Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 224 of 235
Found at i:75735717 original size:30 final size:30
Alignment explanation
Indices: 75735673--75735734 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
75735663 CTGGCACATA
* *
75735673 GGTGTGTGTTCAGCCCGTGTGGCTCACACG
1 GGTGAGTGTCCAGCCCGTGTGGCTCACACG
75735703 GGTGAGTGTCCAGCCCGTGTGGCTCACACG
1 GGTGAGTGTCCAGCCCGTGTGGCTCACACG
75735733 GG
1 GG
75735735 CATGTGCCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.11, C:0.27, G:0.39, T:0.23
Consensus pattern (30 bp):
GGTGAGTGTCCAGCCCGTGTGGCTCACACG
Found at i:75735748 original size:30 final size:30
Alignment explanation
Indices: 75735678--75735754 Score: 104
Period size: 30 Copynumber: 2.6 Consensus size: 30
75735668 ACATAGGTGT
* *
75735678 GTGTTCAGCCCGTGTGGCTCACACGGGTGA
1 GTGTCCAGCCCGTGTGGCTCACACGGGTCA
75735708 GTGTCCAGCCCGTGTGGCTCACACGGG-CA
1 GTGTCCAGCCCGTGTGGCTCACACGGGTCA
75735737 -TGTGCCTAGCCCGTGTGG
1 GTGT-CC-AGCCCGTGTGG
75735755 AAATGCTCAG
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
28 3 0.07
29 3 0.07
30 37 0.86
ACGTcount: A:0.12, C:0.30, G:0.36, T:0.22
Consensus pattern (30 bp):
GTGTCCAGCCCGTGTGGCTCACACGGGTCA
Found at i:75736588 original size:11 final size:10
Alignment explanation
Indices: 75736572--75736598 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
75736562 TAATAATCAA
75736572 TTTTTTTATT
1 TTTTTTTATT
75736582 TTTTTTTATT
1 TTTTTTTATT
75736592 TTTTTTT
1 TTTTTTT
75736599 CTAGAACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.07, C:0.00, G:0.00, T:0.93
Consensus pattern (10 bp):
TTTTTTTATT
Found at i:75737618 original size:18 final size:18
Alignment explanation
Indices: 75737592--75737643 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
75737582 ACTAATAACA
*
75737592 AAAAT-AAAAACAAAAAG
1 AAAATGAAAAAGAAAAAG
* *
75737609 AAAATGAAAATGAAAATG
1 AAAATGAAAAAGAAAAAG
*
75737627 AAAACGAAAAAGAAAAA
1 AAAATGAAAAAGAAAAA
75737644 ATAAACTCAA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
17 5 0.18
18 23 0.82
ACGTcount: A:0.77, C:0.04, G:0.12, T:0.08
Consensus pattern (18 bp):
AAAATGAAAAAGAAAAAG
Found at i:75737635 original size:6 final size:6
Alignment explanation
Indices: 75737603--75737642 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
75737593 AAATAAAAAC
* * *
75737603 AAAAAG AAAATG AAAATG AAAATG AAAACG AAAAAG AAAA
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAA
75737643 AATAAACTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.75, C:0.03, G:0.15, T:0.07
Consensus pattern (6 bp):
AAAATG
Found at i:75737643 original size:6 final size:6
Alignment explanation
Indices: 75737591--75737643 Score: 52
Period size: 6 Copynumber: 8.8 Consensus size: 6
75737581 AACTAATAAC
* * * * * *
75737591 AAAAAT AAAAAC AAAAAG AAAATG AAAATG AAAATG AAAACG AAAAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
75737639 AAAAA
1 AAAAA
75737644 ATAAACTCAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.77, C:0.04, G:0.11, T:0.08
Consensus pattern (6 bp):
AAAAAG
Found at i:75737765 original size:10 final size:10
Alignment explanation
Indices: 75737750--75737851 Score: 54
Period size: 10 Copynumber: 9.7 Consensus size: 10
75737740 GCACAAATAA
75737750 AAATAAAAAT
1 AAATAAAAAT
75737760 AAATAAGAAAAT
1 AAAT-A-AAAAT
*
75737772 AGATCAAATAAT
1 AAAT-AAA-AAT
75737784 ATATATAAAAAT
1 A-A-ATAAAAAT
75737796 --ATAAAAAT
1 AAATAAAAAT
75737804 -AATAATAAAAT
1 AAAT-A-AAAAT
75737815 AAATAAAGAA-
1 AAATAAA-AAT
75737825 AAAT-AAAAT
1 AAATAAAAAT
75737834 AACAT-AAAAT
1 AA-ATAAAAAT
75737844 AAAATAAA
1 -AAATAAA
75737852 GAAAAGGGTA
Statistics
Matches: 75, Mismatches: 3, Indels: 27
0.71 0.03 0.26
Matches are distributed among these distances:
8 10 0.13
9 6 0.08
10 20 0.27
11 15 0.20
12 19 0.25
13 3 0.04
14 2 0.03
ACGTcount: A:0.74, C:0.02, G:0.03, T:0.22
Consensus pattern (10 bp):
AAATAAAAAT
Found at i:75737771 original size:24 final size:22
Alignment explanation
Indices: 75737744--75737842 Score: 81
Period size: 25 Copynumber: 4.0 Consensus size: 22
75737734 ATCTAAGCAC
75737744 AAATAAAAATAAAAATAAATAAGA
1 AAATAAAAAT-AAAATAAATAA-A
* *
75737768 AAATAGATCAAATAATATATATAAA
1 AAATA-A--AAATAAAATAAATAAA
75737793 AATATAAAAATAATAATAAAATAAA
1 AA-ATAAAAATAA-AAT-AAATAAA
*
75737818 TAAAGAAAAATAAAATAACATAAA
1 -AAATAAAAATAAAATAA-ATAAA
75737842 A
1 A
75737843 TAAAATAAAG
Statistics
Matches: 62, Mismatches: 5, Indels: 17
0.74 0.06 0.20
Matches are distributed among these distances:
23 9 0.15
24 15 0.24
25 20 0.32
26 14 0.23
27 4 0.06
ACGTcount: A:0.74, C:0.02, G:0.03, T:0.21
Consensus pattern (22 bp):
AAATAAAAATAAAATAAATAAA
Found at i:75737817 original size:5 final size:5
Alignment explanation
Indices: 75737799--75737851 Score: 65
Period size: 5 Copynumber: 10.6 Consensus size: 5
75737789 TAAAAATATA
*
75737799 AAAAT AATAAT AAAAT -AAAT AAAGA- AAAAT AAAAT AACAT AAAAT AAAAT
1 AAAAT AA-AAT AAAAT AAAAT AAA-AT AAAAT AAAAT AAAAT AAAAT AAAAT
75737849 AAA
1 AAA
75737852 GAAAAGGGTA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
4 5 0.12
5 31 0.74
6 6 0.14
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:75737818 original size:23 final size:23
Alignment explanation
Indices: 75737676--75737847 Score: 74
Period size: 23 Copynumber: 7.4 Consensus size: 23
75737666 AATTAAAGGT
* *
75737676 AATAGTAAGAATAATAGTAAAA-A
1 AATA-TAAAAATAATAATAAAATA
75737699 AATACTAAAAATAATATAATTAAAATA
1 AATA-TAAAAAT-A-ATAA-TAAAATA
* * *
75737726 AA-ATTAAAAT-CTAAGCACAAATA
1 AATATAAAAATAATAA-TA-AAATA
* *
75737749 AAAATAAAAAT-A-AATAAGA-A
1 AATATAAAAATAATAATAAAATA
* * *
75737769 AATAGATCAAATAATATATATAA-A
1 AATATA-AAAATAATA-ATAAAATA
75737793 AATATAAAAATAATAATAAAATA
1 AATATAAAAATAATAATAAAATA
* *
75737816 AATAAAGAAAAATAA-AATAACATA
1 AAT--ATAAAAATAATAATAAAATA
75737840 AA-ATAAAA
1 AATATAAAA
75737848 TAAAGAAAAG
Statistics
Matches: 114, Mismatches: 22, Indels: 28
0.70 0.13 0.17
Matches are distributed among these distances:
20 5 0.04
21 11 0.10
22 11 0.10
23 32 0.28
24 28 0.25
25 18 0.16
26 6 0.05
27 3 0.03
ACGTcount: A:0.70, C:0.03, G:0.04, T:0.23
Consensus pattern (23 bp):
AATATAAAAATAATAATAAAATA
Found at i:75737820 original size:29 final size:29
Alignment explanation
Indices: 75737744--75737856 Score: 92
Period size: 30 Copynumber: 3.9 Consensus size: 29
75737734 ATCTAAGCAC
75737744 AAATAAAAATAAAAATAAAT-AAG-AAAAT-
1 AAAT-AAAAT-AAAATAAATAAAGAAAAATA
* * * * *
75737772 AGATCAAATAATATATAT-AA-AAATATAA
1 AAATAAAATAAAATAAATAAAGAAAAAT-A
75737800 AAATAATAATAAAATAAATAAAGAAAAATA
1 AAATAA-AATAAAATAAATAAAGAAAAATA
*
75737830 AAATAACATAAAATAAAATAAAGAAAA
1 AAATAAAATAAAAT-AAATAAAGAAAA
75737857 GGGTAAAAGG
Statistics
Matches: 67, Mismatches: 11, Indels: 12
0.74 0.12 0.13
Matches are distributed among these distances:
26 13 0.19
27 4 0.06
28 7 0.10
29 17 0.25
30 21 0.31
31 5 0.07
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.20
Consensus pattern (29 bp):
AAATAAAATAAAATAAATAAAGAAAAATA
Found at i:75745488 original size:13 final size:13
Alignment explanation
Indices: 75745472--75745522 Score: 66
Period size: 13 Copynumber: 3.9 Consensus size: 13
75745462 TAAACCAAAT
*
75745472 TTTTCAAAAGTAC
1 TTTTCAAAAGCAC
* *
75745485 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
*
75745498 TTTTCAAAAACAC
1 TTTTCAAAAGCAC
75745511 TTTTCAAAAGCA
1 TTTTCAAAAGCA
75745523 ATGAAGAACT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:75746861 original size:53 final size:53
Alignment explanation
Indices: 75746780--75746886 Score: 187
Period size: 53 Copynumber: 2.0 Consensus size: 53
75746770 TAGAACTTCT
* * *
75746780 TACATTAACAACAATACACATATTAATCGAGTTAAAACTCAATTTGTAATTTG
1 TACATTAACAACAATACACATATCAATCGAGTTAAAACTCAATTCGCAATTTG
75746833 TACATTAACAACAATACACATATCAATCGAGTTAAAACTCAATTCGCAATTTG
1 TACATTAACAACAATACACATATCAATCGAGTTAAAACTCAATTCGCAATTTG
75746886 T
1 T
75746887 TACTTAAATA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.32
Consensus pattern (53 bp):
TACATTAACAACAATACACATATCAATCGAGTTAAAACTCAATTCGCAATTTG
Found at i:75748862 original size:25 final size:26
Alignment explanation
Indices: 75748814--75748864 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
75748804 AATAATTTTT
*
75748814 ATTTTTAAAAGTATTAAAATATTATA
1 ATTTTTAAAAGTATTAAAACATTATA
* *
75748840 ATTTTTAATATTATT-AAACATTATA
1 ATTTTTAAAAGTATTAAAACATTATA
75748865 TTTAATTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (26 bp):
ATTTTTAAAAGTATTAAAACATTATA
Found at i:75749031 original size:15 final size:15
Alignment explanation
Indices: 75749007--75749039 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
75748997 ATTCAATATT
*
75749007 AATATTTTAATAATA
1 AATATATTAATAATA
75749022 AATATATTAATAATA
1 AATATATTAATAATA
75749037 AAT
1 AAT
75749040 GTTTTTGTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
AATATATTAATAATA
Found at i:75749334 original size:21 final size:21
Alignment explanation
Indices: 75749305--75749344 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
75749295 AATTTAATTT
*
75749305 TTTCTTTTATATTATTTTAAC
1 TTTCCTTTATATTATTTTAAC
* *
75749326 TTTCCTTTATTTTTTTTTA
1 TTTCCTTTATATTATTTTA
75749345 TTTTCCATTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.17, C:0.10, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTCCTTTATATTATTTTAAC
Found at i:75750480 original size:16 final size:15
Alignment explanation
Indices: 75750461--75750514 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 15
75750451 TTTTTTTGAA
75750461 TTTTAAAGATTTTTAT
1 TTTTAAA-ATTTTTAT
*
75750477 TTTTCATAAATTTTCATT
1 TTTT-A-AAATTTTTA-T
75750495 TTTTAAAATTTTTAT
1 TTTTAAAATTTTTAT
75750510 GTTTT
1 -TTTT
75750515 TAATGAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
15 1 0.03
16 16 0.50
17 8 0.25
18 7 0.22
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.65
Consensus pattern (15 bp):
TTTTAAAATTTTTAT
Found at i:75750515 original size:17 final size:16
Alignment explanation
Indices: 75750461--75750517 Score: 69
Period size: 17 Copynumber: 3.4 Consensus size: 16
75750451 TTTTTTTGAA
75750461 TTTTAAAGATTTTTATT
1 TTTTAAA-ATTTTTATT
* *
75750478 TTTCATAAATTTTCATT
1 TTTTA-AAATTTTTATT
75750495 TTTTAAAATTTTTATGT
1 TTTTAAAATTTTTAT-T
75750512 TTTTAA
1 TTTTAA
75750518 TGAAAATATG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
16 9 0.26
17 23 0.68
18 2 0.06
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.63
Consensus pattern (16 bp):
TTTTAAAATTTTTATT
Found at i:75752459 original size:26 final size:26
Alignment explanation
Indices: 75752430--75752520 Score: 85
Period size: 26 Copynumber: 3.5 Consensus size: 26
75752420 TTTTATTGTC
*
75752430 TTATATGTTATTTATTTTAAATTGCT
1 TTATATATTATTTATTTTAAATTGCT
* * *
75752456 TTATGTATTATTTATTTTAATTTGTT
1 TTATATATTATTTATTTTAAATTGCT
* ** * *
75752482 TTACATACAATTTACTTCAAATTG-T
1 TTATATATTATTTATTTTAAATTGCT
75752507 TCTATATATTATTT
1 T-TATATATTATTT
75752521 TGTTTCGTTT
Statistics
Matches: 50, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
25 2 0.04
26 48 0.96
ACGTcount: A:0.29, C:0.07, G:0.05, T:0.59
Consensus pattern (26 bp):
TTATATATTATTTATTTTAAATTGCT
Found at i:75771413 original size:88 final size:87
Alignment explanation
Indices: 75771255--75771430 Score: 259
Period size: 88 Copynumber: 2.0 Consensus size: 87
75771245 TAGAAAACCC
75771255 AATCGAATATTAAAAATAACCAAACACACCCCAAGCTAAATTTTATCATCAAATTTGAATTTAAA
1 AATCGAATATTAAAAATAACCAAACACACCCCAAGCTAAATTTTATCATCAAATTTGAATTT-AA
*
75771320 TTATTTTTATTATATTAAAATAT
65 CTATTTTTATTATATTAAAATAT
* *
