Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 227 of 235
Found at i:76480908 original size:14 final size:15
Alignment explanation
Indices: 76480869--76480910 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
76480859 TTTAAACATA
*
76480869 ATTATTATTAAATAT
1 ATTATAATTAAATAT
76480884 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
76480898 A-TATAATTTAATA
1 ATTATAATTAAATA
76480911 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:76484581 original size:6 final size:6
Alignment explanation
Indices: 76484572--76484600 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
76484562 TTGATGTTGG
76484572 GAGGGA GAGGGA GAGGGA GAGGGA GAGGG
1 GAGGGA GAGGGA GAGGGA GAGGGA GAGGG
76484601 TGGGGAGAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.69, T:0.00
Consensus pattern (6 bp):
GAGGGA
Found at i:76488212 original size:12 final size:12
Alignment explanation
Indices: 76488195--76488224 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
76488185 AAAAATAAAA
76488195 AAATTATTATAT
1 AAATTATTATAT
76488207 AAATTATTATAT
1 AAATTATTATAT
76488219 -AATTAT
1 AAATTAT
76488225 ATTTTTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 6 0.33
12 12 0.67
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
AAATTATTATAT
Found at i:76497290 original size:15 final size:15
Alignment explanation
Indices: 76497255--76497306 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
76497245 TTAAGAATTT
*
76497255 TATTAAATTAT-ATA
1 TATTTAATTATAATA
76497269 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
76497283 TATTTAATAATAAT-
1 TATTTAATTATAATA
76497297 TATGTTAATT
1 TAT-TTAATT
76497307 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:76497334 original size:120 final size:120
Alignment explanation
Indices: 76497130--76497781 Score: 1200
Period size: 120 Copynumber: 5.4 Consensus size: 120
76497120 AATTATTTTA
* * * * *
76497130 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-AATTTATATTT
76497194 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
76497250 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
*
76497315 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATT-TTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
76497369 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
76497434 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
76497489 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
*
76497554 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAT
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
*
76497609 AATTTTATTAAATTATATATTTTATTTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
76497674 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
*
76497729 AATTTTATTAAATTATATATTTTACTTATAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
76497782 TAAATATGAT
Statistics
Matches: 519, Mismatches: 11, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
119 118 0.23
120 399 0.77
121 2 0.00
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
Found at i:76497409 original size:15 final size:15
Alignment explanation
Indices: 76497374--76497425 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
76497364 TTAAGAATTT
*
76497374 TATTAAATTAT-ATA
1 TATTTAATTATAATA
76497388 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
76497402 TATTTAATAATAAT-
1 TATTTAATTATAATA
76497416 TATGTTAATT
1 TAT-TTAATT
76497426 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:76497529 original size:15 final size:15
Alignment explanation
Indices: 76497494--76497545 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
76497484 TTAAGAATTT
*
76497494 TATTAAATTAT-ATA
1 TATTTAATTATAATA
76497508 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
76497522 TATTTAATAATAAT-
1 TATTTAATTATAATA
76497536 TATGTTAATT
1 TAT-TTAATT
76497546 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:76497549 original size:239 final size:240
Alignment explanation
Indices: 76497130--76497781 Score: 1200
Period size: 239 Copynumber: 2.7 Consensus size: 240
76497120 AATTATTTTA
* * * * *
76497130 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-AATTTATATTT
76497194 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATT
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATT
76497259 AAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCA
130 AAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCA
76497324 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATT-TTAAG
195 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
76497369 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
76497434 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTA
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTA
76497499 AATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCAT
131 AATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCAT
* *
76497564 ATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAT
196 ATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
76497609 AATTTTATTAAATTATATATTTTATTTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
76497674 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTA
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTA
*
76497739 AATTATATATTTTACTTATAATATATTTAATAATAATTATGTT
131 AATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
76497782 TAAATATGAT
Statistics
Matches: 402, Mismatches: 9, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
239 225 0.56
240 177 0.44
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (240 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTA
AATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCAT
ATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:76497644 original size:16 final size:17
Alignment explanation
Indices: 76497605--76497646 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
76497595 TATTGATTAT
76497605 TAATA-ATTTTATTAAA
1 TAATATATTTTATTAAA
* *
76497621 TTATATATTTTATT-TA
1 TAATATATTTTATTAAA
76497637 TAATATATTT
1 TAATATATTT
76497647 AATAATAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TAATATATTTTATTAAA
Found at i:76497954 original size:39 final size:40
Alignment explanation
Indices: 76497911--76498015 Score: 115
Period size: 44 Copynumber: 2.5 Consensus size: 40
76497901 TTTCATTATG
76497911 CTATTACACCTCTATTCCATTCAACCAAACACA-AGA-TTA
1 CTATTACACCTCTATTCCATTCAACCAAACA-ATAGATTTA
* * *
76497950 CTATTACGCCTCTATTCCATTACATTCAACCAAACAATTGATTTG
1 CTATTACACCTCTATT-C----CATTCAACCAAACAATAGATTTA
76497995 CTATTACACCTCTATTCCATT
1 CTATTACACCTCTATTCCATT
76498016 ACGCCTCTAA
Statistics
Matches: 55, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
39 15 0.27
40 5 0.09
43 1 0.02
44 17 0.31
45 17 0.31
ACGTcount: A:0.32, C:0.30, G:0.04, T:0.34
Consensus pattern (40 bp):
CTATTACACCTCTATTCCATTCAACCAAACAATAGATTTA
Found at i:76498009 original size:45 final size:44
Alignment explanation
Indices: 76497909--76498017 Score: 131
Period size: 45 Copynumber: 2.6 Consensus size: 44
76497899 TTTTTCATTA
76497909 TGCTATTACACCTCTATT-C----CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
* * *
76497948 TACTATTACGCCTCTATTCCATTACATTCAACCAAACA-ATTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACA-AGA-T
76497993 TGCTATTACACCTCTATTCCATTAC
1 TGCTATTACACCTCTATTCCATTAC
76498018 GCCTCTAATC
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
43 1 0.02
44 16 0.28
45 24 0.41
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
Found at i:76498022 original size:16 final size:16
Alignment explanation
Indices: 76497997--76498045 Score: 80
Period size: 16 Copynumber: 3.1 Consensus size: 16
76497987 TTGATTTGCT
*
76497997 ATTACACCTCTATTCC
1 ATTACGCCTCTATTCC
*
76498013 ATTACGCCTCTAATCC
1 ATTACGCCTCTATTCC
76498029 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
76498045 A
1 A
76498046 ATACAGCGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.24, C:0.37, G:0.04, T:0.35
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:76498545 original size:24 final size:24
Alignment explanation
Indices: 76498516--76498579 Score: 87
Period size: 24 Copynumber: 2.7 Consensus size: 24
76498506 AAAGCTTACA
76498516 AAGAGC-CTGTAACGGGTAGC-CACG
1 AAGAGCACT-TAACGGGTAGCTC-CG
*
76498540 AAGAGCAATTAACGGGTAGCTCCG
1 AAGAGCACTTAACGGGTAGCTCCG
76498564 AAGAGCACTTAACGGG
1 AAGAGCACTTAACGGG
76498580 AAGCACCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
24 34 0.94
25 2 0.06
ACGTcount: A:0.33, C:0.22, G:0.31, T:0.14
Consensus pattern (24 bp):
AAGAGCACTTAACGGGTAGCTCCG
Found at i:76500668 original size:20 final size:21
Alignment explanation
Indices: 76500628--76500668 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
76500618 GCTAAGATTT
76500628 TAAAATATATAAATATTATTA
1 TAAAATATATAAATATTATTA
* *
76500649 TAAAATA-ATATATTTTATTA
1 TAAAATATATAAATATTATTA
76500669 CTTTTAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
TAAAATATATAAATATTATTA
Found at i:76508078 original size:22 final size:22
Alignment explanation
Indices: 76508053--76508096 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
76508043 ACATGCACCA
76508053 AAACAAAGAAATTAAAA-AAACT
1 AAACAAA-AAATTAAAATAAACT
*
76508075 AAACAGAAAATTAAAATAAACT
1 AAACAAAAAATTAAAATAAACT
76508097 TCCAGTCTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.70, C:0.09, G:0.05, T:0.16
Consensus pattern (22 bp):
AAACAAAAAATTAAAATAAACT
Found at i:76514667 original size:34 final size:34
Alignment explanation
Indices: 76514624--76514692 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
76514614 AACATTGACT
*
76514624 AATTTTATAACAGTATATTAAAATAGTATATTAC
1 AATTTTATAACAGTATATTAAAACAGTATATTAC
*
76514658 AATTTTATAACAGTATATTAAACCAGTATATTAC
1 AATTTTATAACAGTATATTAAAACAGTATATTAC
76514692 A
1 A
76514693 TTAATAATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.46, C:0.09, G:0.06, T:0.39
Consensus pattern (34 bp):
AATTTTATAACAGTATATTAAAACAGTATATTAC
Found at i:76514739 original size:13 final size:13
Alignment explanation
Indices: 76514709--76514863 Score: 179
Period size: 13 Copynumber: 11.8 Consensus size: 13
76514699 ATTAAGGTGT
*
76514709 AGTAT-TTATAAC
1 AGTATATTAAAAC
*
76514721 AGTATACTAAAAC
1 AGTATATTAAAAC
*
76514734 ATTATATTAAAAC
1 AGTATATTAAAAC
76514747 AGTATATTAAAAC
1 AGTATATTAAAAC
*
76514760 AGTATATTTATAAC
1 AGTATA-TTAAAAC
*
76514774 AATATATTAAAAC
1 AGTATATTAAAAC
*
76514787 ATTATATTAAAAC
1 AGTATATTAAAAC
76514800 AGTATATTTATAAA-
1 AGTATA-TTA-AAAC
*
76514814 AGTATACTAAAAC
1 AGTATATTAAAAC
76514827 AGTATATTAAAAC
1 AGTATATTAAAAC
* *
76514840 AATATATTAAAAT
1 AGTATATTAAAAC
*
76514853 AGTATAATAAA
1 AGTATATTAAA
76514864 CTAGTTATTT
Statistics
Matches: 122, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
12 8 0.07
13 91 0.75
14 20 0.16
15 3 0.02
ACGTcount: A:0.54, C:0.07, G:0.05, T:0.34
Consensus pattern (13 bp):
AGTATATTAAAAC
Found at i:76514780 original size:40 final size:40
Alignment explanation
Indices: 76514709--76514847 Score: 185
Period size: 40 Copynumber: 3.5 Consensus size: 40
76514699 ATTAAGGTGT
