Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 223 of 235
Found at i:75578564 original size:21 final size:21
Alignment explanation
Indices: 75578538--75578578 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
75578528 AGACGAGCAA
* *
75578538 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
75578559 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
75578579 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:75580517 original size:16 final size:16
Alignment explanation
Indices: 75580484--75580517 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
75580474 GGAGATTGTT
* *
75580484 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
75580500 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
75580516 AA
1 AA
75580518 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:75582489 original size:36 final size:36
Alignment explanation
Indices: 75582442--75582513 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
75582432 CTTGGCTTTA
75582442 GACACCAAAACCAACACTTAATTTAGCTGCATTTGT
1 GACACCAAAACCAACACTTAATTTAGCTGCATTTGT
* * *
75582478 GACACCAAAACCAAGACTTAGTTTCGCTGCATTTGT
1 GACACCAAAACCAACACTTAATTTAGCTGCATTTGT
75582514 ACCACGACAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (36 bp):
GACACCAAAACCAACACTTAATTTAGCTGCATTTGT
Found at i:75585281 original size:21 final size:22
Alignment explanation
Indices: 75585255--75585297 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
75585245 GGGCCAGGGT
75585255 ATTGGGTTTAG-GTTTAGGCTA
1 ATTGGGTTTAGTGTTTAGGCTA
*
75585276 ATTGGGTTTAGTGTTTGGGCTA
1 ATTGGGTTTAGTGTTTAGGCTA
75585298 GTTTAATTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.16, C:0.05, G:0.35, T:0.44
Consensus pattern (22 bp):
ATTGGGTTTAGTGTTTAGGCTA
Found at i:75586266 original size:22 final size:22
Alignment explanation
Indices: 75586236--75586291 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
75586226 AAGATTTACC
75586236 AAACTTATATGAAAAGCTTAATAA
1 AAAC-TATATGAAAAGC-TAATAA
* * *
75586260 AAA-TATATTAAACGCTATTAA
1 AAACTATATGAAAAGCTAATAA
75586281 AAACTATATGA
1 AAACTATATGA
75586292 GAAATTCTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
21 8 0.30
22 16 0.59
24 3 0.11
ACGTcount: A:0.54, C:0.09, G:0.07, T:0.30
Consensus pattern (22 bp):
AAACTATATGAAAAGCTAATAA
Found at i:75589671 original size:4 final size:4
Alignment explanation
Indices: 75589664--75589702 Score: 53
Period size: 4 Copynumber: 10.0 Consensus size: 4
75589654 TATGAGAAAG
* *
75589664 AATA AATA AAT- AATA AATA AATA AATA AGTA GATA AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA
75589703 TAAAAGAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
3 3 0.10
4 27 0.90
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (4 bp):
AATA
Found at i:75589684 original size:15 final size:16
Alignment explanation
Indices: 75589664--75589702 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
75589654 TATGAGAAAG
75589664 AATAAATAAATAA-TA
1 AATAAATAAATAAGTA
75589679 AATAAATAAATAAGTA
1 AATAAATAAATAAGTA
*
75589695 GATAAATA
1 AATAAATA
75589703 TAAAAGAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 13 0.59
16 9 0.41
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (16 bp):
AATAAATAAATAAGTA
Found at i:75591111 original size:45 final size:45
Alignment explanation
Indices: 75591006--75591357 Score: 352
Period size: 45 Copynumber: 7.9 Consensus size: 45
75590996 GGATTTATTG
* ** * * * *
75591006 CTTCAATCTACTCCACTGTAACTTTAGGGAGATTAGACTTG-TAG
1 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCTAT
* * * *
75591050 CTTTAATCTGCTCCACTGCTACTTCAAGGAGATAAGATTTGCTAT
1 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCTAT
* * **
75591095 CTTCAAT-TCACTCCACTACAACTTTAGGGAGATAAGATTTATTAT
1 CTTCAATCT-GCTCCACTACAACTTCAGGGAGATAAGATTTGCTAT
* * * * *
75591140 CTTCCATCTGCTCCACTGCTACTTCAGGAAAATAAGATTTGCTAT
1 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCTAT
*
75591185 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTACTAT
1 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCTAT
* * *
75591230 CTTCAATCTGCTCCGCTACAACTTTAGGGAAATAAGATTTGCTAT
1 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCTAT
* * * * **
75591275 CTTCAACCTACTCCAATGCAACTTCAGGGAGATAAGATTTG-TGG
1 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCTAT
* * **
75591319 CTT-AAACTTGCTCCACTGCAACTTCAGAAAGATAAGATT
1 CTTCAATC-TGCTCCACTACAACTTCAGGGAGATAAGATT
75591358 CGTCATGCTG
Statistics
Matches: 254, Mismatches: 50, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
43 3 0.01
44 65 0.26
45 185 0.73
46 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (45 bp):
CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCTAT
Found at i:75591178 original size:90 final size:89
Alignment explanation
Indices: 75591006--75591397 Score: 389
Period size: 90 Copynumber: 4.3 Consensus size: 89
75590996 GGATTTATTG
** * * * * * *
75591006 CTTCAATCTACTCCACTGTAACTTTAGGGAGATTAGACTT-GTAGCTTTAATCTGCTCCACTGCT
1 CTTCAATCTACTCCACTACAACTTCAGGGAGATAAGATTTACTATCTTCAATCTGCTCCACTGCT
*
75591070 ACTTCAAGGAGATAAGATTTGCTAT
66 ACTTC-AGGAAATAAGATTTGCTAT
* * *
75591095 CTTCAAT-TCACTCCACTACAACTTTAGGGAGATAAGATTTATTATCTTCCATCTGCTCCACTGC
1 CTTCAATCT-ACTCCACTACAACTTCAGGGAGATAAGATTTACTATCTTCAATCTGCTCCACTGC
75591159 TACTTCAGGAAAATAAGATTTGCTAT
65 TACTTCAGG-AAATAAGATTTGCTAT
* * * *
75591185 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTACTATCTTCAATCTGCTCCGCTACA
1 CTTCAATCTACTCCACTACAACTTCAGGGAGATAAGATTTACTATCTTCAATCTGCTCCACTGCT
*
75591250 ACTTTAGGGAAATAAGATTTGCTAT
66 ACTTCA-GGAAATAAGATTTGCTAT
* * * * ** *
75591275 CTTCAACCTACTCCAATGCAACTTCAGGGAGATAAGATTT-GTGGCTT-AAACTTGCTCCACTGC
1 CTTCAATCTACTCCACTACAACTTCAGGGAGATAAGATTTACTATCTTCAATC-TGCTCCACTGC
* *
75591338 AACTTCAGAAAGATAAGATTCGTCATGCTGA-
65 TACTTCAGGAA-ATAAGA-T--T--TGCT-AT
* *
75591369 CTTCAATCCACCCCACTACAACTTCAGGG
1 CTTCAATCTACTCCACTACAACTTCAGGG
75591398 GTATAGGATT
Statistics
Matches: 256, Mismatches: 34, Indels: 21
0.82 0.11 0.07
Matches are distributed among these distances:
88 7 0.03
89 62 0.24
90 154 0.60
91 3 0.01
92 1 0.00
94 28 0.11
95 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.31
Consensus pattern (89 bp):
CTTCAATCTACTCCACTACAACTTCAGGGAGATAAGATTTACTATCTTCAATCTGCTCCACTGCT
ACTTCAGGAAATAAGATTTGCTAT
Found at i:75591220 original size:135 final size:133
Alignment explanation
Indices: 75591006--75591357 Score: 391
Period size: 135 Copynumber: 2.6 Consensus size: 133
75590996 GGATTTATTG
* * * * * * * * *
75591006 CTTCAATCTACTCCACTGTAACTTTAGGGAGATTAGACTTGTAGCTTTAATCTGCTCCACTGCTA
1 CTTCAACCTACTCCAATGCAACTTCAGGAAAATAAGATTTGTAGC-TTAATCTGCTCCACTGCAA
* * *
75591071 CTTCAAGGAGATAAGATTTGCTATCTTCAAT-TCACTCCACTACAACTTTAGGGAGATAAGATTT
65 CTTCAGGGAGATAAGATTTACTATCTTCAATCT-ACTCCACTACAACTTTAGGGAAATAAGATTT
*
75591135 ATTAT
129 ACTAT
* * * * * * *
75591140 CTTCCATCTGCTCCACTGCTACTTCAGGAAAATAAGATTTGCTATCTTCAATCTGCTCCACTACA
1 CTTCAACCTACTCCAATGCAACTTCAGGAAAATAAGATTTG-TAGCTT-AATCTGCTCCACTGCA
* *
75591205 ACTTCAGGGAGATAAGATTTACTATCTTCAATCTGCTCCGCTACAACTTTAGGGAAATAAGATTT
64 ACTTCAGGGAGATAAGATTTACTATCTTCAATCTACTCCACTACAACTTTAGGGAAATAAGATTT
*
75591270 GCTAT
129 ACTAT
* * * *
75591275 CTTCAACCTACTCCAATGCAACTTCAGGGAGATAAGATTTGTGGCTTAAACTTGCTCCACTGCAA
1 CTTCAACCTACTCCAATGCAACTTCAGGAAAATAAGATTTGTAGCTTAATC-TGCTCCACTGCAA
**
75591340 CTTCAGAAAGATAAGATT
65 CTTCAGGGAGATAAGATT
75591358 CGTCATGCTG
Statistics
Matches: 182, Mismatches: 32, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
133 3 0.02
134 66 0.36
135 112 0.62
136 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (133 bp):
CTTCAACCTACTCCAATGCAACTTCAGGAAAATAAGATTTGTAGCTTAATCTGCTCCACTGCAAC
TTCAGGGAGATAAGATTTACTATCTTCAATCTACTCCACTACAACTTTAGGGAAATAAGATTTAC
TAT
Found at i:75598729 original size:169 final size:169
Alignment explanation
Indices: 75598447--75598787 Score: 646
Period size: 169 Copynumber: 2.0 Consensus size: 169
75598437 TTTTATTGCC
75598447 ACCTCTCTCCATCTTTGAACGTACTACTTAAAGCTTTCACTTGGCTTCTTTTCCATGTTTTGCAA
1 ACCTCTCTCCATCTTTGAACGTACTACTTAAAGCTTTCACTTGGCTTCTTTTCCATGTTTTGCAA
*
75598512 CGTAATTCTATCAGGTGTCATATTGGTCACATGGCTATATTGTTTCATTAAAGCCTGTGTCAGGT
66 CGTAATTCTATCAGGTGTCATATTGGTCACATGGCTATATTATTTCATTAAAGCCTGTGTCAGGT
75598577 CTTTCCATGAGTTGATTTTAGCACGGCTTAGTTAGTTGT
131 CTTTCCATGAGTTGATTTTAGCACGGCTTAGTTAGTTGT
*
75598616 ACCTCTCTCCATCTTTGAACGTACTACTTAAAGCTTTCACTTGGCTTTTTTTCCATGTTTTGCAA
1 ACCTCTCTCCATCTTTGAACGTACTACTTAAAGCTTTCACTTGGCTTCTTTTCCATGTTTTGCAA
*
75598681 CGTAATTCTATCAGGTGTCATATTGGTCACATGGCTGTATTATTTCATTAAAGCCTGTGTCAGGT
66 CGTAATTCTATCAGGTGTCATATTGGTCACATGGCTATATTATTTCATTAAAGCCTGTGTCAGGT
*
75598746 CTTTCCATGAGTTGATTTTAGCATGGCTTAGTTAGTTGT
131 CTTTCCATGAGTTGATTTTAGCACGGCTTAGTTAGTTGT
75598785 ACC
1 ACC
75598788 ACTTGGTGAC
Statistics
Matches: 168, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
169 168 1.00
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.41
Consensus pattern (169 bp):
ACCTCTCTCCATCTTTGAACGTACTACTTAAAGCTTTCACTTGGCTTCTTTTCCATGTTTTGCAA
CGTAATTCTATCAGGTGTCATATTGGTCACATGGCTATATTATTTCATTAAAGCCTGTGTCAGGT
CTTTCCATGAGTTGATTTTAGCACGGCTTAGTTAGTTGT
Found at i:75604268 original size:10 final size:11
Alignment explanation
Indices: 75604248--75604273 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
75604238 TTTAAGAGGT
75604248 AAACAAAAAAA
1 AAACAAAAAAA
75604259 AAACAAAAAAA
1 AAACAAAAAAA
75604270 AAAC
1 AAAC
75604274 TTCGATCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (11 bp):
AAACAAAAAAA
Found at i:75605363 original size:20 final size:22
Alignment explanation
Indices: 75605324--75605373 Score: 68
Period size: 20 Copynumber: 2.3 Consensus size: 22
75605314 AATAAAATAT
75605324 ATAAAATATTAATTTTTTAAAAA
1 ATAAAATATTAA-TTTTTAAAAA
*
75605347 ATAAAATATT-A-TTTTAAATA
1 ATAAAATATTAATTTTTAAAAA
75605367 ATAAAAT
1 ATAAAAT
75605374 GGGTTTTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 15 0.58
22 1 0.04
23 10 0.38
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
ATAAAATATTAATTTTTAAAAA
Found at i:75608654 original size:20 final size:20
Alignment explanation
Indices: 75608629--75608670 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
75608619 ATTTAAATTT
*
75608629 ATTTAAAATAAAAATATAAA
1 ATTTAAAATAAAAATAAAAA
*
75608649 ATTTAAATTAAAAATAAAAA
1 ATTTAAAATAAAAATAAAAA
75608669 AT
1 AT
75608671 AAAAAAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (20 bp):
ATTTAAAATAAAAATAAAAA
Found at i:75608676 original size:27 final size:26
Alignment explanation
Indices: 75608633--75608683 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
75608623 AAATTTATTT
* *
75608633 AAAATAAAAATATAAAATTTAAATTA
1 AAAATAAAAATAAAAAAATTAAATTA
75608659 AAAATAAAAAATAAAAAAATTAAAT
1 AAAAT-AAAAATAAAAAAATTAAAT
75608684 ATTTTTATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 5 0.23
27 17 0.77
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (26 bp):
AAAATAAAAATAAAAAAATTAAATTA
Found at i:75609034 original size:15 final size:17
Alignment explanation
Indices: 75609005--75609038 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
75608995 CTGTTTTGAA
75609005 TTTTTAGAATATAAAAT
1 TTTTTAGAATATAAAAT
75609022 TTTTTA-AAT-TAAAAT
1 TTTTTAGAATATAAAAT
75609037 TT
1 TT