75771343 AATCGAATATTAAAAATAACCAAACACACCCCAAGCTAAATTTTATCATC-GATCTCCTG-CTTC
1 AATCGAATATTAAAAATAACCAAACACACCCCAAGCTAAATTTTATCATCAAAT-T--TGAATT-
75771406 T-ACTATTTTTATTATATTAAAATAT
62 TAACTATTTTTATTATATTAAAATAT
75771431 TTTATATTAT
Statistics
Matches: 81, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
87 2 0.02
88 74 0.91
89 2 0.02
90 3 0.04
ACGTcount: A:0.43, C:0.17, G:0.04, T:0.36
Consensus pattern (87 bp):
AATCGAATATTAAAAATAACCAAACACACCCCAAGCTAAATTTTATCATCAAATTTGAATTTAAC
TATTTTTATTATATTAAAATAT
Found at i:75789015 original size:34 final size:34
Alignment explanation
Indices: 75788972--75789040 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
75788962 AAATAATTTT
* *
75788972 GAACAACACAAATCTATGAAGCAAAATTCAAATA
1 GAACAACACAAATCTACGAAGAAAAATTCAAATA
75789006 GAACAACACAAATCTACGAAGAAAAATTCAAATA
1 GAACAACACAAATCTACGAAGAAAAATTCAAATA
75789040 G
1 G
75789041 CTTTCTTCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.57, C:0.17, G:0.10, T:0.16
Consensus pattern (34 bp):
GAACAACACAAATCTACGAAGAAAAATTCAAATA
Found at i:75793959 original size:26 final size:26
Alignment explanation
Indices: 75793908--75794302 Score: 183
Period size: 26 Copynumber: 15.2 Consensus size: 26
75793898 TGTTATTCAT
*
75793908 TTATTTATTTTAAACCTTTTTCTTATATA
1 TTATTTATTTTAAA--TTGTT-TTATATA
*
75793937 TTATTTATTTTAAATTATTTTAT-TA
1 TTATTTATTTTAAATTGTTTTATATA
* * * *
75793962 TTATTTATTTCT-AGTT-TTCTACATG
1 TTATTTATTT-TAAATTGTTTTATATA
* * * * * *
75793987 TCATGTATTTTAAACTATTTCAATCTA
1 TTATTTATTTTAAATTGTTT-TATATA
** *
75794014 TTATCCA-TTT---TT-TTATATATA
1 TTATTTATTTTAAATTGTTTTATATA
* * *
75794035 TTATTTATTTGTATACTGTTATATATA
1 TTATTTATTT-TAAATTGTTTTATATA
*
75794062 TTATTTATTTTGAATTGTTTTTATATACA
1 TTATTTATTTTAAATTG-TTTTATAT--A
* * * *
75794091 TCATTTATTTTTTTAAACTATTTTGTATA
1 TTATTTA---TTTTAAATTGTTTTATATA
* *
75794120 TTATTTATTTGAAAATTCTTTT-TGCATA
1 TTATTTATTT-TAAATTGTTTTAT--ATA
*
75794148 TTATTTATTTTAAA--CTTTT-TATA
1 TTATTTATTTTAAATTGTTTTATATA
* * *
75794171 -TA-TTATTTTAAATTGTCTAATATG
1 TTATTTATTTTAAATTGTTTTATATA
* * *
75794195 TTATTTATTTTAAATTGCTTTGTGTA
1 TTATTTATTTTAAATTGTTTTATATA
* *
75794221 TTATTTATTTTAATTTGTTTTACATA
1 TTATTTATTTTAAATTGTTTTATATA
* *
75794247 TTATTTACTTTAAATT-ATTT-TATA
1 TTATTTATTTTAAATTGTTTTATATA
* * * *
75794271 TTATTCACTTCAAATTGTTCTATATA
1 TTATTTATTTTAAATTGTTTTATATA
75794297 TTATTT
1 TTATTT
75794303 TGTTTCGTTT
Statistics
Matches: 277, Mismatches: 62, Indels: 57
0.70 0.16 0.14
Matches are distributed among these distances:
21 19 0.07
22 6 0.02
23 7 0.03
24 25 0.09
25 39 0.14
26 79 0.29
27 47 0.17
28 13 0.05
29 28 0.10
31 7 0.03
32 7 0.03
ACGTcount: A:0.29, C:0.07, G:0.04, T:0.60
Consensus pattern (26 bp):
TTATTTATTTTAAATTGTTTTATATA
Found at i:75794083 original size:58 final size:54
Alignment explanation
Indices: 75794020--75794178 Score: 162
Period size: 58 Copynumber: 2.9 Consensus size: 54
75794010 TCTATTATCC
* * *
75794020 ATTTTTTTATATATATTATTTATTTGTATACTGTTATATATATTATTTATTTTG-AA
1 ATTTTTTTATACATATTATTTATTT-TAAACT-TTTTATATATTATTTA-TTTGAAA
* *
75794076 TTGTTTTTATATACATCATTTATTT-TTTTAAACTATTTTGTATATTATTTATTTGAAA
1 AT-TTTTT-TATACAT-A-TTATTTATTTTAAACT-TTTTATATATTATTTATTTGAAA
* *
75794134 ATTCTTTT-TGCATATTATTTATTTTAAACTTTTTATATATTATTT
1 ATTTTTTTATACATATTATTTATTTTAAACTTTTTATATATTATTT
75794179 TAAATTGTCT
Statistics
Matches: 87, Mismatches: 10, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
53 20 0.23
54 10 0.11
55 4 0.05
56 2 0.02
57 13 0.15
58 28 0.32
59 4 0.05
60 6 0.07
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.62
Consensus pattern (54 bp):
ATTTTTTTATACATATTATTTATTTTAAACTTTTTATATATTATTTATTTGAAA
Found at i:75794086 original size:27 final size:28
Alignment explanation
Indices: 75794024--75794178 Score: 81
Period size: 27 Copynumber: 5.6 Consensus size: 28
75794014 TTATCCATTT
75794024 TTTTATATATATTATTTATTTGTATACTG
1 TTTT-TATATATTATTTATTTGTATACTG
* *
75794053 -TTATATATATTATTTATTT-TGA-ATTG
1 TTTTTATATATTATTTATTTGT-ATACTG
* * *
75794079 TTTTTATATACATCATTTATTTTTTTAAACT-
1 TTTTTATAT--ATTATTTA--TTTGTATACTG
* * * * * *
75794110 ATTTTGTATATTATTTATTTGAAAATTC
1 TTTTTATATATTATTTATTTGTATACTG
** *
75794138 TTTTTGCATATTATTTATTT-TAAAC--
1 TTTTTATATATTATTTATTTGTATACTG
75794163 TTTTTATATATTATTT
1 TTTTTATATATTATTT
75794179 TAAATTGTCT
Statistics
Matches: 100, Mismatches: 17, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
25 14 0.14
26 4 0.04
27 34 0.34
28 20 0.20
29 14 0.14
31 11 0.11
32 3 0.03
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.62
Consensus pattern (28 bp):
TTTTTATATATTATTTATTTGTATACTG
Found at i:75794193 original size:22 final size:21
Alignment explanation
Indices: 75794152--75794200 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
75794142 TGCATATTAT
*
75794152 TTATTTTAAACTTTTTATATA
1 TTATTTTAAACTTTTAATATA
*
75794173 TTATTTTAAA-TTGTCTAATATG
1 TTATTTTAAACTT-T-TAATATA
75794195 TTATTT
1 TTATTT
75794201 ATTTTAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 2 0.08
21 11 0.46
22 11 0.46
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (21 bp):
TTATTTTAAACTTTTAATATA
Found at i:75794223 original size:101 final size:97
Alignment explanation
Indices: 75794095--75794275 Score: 231
Period size: 99 Copynumber: 1.8 Consensus size: 97
75794085 TATACATCAT
* * *
75794095 TTATTTTTTTAAACTATTTTGTATATTATTTATTTGAAAATTCT-TTTTGCATATTATTTATTTT
1 TTATTTTTTTAAACTACTTTGTATATTATTTATTT--AAATT-TGTTTTACATATTATTTACTTT
75794159 AAACTT-TTTATATATTATTTTAAATTGTCTAATATG
63 AAA-TTATTT-TATATTATTTTAAATTGTCTAATATG
* * * *
75794195 TTATTTATTTTAAATTGCTTTGTGTATTATTTATTTTAATTTGTTTTACATATTATTTACTTTAA
1 TTATTT-TTTTAAACTACTTTGTATATTATTTATTTAAATTTGTTTTACATATTATTTACTTTAA
75794260 ATTATTTTATATTATT
65 ATTATTTTATATTATT
75794276 CACTTCAAAT
Statistics
Matches: 71, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
98 12 0.17
99 28 0.39
100 6 0.08
101 25 0.35
ACGTcount: A:0.29, C:0.04, G:0.05, T:0.62
Consensus pattern (97 bp):
TTATTTTTTTAAACTACTTTGTATATTATTTATTTAAATTTGTTTTACATATTATTTACTTTAAA
TTATTTTATATTATTTTAAATTGTCTAATATG
Found at i:75794251 original size:52 final size:50
Alignment explanation
Indices: 75794095--75794302 Score: 135
Period size: 50 Copynumber: 4.1 Consensus size: 50
75794085 TATACATCAT
* *
75794095 TTATTT-TTTTAAACTAT-TTTGTATATTATTTATTTGAAAATTCT-TTTTGCATA
1 TTATTTATTTTAAA-T-TCTTTGT-TATTATTTATTT--TAATT-TGTTTTACATA
* * * * *
75794148 TTATTTATTTTAAA--CTTT-TTA-TATATTATTTTAAATTGTCTAATATG
1 TTATTTATTTTAAATTCTTTGTTATTAT-TTATTTTAATTTGTTTTACATA
75794195 TTATTTATTTTAAATTGCTTTGTGTATTATTTATTTTAATTTGTTTTACATA
1 TTATTTATTTTAAATT-CTTTGT-TATTATTTATTTTAATTTGTTTTACATA
* * * * * * * *
75794247 TTATTTACTTTAAATTATTT-TATATTATTCACTTCAAATTGTTCTATATA
1 TTATTTATTTTAAATTCTTTGT-TATTATTTATTTTAATTTGTTTTACATA
75794297 TTATTT
1 TTATTT
75794303 TGTTTCGTTT
Statistics
Matches: 124, Mismatches: 21, Indels: 23
0.74 0.12 0.14
Matches are distributed among these distances:
46 1 0.01
47 21 0.17
48 3 0.02
49 8 0.06
50 34 0.27
51 7 0.06
52 34 0.27
53 9 0.07
54 7 0.06
ACGTcount: A:0.29, C:0.06, G:0.05, T:0.61
Consensus pattern (50 bp):
TTATTTATTTTAAATTCTTTGTTATTATTTATTTTAATTTGTTTTACATA
Found at i:75800381 original size:45 final size:44
Alignment explanation
Indices: 75800277--75800938 Score: 341
Period size: 44 Copynumber: 14.6 Consensus size: 44
75800267 CATATCAAAC
* * ** * * * *
75800277 CTTATCTCCTTGAAGTTACAGTGGAGTAGGTTTAAGTTACTAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATACTAAT
* * *
75800321 CTTATCTCCTTGAAGTTGCAGTGGAAAAGATTGAAGATAGCGAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATA-CTAAT
* *
75800366 CTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATTATAGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAG--AT--A--CTA-AT
* * * * * *
75800417 CTTATCTCTCTAAAGTTGCAGTAGAGCAGA-TCATG-T-C-AAT
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATACTAAT
* * * * *
75800457 CATTATCTCCTTGAAGTTGCAGTGGAGCAGGTTGAAGTTACTAGT
1 C-TTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATACTAAT
* ** *
75800502 CTTATCTCCCTGAAGTTACAGTGGAGTAGATTGAAGATAGCGAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATA-CTAAT
* ** * *
75800547 CTTATTTCCCTGAAGTTGCAGTAAAATAGATTGAAGCTATAAATTATAGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAG--AT--A--CTA-AT
* * * * * * * * *
75800598 CTTATCTCTCTGAAGTCGCAATAGAGCAGA-T-CATAT-CAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATACTAAT
* * * * *
75800639 CTTATCTCCCTGAAGTTGTAGT-GAAGTAGGTTGAAGTTACTAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAA-CAGATTGAAGATACTAAT
* * * *
75800683 CTTATCTCCCTGAAGTTGCAGTGCAGCAGACTGAAGATAGCGAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATA-CTAAT
* * *
75800728 CTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAATTATGGCAGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATAC------T---A-AT
* * * ** * **
75800782 CTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAGC
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATACTAAT
** * * *
75800826 CTTATCTCCCTGAAGTTGTGGTGGAGCAGACTGAAGATACCAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATACTAAT
* * * * *
75800870 CTTATCTCCCTGAAGTTACAGTGGAGCAAATTAAAGCTACTAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATACTAAT
* *
75800914 CCTATCTCTCTGAAGTTGCAGTGGA
1 CTTATCTCCCTGAAGTTGCAGTGGA
75800939 GCGAATTGAA
Statistics
Matches: 468, Mismatches: 115, Indels: 70
0.72 0.18 0.11
Matches are distributed among these distances:
40 5 0.01
41 46 0.10
42 5 0.01
43 3 0.01
44 193 0.41
45 111 0.24
47 7 0.01
49 3 0.01
50 6 0.01
51 52 0.11
53 1 0.00
54 36 0.08
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATACTAAT
Found at i:75800492 original size:92 final size:91
Alignment explanation
Indices: 75800363--75800812 Score: 320
Period size: 92 Copynumber: 4.9 Consensus size: 91
75800353 GAAGATAGCG
* *
75800363 AATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATTATAGATCTTATCTCTCT
1 AATCTTATCTCCCTGAAGTTGCAGTGAAACAGATTGAAGCTATAAATTATAGATCTTATCTCTCT
*
75800428 AAAGTTGCAGTAGAGCAGATCATGTC
66 GAAGTTGCAGTAGAGCAGATCATGTC
* * * * * *
75800454 AATCATTATCTCCTTGAAGTTGCAGTGGAGCAGGTTGAAG-T-T--A--CTAG-TCTTATCTCCC
1 AATC-TTATCTCCCTGAAGTTGCAGTGAAACAGATTGAAGCTATAAATTATAGATCTTATCTCTC
* * * * *
75800512 TGAAGTTACAGTGGAGTAGATTGAAGATAGC
65 TGAAGTTGCAGTAGAGCAGA-TCATG-T--C
* * *
75800543 GAATCTTATTTCCCTGAAGTTGCAGTAAAATAGATTGAAGCTATAAATTATAGATCTTATCTCTC
1 -AATCTTATCTCCCTGAAGTTGCAGTGAAACAGATTGAAGCTATAAATTATAGATCTTATCTCTC
* * *
75800608 TGAAGTCGCAATAGAGCAGATCATATC
65 TGAAGTTGCAGTAGAGCAGATCATGTC
* * ** * * *
75800635 AAACCTTATCTCCCTGAAGTTGTAGTGAAGTAGGTTGAAG-T-T--A--CTAG-TCTTATCTCCC
1 -AATCTTATCTCCCTGAAGTTGCAGTGAAACAGATTGAAGCTATAAATTATAGATCTTATCTCTC
* *
75800693 TGAAGTTGCAGT-GCAGCAGACTGAAGATAGC
65 TGAAGTTGCAGTAG-AGCAGA-TCATG-T--C
* * * *
75800724 GAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAATTATGGCAGATCTTATCT
1 -AATCTTATCTCCCTGAAGTTGCAGTGAAACAGATTGAAGCTATAAATTAT---AGATCTTATCT
* *
75800789 -TCCTGAAGTTACAGTGGAGCAGAT
62 CT-CTGAAGTTGCAGTAGAGCAGAT
75800813 TGAAGCCACC
Statistics
Matches: 273, Mismatches: 56, Indels: 53
0.71 0.15 0.14
Matches are distributed among these distances:
84 1 0.00
85 52 0.19
86 11 0.04
87 2 0.01
88 2 0.01
89 61 0.22
90 8 0.03
91 7 0.03
92 65 0.24
93 2 0.01
94 1 0.00
95 6 0.02
96 25 0.09
98 3 0.01
99 26 0.10
100 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (91 bp):
AATCTTATCTCCCTGAAGTTGCAGTGAAACAGATTGAAGCTATAAATTATAGATCTTATCTCTCT
GAAGTTGCAGTAGAGCAGATCATGTC