* * * *
76514709 AGTAT-TTATAACAGTATA-CTAAAACATTATATTAAAAC
1 AGTATATTAAAACAGTATATTTATAACAATATATTAAAAC
76514747 AGTATATTAAAACAGTATATTTATAACAATATATTAAAAC
1 AGTATATTAAAACAGTATATTTATAACAATATATTAAAAC
* *
76514787 ATTATATTAAAACAGTATATTTATAA-AAGTATACTAAAAC
1 AGTATATTAAAACAGTATATTTATAACAA-TATATTAAAAC
*
76514827 AGTATATTAAAACAATATATT
1 AGTATATTAAAACAGTATATT
76514848 AAAATAGTAT
Statistics
Matches: 90, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
38 5 0.06
39 14 0.16
40 71 0.79
ACGTcount: A:0.52, C:0.08, G:0.05, T:0.35
Consensus pattern (40 bp):
AGTATATTAAAACAGTATATTTATAACAATATATTAAAAC
Found at i:76514785 original size:53 final size:52
Alignment explanation
Indices: 76514661--76514863 Score: 212
Period size: 53 Copynumber: 3.9 Consensus size: 52
76514651 ATATTACAAT
* * * ** * ***
76514661 TTTATAACAGTATATTAAACCAGTATATTACATTAATA-ATTAAGGTGTAGTA
1 TTTATAACAGTATATTAAAACATTATATTAAAACAGTATATTAAAAAGTA-TA
*
76514713 TTTATAACAGTATACTAAAACATTATATTAAAACAGTATATTAAAACAGTATA
1 TTTATAACAGTATATTAAAACATTATATTAAAACAGTATATTAAAA-AGTATA
*
76514766 TTTATAACAATATATTAAAACATTATATTAAAACAGTATATTTATAAAAGTATA
1 TTTATAACAGTATATTAAAACATTATATTAAAACAGTATA-TTA-AAAAGTATA
* * * * *
76514820 -CTAAAACAGTATATTAAAACAATATATTAAAATAGTATAATAAA
1 TTTATAACAGTATATTAAAACATTATATTAAAACAGTATATTAAA
76514864 CTAGTTATTT
Statistics
Matches: 129, Mismatches: 18, Indels: 9
0.83 0.12 0.06
Matches are distributed among these distances:
51 2 0.02
52 33 0.26
53 79 0.61
54 12 0.09
55 3 0.02
ACGTcount: A:0.51, C:0.07, G:0.06, T:0.35
Consensus pattern (52 bp):
TTTATAACAGTATATTAAAACATTATATTAAAACAGTATATTAAAAAGTATA
Found at i:76516967 original size:25 final size:25
Alignment explanation
Indices: 76516921--76516969 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
76516911 TTAAAAGTTT
*
76516921 AAAAATATAAATTTATGGAAACTTTA
1 AAAAATATAAAATTAT-GAAACTTTA
76516947 AAAAATATAAAATTACT-AAACTT
1 AAAAATATAAAATTA-TGAAACTT
76516970 ATTTAAAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 6 0.29
26 14 0.67
27 1 0.05
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.33
Consensus pattern (25 bp):
AAAAATATAAAATTATGAAACTTTA
Found at i:76519709 original size:25 final size:24
Alignment explanation
Indices: 76519652--76519749 Score: 108
Period size: 25 Copynumber: 4.0 Consensus size: 24
76519642 TACGAGCCAT
* * *
76519652 AATCGGTAAACTCCTTCGAGCTGA
1 AATCGGTAAGCTCATACGAGCTGA
*
76519676 AATATGGTAAGCTCATACGAGCTGA
1 AAT-CGGTAAGCTCATACGAGCTGA
76519701 GAATCGGTAAGCTC-TCACGAGCTGCA
1 -AATCGGTAAGCTCAT-ACGAGCTG-A
*
76519727 AATCGGTAAGCTCATACAAGCTG
1 AATCGGTAAGCTCATACGAGCTG
76519750 TGGTGAGTTT
Statistics
Matches: 63, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
24 4 0.06
25 54 0.86
26 5 0.08
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.22
Consensus pattern (24 bp):
AATCGGTAAGCTCATACGAGCTGA
Found at i:76526053 original size:31 final size:31
Alignment explanation
Indices: 76526015--76526075 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
76526005 TTCCACCATA
*
76526015 ACTGCATGCTAAGATATAGATTGAAGTGTTC
1 ACTGCATGCTAAGATATAGAATGAAGTGTTC
76526046 ACTGCATGCTAAGATATAGAATGAAGTGTT
1 ACTGCATGCTAAGATATAGAATGAAGTGTT
76526076 TGCCTGGTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.31
Consensus pattern (31 bp):
ACTGCATGCTAAGATATAGAATGAAGTGTTC
Found at i:76533199 original size:9 final size:9
Alignment explanation
Indices: 76533164--76533203 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
76533154 AAATAATCAG
76533164 AAAAATATT
1 AAAAATATT
*
76533173 AAATAT-TT
1 AAAAATATT
76533181 AAAAAGTATT
1 AAAAA-TATT
76533191 AAAAATATT
1 AAAAATATT
76533200 AAAA
1 AAAA
76533204 TTGATATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 6 0.22
9 14 0.52
10 7 0.26
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (9 bp):
AAAAATATT
Found at i:76533494 original size:18 final size:17
Alignment explanation
Indices: 76533467--76533502 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
76533457 TAGGCCATTG
*
76533467 ATTTTCCAGTTCGATTA
1 ATTTTCCAGTTCAATTA
76533484 ATTTGTCCAGTTCAATTA
1 ATTT-TCCAGTTCAATTA
76533502 A
1 A
76533503 ATAAAACATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.44
Consensus pattern (17 bp):
ATTTTCCAGTTCAATTA
Found at i:76535237 original size:46 final size:45
Alignment explanation
Indices: 76535170--76535285 Score: 191
Period size: 46 Copynumber: 2.6 Consensus size: 45
76535160 TTTGAGTACT
*
76535170 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTA
76535216 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
*
76535261 TCTGAT-TAGTGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
76535286 ATCATACGTA
Statistics
Matches: 68, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
43 12 0.18
44 6 0.09
45 18 0.26
46 32 0.47
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (45 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
Found at i:76536024 original size:10 final size:9
Alignment explanation
Indices: 76535963--76536057 Score: 57
Period size: 9 Copynumber: 11.2 Consensus size: 9
76535953 ATTAGGTTTA
76535963 TTATAATAT
1 TTATAATAT
*
76535972 TTATAAAAT
1 TTATAATAT
76535981 TT-TCAA-AT
1 TTAT-AATAT
76535989 TTAT-ATCAAT
1 TTATAAT--AT
76535999 TT-TAATAT
1 TTATAATAT
76536007 TT-TAATAT
1 TTATAATAT
76536015 TTAATAATAT
1 TT-ATAATAT
*
76536025 TTAT-ATCT
1 TTATAATAT
76536033 TT-T--T-T
1 TTATAATAT
*
76536038 TTATAATTT
1 TTATAATAT
76536047 TTATAATAT
1 TTATAATAT
76536056 TT
1 TT
76536058 TTATGAAAAA
Statistics
Matches: 71, Mismatches: 3, Indels: 24
0.72 0.03 0.24
Matches are distributed among these distances:
5 3 0.04
6 2 0.03
7 2 0.03
8 23 0.32
9 27 0.38
10 14 0.20
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (9 bp):
TTATAATAT
Found at i:76536026 original size:26 final size:28
Alignment explanation
Indices: 76535959--76536029 Score: 78
Period size: 26 Copynumber: 2.6 Consensus size: 28
76535949 ATTTATTAGG
76535959 TTTATTATAATATTTATAAAATTTTCAAA
1 TTTA-TATAATATTTATAAAATTTTCAAA
* *
76535988 TTTATATCA-ATTT-TAATATTTT-AATA
1 TTTATATAATATTTATAAAATTTTCAA-A
76536014 TTTA-ATAATATTTATA
1 TTTATATAATATTTATA
76536030 TCTTTTTTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
25 5 0.14
26 17 0.47
27 6 0.17
28 4 0.11
29 4 0.11
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (28 bp):
TTTATATAATATTTATAAAATTTTCAAA
Found at i:76536058 original size:75 final size:76
Alignment explanation
Indices: 76535892--76536058 Score: 187
Period size: 75 Copynumber: 2.2 Consensus size: 76
76535882 TTACAAATAC
* * * *
76535892 ATTTTTATAAAATTTTAAATATGTTTTATTAATTTTATATTTTTATGATTTATTAAAATTTATTA
1 ATTTTTATAAAATTTTAAATATGTTATATCAATTTTATATTTTAATGATTTAATAAAATTTATTA
76535957 GGTTTATTATA
66 GGTTTATTATA
* * *
76535968 ATATTTATAAAATTTTCAA-AT-TTATATCAATTTTAATATTTTAAT-ATTTAATAATATTTATA
1 ATTTTTATAAAATTTTAAATATGTTATATCAATTTT-ATATTTTAATGATTTAATAAAATTTAT-
*** *
76536030 TCTTTTTTTTATA
64 TAGGTTTATTATA
*
76536043 ATTTTTATAATATTTT
1 ATTTTTATAAAATTTT
76536059 TATGAAAAAT
Statistics
Matches: 76, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
74 25 0.33
75 34 0.45
76 17 0.22
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (76 bp):
ATTTTTATAAAATTTTAAATATGTTATATCAATTTTATATTTTAATGATTTAATAAAATTTATTA
GGTTTATTATA
Found at i:76536207 original size:19 final size:19
Alignment explanation
Indices: 76536180--76536217 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
76536170 TTTAATTGAT
*
76536180 TATTTAATATAAATATAAA
1 TATTAAATATAAATATAAA
*
76536199 TATTAAATATTAATATAAA
1 TATTAAATATAAATATAAA
76536218 ATTTATTGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
TATTAAATATAAATATAAA
Found at i:76536298 original size:21 final size:21
Alignment explanation
Indices: 76536268--76536307 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
76536258 TTTTATTTAA
76536268 TATTAATATAAATTTTAAATT
1 TATTAATATAAATTTTAAATT
* **
76536289 TATTATTATATTTTTTAAA
1 TATTAATATAAATTTTAAA
76536308 AATATTTATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
TATTAATATAAATTTTAAATT
Found at i:76536313 original size:21 final size:21
Alignment explanation
Indices: 76536266--76536325 Score: 52
Period size: 21 Copynumber: 2.9 Consensus size: 21
76536256 TTTTTTATTT
* **
76536266 AATATTAATATAAATTTTAAA
1 AATATTATTATATTTTTTAAA
**
76536287 TTTATTATTATATTTTTTAAA
1 AATATTATTATATTTTTTAAA
76536308 AATA-T-TTATATGTTTTTA
1 AATATTATTATAT-TTTTTA
76536326 TATTTTTAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
19 6 0.19
20 7 0.23
21 18 0.58
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
AATATTATTATATTTTTTAAA
Found at i:76546427 original size:5 final size:5
Alignment explanation
Indices: 76546417--76546452 Score: 63
Period size: 5 Copynumber: 7.2 Consensus size: 5
76546407 CAGCGAAACC
*
76546417 TTACA TTACA TTACA TTACA CTACA TTACA TTACA T
1 TTACA TTACA TTACA TTACA TTACA TTACA TTACA T
76546453 GTTAGTGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.39, C:0.22, G:0.00, T:0.39
Consensus pattern (5 bp):
TTACA
Found at i:76561179 original size:50 final size:50
Alignment explanation
Indices: 76561071--76561367 Score: 301
Period size: 50 Copynumber: 5.8 Consensus size: 50
76561061 ATTTGGGTAA
* * *
76561071 AGAGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATG
* * * *
76561127 AGAGGTCCCATGTAAAACCATGTCTGGGACATAGCGTTCGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
*
76561177 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * ** * *
76561227 AGAGGTCCCCTGTAAGATCATGTCTATGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * * *
76561277 AGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA--GTACAGG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATG
* ** *
76561326 AAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
76561368 TGTTATTATC
Statistics
Matches: 204, Mismatches: 36, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
48 1 0.00
49 39 0.19
50 124 0.61
53 3 0.01
55 1 0.00
56 36 0.18
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:76563460 original size:30 final size:31
Alignment explanation
Indices: 76563414--76563474 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 31
76563404 GGGAGGTGGG
*
76563414 ATGGGAAGGGAATAAAAGTTTTAGGGGAAAA
1 ATGGGAAGGGAATAAAAATTTTAGGGGAAAA
* *
76563445 ATGGG-AGGGAGTAAAAATTTTGGGGGAAAA
1 ATGGGAAGGGAATAAAAATTTTAGGGGAAAA
76563475 TAAAAGGTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.43, C:0.00, G:0.38, T:0.20
Consensus pattern (31 bp):
ATGGGAAGGGAATAAAAATTTTAGGGGAAAA
Found at i:76563619 original size:30 final size:31
Alignment explanation
Indices: 76563573--76563634 Score: 90
Period size: 30 Copynumber: 2.0 Consensus size: 31
76563563 ATTGGGGGGT
* * *
76563573 TGGGAGGGGAGTAAAAGTTTTGGGGGGAAAG
1 TGGGAAGGGAGTAAAAGTTTTGAGGGAAAAG
76563604 TGGGAAGGG-GTAAAAGTTTTGAGGGAAAAG
1 TGGGAAGGGAGTAAAAGTTTTGAGGGAAAAG
76563634 T
1 T
76563635 AAAAAGGTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 20 0.71
31 8 0.29
ACGTcount: A:0.32, C:0.00, G:0.47, T:0.21
Consensus pattern (31 bp):