75609039 ATAAATAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
16 3 0.18
17 6 0.35
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
TTTTTAGAATATAAAAT
Found at i:75611324 original size:33 final size:33
Alignment explanation
Indices: 75611269--75611427 Score: 101
Period size: 33 Copynumber: 4.8 Consensus size: 33
75611259 ACGTTCATAG
* * *
75611269 TGCCATAACATAATTATAGTCTTATCATTAGAA
1 TGCCATAACCTAACTATGGTCTTATCATTAGAA
* *
75611302 TGCCATAACCTAGCTATGGTCTTA-CATGTATACA
1 TGCCATAACCTAACTATGGTCTTATCAT-TAGA-A
*** *
75611336 CTGCCATGGTCTAACCATGGTCTTATGTCCATT---A
1 -TGCCATAACCTAACTATGGTCTTA--T-CATTAGAA
**** *
75611370 TGCCATAACCCGGTTATGGTCTTATCATCAGAA
1 TGCCATAACCTAACTATGGTCTTATCATTAGAA
*
75611403 TGCCATAGCCTAACTATGGTCTTAT
1 TGCCATAACCTAACTATGGTCTTAT
75611428 AATTTCATAG
Statistics
Matches: 92, Mismatches: 24, Indels: 20
0.68 0.18 0.15
Matches are distributed among these distances:
30 3 0.03
31 1 0.01
32 3 0.03
33 60 0.65
34 2 0.02
35 19 0.21
38 1 0.01
39 3 0.03
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (33 bp):
TGCCATAACCTAACTATGGTCTTATCATTAGAA
Found at i:75616253 original size:15 final size:15
Alignment explanation
Indices: 75616235--75616281 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
75616225 AAGTTTTTTA
75616235 ATTTTATTATTAAAC
1 ATTTTATTATTAAAC
* *
75616250 ATTTTACTCTTAAAC
1 ATTTTATTATTAAAC
*
75616265 ATTTTCCTTATTAAAC
1 ATTTT-ATTATTAAAC
75616281 A
1 A
75616282 CTTGTCCTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
15 18 0.69
16 8 0.31
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.49
Consensus pattern (15 bp):
ATTTTATTATTAAAC
Found at i:75616280 original size:16 final size:16
Alignment explanation
Indices: 75616241--75616294 Score: 58
Period size: 15 Copynumber: 3.4 Consensus size: 16
75616231 TTTAATTTTA
*
75616241 TTATTAAACATTTTAC
1 TTATTAAACATTTTCC
*
75616257 -TCTTAAACATTTTCC
1 TTATTAAACATTTTCC
*
75616272 TTATTAAACACTTGTCC
1 TTATTAAACA-TTTTCC
75616289 TT-TTAA
1 TTATTAA
75616295 TTTTATTGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
15 13 0.41
16 12 0.38
17 7 0.22
ACGTcount: A:0.31, C:0.19, G:0.02, T:0.48
Consensus pattern (16 bp):
TTATTAAACATTTTCC
Found at i:75618076 original size:50 final size:50
Alignment explanation
Indices: 75617952--75618142 Score: 204
Period size: 50 Copynumber: 3.7 Consensus size: 50
75617942 GATCATTACA
* ** * *
75617952 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCAT-CTCGG
* * *
75618003 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
75618053 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATGATCTCAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC--GG
* *
75618108 ATGCCAATGCCATTTCCTAGACATGGTCTTACATG
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATG
75618143 AGATCTCTTT
Statistics
Matches: 118, Mismatches: 15, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
49 1 0.01
50 46 0.39
51 33 0.28
53 5 0.04
55 2 0.02
56 31 0.26
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:75618522 original size:30 final size:30
Alignment explanation
Indices: 75618487--75618544 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
75618477 CCTCGACTCT
*
75618487 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
75618517 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
75618545 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:75619855 original size:19 final size:20
Alignment explanation
Indices: 75619826--75619864 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
75619816 TTCAAAGTTT
*
75619826 CCATAATAGGTATCGATACC
1 CCATAATAGGTACCGATACC
75619846 CCAT-ATAGGTACCGATACC
1 CCATAATAGGTACCGATACC
75619865 ATTTTAAGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.23
Consensus pattern (20 bp):
CCATAATAGGTACCGATACC
Found at i:75622619 original size:27 final size:26
Alignment explanation
Indices: 75622581--75622635 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
75622571 AGAAATTTGC
*
75622581 TAAGCAACTC-AATGTTTAGTACACATA
1 TAAGCAACTCAAATGCTTA--ACACATA
*
75622608 TAAGCACCTCAAATGCTTAACACATA
1 TAAGCAACTCAAATGCTTAACACATA
75622634 TA
1 TA
75622636 CATGTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 9 0.36
27 9 0.36
28 7 0.28
ACGTcount: A:0.42, C:0.22, G:0.09, T:0.27
Consensus pattern (26 bp):
TAAGCAACTCAAATGCTTAACACATA
Found at i:75624500 original size:16 final size:16
Alignment explanation
Indices: 75624479--75624546 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
75624469 TTTGGTTCGC
75624479 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
75624495 TGTATTGAATTAGATG
1 TGTATTGGATTAGAGG
75624511 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
75624527 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
75624543 TGTA
1 TGTA
75624547 ATAGCTAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.26, C:0.00, G:0.34, T:0.40
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:75624611 original size:44 final size:45
Alignment explanation
Indices: 75624527--75624617 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
75624517 GGATTAGAGG
* * *
75624527 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
75624572 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
75624616 TG
1 TG
75624618 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:75624799 original size:16 final size:16
Alignment explanation
Indices: 75624762--75624816 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
75624752 TTAATCATAT
*
75624762 TTAAACATA-ATTATAA
1 TTAAA-ATATATTTTAA
75624778 TT-AAATATATTTTAA
1 TTAAAATATATTTTAA
75624793 TTAAAATATATAATTTAA
1 TTAAAATATAT--TTTAA
75624811 -TAAAAT
1 TTAAAAT
75624817 TCTTATAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 3 0.09
15 10 0.29
16 10 0.29
17 6 0.18
18 5 0.15
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
TTAAAATATATTTTAA
Found at i:75624809 original size:18 final size:18
Alignment explanation
Indices: 75624768--75624816 Score: 61
Period size: 16 Copynumber: 2.9 Consensus size: 18
75624758 ATATTTAAAC
75624768 ATAATTATAATT-AAATAT
1 ATAATT-TAATTAAAATAT
75624786 AT--TTTAATTAAAATAT
1 ATAATTTAATTAAAATAT
75624802 ATAATTTAA-TAAAAT
1 ATAATTTAATTAAAAT
75624817 TCTTATAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 5 0.18
16 10 0.36
17 6 0.21
18 7 0.25
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
ATAATTTAATTAAAATAT
Found at i:75624953 original size:156 final size:156
Alignment explanation
Indices: 75624669--75624977 Score: 591
Period size: 156 Copynumber: 2.0 Consensus size: 156
75624659 TAGAATACCC
* *
75624669 TTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
75624734 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
75624799 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
75624825 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
*
75624890 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
75624955 TATATAATTTAATAAAATTCTTA
131 TATATAATTTAATAAAATTCTTA
75624978 ACAATTAATA
Statistics
Matches: 150, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
156 150 1.00
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.47
Consensus pattern (156 bp):
TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
TATATAATTTAATAAAATTCTTATAA
Found at i:75624959 original size:18 final size:17
Alignment explanation
Indices: 75624938--75624972 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
75624928 TTATTATTAA
*
75624938 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
75624956 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
75624973 TCTTAACAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:75626969 original size:33 final size:33
Alignment explanation
Indices: 75626930--75627039 Score: 136
Period size: 33 Copynumber: 3.3 Consensus size: 33
75626920 ATTATAAAGC
75626930 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
* *
75626963 ATGTATAATTGACCTAAAATTACTTGTTGGTTT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
* *
75626996 AATGT-T-ATTTACCCTAAAA-AACATTGTTGGTGT
1 -ATGTATAATTGA-CCTAAAATTA-ATTGTTGGTGT
75627029 ATGTATAATTG
1 ATGTATAATTG
75627040 TTGGTTTAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
32 9 0.14
33 49 0.75
34 7 0.11
ACGTcount: A:0.33, C:0.08, G:0.16, T:0.43
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGTGT
Found at i:75627062 original size:51 final size:51
Alignment explanation
Indices: 75626986--75627547 Score: 1117
Period size: 51 Copynumber: 11.0 Consensus size: 51
75626976 CTAAAATTAC
75626986 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
75627037 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
75627088 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
75627139 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
75627190 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
75627241 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
75627292 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
75627343 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
75627394 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
75627445 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
75627496 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATG-ATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
75627546 TT
1 TT
75627548 TTTACGTATA
Statistics
Matches: 511, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
50 6 0.01
51 505 0.99
ACGTcount: A:0.29, C:0.08, G:0.18, T:0.45
Consensus pattern (51 bp):
TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
Found at i:75627721 original size:86 final size:86
Alignment explanation
Indices: 75627614--75627794 Score: 355
Period size: 86 Copynumber: 2.1 Consensus size: 86
75627604 TTCTCTCCAC
75627614 ATAA-AATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
1 ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
75627678 TTAATATTAAAGATAAAAATT
66 TTAATATTAAAGATAAAAATT
75627699 ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
1 ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
75627764 TTAATATTAAAGATAAAAATT
66 TTAATATTAAAGATAAAAATT
75627785 ATAATAATTA
1 ATAATAATTA
75627795 CAATTATATT
Statistics
Matches: 95, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
85 4 0.04
86 91 0.96
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.40
Consensus pattern (86 bp):
ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
TTAATATTAAAGATAAAAATT
Found at i:75630738 original size:42 final size:42
Alignment explanation
Indices: 75630682--75630772 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
75630672 ACTTAAGTTC
75630682 TTTAT-CTTCACTTACCAATGTTCATGCCAAGTTTCTTTGTT
1 TTTATGCTTCACTTACCAATGTTCATGCCAAGTTTCTTTGTT
75630723 TTTATGCTTCACTTACCAATGTTCATGCCAAGTTTCTTTGTT
1 TTTATGCTTCACTTACCAATGTTCATGCCAAGTTTCTTTGTT
75630765 TTTATGCT
1 TTTATGCT
75630773 AAGTTCACAT
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
41 5 0.10
42 44 0.90
ACGTcount: A:0.19, C:0.21, G:0.11, T:0.49
Consensus pattern (42 bp):
TTTATGCTTCACTTACCAATGTTCATGCCAAGTTTCTTTGTT
Found at i:75630874 original size:3 final size:3
Alignment explanation
Indices: 75630860--75630944 Score: 143
Period size: 3 Copynumber: 28.3 Consensus size: 3
75630850 ATGCTTATTG
* * *
