indices: 75457804--75457852 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
75457794 AATATATATT
75457804 ATAAATTAAAAATATAT-TTAAA
1 ATAAATT-AAAATATATGTTAAA
75457826 AT-AATTAAAATATATGTTAAA
1 ATAAATTAAAATATATGTTAAA
*
75457847 TTAAAT
1 ATAAAT
75457853 CGATTTTTCG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 9 0.38
21 10 0.42
22 5 0.21
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (22 bp):
ATAAATTAAAATATATGTTAAA
Found at i:75457835 original size:20 final size:22
Alignment explanation
Indices: 75457807--75457846 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
75457797 ATATATTATA
75457807 AATTAAAAATATAT-TTAAAAT
1 AATTAAAAATATATGTTAAAAT
75457828 AATT-AAAATATATGTTAAA
1 AATTAAAAATATATGTTAAA
75457847 TTAAATCGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (22 bp):
AATTAAAAATATATGTTAAAAT
Found at i:75457847 original size:20 final size:20
Alignment explanation
Indices: 75457794--75457847 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 20
75457784 CCTTAAGCCT
*
75457794 AATATATATTATA-AATTAAA
1 AATATAT-TTAAATAATTAAA
75457814 AATATATTTAAAATAATT-AA
1 AATATATTT-AAATAATTAAA
75457834 AATATATGTTAAAT
1 AATATAT-TTAAAT
75457848 TAAATCGATT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 2 0.07
20 22 0.73
21 6 0.20
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (20 bp):
AATATATTTAAATAATTAAA
Found at i:75462964 original size:32 final size:33
Alignment explanation
Indices: 75462906--75462973 Score: 77
Period size: 32 Copynumber: 2.1 Consensus size: 33
75462896 AAATTTCAAT
*
75462906 AAATAAAAAATATATACAATTATT-AAATATTA
1 AAATAAAAAATATATACAATTATTAAAAAATTA
* * *
75462938 AAATAAAATAA-ATATATATTTTTTAAAAAATTA
1 AAATAAAA-AATATATACAATTATTAAAAAATTA
75462971 AAA
1 AAA
75462974 ACTAATATTG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
32 18 0.60
33 12 0.40
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.35
Consensus pattern (33 bp):
AAATAAAAAATATATACAATTATTAAAAAATTA
Found at i:75463844 original size:20 final size:21
Alignment explanation
Indices: 75463809--75463849 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
75463799 ACTCAATTGG
*
75463809 AACATAAATTGACATT-TTCA
1 AACATAAATGGACATTATTCA
*
75463829 AACATAAATGGCCATTATTCA
1 AACATAAATGGACATTATTCA
75463850 TTTAAATCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.44, C:0.17, G:0.07, T:0.32
Consensus pattern (21 bp):
AACATAAATGGACATTATTCA
Found at i:75464734 original size:24 final size:25
Alignment explanation
Indices: 75464684--75464735 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 25
75464674 TCTTTTTGAA
**
75464684 TTTTTAGAAAACTTTTTATGTTTAT
1 TTTTTAGAAAACTTTTTATGTGCAT
75464709 TTTTTA-AAAA-TTTTTGATGTGCAT
1 TTTTTAGAAAACTTTTT-ATGTGCAT
75464733 TTT
1 TTT
75464736 CCATTGTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 5 0.21
24 13 0.54
25 6 0.25
ACGTcount: A:0.27, C:0.04, G:0.10, T:0.60
Consensus pattern (25 bp):
TTTTTAGAAAACTTTTTATGTGCAT
Found at i:75475235 original size:15 final size:16
Alignment explanation
Indices: 75475215--75475246 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
75475205 ATAACAATTG
75475215 AATTGT-TAAAATATT
1 AATTGTATAAAATATT
75475230 AATTGTATAAAATATT
1 AATTGTATAAAATATT
75475246 A
1 A
75475247 CGAAATTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (16 bp):
AATTGTATAAAATATT
Found at i:75475796 original size:13 final size:13
Alignment explanation
Indices: 75475748--75475797 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
75475738 CTTAATGGAG
*
75475748 TAAAATGTTTTAAA
1 TAAAAT-TTTTTAA
**
75475762 TAAAATAATTTAA
1 TAAAATTTTTTAA
*
75475775 TAAATTTTTTTAA
1 TAAAATTTTTTAA
75475788 TAAAATTTTT
1 TAAAATTTTT
75475798 AACTAGCTGT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
13 23 0.79
14 6 0.21
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (13 bp):
TAAAATTTTTTAA
Found at i:75476493 original size:13 final size:13
Alignment explanation
Indices: 75476445--75476494 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
75476435 CTTAATGGAG
*
75476445 TAAAATGTTTTAAA
1 TAAAAT-TTTTTAA
**
75476459 TAAAATAATTTAA
1 TAAAATTTTTTAA
*
75476472 TAAATTTTTTTAA
1 TAAAATTTTTTAA
75476485 TAAAATTTTT
1 TAAAATTTTT
75476495 AACTATCTGT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
13 23 0.79
14 6 0.21
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (13 bp):
TAAAATTTTTTAA
Found at i:75477184 original size:25 final size:26
Alignment explanation
Indices: 75477137--75477186 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
75477127 TAATGGAGTA
75477137 AAATGTTTTAAATAAAATAATTTAAT
1 AAATGTTTTAAATAAAATAATTTAAT
* * *
75477163 AAATTTTTTTAATAAAGT-ATTTAA
1 AAATGTTTTAAATAAAATAATTTAA
75477187 CTAGCTGTGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 6 0.29
26 15 0.71
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (26 bp):
AAATGTTTTAAATAAAATAATTTAAT
Found at i:75477594 original size:696 final size:696
Alignment explanation
Indices: 75475444--75477743 Score: 4252
Period size: 691 Copynumber: 3.3 Consensus size: 696
75475434 TTTTTTTTAT
*
75475444 CAAAATTTGTCAATTTGGCATGTTGATTAGGTTTAGGGGTGAATCTAGGGGGCTGGCAGGGGCCC
1 CAAAATTTGTCAATTTGGCATGTTGATTAGGTTTAGGGGTGAATCTAGGGGGCTAGCAGGGGCCC
** *
75475509 TAGCCCCCATGGAAAATTTTTCATTTTGTCCCTTTGAATTTTTTAAAATTTTAAATTAGTAAAGG
66 TAGCCCCCATGGAAAATTTCCCATTTTGTCCCTTTGAATTTTTTAAAATATTAAATTAGTAAAGG
* *
75475574 TAAAATTGCACTTTGGCTCTCCCTAAAAATAATAAAATTTTGATTTAATCCTTTAAAAATTGTAT
131 TAAAATTGCACTTTGACTCCCCCTAAAAATAATAAAATTTTGATTTAATCCTTTAAAAATTGTAT
75475639 TTTTACTATAGTAAAAATTACTATTATTATCCTTTTCTAGTGACGGTTTTTTATTTTTTACATTA
196 TTTTACTATAGTAAAAATTACTATTATTATCCTTTTCTAGTGACGGTTTTTTATTTTTT-CATTA
75475704 ATTAGAGTATAATTAAAGAATTAAAACAAATCAACTTAATGGAGTAAAATGTTTTAAATAAAATA
260 ATTAGAGTATAATTAAAGAATTAAAACAAATCAACTTAATGGAGTAAAATGTTTTAAATAAAATA
75475769 ATTTAATAAATTTTTTTAATAAAATTTTTAACTAGCTGTGATCCATCATAGTGATTACTAGGATT
325 ATTTAATAAATTTTTTTAATAAAATTTTTAACTAGCTGTGATCCATCATAGTGATTACTAGGATT
*
75475834 TTGTATGTCAAAATTAACAAAAAGAAAAAGAAAAAGAGAATGCTACTAAATTAAAATAATTCTAA
390 TTGTATGTCAAAAGTAACAAAAAGAAAAAGAAAAAGAGAATGCTACTAAATTAAAATAATTCTAA
75475899 GTGGGTAGAATACTATTTTTTTCAATAAAATTTGAAATTATGATTGTGTGAAATTTTGTGTATAT
455 GTGGGTAGAATACTATTTTTTTCAATAAAATTTGAAATTATGATTGTGTGAAATTTTGTGTATAT
75475964 TTACATGTTTATTTAAGAAATAATAACATTTTGGTAGTGGCATTGTTCTCGGTTCAAGAGGACGT
520 TTACATGTTTATTTAAGAAATAATAACATTTTGGTAGTGGCATTGTTCTCGGTTCAAGAGGACGT