Found at i:75800567 original size:181 final size:181
Alignment explanation
Indices: 75800263--75800938 Score: 845
Period size: 181 Copynumber: 3.7 Consensus size: 181
75800253 GATGGATTGA
* * * *
75800263 AGATCATATCAAACCTTATCTCCTTGAAGTTACAGTGGAGTAGGTTTAAGTTACTAGTCTTATCT
1 AGATCATATCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACTAGTCTTATCT
* * **
75800328 CCTTGAAGTTGCAGTGGAAAAGATTGAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAAC
66 CCCTGAAGTTACAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAAC
*
75800393 AGATTGAAGCTATAAATTATAGATCTTATCTCTCTAAAGTTGCAGTAGAGC
131 AGATTGAAGCTATAAATTATAGATCTTATCTCTCTGAAGTTGCAGTAGAGC
* * * *
75800444 AGATCATGTCAATCATTATCTCCTTGAAGTTGCAGTGGAGCAGGTTGAAGTTACTAGTCTTATCT
1 AGATCATATCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACTAGTCTTATCT
* ** *
75800509 CCCTGAAGTTACAGTGGAGTAGATTGAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTAAAAT
66 CCCTGAAGTTACAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAAC
* *
75800574 AGATTGAAGCTATAAATTATAGATCTTATCTCTCTGAAGTCGCAATAGAGC
131 AGATTGAAGCTATAAATTATAGATCTTATCTCTCTGAAGTTGCAGTAGAGC
* * *
75800625 AGATCATATCAAACCTTATCTCCCTGAAGTTGTAGTGAAGTAGGTTGAAGTTACTAGTCTTATCT
1 AGATCATATCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACTAGTCTTATCT
* * *
75800690 CCCTGAAGTTGCAGTGCAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAAC
66 CCCTGAAGTTACAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAAC
* * * *
75800755 AGATTAAAGCTACAAATTATGGCAGATCTTATCT-TCCTGAAGTTACAGTGGAGC
131 AGATTGAAGCTATAAATTAT---AGATCTTATCTCT-CTGAAGTTGCAGTAGAGC
* * * ** ** * * *
75800809 AGATTGA-AGCCACCAGCCTTATCTCCCTGAAGTTGTGGTGGAGCAGACTGAAGATACCAATCTT
1 AGA-TCATA-TCA--AACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACTAGTCTT
* * * * * * *
75800873 ATCTCCCTGAAGTTACAGTGGAGCAAATTAAAGCTA-CTAATCCTATCTCTCTGAAGTTGCAGTG
62 ATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTG
75800937 GA
127 GA
75800939 GCGAATTGAA
Statistics
Matches: 430, Mismatches: 57, Indels: 11
0.86 0.11 0.02
Matches are distributed among these distances:
181 299 0.70
183 1 0.00
184 29 0.07
185 4 0.01
186 26 0.06
187 71 0.17
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (181 bp):
AGATCATATCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACTAGTCTTATCT
CCCTGAAGTTACAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAAC
AGATTGAAGCTATAAATTATAGATCTTATCTCTCTGAAGTTGCAGTAGAGC
Found at i:75801222 original size:25 final size:26
Alignment explanation
Indices: 75801176--75801224 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
75801166 AATCAGACAG
75801176 CCCAAATACAAACTAAAACCCAATAA
1 CCCAAATACAAACTAAAACCCAATAA
* * *
75801202 CCCAAA-ACTAACTTAAGCCCAAT
1 CCCAAATACAAACTAAAACCCAAT
75801225 TAGCCTAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 14 0.70
26 6 0.30
ACGTcount: A:0.51, C:0.33, G:0.02, T:0.14
Consensus pattern (26 bp):
CCCAAATACAAACTAAAACCCAATAA
Found at i:75803943 original size:46 final size:45
Alignment explanation
Indices: 75803876--75804165 Score: 359
Period size: 46 Copynumber: 6.6 Consensus size: 45
75803866 TTTGAGTACT
*
75803876 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCATTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-TTAGCTACACTTA
*
75803922 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-TTAGCTACACTTA
*
75803968 TCTGATCAAGTGAAAAAGTGATAA---GT-GC-TA--T--ACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
* * *
75804004 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCCTTAGTTACATTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAG-CTTAGCTACACTTA
* * * *
75804050 TCTGATCAAGTGAGAAAGTGATAAGTGGTAGCCCTAGCTACTCCTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAG-CTTAGCTACACTTA
*
75804096 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
*
75804141 TCTGATC-AGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
75804166 ATCATATGTA
Statistics
Matches: 215, Mismatches: 19, Indels: 23
0.84 0.07 0.09
Matches are distributed among these distances:
36 28 0.13
38 1 0.00
39 1 0.00
40 3 0.01
41 1 0.00
42 4 0.02
43 14 0.07
44 6 0.03
45 19 0.09
46 138 0.64
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (45 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
Found at i:75804004 original size:36 final size:36
Alignment explanation
Indices: 75803958--75804030 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
75803948 GGTAGCTTTA
75803958 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* *
75803994 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
75804030 G
1 G
75804031 TTAGCCTTAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.29
Consensus pattern (36 bp):
GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
Found at i:75804010 original size:82 final size:81
Alignment explanation
Indices: 75803912--75804165 Score: 305
Period size: 82 Copynumber: 3.0 Consensus size: 81
75803902 GGTAGCATTA
* *
75803912 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAA
1 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAA
75803977 GTGAAAAAGTGATAAGT
65 GTGAAAAAGTGATAAGT
* * *
75803994 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGTTAGCCTTAGTTACATTTATCTGATCAA
1 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAG-CTTAGCTACACTTATCTGATCAA
*
75804059 GTGAGAAAGTGATAAGTGGT
65 GTGAAAAAGTGATAA---GT
*
75804079 AGCCCTAGCTACTCCTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCT
1 -G--CTA--TACT--TATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTATCT
* *
75804144 GATC-AG-GGACAAGTGATAAGT
59 GATCAAGTGAAAAAGTGATAAGT
75804165 G
1 G
75804166 ATCATATGTA
Statistics
Matches: 148, Mismatches: 13, Indels: 19
0.82 0.07 0.11
Matches are distributed among these distances:
82 72 0.49
83 1 0.01
85 3 0.02
86 3 0.02
88 3 0.02
89 10 0.07
90 6 0.04
91 18 0.12
92 32 0.22
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (81 bp):
GCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAAG
TGAAAAAGTGATAAGT
Found at i:75804104 original size:128 final size:128
Alignment explanation
Indices: 75803876--75804122 Score: 386
Period size: 128 Copynumber: 1.9 Consensus size: 128
75803866 TTTGAGTACT
*
75803876 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAAGAGACAAAGT
** *
75803941 GATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTATACTTA
66 GATAAGTGGTAGCCCTAGCTACACCTATCTGATCAAGTGAAAAAGTGATAAGTGCTATACTTA
* * * * * *
75804004 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCCTTAGTTACATTTATCTGATCAAGTGAGAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAAGAGACAAAGT
* *
75804069 GATAAGTGGTAGCCCTAGCTACTCCTATCTGATCAAGTGACAAAGTGATAAGTG
66 GATAAGTGGTAGCCCTAGCTACACCTATCTGATCAAGTGAAAAAGTGATAAGTG
75804123 GTAGCCTAGC
Statistics
Matches: 107, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
128 107 1.00
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (128 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAAGAGACAAAGT
GATAAGTGGTAGCCCTAGCTACACCTATCTGATCAAGTGAAAAAGTGATAAGTGCTATACTTA
Found at i:75804816 original size:17 final size:17
Alignment explanation
Indices: 75804763--75805114 Score: 196
Period size: 17 Copynumber: 19.8 Consensus size: 17
75804753 TTTTTAAAAG
75804763 AACACGAAAA-TTTTGA
1 AACACGAAAATTTTTGA
* *
75804779 AACACGAGATTTCTTTGA
1 AACACGAAAATT-TTTGA
*
75804797 AACACGAAAATTTATGA
1 AACACGAAAATTTTTGA
** *
75804814 AACACGGTCAATTTCTTAA
1 AACAC-GAAAATTT-TTGA
*
75804833 AACACGAAAGTTTTTGGA
1 AACACGAAAATTTTT-GA
**
75804851 AA-ACGGGAATTTTTTTTTTGA
1 AACAC--GAA---AATTTTTGA
*
75804872 AACACGAAAAATTTTGA
1 AACACGAAAATTTTTGA
*
75804889 AACACTG-GAA-TTTTGAA
1 AACAC-GAAAATTTTTG-A
** *
75804906 AACACGAGGATTTTTTA
1 AACACGAAAATTTTTGA
* *
75804923 AATACGAAAA-ATTTGAA
1 AACACGAAAATTTTTG-A
*
75804940 AACAAGAAAATTTTTGA
1 AACACGAAAATTTTTGA
* *
75804957 AATACGAAAATTTTAGA
1 AACACGAAAATTTTTGA
75804974 AACACGAAAATTTTTGA
1 AACACGAAAATTTTTGA
*
75804991 AACAC-AGAAGTTTTTAGAA
1 AACACGA-AAATTTTT-G-A
*
75805010 AACACGAAAAATTTTGA
1 AACACGAAAATTTTTGA
* **
75805027 AA-ATTGGAATTTTTTTGAA
1 AACA--CGAAAATTTTTG-A
*
75805046 AACACGAGAATTTTTGAAA
1 AACACGAAAATTTTTG--A
* *
75805065 AACATGAAAATTTTTGC
1 AACACGAAAATTTTTGA
**
75805082 AACACGGGAATTTTTGAA
1 AACACGAAAATTTTTG-A
75805100 AACACGAAAAATTTT
1 AACACG-AAAATTTT
75805115 CCGATTTTTN
Statistics
Matches: 254, Mismatches: 54, Indels: 53
0.70 0.15 0.15
Matches are distributed among these distances:
16 19 0.07
17 110 0.43
18 62 0.24
19 47 0.19
20 5 0.02
21 4 0.02
22 7 0.03
ACGTcount: A:0.45, C:0.11, G:0.14, T:0.30
Consensus pattern (17 bp):
AACACGAAAATTTTTGA
Found at i:75805066 original size:19 final size:18
Alignment explanation
Indices: 75804717--75805106 Score: 162
Period size: 17 Copynumber: 22.0 Consensus size: 18
75804707 TTTTAAACAC
* * *
75804717 GAATTTTTTAAAATACAA
1 GAATTTTTGAAAACACGA
*
75804735 GAATTTTAG-AAACAC-A
1 GAATTTTTGAAAACACGA
*
75804751 -AATTTTTAAAAGAACACGA
1 GAATTTTT-GAA-AACACGA
*
75804770 -AAATTTTG-AAACACGA
1 GAATTTTTGAAAACACGA
*
75804786 GATTTCTTTG-AAACACGA
1 GAATT-TTTGAAAACACGA
* *
75804804 AAATTTATG-AAACACG-
1 GAATTTTTGAAAACACGA
75804820 GTCAATTTCTT-AAAACACGA
1 G--AATTT-TTGAAAACACGA
* *
75804840 -AAGTTTTTGGAAA-ACGG
1 GAA-TTTTTGAAAACACGA
75804857 GAATTTTTTTTTTG-AAACACGA
1 GAA-----TTTTTGAAAACACGA
* *
75804879 AAAATTTTG-AAACACTG-
1 GAATTTTTGAAAACAC-GA
75804896 GAA-TTTTGAAAACACGA
1 GAATTTTTGAAAACACGA
* * *
75804913 GGATTTTT-TAAATACGA
1 GAATTTTTGAAAACACGA
** *
75804930 -AAAATTTGAAAACAAGA
1 GAATTTTTGAAAACACGA
* *
75804947 AAATTTTTG-AAATACGA
1 GAATTTTTGAAAACACGA
* *
75804964 AAATTTTAG-AAACACGA
1 GAATTTTTGAAAACACGA
*
75804981 AAATTTTTG-AAACAC-A
1 GAATTTTTGAAAACACGA
75804997 GAAGTTTTTAGAAAACACGA
1 GAA-TTTTT-GAAAACACGA
* * **
75805017 AAAATTTTGAAAA-TTG-
1 GAATTTTTGAAAACACGA
75805033 GAATTTTTTTGAAAACACGA
1 GAA--TTTTTGAAAACACGA
*
75805053 GAATTTTTGAAAAACATGA
1 GAATTTTTG-AAAACACGA
* * *
75805072 AAATTTTTG-CAACACGG
1 GAATTTTTGAAAACACGA
75805089 GAATTTTTGAAAACACGA
1 GAATTTTTGAAAACACGA
75805107 AAAATTTTCC
Statistics
Matches: 283, Mismatches: 54, Indels: 70
0.70 0.13 0.17
Matches are distributed among these distances:
15 6 0.02
16 23 0.08
17 114 0.40
18 78 0.28
19 42 0.15
20 6 0.02
21 3 0.01
22 11 0.04
ACGTcount: A:0.45, C:0.10, G:0.14, T:0.31
Consensus pattern (18 bp):
GAATTTTTGAAAACACGA
Found at i:75819763 original size:34 final size:33
Alignment explanation
Indices: 75819689--75819802 Score: 108
Period size: 35 Copynumber: 3.4 Consensus size: 33
75819679 AGAAATTGAC
*
75819689 CGTGTTTCATAAATTTTCGTG-TTTCAAAGAAATCT
1 CGTGTTTCA-AAATTTTCGTGTTTTTAAA-AAAT-T
*
75819724 CGTGTTTCAAAATTTTCGTGTTTTTTTAAAAATT
1 CGTGTTTCAAAATTTTCGTG-TTTTTAAAAAATT
* *
75819758 TGTGTTTCTAAAATTCTT-GT-ATTTTAAAAAATT
1 CGTGTTTC-AAAATT-TTCGTGTTTTTAAAAAATT
*
75819791 CGTGTTTAAAAA
1 CGTGTTTCAAAA
75819803 AAAGGAAAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
32 4 0.06
33 17 0.25
34 19 0.28
35 21 0.31
36 7 0.10
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.47
Consensus pattern (33 bp):
CGTGTTTCAAAATTTTCGTGTTTTTAAAAAATT
Found at i:75819787 original size:17 final size:16
Alignment explanation
Indices: 75819746--75819797 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
75819736 TTTTCGTGTT
75819746 TTTTTAAAAATTTGTG
1 TTTTTAAAAATTTGTG
* * *
75819762 TTTCTAAAATTCTTGTA
1 TTTTTAAAAAT-TTGTG
* *
75819779 TTTTAAAAAATTCGTG
1 TTTTTAAAAATTTGTG
75819795 TTT
1 TTT
75819798 AAAAAAAAGG
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
16 15 0.56
17 12 0.44
ACGTcount: A:0.31, C:0.06, G:0.10, T:0.54