75630860 CAT CAC CAT CAT CAT CAT CAT CAT CAT CAC CAT CAC CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
75630908 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
75630945 TTTTTATTCT
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 76 1.00
ACGTcount: A:0.33, C:0.38, G:0.00, T:0.29
Consensus pattern (3 bp):
CAT
Found at i:75630957 original size:3 final size:3
Alignment explanation
Indices: 75630951--75630982 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
75630941 CATCTTTTTA
75630951 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
75630983 ACATTACCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:75635119 original size:18 final size:19
Alignment explanation
Indices: 75635066--75635122 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
75635056 AAATTACAAA
*
75635066 AAAAAATCAAAATAATTT-T
1 AAAAATTCAAAAT-ATTTAT
*
75635085 CAAAATTCAAAATATTTAT
1 AAAAATTCAAAATATTTAT
*
75635104 AAAAATTCCAAA-ATTTAT
1 AAAAATTCAAAATATTTAT
75635122 A
1 A
75635123 TTTTTAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
18 11 0.33
19 22 0.67
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAAATTCAAAATATTTAT
Found at i:75638545 original size:12 final size:12
Alignment explanation
Indices: 75638528--75638557 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
75638518 GGTATGCAGA
75638528 ATCTTGTTTTTT
1 ATCTTGTTTTTT
75638540 ATCTTG-TTTTT
1 ATCTTGTTTTTT
75638551 ATCTTGT
1 ATCTTGT
75638558 CCAAATTCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.10, C:0.10, G:0.10, T:0.70
Consensus pattern (12 bp):
ATCTTGTTTTTT
Found at i:75646073 original size:20 final size:20
Alignment explanation
Indices: 75646044--75646081 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
75646034 CGAATATAAT
* *
75646044 AAATATATTTTTTATTTTTA
1 AAATACATTTTTCATTTTTA
75646064 AAATACATTTTTCATTTT
1 AAATACATTTTTCATTTT
75646082 CCCTCCCCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (20 bp):
AAATACATTTTTCATTTTTA
Found at i:75652465 original size:6 final size:6
Alignment explanation
Indices: 75652456--75652484 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
75652446 AAATAAAATT
75652456 CTAAAA CTAAAA CTAAAA CTAAAA CTAAA
1 CTAAAA CTAAAA CTAAAA CTAAAA CTAAA
75652485 GTCTAAAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.66, C:0.17, G:0.00, T:0.17
Consensus pattern (6 bp):
CTAAAA
Found at i:75652606 original size:27 final size:27
Alignment explanation
Indices: 75652568--75652624 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
75652558 TAGTGATTCT
75652568 ATTCGGTTAATTCGGGTAATTTAGTTA
1 ATTCGGTTAATTCGGGTAATTTAGTTA
* *
75652595 ATTCGGTTAATTTGGGTAATTTGGTTA
1 ATTCGGTTAATTCGGGTAATTTAGTTA
75652622 ATT
1 ATT
75652625 TTTAACCAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.05, G:0.23, T:0.47
Consensus pattern (27 bp):
ATTCGGTTAATTCGGGTAATTTAGTTA
Found at i:75652625 original size:9 final size:9
Alignment explanation
Indices: 75652572--75652625 Score: 63
Period size: 9 Copynumber: 6.0 Consensus size: 9
75652562 GATTCTATTC
*
75652572 GGTTAATTC
1 GGTTAATTT
*
75652581 GGGTAATTT
1 GGTTAATTT
* *
75652590 AGTTAATTC
1 GGTTAATTT
75652599 GGTTAATTT
1 GGTTAATTT
*
75652608 GGGTAATTT
1 GGTTAATTT
75652617 GGTTAATTT
1 GGTTAATTT
75652626 TTAACCAAAA
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.24, C:0.04, G:0.24, T:0.48
Consensus pattern (9 bp):
GGTTAATTT
Found at i:75659370 original size:19 final size:18
Alignment explanation
Indices: 75659344--75659383 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
75659334 TTTACTTTGT
* *
75659344 CCCTAAAATTTTTACTTC
1 CCCTAAAAATTGTACTTC
75659362 CCCTAAAAAATTGTACTTC
1 CCCT-AAAAATTGTACTTC
75659381 CCC
1 CCC
75659384 CAAGCCCCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.30, C:0.33, G:0.03, T:0.35
Consensus pattern (18 bp):
CCCTAAAAATTGTACTTC
Found at i:75659469 original size:22 final size:22
Alignment explanation
Indices: 75659444--75659489 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
75659434 ATTTCATATT
*
75659444 TTATCTTTAAAATAACTTTTAA
1 TTATATTTAAAATAACTTTTAA
* **
75659466 TTATATTTAATATATTTTTTAA
1 TTATATTTAAAATAACTTTTAA
75659488 TT
1 TT
75659490 TCAAAATAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (22 bp):
TTATATTTAAAATAACTTTTAA
Found at i:75669171 original size:33 final size:33
Alignment explanation
Indices: 75669134--75669275 Score: 275
Period size: 33 Copynumber: 4.3 Consensus size: 33
75669124 TTAAAACTTG
*
75669134 AATTATACATATACCAACAATTAATTTTAGGTC
1 AATTATACATACACCAACAATTAATTTTAGGTC
75669167 AATTATACATACACCAACAATTAATTTTAGGTC
1 AATTATACATACACCAACAATTAATTTTAGGTC
75669200 AATTATACATACACCAACAATTAATTTTAGGTC
1 AATTATACATACACCAACAATTAATTTTAGGTC
75669233 AATTATACATACACCAACAATTAATTTTAGGTC
1 AATTATACATACACCAACAATTAATTTTAGGTC
75669266 AATTATACAT
1 AATTATACAT
75669276 GCTTTATAAT
Statistics
Matches: 108, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
33 108 1.00
ACGTcount: A:0.43, C:0.17, G:0.06, T:0.35
Consensus pattern (33 bp):
AATTATACATACACCAACAATTAATTTTAGGTC
Found at i:75670268 original size:18 final size:17
Alignment explanation
Indices: 75670240--75670274 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
75670230 ATTATTAAGA
*
75670240 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
75670257 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
75670275 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:75670274 original size:120 final size:120
Alignment explanation
Indices: 75670060--75670531 Score: 926
Period size: 120 Copynumber: 3.9 Consensus size: 120
75670050 TAGTATTCTN
75670060 TTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTT
1 TTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTT
* *
75670125 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAATTTATA
66 ATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
75670180 TTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTT
1 TTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTT
75670245 ATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
66 ATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
75670300 TTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTT
1 TTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTT
75670365 ATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
66 ATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
75670420 TTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTT
1 TTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTT
75670485 ATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
66 ATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
75670532 TAAATATGAT
Statistics
Matches: 350, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 350 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.49
Consensus pattern (120 bp):
TTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTT
ATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
Found at i:75670388 original size:18 final size:17
Alignment explanation
Indices: 75670360--75670394 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
75670350 ATTATTAAGA
*
75670360 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
75670377 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
75670395 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:75670508 original size:18 final size:17
Alignment explanation
Indices: 75670480--75670514 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
75670470 ATTATTAAGA
*
75670480 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
75670497 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
75670515 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:75670728 original size:44 final size:45
Alignment explanation
Indices: 75670679--75670769 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
75670669 ACCTCTATTC
* * *
75670679 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
75670723 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
75670768 CA
1 CA
75670770 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:75670771 original size:16 final size:16
Alignment explanation
Indices: 75670750--75670818 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
75670740 GATTAGCTAT
75670750 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
75670766 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
75670783 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
75670799 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
75670815 TACA
1 TACA
75670819 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:75670792 original size:33 final size:32
Alignment explanation
Indices: 75670750--75670818 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
75670740 GATTAGCTAT
75670750 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
75670783 TACACCTCTAATCCAATACGCCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
75670815 TACA
1 TACA
75670819 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:75672884 original size:16 final size:16
Alignment explanation
Indices: 75672865--75673164 Score: 75
Period size: 16 Copynumber: 19.6 Consensus size: 16
75672855 TAATATTAAT
*
75672865 TAAGTTGTGTATTATG
1 TAAGTTATGTATTATG
75672881 TAAGTTATGTATTATG
1 TAAGTTATGTATTATG
75672897 T-A-TTATGTATGTTATG
1 TAAGTTATGTA--TTATG
*
75672913 T-A--TA-ATATTAAT-
1 TAAGTTATGTATT-ATG
*
75672925 TAAGTTGTGTATTATG
1 TAAGTTATGTATTATG
*
75672941 T-A-TTATGTATTATA
1 TAAGTTATGTATTATG
*
75672955 TCTA-TTATGTATATTAT-
1 T-AAGTTATG--TATTATG
* *
75672972 TAA-TTAAG--TTGTG
1 TAAGTTATGTATTATG
75672985 T-A-TTATGTATTATG
1 TAAGTTATGTATTATG
* *
75672999 TATGTTATGTATAATATTAAT
1 TAAGTTATGTAT--TA-T--G
* *
75673020 TAAGTTGTGTATAATG
1 TAAGTTATGTATTATG
75673036 TAAGTTATGTA--A-G
1 TAAGTTATGTATTATG
75673049 -AA---ATGTATTATG
1 TAAGTTATGTATTATG
* *
75673061 TAAGTTGTGTATAATG
1 TAAGTTATGTATTATG
* *
75673077 TTAGTTAT-CA--A--
1 TAAGTTATGTATTATG
*
75673088 --AGTTATGTACTATG
1 TAAGTTATGTATTATG
*
75673102 TAAGTTATTTAAGTTATG
1 TAAGTTATGT-A-TTATG
*
75673120 TAAGTTGTGTATTATG
1 TAAGTTATGTATTATG
75673136 TAAGTTATTATGTTATTATG
1 TAAG---TTATG-TATTATG
75673156 TAAGTTATG
1 TAAGTTATG
75673165 CAAGTTTATA
Statistics
Matches: 213, Mismatches: 29, Indels: 83
0.66 0.09 0.26
Matches are distributed among these distances:
9 11 0.05
10 1 0.00
11 1 0.00
12 15 0.07
13 8 0.04
14 26 0.12
15 8 0.04
16 87 0.41
17 8 0.04
18 21 0.10
19 6 0.03
20 11 0.05
21 10 0.05
ACGTcount: A:0.32, C:0.01, G:0.17, T:0.50
Consensus pattern (16 bp):
TAAGTTATGTATTATG
Found at i:75672919 original size:60 final size:58
Alignment explanation
Indices: 75672839--75673010 Score: 234
Period size: 60 Copynumber: 3.0 Consensus size: 58
75672829 TGTATGTAAT
*
75672839 TTATGTAAGTTATGTATAATATTAATTAAGTTGTGTATTATGTAAGTTATGTATTATGTA
1 TTATGTATGTTATGTATAATATTAATTAAGTTGTGTATTATGT-A-TTATGTATTATGTA
75672899 TTATGTATGTTATGTATAATATTAATTAAGTTGTGTATTATGTATTATGTATTA--TA
1 TTATGTATGTTATGTATAATATTAATTAAGTTGTGTATTATGTATTATGTATTATGTA
75672955 TCTAT-TATG-TA--TAT--TATTAATTAAGTTGTGTATTATGTATTATGTATGTTATGTA
1 T-TATGTATGTTATGTATAATATTAATTAAGTTGTGTATTATGTATTATGTA--TTATGTA
75673010 T
1 T
75673011 AATATTAATT
Statistics
Matches: 106, Mismatches: 1, Indels: 15
0.87 0.01 0.12