75476029 GAGTTCGGATGCGTTAAAACGCATTTATACCTTCTATGCAATAATAGATATGATCTTCTGAATCT
585 GAGTTCGGATGCGTTAAAACGCATTTATACCTTCTATGCAATAATAGATATGATCTTCTGAATCT
75476094 CTTTCTTCTTCACAAATGTCACAGTAATTTTGTCCTGAATCATCTTC
650 CTTTCTTCTTCACAAATGTCACAGTAATTTTGTCCTGAATCATCTTC
75476141 CAAAATTTGTCAATTTGGCATGTTGATTAGGTTTAGGGGTGAATCTAGGGGGCTAGCAGGGGCCC
1 CAAAATTTGTCAATTTGGCATGTTGATTAGGTTTAGGGGTGAATCTAGGGGGCTAGCAGGGGCCC
*
75476206 TAGCCCCTATGGAAAATTTCCCATTTTGTCCCTTTGAATTTTTTAAAATATTAAATTAGTAAAGG
66 TAGCCCCCATGGAAAATTTCCCATTTTGTCCCTTTGAATTTTTTAAAATATTAAATTAGTAAAGG
* *
75476271 TAAAATTGCACTTTGACTCCCCCTAATAATAATAAAATTTTGATTTAATCTTTTAAAAATTGTAT
131 TAAAATTGCACTTTGACTCCCCCTAAAAATAATAAAATTTTGATTTAATCCTTTAAAAATTGTAT
*
75476336 TTTTACTATAGGAAAAATTACTATTATTATCCTTTTCTAGTGACGGTTTTTTATTTTTTTCATTA
196 TTTTACTATAGTAAAAATTACTATTATTATCCTTTTCTAGTGACGGTTTTTTA-TTTTTTCATTA
*
75476401 ATTAGAGTATAGTTAAAGAATTAAAACAAATCAACTTAATGGAGTAAAATGTTTTAAATAAAATA
260 ATTAGAGTATAATTAAAGAATTAAAACAAATCAACTTAATGGAGTAAAATGTTTTAAATAAAATA
*
75476466 ATTTAATAAATTTTTTTAATAAAATTTTTAACTATCTGTGATCCATCATAGTGATTACTAGGATT
325 ATTTAATAAATTTTTTTAATAAAATTTTTAACTAGCTGTGATCCATCATAGTGATTACTAGGATT
*
75476531 TTGTATGTCAAAAGTAATAAAAAGAAAAAG----A-A-AATGCTACTAAATTAAAATAATTCTAA
390 TTGTATGTCAAAAGTAACAAAAAGAAAAAGAAAAAGAGAATGCTACTAAATTAAAATAATTCTAA
75476590 GTGGGTAGAATACTATTTTTTTCAATAAAATTTGAAATTATGATTGTGTGAAATTTTGTGTATAT
455 GTGGGTAGAATACTATTTTTTTCAATAAAATTTGAAATTATGATTGTGTGAAATTTTGTGTATAT
75476655 TTACATGTTTATTTAAGAAATAATAACATTTTGGTAGTGGCATTGTTCTCGGTTCAAGAGGACGT
520 TTACATGTTTATTTAAGAAATAATAACATTTTGGTAGTGGCATTGTTCTCGGTTCAAGAGGACGT
75476720 GAGTTCGGATGCGTTAAAACGCATTTATACCTTCTATGCAATAATAGATATGATCTTCTGAATCT
585 GAGTTCGGATGCGTTAAAACGCATTTATACCTTCTATGCAATAATAGATATGATCTTCTGAATCT
75476785 CTTTCTTCTTCACAAATGTCACAGTAATTTTGTCCTGAATCATCTTC
650 CTTTCTTCTTCACAAATGTCACAGTAATTTTGTCCTGAATCATCTTC
75476832 CAAAATTTGTCAATTTGGCATGTTGATTAGGTTTAGGGGTGAATCTAGGGGGCTAGCAGGGGCCC
1 CAAAATTTGTCAATTTGGCATGTTGATTAGGTTTAGGGGTGAATCTAGGGGGCTAGCAGGGGCCC
75476897 TAGCCCCCATGGAAAATTTCCCATTTTGTCCCTTTGAATTTTTTAAAATATTAAATTAGTAAAGG
66 TAGCCCCCATGGAAAATTTCCCATTTTGTCCCTTTGAATTTTTTAAAATATTAAATTAGTAAAGG
* * *
75476962 TAAAATTGCACTTTGGCTCCCCCTAATAATAATAAAATTTTGATTTAATCTTTTAAAAATTGTAT
131 TAAAATTGCACTTTGACTCCCCCTAAAAATAATAAAATTTTGATTTAATCCTTTAAAAATTGTAT
75477027 TTTTACTATAGTAAAAATTACTATTATTATCCTTTTCTAGTGACGGTTTTTTATTTTTTCATTAA
196 TTTTACTATAGTAAAAATTACTATTATTATCCTTTTCTAGTGACGGTTTTTTATTTTTTCATTAA
* * *
75477092 TTAGAGTATATTTAAAGAATTAAAACAAATCAGCGTAATGGAGTAAAATGTTTTAAATAAAATAA
261 TTAGAGTATAATTAAAGAATTAAAACAAATCAACTTAATGGAGTAAAATGTTTTAAATAAAATAA
* *
75477157 TTTAATAAATTTTTTTAATAAAGTATTTAACTAGCTGTGATCCATCATAGTGATTACTAGGATTT
326 TTTAATAAATTTTTTTAATAAAATTTTTAACTAGCTGTGATCCATCATAGTGATTACTAGGATTT
75477222 TGTATGTCAAAAGTAACAAAAAGAAAAAGAAAAAGAGAATGCTACTAAATTAAAATAATTCTAAG
391 TGTATGTCAAAAGTAACAAAAAGAAAAAGAAAAAGAGAATGCTACTAAATTAAAATAATTCTAAG
75477287 TGGGTAGAATACTATTTTTTTCAATAAAATTTGAAATTATGATTGTGTGAAATTTTGTGTATATT
456 TGGGTAGAATACTATTTTTTTCAATAAAATTTGAAATTATGATTGTGTGAAATTTTGTGTATATT
* *
75477352 TACATGTTTATTTAAGAAATAATAACAATTTGGTAGTGGCATTGTTCTCGGTTCAAGAGGACATG
521 TACATGTTTATTTAAGAAATAATAACATTTTGGTAGTGGCATTGTTCTCGGTTCAAGAGGACGTG
*
75477417 ATTTCGGATGCGTTAAAACGCATTTATACCTTCTATGCAATAATAGATATGATCTTCTGAATCTC
586 AGTTCGGATGCGTTAAAACGCATTTATACCTTCTATGCAATAATAGATATGATCTTCTGAATCTC
*
75477482 TTTCTTCTTCACAAATGTAACAGTAATTTTGTCCTGAATCATCTTC
651 TTTCTTCTTCACAAATGTCACAGTAATTTTGTCCTGAATCATCTTC
* * * *
75477528 CAAAATTTATCAATTTGGCATGTTGATTAGGTTTAGGGATGAATCTAGGGGGCTGGTAGGGGCCC
1 CAAAATTTGTCAATTTGGCATGTTGATTAGGTTTAGGGGTGAATCTAGGGGGCTAGCAGGGGCCC
75477593 TAGCCCCCATGGAAAATTTCCCATTTTGTCCCTTTGAATTTTTTAAAATATTAAATTAGTAAAGG
66 TAGCCCCCATGGAAAATTTCCCATTTTGTCCCTTTGAATTTTTTAAAATATTAAATTAGTAAAGG
*
75477658 TAAAATTGCACTTTGACTCCCCCTAAAAATGATAAAATTTTGATTTAATCCTTTAAAAATTGTAT
131 TAAAATTGCACTTTGACTCCCCCTAAAAATAATAAAATTTTGATTTAATCCTTTAAAAATTGTAT
*
75477723 TTTGACTATAGTAAAAATTAC
196 TTTTACTATAGTAAAAATTAC
75477744 AATTTAATTT
Statistics
Matches: 1559, Mismatches: 37, Indels: 15
0.97 0.02 0.01
Matches are distributed among these distances:
690 164 0.11
691 514 0.33
692 1 0.00
693 1 0.00
694 1 0.00
695 1 0.00
696 472 0.30
697 399 0.26
698 6 0.00
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.39
Consensus pattern (696 bp):
CAAAATTTGTCAATTTGGCATGTTGATTAGGTTTAGGGGTGAATCTAGGGGGCTAGCAGGGGCCC
TAGCCCCCATGGAAAATTTCCCATTTTGTCCCTTTGAATTTTTTAAAATATTAAATTAGTAAAGG
TAAAATTGCACTTTGACTCCCCCTAAAAATAATAAAATTTTGATTTAATCCTTTAAAAATTGTAT
TTTTACTATAGTAAAAATTACTATTATTATCCTTTTCTAGTGACGGTTTTTTATTTTTTCATTAA
TTAGAGTATAATTAAAGAATTAAAACAAATCAACTTAATGGAGTAAAATGTTTTAAATAAAATAA
TTTAATAAATTTTTTTAATAAAATTTTTAACTAGCTGTGATCCATCATAGTGATTACTAGGATTT
TGTATGTCAAAAGTAACAAAAAGAAAAAGAAAAAGAGAATGCTACTAAATTAAAATAATTCTAAG
TGGGTAGAATACTATTTTTTTCAATAAAATTTGAAATTATGATTGTGTGAAATTTTGTGTATATT
TACATGTTTATTTAAGAAATAATAACATTTTGGTAGTGGCATTGTTCTCGGTTCAAGAGGACGTG
AGTTCGGATGCGTTAAAACGCATTTATACCTTCTATGCAATAATAGATATGATCTTCTGAATCTC
TTTCTTCTTCACAAATGTCACAGTAATTTTGTCCTGAATCATCTTC
Found at i:75484239 original size:18 final size:18
Alignment explanation
Indices: 75484216--75484251 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
75484206 AATAATTTTT
*
75484216 TTTTATCATTTATGTTTG
1 TTTTATCATTCATGTTTG
*
75484234 TTTTATGATTCATGTTTG
1 TTTTATCATTCATGTTTG
75484252 AAGTTTGTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (18 bp):
TTTTATCATTCATGTTTG
Found at i:75500414 original size:26 final size:26
Alignment explanation
Indices: 75500378--75500427 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
75500368 CTAAATTAGG
75500378 CCTTCGTGAGATAAGATATGAGAAGA
1 CCTTCGTGAGATAAGATATGAGAAGA
75500404 CCTTCGTGAGATAAGATATGAGAA
1 CCTTCGTGAGATAAGATATGAGAA
75500428 ACCCACTCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.24
Consensus pattern (26 bp):
CCTTCGTGAGATAAGATATGAGAAGA
Found at i:75503235 original size:81 final size:81
Alignment explanation
Indices: 75503141--75503325 Score: 361
Period size: 81 Copynumber: 2.3 Consensus size: 81
75503131 AATATAGATT
75503141 ATTAAAACATTCACAATAGATCATTAAAATTTTAGTAATAATTGAATTTACGATAGAACTAATTA
1 ATTAAAACATTCACAATAGATCATTAAAATTTTAGTAATAATTGAATTTACGATAGAACTAATTA
75503206 TGAGTTAAAGGAGCTC
66 TGAGTTAAAGGAGCTC
75503222 ATTAAAACATTCACAATAGATCATTAAAATTTTAGTAATAATTGAATTTACGATAGAACTAATTA
1 ATTAAAACATTCACAATAGATCATTAAAATTTTAGTAATAATTGAATTTACGATAGAACTAATTA
75503287 TGAGTTAAAGGAGCTC