Consensus pattern (16 bp):
TTTTTAAAAATTTGTG
Found at i:75819796 original size:33 final size:33
Alignment explanation
Indices: 75819689--75819802 Score: 99
Period size: 33 Copynumber: 3.4 Consensus size: 33
75819679 AGAAATTGAC
*
75819689 CGTGTTTCATAAATTTTCGTG--TTTCAAAGAAATCT
1 CGTGTTTCA-AAA-TTTCGTGTATTTTAAA-AAAT-T
* *
75819724 CGTGTTTCAAAATTTTCGTGTTTTTTTAAAAATT
1 CGTGTTTCAAAA-TTTCGTGTATTTTAAAAAATT
* *
75819758 TGTGTTTCTAAAA-TTCTTGTATTTTAAAAAATT
1 CGTGTTTC-AAAATTTCGTGTATTTTAAAAAATT
*
75819791 CGTGTTTAAAAA
1 CGTGTTTCAAAA
75819803 AAAGGAAAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
32 4 0.06
33 23 0.34
34 19 0.28
35 17 0.25
36 5 0.07
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.47
Consensus pattern (33 bp):
CGTGTTTCAAAATTTCGTGTATTTTAAAAAATT
Found at i:75821269 original size:26 final size:25
Alignment explanation
Indices: 75821218--75821606 Score: 165
Period size: 26 Copynumber: 15.1 Consensus size: 25
75821208 TGTTATTCAT
75821218 TTATTTATTTTAAACCTTTTTCTTATATA
1 TTATTTATTTTAAA---TTTT-TTATATA
75821247 TTATTTATTTTAAATTATTTTAT-TA
1 TTATTTATTTTAAATT-TTTTATATA
* ** *
75821272 TTATTTATTTCT-AGTTTTCCATATG
1 TTATTTATTT-TAAATTTTTTATATA
* * * *
75821297 TCATTTATTTTAAACTATTTCAAACTA
1 TTATTTATTTTAAA-TTTTTTATA-TA
* *
75821324 TTATCTA--TT---TTTTGTATATA
1 TTATTTATTTTAAATTTTTTATATA
* *
75821344 TTATTTATTTTTAAACTATTATATATA
1 TTATTTA-TTTTAAA-TTTTTTATATA
*
75821371 TTATTTATTTTGAATTGTTTTTATATA
1 TTATTTATTTT-AAAT-TTTTTATATA
* * *
75821398 CCTCATTTATTTTTTAAACTGTTTTGTATA
1 --TTATTTA--TTTTAAA-TTTTTTATATA
* * *
75821428 TTAGTTATTTCAAACTTCTTTT-TGCATT
1 TTATTTATTTTAAA-TT-TTTTAT--ATA
75821456 TTATTTATTTTAAA-TTTTT-TATA
1 TTATTTATTTTAAATTTTTTATATA
* * *
75821479 -TA-TTATTTTAAATTGTCTCATATG
1 TTATTTATTTTAAATT-TTTTATATA
* * *
75821503 TTATTTATTTTAAATTGCTTTGTGTA
1 TTATTTATTTTAAATT-TTTTATATA
* *
75821529 TTATTTATTTTAATTTGTTTTACATA
1 TTATTTATTTTAAATT-TTTTATATA
* *
75821555 TTATTTACTTTAAATTGTTT-TATA
1 TTATTTATTTTAAATTTTTTATATA
* * * *
75821579 CTATTTACTTCAAATTATTCTATATA
1 TTATTTATTTTAAATT-TTTTATATA
75821605 TT
1 TT
75821607 TTTTTTCGTT
Statistics
Matches: 273, Mismatches: 57, Indels: 63
0.69 0.15 0.16
Matches are distributed among these distances:
20 8 0.03
21 15 0.05
22 3 0.01
23 6 0.02
24 25 0.09
25 40 0.15
26 84 0.31
27 38 0.14
28 19 0.07
29 20 0.07
30 10 0.04
31 5 0.02
ACGTcount: A:0.28, C:0.07, G:0.04, T:0.60
Consensus pattern (25 bp):
TTATTTATTTTAAATTTTTTATATA
Found at i:75821273 original size:25 final size:28
Alignment explanation
Indices: 75821218--75821281 Score: 89
Period size: 29 Copynumber: 2.4 Consensus size: 28
75821208 TGTTATTCAT
*
75821218 TTATTTATTTTAAACCTTTTTCTTATATA
1 TTATTTATTTTAAA-CTTATTCTTATATA
75821247 TTATTTATTTTAAA-TTATT-TTAT-TA
1 TTATTTATTTTAAACTTATTCTTATATA
75821272 TTATTTATTT
1 TTATTTATTT
75821282 CTAGTTTTCC
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
25 12 0.35
26 4 0.12
27 4 0.12
29 14 0.41
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (28 bp):
TTATTTATTTTAAACTTATTCTTATATA
Found at i:75821372 original size:20 final size:19
Alignment explanation
Indices: 75821318--75821377 Score: 52
Period size: 18 Copynumber: 3.1 Consensus size: 19
75821308 AAACTATTTC
*
75821318 AAACTATTATCTATTTTTTGT
1 AAACTATTAT-TATATTTT-T
*
75821339 ATA-TATTATT-TATTTTT
1 AAACTATTATTATATTTTT
75821356 AAACTATTATATATATTATTT
1 AAACTATTAT-TATATT-TTT
75821377 A
1 A
75821378 TTTTGAATTG
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
17 3 0.09
18 11 0.34
19 2 0.06
20 10 0.31
21 6 0.19
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (19 bp):
AAACTATTATTATATTTTT
Found at i:75821501 original size:22 final size:21
Alignment explanation
Indices: 75821460--75821508 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
75821450 TGCATTTTAT
* *
75821460 TTATTTTAAATTTTTTATATA
1 TTATTTTAAATTTCTCATATA
*
75821481 TTATTTTAAATTGTCTCATATG
1 TTATTTTAAATT-TCTCATATA
75821503 TTATTT
1 TTATTT
75821509 ATTTTAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (21 bp):
TTATTTTAAATTTCTCATATA
Found at i:75825439 original size:22 final size:22
Alignment explanation
Indices: 75825414--75825458 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
75825404 TATTATAACT
75825414 TTTTTTTATTTACCAAAATATA
1 TTTTTTTATTTACCAAAATATA
75825436 TTTTTTTATTTACCAAAATATA
1 TTTTTTTATTTACCAAAATATA
75825458 T
1 T
75825459 AAAAAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.56
Consensus pattern (22 bp):
TTTTTTTATTTACCAAAATATA
Found at i:75825558 original size:27 final size:27
Alignment explanation
Indices: 75825528--75825591 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
75825518 CGCCAAAACG
75825528 ATTGGCGGCACCAACGGTGCC-AAGGCC
1 ATTGGCGGCACCAACGGTGCCAAAGG-C
*
75825555 ATTGGCGGCACCAATGGTGCCAAAGGC
1 ATTGGCGGCACCAACGGTGCCAAAGGC
75825582 ATTGGCGGCA
1 ATTGGCGGCA
75825592 TTACTCGTGT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 31 0.89
28 4 0.11
ACGTcount: A:0.23, C:0.28, G:0.34, T:0.14
Consensus pattern (27 bp):
ATTGGCGGCACCAACGGTGCCAAAGGC
Found at i:75825692 original size:11 final size:11
Alignment explanation
Indices: 75825676--75825715 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
75825666 GGTGTTGCGG
75825676 AAAAGAAGAGA
1 AAAAGAAGAGA
75825687 AAAAG-AGAGA
1 AAAAGAAGAGA
*
75825697 AAGAGAAGAGA
1 AAAAGAAGAGA
75825708 AAAAGAAG
1 AAAAGAAG
75825716 GTATTTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 9 0.35
11 17 0.65
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (11 bp):
AAAAGAAGAGA
Found at i:75825705 original size:21 final size:20
Alignment explanation
Indices: 75825675--75825713 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
75825665 AGGTGTTGCG
75825675 GAAAAGAAGAGAAAAAGAGA
1 GAAAAGAAGAGAAAAAGAGA
75825695 GAAAGAGAAGAGAAAAAGA
1 GAAA-AGAAGAGAAAAAGA
75825714 AGGTATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (20 bp):
GAAAAGAAGAGAAAAAGAGA
Found at i:75825847 original size:3 final size:3
Alignment explanation
Indices: 75825841--75825875 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
75825831 AGTATTATTA
75825841 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
75825876 AGTATTAAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:75826059 original size:27 final size:27
Alignment explanation
Indices: 75826029--75826080 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
75826019 AATTGGTAGG
*
75826029 TACATGCATGGACGGCATTGAAGATAA
1 TACATGCATGGACGGCAATGAAGATAA
75826056 TACATGCATGGACGGCAATGAAGAT
1 TACATGCATGGACGGCAATGAAGAT
75826081 GCTTCAATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.21
Consensus pattern (27 bp):
TACATGCATGGACGGCAATGAAGATAA
Found at i:75829097 original size:17 final size:17
Alignment explanation
Indices: 75829068--75829101 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
75829058 AAAAACCCTA
75829068 TTTTCTCTTTTTCTTTC
1 TTTTCTCTTTTTCTTTC
75829085 TTTT-TCTTCTTTCTTTC
1 TTTTCTCTT-TTTCTTTC
75829102 CTTCTTTTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTCTCTTTTTCTTTC
Found at i:75829493 original size:3 final size:3
Alignment explanation
Indices: 75829485--75829513 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
75829475 AACTTATTTC
75829485 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
75829514 TTAATAACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:75831910 original size:29 final size:29
Alignment explanation
Indices: 75831868--75831926 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
75831858 TCGTGGAAGA
* *
75831868 GGTGAAAAACTTGTTTGTTGAGAGTTCGT
1 GGTGAAAAACTTGTTCGTTGAGAATTCGT
* *
75831897 GGTGAAGAATTTGTTCGTTGAGAATTCGT
1 GGTGAAAAACTTGTTCGTTGAGAATTCGT
75831926 G
1 G
75831927 TCAAGGTGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.24, C:0.07, G:0.32, T:0.37
Consensus pattern (29 bp):
GGTGAAAAACTTGTTCGTTGAGAATTCGT
Found at i:75833135 original size:20 final size:21
Alignment explanation
Indices: 75833082--75833154 Score: 69
Period size: 21 Copynumber: 3.4 Consensus size: 21
75833072 TTTATTAAGT
* *
75833082 TTATTTTTTTAGA-TAATTACA
1 TTATTTTTTTAAATTAATGA-A
75833103 TTTATTTTCTTTAAATTAA-GAA
1 -TTATTTT-TTTAAATTAATGAA
* *
75833125 TTATTTTTTTAATTTAATGTA
1 TTATTTTTTTAAATTAATGAA
75833146 TTATTTTTT
1 TTATTTTTT
75833155 ATTTTTTTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
20 9 0.20
21 18 0.41
22 8 0.18
23 6 0.14
24 3 0.07
ACGTcount: A:0.30, C:0.03, G:0.04, T:0.63
Consensus pattern (21 bp):
TTATTTTTTTAAATTAATGAA
Found at i:75833634 original size:31 final size:30
Alignment explanation
Indices: 75833599--75833660 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
75833589 GTCCCTCATG
*
75833599 TTAGATAAATTATTGATTTGAGTCACTTCTA
1 TTAGATAAATTATTAATTTGAGTCAC-TCTA
* * *
75833630 TTAGATAAGTTGTTAATTTTAGTCACTCTA
1 TTAGATAAATTATTAATTTGAGTCACTCTA
75833660 T
1 T
75833661 CATTAAAATG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
30 5 0.19
31 22 0.81
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.47
Consensus pattern (30 bp):
TTAGATAAATTATTAATTTGAGTCACTCTA
Found at i:75834742 original size:17 final size:17
Alignment explanation
Indices: 75834720--75834762 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
75834710 ATTTAGGGTT
75834720 TAAGAAGAGAAA-AAGAA
1 TAAGAAGA-AAAGAAGAA
*
75834737 TAAGAAGAAAAGGAGAA
1 TAAGAAGAAAAGAAGAA
75834754 TAAGAAGAA
1 TAAGAAGAA
75834763 GAAGGAGGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 3 0.12
17 21 0.88
ACGTcount: A:0.67, C:0.00, G:0.26, T:0.07
Consensus pattern (17 bp):
TAAGAAGAAAAGAAGAA
Found at i:75835693 original size:3 final size:3
Alignment explanation
Indices: 75835685--75835714 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
75835675 AATAAAATGC
*
75835685 AAT AAT AAT AAT AAT AAC AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
75835715 TGTAATAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:75837044 original size:16 final size:15
Alignment explanation
Indices: 75837023--75837053 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
75837013 TTTCTTAGAC
75837023 TTTTGTATATTGTATA
1 TTTTGTATATT-TATA
75837039 TTTTGTATATTTATA
1 TTTTGTATATTTATA
75837054 CATACTCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.26, C:0.00, G:0.10, T:0.65
Consensus pattern (15 bp):
TTTTGTATATTTATA
Found at i:75842181 original size:3 final size:3
Alignment explanation
Indices: 75842173--75842197 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
75842163 GATAAGTCTT
75842173 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
75842198 GAATTTATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:75851785 original size:41 final size:41
Alignment explanation
Indices: 75851671--75851843 Score: 161
Period size: 41 Copynumber: 4.2 Consensus size: 41
75851661 TTGTAAGTTT
*
75851671 AGGCTTTATGCCTAGCAGGCTTTATGCTGGTGAATTATATC
1 AGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATATC
* ** * * * *
75851712 AGGCTTGATATC-AGAAGGCTCTGTGCCAGTGAATTATATC
1 AGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATATC
* * * * * *
75851752 AGACTTTATGTCTATCAGGCTTTGTGCCGGTGAAATGTATC
1 AGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATATC
* * **
75851793 GGGCTTTGTGCCTAGCAGGCTTTATGCCGGTGTTTTATA-C
1 AGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATATC
75851833 AAGGCTTTATG
1 -AGGCTTTATG
75851844 TTCTATAAAT
Statistics
Matches: 101, Mismatches: 29, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
40 33 0.33
41 68 0.67