Matches are distributed among these distances:
51 32 0.30
53 6 0.06
55 5 0.05
56 7 0.07
57 3 0.03
58 10 0.09
59 1 0.01
60 42 0.40
ACGTcount: A:0.31, C:0.01, G:0.15, T:0.53
Consensus pattern (58 bp):
TTATGTATGTTATGTATAATATTAATTAAGTTGTGTATTATGTATTATGTATTATGTA
Found at i:75672922 original size:44 final size:44
Alignment explanation
Indices: 75672881--75673046 Score: 215
Period size: 44 Copynumber: 3.6 Consensus size: 44
75672871 GTGTATTATG
*
75672881 TAAGTTATGTATTATGTATTATGTATGTTATGTATAATATTAAT
1 TAAGTTGTGTATTATGTATTATGTATGTTATGTATAATATTAAT
* *
75672925 TAAGTTGTGTATTATGTATTATGTATTATATCTATTATGTATATTATTAAT
1 TAAGTTGTGTATTATGTATTATG-----TA--TGTTATGTATAATATTAAT
75672976 TAAGTTGTGTATTATGTATTATGTATGTTATGTATAATATTAAT
1 TAAGTTGTGTATTATGTATTATGTATGTTATGTATAATATTAAT
*
75673020 TAAGTTGTGTATAATGTAAGTTATGTA
1 TAAGTTGTGTATTATGT-A-TTATGTA
75673047 AGAAATGTAT
Statistics
Matches: 107, Mismatches: 6, Indels: 16
0.83 0.05 0.12
Matches are distributed among these distances:
44 55 0.51
45 1 0.01
46 9 0.08
49 2 0.02
51 40 0.37
ACGTcount: A:0.33, C:0.01, G:0.15, T:0.52
Consensus pattern (44 bp):
TAAGTTGTGTATTATGTATTATGTATGTTATGTATAATATTAAT
Found at i:75672940 original size:51 final size:51
Alignment explanation
Indices: 75672885--75673046 Score: 212
Period size: 51 Copynumber: 3.3 Consensus size: 51
75672875 ATTATGTAAG
75672885 TTATGTATTATGTATTATGTATGTTATGTATAATATTAATTAAGTTGTGTA
1 TTATGTATTATGTATTATGTATGTTATGTATAATATTAATTAAGTTGTGTA
* * * *
75672936 TTATGTATTATGTATTATATCTATTATGTATATTATTAATTAAG-T-TG--
1 TTATGTATTATGTATTATGTATGTTATGTATAATATTAATTAAGTTGTGTA
75672983 ---TGTATTATGTATTATGTATGTTATGTATAATATTAATTAAGTTGTGTA
1 TTATGTATTATGTATTATGTATGTTATGTATAATATTAATTAAGTTGTGTA
*
75673031 TAATGTAAGTTATGTA
1 TTATGT-A-TTATGTA
75673047 AGAAATGTAT
Statistics
Matches: 94, Mismatches: 8, Indels: 16
0.80 0.07 0.14
Matches are distributed among these distances:
44 37 0.39
45 1 0.01
46 2 0.02
49 2 0.02
50 1 0.01
51 43 0.46
52 1 0.01
53 7 0.07
ACGTcount: A:0.32, C:0.01, G:0.15, T:0.52
Consensus pattern (51 bp):
TTATGTATTATGTATTATGTATGTTATGTATAATATTAATTAAGTTGTGTA
Found at i:75673033 original size:21 final size:21
Alignment explanation
Indices: 75672962--75673034 Score: 76
Period size: 21 Copynumber: 3.4 Consensus size: 21
75672952 ATATCTATTA
*
75672962 TGTATATTATTAATTAAGTTG
1 TGTATAATATTAATTAAGTTG
* * *
75672983 TGTATTATGTATT-ATGTATGTTA
1 TGTA-TA-ATATTAAT-TAAGTTG
75673006 TGTATAATATTAATTAAGTTG
1 TGTATAATATTAATTAAGTTG
75673027 TGTATAAT
1 TGTATAAT
75673035 GTAAGTTATG
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
21 21 0.50
22 8 0.19
23 13 0.31
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (21 bp):
TGTATAATATTAATTAAGTTG
Found at i:75673047 original size:9 final size:9
Alignment explanation
Indices: 75673033--75673170 Score: 78
Period size: 9 Copynumber: 16.0 Consensus size: 9
75673023 GTTGTGTATA
75673033 ATGTAAGTT
1 ATGTAAGTT
**
75673042 ATGTAAGAA
1 ATGTAAGTT
75673051 ATGT-A-TT
1 ATGTAAGTT
75673058 ATGTAAGTT
1 ATGTAAGTT
* *
75673067 GTGT-A-TA
1 ATGTAAGTT
*
75673074 ATGTTAGTT
1 ATGTAAGTT
**
75673083 ATCAAAGTT
1 ATGTAAGTT
*
75673092 ATGT-A-CT
1 ATGTAAGTT
75673099 ATGTAAGTT
1 ATGTAAGTT
*
75673108 ATTTAAGTT
1 ATGTAAGTT
75673117 ATGTAAGTT
1 ATGTAAGTT
*
75673126 GTGT-A-TT
1 ATGTAAGTT
75673133 ATGTAAGTT
1 ATGTAAGTT
*
75673142 AT-TATGTTATT
1 ATGTAAG---TT
75673153 ATGTAAGTT
1 ATGTAAGTT
*
75673162 ATGCAAGTT
1 ATGTAAGTT
75673171 TATATATAAG
Statistics
Matches: 95, Mismatches: 22, Indels: 24
0.67 0.16 0.17
Matches are distributed among these distances:
7 18 0.19
8 11 0.12
9 59 0.62
11 4 0.04
12 3 0.03
ACGTcount: A:0.33, C:0.02, G:0.20, T:0.46
Consensus pattern (9 bp):
ATGTAAGTT
Found at i:75673070 original size:41 final size:41
Alignment explanation
Indices: 75673020--75673107 Score: 122
Period size: 41 Copynumber: 2.1 Consensus size: 41
75673010 TAATATTAAT
** *
75673020 TAAGTTGTGTATAATGTAAGTTATGTAAGAAATGTATTATG
1 TAAGTTGTGTATAATGTAAGTTATCAAAGAAATGTACTATG
* **
75673061 TAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTACTATG
1 TAAGTTGTGTATAATGTAAGTTATCAAAGAAATGTACTATG
75673102 TAAGTT
1 TAAGTT
75673108 ATTTAAGTTA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.34, C:0.02, G:0.20, T:0.43
Consensus pattern (41 bp):
TAAGTTGTGTATAATGTAAGTTATCAAAGAAATGTACTATG
Found at i:75673117 original size:34 final size:34
Alignment explanation
Indices: 75673079--75673144 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
75673069 GTATAATGTT
75673079 AGTTATCAAAGTTATGTACTATGTAAGTTATTTA
1 AGTTATCAAAGTTATGTACTATGTAAGTTATTTA
** * *
75673113 AGTTATGTAAGTTGTGTATTATGTAAGTTATT
1 AGTTATCAAAGTTATGTACTATGTAAGTTATT
75673145 ATGTTATTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.32, C:0.03, G:0.18, T:0.47
Consensus pattern (34 bp):
AGTTATCAAAGTTATGTACTATGTAAGTTATTTA
Found at i:75673134 original size:25 final size:24
Alignment explanation
Indices: 75673020--75673170 Score: 91
Period size: 25 Copynumber: 6.2 Consensus size: 24
75673010 TAATATTAAT
*
75673020 TAAGTTGTGTATAATGTAAGTTATG
1 TAAGTTGT-TATTATGTAAGTTATG
* *
75673045 TAAGAAATG-TATTATGTAAGTTGTG
1 TAAG--TTGTTATTATGTAAGTTATG
* **
75673070 TATA-ATGTTAGTTATCAAAGTTATG
1 TA-AGTTGTTA-TTATGTAAGTTATG
* * *
75673095 T-ACTATGTAAGTTATTTAAGTTATG
1 TAAGT-TGTTA-TTATGTAAGTTATG
75673120 TAAGTTGTGTATTATGTAAGTTAT-
1 TAAGTTGT-TATTATGTAAGTTATG
75673144 T-A--TGTTATTATGTAAGTTATG
1 TAAGTTGTTATTATGTAAGTTATG
*
75673165 CAAGTT
1 TAAGTT
75673171 TATATATAAG
Statistics
Matches: 99, Mismatches: 14, Indels: 27
0.71 0.10 0.19
Matches are distributed among these distances:
20 15 0.15
21 3 0.03
22 1 0.01
23 5 0.05
24 4 0.04
25 65 0.66
26 4 0.04
27 2 0.02
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.46
Consensus pattern (24 bp):
TAAGTTGTTATTATGTAAGTTATG
Found at i:75673181 original size:12 final size:12
Alignment explanation
Indices: 75673166--75673194 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
75673156 TAAGTTATGC
75673166 AAGTTTATATAT
1 AAGTTTATATAT
75673178 AAGTTTATATAT
1 AAGTTTATATAT
75673190 AAGTT
1 AAGTT
75673195 ATGTAAGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.48
Consensus pattern (12 bp):
AAGTTTATATAT
Found at i:75673863 original size:153 final size:151
Alignment explanation
Indices: 75673586--75674023 Score: 596
Period size: 153 Copynumber: 3.0 Consensus size: 151
75673576 CAATTGTTCG
* * *
75673586 TATTTTGGCCCTTTGTTCGTATTTTTTT-TCAAATTTTATTACTTTTAAAAAATATACTATTTTT
1 TATTTCGGCCCTATGTTCGTATTTTTTTCT-AGATTTTATTACTTTTAAAAAATATACTATTTTT
*
75673650 AATTTTTTTATTTTACATTATTTTAGTACATTATATTTGAACTGTATTAATTTAGTGTGTGTTTT
65 AATTTTTTTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTGTTTT
75673715 TAAATAAATTTTAAAAAAACCCT
130 TAAATAAA-TTTAAAAAAACCCT
* *
75673738 TATTTCGGCCCTATGTTCATATTTTTTTCCTAGATTTTATTACTTTTATAAAATATACTATTTTT
1 TATTTCGGCCCTATGTTCGTATTTTTTT-CTAGATTTTATTACTTTTAAAAAATATACTATTTTT
* *
75673803 AATTTTTTTATTTTACACTATTTTAGTACATTATATTTGAAATGTATTAATTTAGCGTGTG--TT
65 AATTTTTTTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTGTTTT
75673866 T---TAAA-TTAAAAAAACCCT
130 TAAATAAATTTAAAAAAACCCT
* * * * *
75673884 TATTTCAGCCTTATGTTCGTATTTTTTTCTCGAATTTTAATAATTTTAAAAAATATACTA----T
1 TATTTCGGCCCTATGTTCGTATTTTTTTCTAG-ATTTTATTACTTTTAAAAAATATACTATTTTT
* * * *
75673945 --TTTTTTTATTTTACATTATTTTAGTACATTATATTTGAAATTTATTAATTTAGTATATTTTTT
65 AATTTTTTTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTGTTTT
75674008 TAAATAAATTTAAAAA
130 TAAATAAATTTAAAAA
75674024 TAGTATATTT
Statistics
Matches: 256, Mismatches: 21, Indels: 24
0.85 0.07 0.08
Matches are distributed among these distances:
140 53 0.21
142 4 0.02
145 7 0.03
146 69 0.27
148 4 0.02
151 3 0.01
152 25 0.10
153 90 0.35
154 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.07, T:0.53
Consensus pattern (151 bp):
TATTTCGGCCCTATGTTCGTATTTTTTTCTAGATTTTATTACTTTTAAAAAATATACTATTTTTA
ATTTTTTTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTGTTTTT
AAATAAATTTAAAAAAACCCT
Found at i:75674364 original size:122 final size:120
Alignment explanation
Indices: 75674137--75674365 Score: 302
Period size: 122 Copynumber: 1.9 Consensus size: 120
75674127 TATGTATCTT
* * *
75674137 ATTTATAATTATTTTTAAAATTATAAAATTTATTACTAATAAATTTGAAATGTAGGTTATATATC
1 ATTTACAATTATTTTTAAAATTATAAAATTTATTACTAATAAAATTGAAATATAGGTTATATATC
* * * **
75674202 CATACCATATATGGGATGATATTTTAAAAAAATAGGTTTTAATATTTAAAAAATAAC
66 CATACCATATAT--GATAAAATTTAAAAAAAATAAATTTTAATATTTAAAAAATAAC
75674259 ATTTACAATTATTTTTAAAATTATAAAATTTATTGAC-AATAAAATTGAAATATAGGTTATATAT
1 ATTTACAATTATTTTTAAAATTATAAAATTTATT-ACTAATAAAATTGAAATATAGGTTATATAT
75674323 CCATACCATATAT-A-AAAATTTAAAATATATATATAAATTTTAA
65 CCATACCATATATGATAAAATTTAAAA-A-A-A-ATAAATTTTAA
75674366 GTAATGTAAT
Statistics
Matches: 94, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
118 8 0.09
119 2 0.02
120 1 0.01
121 1 0.01
122 80 0.85
123 2 0.02
ACGTcount: A:0.47, C:0.05, G:0.06, T:0.41
Consensus pattern (120 bp):
ATTTACAATTATTTTTAAAATTATAAAATTTATTACTAATAAAATTGAAATATAGGTTATATATC
CATACCATATATGATAAAATTTAAAAAAAATAAATTTTAATATTTAAAAAATAAC
Found at i:75674411 original size:17 final size:17
Alignment explanation
Indices: 75674389--75674449 Score: 86
Period size: 17 Copynumber: 3.5 Consensus size: 17
75674379 TTTATGTAAT
* *
75674389 GTAAGTTATAAATTTTA
1 GTAAGTAATATATTTTA
*
75674406 GTAAGTAATATATTTAA
1 GTAAGTAATATATTTTA
75674423 GTAATGTAATATATTTTA
1 GTAA-GTAATATATTTTA
75674441 GTAAGTAAT
1 GTAAGTAAT
75674450 GTAAGTAATG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
17 23 0.59
18 16 0.41
ACGTcount: A:0.43, C:0.00, G:0.13, T:0.44
Consensus pattern (17 bp):
GTAAGTAATATATTTTA
Found at i:75674427 original size:39 final size:37
Alignment explanation
Indices: 75674353--75674496 Score: 132
Period size: 39 Copynumber: 3.8 Consensus size: 37
75674343 TAAAATATAT
* *
75674353 ATATAAATTTTAAGTAATGTAATATGTTTATGTAATGTA
1 ATATAAATTTT-AGTAA-GTAATATATTTAAGTAATGTA
75674392 AGTTATAAATTTTAGTAAGTAATATATTTAAGTAATGTA
1 A--TATAAATTTTAGTAAGTAATATATTTAAGTAATGTA
* ** *
75674431 ATAT--ATTTTAGTAAGTAATGTAAGTAATGTAATAT-
1 ATATAAATTTTAGTAAGTAATATATTTAA-GTAATGTA
* *
75674466 ATACTTAAATTTTAGTAAGTCATGTATTTAA
1 ATA--TAAATTTTAGTAAGTAATATATTTAA
75674497 CATTCTGTTA
Statistics
Matches: 89, Mismatches: 9, Indels: 14
0.79 0.08 0.12
Matches are distributed among these distances:
35 23 0.26
36 6 0.07
37 4 0.04
39 41 0.46
40 5 0.06
41 10 0.11
ACGTcount: A:0.42, C:0.01, G:0.12, T:0.44
Consensus pattern (37 bp):
ATATAAATTTTAGTAAGTAATATATTTAAGTAATGTA
Found at i:75674433 original size:18 final size:18
Alignment explanation
Indices: 75674361--75674449 Score: 92
Period size: 18 Copynumber: 4.8 Consensus size: 18
75674351 ATATATAAAT
*
75674361 TTTAAGTAATGTAATATG
1 TTTAAGTAATGTAATATA
*
75674379 TTTATGTAATGTAAGTTATAAA
1 TTTAAGTAATGTAA--TAT--A
*
75674401 TTTTAGTAA-GTAATATA
1 TTTAAGTAATGTAATATA
75674418 TTTAAGTAATGTAATATA
1 TTTAAGTAATGTAATATA
*
75674436 TTTTAGTAA-GTAAT
1 TTTAAGTAATGTAAT
75674450 GTAAGTAATG
Statistics
Matches: 60, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
17 14 0.23
18 29 0.48
19 3 0.05
20 3 0.05
21 4 0.07
22 7 0.12
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.46
Consensus pattern (18 bp):
TTTAAGTAATGTAATATA