66 TGAGTTAAAGGAGCTC
*
75503303 ATTAAAACATTCACAATTGATCA
1 ATTAAAACATTCACAATAGATCA
75503326 AAGGCCAAAT
Statistics
Matches: 103, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 103 1.00
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.33
Consensus pattern (81 bp):
ATTAAAACATTCACAATAGATCATTAAAATTTTAGTAATAATTGAATTTACGATAGAACTAATTA
TGAGTTAAAGGAGCTC
Found at i:75506258 original size:40 final size:40
Alignment explanation
Indices: 75506204--75506399 Score: 191
Period size: 40 Copynumber: 4.8 Consensus size: 40
75506194 GTTTCTTCTG
*
75506204 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATACGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATTCGA
* * **
75506244 TCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTTTAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-T-GATTCGA
* * * * *
75506287 TCCGCTCCACT-GTAACTTCAGGGAGATATGA-TTGATTTTTTTG-
1 TCTGCTCCACTACT-GCTT-AGGGAGATAAGACTTGA----TTCGA
*
75506330 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATTCGA
75506370 TCTGCTCCACTACTGCTTAGGGAGATAAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA
75506400 TCTGTGGTTT
Statistics
Matches: 126, Mismatches: 18, Indels: 24
0.75 0.11 0.14
Matches are distributed among these distances:
39 2 0.02
40 60 0.48
41 3 0.02
42 14 0.11
43 32 0.25
44 15 0.12
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.32
Consensus pattern (40 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATTCGA
Found at i:75506379 original size:126 final size:126
Alignment explanation
Indices: 75506144--75506485 Score: 603
Period size: 126 Copynumber: 2.7 Consensus size: 126
75506134 CATGGGAATG
* * * * * *
75506144 AGATTTGTGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGC
1 AGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATATGATTGATTT-TTTTGTCTGC
*
75506209 TCCACTACTGCTTAGGGAGATAAGACTTGATACGATCTGTTCCACTACTGCTTAGGGAGATA
65 TCCACTACTGCTTAGGGAGATAAGACTTGATACGATCTGCTCCACTACTGCTTAGGGAGATA
75506271 AGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATATGATTGATTTTTTTGTCTGCT
1 AGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATATGATTGATTTTTTTGTCTGCT
*
75506336 CCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATA
66 CCACTACTGCTTAGGGAGATAAGACTTGATACGATCTGCTCCACTACTGCTTAGGGAGATA
75506397 AGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATATGATTGATTTTTTTGTCTGCT
1 AGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATATGATTGATTTTTTTGTCTGCT
75506462 CCACTACTGCTTAGGGAGATAAGA
66 CCACTACTGCTTAGGGAGATAAGA
75506486 TCTGCAATCT
Statistics
Matches: 207, Mismatches: 8, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
126 158 0.76
127 49 0.24
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (126 bp):
AGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATATGATTGATTTTTTTGTCTGCT
CCACTACTGCTTAGGGAGATAAGACTTGATACGATCTGCTCCACTACTGCTTAGGGAGATA
Found at i:75506627 original size:132 final size:131
Alignment explanation
Indices: 75506456--75507532 Score: 1336
Period size: 132 Copynumber: 8.2 Consensus size: 131
75506446 GATTTTTTTG
* * * *
75506456 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAACCTACTT-CACTGCTACTCAG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTA-TTCCACTGCTGCCCAG
*** * *
75506520 GGAGATGAG-GCCACTGGCTTTAATGTACTCCACTATAATC-TCAGGGAGGTAAAATCCGCCATC
65 GGA-ATGAGAATTACTGGCTTCAATGTACTCCACTGTAA-CAT-AGGGAGGTAAAATCCGCCATC
*
75506583 TTCGA
127 TTCAA
* *
75506588 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAATCTATTCCACTGCTGCCCAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGG
* *
75506653 GAGAT-AGAATTACTGGCTTCAATGTACTCCACTGTAATC-TCAGTGAGGTAAAATCTGCCATCT
66 GA-ATGAGAATTACTGGCTTCAATGTACTCCACTGTAA-CAT-AGGGAGGTAAAATCCGCCATCT
*
75506716 TCGA
128 TCAA
* * *
75506720 TCTGCTCCACTACTGTTTAGGGAGATAAGATCTGTAATCTTTAATCTATTCCACTGCTGCCCAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGG
* *
75506785 GAGAT-AGAATTACTGGCTTCAATGTACTCCACTGTAACAACAGGGAGGTAAAATCTGCCATCTT
66 GA-ATGAGAATTACTGGCTTCAATGTACTCCACTGTAAC-ATAGGGAGGTAAAATCCGCCATCTT
*
75506849 TAA
129 CAA
* * * *
75506852 TCTGCTCCACTACTGCTTAGGGGGATAAGATCTGTAATCTTTAATCTATTCCACTACTGCCCAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGG
* *
75506917 GAGAT-AGAACTT-CTAGCTTCAATGTACTCCACTGTAACAATAAGGAGGTAAAATCCGCCATCT
66 GA-ATGAGAA-TTACTGGCTTCAATGTACTCCACTGTAAC-ATAGGGAGGTAAAATCCGCCATCT
75506980 TCAA
128 TCAA
* * * *
75506984 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAATCTATTCCACTGTTGTCTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGG
** *
75507049 GAA-GTAGAATTTTTGGCTTCAATGTACTCCACTGTAACAATAAGGAGGTAAAATCCGCCATCTT
66 GAATG-AGAATTACTGGCTTCAATGTACTCCACTGTAAC-ATAGGGAGGTAAAATCCGCCATCTT
75507113 CAA
129 CAA
* * * *
75507116 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAATCTATTCCACTGTTGTCTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGG
** *
75507181 GAA-GTAGAATTTTTGGCTTCAATGTACTCCACTGTAACAATAAGGAGGTAAAATCCGCCATCTT
66 GAATG-AGAATTACTGGCTTCAATGTACTCCACTGTAAC-ATAGGGAGGTAAAATCCGCCATCTT
75507245 CAA
129 CAA
* * * *
75507248 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAATCTATTCCACTGTTGTCTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGG
** * *
75507313 GAA-GTAGAATTTTTGGCTTCAATGTACTCCACTGTAACAACAGGGAGGTAAAATCGGCCATCTT
66 GAATG-AGAATTACTGGCTTCAATGTACTCCACTGTAAC-ATAGGGAGGTAAAATCCGCCATCTT
*
75507377 CGA
129 CAA
* *
75507380 TCTGCTCCACTACTGCTTAGGGAGAAAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGG
75507445 GAA-GTAGAATTTA-TGGCTTCAATGTACT-C-C-G---C-T---GAGGTAAAATCCGCCATCTT
66 GAATG-AGAA-TTACTGGCTTCAATGTACTCCACTGTAACATAGGGAGGTAAAATCCGCCATCTT
*
75507498 CGA
129 CAA
75507501 TCTGCTCCACTACTGCTTAGGGAGATAAGATC
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATC
75507533 GGTGGTTTTA
Statistics
Matches: 889, Mismatches: 47, Indels: 29
0.92 0.05 0.03
Matches are distributed among these distances:
121 53 0.06
126 1 0.00
129 1 0.00
130 1 0.00
131 9 0.01
132 820 0.92
133 4 0.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (131 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGG
GAATGAGAATTACTGGCTTCAATGTACTCCACTGTAACATAGGGAGGTAAAATCCGCCATCTTCA
A
Found at i:75506628 original size:44 final size:44
Alignment explanation
Indices: 75506204--75506922 Score: 254
Period size: 44 Copynumber: 16.6 Consensus size: 44
75506194 GTTTCTTCTG
* *
75506204 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGATAC---GA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-CTTTAA