TGGGAAGGGAGTAAAAGTTTTGAGGGAAAAG
Found at i:76564919 original size:66 final size:66
Alignment explanation
Indices: 76564813--76564941 Score: 249
Period size: 66 Copynumber: 2.0 Consensus size: 66
76564803 CATTTCAGAG
*
76564813 AGCACACTCCCGCGAACCTCATCCTTACAGTGGGATTACCAGTCCAGGCTAAATCCCCTGCAAGA
1 AGCACACTCCCGCGAACCTCATCCTTACAGCGGGATTACCAGTCCAGGCTAAATCCCCTGCAAGA
76564878 T
66 T
76564879 AGCACACTCCCGCGAACCTCATCCTTACAGCGGGATTACCAGTCCAGGCTAAATCCCCTGCAA
1 AGCACACTCCCGCGAACCTCATCCTTACAGCGGGATTACCAGTCCAGGCTAAATCCCCTGCAA
76564942 TATAAACTCA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.27, C:0.36, G:0.18, T:0.19
Consensus pattern (66 bp):
AGCACACTCCCGCGAACCTCATCCTTACAGCGGGATTACCAGTCCAGGCTAAATCCCCTGCAAGA
T
Found at i:76565153 original size:57 final size:60
Alignment explanation
Indices: 76565060--76565207 Score: 214
Period size: 57 Copynumber: 2.5 Consensus size: 60
76565050 ACCCTAATTC
* * *
76565060 GGATTACCCGTCCGGGCTAAATCCATTTTCCACATATTCTTCGGGAGGGCTATATC-A-A
1 GGATCACCCGTCCGGGCTAGATCCTTTTTCCACATATTCTTCGGGAGGGCTATATCGATA
76565118 -GATCACCCGTCCGGGCTAGAT-CTTTTTCACACATATTCTTCGGGAGGGCTATATCAGGATA
1 GGATCACCCGTCCGGGCTAGATCCTTTTTC-CACATATTCTTCGGGAGGGCTATATC--GATA
76565179 GGATCACCCGTCCGGGCTAGATCCTTTTT
1 GGATCACCCGTCCGGGCTAGATCCTTTTT
76565208 ACCGTCAATT
Statistics
Matches: 80, Mismatches: 3, Indels: 9
0.87 0.03 0.10
Matches are distributed among these distances:
56 6 0.08
57 45 0.56
60 1 0.01
61 1 0.01
62 21 0.26
63 6 0.08
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (60 bp):
GGATCACCCGTCCGGGCTAGATCCTTTTTCCACATATTCTTCGGGAGGGCTATATCGATA
Found at i:76576569 original size:20 final size:20
Alignment explanation
Indices: 76576537--76576582 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
76576527 TTGTGTAAAT
76576537 TTAATT-TTAATATTAAAAA
1 TTAATTCTTAATATTAAAAA
* * *
76576556 TTAATTCTTTATATTTATAA
1 TTAATTCTTAATATTAAAAA
76576576 TTAATTC
1 TTAATTC
76576583 AATTTAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.54
Consensus pattern (20 bp):
TTAATTCTTAATATTAAAAA
Found at i:76576633 original size:15 final size:15
Alignment explanation
Indices: 76576613--76576645 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
76576603 ATCTTTACTT
76576613 TAAACTTAA-ACAATA
1 TAAACTTAATA-AATA
76576628 TAAACTTAATAAATA
1 TAAACTTAATAAATA
76576643 TAA
1 TAA
76576646 GTTTATTGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 16 0.94
16 1 0.06
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (15 bp):
TAAACTTAATAAATA
Found at i:76581214 original size:26 final size:26
Alignment explanation
Indices: 76581177--76581227 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
76581167 TGTTGCCATA
76581177 ATCTGTTCGATTATTTACAGTTATAT
1 ATCTGTTCGATTATTTACAGTTATAT
*
76581203 ATCTGTTTGATTATTTACAGTTATA
1 ATCTGTTCGATTATTTACAGTTATA
76581228 GATAATCTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.10, G:0.12, T:0.51
Consensus pattern (26 bp):
ATCTGTTCGATTATTTACAGTTATAT
Found at i:76590187 original size:5 final size:5
Alignment explanation
Indices: 76590179--76590203 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
76590169 ACTCCGCTTC
76590179 AATTT AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT AATTT AATTT
76590204 TTACTAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:76596607 original size:38 final size:38
Alignment explanation
Indices: 76596584--76596661 Score: 120
Period size: 38 Copynumber: 2.1 Consensus size: 38
76596574 ATCCATCGTT
*
76596584 ATAATGCATGATTAAATTGATAATCAAAATATATCCAA
1 ATAATGCATGATTAAATTGATAATCAAAATACATCCAA
* * *
76596622 ATAATGCATGATTAAATTGATAATTAGAATATATCCAA
1 ATAATGCATGATTAAATTGATAATCAAAATACATCCAA
76596660 AT
1 AT
76596662 CTAATCAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.49, C:0.09, G:0.09, T:0.33
Consensus pattern (38 bp):
ATAATGCATGATTAAATTGATAATCAAAATACATCCAA
Found at i:76600702 original size:9 final size:9
Alignment explanation
Indices: 76600688--76600723 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
76600678 GGTCATGGTA
76600688 TATGAAAGT
1 TATGAAAGT
76600697 TATGAAAGT
1 TATGAAAGT
*
76600706 TATGAAAGA
1 TATGAAAGT
76600715 TATGAAAGT
1 TATGAAAGT
76600724 CCGCACAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.47, C:0.00, G:0.22, T:0.31
Consensus pattern (9 bp):
TATGAAAGT
Found at i:76604625 original size:20 final size:19
Alignment explanation
Indices: 76604599--76604638 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
76604589 TTTAAACACC
*
76604599 TTAAAAACTATTTAAATAAAT
1 TTAAAAA-TATATAAA-AAAT
76604620 TTAAAAATATATAAAAAAT
1 TTAAAAATATATAAAAAAT
76604639 ATTTTTGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
20 7 0.39
21 7 0.39
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (19 bp):
TTAAAAATATATAAAAAAT
Found at i:76611297 original size:6 final size:6
Alignment explanation
Indices: 76611288--76611321 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
76611278 TTGTATGAGC
* *
76611288 ATGAGT ATGACT ATGACT ATGAAT ATGACT ATGA
1 ATGACT ATGACT ATGACT ATGACT ATGACT ATGA
76611322 ACATCTAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.38, C:0.09, G:0.21, T:0.32
Consensus pattern (6 bp):
ATGACT
Found at i:76636455 original size:20 final size:19
Alignment explanation
Indices: 76636427--76636473 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
76636417 TTTTCAAAAT
*
76636427 TTTTGTTTAATTTGAAATAAA
1 TTTT-TTTAA-TTCAAATAAA
*
76636448 TTTTTTTAATTCAATTAAA
1 TTTTTTTAATTCAAATAAA
76636467 TTTTTTT
1 TTTTTTT
76636474 TGTACTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 15 0.62
20 5 0.21
21 4 0.17
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (19 bp):
TTTTTTTAATTCAAATAAA
Found at i:76636474 original size:20 final size:21
Alignment explanation
Indices: 76636423--76636474 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
76636413 TTTATTTTCA
*
76636423 AAATTTTTGTTTAATTTGAAAT
1 AAATTTTT-TTTAATTTCAAAT
*
76636445 AAA-TTTTTTTAA-TTCAATT
1 AAATTTTTTTTAATTTCAAAT
76636464 AAATTTTTTTT
1 AAATTTTTTTT
76636475 GTACTTAACT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 8 0.30
20 12 0.44
21 4 0.15
22 3 0.11
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.60
Consensus pattern (21 bp):
AAATTTTTTTTAATTTCAAAT
Found at i:76638484 original size:20 final size:20
Alignment explanation
Indices: 76638447--76638484 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
76638437 GAAATAGGAA
*
76638447 AAAAATAAAATAACAATGAC
1 AAAAATAAAAGAACAATGAC
76638467 AAAAA-AAAAGAACGAATG
1 AAAAATAAAAGAAC-AATG
76638485 GAAGATGACA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.71, C:0.08, G:0.11, T:0.11
Consensus pattern (20 bp):
AAAAATAAAAGAACAATGAC
Found at i:76653163 original size:27 final size:27
Alignment explanation
Indices: 76653123--76653189 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 27
76653113 TTCCAGTAGG
* * *
76653123 CTATCCTGTATTTCATGTCCTAACAGA
1 CTATCCCGTGTTTCATATCCTAACAGA
*
76653150 CTATCCCGTGTTTCTTATCCTAACAGA
1 CTATCCCGTGTTTCATATCCTAACAGA
*
76653177 CTATCCCATGTTT
1 CTATCCCGTGTTT
76653190 TCTATCCCAG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.22, C:0.28, G:0.10, T:0.39
Consensus pattern (27 bp):
CTATCCCGTGTTTCATATCCTAACAGA
Found at i:76653204 original size:27 final size:27
Alignment explanation
Indices: 76653144--76653208 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
76653134 TTCATGTCCT
* *
76653144 AACAGACTATCCCGTGTTTCTTATCCT
1 AACAGACTATCCCATGTTTCTTATCCC
76653171 AACAGACTATCCCATGTTT-TCTATCCC
1 AACAGACTATCCCATGTTTCT-TATCCC
**
76653198 AGTAGACTATC
1 AACAGACTATC
76653209 GTGTGTTTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 1 0.03
27 32 0.97
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (27 bp):
AACAGACTATCCCATGTTTCTTATCCC
Found at i:76653366 original size:26 final size:26
Alignment explanation
Indices: 76653286--76653423 Score: 96
Period size: 27 Copynumber: 5.2 Consensus size: 26
76653276 CTCAGCGAAT
* *
76653286 TATCTCGTATTTTTTATTTCGACGGAC
1 TATCCCGTA-TTTTTATCTCGACGGAC
* * *
76653313 TATCCCGTATTTCCTATCTTGACAGAC
1 TATCCCGTATTT-TTATCTCGACGGAC
* *
76653340 TATCCCGTGTTTTTATCTCGATGGAC
1 TATCCCGTATTTTTATCTCGACGGAC
** * * * *
76653366 TATCATGTATTTCCTATATCAACAGAC
1 TATCCCGTATTT-TTATCTCGACGGAC
* * *
76653393 TATCCCGTGTTTCTTATCCCGTCGGAC
1 TATCCCGTATTT-TTATCTCGACGGAC
76653420 TATC
1 TATC
76653424 TGGTTTTTTT
Statistics
Matches: 82, Mismatches: 27, Indels: 4
0.73 0.24 0.04
Matches are distributed among these distances:
26 22 0.27
27 60 0.73
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.41
Consensus pattern (26 bp):
TATCCCGTATTTTTATCTCGACGGAC
Found at i:76653367 original size:53 final size:53
Alignment explanation
Indices: 76653296--76653423 Score: 159
Period size: 53 Copynumber: 2.4 Consensus size: 53
76653286 TATCTCGTAT
* * * * **
76653296 TTTTTATTTCGACGGACTATCCCGTATTTCCTATCTTGACAGACTATCCCGTG
1 TTTTTATCTCGATGGACTATCACGTATTTCCTATATCAACAGACTATCCCGTG
*
76653349 TTTTTATCTCGATGGACTATCATGTATTTCCTATATCAACAGACTATCCCGTG
1 TTTTTATCTCGATGGACTATCACGTATTTCCTATATCAACAGACTATCCCGTG
*
76653402 TTTCTTATCCCG-TCGGACTATC
1 TTT-TTATCTCGAT-GGACTATC
76653424 TGGTTTTTTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
53 50 0.77
54 15 0.23
ACGTcount: A:0.20, C:0.26, G:0.14, T:0.40
Consensus pattern (53 bp):
TTTTTATCTCGATGGACTATCACGTATTTCCTATATCAACAGACTATCCCGTG
Found at i:76656407 original size:19 final size:20
Alignment explanation
Indices: 76656368--76656409 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
76656358 TGTATTTTCC
* *
76656368 AAAATAAAAAACAACATTAA
1 AAAATAAAAAACAAAAGTAA
76656388 AAAATAAAAAA-AAAAGTAA
1 AAAATAAAAAACAAAAGTAA
76656407 AAA
1 AAA
76656410 TTATAAATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.81, C:0.05, G:0.02, T:0.12
Consensus pattern (20 bp):
AAAATAAAAAACAAAAGTAA
Found at i:76658044 original size:21 final size:23
Alignment explanation
Indices: 76657992--76658045 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
76657982 CTCCTTTTCT
*
76657992 TTTCTTTT-TACATTAATTTTGA
1 TTTCTTTTATACATTAAATTTGA
76658014 TTT-TTATTATAC-TTAAATTT-A
1 TTTCTT-TTATACATTAAATTTGA
76658035 TTTCTTTTATA
1 TTTCTTTTATA
76658046 AAATTATTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
21 11 0.39
22 14 0.50
23 3 0.11
ACGTcount: A:0.26, C:0.07, G:0.02, T:0.65
Consensus pattern (23 bp):
TTTCTTTTATACATTAAATTTGA
Found at i:76662890 original size:18 final size:18
Alignment explanation
Indices: 76662864--76662902 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
76662854 TTGTTGTTAT
*
76662864 TATATTTAATATTATATA
1 TATAGTTAATATTATATA
76662882 TATAGTTAATATTATATA
1 TATAGTTAATATTATATA
76662900 TAT
1 TAT
76662903 TTACTATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (18 bp):
TATAGTTAATATTATATA
Found at i:76662925 original size:15 final size:18
Alignment explanation
Indices: 76662888--76662939 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
76662878 TATATATAGT
*
76662888 TAATATTATATATATTTACTA
1 TAATATTAT-TTTA-TTA-TA
*