Found at i:75687965 original size:27 final size:29
Alignment explanation
Indices: 75687935--75687988 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
75687925 TGCCCTTTCT
*
75687935 ATTTTAA-A-ATTTAATCCCTATATTTGA
1 ATTTTAAGACATTGAATCCCTATATTTGA
*
75687962 ATTTTAAGACATTGAGTCCCTATATTT
1 ATTTTAAGACATTGAATCCCTATATTT
75687989 TTTTATTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 7 0.30
28 1 0.04
29 15 0.65
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.46
Consensus pattern (29 bp):
ATTTTAAGACATTGAATCCCTATATTTGA
Found at i:75689603 original size:15 final size:15
Alignment explanation
Indices: 75689574--75689612 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
75689564 CTTTATACTA
* *
75689574 TAAAACATTTGTTAT
1 TAAAATATTTATTAT
*
75689589 TAATATATTTATTAT
1 TAAAATATTTATTAT
75689604 TAAAATATT
1 TAAAATATT
75689613 AATATTGAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (15 bp):
TAAAATATTTATTAT
Found at i:75689725 original size:22 final size:22
Alignment explanation
Indices: 75689697--75689750 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
75689687 TTGTTAAAAT
75689697 AATAAATTATATTAATTATATC
1 AATAAATTATATTAATTATATC
75689719 AATAAATTATATTAATTATATC
1 AATAAATTATATTAATTATATC
*
75689741 AATAATTTAT
1 AATAAATTAT
75689751 TATATGATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (22 bp):
AATAAATTATATTAATTATATC
Found at i:75689784 original size:23 final size:24
Alignment explanation
Indices: 75689757--75689817 Score: 79
Period size: 26 Copynumber: 2.5 Consensus size: 24
75689747 TTATTATATG
75689757 ATTAAAAATAAAT-GTTTAATAAT
1 ATTAAAAATAAATAGTTTAATAAT
*
75689780 ATTAAAAATTATAATATTTTAATAAT
1 ATTAAAAA-TA-AATAGTTTAATAAT
*
75689806 TTTAAAAATAAA
1 ATTAAAAATAAA
75689818 AATAAAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
23 8 0.24
24 4 0.12
25 5 0.15
26 16 0.48
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (24 bp):
ATTAAAAATAAATAGTTTAATAAT
Found at i:75692985 original size:21 final size:20
Alignment explanation
Indices: 75692961--75692999 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
75692951 CAGCTCGTTT
75692961 CAGCTCAATTTAATTTATTTC
1 CAGCTC-ATTTAATTTATTTC
*
75692982 CAGCTCATTTACTTTATT
1 CAGCTCATTTAATTTATT
75693000 GCTAGAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.26, C:0.21, G:0.05, T:0.49
Consensus pattern (20 bp):
CAGCTCATTTAATTTATTTC
Found at i:75695156 original size:6 final size:6
Alignment explanation
Indices: 75695145--75695209 Score: 51
Period size: 6 Copynumber: 10.7 Consensus size: 6
75695135 TAATTTAGCC
* * * * * *
75695145 ATTTTT ATTTTT ATTATA ATTTTT GTTTTT AGTTTA ATTTTT ACTTTCT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT A-TTTTT
75695194 ATTTTT -TCTTTT ATTT
1 ATTTTT AT-TTTT ATTT
75695210 GCTTCTGGCA
Statistics
Matches: 44, Mismatches: 12, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
5 1 0.02
6 37 0.84
7 6 0.14
ACGTcount: A:0.18, C:0.05, G:0.03, T:0.74
Consensus pattern (6 bp):
ATTTTT
Found at i:75695166 original size:18 final size:18
Alignment explanation
Indices: 75695145--75695187 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
75695135 TAATTTAGCC
75695145 ATTTTTATTTTTA-TTATA
1 ATTTTTATTTTTAGTT-TA
*
75695163 ATTTTTGTTTTTAGTTTA
1 ATTTTTATTTTTAGTTTA
75695181 ATTTTTA
1 ATTTTTA
75695188 CTTTCTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 20 0.91
19 2 0.09
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (18 bp):
ATTTTTATTTTTAGTTTA
Found at i:75696473 original size:27 final size:27
Alignment explanation
Indices: 75696443--75696497 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
75696433 GAAGAAGCCG
75696443 AACCTTGAGGAGATGTTGACGAAGTTT
1 AACCTTGAGGAGATGTTGACGAAGTTT
75696470 AACCTTGAGGAGATGTTGACGAAGTTT
1 AACCTTGAGGAGATGTTGACGAAGTTT
75696497 A
1 A
75696498 TCTCGGTGTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.31, C:0.11, G:0.29, T:0.29
Consensus pattern (27 bp):
AACCTTGAGGAGATGTTGACGAAGTTT
Found at i:75698414 original size:29 final size:30
Alignment explanation
Indices: 75698355--75698412 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
75698345 TCCGAGCCTT
*
75698355 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
75698385 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
75698413 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:75698642 original size:13 final size:13
Alignment explanation
Indices: 75698624--75698655 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
75698614 TTTCCAGCAA
75698624 TTATGAATTTATT
1 TTATGAATTTATT
75698637 TTATGAATTTATT
1 TTATGAATTTATT
*
75698650 TGATGA
1 TTATGA
75698656 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:75698862 original size:50 final size:50
Alignment explanation
Indices: 75698750--75698991 Score: 313
Period size: 50 Copynumber: 4.7 Consensus size: 50
75698740 ATTTGGGTAA
* *
75698750 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC----GA-CATG
* *
75698806 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGACATG
* * * *
75698856 AGAGGTCCCATATAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGACATG
**
75698906 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGACATG
**
75698956 AGTACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
75698992 TTTGGCATGT
Statistics
Matches: 167, Mismatches: 18, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
50 95 0.57
51 31 0.19
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGACATG
Found at i:75698938 original size:100 final size:103
Alignment explanation
Indices: 75698750--75698999 Score: 371
Period size: 100 Copynumber: 2.4 Consensus size: 103
75698740 ATTTGGGTAA
75698750 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
75698815 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
63 CCGTAAGACCATGTCTGGGACATGGCATGGGCACCGACATG
* * * *
75698856 AGAGGTCCCATATAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCCG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCCG
75698918 TAAGACCATGTCTGGGACATGGCATGGGCACCGACATG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCGACATG
* *
75698956 AGTACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
75699000 GTTATGATCA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
100 53 0.40
101 38 0.29
105 2 0.02
106 39 0.30
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCCG
TAAGACCATGTCTGGGACATGGCATGGGCACCGACATG
Found at i:75705871 original size:17 final size:17
Alignment explanation
Indices: 75705849--75705881 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
75705839 TTGGTTTTAT
75705849 CCATTAAAGCTAAATAC
1 CCATTAAAGCTAAATAC
75705866 CCATTAAAGCTAAATA
1 CCATTAAAGCTAAATA
75705882 TCTTATTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.21, G:0.06, T:0.24
Consensus pattern (17 bp):
CCATTAAAGCTAAATAC
Found at i:75706236 original size:20 final size:19
Alignment explanation
Indices: 75706211--75706250 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
75706201 ACAATTATTT
75706211 TCCAATCCAAACTGCATAAA
1 TCCAATCCAAA-TGCATAAA
*
75706231 TCCAATCCAAATTCATAAA
1 TCCAATCCAAATGCATAAA
75706250 T
1 T
75706251 AGAAGCATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.45, C:0.28, G:0.03, T:0.25
Consensus pattern (19 bp):
TCCAATCCAAATGCATAAA
Found at i:75707128 original size:3 final size:3
Alignment explanation
Indices: 75707120--75707146 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
75707110 ACAGAAAATG
75707120 GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA
75707147 AATGTAGTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:75707945 original size:44 final size:44
Alignment explanation
Indices: 75707895--75707981 Score: 138
Period size: 44 Copynumber: 2.0 Consensus size: 44
75707885 AAGAAGAAGA
** * *
75707895 AGAAAATGAAGTTACCTGGATTAACTAGAAACAAACAGCCAAAC
1 AGAAAATGAAGTTACCCAGATTAACCAGAAACAAACAGACAAAC
75707939 AGAAAATGAAGTTACCCAGATTAACCAGAAACAAACAGACAAA
1 AGAAAATGAAGTTACCCAGATTAACCAGAAACAAACAGACAAA
75707982 AAATAGAACG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.53, C:0.18, G:0.15, T:0.14
Consensus pattern (44 bp):
AGAAAATGAAGTTACCCAGATTAACCAGAAACAAACAGACAAAC
Found at i:75710279 original size:3 final size:3
Alignment explanation
Indices: 75710273--75710334 Score: 56
Period size: 3 Copynumber: 20.3 Consensus size: 3
75710263 ATTAAATTGC
* *
75710273 ATT ATT ATT ATT -GT ATT ATT -GT ATT ATCT ATT ATTT ATT ATAT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT A-TT ATT AT-T ATT
*
75710319 ATT ATT AGT ATT ATT A
1 ATT ATT ATT ATT ATT A
75710335 CTTCCATACG
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
2 2 0.04
3 37 0.77
4 9 0.19
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:75710290 original size:14 final size:14
Alignment explanation
Indices: 75710268--75710334 Score: 52
Period size: 14 Copynumber: 4.9 Consensus size: 14
75710258 TTTTGATTAA
*
75710268 ATTGCATTATTATT
1 ATTGTATTATTATT
*
75710282 ATTGTATTATT-GT
1 ATTGTATTATTATT
75710295 A-T-TATCTATTATTT
1 ATTGTAT-TATTA-TT
*
75710309 ATTATA-TATTATT
1 ATTGTATTATTATT
75710322 ATTAGTATTATTA
1 ATT-GTATTATTA
75710335 CTTCCATACG
Statistics
Matches: 42, Mismatches: 4, Indels: 13
0.71 0.07 0.22
Matches are distributed among these distances:
11 3 0.07
12 5 0.12
13 7 0.17
14 19 0.45
15 6 0.14
16 2 0.05
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.60
Consensus pattern (14 bp):
ATTGTATTATTATT
Found at i:75710299 original size:19 final size:19
Alignment explanation
Indices: 75710275--75710334 Score: 61
Period size: 22 Copynumber: 3.0 Consensus size: 19
75710265 TAAATTGCAT
75710275 TATTATTATTGTATTATTGTA
1 TATTATTATTGTATTA-T-TA
75710296 TTATCTATTATT-TATTA-TA
1 -TAT-TATTATTGTATTATTA
75710315 TATTATTATTAGTATTATTA
1 TATTATTATT-GTATTATTA
75710335 CTTCCATACG
Statistics
Matches: 34, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
17 7 0.21
18 3 0.09
19 7 0.21
20 2 0.06
22 8 0.24
23 7 0.21
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.62
Consensus pattern (19 bp):
TATTATTATTGTATTATTA
Found at i:75712636 original size:44 final size:44
Alignment explanation
Indices: 75712572--75712670 Score: 162
Period size: 44 Copynumber: 2.2 Consensus size: 44
75712562 CTGGAAGGAG
* *
75712572 GAAGGAGGCGATTTAGGGATTTGGGATTTCAAGAAATTCGGCAA
1 GAAGGAGGCGATTTACGGATTTGGGAATTCAAGAAATTCGGCAA
*
75712616 GAAGGAGGCGATTTACGGATTTGGGAATTCAAGAAATTGGGCAA
1 GAAGGAGGCGATTTACGGATTTGGGAATTCAAGAAATTCGGCAA
*
75712660 GAAGGACGCGA
1 GAAGGAGGCGA
75712671 GAATTTCAGA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 51 1.00
ACGTcount: A:0.33, C:0.10, G:0.35, T:0.21
Consensus pattern (44 bp):
GAAGGAGGCGATTTACGGATTTGGGAATTCAAGAAATTCGGCAA
Found at i:75713178 original size:24 final size:24
Alignment explanation
Indices: 75713151--75713198 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
75713141 ACGCCACCAA
75713151 CCTGCAACTCGTCAACGAAACGAT
1 CCTGCAACTCGTCAACGAAACGAT
*
75713175 CCTGCAACTCGTCAAGGAAACGAT
1 CCTGCAACTCGTCAACGAAACGAT
75713199 GTCGTACGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.33, C:0.31, G:0.19, T:0.17
Consensus pattern (24 bp):
CCTGCAACTCGTCAACGAAACGAT
Found at i:75713791 original size:7 final size:7
Alignment explanation
Indices: 75713742--75713798 Score: 51