* **
75506244 TCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTGGT-TTTAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAA
* * * * * * **
75506287 TCCGCTCCACT-GTAACTTCAGGGAGATATGAT-TG-ATTTTTTTG
1 TCTGCTCCACTACT-GCTT-AGGGAGATAAGATCTGTAATCTTTAA
* *
75506330 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGATGC---GA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-CTTTAA
**
75506370 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGT-TTTAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAA
* * * * * * **
75506413 TCCGCTCCACT-GTAACTTCAGGGAGATATGAT-TG-ATTTTTTTG
1 TCTGCTCCACTACT-GCTT-AGGGAGATAAGATCTGTAATCTTTAA
* *
75506456 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAA
* * * * * * * ** ** **
75506500 CCTACTTCACTGCTACTCAGGGAGATGAGGCCACT-GGCTTTAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAA
* * * * * * * ** **
75506543 TGTACTCCACTA-TAATCTCAGGGAGGTAAAATCCGCCATCTTCGA
1 TCTGCTCCACTACT--GCTTAGGGAGATAAGATCTGTAATCTTTAA
75506588 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAA
** * ** * * *
75506632 TCTATTCCACTGCTGCCCAGGGAGAT-AGA-AT-TACTGGCTTCAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT--CTTTAA
* * * * * * * ** **
75506675 TGTACTCCACTGTAAT-CTCAGTGAGGTAAAATCTGCCATCTTCGA
1 TCTGCTCCAC--TACTGCTTAGGGAGATAAGATCTGTAATCTTTAA
*
75506720 TCTGCTCCACTACTGTTTAGGGAGATAAGATCTGTAATCTTTAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAA
** * ** * * *
75506764 TCTATTCCACTGCTGCCCAGGGAGAT-AGA-AT-TACTGGCTTCAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT--CTTTAA
* * ** * * **
75506807 TGTACTCCACTGTAACAAC--AGGGAGGTAAAATCTGCCATCTTTAA
1 TCTGCTCCAC--T-ACTGCTTAGGGAGATAAGATCTGTAATCTTTAA
*
75506852 TCTGCTCCACTACTGCTTAGGGGGATAAGATCTGTAATCTTTAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAA
** **
75506896 TCTATTCCACTACTGCCCAGGGAGATA
1 TCTGCTCCACTACTGCTTAGGGAGATA
75506923 GAACTTCTAG
Statistics
Matches: 483, Mismatches: 151, Indels: 86
0.67 0.21 0.12
Matches are distributed among these distances:
40 59 0.12
41 10 0.02
42 41 0.08
43 114 0.24
44 205 0.42
45 47 0.10
46 5 0.01
47 2 0.00
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.31
Consensus pattern (44 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAA
Found at i:75507029 original size:44 final size:44
Alignment explanation
Indices: 75506334--75507302 Score: 247
Period size: 44 Copynumber: 22.2 Consensus size: 44
75506324 TTTTTGTCTG
* * *
75506334 CTCCACTACTGCTTAGGGAGATAAGA-CTTG--A--TGCGATCTG
1 CTCCACTACTGCTTAGGGAGATAAGATC-TGCAATCTTCAATCTA
*** * **
75506374 CTCCACTACTGCTTAGGGAGATAAGATCTGTGGT-TTTAATCCG
1 CTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAATCTA
* * * * * *** *
75506417 CTCCACT-GTAACTTCAGGGAGATATGAT-TG-ATTTTTTTGTCTG
1 CTCCACTACT-GCTT-AGGGAGATAAGATCTGCAATCTTCAATCTA
*
75506460 CTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAATCTA
* * * * * * * * *
75506504 CTTCACTGCTACTCAGGGAGATGAG-GC--CACTGGCTTTAATGTA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGCAAT--CTTCAATCTA
* * * * * * * *
75506547 CTCCACTA-TAATCTCAGGGAGGTAAAATCCGCCATCTTCGATCTG
1 CTCCACTACT--GCTTAGGGAGATAAGATCTGCAATCTTCAATCTA
* *
75506592 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAATCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAATCTA
* * ** * *** *
75506636 TTCCACTGCTGCCCAGGGAGAT-AGAAT-TACTGGCTTCAATGTA
1 CTCCACTACTGCTTAGGGAGATAAG-ATCTGCAATCTTCAATCTA
* * * * * * * *
75506679 CTCCACTGTAAT-CTCAGTGAGGTAAAATCTGCCATCTTCGATCTG
1 CTCCAC--TACTGCTTAGGGAGATAAGATCTGCAATCTTCAATCTA
* * *
75506724 CTCCACTACTGTTTAGGGAGATAAGATCTGTAATCTTTAATCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAATCTA
* * ** * *** *
75506768 TTCCACTGCTGCCCAGGGAGAT-AGAAT-TACTGGCTTCAATGTA
1 CTCCACTACTGCTTAGGGAGATAAG-ATCTGCAATCTTCAATCTA
** * * * * *
75506811 CTCCACTGTAACAAC--AGGGAGGTAAAATCTGCCATCTTTAATCTG
1 CTCCAC--T-ACTGCTTAGGGAGATAAGATCTGCAATCTTCAATCTA
* * *
75506856 CTCCACTACTGCTTAGGGGGATAAGATCTGTAATCTTTAATCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAATCTA
* ** * * * * *
75506900 TTCCACTACTGCCCAGGGAGAT-AGAACTTCTAGCTTCAATGTA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAATCTA
* * * * * * * * *
75506943 CTCCACT-GTAACAATAAGGAGGTAAAATCCGCCATCTTCAATCTG
1 CTCCACTACT-GC-TTAGGGAGATAAGATCTGCAATCTTCAATCTA
**
75506988 CTCCACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAATCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAATCTA
* ** ***** *
75507032 TTCCACTGTTG-TCTAGGGA-AGT-AGAAT-TTTTGGCTTCAATGTA
1 CTCCACTACTGCT-TAGGGAGA-TAAG-ATCTGCAATCTTCAATCTA
* * * * * * * * *
75507075 CTCCACT-GTAACAATAAGGAGGTAAAATCCGCCATCTTCAATCTG
1 CTCCACTACT-GC-TTAGGGAGATAAGATCTGCAATCTTCAATCTA
**
75507120 CTCCACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAATCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAATCTA
* ** ***** *
75507164 TTCCACTGTTG-TCTAGGGA-AGT-AGAAT-TTTTGGCTTCAATGTA
1 CTCCACTACTGCT-TAGGGAGA-TAAG-ATCTGCAATCTTCAATCTA
* * * * * * * * *
75507207 CTCCACT-GTAACAATAAGGAGGTAAAATCCGCCATCTTCAATCTG
1 CTCCACTACT-GC-TTAGGGAGATAAGATCTGCAATCTTCAATCTA
**
75507252 CTCCACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAATCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAATCTA
*
75507296 TTCCACT
1 CTCCACT
75507303 GTTGTCTAGG
Statistics
Matches: 640, Mismatches: 233, Indels: 108
0.65 0.24 0.11
Matches are distributed among these distances:
40 28 0.04
41 4 0.01
42 21 0.03
43 146 0.23
44 328 0.51
45 105 0.16
46 6 0.01
47 2 0.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (44 bp):
CTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAATCTA
Found at i:75507829 original size:44 final size:43
Alignment explanation
Indices: 75507771--75508031 Score: 207
Period size: 44 Copynumber: 6.0 Consensus size: 43
75507761 AGATCTATTT
*
75507771 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCA
1 TCTTCGATCTACTTC-CCACCAATATGGGAAGACAAGATCTGCA
* * * * * * *
75507815 TCTTCGATCCACTTCCTACTAATATAGGAAGACATGACCTACTA
1 TCTTCGATCTACTTCCCACCAATATGGGAAGACAAGATCTGC-A
* * *** * * *
75507859 TCTTCGATCTACTTCACGCCAATACATGAAGACAATATCTACT
1 TCTTCGATCTACTTCCCACCAATATGGGAAGACAAGATCTGCA
* ** * * *
75507902 TTTTTTATCTATTTCGCCACCAGTATGGGAAGACAAGATCCGCA
1 TCTTCGATCTACTTC-CCACCAATATGGGAAGACAAGATCTGCA
* * * *
75507946 TCTTCAATCCACTTCCTACCAATATGGGAAGACAAGACCTGCTA
1 TCTTCGATCTACTTCCCACCAATATGGGAAGACAAGATCTGC-A
* * ***
75507990 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGC
1 TCTTCGATCTACTTCCCACCAATATGGGAAGACAAGATCTGC
75508032 TTTAATGACT
Statistics
Matches: 163, Mismatches: 51, Indels: 6
0.74 0.23 0.03
Matches are distributed among these distances:
43 54 0.33
44 109 0.67
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (43 bp):
TCTTCGATCTACTTCCCACCAATATGGGAAGACAAGATCTGCA
Found at i:75508011 original size:131 final size:131
Alignment explanation
Indices: 75507760--75508034 Score: 435
Period size: 131 Copynumber: 2.1 Consensus size: 131
75507750 TCAGAGAGAT
* * *
75507760 AAGATCTA-TTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATC
1 AAGATCTACTTTT-TT-TATCTACTTCGCCACCAGTATGGGAAGACAAGATCCGCATCTTCAATC
* *
75507824 CACTTCCTACTAATATAGGAAGACATGACCTACTATCTTCGATCTACTTCACGCCAATACATGAA
64 CACTTCCTACCAATATAGGAAGACAAGACCTACTATCTTCGATCTACTTCACGCCAATACATGAA
75507889 GAC
129 GAC
* *
75507892 AATATCTACTTTTTTTATCTATTTCGCCACCAGTATGGGAAGACAAGATCCGCATCTTCAATCCA
1 AAGATCTACTTTTTTTATCTACTTCGCCACCAGTATGGGAAGACAAGATCCGCATCTTCAATCCA
* *
75507957 CTTCCTACCAATATGGGAAGACAAGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGA
66 CTTCCTACCAATATAGGAAGACAAGACCTACTATCTTCGATCTACTTCACGCCAATACATGAAGA
75508022 C
131 C
*
75508023 AAGATCTGCTTT
1 AAGATCTACTTT
75508035 AATGACTTCA
Statistics
Matches: 131, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
131 118 0.90
132 9 0.07
133 4 0.03
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.29
Consensus pattern (131 bp):
AAGATCTACTTTTTTTATCTACTTCGCCACCAGTATGGGAAGACAAGATCCGCATCTTCAATCCA
CTTCCTACCAATATAGGAAGACAAGACCTACTATCTTCGATCTACTTCACGCCAATACATGAAGA
C
Found at i:75508707 original size:108 final size:108
Alignment explanation
Indices: 75508518--75508713 Score: 320
Period size: 108 Copynumber: 1.8 Consensus size: 108
75508508 GAAAAATGCT
* *
75508518 TGAAAAAGATTATCAAAATTGACAAAATGAAATTTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
1 TGAAAAAGATTATCAAAATAGACAAAATGAAAATTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
75508583 CAATCAAGATAGCAAATTTTGCTGAGATACGAGATGTATAAGA
66 CAATCAAGATAGCAAATTTTGCTGAGATACGAGATGTATAAGA
* * * **
75508626 TGAAAAAGATTATCACAATAGATAAGATGAAAATTTGTTGAGAGCAAAGCTCTAAATGAACAAAT
1 TGAAAAAGATTATCAAAATAGACAAAATGAAAATTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
*
75508691 TAATCAAGATAGCAAATTTTGCT
66 CAATCAAGATAGCAAATTTTGCT
75508714 AGAATACAAA
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
108 80 1.00
ACGTcount: A:0.47, C:0.11, G:0.16, T:0.26
Consensus pattern (108 bp):
TGAAAAAGATTATCAAAATAGACAAAATGAAAATTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
CAATCAAGATAGCAAATTTTGCTGAGATACGAGATGTATAAGA
Found at i:75509574 original size:15 final size:17
Alignment explanation
Indices: 75509540--75509578 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
75509530 GTTTTTTTAT
*
75509540 TTTTTTTGTCTCTTTTG
1 TTTTTTTGTCTCTTTGG
75509557 TTTTTTTGT-T-TTTGG
1 TTTTTTTGTCTCTTTGG
75509572 TTTTTTT
1 TTTTTTT
75509579 TCCACTGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 11 0.52
16 1 0.05
17 9 0.43
ACGTcount: A:0.00, C:0.05, G:0.13, T:0.82
Consensus pattern (17 bp):
TTTTTTTGTCTCTTTGG
Found at i:75511039 original size:26 final size:26
Alignment explanation
Indices: 75511001--75511055 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
75510991 CAACTTTACT
*
75511001 AGAAAACAGATCTCTTTACATAAAGC
1 AGAAAACAAATCTCTTTACATAAAGC
75511027 AGAAAACAAATCTCTTTACATAAAGC
1 AGAAAACAAATCTCTTTACATAAAGC
75511053 AGA
1 AGA
75511056 TATATATACG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.49, C:0.18, G:0.11, T:0.22
Consensus pattern (26 bp):
AGAAAACAAATCTCTTTACATAAAGC
Found at i:75513888 original size:21 final size:21
Alignment explanation
Indices: 75513862--75513901 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
75513852 AATAAATACC
*
75513862 AAAAAATTATTTTAAAAATTA
1 AAAAAAGTATTTTAAAAATTA
75513883 AAAAAAGTATTTTAAAAAT
1 AAAAAAGTATTTTAAAAAT
75513902 ATTTTAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (21 bp):
AAAAAAGTATTTTAAAAATTA
Found at i:75513904 original size:11 final size:11
Alignment explanation
Indices: 75513863--75513991 Score: 75
Period size: 12 Copynumber: 12.4 Consensus size: 11
75513853 ATAAATACCA
75513863 AAAAATTATTTT
1 AAAAA-TATTTT
**
75513875 -AAAA-ATTAA
1 AAAAATATTTT
75513884 AAAAAGTATTTT
1 AAAAA-TATTTT
75513896 AAAAATATTTT
1 AAAAATATTTT
75513907 --AAA-A--TT
1 AAAAATATTTT
*
75513913 AAAAA-AATTT
1 AAAAATATTTT
75513923 AAAAAGTATTTT
1 AAAAA-TATTTT
75513935 AAAAATATTTT
1 AAAAATATTTT
*
75513946 --AAA-A-TTA
1 AAAAATATTTT
**
75513953 AAAAATAATAAT
1 AAAAAT-ATTTT
75513965 AAAAAGTATTTT
1 AAAAA-TATTTT
75513977 AAAAATATTTT
1 AAAAATATTTT
75513988 AAAA
1 AAAA
75513992 TTAAAAAAAT
Statistics
Matches: 91, Mismatches: 11, Indels: 31
0.68 0.08 0.23
Matches are distributed among these distances:
6 2 0.02
7 2 0.02
8 6 0.07
9 12 0.13
10 11 0.12
11 27 0.30
12 30 0.33
13 1 0.01
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:75513929 original size:39 final size:39
Alignment explanation
Indices: 75513875--75514008 Score: 214
Period size: 39 Copynumber: 3.3 Consensus size: 39
75513865 AAATTATTTT
*
75513875 AAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTAA
1 AAAAATT-TAAAAAGTATTTTAAAAATATTTTAAAATTAA
75513915 AAAAATTTAAAAAGTATTTTAAAAATATTTTAAAATTAAA
1 AAAAATTTAAAAAGTATTTTAAAAATATTTTAAAATT-AA
*
75513955 AAATAATAATAAAAAGTATTTTAAAAATATTTTAAAATTAA
1 AAA-AAT-TTAAAAAGTATTTTAAAAATATTTTAAAATTAA
75513996 AAAAATTTAAAAA
1 AAAAATTTAAAAA
75514009 AATAAATATA
Statistics
Matches: 88, Mismatches: 3, Indels: 7
0.90 0.03 0.07
Matches are distributed among these distances:
39 35 0.40
40 15 0.17
41 8 0.09
42 30 0.34
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (39 bp):
AAAAATTTAAAAAGTATTTTAAAAATATTTTAAAATTAA
Found at i:75514008 original size:17 final size:17
Alignment explanation
Indices: 75513894--75513927 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
75513884 AAAAAGTATT
* *
75513894 TTAAAAATATTTTAAAA
1 TTAAAAAAATTTAAAAA
75513911 TTAAAAAAATTTAAAAA
1 TTAAAAAAATTTAAAAA
75513928 GTATTTTAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TTAAAAAAATTTAAAAA
Found at i:75517061 original size:13 final size:11
Alignment explanation
Indices: 75517029--75517071 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
75517019 CCGTTTTTTA
*
75517029 AATAAAATAAT
1 AATAAAATATT
75517040 AAT-AAATATCT
1 AATAAAATAT-T
75517051 AAGTAAAATATT
1 AA-TAAAATATT
75517063 AATAAAATA
1 AATAAAATA