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.35
Consensus pattern (41 bp):
AGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATATC
Found at i:75852722 original size:69 final size:69
Alignment explanation
Indices: 75852633--75853049 Score: 566
Period size: 69 Copynumber: 6.0 Consensus size: 69
75852623 TATGATGTAT
* * * * * * * *** *
75852633 TATGTATATGCTGCCCATTTGTTGTATATATACTATTCAATTTTGGTGTAAAATTGCAACTCAAT
1 TATGTATATGTTGCCTATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAAT
75852698 TTGG
66 TTGG
* * * * *
75852702 TATGTATATGTTGCCTATTTGTTGTATATATGCTGTTAAATTTTTGTGTAAAAATGCTGCTCAAT
1 TATGTATATGTTGCCTATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAAT
*
75852767 TTAG
66 TTGG
* * * *
75852771 TATGTATATGATGCCCATTTGTTGTATATATGTTGTTAAATTTTGGTGTAAAAGTGCTGTTAAAT
1 TATGTATATGTTGCCTATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAAT
75852836 TTGG
66 TTGG
*
75852840 TATGTATATGTTGCCTATTTGCTATATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAAT
1 TATGTATATGTTGCCTATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAAT
75852905 TTGG
66 TTGG
* * *
75852909 TATGTATATGTTGCCTATTTGCTATATATATGCTGTTAAATTTTGGTGTAAAAGTGCTATTAAAA
1 TATGTATATGTTGCCTATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAAT
75852974 TTGG
66 TTGG
* * *
75852978 TATGTATATGCTGCCTATTTACTGTATATATGCTGTTAAATTTTGGTGTATAAA-TGCTGTTTAA
1 TATGTATATGTTGCCTATTTGCTGTATATATGCTGTTAAATTTTGGTGTA-AAAGTGCTGTTAAA
75853042 TTTGG
65 TTTGG
75853047 TAT
1 TAT
75853050 ATAAATGCTG
Statistics
Matches: 316, Mismatches: 31, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
69 313 0.99
70 3 0.01
ACGTcount: A:0.27, C:0.08, G:0.19, T:0.46
Consensus pattern (69 bp):
TATGTATATGTTGCCTATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAAT
TTGG
Found at i:75853067 original size:24 final size:23
Alignment explanation
Indices: 75852787--75853084 Score: 81
Period size: 24 Copynumber: 12.9 Consensus size: 23
75852777 TATGATGCCC
* * * *
75852787 ATTTGTTGTATATATGTTGTTAA
1 ATTTGGTGTATAAATGCTGTCAA
*
75852810 ATTTTGGTGTA-AAAGTGCTGTTAA
1 A-TTTGGTGTATAAA-TGCTGTCAA
* * * * **
75852834 ATTTGGTATGTATATGTTG-CCT
1 ATTTGGTGTATAAATGCTGTCAA
* * * *
75852856 ATTTGCTATATATATGCTGTTAA
1 ATTTGGTGTATAAATGCTGTCAA
*
75852879 ATTTTGGTGTA-AAAGTGCTGTTAA
1 A-TTTGGTGTATAAA-TGCTGTCAA
* * * * **
75852903 ATTTGGTATGTATATGTTG-CCT
1 ATTTGGTGTATAAATGCTGTCAA
* * * *
75852925 ATTTGCTATATATATGCTGTTAA
1 ATTTGGTGTATAAATGCTGTCAA
* *
75852948 ATTTTGGTGTA-AAAGTGCTATTAA
1 A-TTTGGTGTATAAA-TGCTGTCAA
* * * * **
75852972 AATTGGTATGTATATGCTG-CCT
1 ATTTGGTGTATAAATGCTGTCAA
** * *
75852994 ATTTACTGTATATATGCTGTTAA
1 ATTTGGTGTATAAATGCTGTCAA
**
75853017 ATTTTGGTGTATAAATGCTGTTTA
1 A-TTTGGTGTATAAATGCTGTCAA
*
75853041 ATTTGGTATATAAATGCTGTCCAA
1 ATTTGGTGTATAAATGCTGT-CAA
*
75853065 A-TTGATGTATAAGA-GCTGTC
1 ATTTGGTGTATAA-ATGCTGTC
75853085 CAAACAAGGT
Statistics
Matches: 199, Mismatches: 61, Indels: 31
0.68 0.21 0.11
Matches are distributed among these distances:
22 47 0.24
23 74 0.37
24 78 0.39
ACGTcount: A:0.28, C:0.07, G:0.20, T:0.45
Consensus pattern (23 bp):
ATTTGGTGTATAAATGCTGTCAA
Found at i:75853075 original size:23 final size:23
Alignment explanation
Indices: 75853024--75853088 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 23
75853014 TAAATTTTGG
** * *
75853024 TGTATAAATGCTGTTTAATTTGG
1 TGTATAAATGCTGTCCAAATTGA
*
75853047 TATATAAATGCTGTCCAAATTGA
1 TGTATAAATGCTGTCCAAATTGA
75853070 TGTATAAGA-GCTGTCCAAA
1 TGTATAA-ATGCTGTCCAAA
75853089 CAAGGTAGAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
23 34 0.97
24 1 0.03
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (23 bp):
TGTATAAATGCTGTCCAAATTGA
Found at i:75854228 original size:14 final size:14
Alignment explanation
Indices: 75854209--75854236 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
75854199 AAGCATACAT
75854209 TTGCTAAATACTAA
1 TTGCTAAATACTAA
75854223 TTGCTAAATACTAA
1 TTGCTAAATACTAA
75854237 CTAAAAGTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (14 bp):
TTGCTAAATACTAA
Found at i:75866236 original size:30 final size:31
Alignment explanation
Indices: 75866212--75866270 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
75866202 GTAAATACTC
* **
75866212 AAAATTTGAAGGGTTAA-AGTGTAAATATGA
1 AAAAGTTGAAGGACTAATAGTGTAAATATGA
75866242 AAAAGTTGAAGGACTAATAGTGTAAATAT
1 AAAAGTTGAAGGACTAATAGTGTAAATAT
75866271 TTTAAGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.47, C:0.02, G:0.22, T:0.29
Consensus pattern (31 bp):
AAAAGTTGAAGGACTAATAGTGTAAATATGA
Found at i:75868591 original size:45 final size:45
Alignment explanation
Indices: 75868526--75868671 Score: 238
Period size: 45 Copynumber: 3.2 Consensus size: 45
75868516 ATGTGCCGAC
*
75868526 TACTGTTACTGTTACTGATTCGGCACTTTGTGTGTCGAATATTGT
1 TACTGTTACTGTTACAGATTCGGCACTTTGTGTGTCGAATATTGT
* *
75868571 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATACTGT
1 TACTGTTACTGTTACAGATTCGGCACTTTGTGTGTCGAATATTGT
* * *
75868616 TACCGTTACTGTTACAGATTCAGCACTTTGTGTGTTGAATATTGT
1 TACTGTTACTGTTACAGATTCGGCACTTTGTGTGTCGAATATTGT
75868661 TACTGTTACTG
1 TACTGTTACTG
75868672 CTACTGTTAC
Statistics
Matches: 93, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 93 1.00
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.42
Consensus pattern (45 bp):
TACTGTTACTGTTACAGATTCGGCACTTTGTGTGTCGAATATTGT
Found at i:75868696 original size:7 final size:6
Alignment explanation
Indices: 75868658--75868703 Score: 56
Period size: 6 Copynumber: 7.3 Consensus size: 6
75868648 TGTTGAATAT
* *
75868658 TGTTAC TGTTAC TGCTAC TGTTAC CGTTAC TGATTAC TGTTTAC TG
1 TGTTAC TGTTAC TGTTAC TGTTAC TGTTAC TG-TTAC TG-TTAC TG
75868704 GTGTGTTTGG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
6 22 0.65
7 12 0.35
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (6 bp):
TGTTAC
Found at i:75869042 original size:13 final size:13
Alignment explanation
Indices: 75869024--75869049 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75869014 TAAAAGAATG
75869024 AATTGATGATGGA
1 AATTGATGATGGA
75869037 AATTGATGATGGA
1 AATTGATGATGGA
75869050 TAAATTATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.31, T:0.31
Consensus pattern (13 bp):
AATTGATGATGGA
Found at i:75873602 original size:44 final size:43
Alignment explanation
Indices: 75873520--75873603 Score: 98
Period size: 43 Copynumber: 1.9 Consensus size: 43
75873510 TAAAAATTAC
* ***
75873520 AAAAAATTAAAATATTTGTAAAAATTTCAAATTTTATATATTT
1 AAAAAATTAAAATATTTGTAAAAAATTCAAAAAATATATATTT
*
75873563 AAAAAATTATAAA-ATTTTTAAAAAATTCTAAAAAATATATA
1 AAAAAATTA-AAATATTTGTAAAAAATTC-AAAAAATATATA
75873604 AAGAAAGTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
43 22 0.65
44 12 0.35
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.39
Consensus pattern (43 bp):
AAAAAATTAAAATATTTGTAAAAAATTCAAAAAATATATATTT
Found at i:75873629 original size:19 final size:19
Alignment explanation
Indices: 75873578--75873638 Score: 59
Period size: 19 Copynumber: 3.1 Consensus size: 19
75873568 ATTATAAAAT
* *
75873578 TTTTAAAAAATTCTAAAAAA
1 TTTTAAAAAAGTC-AAAAGA
*
75873598 TATATAAAGAAAGTCAAAAGA
1 T-TTTAAA-AAAGTCAAAAGA
*
75873619 TTTTAAAAAAGTTAAAAGA
1 TTTTAAAAAAGTCAAAAGA
75873638 T
1 T
75873639 AATAATTTTG
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
19 12 0.35
20 6 0.18
21 11 0.32
22 5 0.15
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.30
Consensus pattern (19 bp):
TTTTAAAAAAGTCAAAAGA
Found at i:75876990 original size:107 final size:108
Alignment explanation
Indices: 75876804--75877104 Score: 466
Period size: 107 Copynumber: 2.8 Consensus size: 108
75876794 GAGGTGAAAG
* * *
75876804 AGGATATTTGGCTATTTGGTCAAACGAAAAAATCGAAACCTAGCACATTA-GGACATGTTTTCTC
1 AGGATATTTGGCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGGGA-ACGTTTTCTC
*
75876868 GAATTTCCAAACGCAAAATATTGCCTTACTTTGAATTTTTA-AA
65 GAATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTAGAA
*
75876911 AGGATATTTGGCTATTTGGTCGAACGAAAAAATCAAAACCCAGCACATTAGGGAACGTTTTCTCG
1 AGGATATTTGGCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGGGAACGTTTTCTCG
75876976 AATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTAGAA
66 AATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTAGAA
* * * * *
75877019 A-GATATTTGGCTATTTGGTCGAACG-AGAAATCGAAACTCAGCATATTTGGGCACGTTTTCTCG
1 AGGATATTTGGCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGGGAACGTTTTCTCG
*
75877082 AATTTCCAAATGCAAAATATTGC
66 AATTTCCAAACGCAAAATATTGC
75877105 TTTATTTAGA
Statistics
Matches: 180, Mismatches: 12, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
106 54 0.30
107 120 0.67
108 6 0.03
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (108 bp):
AGGATATTTGGCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGGGAACGTTTTCTCG
AATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTAGAA
Found at i:75879522 original size:44 final size:43
Alignment explanation
Indices: 75879295--75879592 Score: 149
Period size: 44 Copynumber: 6.7 Consensus size: 43
75879285 CCGCTCCTAA
* * ** *
75879295 TGCAACTTCAGGGAGAT-AGGATTAGTAGCTTCAGTCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGG-TTTGTA-TTTCAACCTGCTCTAC
* * ** * * *
75879339 TACAACTTCAGTGAGATAAGACTTGCATATTCAACCTGCCCCAC
1 TGCAACTTCAGGGAGATAAGGTTTGTAT-TTCAACCTGCTCTAC
* * * *** *
75879383 TGC-ACTT-TGGGGGATAAGGTTTATGGCTCTAATCTGCT-TCAC
1 TGCAACTTCAGGGAGATAAGGTTTGTATTTC-AACCTGCTCT-AC
* * * * * *
75879425 TGCGACTTCAAGGAGATAAGATTTGTAGCCGGTCTTCAATCTACTCCAC
1 TGCAACTTCAGGGAGATAAGGTTTGTA-----T-TTCAACCTGCTCTAC
* * *
75879474 TGCAACTTTAGGGAGATAAGATTTGTATCTTCAACCTGC-CTCAT
1 TGCAACTTCAGGGAGATAAGGTTTGTAT-TTCAACCTGCTCT-AC
75879518 TGCAACTTCAGAGG-GATAAGGTTTGTTATTTCAACCTGCTCTAC
1 TGCAACTTCAG-GGAGATAAGGTTTG-TATTTCAACCTGCTCTAC
*
75879562 TGCAACTTCAGAGAGATAAGGTTTGTGATTT
1 TGCAACTTCAGGGAGATAAGGTTTGT-ATTT
75879593 ATAGCTTCAA
Statistics
Matches: 190, Mismatches: 45, Indels: 38
0.70 0.16 0.14
Matches are distributed among these distances:
41 2 0.01
42 21 0.11
43 11 0.06
44 112 0.59
45 9 0.05
49 33 0.17
50 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.31
Consensus pattern (43 bp):
TGCAACTTCAGGGAGATAAGGTTTGTATTTCAACCTGCTCTAC
Found at i:75882210 original size:45 final size:45
Alignment explanation
Indices: 75882003--75882202 Score: 274
Period size: 45 Copynumber: 4.4 Consensus size: 45
75881993 TCGCTTAGGG
* * * * * *
75882003 AGACAGGATCTACAATCTTCAATCTACTTCGCTGCTAATATAAGA
1 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAAGA
* * * *
75882048 AGACAATATATGCTATCTTCGATCTACTTTGCTGCCAATACAGGA
1 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAAGA
* *
75882093 AGATAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGA
1 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAAGA
* *
75882138 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGGCAATACAATA
1 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAAGA
75882183 AGACAAGATCTGCTATCTTC
1 AGACAAGATCTGCTATCTTC
75882203 AACCTACTCC
Statistics
Matches: 137, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 137 1.00
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.29
Consensus pattern (45 bp):
AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAAGA
Found at i:75882642 original size:132 final size:132
Alignment explanation
Indices: 75882183--75882614 Score: 675
Period size: 132 Copynumber: 3.3 Consensus size: 132
75882173 CAATACAATA
* * * * *
75882183 AGACAAGATCTGCTATCTTCAACCTACTCCATTGCTTCTCAGGGAGATAAGGCTAGTGGCTTAAA