Period size: 7 Copynumber: 8.0 Consensus size: 7
75713732 ACTAAAGTAG
75713742 CCTAAAC
1 CCTAAAC
*
75713749 CCCAAAC
1 CCTAAAC
*
75713756 CCTAAAT
1 CCTAAAC
* *
75713763 CTTAAAT
1 CCTAAAC
75713770 CCTAAAC
1 CCTAAAC
*
75713777 TACTAAAC
1 -CCTAAAC
75713785 CCTAAAC
1 CCTAAAC
*
75713792 CCAAAAC
1 CCTAAAC
75713799 ACCATAACCC
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
7 34 0.85
8 6 0.15
ACGTcount: A:0.46, C:0.37, G:0.00, T:0.18
Consensus pattern (7 bp):
CCTAAAC
Found at i:75714526 original size:229 final size:227
Alignment explanation
Indices: 75714274--75714724 Score: 584
Period size: 229 Copynumber: 2.0 Consensus size: 227
75714264 ATCTAAAAAC
** * * *
75714274 GCGCCGCTAATAGTGTACTTTAGCGGCGTTTTCCAATCAGCGCCACTAATTCTAATATACCTCAA
1 GCGCCGCTAATAGTACACTTTAGCGGCGTTTTACAATAAGCGCCACTAATCCTAATATACCTCAA
* **
75714339 GACCAAACTCTGCGTTTTGGCGTGCATATCTTGCGGCGCTTAACT-CCAATCGCCGCTAATACTA
66 GACCAAACTCTGCGTTTTGGCGTGCATATCTTGCGGCGATT--CTAAAAATCGCCGCTAATACTA
* * *
75714403 TTATTTAGCGGCA-TTTTCTCGTAAGCGCCACTAATTATAGTATACATCAAGACCAAAACGCTG-
129 TGATTTAACGGCATTTTTC-CCTAA-CGCCACTAATTATAGTATACATCAAGACCAAAACGCTGC
*
75714466 AGTTTTGGTTAAGAAATTTAGCGGCGCTTCTGGAGAA
192 A-TTTTGGTTAACAAATTTAGCGGCGCTTCTGGAGAA
* *
75714503 GCGCCGCTAATAGTACGCTTTAGCGGCGTTTTACAGTAAGCGCCACTAATCCTAATATACCTCAA
1 GCGCCGCTAATAGTACACTTTAGCGGCGTTTTACAATAAGCGCCACTAATCCTAATATACCTCAA
* * **
75714568 GACCAAACTCTGCGTTTTGGTGTGCATATCTTGTGGCGATTCTAGAAAATCGCCGCTAATGTTAT
66 GACCAAACTCTGCGTTTTGGCGTGCATATCTTGCGGCGATTCTA-AAAATCGCCGCTAATACTAT
* * * * * *
75714633 GCTTTAACGGCGTTTTTCCCTAACGCCACTAATTGTATTATACATCGAGACCAAACCGCTGCATT
130 GATTTAACGGCATTTTTCCCTAACGCCACTAATTATAGTATACATCAAGACCAAAACGCTGCATT
** *
75714698 TTGGTTAACATTTTTTGCGGCGCTTCT
195 TTGGTTAACAAATTTAGCGGCGCTTCT
75714725 ATAAAGCGCC
Statistics
Matches: 191, Mismatches: 27, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
227 2 0.01
228 59 0.31
229 125 0.65
230 5 0.03
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (227 bp):
GCGCCGCTAATAGTACACTTTAGCGGCGTTTTACAATAAGCGCCACTAATCCTAATATACCTCAA
GACCAAACTCTGCGTTTTGGCGTGCATATCTTGCGGCGATTCTAAAAATCGCCGCTAATACTATG
ATTTAACGGCATTTTTCCCTAACGCCACTAATTATAGTATACATCAAGACCAAAACGCTGCATTT
TGGTTAACAAATTTAGCGGCGCTTCTGGAGAA
Found at i:75714725 original size:114 final size:114
Alignment explanation
Indices: 75714107--75714740 Score: 369
Period size: 114 Copynumber: 5.5 Consensus size: 114
75714097 ATGCATGGTT
* * *
75714107 AAGACCAAAACTG-TGCGTTTTGGTTAAGATATTTTGCGGCGCTTACCA-AAAAGCGCCGCTAAT
1 AAGACC-AAAC-GCTGCATTTTGGTTAACATATTTTGCGGCGCTT-CTAGAAAAGCGCCGCTAAT
* * * * * * ** * *
75714170 AATATGCTTTAGCTGCGATTTATC-GTGAA-CGCCACTAATTCCAGTACACATC
63 AGTACGCTTTAACGGCGTTTTA-CACT-AAGCGCCACTAATTATAATATACATC
** * * * *** *
75714222 AAGATTTAAACGCAGCATTTCGGTTAATATATTCCACGGCGCATCTA-AAAACGCGCCGCTAATA
1 AAGA-CCAAACGCTGCATTTTGGTTAACATATTTTGCGGCGCTTCTAGAAAA-GCGCCGCTAATA
*** * * * * * *
75714286 GTGTACTTTAGCGGCGTTTTCCAATCAGCGCCACTAATTCTAATATACCTC
64 GTACGCTTTAACGGCGTTTTACACTAAGCGCCACTAATTATAATATACATC
* * * * * ** *
75714337 AAGACCAAACTCTGCGTTTTGGCGT-GCATATCTTGCGGCGCTTAACT--CCAATCGCCGCTAAT
1 AAGACCAAACGCTGCATTTTGG-TTAACATATTTTGCGGCGCTT--CTAGAAAAGCGCCGCTAAT
* *** * * * *
75714399 ACTATTATTTAGCGGCATTTT-CTCGTAAGCGCCACTAATTATAGTATACATC
63 AGTACGCTTTAACGGCGTTTTACAC-TAAGCGCCACTAATTATAATATACATC
* * * * *
75714451 AAGACCAAAACGCTG-AGTTTTGGTTAAGAAATTTAGCGGCGCTTCTGGAGAAGCGCCGCTAATA
1 AAGACC-AAACGCTGCA-TTTTGGTTAACATATTTTGCGGCGCTTCTAGAAAAGCGCCGCTAATA
* * ** *
75714515 GTACGCTTTAGCGGCGTTTTACAGTAAGCGCCACTAATCCTAATATACCTC
64 GTACGCTTTAACGGCGTTTTACACTAAGCGCCACTAATTATAATATACATC
* * * * * * *
75714566 AAGACCAAACTCTGCGTTTTGGTGT-GCATATCTTGTGGCGATTCTAGAAAATCGCCGCTAAT-G
1 AAGACCAAACGCTGCATTTTGGT-TAACATATTTTGCGGCGCTTCTAGAAAAGCGCCGCTAATAG
* * * * *
75714629 TTATGCTTTAACGGCGTTTTTCCCTAA-CGCCACTAATTGTATTATACATC
65 -TACGCTTTAACGGCGTTTTACACTAAGCGCCACTAATTATAATATACATC
* * * *
75714679 GAGACCAAACCGCTGCATTTTGGTTAACATTTTTTGCGGCGCTTCTA-TAAAGCGCCACTAAT
1 AAGACCAAA-CGCTGCATTTTGGTTAACATATTTTGCGGCGCTTCTAGAAAAGCGCCGCTAAT
75714741 TCTAATATAC
Statistics
Matches: 394, Mismatches: 105, Indels: 42
0.73 0.19 0.08
Matches are distributed among these distances:
113 44 0.11
114 178 0.45
115 169 0.43
116 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (114 bp):
AAGACCAAACGCTGCATTTTGGTTAACATATTTTGCGGCGCTTCTAGAAAAGCGCCGCTAATAGT
ACGCTTTAACGGCGTTTTACACTAAGCGCCACTAATTATAATATACATC
Found at i:75714775 original size:75 final size:75
Alignment explanation
Indices: 75714656--75714794 Score: 188
Period size: 75 Copynumber: 1.9 Consensus size: 75
75714646 TTTTCCCTAA
* * * * * *
75714656 CGCCACTAATTGTATTATACATCGAGACCAAACCGCTGCATTTTGGTTAACATTTTTTGCGGCGC
1 CGCCACTAATTCTAATATACATCAAGACCAAAACGCTGCATTTTGGTTAACATATTTTGAGGCGC
75714721 TTCTATAAAG
66 TTCTATAAAG
* * * *
75714731 CGCCACTAATTCTAATATACATCAAGATCAAAACTCTGCGTTTTGGTTATCATATTTTGAGGCG
1 CGCCACTAATTCTAATATACATCAAGACCAAAACGCTGCATTTTGGTTAACATATTTTGAGGCG
75714795 TTTTCCGTAA
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
75 54 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.34
Consensus pattern (75 bp):
CGCCACTAATTCTAATATACATCAAGACCAAAACGCTGCATTTTGGTTAACATATTTTGAGGCGC
TTCTATAAAG
Found at i:75714807 original size:75 final size:75
Alignment explanation
Indices: 75714641--75714814 Score: 181
Period size: 75 Copynumber: 2.3 Consensus size: 75
75714631 ATGCTTTAAC
* * * * *
75714641 GGCGTTTTTCCCTAA-CGCCACTAATTGTATTATACATCGAGACCAAACCGCTGCATTTTGGTTA
1 GGCG-TTTTCCATAAGCGCCACTAATTCTAATATACATCAAGACCAAAACGCTGCATTTTGGTTA
* *
75714705 ACATTTTTTGC
65 ACATATTTTGA
* * * * *
75714716 GGCG-CTTCTATAAAGCGCCACTAATTCTAATATACATCAAGATCAAAACTCTGCGTTTTGGTTA
1 GGCGTTTTCCAT-AAGCGCCACTAATTCTAATATACATCAAGACCAAAACGCTGCATTTTGGTTA
*
75714780 TCATATTTTGA
65 ACATATTTTGA
* *
75714791 GGCGTTTTCCGTAAGCGCCGCTAA
1 GGCGTTTTCCATAAGCGCCACTAA
75714815 GACTTGTTTT
Statistics
Matches: 79, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
73 4 0.05
74 2 0.03
75 69 0.87
76 4 0.05
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (75 bp):
GGCGTTTTCCATAAGCGCCACTAATTCTAATATACATCAAGACCAAAACGCTGCATTTTGGTTAA
CATATTTTGA
Found at i:75714933 original size:113 final size:114
Alignment explanation
Indices: 75714726--75714938 Score: 270
Period size: 113 Copynumber: 1.9 Consensus size: 114
75714716 GGCGCTTCTA
* ** * *
75714726 TAAAGCGCCACTAATTCTAATATACATCAAGATCAAAACTCTGCGTTTTGGTTATCATATTTTGA
1 TAAAGCGCCACTAATTCTAATATACATCAAGACCAAAACGATGCGTTTTCGTTAACATATTTTGA
* * * *
75714791 GGCGTTTTCCGTAAGCGCCGCTAAGACTTGTTTTACTGGCTTTTTTTTG
66 GGCGCTTCCCGCAAGCGCCGCTAAGACTTGCTTTACTGGCTTTTTTTTG
* * *
75714840 TAAA-CGCCACTAATTCTAATATACATCGATACCAAAACGATGCGTTTTCGTTAAGAT-TTTTGC
1 TAAAGCGCCACTAATTCTAATATACATCAAGACCAAAACGATGCGTTTTCGTTAACATATTTTG-
*
75714903 A-GCGCTTCCCGCAATGCGCCGCTAATACTTGCTTTA
65 AGGCGCTTCCCGCAA-GCGCCGCTAAGACTTGCTTTA
75714939 GCGGTTATCA
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
112 15 0.18
113 65 0.77
114 4 0.05
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.35
Consensus pattern (114 bp):
TAAAGCGCCACTAATTCTAATATACATCAAGACCAAAACGATGCGTTTTCGTTAACATATTTTGA
GGCGCTTCCCGCAAGCGCCGCTAAGACTTGCTTTACTGGCTTTTTTTTG
Found at i:75716646 original size:22 final size:23
Alignment explanation
Indices: 75716597--75716650 Score: 74
Period size: 22 Copynumber: 2.4 Consensus size: 23
75716587 CTATTTTTTA
* *
75716597 ATTAAAATTAAAATTATATTTTT
1 ATTAAAATTAAAACTATATTGTT
*
75716620 ATTAAAATTAAAGCTA-ATTGTT
1 ATTAAAATTAAAACTATATTGTT
75716642 ATTAAAATT
1 ATTAAAATT
75716651 GTATCAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 14 0.50
23 14 0.50
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (23 bp):
ATTAAAATTAAAACTATATTGTT
Found at i:75716727 original size:19 final size:17
Alignment explanation
Indices: 75716710--75716776 Score: 57
Period size: 16 Copynumber: 3.8 Consensus size: 17
75716700 ATTTTGTTAG
75716710 TAAAATTATTAATTGT-
1 TAAAATTATTAATTGTA
*
75716726 T-AATTGTATTAATTGTTA
1 TAAAAT-TATTAATTG-TA
*
75716744 CTAAAATTATCAAATTGTA
1 -TAAAATTAT-TAATTGTA
*
75716763 TCAAATTATTAATT
1 TAAAATTATTAATT
75716777 ATTAATTGTT
Statistics
Matches: 40, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
15 3 0.08
16 10 0.25
17 5 0.12
18 8 0.20
19 6 0.15
20 8 0.20
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.48
Consensus pattern (17 bp):
TAAAATTATTAATTGTA
Found at i:75716805 original size:93 final size:93
Alignment explanation
Indices: 75716695--75716878 Score: 332
Period size: 93 Copynumber: 2.0 Consensus size: 93
75716685 TTTGTAAAAT
*
75716695 CTAACATTTTGTTAGTAAAATTATTAATTGTTAATTGTATTAATTGTTACTAAAATTATCAAATT
1 CTAACATTTTGTTAGTAAAATTATTAATTATTAATTGTATTAATTGTTACTAAAATTATCAAATT
*
75716760 GTATCAAATTATTAATTATTAATTGTTA
66 ATATCAAATTATTAATTATTAATTGTTA
*
75716788 CTAACATTTTGTTAGTAAAATTATTAATTATTAATTGTATTAATTGTTAGTAAAATTATCAAATT
1 CTAACATTTTGTTAGTAAAATTATTAATTATTAATTGTATTAATTGTTACTAAAATTATCAAATT
*
75716853 ATATCAAATTATTAATTGTTAATTGT
66 ATATCAAATTATTAATTATTAATTGT
75716879 ATTAATTGTT
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 87 1.00
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.48
Consensus pattern (93 bp):
CTAACATTTTGTTAGTAAAATTATTAATTATTAATTGTATTAATTGTTACTAAAATTATCAAATT
ATATCAAATTATTAATTATTAATTGTTA
Found at i:75716951 original size:22 final size:21
Alignment explanation
Indices: 75716920--75716965 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
75716910 TAACTTAAAA
*
75716920 TAAAACTAAAACTAGTATAT-TT
1 TAAAAATAAAA-TA-TATATATT
75716942 TAAAAATAAAATATATATATT
1 TAAAAATAAAATATATATATT
75716963 TAA
1 TAA
75716966 TATATTTTCG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 5 0.23
21 7 0.32
22 10 0.45
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (21 bp):
TAAAAATAAAATATATATATT
Found at i:75718029 original size:40 final size:39
Alignment explanation
Indices: 75717954--75718030 Score: 91
Period size: 40 Copynumber: 1.9 Consensus size: 39
75717944 AAGACTGAGC
* * * *
75717954 ATTAGTGGCATTTTTAAAAAAATGCCACAAGAAATAAGT
1 ATTAGCGGCATTTTCAAAAAAACGCCACAAAAAATAAGT
* *
75717993 ATTAGCGGCATTTTCAGGAAAAACGCCGCAAAAAATAA
1 ATTAGCGGCATTTTCA-AAAAAACGCCACAAAAAATAA
75718031 AATATAACGG
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
39 14 0.45
40 17 0.55
ACGTcount: A:0.45, C:0.14, G:0.17, T:0.23
Consensus pattern (39 bp):
ATTAGCGGCATTTTCAAAAAAACGCCACAAAAAATAAGT
Found at i:75718296 original size:41 final size:40
Alignment explanation
Indices: 75718227--75718314 Score: 124
Period size: 41 Copynumber: 2.1 Consensus size: 40
75718217 TAATTGTCGG
*
75718227 GGTTTTAGTGGCGTTTTTGGTATTGCGCCGCTAATGGTATT
1 GGTTTTAGTGGCATTTTTGGTATTGCGCCGCTAATGGT-TT
*
75718268 GGTTTTAGTGGCATTTTT-GTTTTAGCGCCGCTAATGGTTT
1 GGTTTTAGTGGCATTTTTGGTATT-GCGCCGCTAATGGTTT
75718308 GTGTTTT
1 G-GTTTT
75718315 TAGCGGTATG
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
40 7 0.16
41 36 0.84
ACGTcount: A:0.11, C:0.11, G:0.30, T:0.48
Consensus pattern (40 bp):
GGTTTTAGTGGCATTTTTGGTATTGCGCCGCTAATGGTTT
Found at i:75719029 original size:15 final size:15
Alignment explanation
Indices: 75719009--75719037 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
75718999 CAGGATTTAA
75719009 GGTTTAGGGGTTAGT
1 GGTTTAGGGGTTAGT