75517072 ATATTTAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 5 0.18
11 13 0.46
12 4 0.14
13 6 0.21
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (11 bp):
AATAAAATATT
Found at i:75545774 original size:21 final size:21
Alignment explanation
Indices: 75545726--75545774 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 21
75545716 TATATTCAAT
75545726 TATTAATTTTTAAGGATAAAAA
1 TATT-ATTTTTAAGGATAAAAA
*
75545748 TAATTATTTTTAA-TATAAAAA
1 T-ATTATTTTTAAGGATAAAAA
75545769 GTATTA
1 -TATTA
75545775 AAATTTTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
21 11 0.46
22 10 0.42
23 3 0.12
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (21 bp):
TATTATTTTTAAGGATAAAAA
Found at i:75550147 original size:30 final size:30
Alignment explanation
Indices: 75550091--75550147 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
75550081 AAAATTCAAA
* *
75550091 TCTTTTTAAAGGTTGATGGTTAAATTTGAC
1 TCTTTTTAAAGGTCGATGGGTAAATTTGAC
*
75550121 TCTTTTTAAAAGGTCGA-GGGTCAATTT
1 TCTTTTT-AAAGGTCGATGGGTAAATTT
75550148 AGCTATATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
30 15 0.65
31 8 0.35
ACGTcount: A:0.26, C:0.09, G:0.21, T:0.44
Consensus pattern (30 bp):
TCTTTTTAAAGGTCGATGGGTAAATTTGAC
Found at i:75552109 original size:12 final size:12
Alignment explanation
Indices: 75552094--75552138 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
75552084 AAATGAGTAA
*
75552094 ATAATAATGATG
1 ATAATAATAATG
75552106 ATAATAATAATG
1 ATAATAATAATG
75552118 -TAAT-ATAAT-
1 ATAATAATAATG
75552127 AGTAATAATAAT
1 A-TAATAATAAT
75552139 ATTAAAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
10 5 0.17
11 8 0.28
12 16 0.55
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.36
Consensus pattern (12 bp):
ATAATAATAATG
Found at i:75552131 original size:11 final size:12
Alignment explanation
Indices: 75552093--75552149 Score: 57
Period size: 11 Copynumber: 4.8 Consensus size: 12
75552083 TAAATGAGTA
75552093 AATAATAATGATGAT
1 AATAATAAT-A-G-T
75552108 AATAATAAT-GT
1 AATAATAATAGT
75552119 AAT-ATAATAGT
1 AATAATAATAGT
*
75552130 AATAATAATATT
1 AATAATAATAGT
75552142 AA-AATAAT
1 AATAATAAT
75552150 TAATTTAATG
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
10 5 0.13
11 15 0.38
12 10 0.26
15 9 0.23
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (12 bp):
AATAATAATAGT
Found at i:75553766 original size:44 final size:44
Alignment explanation
Indices: 75553710--75554585 Score: 412
Period size: 44 Copynumber: 20.2 Consensus size: 44
75553700 AACTTTACGA
* * *
75553710 AGATAGGA-TTGGTTTCTTCTGTCTGCTTCACTACTGCTTAGGG
1 AGATAAGACTTGGTATCTTCTGTCTGCTCCACTACTGCTTAGGG
* *
75553753 AGATAATACTTGG----TGC-GATCTGCTCCACTACTGCTTAGGG
1 AGATAAGACTTGGTATCTTCTG-TCTGCTCCACTACTGCTTAGGG
* * *
75553793 AGATAAGA-TTGGTTTCTTTTGTCTACTCCACTACTGCTTAGGG
1 AGATAAGACTTGGTATCTTCTGTCTGCTCCACTACTGCTTAGGG
* * *
75553836 AGATAAGACTT-G-A---TGTGATCTACTCCACTACTGCTTAAGG
1 AGATAAGACTTGGTATCTTCTG-TCTGCTCCACTACTGCTTAGGG
* * *
75553876 AGATAAGAATT-GTCATCTT-TGACCTGCTCCACTACTGCTTAAGG
1 AGATAAGACTTGGT-ATCTTCTG-TCTGCTCCACTACTGCTTAGGG
** *** * *
75553920 AGATAAGAC-TGGTGGCTTAAATCTGCTTCACTACTGCTTAGGA
1 AGATAAGACTTGGTATCTTCTGTCTGCTCCACTACTGCTTAGGG
* **
75553963 AGATAA-AATTCGCCATCTTC-GATCTGCTCCACTACTGCTTAGGG
1 AGATAAGACTT-GGTATCTTCTG-TCTGCTCCACTACTGCTTAGGG
** *
75554007 AGATAAGATCTACCGTA--TT-TGACCTGCTCCACTACTGCTTAGGG
1 AGATAAGA-CT-TGGTATCTTCTG-TCTGCTCCACTACTGCTTAGGG
*** *
75554051 AGATAAGA-TCTACCATCTTC-GACCTGCTCCACTACTGCTTAGGG
1 AGATAAGACT-TGGTATCTTCTG-TCTGCTCCACTACTGCTTAGGG
* ** *** * *
75554095 AGATAGGAC-TGGTGGCTTAAATCTGCTTCACTACTGCTTAGGA
1 AGATAAGACTTGGTATCTTCTGTCTGCTCCACTACTGCTTAGGG
***
75554138 AGATAAGA-TTCGCCGTCTTC-GATCTGCTCCACTACTGCTTAGGG
1 AGATAAGACTT-GGTATCTTCTG-TCTGCTCCACTACTGCTTAGGG
*** *
75554182 AGATAAGA-TCTACCATCTT-TGACCTGCTCCACTACTGCTTAGGG
1 AGATAAGACT-TGGTATCTTCTG-TCTGCTCCACTACTGCTTAGGG
*** * * *
75554226 AGATAAGA-TCTACCACCTTC-GACCTGCTCCATTACTGCTTAGGG
1 AGATAAGACT-TGGTATCTTCTG-TCTGCTCCACTACTGCTTAGGG
** *** * *
75554270 AGATAAGAC-TGGTGGCTTAAATCTGCTTCACTACTGCTTAGGA
1 AGATAAGACTTGGTATCTTCTGTCTGCTCCACTACTGCTTAGGG
***
75554313 AGATAAGA-TTCGCCGTCTTC-GATCTGCTCCACTACTGCTTAGGG
1 AGATAAGACTT-GGTATCTTCTG-TCTGCTCCACTACTGCTTAGGG
*** *
75554357 AGATAAGA-TCTACCATCTT-TGACCTGCTCCACTACTGCTTAGGG
1 AGATAAGACT-TGGTATCTTCTG-TCTGCTCCACTACTGCTTAGGG
* *** *
75554401 AGATAGGA-TCTACCATCTTC-GACCTGCTCCACTACTGCTTAGGG
1 AGATAAGACT-TGGTATCTTCTG-TCTGCTCCACTACTGCTTAGGG
* ** *** * * *
75554445 AGATAGGAC-TGGTGGCTTAAATCTACTTCACTACTGCTTAGGA
1 AGATAAGACTTGGTATCTTCTGTCTGCTCCACTACTGCTTAGGG
* * * *
75554488 AGATAAGA-TTCGTCGTCTTC-GATCTGCTCCATTACTGCTTTGGG
1 AGATAAGACTTGGT-ATCTTCTG-TCTGCTCCACTACTGCTTAGGG
*** * *
75554532 AGATAAGA-TCTACCATCTT-TGACCTGCACCACTACTGCTTAGGG
1 AGATAAGACT-TGGTATCTTCTG-TCTGCTCCACTACTGCTTAGGG
*
75554576 AGATACGACT
1 AGATAAGACT
75554586 ACTAGCTTCA
Statistics
Matches: 664, Mismatches: 119, Indels: 98
0.75 0.14 0.11
Matches are distributed among these distances:
39 8 0.01
40 62 0.09
42 4 0.01
43 160 0.24
44 422 0.64
45 6 0.01
46 2 0.00
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (44 bp):
AGATAAGACTTGGTATCTTCTGTCTGCTCCACTACTGCTTAGGG
Found at i:75554624 original size:175 final size:175
Alignment explanation
Indices: 75553732--75554580 Score: 1288
Period size: 175 Copynumber: 4.9 Consensus size: 175
75553722 TTTCTTCTGT
* * * * *
75553732 CTGCTTCACTACTGCTTAGGGAGATAATACTTGGT-GC---GATCTGCTCCACTACTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAAGAC-TGGTGGCTTAAATCTGCTTCACTACTGCTTAGGA
*** * * ** *
75553793 AGATAAGATT-GGTTTCTTTTG-TCTACTCCACTACTGCTTAGGGAGATAAGA-CT-TGA--TGT
65 AGATAAGATTCGCCGTC-TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTT
* * * ** *
75553852 GATCTACTCCACTACTGCTTAAGGAGATAAGAAT-TGTCATCTTTGAC
129 GACCTGCTCCACTACTGCTTAGGGAGATAAG-ATCTACCATCTTCGAC
*
75553899 CTGCTCCACTACTGCTTAAGGAGATAAGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
1 CTGCTCCACTACTGCTTAGGGAGATAAGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
* * * *
75553964 GATAAAATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCGTATTTGA
66 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTTGA
75554029 CCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTCGAC
131 CCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTCGAC
*
75554074 CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
1 CTGCTCCACTACTGCTTAGGGAGATAAGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