76662909 TAA-ATTTTTTTATTATA
1 TAATATTATTTTATTATA
76662926 TAATATTATTTTAT
1 TAATATTATTTTAT
76662940 GTATTCATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
17 5 0.19
18 12 0.44
19 3 0.11
20 4 0.15
21 3 0.11
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (18 bp):
TAATATTATTTTATTATA
Found at i:76663038 original size:27 final size:30
Alignment explanation
Indices: 76663002--76663057 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
76662992 TGGCATAATT
*
76663002 TATACTTTTTTTGT-T-CATATATATATAA
1 TATACTTTTTTAGTATGCATATATATATAA
*
76663030 TATA-TTTTTTAGTATGCATATGTATATA
1 TATACTTTTTTAGTATGCATATATATATA
76663058 TATTAATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 8 0.33
28 5 0.21
29 11 0.46
ACGTcount: A:0.32, C:0.05, G:0.07, T:0.55
Consensus pattern (30 bp):
TATACTTTTTTAGTATGCATATATATATAA
Found at i:76674683 original size:2 final size:2
Alignment explanation
Indices: 76674676--76674700 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
76674666 AAAAGAATAG
76674676 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
76674701 GAATTTAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:76678753 original size:28 final size:29
Alignment explanation
Indices: 76678689--76678753 Score: 73
Period size: 28 Copynumber: 2.3 Consensus size: 29
76678679 GTCGATACTT
* *
76678689 TATATTTATACAAATTTTGGTATATTTAA
1 TATATTTGTACAAATTTTGATATATTTAA
*
76678718 TGA-A-TTGTATAAATTTTGATATA-TTAA
1 T-ATATTTGTACAAATTTTGATATATTTAA
76678745 TATATTTGT
1 TATATTTGT
76678754 GTTTTTACTA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
26 1 0.03
27 6 0.20
28 20 0.67
29 2 0.07
30 1 0.03
ACGTcount: A:0.37, C:0.02, G:0.09, T:0.52
Consensus pattern (29 bp):
TATATTTGTACAAATTTTGATATATTTAA
Found at i:76683582 original size:49 final size:47
Alignment explanation
Indices: 76683470--76683605 Score: 137
Period size: 49 Copynumber: 2.8 Consensus size: 47
76683460 TTACACAAAA
* *
76683470 TGGCAGACATGATGGACCACTGGTAGGGCATGCTAGTTGCTAACCAGG
1 TGGCAGA-ATGATGGGCCACTGGTAGGGCATGTTAGTTGCTAACCAGG
* * ** *
76683518 TGGGAGAATAAGATGGGCCATTGGTAGGGCATGTTAGTTGCTAATTAGAT
1 TGGCAGAAT--GATGGGCCACTGGTAGGGCATGTTAGTTGCTAACCAG-G
* * *
76683568 TGGCATGAATGATGGGCCACTAGTAAGGTATGTTAGTT
1 TGGCA-GAATGATGGGCCACTGGTAGGGCATGTTAGTT
76683606 ACAAACCATA
Statistics
Matches: 72, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
47 2 0.03
48 6 0.08
49 56 0.78
50 4 0.06
51 4 0.06
ACGTcount: A:0.26, C:0.13, G:0.33, T:0.27
Consensus pattern (47 bp):
TGGCAGAATGATGGGCCACTGGTAGGGCATGTTAGTTGCTAACCAGG
Found at i:76688908 original size:22 final size:22
Alignment explanation
Indices: 76688877--76688920 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
76688867 TACACCAAAA
* *
76688877 TAGGCTTTTAGCGGCGCTTTTT
1 TAGGCCTTTAGCAGCGCTTTTT
76688899 TAGGCCTTTAGCAGCGCTTTTT
1 TAGGCCTTTAGCAGCGCTTTTT
76688921 AGCTCCGCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.11, C:0.20, G:0.25, T:0.43
Consensus pattern (22 bp):
TAGGCCTTTAGCAGCGCTTTTT
Found at i:76689157 original size:43 final size:43
Alignment explanation
Indices: 76689068--76689208 Score: 111
Period size: 43 Copynumber: 3.3 Consensus size: 43
76689058 TAAGTGGAAG
* * * * * * *
76689068 CGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTTTGCGAGATA
1 CGCCACTAAAGATCAGGGTCTTTAGCAGCGCTTTTCCCACAAA
*
76689111 CGCCACTAAAGATTAGGGTCTTTAGCAGCGCTTTTCCCACAAA
1 CGCCACTAAAGATCAGGGTCTTTAGCAGCGCTTTTCCCACAAA
* * * ** * * * ***
76689154 CGCCGCAAAAGACCCTGATCTATAGCGGCGCTTCGACCACAAA
1 CGCCACTAAAGATCAGGGTCTTTAGCAGCGCTTTTCCCACAAA
76689197 CGCCACTAAAGA
1 CGCCACTAAAGA
76689209 ACCAAATCTT
Statistics
Matches: 76, Mismatches: 22, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
43 76 1.00
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (43 bp):
CGCCACTAAAGATCAGGGTCTTTAGCAGCGCTTTTCCCACAAA
Found at i:76689223 original size:43 final size:43
Alignment explanation
Indices: 76689129--76689229 Score: 112
Period size: 43 Copynumber: 2.3 Consensus size: 43
76689119 AAGATTAGGG
* *** * * **
76689129 TCTTTAGCAGCGCTTTTCCCACAAACGCCGCAAAAGACCCTGA
1 TCTTTAGCGGCGCTTCGACCACAAACGCCACAAAAGAACCAAA
* *
76689172 TCTATAGCGGCGCTTCGACCACAAACGCCACTAAAGAACCAAA
1 TCTTTAGCGGCGCTTCGACCACAAACGCCACAAAAGAACCAAA
76689215 TCTTTAGCGGCGCTT
1 TCTTTAGCGGCGCTT
76689230 TAAAAAGAAA
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.29, C:0.33, G:0.18, T:0.21
Consensus pattern (43 bp):
TCTTTAGCGGCGCTTCGACCACAAACGCCACAAAAGAACCAAA
Found at i:76689651 original size:21 final size:21
Alignment explanation
Indices: 76689556--76689648 Score: 123
Period size: 21 Copynumber: 4.4 Consensus size: 21
76689546 TTTGACACTG
*
76689556 CTCTGCTTCCCTCGCTACAGC
1 CTCTACTTCCCTCGCTACAGC
*
76689577 CTCTACTTCCCTCGCTATAGC
1 CTCTACTTCCCTCGCTACAGC
*
76689598 CTCTACTTCCCTCGCTGCAGC
1 CTCTACTTCCCTCGCTACAGC
* * *
76689619 CTGTACTTCTCTCGCTACCGC
1 CTCTACTTCCCTCGCTACAGC
*
76689640 CTCTGCTTC
1 CTCTACTTC
76689649 TCTTTCTGCC
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 62 1.00
ACGTcount: A:0.10, C:0.45, G:0.13, T:0.32
Consensus pattern (21 bp):
CTCTACTTCCCTCGCTACAGC
Found at i:76689736 original size:66 final size:66
Alignment explanation
Indices: 76689654--76689779 Score: 168
Period size: 66 Copynumber: 1.9 Consensus size: 66
76689644 GCTTCTCTTT
76689654 CTGCCGCATCTGCTTTAAGCTGCT-GCTAG-AGTTATTCATA-CTTTCGTTGAACCTCAGCTTAT
1 CTGCCGCATCTGCTTTAAGCTG-TAGCT-GTAGTTATTCATATCTTT-GTTGAACCTCAGCTTAT
76689716 CTCA
63 CTCA
* * * *
76689720 CTGCTGCATCTGCTTTAAGTTGTAGCTGTAGTTCTTCATATCTTTTTTGAACCTCAGCTT
1 CTGCCGCATCTGCTTTAAGCTGTAGCTGTAGTTATTCATATCTTTGTTGAACCTCAGCTT
76689780 CACCTCAGTT
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
65 2 0.04
66 47 0.89
67 4 0.08
ACGTcount: A:0.18, C:0.25, G:0.17, T:0.40
Consensus pattern (66 bp):
CTGCCGCATCTGCTTTAAGCTGTAGCTGTAGTTATTCATATCTTTGTTGAACCTCAGCTTATCTC
A
Found at i:76691970 original size:16 final size:16
Alignment explanation
Indices: 76691949--76691981 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
76691939 GCATAACTCA
*
76691949 ATTATGTAAGTTGTGT
1 ATTATGTAAGTTATGT
76691965 ATTATGTAAGTTATGT
1 ATTATGTAAGTTATGT
76691981 A
1 A
76691982 GGCTATGCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.21, T:0.48
Consensus pattern (16 bp):
ATTATGTAAGTTATGT
Found at i:76691978 original size:9 final size:9
Alignment explanation
Indices: 76691950--76692220 Score: 117
Period size: 9 Copynumber: 31.2 Consensus size: 9
76691940 CATAACTCAA
76691950 TTATGTAAG
1 TTATGTAAG
*
76691959 TTGTGT-A-
1 TTATGTAAG
76691966 TTATGTAAG
1 TTATGTAAG
*
76691975 TTATGTAGG
1 TTATGTAAG
* * *
76691984 CTATGCATG
1 TTATGTAAG
*
76691993 TTAAGTAAG
1 TTATGTAAG
*
76692002 TAATGT-A-
1 TTATGTAAG
76692009 TTATGTAAG
1 TTATGTAAG
*
76692018 TTGTGT-A-
1 TTATGTAAG
* *
76692025 TAATGTTAG
1 TTATGTAAG
**
76692034 TTATCAAAG
1 TTATGTAAG
76692043 TTATGT-A-
1 TTATGTAAG
76692050 TTATGTAAG
1 TTATGTAAG
*
76692059 TTATTTAAG
1 TTATGTAAG
76692068 TTATGTAAG
1 TTATGTAAG
**
76692077 TGGTGT-A-
1 TTATGTAAG
76692084 TTATGTAAG
1 TTATGTAAG
*
76692093 TTAAGTAAG
1 TTATGTAAG
*
76692102 TTATGTAGG
1 TTATGTAAG
* *
76692111 CTACGT-A-
1 TTATGTAAG
*
76692118 TTATGCTAGTTAT
1 TTATG-TA---AG
76692131 TTATGTAAG
1 TTATGTAAG
**
76692140 TGGTGT-A-
1 TTATGTAAG
76692147 TTATGTAAG
1 TTATGTAAG
76692156 TTATGTAAG
1 TTATGTAAG
*
76692165 TTATGTAGG
1 TTATGTAAG
*
76692174 CTATGT-A-
1 TTATGTAAG
*
76692181 TTATCTAAG
1 TTATGTAAG
*
76692190 TTTTTATGTTA-
1 ---TTATGTAAG
76692201 TTATGTAAG
1 TTATGTAAG
*
76692210 TTATGCAAG
1 TTATGTAAG
76692219 TT
1 TT
76692221 TCTATATAAG
Statistics
Matches: 188, Mismatches: 50, Indels: 48
0.66 0.17 0.17
Matches are distributed among these distances:
7 35 0.19
8 21 0.11
9 118 0.63
12 9 0.05
13 5 0.03
ACGTcount: A:0.30, C:0.03, G:0.22, T:0.45
Consensus pattern (9 bp):
TTATGTAAG
Found at i:76692070 original size:34 final size:34
Alignment explanation
Indices: 76692032--76692105 Score: 94
Period size: 34 Copynumber: 2.2 Consensus size: 34
76692022 GTATAATGTT
* **
76692032 AGTTATCAAAGTTATGTATTATGTAAGTTATTTA
1 AGTTATCAAAGTGATGTATTATGTAAGTTAAGTA
** *
76692066 AGTTATGTAAGTGGTGTATTATGTAAGTTAAGTA
1 AGTTATCAAAGTGATGTATTATGTAAGTTAAGTA
76692100 AGTTAT
1 AGTTAT
76692106 GTAGGCTACG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.34, C:0.01, G:0.20, T:0.45
Consensus pattern (34 bp):
AGTTATCAAAGTGATGTATTATGTAAGTTAAGTA
Found at i:76692108 original size:25 final size:26
Alignment explanation
Indices: 76691966--76692109 Score: 93
Period size: 25 Copynumber: 5.7 Consensus size: 26
76691956 AAGTTGTGTA
* * * *
76691966 TTATGTAAGTTATGTAGGCTATGCATG
1 TTATGTAAGTAATGTA-GTTATGTAAG
*
76691993 TTAAGTAAGTAATGTA-TTATGTAAG
1 TTATGTAAGTAATGTAGTTATGTAAG
* **
76692018 TTGTGT-A-TAATGTTAGTTATCAAAG
1 TTATGTAAGTAATG-TAGTTATGTAAG
* *
76692043 TTATGT-A-TTATGTAAGTTATTTAAG
1 TTATGTAAGTAATGT-AGTTATGTAAG
**
76692068 TTATGTAAGTGGTGTA-TTATGTAAG
1 TTATGTAAGTAATGTAGTTATGTAAG
* *
76692093 TTAAGTAAGTTATGTAG
1 TTATGTAAGTAATGTAG
76692110 GCTACGTATT
Statistics
Matches: 92, Mismatches: 19, Indels: 13
0.74 0.15 0.10
Matches are distributed among these distances:
23 5 0.05
24 4 0.04
25 63 0.68
26 2 0.02
27 18 0.20
ACGTcount: A:0.32, C:0.02, G:0.22, T:0.44
Consensus pattern (26 bp):
TTATGTAAGTAATGTAGTTATGTAAG
Found at i:76692153 original size:63 final size:62
Alignment explanation
Indices: 76692068--76692198 Score: 219
Period size: 63 Copynumber: 2.1 Consensus size: 62
76692058 GTTATTTAAG
76692068 TTATGTAAGTGGTGTATTATGTAAGTTAAGTAAGTTATGTAGGCTACGTATTATGCT-AGTTAT
1 TTATGTAAGTGGTGTATTATGTAAGTTAAGTAAGTTATGTAGGCTACGTATTAT-CTAAGTT-T
* *
76692131 TTATGTAAGTGGTGTATTATGTAAGTTATGTAAGTTATGTAGGCTATGTATTATCTAAGTTT
1 TTATGTAAGTGGTGTATTATGTAAGTTAAGTAAGTTATGTAGGCTACGTATTATCTAAGTTT
76692193 TTATGT
1 TTATGT
76692199 TATTATGTAA
Statistics
Matches: 65, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
62 9 0.14
63 56 0.86
ACGTcount: A:0.27, C:0.04, G:0.23, T:0.46
Consensus pattern (62 bp):
TTATGTAAGTGGTGTATTATGTAAGTTAAGTAAGTTATGTAGGCTACGTATTATCTAAGTTT
Found at i:76692181 original size:34 final size:33
Alignment explanation
Indices: 76692044--76692191 Score: 144
Period size: 34 Copynumber: 4.5 Consensus size: 33
76692034 TTATCAAAGT
* *
76692044 TATGTATTATGTAAGTTATTTAAGTTATGTAAG
1 TATGTATTATGTAAGTTATGTAAGTTATGTAGG
* *
76692077 TGGTGTATTATGTAAGTTAAGTAAGTTATGTAGG
1 T-ATGTATTATGTAAGTTATGTAAGTTATGTAGG
* * * *
76692111 CTACGTATTATGCT-AGTTATTTATG-TAAGT-GG
1 -TATGTATTATG-TAAGTTATGTAAGTTATGTAGG
76692143 --TGTATTATGTAAGTTATGTAAGTTATGTAGG
1 TATGTATTATGTAAGTTATGTAAGTTATGTAGG
*
76692174 CTATGTATTATCTAAGTT
1 -TATGTATTATGTAAGTT
76692192 TTTATGTTAT
Statistics
Matches: 91, Mismatches: 15, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
28 1 0.01
29 17 0.19
30 4 0.04
31 2 0.02
32 2 0.02
33 5 0.05
34 58 0.64
35 2 0.02
ACGTcount: A:0.29, C:0.03, G:0.22, T:0.45
Consensus pattern (33 bp):
TATGTATTATGTAAGTTATGTAAGTTATGTAGG
Found at i:76692737 original size:2 final size:2
Alignment explanation
Indices: 76692732--76692758 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