75719024 GGTTTAGGGGTTAG
1 GGTTTAGGGGTTAG
75719038 ATATTAGTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.00, G:0.48, T:0.38
Consensus pattern (15 bp):
GGTTTAGGGGTTAGT
Found at i:75719715 original size:375 final size:375
Alignment explanation
Indices: 75719024--75720449 Score: 2362
Period size: 375 Copynumber: 3.8 Consensus size: 375
75719014 AGGGGTTAGT
* * * * * *
75719024 GGTTTAGGGGTTAGATATTAGTGGTTAAGACTTAGGGATTTTGTGTTTAGGGTTTTAGGGGTCGG
1 GGTTTAGGGGTTAGATATTAGTTGTTAAGACTTAGGGATTTTTTGTTTAGGGTTTCAAGGGCCGA
* *
75719089 GTTACGGTTTT-GGTTTAGAATAA-TTTTTATTTATATTTTAAATATGTTCTTATGTAATTGTAA
66 GTTACGATTTTGGGTTTAGATTAATTTTTTATTTATATTTTAAATATGTTCTTATGTAATTGTAA
* *
75719152 AATATGTATAATTTAGGGTTTAATTAATTATGCCTTGAGAGAGATATATATAATAGATAGAGTAC
131 AAGATGTATAAATTAGGGTTT-A--AATTATGCCTTGAGAGAGATATATATAATAGATAGAGTAC
75719217 TTAAATATTTATATCCCTTCAATGGTTAATTTAGGCGGGTTTAATAAGATTAAGGTTTAACTGAG
193 TTAAATATTTATATCCCTTCAATGGTTAATTTAGGCGGGTTTAATAAGATTAAGGTTTAACTGAG
75719282 ATTTTGAATTTTATACAATTAATTAATGCTTTTTAATGTTTAGGGAGTACTATATATATATGGAT
258 ATTTTGAATTTTATACAATTAATTAATGCTTTTTAATGTTTAGGGAGTACTATATATATATGGAT
*
75719347 TTAGGGATTATAGATTATGGATTATGCTTAATTAAGGGTTGGCCGGGATTTAA
323 TTAGGGATTATAGATTATGGATTATGCTTAATTAAGGGTTGGTCGGGATTTAA
75719400 GGTTTAGGGGTTAGATATTAGTTGTTAAGACTTAGGGATTTTTTGTTTAGGGTTTCAAGGGCCGA
1 GGTTTAGGGGTTAGATATTAGTTGTTAAGACTTAGGGATTTTTTGTTTAGGGTTTCAAGGGCCGA
*
75719465 GTTATGATTTTGGGTTTAGATTAATTTTTTATTTATATTTTAAATATGTTCTTATGTAATTGTAA
66 GTTACGATTTTGGGTTTAGATTAATTTTTTATTTATATTTTAAATATGTTCTTATGTAATTGTAA
*
75719530 AAGATGTATAATTTAGGGTTTAAATTATGCCTTGAGAGAGATATATATAATAGATAGAGTACTTA
131 AAGATGTATAAATTAGGGTTTAAATTATGCCTTGAGAGAGATATATATAATAGATAGAGTACTTA
75719595 AATATTTATATCCCTTCAATGGTTAATTTAGGCGGGTTTAATAAGATTAAGGTTTAACTGAGATT
196 AATATTTATATCCCTTCAATGGTTAATTTAGGCGGGTTTAATAAGATTAAGGTTTAACTGAGATT
75719660 TTGAATTTTATACAATTAATTAATGCTTTTTAATGTTTAGGGAGTACTATATATATATGGATTTA
261 TTGAATTTTATACAATTAATTAATGCTTTTTAATGTTTAGGGAGTACTATATATATATGGATTTA
75719725 GGGATTATAGATTATGGATTATGCTTAATTAAGGGTTGGTCGGGATTTAA
326 GGGATTATAGATTATGGATTATGCTTAATTAAGGGTTGGTCGGGATTTAA
75719775 GGTTTAGGGGTTAGATATTAGTTGTTAAGACTTAGGGATTTTTTGTTTAGGGTTTCAAGGGCCGA
1 GGTTTAGGGGTTAGATATTAGTTGTTAAGACTTAGGGATTTTTTGTTTAGGGTTTCAAGGGCCGA
*
75719840 GTTATGATTTTGGGTTTAGATTAATTTTTTATTTATATTTTAAATATGTTCTTATGTAATTGTAA
66 GTTACGATTTTGGGTTTAGATTAATTTTTTATTTATATTTTAAATATGTTCTTATGTAATTGTAA
*
75719905 AAGATGTATAAATTAGGGTTTAAATTATGCCTTGAGAGAGATATATATAATAGATAGAATACTTA
131 AAGATGTATAAATTAGGGTTTAAATTATGCCTTGAGAGAGATATATATAATAGATAGAGTACTTA
*
75719970 AATATTTATATCCCGTCAATGGTTAATTTAGGCGGGTTTAATAAGATTAAGGTTTAACTGAGATT
196 AATATTTATATCCCTTCAATGGTTAATTTAGGCGGGTTTAATAAGATTAAGGTTTAACTGAGATT
75720035 TTGAATTTTATACAATATTTAATTAATGCTTTTTAATGTTTAGGGAGTACTATATATATATATGG
261 TTGAATTTTATAC-A-A-TTAATTAATGCTTTTTAATGTTTAGGGAGTAC--TATATATATATGG
75720100 ATTTAGGGATTATAGATTATGGATTATGCTTAATTAAGGGTTGGTCGGGATTTAA
321 ATTTAGGGATTATAGATTATGGATTATGCTTAATTAAGGGTTGGTCGGGATTTAA
*** * ** *
75720155 GGTTTAGGGGTTAGGGGTTAGATGTTAATGATTAAGAC-TAGAGA-TTTAGGACTTAGGGTTTCA
1 GGTTTAGGGGTTAGATATT--A-G-T--TG-TTAAGACTTAGGGATTTTTTG-TTTAGGGTTTCA
* * * *
75720218 GGGGTCGGGTTACAATTTTGGGTTTAGATTAATTTTTTTATTTATATTTTAAATATGTTCTTATG
58 AGGGCCGAGTTACGATTTTGGGTTTAGATTAA-TTTTTTATTTATATTTTAAATATGTTCTTATG
*
75720283 TAATTGTAAAAGATGTATAAATTAGGGTTTAAATTATGCCTT--GAGATATATATATAATAGATA
122 TAATTGTAAAAGATGTATAAATTAGGGTTTAAATTATGCCTTGAGAGAGATATATATAATAGATA
*
75720346 GAGTACTTAAATATTTATATCCCTTCAATGGTTAATTTAGGTGGGTTTAATAAGATTAAGGTTTA
187 GAGTACTTAAATATTTATATCCCTTCAATGGTTAATTTAGGCGGGTTTAATAAGATTAAGGTTTA
* *
75720411 TA-TTAGGTTTTGAATTTTATACAATTAATTAATGCTTTT
252 -ACTGAGATTTTGAATTTTATACAATTAATTAATGCTTTT
75720450 ATATTTTTTT
Statistics
Matches: 1001, Mismatches: 32, Indels: 28
0.94 0.03 0.03
Matches are distributed among these distances:
375 492 0.49
376 69 0.07
377 13 0.01
378 92 0.09
380 84 0.08
382 16 0.02
383 2 0.00
384 2 0.00
385 104 0.10
386 46 0.05
387 81 0.08
ACGTcount: A:0.31, C:0.05, G:0.21, T:0.43
Consensus pattern (375 bp):
GGTTTAGGGGTTAGATATTAGTTGTTAAGACTTAGGGATTTTTTGTTTAGGGTTTCAAGGGCCGA
GTTACGATTTTGGGTTTAGATTAATTTTTTATTTATATTTTAAATATGTTCTTATGTAATTGTAA
AAGATGTATAAATTAGGGTTTAAATTATGCCTTGAGAGAGATATATATAATAGATAGAGTACTTA
AATATTTATATCCCTTCAATGGTTAATTTAGGCGGGTTTAATAAGATTAAGGTTTAACTGAGATT
TTGAATTTTATACAATTAATTAATGCTTTTTAATGTTTAGGGAGTACTATATATATATGGATTTA
GGGATTATAGATTATGGATTATGCTTAATTAAGGGTTGGTCGGGATTTAA
Found at i:75721473 original size:28 final size:28
Alignment explanation
Indices: 75721441--75721497 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 28
75721431 AATAAAAAAA
*
75721441 TAAAAAT-GAAATAAAAACACTAAAATT
1 TAAAAATATAAATAAAAACACTAAAATT
* * *
75721468 TAAAAATATTAGTTAAAACACTAAAATT
1 TAAAAATATAAATAAAAACACTAAAATT
75721496 TA
1 TA
75721498 TAATTATTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 7 0.28
28 18 0.72
ACGTcount: A:0.61, C:0.07, G:0.04, T:0.28
Consensus pattern (28 bp):
TAAAAATATAAATAAAAACACTAAAATT
Found at i:75721505 original size:28 final size:28
Alignment explanation
Indices: 75721454--75721508 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
75721444 AAATGAAATA
75721454 AAAACACTAAAATTTAAAAATATTAGTT
1 AAAACACTAAAATTTAAAAATATTAGTT
* *
75721482 AAAACACTAAAATTTATAATTATTAGT
1 AAAACACTAAAATTTAAAAATATTAGT
75721509 ACTATATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.55, C:0.07, G:0.04, T:0.35
Consensus pattern (28 bp):
AAAACACTAAAATTTAAAAATATTAGTT
Found at i:75722258 original size:42 final size:42
Alignment explanation
Indices: 75722199--75722283 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
75722189 AGTTAGATCG
75722199 ACTAATTGGGTAAAAAGAAAAAGAGCCATGTTGAATGAGTTA
1 ACTAATTGGGTAAAAAGAAAAAGAGCCATGTTGAATGAGTTA
75722241 ACTAATTGGGTAAAAAGAAAAAGAGCCATGTTGAATGAGTTA
1 ACTAATTGGGTAAAAAGAAAAAGAGCCATGTTGAATGAGTTA
75722283 A
1 A
75722284 TCTTCGCAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.46, C:0.07, G:0.24, T:0.24
Consensus pattern (42 bp):
ACTAATTGGGTAAAAAGAAAAAGAGCCATGTTGAATGAGTTA
Found at i:75723369 original size:14 final size:14
Alignment explanation
Indices: 75723350--75723379 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
75723340 TAAAAGGTTT
75723350 TTTAGTTAATCATC
1 TTTAGTTAATCATC
75723364 TTTAGTTAATCATC
1 TTTAGTTAATCATC
75723378 TT
1 TT
75723380 GCTGTTCGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.13, G:0.07, T:0.53
Consensus pattern (14 bp):
TTTAGTTAATCATC
Found at i:75723627 original size:37 final size:38
Alignment explanation
Indices: 75723557--75723632 Score: 109
Period size: 37 Copynumber: 2.0 Consensus size: 38
75723547 TTATGCAAGT
* *
75723557 AGTATCGAATGCAAATTGTTTTAACCGCCATTTGATCAA
1 AGTATCAAATGCAAATTG-TTTAACAGCCATTTGATCAA
*
75723596 AGTATCAAATGCCAATTG-TTAACAGCCATTTGATCAA
1 AGTATCAAATGCAAATTGTTTAACAGCCATTTGATCAA
75723633 TTGTTCTGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 18 0.53
39 16 0.47
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (38 bp):
AGTATCAAATGCAAATTGTTTAACAGCCATTTGATCAA
Found at i:75724130 original size:38 final size:39
Alignment explanation
Indices: 75724061--75724136 Score: 104
Period size: 38 Copynumber: 2.0 Consensus size: 39
75724051 ATGCAAAATG
75724061 GATATTTTTTAGAAATATCAATTATATTTTTTAATATAA
1 GATATTTTTTAGAAATATCAATTATATTTTTTAATATAA
*
75724100 GATA-TTTTTA-ATATATGCAATCTATA-TTTTTAATATA
1 GATATTTTTTAGAAATAT-CAAT-TATATTTTTTAATATA
75724137 CGGTATGGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
37 5 0.15
38 21 0.62
39 8 0.24
ACGTcount: A:0.39, C:0.04, G:0.05, T:0.51
Consensus pattern (39 bp):
GATATTTTTTAGAAATATCAATTATATTTTTTAATATAA
Found at i:75724166 original size:55 final size:55
Alignment explanation
Indices: 75724101--75724216 Score: 223
Period size: 55 Copynumber: 2.1 Consensus size: 55
75724091 TTAATATAAG
75724101 ATATTTTTAATATATGCAATCTATATTTTTAATATACGGTATGGATATGTAACAT
1 ATATTTTTAATATATGCAATCTATATTTTTAATATACGGTATGGATATGTAACAT
*
75724156 ATATTTTTAATATATGCAATCTATATTTTTAATATATGGTATGGATATGTAACAT
1 ATATTTTTAATATATGCAATCTATATTTTTAATATACGGTATGGATATGTAACAT
75724211 ATATTT
1 ATATTT
75724217 CAAATTTTAT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 60 1.00
ACGTcount: A:0.36, C:0.06, G:0.10, T:0.47
Consensus pattern (55 bp):
ATATTTTTAATATATGCAATCTATATTTTTAATATACGGTATGGATATGTAACAT
Found at i:75724411 original size:9 final size:9
Alignment explanation
Indices: 75724397--75724813 Score: 164
Period size: 9 Copynumber: 46.7 Consensus size: 9
75724387 AACTTACATA
75724397 ATAACTTAC
1 ATAACTTAC
*
75724406 ATAACTTAT
1 ATAACTTAC
*
75724415 ATAGAACTTAT
1 AT--AACTTAC
*
75724426 ATAACAACTTGC
1 AT---AACTTAC
75724438 ATAACTTAC
1 ATAACTTAC
*
75724447 ATAA-TAAC
1 ATAACTTAC
*
75724455 ATAA-TAAC
1 ATAACTTAC
*
75724463 GTAA--TAC
1 ATAACTTAC
*
75724470 TATATAGCCTAC
1 -ATA-A-CTTAC
* *
75724482 ATAAATTGC
1 ATAACTTAC
*
75724491 ATAACTCAC
1 ATAACTTAC
75724500 ATAA--TAC
1 ATAACTTAC
*
75724507 ACAACTTAC
1 ATAACTTAC
* *
75724516 ATAACTAAA
1 ATAACTTAC
75724525 ATAACTTAC
1 ATAACTTAC
75724534 ATAA--TAC
1 ATAACTTAC
75724541 ATAACTTAC
1 ATAACTTAC
*
75724550 ATTAATATTATAC
1 A-T-A-ACT-TAC
75724563 ATAACTTAC
1 ATAACTTAC
75724572 ATAACTTA-
1 ATAACTTAC
75724580 ATTAA-TTA-
1 A-TAACTTAC
*
75724588 AT-ACTAAAC
1 ATAACT-TAC
*
75724597 ATAACTTGTC
1 ATAACTT-AC
*
75724607 A-GACTTAC
1 ATAACTTAC
75724615 ATAACTTAC
1 ATAACTTAC
75724624 ATAA--TAC
1 ATAACTTAC
*
75724631 ACAACTTAC
1 ATAACTTAC
*
75724640 ACAACTTAC
1 ATAACTTAC
75724649 ATAACTTAC
1 ATAACTTAC
75724658 ATAA--TAC
1 ATAACTTAC
* *
75724665 ACAACTTAT
1 ATAACTTAC
*
75724674 ATAACTTAA
1 ATAACTTAC
* *
75724683 AAAACTTAT
1 ATAACTTAC
75724692 ATAA--TAC
1 ATAACTTAC
75724699 ATAACTTAC
1 ATAACTTAC
*
75724708 ATTAATATTATAC
1 A-T-A-ACT-TAC
*
75724721 ATAAGTTAC
1 ATAACTTAC
75724730 ATAA-TTA-
1 ATAACTTAC
* *
75724737 AT-ATTATAT
1 ATAACT-TAC
*
75724746 ATTAACTTGTC
1 A-TAACTT-AC
**
75724757 -GGACTTAC
1 ATAACTTAC
75724765 ATAACTTAC
1 ATAACTTAC
75724774 ATAA--TAC
1 ATAACTTAC
*
75724781 TTAACTTAC
1 ATAACTTAC
*
75724790 ATTACTTAC
1 ATAACTTAC
75724799 ATAACTTAC
1 ATAACTTAC
75724808 ATAACT
1 ATAACT
75724814 CATATATACT
Statistics
Matches: 312, Mismatches: 54, Indels: 84
0.69 0.12 0.19
Matches are distributed among these distances:
6 2 0.01
7 43 0.14
8 30 0.10
9 180 0.58
10 14 0.04
11 18 0.06
12 17 0.05
13 8 0.03
ACGTcount: A:0.46, C:0.18, G:0.03, T:0.34
Consensus pattern (9 bp):
ATAACTTAC
Found at i:75724421 original size:32 final size:32
Alignment explanation
Indices: 75724371--75724445 Score: 105
Period size: 32 Copynumber: 2.3 Consensus size: 32
75724361 TCAATCATAT
*
75724371 CATAACTTATATATAGAACTTACATAATAACTTA
1 CATAAC-T-TATATAGAACTTACATAACAACTTA
* *
75724405 CATAACTTATATAGAACTTATATAACAACTTG
1 CATAACTTATATAGAACTTACATAACAACTTA
75724437 CATAACTTA
1 CATAACTTA
75724446 CATAATAACA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
32 31 0.82
33 1 0.03
34 6 0.16
ACGTcount: A:0.45, C:0.16, G:0.04, T:0.35
Consensus pattern (32 bp):
CATAACTTATATAGAACTTACATAACAACTTA
Found at i:75724599 original size:34 final size:38
Alignment explanation
Indices: 75724490--75724630 Score: 129
Period size: 34 Copynumber: 3.9 Consensus size: 38
75724480 ACATAAATTG
* *