75554139 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTTGA
66 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTTGA
*
75554204 CCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCACCTTCGAC
131 CCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTCGAC
*
75554249 CTGCTCCATTACTGCTTAGGGAGATAAGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
1 CTGCTCCACTACTGCTTAGGGAGATAAGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
75554314 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTTGA
66 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTTGA
*
75554379 CCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGAC
131 CCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTCGAC
* *
75554424 CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTACTTCACTACTGCTTAGGAA
1 CTGCTCCACTACTGCTTAGGGAGATAAGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
* * *
75554489 GATAAGATTCGTCGTCTTCGATCTGCTCCATTACTGCTTTGGGAGATAAGATCTACCATCTTTGA
66 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTTGA
*
75554554 CCTGCACCACTACTGCTTAGGGAGATA
131 CCTGCTCCACTACTGCTTAGGGAGATA
75554581 CGACTACTAG
Statistics
Matches: 631, Mismatches: 40, Indels: 14
0.92 0.06 0.02
Matches are distributed among these distances:
166 4 0.01
167 29 0.05
170 33 0.05
171 32 0.05
172 2 0.00
174 2 0.00
175 529 0.84
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (175 bp):
CTGCTCCACTACTGCTTAGGGAGATAAGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTTGA
CCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTCGAC
Found at i:75554837 original size:44 final size:45
Alignment explanation
Indices: 75554776--75555110 Score: 172
Period size: 44 Copynumber: 7.5 Consensus size: 45
75554766 CTTCGGTCTA
*
75554776 CTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAACCTGT
1 CTCCACTGTAACTTCAGGGAGATAAGACTTGCATATTCAACCTGT
** **** * * *
75554821 C-CCACTGTAACTTCAGGGAGATAAGGTTTGTGCCTTCGATCT-A
1 CTCCACTGTAACTTCAGGGAGATAAGACTTGCATATTCAACCTGT
** * * ** * *
75554864 CTCTTCTGTAA-TCTCAGGGAGATAAGA-TCT-AAAATTCTTCGGTCT
1 CTCCACTGTAACT-TCAGGGAGATAAGACT-TGCATATTCAAC-CTGT
*
75554909 ACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAACCTGT
1 -CTCCACTGTAACTTCAGGGAGATAAGACTTGCATATTCAACCTGT
** **** * * *
75554955 C-CCACTGTAACTTCAGGGAGATAAGGTTTGTGCCTTCGATCT-A
1 CTCCACTGTAACTTCAGGGAGATAAGACTTGCATATTCAACCTGT
** * * ** * *
75554998 CTCTTCTGTAA-TCTCAGGGAGATAAGA-TCT-AAAATTCTTCGGTCT
1 CTCCACTGTAACT-TCAGGGAGATAAGACT-TGCATATTCAAC-CTGT
*
75555043 ACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAACCTG-
1 -CTCCACTGTAACTTCAGGGAGATAAGACTTGCATATTCAACCTGT
*
75555088 -TCCACTGTAACTTCAGAGAGATA
1 CTCCACTGTAACTTCAGGGAGATA
75555111 GGATCCTTTA
Statistics
Matches: 208, Mismatches: 64, Indels: 38
0.67 0.21 0.12
Matches are distributed among these distances:
43 33 0.16
44 108 0.52
45 2 0.01
46 51 0.25
47 14 0.07
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (45 bp):
CTCCACTGTAACTTCAGGGAGATAAGACTTGCATATTCAACCTGT
Found at i:75554837 original size:90 final size:91
Alignment explanation
Indices: 75554743--75555110 Score: 271
Period size: 90 Copynumber: 4.1 Consensus size: 91
75554733 CGTTGTAATC
75554743 TCAGGGAGATAAGATTAGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGC
1 TCAGGGAGATAAGATTAGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGC
75554808 ATATTCAACCTGTC-CCACTGTAACT
66 ATATTCAACCTGTCTCCACTGTAACT
* * * * ** *
75554833 TCAGGGAGATAAGGTTTG---TGCCTTCGATCTACTCTTCTGTAATCTCAGGGAGATAAGA-TCT
1 TCAGGGAGATAAGATTAGAAAT-TCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACT-T
* * ** * * *
75554894 -AAAATTCTTCGGTCTACTCCACTGTAACC
64 GCATATTCAAC-CTGT-CTCCACTGTAACT
* ** * * * **
75554923 TCAGGGAGATAAGACTT-GCATATTCAAC-CTGT-C-CCACTGTAACTTCAGGGAGATAAGGTTT
1 TCAGGGAGATAAGA-TTAG-AAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTT
**** * * * **
75554984 GTGCCTTCGATCT-ACTCTTCTGTAA-T
64 GCATATTCAACCTGTCTCCACTGTAACT
75555010 CTCAGGGAGATAAGATCTA-AAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTT
1 -TCAGGGAGATAAGAT-TAGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTT
75555074 GCATATTCAACCTG--TCCACTGTAACT
64 GCATATTCAACCTGTCTCCACTGTAACT
*
75555100 TCAGAGAGATA
1 TCAGGGAGATA
75555111 GGATCCTTTA
Statistics
Matches: 204, Mismatches: 54, Indels: 41
0.68 0.18 0.14
Matches are distributed among these distances:
87 15 0.07
88 62 0.30
89 20 0.10
90 95 0.47
91 7 0.03
92 2 0.01
93 2 0.01
94 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (91 bp):
TCAGGGAGATAAGATTAGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGC
ATATTCAACCTGTCTCCACTGTAACT
Found at i:75554874 original size:134 final size:134
Alignment explanation
Indices: 75554736--75555110 Score: 718
Period size: 134 Copynumber: 2.8 Consensus size: 134
75554726 TCTGCTCCGT
75554736 TGTAATCTCAGGGAGATAAGAT-TAGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATA
1 TGTAATCTCAGGGAGATAAGATCTA-AAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATA
75554800 AGACTTGCATATTCAACCTGTCCCACTGTAACTTCAGGGAGATAAGGTTTGTGCCTTCGATCTAC
65 AGACTTGCATATTCAACCTGTCCCACTGTAACTTCAGGGAGATAAGGTTTGTGCCTTCGATCTAC
75554865 TCTTC
130 TCTTC
75554870 TGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAA
1 TGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAA
75554935 GACTTGCATATTCAACCTGTCCCACTGTAACTTCAGGGAGATAAGGTTTGTGCCTTCGATCTACT
66 GACTTGCATATTCAACCTGTCCCACTGTAACTTCAGGGAGATAAGGTTTGTGCCTTCGATCTACT
75555000 CTTC
131 CTTC
75555004 TGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAA
1 TGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAA
*
75555069 GACTTGCATATTCAACCTGT-CCACTGTAACTTCAGAGAGATA
66 GACTTGCATATTCAACCTGTCCCACTGTAACTTCAGGGAGATA
75555111 GGATCCTTTA
Statistics
Matches: 239, Mismatches: 1, Indels: 3
0.98 0.00 0.01
Matches are distributed among these distances:
133 21 0.09
134 216 0.90
135 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (134 bp):
TGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAA
GACTTGCATATTCAACCTGTCCCACTGTAACTTCAGGGAGATAAGGTTTGTGCCTTCGATCTACT
CTTC
Found at i:75555858 original size:23 final size:23
Alignment explanation
Indices: 75555828--75555871 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
75555818 CAAAAATCCA
*
75555828 AAGAAAAAGTTTAAATTTAGATT
1 AAGAAAAAGTCTAAATTTAGATT
75555851 AAGAAAAAGTCTAAATTTAGA
1 AAGAAAAAGTCTAAATTTAGA