1 AGACAGGATCTACAATCTTCAACCTACTCCACTGCTTCTCAGGGAGACAAGGCTAGTGGCTTAAA
* * * * * *
75882248 TCTGCTTCCTTATTACCTTGAGAAGATAAGATTCGCCGTCTTCGATCTGTTTCACTACTGCTTAG
66 TCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCTATCTGCTCCACTACTGCTTAG
75882313 GG
131 GG
* *
75882315 AGACAAGATCTACAATCTTCAACCTACTCCACTGCTTCTCAGTGAGACAAGGCTAGTGGCTTAAA
1 AGACAGGATCTACAATCTTCAACCTACTCCACTGCTTCTCAGGGAGACAAGGCTAGTGGCTTAAA
* *
75882380 TCTGTTTCCCTACTACCTTGGGAAGATAAGATTCGTCGTCTTCTATCTGCTCCACTACTGCTTAG
66 TCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCTATCTGCTCCACTACTGCTTAG
75882445 GG
131 GG
* *
75882447 AGACAGGATCTACAATCTTTAACCTACTCCACTGCTTCTCAAGGAGACAAGGCTAGTGGCTTAAA
1 AGACAGGATCTACAATCTTCAACCTACTCCACTGCTTCTCAGGGAGACAAGGCTAGTGGCTTAAA
*
75882512 TCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCTATCTGCTCCACTACTACTTAG
66 TCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCTATCTGCTCCACTACTGCTTAG
75882577 GG
131 GG
* * *
75882579 AGATAGGATCTACAATCTTCGACCTACTCTACTGCT
1 AGACAGGATCTACAATCTTCAACCTACTCCACTGCT
75882615 GCTTCGGGAG
Statistics
Matches: 276, Mismatches: 24, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
132 276 1.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (132 bp):
AGACAGGATCTACAATCTTCAACCTACTCCACTGCTTCTCAGGGAGACAAGGCTAGTGGCTTAAA
TCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCTATCTGCTCCACTACTGCTTAG
GG
Found at i:75899532 original size:54 final size:54
Alignment explanation
Indices: 75899467--75899569 Score: 197
Period size: 54 Copynumber: 1.9 Consensus size: 54
75899457 TAAATATCTT
*
75899467 CCAACAAATTGAAAATAATTTTTAAAAAATATGTAGACTTAAATAACACATTTC
1 CCAACAAATTGAAAATAAATTTTAAAAAATATGTAGACTTAAATAACACATTTC
75899521 CCAACAAATTGAAAATAAATTTTAAAAAATATGTAGACTTAAATAACAC
1 CCAACAAATTGAAAATAAATTTTAAAAAATATGTAGACTTAAATAACAC
75899570 TAAGATAAAT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.52, C:0.13, G:0.06, T:0.29
Consensus pattern (54 bp):
CCAACAAATTGAAAATAAATTTTAAAAAATATGTAGACTTAAATAACACATTTC
Found at i:75899637 original size:30 final size:30
Alignment explanation
Indices: 75899594--75899655 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
75899584 CTTAAAAAGT
75899594 AAATGCCTCTAAAATAATAACAAAATTAAC
1 AAATGCCTCTAAAATAATAACAAAATTAAC
* * *
75899624 AAATGTCTTTAAAATGATAACAAAATTAAC
1 AAATGCCTCTAAAATAATAACAAAATTAAC
75899654 AA
1 AA
75899656 TAAAATAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.56, C:0.13, G:0.05, T:0.26
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAACAAAATTAAC
Found at i:75899705 original size:14 final size:14
Alignment explanation
Indices: 75899686--75899715 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
75899676 ATCTAAACAA
75899686 TAGCAACAAAATAG
1 TAGCAACAAAATAG
*
75899700 TAGCAACATAATAG
1 TAGCAACAAAATAG
75899714 TA
1 TA
75899716 AAATGGTAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.53, C:0.13, G:0.13, T:0.20
Consensus pattern (14 bp):
TAGCAACAAAATAG
Found at i:75899920 original size:22 final size:22
Alignment explanation
Indices: 75899895--75899937 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
75899885 TATCCAAACA
75899895 ATAACAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* * *
75899917 ATAATAGTAAAATGGTAGCAA
1 ATAACAATAAAATAGTAGCAA
75899938 AATATGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:75901156 original size:21 final size:21
Alignment explanation
Indices: 75901127--75901168 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
75901117 TTAATTTGTT
75901127 CGTGAGATTTTGAATACAGCA
1 CGTGAGATTTTGAATACAGCA
* *
75901148 CGTGGGATTTTGAATATAGCA
1 CGTGAGATTTTGAATACAGCA
75901169 TGGCTGACCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (21 bp):
CGTGAGATTTTGAATACAGCA
Found at i:75902324 original size:107 final size:106
Alignment explanation
Indices: 75902126--75902328 Score: 255
Period size: 107 Copynumber: 1.9 Consensus size: 106
75902116 TTTTAAACTT
* * * * * * *
75902126 ATTCGTGACATGGTCAAGTCTTTTGATGCGAATTGAGATGACAACCAAGCACCTCACCCTAGTTA
1 ATTCGAGACATAGCCAAATCTTTTGACGCGAAATGAGATGACAACCAAGCACCTCACCCCAGTTA
**
75902191 CTCAACTTGACATTTTTTATTATTATTTATTATTTTTTACGA
66 CTCAACTTGACATACTTTA-TATTATTTATTATTTTTTACGA
* * *
75902233 ATTCGAGACATAGCCAAATCTTTTGACGTGAAATGAGATGACAACCAAGCATCTCACCCCGGTTA
1 ATTCGAGACATAGCCAAATCTTTTGACGCGAAATGAGATGACAACCAAGCACCTCACCCCAGTTA
*
75902298 CTCAACTTGGCATGACTTTA-ACTTATTTATT
66 CTCAACTTGACAT-ACTTTATA-TTATTTATT
75902329 TCTCTTTTCT
Statistics
Matches: 81, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
106 1 0.01
107 76 0.94
108 4 0.05
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.35
Consensus pattern (106 bp):
ATTCGAGACATAGCCAAATCTTTTGACGCGAAATGAGATGACAACCAAGCACCTCACCCCAGTTA
CTCAACTTGACATACTTTATATTATTTATTATTTTTTACGA
Found at i:75918293 original size:15 final size:16
Alignment explanation
Indices: 75918273--75918305 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
75918263 CTTTTACATT
75918273 TTTTTA-TCAATTTGA
1 TTTTTATTCAATTTGA
*
75918288 TTTTTATTTAATTTGA
1 TTTTTATTCAATTTGA
75918304 TT
1 TT
75918306 ATCAATCTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.24, C:0.03, G:0.06, T:0.67
Consensus pattern (16 bp):
TTTTTATTCAATTTGA
Found at i:75920328 original size:105 final size:106
Alignment explanation
Indices: 75920028--75920338 Score: 355
Period size: 106 Copynumber: 3.0 Consensus size: 106
75920018 TCTTCTCCCC
** **
75920028 TAATTGTGGTGGCTGCAGGGCTC-TTTTCCCAAAGGTTATAATTGTGTAGACTCATAG-TTTTAT
1 TAATTGTGGTGATTGCAGGGCTCTTTTTCCC-AAGGTTATAATAATGTAGACTCATAGTTTTTAT
* *
75920091 ATC-CTTTGTTTTGCATAGTTGTGTATCTTCATGTATTTAGAT
65 A-CACTTTGTTTTGCATAATTGTGTATCTCCATGTATTTAGAT
** ** * * * * *
75920133 TCTTTGTGGCAATTGCATGGATCTTTTTTTCCAAGGTTATAATGATGTAGGCTCATAGTTTTGTA
1 TAATTGTGGTGATTGCAGGGCTC-TTTTTCCCAAGGTTATAATAATGTAGACTCATAGTTTT-TA
* *
75920198 T--ACTTTGTTTTGCATAATTGTGTATCTCCGTGTATTTGGAT
64 TACACTTTGTTTTGCATAATTGTGTATCTCCATGTATTTAGAT
** *
75920239 TAATTGTGGTGATTGCAGGGCTCTTTTTCCCAAGG-TATAATAAAATAGACTTATAGTTTTTATA
1 TAATTGTGGTGATTGCAGGGCTCTTTTTCCCAAGGTTATAATAATGTAGACTCATAGTTTTTATA
*
75920303 CACTTTGTTTTGCATATTTGTGTATCTCCATGTATT
66 CACTTTGTTTTGCATAATTGTGTATCTCCATGTATT
75920339 ATTTTTTGGG
Statistics
Matches: 169, Mismatches: 30, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
103 3 0.02
104 20 0.12
105 59 0.35
106 75 0.44
107 9 0.05
108 3 0.02
ACGTcount: A:0.22, C:0.13, G:0.20, T:0.46
Consensus pattern (106 bp):
TAATTGTGGTGATTGCAGGGCTCTTTTTCCCAAGGTTATAATAATGTAGACTCATAGTTTTTATA
CACTTTGTTTTGCATAATTGTGTATCTCCATGTATTTAGAT
Found at i:75922437 original size:30 final size:30
Alignment explanation
Indices: 75922393--75922468 Score: 82
Period size: 31 Copynumber: 2.5 Consensus size: 30
75922383 CTTAGTAAAA
* * **
75922393 AAAAGTTATAATTTAGTTATTGAACT-ATT
1 AAAAGTTTTTATTTAGTTACCGAACTAATT
*
75922422 CGAAAGTTTTTATTTAAGTTACCGAACTAATT
1 -AAAAGTTTTTATTT-AGTTACCGAACTAATT
75922454 AAAAGTTTTTATTTA
1 AAAAGTTTTTATTTA
75922469 AGGTATTGGG
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
30 12 0.32
31 23 0.61
32 3 0.08
ACGTcount: A:0.38, C:0.07, G:0.11, T:0.45
Consensus pattern (30 bp):
AAAAGTTTTTATTTAGTTACCGAACTAATT
Found at i:75923280 original size:14 final size:14
Alignment explanation
Indices: 75923244--75923282 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
75923234 TTGTTTCATT
*
75923244 GAAAATGACTTCCG
1 GAAAATGATTTCCG
*
75923258 GAAAATGATTTCTG
1 GAAAATGATTTCCG
75923272 GAAAATGATTT
1 GAAAATGATTT
75923283 ACTTTTCTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (14 bp):
GAAAATGATTTCCG
Found at i:75923890 original size:18 final size:18
Alignment explanation
Indices: 75923854--75923889 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
75923844 TTATTATTTT
*
75923854 TAAAATTTACTATTAAAA
1 TAAAATTTAATATTAAAA
75923872 TAAAATTTAAATATTAAA
1 TAAAATTT-AATATTAAA
75923890 TTTTTTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:75923918 original size:20 final size:20
Alignment explanation
Indices: 75923880--75923918 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
75923870 AATAAAATTT
* * *
75923880 AAATATTAAATTTTTTTAAA
1 AAATAATAAATTATATTAAA
75923900 AAATAATAAATTATATTAA
1 AAATAATAAATTATATTAA
75923919 TTATTAATTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
AAATAATAAATTATATTAAA
Found at i:75924751 original size:54 final size:54
Alignment explanation
Indices: 75924693--75924812 Score: 179
Period size: 54 Copynumber: 2.2 Consensus size: 54
75924683 TCCCAGCCCA
* *
75924693 TGTAACTCACTGAG-TAGCCCCACAAGCCCGTGTGTCAGGCCGTGTGCTAGGCCG
1 TGTAACTCACTGAGTTA-CCACACAAGCCCATGTGTCAGGCCGTGTGCTAGGCCG
* * *
75924747 TGTAACTCTCTGAGTTACCACACACGCCCATGTGTCAGGCTGTGTGCTAGGCCG
1 TGTAACTCACTGAGTTACCACACAAGCCCATGTGTCAGGCCGTGTGCTAGGCCG
75924801 TGTAACTCACTG
1 TGTAACTCACTG
75924813 GCTTGAACAC
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
54 57 0.97
55 2 0.03
ACGTcount: A:0.19, C:0.30, G:0.27, T:0.24
Consensus pattern (54 bp):
TGTAACTCACTGAGTTACCACACAAGCCCATGTGTCAGGCCGTGTGCTAGGCCG
Found at i:75925583 original size:20 final size:20
Alignment explanation
Indices: 75925558--75925623 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
75925548 TATGTGCATT
75925558 CAGGGGTATCGAAGTACAAA
1 CAGGGGTATCGAAGTACAAA
* * * **
75925578 CAGGGGCA-CGTATGTGCATT
1 CAGGGGTATCG-AAGTACAAA
*
75925598 TAGGGGTATCGAAGTACAAA
1 CAGGGGTATCGAAGTACAAA
75925618 CAGGGG
1 CAGGGG
75925624 CACGTATGTG
Statistics
Matches: 32, Mismatches: 12, Indels: 4
0.67 0.25 0.08
Matches are distributed among these distances:
19 2 0.06
20 28 0.88
21 2 0.06
ACGTcount: A:0.32, C:0.15, G:0.35, T:0.18
Consensus pattern (20 bp):
CAGGGGTATCGAAGTACAAA
Found at i:75925595 original size:40 final size:40
Alignment explanation
Indices: 75925530--75925639 Score: 186
Period size: 40 Copynumber: 2.8 Consensus size: 40
75925520 AGGGTTACCA
*
75925530 AAGTACAAACA-GGGCACATATGTGCATTCAGGGGTATCG
1 AAGTACAAACAGGGGCACGTATGTGCATTCAGGGGTATCG
*
75925569 AAGTACAAACAGGGGCACGTATGTGCATTTAGGGGTATCG
1 AAGTACAAACAGGGGCACGTATGTGCATTCAGGGGTATCG
*
75925609 AAGTACAAACAGGGGCACGTATGTGTATTCA
1 AAGTACAAACAGGGGCACGTATGTGCATTCA
75925640 ACAATAATTA
Statistics
Matches: 66, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 11 0.17
40 55 0.83
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (40 bp):
AAGTACAAACAGGGGCACGTATGTGCATTCAGGGGTATCG
Found at i:75931548 original size:16 final size:16
Alignment explanation
Indices: 75931529--75931560 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
75931519 TTATTTATTG
75931529 TATGTTATTTTTAAAC
1 TATGTTATTTTTAAAC
75931545 TATGTTATTTTTAAAC
1 TATGTTATTTTTAAAC
75931561 ACACACCCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.56
Consensus pattern (16 bp):
TATGTTATTTTTAAAC
Found at i:75932023 original size:19 final size:19
Alignment explanation
Indices: 75931999--75932035 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
75931989 AAAAATAAAA
**
75931999 ATACTTTTGTATAATTTTT
1 ATACTTTTCAATAATTTTT
75932018 ATACTTTTCAATAATTTT
1 ATACTTTTCAATAATTTT
75932036 AATAATTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.08, G:0.03, T:0.59
Consensus pattern (19 bp):
ATACTTTTCAATAATTTTT
Found at i:75932054 original size:17 final size:17
Alignment explanation
Indices: 75932032--75932091 Score: 63
Period size: 17 Copynumber: 3.6 Consensus size: 17
75932022 TTTTCAATAA
75932032 TTTTAATAATTTTAAAT
1 TTTTAATAATTTTAAAT
* *
75932049 TTTTAA-AA-ATAAAAT
1 TTTTAATAATTTTAAAT
75932064 TTTT-ATAATTTTTAAAT
1 TTTTAATAA-TTTTAAAT
*
75932081 TTTTAAAAATT
1 TTTTAATAATT