75724490 CATAACTCACATAATACACAACTTACA-T-A-ACTAAA
1 CATAACTTACATAATACATAACTTACATTAATACTAAA
* *
75724525 -ATAACTTACATAATACATAACTTACATTAATATTATA
1 CATAACTTACATAATACATAACTTACATTAATACTAAA
*
75724562 CATAACTTACAT-A-ACTTAA-TTA-ATTAATACTAAA
1 CATAACTTACATAATACATAACTTACATTAATACTAAA
* * *
75724596 CATAACTTGTCAGACTTACATAACTTACA-TAATAC
1 CATAACTT-ACATA-ATACATAACTTACATTAATAC
75724631 ACAACTTACA
Statistics
Matches: 85, Mismatches: 11, Indels: 16
0.76 0.10 0.14
Matches are distributed among these distances:
34 42 0.49
35 6 0.07
36 6 0.07
37 5 0.06
38 16 0.19
39 9 0.11
40 1 0.01
ACGTcount: A:0.48, C:0.19, G:0.01, T:0.32
Consensus pattern (38 bp):
CATAACTTACATAATACATAACTTACATTAATACTAAA
Found at i:75724637 original size:34 final size:34
Alignment explanation
Indices: 75724609--75724708 Score: 146
Period size: 34 Copynumber: 2.9 Consensus size: 34
75724599 AACTTGTCAG
75724609 ACTTACATAACTTACATAATACACAACTTACACA
1 ACTTACATAACTTACATAATACACAACTTACACA
* *
75724643 ACTTACATAACTTACATAATACACAACTTATATA
1 ACTTACATAACTTACATAATACACAACTTACACA
* * * *
75724677 ACTTAAAAAACTTATATAATACATAACTTACA
1 ACTTACATAACTTACATAATACACAACTTACA
75724709 TTAATATTAT
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 59 1.00
ACGTcount: A:0.49, C:0.21, G:0.00, T:0.30
Consensus pattern (34 bp):
ACTTACATAACTTACATAATACACAACTTACACA
Found at i:75724656 original size:43 final size:42
Alignment explanation
Indices: 75724504--75724661 Score: 124
Period size: 43 Copynumber: 3.6 Consensus size: 42
75724494 ACTCACATAA
* *
75724504 TACACAACTTACATAACTAAAATAACTTACATAATACATAACT
1 TACACAACTTACATAACTTACATAACTTACATAATACA-AACT
* * *
75724547 TACATTAATATTATACATAACTTACATAACTTA-ATTAATTA-ATACT
1 TACA--CA-ACT-TACATAACTTACATAACTTACA-TAA-TACAAACT
* * * *
75724593 AAACATAACTTGTCA-GACTTACATAACTTACATAATACACAACT
1 -TACACAACTT-ACATAACTTACATAACTTACATAATACA-AACT
75724637 TACACAACTTACATAACTTACATAA
1 TACACAACTTACATAACTTACATAA
75724662 TACACAACTT
Statistics
Matches: 88, Mismatches: 15, Indels: 24
0.69 0.12 0.19
Matches are distributed among these distances:
42 4 0.05
43 41 0.47
44 8 0.09
45 2 0.02
46 6 0.07
47 25 0.28
48 2 0.02
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.32
Consensus pattern (42 bp):
TACACAACTTACATAACTTACATAACTTACATAATACAAACT
Found at i:75724720 original size:22 final size:22
Alignment explanation
Indices: 75724690--75724739 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
75724680 TAAAAAACTT
75724690 ATATAATACATAACTTACATTA
1 ATATAATACATAACTTACATTA
* *
75724712 ATATTATACATAAGTTACA-TA
1 ATATAATACATAACTTACATTA
75724733 AT-TAATA
1 ATATAATA
75724740 TTATATATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 4 0.16
21 4 0.16
22 17 0.68
ACGTcount: A:0.50, C:0.10, G:0.02, T:0.38
Consensus pattern (22 bp):
ATATAATACATAACTTACATTA
Found at i:75728711 original size:755 final size:755
Alignment explanation
Indices: 75727261--75728771 Score: 3022
Period size: 755 Copynumber: 2.0 Consensus size: 755
75727251 GAGAACATTG
75727261 TCGGTACAATTTTGAATGTAGACGGAAAATCAAAAGACAATCTTCAGAGTAGACTTGATTAGTTT
1 TCGGTACAATTTTGAATGTAGACGGAAAATCAAAAGACAATCTTCAGAGTAGACTTGATTAGTTT
75727326 AGATGGGAATTCGACCTGATCTTCATCTGTTTTGCATGGTGTTGAAGGATATAAAGGTTCCAGAT
66 AGATGGGAATTCGACCTGATCTTCATCTGTTTTGCATGGTGTTGAAGGATATAAAGGTTCCAGAT
75727391 GCGTATGCATCAAATATATCTTGATGTGTTATTGTTAAAGATCGAAGACTATATTCGCTAAAATC
131 GCGTATGCATCAAATATATCTTGATGTGTTATTGTTAAAGATCGAAGACTATATTCGCTAAAATC
75727456 ACATGACTATCACATCTTGATGCAAGATTTACTACCAGTTGCTCTACAATGTTGTATGTCGAAGA
196 ACATGACTATCACATCTTGATGCAAGATTTACTACCAGTTGCTCTACAATGTTGTATGTCGAAGA
75727521 AGGTGATGTCTTGTATAATTGAACTATCCAATATAATGAAAGCCATTTGTGGCAAAGTTTTGGAT
261 AGGTGATGTCTTGTATAATTGAACTATCCAATATAATGAAAGCCATTTGTGGCAAAGTTTTGGAT
75727586 GTTCAAGAACTTTAGAAGATACAGGATCGAGCCGCTTTGACTTTATGCAACATGGAGAAAATCTT
326 GTTCAAGAACTTTAGAAGATACAGGATCGAGCCGCTTTGACTTTATGCAACATGGAGAAAATCTT
75727651 CCTACTTTCCTTCTTCACAATTATGGTTCACTTGATAATCCATCTCCCACATGAAGCAATTCTTG
391 CCTACTTTCCTTCTTCACAATTATGGTTCACTTGATAATCCATCTCCCACATGAAGCAATTCTTG
75727716 GTGGACCCGTTTTCTATCGATGGATGTATCCAATAGAAAGGTGTTAATTACAATTTTTAAAATTT
456 GTGGACCCGTTTTCTATCGATGGATGTATCCAATAGAAAGGTGTTAATTACAATTTTTAAAATTT
75727781 TCCTTCGATCACCTATATGCCTTTAGTTACAACTTTTGATAATGTTGTATATCGTGTTTAGGTTC
521 TCCTTCGATCACCTATATGCCTTTAGTTACAACTTTTGATAATGTTGTATATCGTGTTTAGGTTC
75727846 CTTTCCAAATTAAAGTCTTACTGTCGCAACAAGTGTTATCCAGAAGGATCGATTGCTGAAGGCTA
586 CTTTCCAAATTAAAGTCTTACTGTCGCAACAAGTGTTATCCAGAAGGATCGATTGCTGAAGGCTA
75727911 CTTGGCAGAGGAATGTATGACCTTCTGTTCAAGATATTTGAAAGATGTTGAAACAAGGTTGAGCA
651 CTTGGCAGAGGAATGTATGACCTTCTGTTCAAGATATTTGAAAGATGTTGAAACAAGGTTGAGCA
75727976 GACCCAATAGAATTGCTGGACTCACTGATCATAACTTCGC
716 GACCCAATAGAATTGCTGGACTCACTGATCATAACTTCGC
75728016 TCGGTACAATTTTGAATGTAGACGGAAAATCAAAAGACAATCTTCAGAGTAGACTTGATTAGTTT
1 TCGGTACAATTTTGAATGTAGACGGAAAATCAAAAGACAATCTTCAGAGTAGACTTGATTAGTTT
75728081 AGATGGGAATTCGACCTGATCTTCATCTGTTTTGCATGGTGTTGAAGGATATAAAGGTTCCAGAT
66 AGATGGGAATTCGACCTGATCTTCATCTGTTTTGCATGGTGTTGAAGGATATAAAGGTTCCAGAT
75728146 GCGTATGCATCAAATATATCTTGATGTGTTATTGTTAAAGATCGAAGACTATATTCGCTAAAATC
131 GCGTATGCATCAAATATATCTTGATGTGTTATTGTTAAAGATCGAAGACTATATTCGCTAAAATC
75728211 ACATGACTATCACATCTTGATGCAAGATTTACTACCAGTTGCTCTACAATGTTGTATGTCGAAGA
196 ACATGACTATCACATCTTGATGCAAGATTTACTACCAGTTGCTCTACAATGTTGTATGTCGAAGA
75728276 AGGTGATGTCTTGTATAATTGAACTATCCAATATAATGAAAGCCATTTGTGGCAAAGTTTTGGAT
261 AGGTGATGTCTTGTATAATTGAACTATCCAATATAATGAAAGCCATTTGTGGCAAAGTTTTGGAT
75728341 GTTCAAGAACTTTAGAAGATACAGGATCGAGCCGCTTTGACTTTATGCAACATGGAGAAAATCTT
326 GTTCAAGAACTTTAGAAGATACAGGATCGAGCCGCTTTGACTTTATGCAACATGGAGAAAATCTT
75728406 CCTACTTTCCTTCTTCACAATTATGGTTCACTTGATAATCCATCTCCCACATGAAGCAATTCTTG
391 CCTACTTTCCTTCTTCACAATTATGGTTCACTTGATAATCCATCTCCCACATGAAGCAATTCTTG
75728471 GTGGACCCGTTTTCTATCGATGGATGTATCCAATAGAAAGGTGTTAATTACAATTTTTAAAATTT
456 GTGGACCCGTTTTCTATCGATGGATGTATCCAATAGAAAGGTGTTAATTACAATTTTTAAAATTT
75728536 TCCTTCGATCACCTATATGCCTTTAGTTACAACTTTTGATAATGTTGTATATCGTGTTTAGGTTC
521 TCCTTCGATCACCTATATGCCTTTAGTTACAACTTTTGATAATGTTGTATATCGTGTTTAGGTTC
75728601 CTTTCCAAATTAAAGTCTTACTGTCGCAACAAGTGTTATCCAGAAGGATCGATTGCTGAAGGCTA
586 CTTTCCAAATTAAAGTCTTACTGTCGCAACAAGTGTTATCCAGAAGGATCGATTGCTGAAGGCTA
75728666 CTTGGCAGAGGAATGTATGACCTTCTGTTCAAGATATTTGAAAGATGTTGAAACAAGGTTGAGCA
651 CTTGGCAGAGGAATGTATGACCTTCTGTTCAAGATATTTGAAAGATGTTGAAACAAGGTTGAGCA
75728731 GACCCAATAGAATTGCTGGACTCACTGATCATAACTTCGC
716 GACCCAATAGAATTGCTGGACTCACTGATCATAACTTCGC
75728771 T
1 T
75728772 GATACTTATT
Statistics
Matches: 756, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
755 756 1.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (755 bp):
TCGGTACAATTTTGAATGTAGACGGAAAATCAAAAGACAATCTTCAGAGTAGACTTGATTAGTTT
AGATGGGAATTCGACCTGATCTTCATCTGTTTTGCATGGTGTTGAAGGATATAAAGGTTCCAGAT
GCGTATGCATCAAATATATCTTGATGTGTTATTGTTAAAGATCGAAGACTATATTCGCTAAAATC
ACATGACTATCACATCTTGATGCAAGATTTACTACCAGTTGCTCTACAATGTTGTATGTCGAAGA
AGGTGATGTCTTGTATAATTGAACTATCCAATATAATGAAAGCCATTTGTGGCAAAGTTTTGGAT
GTTCAAGAACTTTAGAAGATACAGGATCGAGCCGCTTTGACTTTATGCAACATGGAGAAAATCTT
CCTACTTTCCTTCTTCACAATTATGGTTCACTTGATAATCCATCTCCCACATGAAGCAATTCTTG
GTGGACCCGTTTTCTATCGATGGATGTATCCAATAGAAAGGTGTTAATTACAATTTTTAAAATTT
TCCTTCGATCACCTATATGCCTTTAGTTACAACTTTTGATAATGTTGTATATCGTGTTTAGGTTC
CTTTCCAAATTAAAGTCTTACTGTCGCAACAAGTGTTATCCAGAAGGATCGATTGCTGAAGGCTA
CTTGGCAGAGGAATGTATGACCTTCTGTTCAAGATATTTGAAAGATGTTGAAACAAGGTTGAGCA
GACCCAATAGAATTGCTGGACTCACTGATCATAACTTCGC
Found at i:75731612 original size:66 final size:66
Alignment explanation
Indices: 75731506--75731669 Score: 206
Period size: 66 Copynumber: 2.5 Consensus size: 66
75731496 AGCAAATTAC
* * *
75731506 ACAACTTAAAGCGGAGGCAGCAT-CGAGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTACA
1 ACAACTTAAAGCAGAGGCGGC-TGCGAGAGAAGCTAAGGTTCAACAAAAG-TATGAAGAACTACA
75731569 GCT
64 GCT
* ** *
75731572 ACAACTTAAAGCAGATGCGGCTGCGAGAGAAGCTAAGGTTCAACGGAAGTATGAAGAACTCCAGC
1 ACAACTTAAAGCAGAGGCGGCTGCGAGAGAAGCTAAGGTTCAACAAAAGTATGAAGAACTACAGC
75731637 T
66 T
* * *
75731638 GCAGCTTAAAGCAGAGGCGGCAGCGAGAGAAG
1 ACAACTTAAAGCAGAGGCGGCTGCGAGAGAAG
75731670 TAGAGGCTGC
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
65 1 0.01
66 81 0.95
67 3 0.04
ACGTcount: A:0.38, C:0.18, G:0.29, T:0.14
Consensus pattern (66 bp):
ACAACTTAAAGCAGAGGCGGCTGCGAGAGAAGCTAAGGTTCAACAAAAGTATGAAGAACTACAGC
T
Found at i:75731690 original size:21 final size:21
Alignment explanation
Indices: 75731650--75731690 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
75731640 AGCTTAAAGC
*
75731650 AGAGGCGGCAGCGAGAGAAGT
1 AGAGGCGGCAGCAAGAGAAGT
* *
75731671 AGAGGCTGCAGCAAGGGAAG
1 AGAGGCGGCAGCAAGAGAAG
75731691 CAGACCAGCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.15, G:0.46, T:0.05
Consensus pattern (21 bp):
AGAGGCGGCAGCAAGAGAAGT
Found at i:75731822 original size:19 final size:19
Alignment explanation
Indices: 75731798--75731835 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
75731788 GTAAATATTT
*
75731798 TTATCATTTTGACTTTTAA
1 TTATCATTTTAACTTTTAA
75731817 TTATCATTTTAACTTTTAA
1 TTATCATTTTAACTTTTAA
75731836 CATTTTTGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.11, G:0.03, T:0.58
Consensus pattern (19 bp):
TTATCATTTTAACTTTTAA
Found at i:75732119 original size:43 final size:43
Alignment explanation
Indices: 75732030--75732131 Score: 114
Period size: 43 Copynumber: 2.3 Consensus size: 43
75732020 GTTTTTTTAA
* * *
75732030 AAAAGCGCCGCTAAAGGTCAAGGTCTTTAGCGGCATTTGTAAG
1 AAAAGCGCCGCTAAAAGTCAAGGTCTTTAGCGACATTTGGAAG
* * * **
75732073 AAAAGTGCCGCTAAAAGTCATGGTCTTTAGCGACGTTTGGGGG
1 AAAAGCGCCGCTAAAAGTCAAGGTCTTTAGCGACATTTGGAAG
*
75732116 AAAAAGCGCCACTAAA
1 -AAAAGCGCCGCTAAA
75732132 GAGCGCCGCT
Statistics
Matches: 48, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
43 35 0.73
44 13 0.27
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.22
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAAGTCAAGGTCTTTAGCGACATTTGGAAG
Found at i:75732200 original size:43 final size:43
Alignment explanation
Indices: 75732128--75732420 Score: 297
Period size: 43 Copynumber: 6.8 Consensus size: 43
75732118 AAAGCGCCAC
* *
75732128 TAAAGAGCGCCGCTAAAAGGTCGTGGTCTTTAGCGGCGTTTG-TGG
1 TAAA-AGCGCCGCT-AAAGGTCATGGTCTTTAGCGGCGTTTGAT-A
* *
75732173 TAGAAGCGCCGCTAAAGG-CTATGGTCTTTAGAGGCGTTTGATA
1 TAAAAGCGCCGCTAAAGGTC-ATGGTCTTTAGCGGCGTTTGATA
* * *
75732216 TAAAAGTGCCGCCAAAAGTCATGGTCTTTAGCGGCGTTTGATA
1 TAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGATA
* *
75732259 TAAAAGTGCCGCTAAAAGTCATGGTCTTTAGCGGCGTTTGATA
1 TAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGATA
* * *
75732302 TAAAAGCGCCACTAAAAGTCATGGTCTTTAGCGGCATTTG-TA
1 TAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGATA
* * * ** * *
75732344 GGAAAAGTGCCGCTAAA-GACAATGACCTTTAGCGGTGTTTGTTA
1 -TAAAAGCGCCGCTAAAGGTC-ATGGTCTTTAGCGGCGTTTGATA
* * **
75732388 GAGAAGCGCCGCTAAAGGTCATGACCTTTAGCG
1 TAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCG
75732421 ATGTTTTTTT
Statistics
Matches: 217, Mismatches: 24, Indels: 16
0.84 0.09 0.06
Matches are distributed among these distances:
42 5 0.02
43 194 0.89
44 15 0.07
45 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (43 bp):
TAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGATA
Done.