76692722 CAAAAAAAAA
76692732 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
76692759 AGTAAATTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:76696007 original size:7 final size:7
Alignment explanation
Indices: 76695997--76696084 Score: 50
Period size: 7 Copynumber: 11.9 Consensus size: 7
76695987 AACCCTAAAT
76695997 CCCTAAC
1 CCCTAAC
76696004 CCCTAAC
1 CCCTAAC
76696011 CCCTAAATC
1 CCCT-AA-C
* *
76696020 TCCTAGC
1 CCCTAAC
*
76696027 CCCTAAAT
1 CCCT-AAC
**
76696035 TTCTAAC
1 CCCTAAC
*
76696042 CCTTAAC
1 CCCTAAC
*
76696049 TCCTAACC
1 CCCTAA-C
*
76696057 CCCTAAAT
1 CCCT-AAC
76696065 CCCTAAC
1 CCCTAAC
76696072 CCCTAAC
1 CCCTAAC
*
76696079 TCCTAA
1 CCCTAA
76696085 ACCTTATATT
Statistics
Matches: 59, Mismatches: 17, Indels: 10
0.69 0.20 0.12
Matches are distributed among these distances:
7 39 0.66
8 14 0.24
9 6 0.10
ACGTcount: A:0.30, C:0.45, G:0.01, T:0.24
Consensus pattern (7 bp):
CCCTAAC
Found at i:76696029 original size:16 final size:16
Alignment explanation
Indices: 76696005--76696077 Score: 82
Period size: 16 Copynumber: 4.8 Consensus size: 16
76695995 ATCCCTAACC
76696005 CCTAACCCCTAAATCT
1 CCTAACCCCTAAATCT
*
76696021 CCTAGCCCCTAAAT-T
1 CCTAACCCCTAAATCT
* *
76696036 TCTAA-CCCTTAA-CT
1 CCTAACCCCTAAATCT
76696050 CCTAACCCCCTAAATC-
1 CCTAA-CCCCTAAATCT
76696066 CCTAACCCCTAA
1 CCTAACCCCTAA
76696078 CTCCTAAACC
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
14 11 0.23
15 11 0.23
16 24 0.51
17 1 0.02
ACGTcount: A:0.30, C:0.44, G:0.01, T:0.25
Consensus pattern (16 bp):
CCTAACCCCTAAATCT
Found at i:76696029 original size:23 final size:22
Alignment explanation
Indices: 76695989--76696085 Score: 90
Period size: 22 Copynumber: 4.3 Consensus size: 22
76695979 ACACCATAAA
76695989 CCCTAAATCCCTAACCCCTAAC
1 CCCTAAATCCCTAACCCCTAAC
* *
76696011 CCCTAAATCTCCTAGCCCCTAAAT
1 CCCTAAATC-CCTAACCCCT-AAC
** *
76696035 TTCT-AA-CCCTTAACTCCTAACC
1 CCCTAAATCCC-TAACCCCTAA-C
76696057 CCCTAAATCCCTAACCCCTAAC
1 CCCTAAATCCCTAACCCCTAAC
*
76696079 TCCTAAA
1 CCCTAAA
76696086 CCTTATATTC
Statistics
Matches: 58, Mismatches: 11, Indels: 12
0.72 0.14 0.15
Matches are distributed among these distances:
21 4 0.07
22 25 0.43
23 22 0.38
24 7 0.12
ACGTcount: A:0.31, C:0.44, G:0.01, T:0.24
Consensus pattern (22 bp):
CCCTAAATCCCTAACCCCTAAC
Found at i:76696060 original size:30 final size:30
Alignment explanation
Indices: 76696004--76696084 Score: 101
Period size: 30 Copynumber: 2.7 Consensus size: 30
76695994 AATCCCTAAC
*
76696004 CCCTAACCCCTAAATCTCCT-AGCCCCTAAAT
1 CCCTAACCCCT-AA-CTCCTAACCCCCTAAAT
** *
76696035 TTCTAACCCTTAACTCCTAACCCCCTAAAT
1 CCCTAACCCCTAACTCCTAACCCCCTAAAT
76696065 CCCTAACCCCTAACTCCTAA
1 CCCTAACCCCTAACTCCTAA
76696085 ACCTTATATT
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 5 0.12
30 29 0.69
31 8 0.19
ACGTcount: A:0.30, C:0.44, G:0.01, T:0.25
Consensus pattern (30 bp):
CCCTAACCCCTAACTCCTAACCCCCTAAAT
Found at i:76696102 original size:45 final size:46
Alignment explanation
Indices: 76695985--76696102 Score: 109
Period size: 45 Copynumber: 2.6 Consensus size: 46
76695975 ATTGACACCA
* * * *
76695985 TAAAC-CCTAAATCCCTAACCCCTAA-CCCCTAAATCTCCTAGCCCC
1 TAAACTCCTAAA-CCTTAACTCCAAACCCCCTAAATCTCCTAACCCC
* * * *
76696030 TAAATTTCTAACCCTTAACTCCTAACCCCCTAAATC-CCTAACCCC
1 TAAACTCCTAAACCTTAACTCCAAACCCCCTAAATCTCCTAACCCC
*
76696075 T-AACTCCTAAACCTTATATTCCAAACCC
1 TAAACTCCTAAACCTTA-ACTCCAAACCC
76696103 TAATAATCAT
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
44 12 0.20
45 33 0.56
46 14 0.24
ACGTcount: A:0.32, C:0.42, G:0.01, T:0.25
Consensus pattern (46 bp):
TAAACTCCTAAACCTTAACTCCAAACCCCCTAAATCTCCTAACCCC
Found at i:76697155 original size:41 final size:42
Alignment explanation
Indices: 76697064--76697158 Score: 115
Period size: 41 Copynumber: 2.3 Consensus size: 42
76697054 GCGCTTCAAC
76697064 AAAAACGCCGCT-AAAACCCTAACATTAGCAGCGCTTATCAT
1 AAAAACGCCGCTAAAAACCCTAACATTAGCAGCGCTTATCAT
* * * * *
76697105 AGAATCGCCGCTAAAAATCTTAACTTTAGC-GTCGCTTAT-AT
1 AAAAACGCCGCTAAAAACCCTAACATTAGCAG-CGCTTATCAT
76697146 AAAAACGCCGCTA
1 AAAAACGCCGCTA
76697159 GAAGACCAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
41 24 0.53
42 21 0.47
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.23
Consensus pattern (42 bp):
AAAAACGCCGCTAAAAACCCTAACATTAGCAGCGCTTATCAT
Found at i:76697571 original size:43 final size:43
Alignment explanation
Indices: 76697510--76697625 Score: 178
Period size: 43 Copynumber: 2.7 Consensus size: 43
76697500 TGGTGTAGTG
* **
76697510 AGACCATGACCTTTAGCGGCGCTTTTCCCACAAATGCCGCTAT
1 AGACCACGACCTTTAGCGGCGCTTTTCCCACAAACACCGCTAT
*
76697553 AGACCACGACCTTTAGCGGCGCTTTTCCAACAAACACCGCTAT
1 AGACCACGACCTTTAGCGGCGCTTTTCCCACAAACACCGCTAT
**
76697596 AGACCACGACCTTTAGCAACGCTTTTCCCA
1 AGACCACGACCTTTAGCGGCGCTTTTCCCA
76697626 TAAGATGGAT
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 66 1.00
ACGTcount: A:0.26, C:0.34, G:0.16, T:0.23
Consensus pattern (43 bp):
AGACCACGACCTTTAGCGGCGCTTTTCCCACAAACACCGCTAT
Found at i:76707330 original size:3 final size:3
Alignment explanation
Indices: 76707322--76707360 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
76707312 TTTATTACTG
76707322 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
76707361 ACGTATATTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:76707894 original size:17 final size:16
Alignment explanation
Indices: 76707874--76707910 Score: 58
Period size: 15 Copynumber: 2.3 Consensus size: 16
76707864 TTATTCCATT
76707874 TCATCTTTTTATATGTA
1 TCAT-TTTTTATATGTA
76707891 TCA-TTTTTATATGTA
1 TCATTTTTTATATGTA
76707906 TCATT
1 TCATT
76707911 GTATATGTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 15 0.79
16 1 0.05
17 3 0.16
ACGTcount: A:0.24, C:0.11, G:0.05, T:0.59
Consensus pattern (16 bp):
TCATTTTTTATATGTA
Found at i:76707899 original size:15 final size:15
Alignment explanation
Indices: 76707879--76707910 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
76707869 CCATTTCATC
76707879 TTTTTATATGTATCA
1 TTTTTATATGTATCA
76707894 TTTTTATATGTATCA
1 TTTTTATATGTATCA
76707909 TT
1 TT
76707911 GTATATGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.06, G:0.06, T:0.62
Consensus pattern (15 bp):
TTTTTATATGTATCA
Found at i:76707915 original size:14 final size:15
Alignment explanation
Indices: 76707883--76707918 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
76707873 TTCATCTTTT
*
76707883 TATATGTATCATTTT
1 TATATGTATCATTTG
76707898 TATATGTATCA-TTG
1 TATATGTATCATTTG
76707912 TATATGT
1 TATATGT
76707919 GGGTTAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 9 0.45
15 11 0.55
ACGTcount: A:0.28, C:0.06, G:0.11, T:0.56
Consensus pattern (15 bp):
TATATGTATCATTTG
Found at i:76710782 original size:3 final size:3
Alignment explanation
Indices: 76710776--76710802 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
76710766 ATAGTAGTAG
76710776 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
76710803 ATGGGGACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:76712062 original size:45 final size:45
Alignment explanation
Indices: 76711927--76712121 Score: 223
Period size: 44 Copynumber: 4.4 Consensus size: 45
76711917 AAGACTTGTA
* *
76711927 TCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCTG
1 TCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCTT
* * ***
76711972 TCTTTGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCTT
* * *
76712016 TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGACCTACTT
1 TCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCTT
* *** * *
76712061 TCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGGTCTGCTA
1 TCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCTT
*
76712105 TCTTCGATCTATTTCAC
1 TCTTCGATCTACTTCAC
76712122 TGCCGACCAG
Statistics
Matches: 123, Mismatches: 25, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
44 72 0.59
45 51 0.41
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (45 bp):
TCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCTT
Found at i:76712078 original size:89 final size:89
Alignment explanation
Indices: 76711925--76712121 Score: 313
Period size: 89 Copynumber: 2.2 Consensus size: 89
76711915 ATAAGACTTG
* * * *
76711925 TATCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCTGTCTTTGATCTACTTCACG
1 TATCTTCGATCTACTTCACCACCAATATGGGAAGACAAGACCTACTGTCTTCGATCTACTTCACG
76711990 CCAATACATGAAGACAAGATCTGC
66 CCAATACATGAAGACAAGATCTGC
* * *
76712014 TTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGACCTACTTTCTTCGATCTACTTCACG
1 TATCTTCGATCTACTTCACCACCAATATGGGAAGACAAGACCTACTGTCTTCGATCTACTTCACG
*
76712079 CCAATACATGAAGACAAGGTCTGC
66 CCAATACATGAAGACAAGATCTGC
*
76712103 TATCTTCGATCTATTTCAC
1 TATCTTCGATCTACTTCAC
76712122 TGCCGACCAG
Statistics
Matches: 98, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
89 98 1.00
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (89 bp):
TATCTTCGATCTACTTCACCACCAATATGGGAAGACAAGACCTACTGTCTTCGATCTACTTCACG
CCAATACATGAAGACAAGATCTGC
Found at i:76712303 original size:132 final size:130
Alignment explanation
Indices: 76712104--76712757 Score: 948
Period size: 132 Copynumber: 5.0 Consensus size: 130
76712094 AAGGTCTGCT
* * * * * * *
76712104 ATCTTCGATCTATTTCACTGCCGACCAGGGAGATAGAATTACTGGCTTCAATATAGTCCACTATA
1 ATCTTCAATCTATTCCACTGCTGCCCA-GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTA
* *
76712169 ACCTCAGGGAGGTAAAATCTGTCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTG
65 ACCTCAGGGAGGTAAAATCTGTCATCTT-GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
76712234 TA
129 TA
* *
76712236 ATCTTCAATCTATTCCACTGCTGCCCAGGAAGATAGAATTGCTGGCTTCAGTGTACTCCACTGTA
1 ATCTTCAATCTATTCCACTGCTGCCCAGG-AGATAGAATTACTGGCTTCAATGTACTCCACTGTA
* *
76712301 ACCTCAGGGAGGTAAAATTTGCCATCCTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
65 ACCTCAGGGAGGTAAAATCTGTCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
76712366 TA
129 TA
* *
76712368 ATCTTCAATCTATTCCACTGCTGCCCAGTGAGATAGAATTACTGGCTTTAATGTACTCTACTGTA
1 ATCTTCAATCTATTCCACTGCTGCCCAG-GAGATAGAATTACTGGCTTCAATGTACTCCACTGTA
* *
76712433 ACCTCATGGAGGTAAAATCCGTCATCCTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
65 ACCTCAGGGAGGTAAAATCTGTCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
76712498 TA
129 TA
* * *
76712500 ATCTTCAATCTATTCCACTGTTGCTCATGGAGATAGAATTACTGGCTTCAATGTACTCCACAGTA
1 ATCTTCAATCTATTCCACTGCTGCCCA-GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTA
* *
76712565 ACCTCAGGGAGGTAAAATCTGTCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTG
65 ACCTCAGGGAGGTAAAATCTGTCATCTT-GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
76712630 TA
129 TA
* * * *
76712632 ATCTTCAATCTATTCCTCTGCTGCCTAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTATA
1 ATCTTCAATCTATTCCACTGCTGCCCA-GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTA
* ***
76712697 ACCTCAGAGAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGA
65 ACCTCAGGGAGGTAAAATCTGTCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGA
76712758 CTTGTGGTTT
Statistics
Matches: 472, Mismatches: 44, Indels: 12
0.89 0.08 0.02
Matches are distributed among these distances:
131 5 0.01
132 460 0.97
133 7 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (130 bp):
ATCTTCAATCTATTCCACTGCTGCCCAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
CCTCAGGGAGGTAAAATCTGTCATCTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTA
Found at i:76712862 original size:396 final size:399
Alignment explanation
Indices: 76712016--76712901 Score: 1013
Period size: 396 Copynumber: 2.2 Consensus size: 399
76712006 AGATCTGCTT
* * * * *
76712016 TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGACCTACTTTCTTCGATCTACTTCACGCC
1 TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGATCTACTTCACACC
* * * *
76712081 AATACATGAAGACAAGGTCTGCTATCTTCGATCTATTTCACTGCCGACCAGGGAGATAGAATTAC
66 AATACAGGAAGACAAGATCTGCTATCTTCAATCTATTCCACTGCCGACCAGGGAGATAGAATTAC
*
76712146 TGGCTTCAATATAGTCCACTATAACCTCAGGGAGGTAAAATCTGTCATCTTCGATCTACTCCACT
131 TGGCTTCAATATACTCCACTATAACCTCAGGGAGGTAAAATCTGTCATCTTCGATCTACTCCACT
76712211 ACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGAAGATAGAATT
196 ACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGAAGATAGAATT
* * * * ***
76712276 GCTGGCTTCAGTGTACTCCACTGTAACCTCAGGGAGGTAAAATTTGCCATCCTTGATCTGCTCCA
261 ACTGGCTTCAATGTACTCCACTATAACCTCAGAGAGGTAAAATCCACCATCCTTGATCTGCTCCA
* * *
76712341 CTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGTGAGATAGAA
326 CTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCCATTCCACTGCTACCCAGGGAGATAGAA
*
76712406 TTACTGGCTT
391 -TACTGGCTA
** * * * *
76712416 TAAT-GTACTCTACTGT-A--ACC--TCAT-GGAGGTA-AA-ATCCG-TCATCCTTGATCTGC-T
1 TCTTCG-A-TCTACT-TCACCACCAGT-ATGGGAAG-ACAAGATCTGCTC-TCTTTGATCTACTT
* * * * * ** *
76712470 C-CACTACTGCTTAGGGAGATAAGATCTG-TAATCTTCAATCTATTCCACTGTTG-CTCATGGAG
60 CACACCAATAC--AGGAAGACAAGATCTGCT-ATCTTCAATCTATTCCACTGCCGAC-CAGGGAG
*
76712532 ATAGAATTACTGGCTTCAATGTACTCCAC-AGTAACCTCAGGGAGGTAAAATCTGTCATCTTCGA
121 ATAGAATTACTGGCTTCAATATACTCCACTA-TAACCTCAGGGAGGTAAAATCTGTCATCTTCGA
* *
76712596 TCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCTCTGCTGCCTAGG
185 TCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGG
* * *
76712661 GAGATAGAATTATTGGCTTCAATGTACTCCACTATAACCTCAGAGAGGTAAAATCCACCATCTTT
250 AAGATAGAATTACTGGCTTCAATGTACTCCACTATAACCTCAGAGAGGTAAAATCCACCATCCTT
** * * *
76712726 GATCTGCTCCACTACTGCTTAGGGAGATAAGA-CTTGTGGT-TTTAATCCATTTCATTG-TAACT
315 GATCTGCTCCACTACTGCTTAGGGAGATAAGATC-TGTAATCTTCAATCCATTCCACTGCT-AC-
* *
76712788 TCAGGGAGATA-AA-ACTTG-TA
377 CCAGGGAGATAGAATACTGGCTA
76712808 TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGATCTACTTCACACC
1 TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGATCTACTTCACACC
* * * * *
76712873 AGTACATGAAGATAAGATCTACTTTCTTC
66 AATACAGGAAGACAAGATCTGCTATCTTC
76712902 GATGCACTTC
Statistics
Matches: 398, Mismatches: 61, Indels: 58
0.77 0.12 0.11
Matches are distributed among these distances:
390 1 0.00
391 7 0.02
392 4 0.01
393 8 0.02
394 9 0.02
395 30 0.08
396 303 0.76
397 12 0.03
398 9 0.02
399 4 0.01
400 3 0.01
401 7 0.02
402 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (399 bp):
TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGATCTACTTCACACC
AATACAGGAAGACAAGATCTGCTATCTTCAATCTATTCCACTGCCGACCAGGGAGATAGAATTAC
TGGCTTCAATATACTCCACTATAACCTCAGGGAGGTAAAATCTGTCATCTTCGATCTACTCCACT
ACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGAAGATAGAATT
ACTGGCTTCAATGTACTCCACTATAACCTCAGAGAGGTAAAATCCACCATCCTTGATCTGCTCCA
CTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCCATTCCACTGCTACCCAGGGAGATAGAA
TACTGGCTA
Found at i:76712888 original size:264 final size:261
Alignment explanation
Indices: 76712017--76712892 Score: 758
Period size: 264 Copynumber: 3.3 Consensus size: 261
76712007 GATCTGCTTT
* * * *
76712017 CTTCGATCTACTTCACCACCAGT-ATGGGAAG-ACAAGACCTACT-TTCTTCGATCTACTTCACG
1 CTTCGATCTACTTCACCACCAGTAATGGGAAGTA-AA-ATCTGCTCATCTTCGATCTACTTCACA
* * * * * * *
76712079 CCAATACATGAAGACAAGGTCTGCT-ATCTTCGATCTATTTCACTGCCGACCAGGGAGATAGAAT
64 CCAGTACAGGAAGATAAGATCTG-TAATCTTCAATCTATTCCACTGCTG-CCAGGGAGATAGAAT
* * * * *
76712143 TACTGGCTTCAATATAGTCCACTATAACCTCAGGGAGGTAAAATCTGTCATCTTCGATCTACTCC
127 TACTGGCTTCAATGTACTCCACTATAACCTCA-GGAGGTAAAATCCGTCATCTTTGATCTGCTCC
* * *
76712208 ACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGAAGATAGA
191 ACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTG-TGCTCAGGGAGATAGA
76712273 ATTGCTGG
255 ATTG-TGG
* * * * * *
76712281 CTTC-AGTGTAC-T--CCA-CTGTAACCTCAGGGAGGTAAAATTTGC-CATCCTT-GATCTGCTC
1 CTTCGA-TCTACTTCACCACCAGTAA--T--GGGAAGTAAAATCTGCTCAT-CTTCGATCTACTT
* * * *
76712339 CACTA-CTGCT-TAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGTGAGAT
60 CAC-ACCAG-TACAGGAAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG-CCAGGGAGAT
* * * *
76712402 AGAATTACTGGCTTTAATGTACTCTACTGTAACCTCATGGAGGTAAAATCCGTCATCCTTGATCT
122 AGAATTACTGGCTTCAATGTACTCCACTATAACCTCA-GGAGGTAAAATCCGTCATCTTTGATCT
*
76712467 GCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGCTCATGGAG
186 GCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTG-TGCTCAGGGAG
*
76712532 ATAGAATTACTGG
250 ATAGAATT-GTGG
* * *
76712545 CTTCAATGTAC-T--CCA-CAGTAACCTCAGGGAGGTAAAATCTG-TCATCTTCGATCTAC-TC-
1 CTTCGATCTACTTCACCACCAGTAA--T--GGGAAGTAAAATCTGCTCATCTTCGATCTACTTCA
* * * * *
76712603 CACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCTCTGCTGCCTAGGGAGATAG
62 CACCAGT-AC-AGGAAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCC-AGGGAGATAG
* **
76712668 AATTATTGGCTTCAATGTACTCCACTATAACCTCAGAGAGGTAAAATCCACCATCTTTGATCTGC
124 AATTACTGGCTTCAATGTACTCCACTATAACCTCAG-GAGGTAAAATCCGTCATCTTTGATCTGC
** * * * * *
76712733 TCCACTACTGCTTAGGGAGATAAGA-CTTGTGGT-TTTAATCCATTTCATTGTAACTTCAGGGAG
188 TCCACTACTGCTTAGGGAGATAAGATC-TGTAATCTTCAATCTATTCCACTGT-GC-TCAGGGAG
* **
76712796 ATAAAACTTGTAT
250 ATAGAA-TTGTGG
*
76712809 CTTCGATCTACTTCACCACCAGT-ATGGGAAG-ACAAGATCTGCTC-TCTTTGATCTACTTCACA
1 CTTCGATCTACTTCACCACCAGTAATGGGAAGTA-AA-ATCTGCTCATCTTCGATCTACTTCACA
*
76712871 CCAGTACATGAAGATAAGATCT
64 CCAGTACAGGAAGATAAGATCT
76712893 ACTTTCTTCG
Statistics
Matches: 501, Mismatches: 76, Indels: 70
0.77 0.12 0.11
Matches are distributed among these distances:
260 3 0.01
261 6 0.01
262 3 0.01
263 33 0.07
264 421 0.84
265 21 0.04
266 6 0.01
267 4 0.01
268 4 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (261 bp):
CTTCGATCTACTTCACCACCAGTAATGGGAAGTAAAATCTGCTCATCTTCGATCTACTTCACACC
AGTACAGGAAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCAGGGAGATAGAATTACT
GGCTTCAATGTACTCCACTATAACCTCAGGAGGTAAAATCCGTCATCTTTGATCTGCTCCACTAC
TGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTGCTCAGGGAGATAGAATTGTG
G
Found at i:76712929 original size:45 final size:44
Alignment explanation
Indices: 76712808--76713202 Score: 312
Period size: 44 Copynumber: 8.9 Consensus size: 44
76712798 AAAACTTGTA
* *
76712808 TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCTC
1 TCTTCGATCTACTTC-CCACCAGTATGGGAAGACAAGATCTACTT
* * *** *
76712853 TCTTTGATCTACTTCACACCAGTACATGAAGATAAGATCTACTT
1 TCTTCGATCTACTTCCCACCAGTATGGGAAGACAAGATCTACTT
*
76712897 TCTTCGATGC-ACTTCGCCACCAGTATGGGAAGACAAGATCT-GTT
1 TCTTCGAT-CTACTTC-CCACCAGTATGGGAAGACAAGATCTACTT
* * ***
76712941 CTCTTTGATCTACTTCACACCAGTACATGAAGACAAGATCTACTT
1 -TCTTCGATCTACTTCCCACCAGTATGGGAAGACAAGATCTACTT
** * * *
76712986 TCTTCGATCTGTTTCGCCACCAGTATGGGAAGGCAATATCT-GTT
1 TCTTCGATCTACTTC-CCACCAGTATGGGAAGACAAGATCTACTT
* * * *** *
76713030 ATCTTTGATCTACTTCACGCCAGTACATGATGACAAGATCTACTT
1 -TCTTCGATCTACTTCCCACCAGTATGGGAAGACAAGATCTACTT
* * * *
76713075 TCTTCGATCTGCTTTGCCACCAGTATGGGAAGGCAAGATCT-GTT
1 TCTTCGATCTAC-TTCCCACCAGTATGGGAAGACAAGATCTACTT
* * * *** **
76713119 ATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTT
1 -TCTTCGATCTACTTCCCACCAGTATGGGAAGACAAGATCTACTT
* * *
76713164 TTTTCAATCTACTTCGCCACCAGTATGAGAAGACAAGAT
1 TCTTCGATCTACTTC-CCACCAGTATGGGAAGACAAGAT
76713203 ATGGTATCTT
Statistics
Matches: 266, Mismatches: 72, Indels: 24
0.73 0.20 0.07
Matches are distributed among these distances:
44 134 0.50
45 132 0.50
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (44 bp):
TCTTCGATCTACTTCCCACCAGTATGGGAAGACAAGATCTACTT
Found at i:76712959 original size:89 final size:89
Alignment explanation
Indices: 76712808--76713251 Score: 656
Period size: 89 Copynumber: 5.0 Consensus size: 89
76712798 AAAACTTGTA
* * * *
76712808 TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGATCTACTTCACACC
1 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCACGCC
*
76712873 AGTACATGAAGATAAGATCTACTT
66 AGTACATGAAGACAAGATCTACTT
* *
76712897 TCTTCGATGC-ACTTCGCCACCAGTATGGGAAGACAAGATCTGTTCTCTTTGATCTACTTCACAC
1 TCTTCGAT-CTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCACGC
76712961 CAGTACATGAAGACAAGATCTACTT
65 CAGTACATGAAGACAAGATCTACTT
** * *
76712986 TCTTCGATCTGTTTCGCCACCAGTATGGGAAGGCAATATCTGTTATCTTTGATCTACTTCACGCC
1 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCACGCC
*
76713051 AGTACATGATGACAAGATCTACTT
66 AGTACATGAAGACAAGATCTACTT
* * *
76713075 TCTTCGATCTGCTTTGCCACCAGTATGGGAAGGCAAGATCTGTTATCTTTGATCTACTTCACGCC
1 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCACGCC
**
76713140 AGTACATGAAGACAAGATCTGTTT
66 AGTACATGAAGACAAGATCTACTT
* * * * * * *
76713164 TTTTCAATCTACTTCGCCACCAGTATGAGAAGACAAGATATGGTATCTTTAATCTACTTCATGCC
1 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCACGCC
76713229 AGTACATGAAGACAAGATCTACT
66 AGTACATGAAGACAAGATCTACT
76713252 GCTACTCCAC
Statistics
Matches: 325, Mismatches: 28, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
88 1 0.00
89 323 0.99
90 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (89 bp):
TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCACGCC
AGTACATGAAGACAAGATCTACTT
Found at i:76713405 original size:44 final size:45
Alignment explanation
Indices: 76713357--76713524 Score: 107
Period size: 44 Copynumber: 3.8 Consensus size: 45
76713347 TACTACTGCT
*
76713357 TAGGGAGATAAGATCTGTAAT-CTTCAATCTATTCCACTGCTACC
1 TAGGGAGATAAGATCTGTAATGCTTCAATCTACTCCACTGCTACC
* *
76713401 TAGGGAGAT-AGA-CT-TACTGGCTTCAATGTACTCCACTG-TAACC
1 TAGGGAGATAAGATCTGTAAT-GCTTCAATCTACTCCACTGCT-ACC
* * ** * * * * * ***
76713444 TCAGGGAGGTAAAATCTGCCATCCTT-GATTTGCTCCACTACTTTT
1 T-AGGGAGATAAGATCTGTAATGCTTCAATCTACTCCACTGCTACC
* *
76713489 TAGGGAGATAAGATCTGTAAT-ATTCAATCTATTCCA
1 TAGGGAGATAAGATCTGTAATGCTTCAATCTACTCCA
76713525 ATGTTGCCCA
Statistics
Matches: 90, Mismatches: 25, Indels: 18
0.68 0.19 0.14
Matches are distributed among these distances:
41 3 0.03
42 3 0.03
43 25 0.28
44 39 0.43
45 13 0.14
46 6 0.07
47 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (45 bp):
TAGGGAGATAAGATCTGTAATGCTTCAATCTACTCCACTGCTACC
Found at i:76713418 original size:132 final size:131
Alignment explanation
Indices: 76713269--76713598 Score: 455
Period size: 132 Copynumber: 2.5 Consensus size: 131
76713259 CACTGTTGCT
* *