75932092 AATTAAATAC
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
14 1 0.03
15 11 0.32
16 2 0.06
17 17 0.50
18 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TTTTAATAATTTTAAAT
Found at i:75932072 original size:31 final size:32
Alignment explanation
Indices: 75932030--75932090 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
75932020 ACTTTTCAAT
75932030 AATTTTAATAA-TTTTAAATTTTTAAAAATAA
1 AATTTTAATAATTTTTAAATTTTTAAAAATAA
*
75932061 AATTTTTATAATTTTTAAATTTTTAAAAAT
1 AATTTTAATAATTTTTAAATTTTTAAAAAT
75932091 TAATTAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
31 10 0.36
32 18 0.64
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (32 bp):
AATTTTAATAATTTTTAAATTTTTAAAAATAA
Found at i:75932075 original size:9 final size:8
Alignment explanation
Indices: 75932041--75932087 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
75932031 ATTTTAATAA
75932041 TTTTAAAT
1 TTTTAAAT
75932049 TTTTAAA-
1 TTTTAAAT
** *
75932056 AATAAAAT
1 TTTTAAAT
75932064 TTTTATAAT
1 TTTTA-AAT
75932073 TTTTAAAT
1 TTTTAAAT
75932081 TTTTAAA
1 TTTTAAA
75932088 AATTAATTAA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
7 4 0.13
8 19 0.61
9 8 0.26
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (8 bp):
TTTTAAAT
Found at i:75933773 original size:16 final size:17
Alignment explanation
Indices: 75933752--75933784 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
75933742 AATTCCTGCT
75933752 ATTTTA-CATTTTATTC
1 ATTTTAGCATTTTATTC
*
75933768 ATTTTAGCCTTTTATTC
1 ATTTTAGCATTTTATTC
75933785 TGAGAATTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.21, C:0.15, G:0.03, T:0.61
Consensus pattern (17 bp):
ATTTTAGCATTTTATTC
Found at i:75935281 original size:73 final size:73
Alignment explanation
Indices: 75935162--75935300 Score: 217
Period size: 73 Copynumber: 1.9 Consensus size: 73
75935152 TTGCTATCTA
* * *
75935162 CTAATTTATATTTTCAAGTAGATCTCGATAACCTAACACGTGTCATGGTTTACACTAACCAATAA
1 CTAATTTATATTTTCAAGTAGATCTCAATAACCTAACACCTGTCATGGTTTACACCAACCAATAA
75935227 AGAGGAAT
66 AGAGGAAT
**
75935235 CTAATTTATATTTTCAAGTA-AGTCTCAATAGTCTAACACCTGTCATGGTTTACACCAACCAATA
1 CTAATTTATATTTTCAAGTAGA-TCTCAATAACCTAACACCTGTCATGGTTTACACCAACCAATA
75935299 AA
65 AA
75935301 AAGTTATTCC
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
72 1 0.02
73 59 0.98
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.32
Consensus pattern (73 bp):
CTAATTTATATTTTCAAGTAGATCTCAATAACCTAACACCTGTCATGGTTTACACCAACCAATAA
AGAGGAAT
Found at i:75936243 original size:88 final size:89
Alignment explanation
Indices: 75936061--75936265 Score: 210
Period size: 88 Copynumber: 2.3 Consensus size: 89
75936051 AACCAATTAA
* * * * *
75936061 TTTTTTTTTGCATTAAATTGGGTACTTGAACTTTCAAAATGCATTAAAAAGACCCTCAAACTTTT
1 TTTTTGTTTGCACTCAATTGGGTACTTGAACTTGCAAAATGCATAAAAAAGACCCTCAAACTTTT
75936126 TCAAAAACAACAATTAAGCCTCTAC
66 TCAAAAACAACAATTAAG-CTCTAC
*
75936151 TTTTT-TTT-TACTCAATTGGGTACTTGAA-TTGCAAAATTGCATAAAAAATG-CCCTCTAAA-T
1 TTTTTGTTTGCACTCAATTGGGTACTTGAACTTGCAAAA-TGCATAAAAAA-GACCCTC-AAACT
*
75936211 TTTTCAAAAAAAAGAAGCAATTAAG-TC-A-
63 TTTTC---AAAAACAA-CAATTAAGCTCTAC
*
75936239 TTTTTGTTTGCACTCAATTGAGTACTT
1 TTTTTGTTTGCACTCAATTGGGTACTT
75936266 AAACAGCCAA
Statistics
Matches: 98, Mismatches: 8, Indels: 18
0.79 0.06 0.15
Matches are distributed among these distances:
87 7 0.07
88 43 0.44
89 11 0.11
90 22 0.22
91 7 0.07
92 8 0.08
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (89 bp):
TTTTTGTTTGCACTCAATTGGGTACTTGAACTTGCAAAATGCATAAAAAAGACCCTCAAACTTTT
TCAAAAACAACAATTAAGCTCTAC
Found at i:75936448 original size:18 final size:19
Alignment explanation
Indices: 75936427--75936468 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
75936417 AAAAAATCAA
75936427 TAAAATTT-ATAAAA-ATGT
1 TAAAATTTAATAAAATAT-T
*
75936445 TAAATTTTAATAAAATATT
1 TAAAATTTAATAAAATATT
75936464 TAAAA
1 TAAAA
75936469 AATTTTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
18 7 0.35
19 11 0.55
20 2 0.10
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (19 bp):
TAAAATTTAATAAAATATT
Found at i:75936470 original size:11 final size:10
Alignment explanation
Indices: 75936446--75936529 Score: 53
Period size: 10 Copynumber: 8.1 Consensus size: 10
75936436 TAAAAATGTT
75936446 AAATTTTAATA
1 AAATTTTAA-A
75936457 AAATATTTAAA
1 AAAT-TTTAAA
75936468 AAATTTT-AA
1 AAATTTTAAA
**
75936477 AAATTAGAAA
1 AAATTTTAAA
**
75936487 AAAAATTATAA
1 AAATTTTA-AA
*
75936498 AAATTGTAAA
1 AAATTTTAAA
* * *
75936508 ACATATAAAA
1 AAATTTTAAA
75936518 AAATTTGTAAA
1 AAATTT-TAAA
75936529 A
1 A
75936530 TGTATCAAAA
Statistics
Matches: 53, Mismatches: 16, Indels: 8
0.69 0.21 0.10
Matches are distributed among these distances:
9 7 0.13
10 21 0.40
11 20 0.38
12 5 0.09
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (10 bp):
AAATTTTAAA
Found at i:75936762 original size:19 final size:20
Alignment explanation
Indices: 75936712--75936762 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
75936702 TGGTATGATA
* *
75936712 ATTTTTATATTTTTTTTACG
1 ATTTTTATAATTTCTTTACG
*
75936732 AATTTTAT-ATTTCTTTAC-
1 ATTTTTATAATTTCTTTACG
75936750 ATTTTTATAATTT
1 ATTTTTATAATTT
75936763 TCTTATGACT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 7 0.27
19 12 0.46
20 7 0.27
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.67
Consensus pattern (20 bp):
ATTTTTATAATTTCTTTACG
Found at i:75936766 original size:20 final size:20
Alignment explanation
Indices: 75936712--75936766 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
75936702 TGGTATGATA
*
75936712 ATTTTTATATTTTTTTTACG
1 ATTTTTATATTTTCTTTACG
*
75936732 AATTTTATA-TTTCTTTAC-
1 ATTTTTATATTTTCTTTACG
75936750 ATTTTTATAATTTTCTT
1 ATTTTTAT-ATTTTCTT
75936767 ATGACTTTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 7 0.23
19 9 0.30
20 14 0.47
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (20 bp):
ATTTTTATATTTTCTTTACG
Found at i:75936849 original size:23 final size:23
Alignment explanation
Indices: 75936823--75936887 Score: 75
Period size: 23 Copynumber: 2.9 Consensus size: 23
75936813 ATAAAAAAAA
75936823 TTATAAGA-TTTTACAATTTTTTT
1 TTATAA-ATTTTTACAATTTTTTT
75936846 TTATAAATTTTTACAA---TTTT
1 TTATAAATTTTTACAATTTTTTT
*
75936866 TTATAATTTTTTTACAATTTTT
1 TTATAA-ATTTTTACAATTTTT
75936888 ATAACTTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
20 10 0.28
21 9 0.25
22 1 0.03
23 14 0.39
24 2 0.06
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.63
Consensus pattern (23 bp):
TTATAAATTTTTACAATTTTTTT
Found at i:75936856 original size:10 final size:10
Alignment explanation
Indices: 75936843--75936909 Score: 64
Period size: 10 Copynumber: 6.7 Consensus size: 10
75936833 TTACAATTTT
75936843 TTTTTATAAA
1 TTTTTATAAA
* *
75936853 TTTTTACAAT
1 TTTTTATAAA
75936863 TTTTTAT-AA
1 TTTTTATAAA
*
75936872 TTTTTTTACAA
1 TTTTTATA-AA
*
75936883 TTTTTATAAC
1 TTTTTATAAA
**
75936893 TTTTTATTGA
1 TTTTTATAAA
75936903 TTTTTAT
1 TTTTTAT
75936910 TTTTATATTT
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
9 7 0.16
10 29 0.64
11 9 0.20
ACGTcount: A:0.28, C:0.04, G:0.01, T:0.66
Consensus pattern (10 bp):
TTTTTATAAA
Found at i:75936876 original size:30 final size:30
Alignment explanation
Indices: 75936841--75936899 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
75936831 TTTTACAATT
* *
75936841 TTTTTTTATAAATTTTTACAATTTTTTATAA
1 TTTTTTTA-CAATTTTTACAACTTTTTATAA
*
75936872 TTTTTTTACAATTTTTATAACTTTTTAT
1 TTTTTTTACAATTTTTACAACTTTTTAT
75936900 TGATTTTTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 17 0.68
31 8 0.32
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (30 bp):
TTTTTTTACAATTTTTACAACTTTTTATAA
Found at i:75936896 original size:21 final size:21
Alignment explanation
Indices: 75936842--75936897 Score: 80
Period size: 20 Copynumber: 2.8 Consensus size: 21
75936832 TTTACAATTT
*
75936842 TTTTTTATAA-ATTTTTACAA
1 TTTTTTATAATTTTTTTACAA
75936862 TTTTTTATAATTTTTTTACAA
1 TTTTTTATAATTTTTTTACAA
*
75936883 -TTTTTATAACTTTTT
1 TTTTTTATAATTTTTT
75936898 ATTGATTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
20 24 0.73
21 9 0.27
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (21 bp):
TTTTTTATAATTTTTTTACAA
Found at i:75938784 original size:20 final size:19
Alignment explanation
Indices: 75938755--75938795 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 19
75938745 ACATGTGAAA
75938755 AATAATAAAA-TAAACAAAT
1 AATAATAAAATTAAA-AAAT
75938774 AATACATAAAATTAAAAAAT
1 AATA-ATAAAATTAAAAAAT
75938794 AA
1 AA
75938796 CTCTTAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 4 0.20
20 12 0.60
21 4 0.20
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.22
Consensus pattern (19 bp):
AATAATAAAATTAAAAAAT
Found at i:75938933 original size:19 final size:20
Alignment explanation
Indices: 75938897--75938950 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 20
75938887 TATAGAGTTA
75938897 AGTT-TTTTTTAGATAATT-AC
1 AGTTATTTTTTA-A-AATTAAC
* *
75938917 ATTTATTTTTTAAAATTAAG
1 AGTTATTTTTTAAAATTAAC
75938937 AGTTATTTTTTAAA
1 AGTTATTTTTTAAA
75938951 TTTCATGCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 4 0.14
20 18 0.62
21 7 0.24
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.56
Consensus pattern (20 bp):
AGTTATTTTTTAAAATTAAC
Found at i:75940458 original size:9 final size:9
Alignment explanation
Indices: 75940437--75940503 Score: 80
Period size: 9 Copynumber: 7.4 Consensus size: 9
75940427 TTTGGTTAAA
*
75940437 AATTAGCCG
1 AATTAACCG
*
75940446 AATTAACCA
1 AATTAACCG
*
75940455 AATTAACTG
1 AATTAACCG
*
75940464 AATTACCCG
1 AATTAACCG
75940473 AATTAACCG
1 AATTAACCG
*
75940482 AATTACCCG
1 AATTAACCG
*
75940491 AATTAACCT
1 AATTAACCG
75940500 AATT
1 AATT
75940504 GAATCATACA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 48 1.00
ACGTcount: A:0.42, C:0.22, G:0.09, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:75940628 original size:13 final size:13
Alignment explanation
Indices: 75940599--75940644 Score: 62
Period size: 13 Copynumber: 3.8 Consensus size: 13
75940589 AATTTTTATG
75940599 ATTGGGTTGGG--
1 ATTGGGTTGGGTA
75940610 -TTGGGTTGGGTA
1 ATTGGGTTGGGTA
75940622 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
*
75940635 ATTAGGTTGG
1 ATTGGGTTGG
75940645 ATTGAATACT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
10 10 0.32
13 21 0.68
ACGTcount: A:0.13, C:0.00, G:0.48, T:0.39
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:75944091 original size:42 final size:42
Alignment explanation
Indices: 75944039--75944138 Score: 173
Period size: 42 Copynumber: 2.4 Consensus size: 42
75944029 GCTCTCGGTA
* *
75944039 TCGCACACTTAGTGCCCGTTATTCAACATCATCATTTTAATT
1 TCGCACACTTAGTGCCCATTATCCAACATCATCATTTTAATT
*
75944081 TCGCACACTTAGTGCCCATTATCCAACATCATTATTTTAATT
1 TCGCACACTTAGTGCCCATTATCCAACATCATCATTTTAATT
75944123 TCGCACACTTAGTGCC
1 TCGCACACTTAGTGCC
75944139 GTTCATATAG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.26, C:0.28, G:0.10, T:0.36
Consensus pattern (42 bp):
TCGCACACTTAGTGCCCATTATCCAACATCATCATTTTAATT
Found at i:75946322 original size:94 final size:95
Alignment explanation
Indices: 75946155--75946858 Score: 635
Period size: 94 Copynumber: 7.5 Consensus size: 95
75946145 AAAGAGATAA
* * * * * * * *
75946155 GATTTGTAGC-TTCATCTTGCTCCATTGTAACTTCAGAGAGATAAAATTCGCTATGGTA-ACTTA
1 GATTTGTAGCTTTAATC-TGCTCCACTATAACTTTAGGGAGATAAGATTCGCTATGATAGACTTC
*** *
75946218 AATTTGACCCACTACAACTTTAGGGGTATAG
65 AATCCAACCCACTGCAACTTTAGGGGTATAG
* * * *
75946249 GATTTGTGGCTTTAATCTGCTCTACTATAACTTTAGGGAGATAAGATTCGTTATGCTAGA-TTCA