75555872 CTATTCCTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.55, C:0.02, G:0.14, T:0.30
Consensus pattern (23 bp):
AAGAAAAAGTCTAAATTTAGATT
Found at i:75556510 original size:7 final size:7
Alignment explanation
Indices: 75556498--75556551 Score: 67
Period size: 7 Copynumber: 8.0 Consensus size: 7
75556488 TTAGCCTCTC
75556498 CATTTTT
1 CATTTTT
75556505 CATTTTT
1 CATTTTT
75556512 CA-TTTT
1 CATTTTT
*
75556518 CTTTTTT
1 CATTTTT
*
75556525 CAATTTT
1 CATTTTT
*
75556532 CA-TTCT
1 CATTTTT
75556538 CATTTTT
1 CATTTTT
75556545 CATTTTT
1 CATTTTT
75556552 TCAGAGTGCC
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
6 10 0.25
7 30 0.75
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.69
Consensus pattern (7 bp):
CATTTTT
Found at i:75556523 original size:20 final size:20
Alignment explanation
Indices: 75556498--75556551 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
75556488 TTAGCCTCTC
*
75556498 CATTTTTCATTTTTCATTTT
1 CATTTTTCATTTTTCATTCT
* *
75556518 CTTTTTTCAATTTTCATTCT
1 CATTTTTCATTTTTCATTCT
75556538 CATTTTTCATTTTT
1 CATTTTTCATTTTT
75556552 TCAGAGTGCC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.69
Consensus pattern (20 bp):
CATTTTTCATTTTTCATTCT
Found at i:75558279 original size:26 final size:28
Alignment explanation
Indices: 75558250--75558305 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 28
75558240 TGAAATAATC
75558250 AGAAATAATTAT-TCAAAAA-GAATG-AA
1 AGAAAT-ATTATCTCAAAAAGGAATGCAA
*
75558276 AG-AATATTTTCTCAAAAAGGAATGCAA
1 AGAAATATTATCTCAAAAAGGAATGCAA
75558303 AGA
1 AGA
75558306 TGTATTTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
24 4 0.16
25 10 0.40
26 7 0.28
27 4 0.16
ACGTcount: A:0.55, C:0.07, G:0.14, T:0.23
Consensus pattern (28 bp):
AGAAATATTATCTCAAAAAGGAATGCAA
Found at i:75561780 original size:12 final size:11
Alignment explanation
Indices: 75561765--75561807 Score: 52
Period size: 12 Copynumber: 3.8 Consensus size: 11
75561755 AGTAAATAAA
*
75561765 AATAATGATGAT
1 AATAATAATG-T
75561777 AATAATAATGT
1 AATAATAATGT
75561788 AAT-ATAATAGT
1 AATAATAAT-GT
75561799 AATAATAAT
1 AATAATAAT
75561808 ATTAAAATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
10 5 0.18
11 9 0.32
12 14 0.50
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (11 bp):
AATAATAATGT
Found at i:75561800 original size:11 final size:12
Alignment explanation
Indices: 75561776--75561818 Score: 56
Period size: 11 Copynumber: 3.8 Consensus size: 12
75561766 ATAATGATGA
75561776 TAATAATAAT-G
1 TAATAATAATAG
75561787 TAAT-ATAATAG
1 TAATAATAATAG
*
75561798 TAATAATAATAT
1 TAATAATAATAG
75561810 TAA-AATAAT
1 TAATAATAAT
75561819 TAATTTAATG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
10 5 0.17
11 15 0.52
12 9 0.31
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (12 bp):
TAATAATAATAG
Found at i:75564824 original size:18 final size:18
Alignment explanation
Indices: 75564781--75564824 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
75564771 AAATATAATA
*
75564781 AAAAG-AAATCAACAAAT
1 AAAAGTAAATAAACAAAT
75564798 AAAAGTAAATAAACAAAT
1 AAAAGTAAATAAACAAAT
*
75564816 AAAATTAAA
1 AAAAGTAAA
75564825 GTACTTTAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 5 0.21
18 19 0.79
ACGTcount: A:0.73, C:0.07, G:0.05, T:0.16
Consensus pattern (18 bp):
AAAAGTAAATAAACAAAT
Found at i:75565102 original size:24 final size:23
Alignment explanation
Indices: 75565075--75565119 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
75565065 ATTTAAGAAG
* *
75565075 AGATATAGATATATATACATAATA
1 AGATATAAAGATATATA-ATAATA
75565099 AGATATAAAGATATATAATAA
1 AGATATAAAGATATATAATAA
75565120 GATATGTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.58, C:0.02, G:0.09, T:0.31
Consensus pattern (23 bp):
AGATATAAAGATATATAATAATA
Found at i:75565104 original size:18 final size:18
Alignment explanation
Indices: 75565081--75565129 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 18
75565071 GAAGAGATAT
75565081 AGATATATATACATAATA
1 AGATATATATACATAATA
* *
75565099 AGATATAAAGATATATAATA
1 AGATAT--ATATACATAATA
*
75565119 AGATATGTATA
1 AGATATATATA
75565130 TAAATAGTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
18 9 0.36
20 16 0.64
ACGTcount: A:0.55, C:0.02, G:0.10, T:0.33
Consensus pattern (18 bp):
AGATATATATACATAATA
Found at i:75565221 original size:14 final size:14
Alignment explanation
Indices: 75565188--75565214 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
75565178 AATAAGCAAA
75565188 AATAATAATATAAC
1 AATAATAATATAAC
75565202 AATAATAATATAA
1 AATAATAATATAA
75565215 GGCTAATGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.30
Consensus pattern (14 bp):
AATAATAATATAAC
Found at i:75565829 original size:6 final size:6
Alignment explanation
Indices: 75565818--75565853 Score: 54
Period size: 6 Copynumber: 5.7 Consensus size: 6
75565808 AAATGAACAA
75565818 AAAAAT AAAAAT AAAAAT AAAAAAT AAAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT -AAAAAT -AAAAAT AAAA
75565854 GGGGTAAGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 16 0.55
7 13 0.45
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:75565834 original size:7 final size:7
Alignment explanation
Indices: 75565817--75565853 Score: 60
Period size: 7 Copynumber: 5.6 Consensus size: 7
75565807 TAAATGAACA
75565817 AAAAAAT
1 AAAAAAT
75565824 -AAAAAT
1 AAAAAAT
75565830 -AAAAAT
1 AAAAAAT
75565836 AAAAAAT
1 AAAAAAT
75565843 AAAAAAT
1 AAAAAAT
75565850 AAAA
1 AAAA
75565854 GGGGTAAGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 12 0.41
7 17 0.59
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (7 bp):
AAAAAAT
Found at i:75565839 original size:20 final size:20
Alignment explanation
Indices: 75565817--75565853 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
75565807 TAAATGAACA
75565817 AAAAAAT-AAAAATAAAAAT
1 AAAAAATAAAAAATAAAAAT
75565836 AAAAAATAAAAAATAAAA
1 AAAAAATAAAAAATAAAA
75565854 GGGGTAAGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (20 bp):
AAAAAATAAAAAATAAAAAT
Found at i:75565840 original size:13 final size:13
Alignment explanation
Indices: 75565817--75565853 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
75565807 TAAATGAACA
75565817 AAAAAATAAAAAT
1 AAAAAATAAAAAT
75565830 -AAAAATAAAAAAT
1 AAAAAAT-AAAAAT
75565843 AAAAAATAAAA
1 AAAAAATAAAA
75565854 GGGGTAAGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 6 0.27
13 10 0.45
14 6 0.27
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (13 bp):
AAAAAATAAAAAT
Done.