76713269 CAGGGAGATAGAATTACTAGCTTCAATGTACTTCATTGTAACCTCAAGGAGGTAAAATCCGCCAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTTCATTGTAACCTCAGGGAGGTAAAATCCGCCAT
* * *
76713334 CTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTA
66 CTT-GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCAATGCTA
76713399 CC
130 CC
* * * * *
76713401 TAGGGAGATAGACTTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTTCATTGTAACCTCAGGGAGGTAAAATCCGCCAT
* ** * *
76713466 CCTTGATTTGCTCCACTACTTTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCAATGTTG
66 -CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCAATGCTA
76713531 CC
130 CC
* * * *
76713533 CATGGAGATAGAATTACTGGCTTCAATATAC-TCCTCTATAACCTCAGGGAGGTAAAATCCGCCA
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTTCAT-TGTAACCTCAGGGAGGTAAAATCCGCCA
76713597 TC
65 TC
76713599 AACTTGCTCC
Statistics
Matches: 172, Mismatches: 24, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
131 2 0.01
132 167 0.97
133 3 0.02
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (131 bp):
CAGGGAGATAGAATTACTGGCTTCAATGTACTTCATTGTAACCTCAGGGAGGTAAAATCCGCCAT
CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCAATGCTAC
C
Found at i:76715794 original size:20 final size:20
Alignment explanation
Indices: 76715769--76715809 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
76715759 AATTTGGCAG
76715769 AAAAAATC-TGAAAGAATGAA
1 AAAAAATCGT-AAAGAATGAA
76715789 AAAAAATCGTAAAGAATGAA
1 AAAAAATCGTAAAGAATGAA
76715809 A
1 A
76715810 GAACATTTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 19 0.95
21 1 0.05
ACGTcount: A:0.66, C:0.05, G:0.15, T:0.15
Consensus pattern (20 bp):
AAAAAATCGTAAAGAATGAA
Found at i:76717817 original size:19 final size:20
Alignment explanation
Indices: 76717793--76717832 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
76717783 AACCGTGTTT
* *
76717793 AATGCATATG-ATGCAATGA
1 AATGCAAATGCATGAAATGA
76717812 AATGCAAATGCATGAAATGA
1 AATGCAAATGCATGAAATGA
76717832 A
1 A
76717833 TGCGAAAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.47, C:0.10, G:0.20, T:0.23
Consensus pattern (20 bp):
AATGCAAATGCATGAAATGA
Found at i:76718306 original size:17 final size:17
Alignment explanation
Indices: 76718280--76718315 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
76718270 TTCTATGATG
*
76718280 AAATGCCATGCAGTCAA
1 AAATGCCATGCAGCCAA
*
76718297 AAATGTCATGCAGCCAA
1 AAATGCCATGCAGCCAA
76718314 AA
1 AA
76718316 CAAAATACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.44, C:0.22, G:0.17, T:0.17
Consensus pattern (17 bp):
AAATGCCATGCAGCCAA
Found at i:76720264 original size:3 final size:3
Alignment explanation
Indices: 76720258--76720302 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
76720248 ATAGTAGTAG
76720258 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
76720303 ATGGGGACTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:76721089 original size:3 final size:3
Alignment explanation
Indices: 76721083--76721127 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
76721073 ATAGTAGTAG
76721083 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
76721128 ATGGGGACTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:76721693 original size:825 final size:825
Alignment explanation
Indices: 76720104--76721754 Score: 3302
Period size: 825 Copynumber: 2.0 Consensus size: 825
76720094 TATATACATA
76720104 TTTACAAAAGTAAAAAAAATTGAAATTAAAATATAAAAGTATATATATAATGTTTGTATGTACAA
1 TTTACAAAAGTAAAAAAAATTGAAATTAAAATATAAAAGTATATATATAATGTTTGTATGTACAA
76720169 AAATATATGTATGTATTTATAAAAGTTTTTTAAAAAATGTATGTATATGTATTACTTTAAAAAAC
66 AAATATATGTATGTATTTATAAAAGTTTTTTAAAAAATGTATGTATATGTATTACTTTAAAAAAC
76720234 ATGCGTATGTATATATAGTAGTAGTAATAATAATAATAATAATAATAATAATAATAATAATAATA
131 ATGCGTATGTATATATAGTAGTAGTAATAATAATAATAATAATAATAATAATAATAATAATAATA
76720299 ATAAATGGGGACTAAATCAAAATTAAACAGAATTTTAAGGTCAAACTTAAAAAACAAAAACAAAA
196 ATAAATGGGGACTAAATCAAAATTAAACAGAATTTTAAGGTCAAACTTAAAAAACAAAAACAAAA
76720364 AAAAAGCTAAATCATATTTCGCATGAAAGGGGAAGGACCAAAGAAAGAGATATCCTCGCGCTGGC
261 AAAAAGCTAAATCATATTTCGCATGAAAGGGGAAGGACCAAAGAAAGAGATATCCTCGCGCTGGC
76720429 AAAACGGCGCCGTTCCAGTGGGCGCATGCACATGGTTTCTGGACCATATTGAAACGTGAAAGAAA
326 AAAACGGCGCCGTTCCAGTGGGCGCATGCACATGGTTTCTGGACCATATTGAAACGTGAAAGAAA
76720494 TTTCGTGGCTAAATTGTAAATGCGTAAAGTACTGCATTTAAATCAAGAACAAAAACGGGGGACCA
391 TTTCGTGGCTAAATTGTAAATGCGTAAAGTACTGCATTTAAATCAAGAACAAAAACGGGGGACCA
76720559 AAAGCGAAAATTTCCCATTCAGGGCCAGAACGCGCGGATCCTCCCCCTCGGGTCGGGTCACCGCG
456 AAAGCGAAAATTTCCCATTCAGGGCCAGAACGCGCGGATCCTCCCCCTCGGGTCGGGTCACCGCG
76720624 TGGGTCTGGCCACTTTAAACGGCGCCATTTTACCTTTTGTTTTAAATTAAATTAAAAAAACAGAG
521 TGGGTCTGGCCACTTTAAACGGCGCCATTTTACCTTTTGTTTTAAATTAAATTAAAAAAACAGAG
76720689 AAAGAATTAGGGAAAAATCTATTTTCCCTTTTCCCTGAAGCAGACTGCTTCTTTAGGGTTTTATC
586 AAAGAATTAGGGAAAAATCTATTTTCCCTTTTCCCTGAAGCAGACTGCTTCTTTAGGGTTTTATC
76720754 AACCCTTCAGCGTCGCTGTTTTCAAGAACCCCCACGACCTCAATCGCCGTCCTAGCCTCCGATCG
651 AACCCTTCAGCGTCGCTGTTTTCAAGAACCCCCACGACCTCAATCGCCGTCCTAGCCTCCGATCG
76720819 TGACGGAGAATGGAGCAGAACGCGATAAGACTGGGTAAGTCTTCCTTCTCCCCTTTTATTCCCGT
716 TGACGGAGAATGGAGCAGAACGCGATAAGACTGGGTAAGTCTTCCTTCTCCCCTTTTATTCCCGT
76720884 TAAGAAATAAAATAAGGAAAAAAATAAAAAAACTAGATTCACCTT
781 TAAGAAATAAAATAAGGAAAAAAATAAAAAAACTAGATTCACCTT
76720929 TTTACAAAAGTAAAAAAAATTGAAATTAAAATATAAAAGTATATATATAATGTTTGTATGTACAA
1 TTTACAAAAGTAAAAAAAATTGAAATTAAAATATAAAAGTATATATATAATGTTTGTATGTACAA
76720994 AAATATATGTATGTATTTATAAAAGTTTTTTAAAAAATGTATGTATATGTATTACTTTAAAAAAC
66 AAATATATGTATGTATTTATAAAAGTTTTTTAAAAAATGTATGTATATGTATTACTTTAAAAAAC
76721059 ATGCGTATGTATATATAGTAGTAGTAATAATAATAATAATAATAATAATAATAATAATAATAATA
131 ATGCGTATGTATATATAGTAGTAGTAATAATAATAATAATAATAATAATAATAATAATAATAATA
76721124 ATAAATGGGGACTAAATCAAAATTAAACAGAATTTTAAGGTCAAACTTAAAAAACAAAAACAAAA
196 ATAAATGGGGACTAAATCAAAATTAAACAGAATTTTAAGGTCAAACTTAAAAAACAAAAACAAAA
76721189 AAAAAGCTAAATCATATTTCGCATGAAAGGGGAAGGACCAAAGAAAGAGATATCCTCGCGCTGGC
261 AAAAAGCTAAATCATATTTCGCATGAAAGGGGAAGGACCAAAGAAAGAGATATCCTCGCGCTGGC
76721254 AAAACGGCGCCGTTCCAGTGGGCGCATGCACATGGTTTCTGGACCATATTGAAACGTGAAAGAAA
326 AAAACGGCGCCGTTCCAGTGGGCGCATGCACATGGTTTCTGGACCATATTGAAACGTGAAAGAAA
76721319 TTTCGTGGCTAAATTGTAAATGCGTAAAGTACTGCATTTAAATCAAGAACAAAAACGGGGGACCA
391 TTTCGTGGCTAAATTGTAAATGCGTAAAGTACTGCATTTAAATCAAGAACAAAAACGGGGGACCA
76721384 AAAGCGAAAATTTCCCATTCAGGGCCAGAACGCGCGGATCCTCCCCCTCGGGTCGGGTCACCGCG
456 AAAGCGAAAATTTCCCATTCAGGGCCAGAACGCGCGGATCCTCCCCCTCGGGTCGGGTCACCGCG
76721449 TGGGTCTGGCCACTTTAAACGGCGCCATTTTACCTTTTGTTTTAAATTAAATTAAAAAAACAGAG
521 TGGGTCTGGCCACTTTAAACGGCGCCATTTTACCTTTTGTTTTAAATTAAATTAAAAAAACAGAG
76721514 AAAGAATTAGGGAAAAATCTATTTTCCCTTTTCCCTGAAGCAGACTGCTTCTTTAGGGTTTTATC
586 AAAGAATTAGGGAAAAATCTATTTTCCCTTTTCCCTGAAGCAGACTGCTTCTTTAGGGTTTTATC
76721579 AACCCTTCAGCGTCGCTGTTTTCAAGAACCCCCACGACCTCAATCGCCGTCCTAGCCTCCGATCG
651 AACCCTTCAGCGTCGCTGTTTTCAAGAACCCCCACGACCTCAATCGCCGTCCTAGCCTCCGATCG
76721644 TGACGGAGAATGGAGCAGAACGCGATAAGACTGGGTAAGTCTTCCTTCTCCCCTTTTATTCCCGT
716 TGACGGAGAATGGAGCAGAACGCGATAAGACTGGGTAAGTCTTCCTTCTCCCCTTTTATTCCCGT
76721709 TAAGAAATAAAATAAGGAAAAAAATAAAAAAACTAGATTCACCTT
781 TAAGAAATAAAATAAGGAAAAAAATAAAAAAACTAGATTCACCTT
76721754 T
1 T
76721755 GAAAAACAAA
Statistics
Matches: 826, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
825 826 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.27
Consensus pattern (825 bp):
TTTACAAAAGTAAAAAAAATTGAAATTAAAATATAAAAGTATATATATAATGTTTGTATGTACAA
AAATATATGTATGTATTTATAAAAGTTTTTTAAAAAATGTATGTATATGTATTACTTTAAAAAAC
ATGCGTATGTATATATAGTAGTAGTAATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAAATGGGGACTAAATCAAAATTAAACAGAATTTTAAGGTCAAACTTAAAAAACAAAAACAAAA
AAAAAGCTAAATCATATTTCGCATGAAAGGGGAAGGACCAAAGAAAGAGATATCCTCGCGCTGGC
AAAACGGCGCCGTTCCAGTGGGCGCATGCACATGGTTTCTGGACCATATTGAAACGTGAAAGAAA
TTTCGTGGCTAAATTGTAAATGCGTAAAGTACTGCATTTAAATCAAGAACAAAAACGGGGGACCA
AAAGCGAAAATTTCCCATTCAGGGCCAGAACGCGCGGATCCTCCCCCTCGGGTCGGGTCACCGCG
TGGGTCTGGCCACTTTAAACGGCGCCATTTTACCTTTTGTTTTAAATTAAATTAAAAAAACAGAG
AAAGAATTAGGGAAAAATCTATTTTCCCTTTTCCCTGAAGCAGACTGCTTCTTTAGGGTTTTATC
AACCCTTCAGCGTCGCTGTTTTCAAGAACCCCCACGACCTCAATCGCCGTCCTAGCCTCCGATCG
TGACGGAGAATGGAGCAGAACGCGATAAGACTGGGTAAGTCTTCCTTCTCCCCTTTTATTCCCGT
TAAGAAATAAAATAAGGAAAAAAATAAAAAAACTAGATTCACCTT
Found at i:76729787 original size:25 final size:26
Alignment explanation
Indices: 76729755--76729809 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
76729745 TTATTAAATT
*
76729755 ATATATTTTAATTATAA-TATATTTA
1 ATATATTTTAATAATAATTATATTTA
*
76729780 ATATA-TTTAATAATAATTATGTTTA
1 ATATATTTTAATAATAATTATATTTA
76729805 A-ATAT
1 ATATAT
76729810 GATTAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATATTTTAATAATAATTATATTTA
Found at i:76729996 original size:44 final size:45
Alignment explanation
Indices: 76729947--76730041 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
76729937 TTACACCTCT
* *
76729947 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
76729991 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
76730036 ATTACA
1 ATTACA
76730042 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:76730041 original size:16 final size:16
Alignment explanation
Indices: 76730022--76730073 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
76730012 GATTTGCTAT
* *
76730022 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
76730038 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
76730054 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
76730070 TACA
1 TACA
76730074 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:76730953 original size:19 final size:19
Alignment explanation
Indices: 76730931--76731056 Score: 66
Period size: 19 Copynumber: 6.7 Consensus size: 19
76730921 AGAAAATTAT
76730931 AAAAATTATAAAATATTTA
1 AAAAATTATAAAATATTTA
***
76730950 AAAAA-TATTAAAATGGATA
1 AAAAATTA-TAAAATATTTA
* * *
76730969 TAAAATTAT-AAACATTAA
1 AAAAATTATAAAATATTTA
76730987 AAAAATT-TAATAAATATTATA
1 AAAAATTAT-A-AAATATT-TA
* *
76731008 AAAAA-CA-AAAAT-TATA
1 AAAAATTATAAAATATTTA
*
76731024 ATAAATTATAAAAATATTTA
1 AAAAATTAT-AAAATATTTA
**
76731044 AAATTTTATAAAA
1 AAAAATTATAAAA
76731057 ACACATAAAA
Statistics
Matches: 76, Mismatches: 20, Indels: 22
0.64 0.17 0.19
Matches are distributed among these distances:
16 6 0.08
17 3 0.04
18 16 0.21
19 28 0.37
20 17 0.22
21 6 0.08
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (19 bp):
AAAAATTATAAAATATTTA
Found at i:76731000 original size:28 final size:27
Alignment explanation
Indices: 76730968--76731037 Score: 83
Period size: 26 Copynumber: 2.6 Consensus size: 27
76730958 TAAAATGGAT
76730968 ATAAAATTATAAACATTAA-AAAAATT-TA
1 ATAAAATTATAAA-A--AACAAAAATTATA
76730996 ATAAATATTATAAAAAACAAAAATTATA
1 ATAAA-ATTATAAAAAACAAAAATTATA
76731024 AT-AAATTATAAAAA
1 ATAAAATTATAAAAA
76731038 TATTTAAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
26 12 0.31
27 9 0.23
28 10 0.26
29 8 0.21
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (27 bp):
ATAAAATTATAAAAAACAAAAATTATA
Found at i:76731008 original size:37 final size:38