1 GATTTGTAGCTTTAATCTGCTCCACTATAACTTTAGGGAGATAAGATTCGCTATGATAGACTTCA
* *
75946313 ATCCAACCCACTGCAACTTCAGAGGTATAG
66 ATCCAACCCACTGCAACTTTAGGGGTATAG
*
75946343 GATTTGTAGCTTTAATCTGCTCCACTATAACTTCAGGGAGATAAGATTCGCTAT-AGTAGA-TTC
1 GATTTGTAGCTTTAATCTGCTCCACTATAACTTTAGGGAGATAAGATTCGCTATGA-TAGACTTC
* * * *
75946406 AATCCGATCCACTGCAACTTTAAGGGTATAA
65 AATCCAACCCACTGCAACTTTAGGGGTATAG
* * * ** * * *
75946437 GATTTGTAGC-TTCATCTGTTTCACTGCAACTTTAGGGAGATAAGATTCACTATGGTA-ACTTTA
1 GATTTGTAGCTTTAATCTGCTCCACTATAACTTTAGGGAGATAAGATTCGCTATGATAGACTTCA
* *
75946500 ATCCAACCCACTGCAACTTCAAGGGTATAG
66 ATCCAACCCACTGCAACTTTAGGGGTATAG
* * ** * *
75946530 GATTTGTAGCTTCAATCTGCTCTACTATAA-TTTCAGATAGATAAGGTTCGCTATGATAGA-TTT
1 GATTTGTAGCTTTAATCTGCTCCACTATAACTTT-AGGGAGATAAGATTCGCTATGATAGACTTC
** * *
75946593 AATCTGACCCACTGCATCTTTAGGGGTACAG
65 AATCCAACCCACTGCAACTTTAGGGGTATAG
* * * * ** * ** *
75946624 GATTTGTATCATTAATATACTCCACTGCAACTTCAAAGAGATAAGATTAGCTATGATA-ACTTCA
1 GATTTGTAGCTTTAATCTGCTCCACTATAACTTTAGGGAGATAAGATTCGCTATGATAGACTTCA
*** * ** * *
75946688 ATTTGACCCACTGCAACTTCAAAGCTATAA
66 ATCCAACCCACTGCAACTTTAGGGGTATAG
** * *
75946718 GATTCATAG-TTTCAATCTGCTCCACT-TCAACTTTAGGGAGATAAGATTCGCTATGGTAAACTT
1 GATTTGTAGCTTT-AATCTGCTCCACTAT-AACTTTAGGGAGATAAGATTCGCTATGATAGACTT
* * *
75946781 -AATCCAAACCACTGTAACTTTAGGGGTATAA
64 CAATCCAACCCACTGCAACTTTAGGGGTATAG
* *
75946812 GATTTGTAGCTTTAAT-TGTTCCACTGTAACTTTAGGGAGATAAGATT
1 GATTTGTAGCTTTAATCTGCTCCACTATAACTTTAGGGAGATAAGATT
75946859 TGTTATGGTA
Statistics
Matches: 490, Mismatches: 105, Indels: 31
0.78 0.17 0.05
Matches are distributed among these distances:
92 1 0.00
93 111 0.23
94 362 0.74
95 16 0.03
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.33
Consensus pattern (95 bp):
GATTTGTAGCTTTAATCTGCTCCACTATAACTTTAGGGAGATAAGATTCGCTATGATAGACTTCA
ATCCAACCCACTGCAACTTTAGGGGTATAG
Found at i:75946802 original size:375 final size:375
Alignment explanation
Indices: 75946155--75946877 Score: 893
Period size: 375 Copynumber: 1.9 Consensus size: 375
75946145 AAAGAGATAA
* * *
75946155 GATTTGTAGCTTCATCTTGCTCCATTGTAACTTCAGAGAGATAAAATTCGCTATGGTAACTTAAA
1 GATTTGTAGCTTCATCTTGCTCCACTATAACTTCAGAGAGATAAAATTCGCTATGATAACTTAAA
* * * * * * * * * *
75946220 TTTGACCCACTACAACTTTAGGGGTATAGGATTTGTGGCTTTAATCTGCTCTACTATAACTTTAG
66 TCTGACCCACTACAACTTTAGGGGTACAGGATTTGTAGCATTAATATACTCCACTACAACTTCAA
* * * * * * * **
75946285 GGAGATAAGATTCGTTATGCTAGATTCAATCCAACCCACTGCAACTTCAGAGGTATAGGATTTGT
131 AGAGATAAGATTAGCTATGATAGATTCAATCCAACCCACTGCAACTTCAAAGCTATAAGATTCAT
* * *
75946350 AGCTTTAATCTGCTCCACTATAACTTCAGGGAGATAAGATTCGCTATAGTAGATTCAATCCGATC
196 AGCTTTAATCTGCTCCACTATAACTTCAGGGAGATAAGATTCGCTATAGTAAATTCAATCCAAAC
* *
75946415 CACTGCAACTTTAAGGGTATAAGATTTGTAGC-TTCATCTGTTTCACTGCAACTTTAGGGAGATA
261 CACTGCAACTTTAAGGGTATAAGATTTGTAGCTTTAAT-TGTTCCACTGCAACTTTAGGGAGATA
*
75946479 AGATTCACTATGGTAACTTTAATCCAACCCACTGCAACTTCAAGGGTATAG
325 AGATTCACTATGGTAAATTTAATCCAACCCACTGCAACTTCAAGGGTATAG
* * * ** *
75946530 GATTTGTAGCTTCAATC-TGCTCTACTATAATTTCAGATAGATAAGGTTCGCTATGATAGA-TTT
1 GATTTGTAGCTTC-ATCTTGCTCCACTATAACTTCAGAGAGATAAAATTCGCTATGATA-ACTTA
* * * *
75946593 AATCTGACCCACTGCATCTTTAGGGGTACAGGATTTGTATCATTAATATACTCCACTGCAACTTC
64 AATCTGACCCACTACAACTTTAGGGGTACAGGATTTGTAGCATTAATATACTCCACTACAACTTC
***
75946658 AAAGAGATAAGATTAGCTATGATA-ACTTCAATTTGACCCACTGCAACTTCAAAGCTATAAGATT
129 AAAGAGATAAGATTAGCTATGATAGA-TTCAATCCAACCCACTGCAACTTCAAAGCTATAAGATT
* *
75946722 CATAG-TTTCAATCTGCTCCACT-TCAACTTTAGGGAGATAAGATTCGCTATGGTAAACTT-AAT
193 CATAGCTTT-AATCTGCTCCACTAT-AACTTCAGGGAGATAAGATTCGCTATAGTAAA-TTCAAT
* * *
75946784 CCAAACCACTGTAACTTTAGGGGTATAAGATTTGTAGCTTTAATTGTTCCACTGTAACTTTAGGG
255 CCAAACCACTGCAACTTTAAGGGTATAAGATTTGTAGCTTTAATTGTTCCACTGCAACTTTAGGG
***
75946849 AGATAAGATTTGTTATGGTAAATTTAATC
320 AGATAAGATTCACTATGGTAAATTTAATC
75946878 TGATCCACTA
Statistics
Matches: 292, Mismatches: 49, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
374 5 0.02
375 277 0.95
376 10 0.03
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.34
Consensus pattern (375 bp):
GATTTGTAGCTTCATCTTGCTCCACTATAACTTCAGAGAGATAAAATTCGCTATGATAACTTAAA
TCTGACCCACTACAACTTTAGGGGTACAGGATTTGTAGCATTAATATACTCCACTACAACTTCAA
AGAGATAAGATTAGCTATGATAGATTCAATCCAACCCACTGCAACTTCAAAGCTATAAGATTCAT
AGCTTTAATCTGCTCCACTATAACTTCAGGGAGATAAGATTCGCTATAGTAAATTCAATCCAAAC
CACTGCAACTTTAAGGGTATAAGATTTGTAGCTTTAATTGTTCCACTGCAACTTTAGGGAGATAA
GATTCACTATGGTAAATTTAATCCAACCCACTGCAACTTCAAGGGTATAG
Found at i:75947035 original size:167 final size:167
Alignment explanation
Indices: 75946727--75947035 Score: 424
Period size: 167 Copynumber: 1.9 Consensus size: 167
75946717 AGATTCATAG
*
75946727 TTTCAATCTGCTCCACTTCAACTTTAGGGAGATAAGATTCGCTATGGTAAACTTAATCCAAACCA
1 TTTCAATCTGCTCCACTTCAACTTTAGAGAGATAAGATTCGCTATGGTAAACTTAATCCAAACCA
* * * * *
75946792 CTGTAACTTTAGGGGTATAAGATTTGTAGCTTTAATTGTTCCACTGTAACTTTAGGGAGATAAGA
66 CTGTAACTTCAGGGGTATAAGATTTGTAGCTTCAATTGCTCCACTGCAACTTCAGGGAGATAAGA
***
75946857 TTTGTTATGGTAAATTTAATCTGATCCACTATAACTA
131 TTCACTATGGTAAATTTAATCTGATCCACTATAACTA
* * * * * *
75946894 TTTCAATCTGTTCTA-TTGCAACTTTAGAGAGATAAGATTCGTTATGGTAAATTTAATCCGATCC
1 TTTCAATCTGCTCCACTT-CAACTTTAGAGAGATAAGATTCGCTATGGTAAACTTAATCCAAACC
* * *
75946958 ACTGTAACTTCAGGGGTATAGGATTTGTAGCTTCAATTTGCTCTA-TGCAACTTCAGGGAGATAG
65 ACTGTAACTTCAGGGGTATAAGATTTGTAGCTTCAA-TTGCTCCACTGCAACTTCAGGGAGATAA
75947022 GATTCACTATGGTA
129 GATTCACTATGGTA
75947036 GATTCAATTC
Statistics
Matches: 122, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
166 2 0.02
167 114 0.93
168 6 0.05
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (167 bp):
TTTCAATCTGCTCCACTTCAACTTTAGAGAGATAAGATTCGCTATGGTAAACTTAATCCAAACCA
CTGTAACTTCAGGGGTATAAGATTTGTAGCTTCAATTGCTCCACTGCAACTTCAGGGAGATAAGA
TTCACTATGGTAAATTTAATCTGATCCACTATAACTA
Found at i:75947153 original size:94 final size:94
Alignment explanation
Indices: 75946895--75947203 Score: 397
Period size: 94 Copynumber: 3.3 Consensus size: 94
75946885 CTATAACTAT
* * * * * * * *
75946895 TTCAATCTGTTCTATTGCAACTTTAGAGAGATAAGATTCGTTATGGTAAATTTAATCCGATCCAC
1 TTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTCATTATGGTAAATTCAATCTGACCCAC
*
75946960 TGTAACTTCAGGGGTATAGGATTTGTAGC
66 TGCAACTTCAGGGGTATAGGATTTGTAGC
* * * *
75946989 TTCAATTTGCTCTA-TGCAACTTCAGGGAGATAGGATTCACTATGGTAGATTCAAT-TCGACCCA
1 TTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTCATTATGGTAAATTCAATCT-GACCCA
* * *
75947052 CTACAACTTTAGGGGTATAAGATTTGTAGC
65 CTGCAACTTCAGGGGTATAGGATTTGTAGC
** * *
75947082 TTCAATCTGCTCTACTATAACTTCAGGGAGATAATATTCATTATAGTAAATTCAATCTGACCCAC
1 TTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTCATTATGGTAAATTCAATCTGACCCAC
75947147 TGCAACTTCAGGGGTATAGGATTTGTAGC
66 TGCAACTTCAGGGGTATAGGATTTGTAGC
* *
75947176 TTCAATCTGCTCTACTGTAACTTTAGGG
1 TTCAATCTGCTCTACTGCAACTTCAGGG
75947204 GTATAAAATT
Statistics
Matches: 184, Mismatches: 28, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
93 78 0.42
94 105 0.57
95 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (94 bp):
TTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTCATTATGGTAAATTCAATCTGACCCAC
TGCAACTTCAGGGGTATAGGATTTGTAGC
Found at i:75947198 original size:44 final size:44
Alignment explanation
Indices: 75946958--75947208 Score: 179
Period size: 44 Copynumber: 5.5 Consensus size: 44
75946948 AATCCGATCC
* *
75946958 ACTGTAACTTCAGGGGTATAGGATTTGTAGCTTCAATTTGCTCT
1 ACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTGCTCT
* *
75947002 A-TGCAACTTCAGGGAG-ATAGGATTCACTATGGTAGATTCAAT-TCGAC-CC
1 ACTGCAACTTCAGGG-GTATAGGA-T---T-T-GTAGCTTCAATCT-G-CTCT
* * *
75947051 ACTACAACTTTAGGGGTATAAGATTTGTAGCTTCAATCTGCTCT
1 ACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTGCTCT
** ** ** *
75947095 ACTATAACTTCAGGGAGATAATATTCATTATAGTAAATTCAATCTGAC-CC
1 ACTGCAACTTCAGGG-G-T-ATA-GGATT-T-GTAGCTTCAATCTG-CTCT
75947145 ACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTGCTCT
1 ACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTGCTCT
* *
75947189 ACTGTAACTTTAGGGGTATA
1 ACTGCAACTTCAGGGGTATA
75947209 AAATTTATGG
Statistics
Matches: 162, Mismatches: 24, Indels: 42
0.71 0.11 0.18
Matches are distributed among these distances:
43 20 0.12
44 59 0.36
45 4 0.02
46 5 0.03
47 7 0.04
48 6 0.04
49 17 0.10
50 43 0.27
51 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (44 bp):
ACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTGCTCT
Found at i:75951917 original size:13 final size:13
Alignment explanation
Indices: 75951881--75951916 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
75951871 AAAGTGCTTG
75951881 AAATAATAAAATA
1 AAATAATAAAATA
75951894 AAATAATAAAATA
1 AAATAATAAAATA
75951907 AAA-AATAAAA
1 AAATAATAAAA
75951917 AAAGTAGGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 7 0.30
13 16 0.70
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (13 bp):
AAATAATAAAATA
Found at i:75963712 original size:39 final size:39
Alignment explanation
Indices: 75963419--75963712 Score: 313
Period size: 39 Copynumber: 7.5 Consensus size: 39
75963409 AACCTGGTAA
* * * *
75963419 GCACAAAGCCCGAATAATCA-CTAGCACACAGTCTGCTAG
1 GCACATAGCCCGAATAATCATC-GGCACAAAGCCTGCTAG
* * *
75963458 GCACATAGCCCAAATAATCATCGGCACAAAGCTTGTTAG
1 GCACATAGCCCGAATAATCATCGGCACAAAGCCTGCTAG
* * *
75963497 GCACATAGCTCGAATAATTA-CTGGCACAAAGCCTACTAG
1 GCACATAGCCCGAATAATCATC-GGCACAAAGCCTGCTAG
* * * * *
75963536 ACACATAGCTCAAATAATCATCGACACACAGCCTGCTAG
1 GCACATAGCCCGAATAATCATCGGCACAAAGCCTGCTAG
* * * * *
75963575 ACACATAACCAGAATAATCACCGGTACAAAGCCTGCTAG
1 GCACATAGCCCGAATAATCATCGGCACAAAGCCTGCTAG
* * * * *
75963614 GCACATAACCCGAATAATCACCGGTAAAAAGCCTACTAG
1 GCACATAGCCCGAATAATCATCGGCACAAAGCCTGCTAG
*
75963653 GCACATAGCCCGAATAATCATCGGCACAAAGCCTACTAG
1 GCACATAGCCCGAATAATCATCGGCACAAAGCCTGCTAG
*
75963692 GTACATAGCCCGAATAATCAT
1 GCACATAGCCCGAATAATCAT
75963713 TGGATTTCTA
Statistics
Matches: 216, Mismatches: 36, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
38 1 0.00
39 213 0.99
40 2 0.01
ACGTcount: A:0.38, C:0.28, G:0.16, T:0.18
Consensus pattern (39 bp):
GCACATAGCCCGAATAATCATCGGCACAAAGCCTGCTAG
Found at i:75963902 original size:13 final size:13
Alignment explanation
Indices: 75963884--75963908 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75963874 TAAGTTATAT
75963884 GTGTGAAAATTTC
1 GTGTGAAAATTTC
75963897 GTGTGAAAATTT
1 GTGTGAAAATTT
75963909 GATAGTTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:75965497 original size:41 final size:41
Alignment explanation
Indices: 75965452--75965554 Score: 127
Period size: 41 Copynumber: 2.5 Consensus size: 41
75965442 GGCTATGTGC
* *
75965452 CTAGCAGGCTTAATGCCGGTGAAATAATTCAG-ACTTTACGT
1 CTAGCAGGCTTAATGCCGGTGAAACAATTC-GCACTATACGT
* * *
75965493 CTAGCAGGCTTAATGCCGGTGATACATTTCGCACTATAGGT
1 CTAGCAGGCTTAATGCCGGTGAAACAATTCGCACTATACGT
* *
75965534 CTAGCAGGCTAAAAGCCGGTG
1 CTAGCAGGCTTAATGCCGGTG
75965555 TATCGAATCA
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
40 1 0.02
41 53 0.98
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.26
Consensus pattern (41 bp):
CTAGCAGGCTTAATGCCGGTGAAACAATTCGCACTATACGT
Found at i:75966722 original size:15 final size:14
Alignment explanation
Indices: 75966688--75966717 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
75966678 CCAAGCTTAT
75966688 TATATTTAAATATA
1 TATATTTAAATATA
75966702 TATATTT-AATATA
1 TATATTTAAATATA
75966715 TAT
1 TAT
75966718 GTATTGAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TATATTTAAATATA
Done.