Alignment explanation
Indices: 76730926--76731048 Score: 98
Period size: 37 Copynumber: 3.3 Consensus size: 38
76730916 CATAGAGAAA
* *
76730926 ATTATAAAAATTATAAAATATT-TAAAAAA-TATTAAAAT
1 ATTAT-AAAATTACAAAA-ATTATAAAAAATTATAAAAAT
* *
76730964 GGA-TATAAAATTATAAACATTA-AAAAAATT-TAATAAAT
1 --ATTATAAAATTACAAAAATTATAAAAAATTATAA-AAAT
* *
76731002 ATTATAAAA-AACAAAAATTATAATAAATTATAAAAAT
1 ATTATAAAATTACAAAAATTATAAAAAATTATAAAAAT
76731039 ATT-TAAAATT
1 ATTATAAAATT
76731049 TTATAAAAAC
Statistics
Matches: 69, Mismatches: 7, Indels: 17
0.74 0.08 0.18
Matches are distributed among these distances:
36 14 0.20
37 32 0.46
38 19 0.28
39 3 0.04
40 1 0.01
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.34
Consensus pattern (38 bp):
ATTATAAAATTACAAAAATTATAAAAAATTATAAAAAT
Found at i:76731065 original size:30 final size:28
Alignment explanation
Indices: 76731031--76731099 Score: 75
Period size: 30 Copynumber: 2.4 Consensus size: 28
76731021 ATAATAAATT
*
76731031 ATAAAAATATTTAAAATTTTATAAAAACAC
1 ATAAAAATATTTAAAA-CTTATAAAAA-AC
* * *
76731061 ATAAAATTTCTTTAAAACTTATAAAAATC
1 ATAAAA-ATATTTAAAACTTATAAAAAAC
76731090 ATAAAAATAT
1 ATAAAAATAT
76731100 AAATATTTAA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
28 2 0.06
29 7 0.22
30 15 0.47
31 8 0.25
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (28 bp):
ATAAAAATATTTAAAACTTATAAAAAAC
Found at i:76731101 original size:8 final size:8
Alignment explanation
Indices: 76731080--76731195 Score: 54
Period size: 8 Copynumber: 13.0 Consensus size: 8
76731070 CTTTAAAACT
76731080 TATAAAAA
1 TATAAAAA
76731088 TCATAAAAA
1 T-ATAAAAA
*
76731097 TATAAATA
1 TATAAAAA
* *
76731105 TTTAAGAA
1 TATAAAAA
76731113 TATTAAAATAGA
1 TA-T-AAA-A-A
**
76731125 TATAAACT
1 TATAAAAA
*
76731133 TAAAAAAA
1 TATAAAAA
76731141 TTATAAAAAA
1 -TAT-AAAAA
76731151 TCATAAAAA
1 T-ATAAAAA
76731160 GTTATAAAAA
1 --TATAAAAA
76731170 TATAATAAA
1 TATAA-AAA
76731179 -ATATAAAA
1 TATA-AAAA
76731187 TATTAAAAA
1 TA-TAAAAA
76731196 AATCATTTAA
Statistics
Matches: 82, Mismatches: 12, Indels: 27
0.68 0.10 0.22
Matches are distributed among these distances:
8 29 0.35
9 26 0.32
10 21 0.26
11 3 0.04
12 3 0.04
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.29
Consensus pattern (8 bp):
TATAAAAA
Found at i:76731150 original size:10 final size:10
Alignment explanation
Indices: 76731135--76731198 Score: 64
Period size: 10 Copynumber: 6.7 Consensus size: 10
76731125 TATAAACTTA
76731135 AAAAAATTAT
1 AAAAAATTAT
*
76731145 AAAAAATCAT
1 AAAAAATTAT
*
76731155 AAAAAGTTAT
1 AAAAAATTAT
76731165 -AAAAA-TAT
1 AAAAAATTAT
76731173 AATAAAA-TAT
1 AA-AAAATTAT
*
76731183 AAAATATTA-
1 AAAAAATTAT
76731192 AAAAAAT
1 AAAAAAT
76731199 CATTTAAACC
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
8 3 0.07
9 14 0.31
10 28 0.62
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.27
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:76731158 original size:20 final size:19
Alignment explanation
Indices: 76731135--76731196 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
76731125 TATAAACTTA
76731135 AAAAAATTATAAAAAATCAT
1 AAAAAATTATAAAAAAT-AT
*
76731155 AAAAAGTTAT-AAAAATAT
1 AAAAAATTATAAAAAATAT
*
76731173 AATAAAA-TATAAAATAT-T
1 AA-AAAATTATAAAAAATAT
76731191 AAAAAA
1 AAAAAA
76731197 ATCATTTAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
17 4 0.11
18 10 0.27
19 14 0.38
20 9 0.24
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.26
Consensus pattern (19 bp):
AAAAAATTATAAAAAATAT
Found at i:76731196 original size:28 final size:28
Alignment explanation
Indices: 76731132--76731198 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 28
76731122 AGATATAAAC
76731132 TTAAAAAAATTATAAAAAATCATAAAAAG
1 TTAAAAAAA-TATAAAAAATCATAAAAAG
*
76731161 TTATAAAAATATAATAAAAT-ATAAAATA-
1 TTAAAAAAATATAA-AAAATCATAAAA-AG
76731189 TTAAAAAAAT
1 TTAAAAAAAT
76731199 CATTTAAACC
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
28 20 0.59
29 14 0.41
ACGTcount: A:0.69, C:0.01, G:0.01, T:0.28
Consensus pattern (28 bp):
TTAAAAAAATATAAAAAATCATAAAAAG
Found at i:76731197 original size:18 final size:17
Alignment explanation
Indices: 76731073--76731198 Score: 58
Period size: 18 Copynumber: 6.9 Consensus size: 17
76731063 AAAATTTCTT
* *
76731073 TAAAACTTATAAAAATCA
1 TAAAAATTAAAAAAAT-A
* * *
76731091 TAAAAA-TATAAATATT
1 TAAAAATTAAAAAAATA
*
76731107 TAAGAATATTAAAATAGATA
1 TAA-AA-ATTAAAA-AAATA
*
76731127 T-AAACTTAAAAAAATTA
1 TAAAAATTAAAAAAA-TA
**
76731144 TAAAAAATCATAAAAAGTTA
1 T-AAAAAT--TAAAAAAATA
*
76731164 TAAAAATATAATAAAATA
1 TAAAAAT-TAAAAAAATA
76731182 TAAAATATTAAAAAAAT
1 TAAAA-ATTAAAAAAAT
76731199 CATTTAAACC
Statistics
Matches: 83, Mismatches: 15, Indels: 20
0.70 0.13 0.17
Matches are distributed among these distances:
16 5 0.06
17 19 0.23
18 29 0.35
19 17 0.20
20 7 0.08
21 6 0.07
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.29
Consensus pattern (17 bp):
TAAAAATTAAAAAAATA
Found at i:76731792 original size:10 final size:10
Alignment explanation
Indices: 76731773--76731848 Score: 61
Period size: 10 Copynumber: 7.9 Consensus size: 10
76731763 TTTTATGTTC
76731773 TTTTAT-AAT
1 TTTTATAAAT
76731782 TTTTATAAAT
1 TTTTATAAAT
* *
76731792 TTGTATCAAT
1 TTTTATAAAT
* *
76731802 TTTAAT-ATT
1 TTTTATAAAT
76731811 TTTTAT-AAT
1 TTTTATAAAT
**
76731820 TTTTATAAGC
1 TTTTATAAAT
76731830 TTTTA-AGAAT
1 TTTTATA-AAT
76731840 TTTTATAAA
1 TTTTATAAA
76731849 ATTTCAAATA
Statistics
Matches: 52, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
9 22 0.42
10 29 0.56
11 1 0.02
ACGTcount: A:0.36, C:0.03, G:0.04, T:0.58
Consensus pattern (10 bp):
TTTTATAAAT
Found at i:76731833 original size:11 final size:9
Alignment explanation
Indices: 76731773--76731947 Score: 88
Period size: 9 Copynumber: 18.7 Consensus size: 9
76731763 TTTTATGTTC
76731773 TTTTATAAT
1 TTTTATAAT
76731782 TTTTATAAAT
1 TTTTAT-AAT
*
76731792 TTGTATCAAT
1 TTTTAT-AAT
* *
76731802 TTTAATATT
1 TTTTATAAT
76731811 TTTTATAAT
1 TTTTATAAT
76731820 TTTTATAAGCT
1 TTTTATAA--T
* *
76731831 TTTAAGAAT
1 TTTTATAAT
*
76731840 TTTTATAAAA
1 TTTTAT-AAT
*
76731850 TTTCA-AAT
1 TTTTATAAT
*
76731858 ATTTTAAATAT
1 -TTTTATA-AT
76731869 GTTTTATTAA-
1 -TTTTA-TAAT
76731879 TTTTATAAT
1 TTTTATAAT
*
76731888 TTATTAGAAT
1 TT-TTATAAT
*
76731898 TGTTAT-AT
1 TTTTATAAT
* *
76731906 TTCTACAAT
1 TTTTATAAT
*
76731915 ATTTATAAAT
1 TTTTAT-AAT
* *
76731925 TATTAT-TT
1 TTTTATAAT
76731933 TTTTATAAT
1 TTTTATAAT
76731942 TTTTAT
1 TTTTAT
76731948 GTCGATTTAA
Statistics
Matches: 122, Mismatches: 31, Indels: 26
0.68 0.17 0.15
Matches are distributed among these distances:
8 16 0.13
9 54 0.44
10 36 0.30
11 15 0.12
12 1 0.01
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.58
Consensus pattern (9 bp):
TTTTATAAT
Found at i:76731833 original size:29 final size:29
Alignment explanation
Indices: 76731772--76731847 Score: 86
Period size: 29 Copynumber: 2.7 Consensus size: 29
76731762 TTTTTATGTT
76731772 CTTTT-ATAATTTTTATAAATTTGTATCAA
1 CTTTTAATAATTTTTAT-AATTTGTATCAA
* *
76731801 -TTTTAATATTTTTTATAATTTTTAT-AA
1 CTTTTAATAATTTTTATAATTTGTATCAA
*
76731828 GCTTTTAAGAATTTTTATAA
1 -CTTTTAATAATTTTTATAA
76731848 AATTTCAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 2 0.05
28 12 0.30
29 26 0.65
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.58
Consensus pattern (29 bp):
CTTTTAATAATTTTTATAATTTGTATCAA
Found at i:76731974 original size:18 final size:19
Alignment explanation
Indices: 76731953--76731993 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
76731943 TTTATGTCGA
76731953 TTTAAT-TTTTTA-AATTAT
1 TTTAATATTTTTATAATT-T
76731971 TTT-ATATTTTTATAATTT
1 TTTAATATTTTTATAATTT
76731989 TTTAA
1 TTTAA
76731994 AAATTTTATG
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
17 2 0.10
18 13 0.65
19 5 0.25
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTAATATTTTTATAATTT
Found at i:76735476 original size:11 final size:11
Alignment explanation
Indices: 76735451--76735488 Score: 67
Period size: 11 Copynumber: 3.4 Consensus size: 11
76735441 CACAAACAAA
76735451 TCCTCTCATATT
1 TCCTCTCA-ATT
76735463 TCCTCTCAATT
1 TCCTCTCAATT
76735474 TCCTCTCAATT
1 TCCTCTCAATT
76735485 TCCT
1 TCCT
76735489 TCCAAAATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 18 0.69
12 8 0.31
ACGTcount: A:0.16, C:0.37, G:0.00, T:0.47
Consensus pattern (11 bp):
TCCTCTCAATT
Found at i:76736692 original size:7 final size:7
Alignment explanation
Indices: 76736680--76736704 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
76736670 AGTCGATTGA
76736680 TATTTAG
1 TATTTAG
76736687 TATTTAG
1 TATTTAG
76736694 TATTTAG
1 TATTTAG
76736701 TATT
1 TATT
76736705 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:76737853 original size:43 final size:44
Alignment explanation
Indices: 76737801--76737899 Score: 119
Period size: 44 Copynumber: 2.2 Consensus size: 44
76737791 TTATTTGTAC
* * * *
76737801 AAATATTTTGA-ATATTTTGATATTATTTTATGTAAAAAAATAG
1 AAATTTTTTGAGATATTTTAATATTATTTGATGGAAAAAAATAG
* *
76737844 AAATTTTTTGAGTTATTTTAATATTATTTGATGGAATAAAATAG
1 AAATTTTTTGAGATATTTTAATATTATTTGATGGAAAAAAATAG
*
76737888 AAGTTTATTTGA
1 AAATTT-TTTGA
76737900 TGTAATAAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
43 10 0.21
44 32 0.68
45 5 0.11
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.47
Consensus pattern (44 bp):
AAATTTTTTGAGATATTTTAATATTATTTGATGGAAAAAAATAG
Found at i:76737862 original size:44 final size:45
Alignment explanation
Indices: 76737813--76737899 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 45
76737803 ATATTTTGAA
* * *
76737813 TATTTTGATATTATTTTATGTAAAAAAATAGAAATTT-TTTGAGT
1 TATTTTAATATTATTTGATGGAAAAAAATAGAAATTTATTTGAGT
* *
76737857 TATTTTAATATTATTTGATGGAATAAAATAGAAGTTTATTTGA
1 TATTTTAATATTATTTGATGGAAAAAAATAGAAATTTATTTGA
76737900 TGTAATAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 32 0.86
45 5 0.14
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.48
Consensus pattern (45 bp):
TATTTTAATATTATTTGATGGAAAAAAATAGAAATTTATTTGAGT
Found at i:76737934 original size:23 final size:23
Alignment explanation
Indices: 76737907--76738061 Score: 93
Period size: 23 Copynumber: 6.5 Consensus size: 23
76737897 TGATGTAATA
76737907 AAAACCCTAACCTAATTTAACCC
1 AAAACCCTAACCTAATTTAACCC
* *
76737930 TAAACCCTAACCTAATTTAATTAAAAACC
1 AAAACCCTAACCTAA--T--TT--AACCC
** ***
76737959 CTAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAATTTAACCC
76737982 AAAACCCTAAACCTTAACTTT-A---
1 AAAACCCT-AACC-TAA-TTTAACCC
**
76738004 AAAACCCTAACCTAATTTAATAC
1 AAAACCCTAACCTAATTTAACCC
***
76738027 AAAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAATTTAACCC
76738050 AAAACCCTAACC
1 AAAACCCTAACC
76738062 CTAACCTAAT
Statistics
Matches: 108, Mismatches: 11, Indels: 26
0.74 0.08 0.18
Matches are distributed among these distances:
19 3 0.03
20 4 0.04
21 4 0.04
22 8 0.07
23 55 0.51
24 4 0.04
25 7 0.06
26 3 0.03
27 3 0.03
29 17 0.16
ACGTcount: A:0.46, C:0.28, G:0.00, T:0.26
Consensus pattern (23 bp):
AAAACCCTAACCTAATTTAACCC
Done.