Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 229 of 235
Found at i:76970621 original size:18 final size:18
Alignment explanation
Indices: 76970598--76970633 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
76970588 TTCTTCCCTC
*
76970598 CATTCTTAATTATCGCGT
1 CATTCTCAATTATCGCGT
76970616 CATTCTCAATTATCGCGT
1 CATTCTCAATTATCGCGT
76970634 TTACCCCTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.25, G:0.11, T:0.42
Consensus pattern (18 bp):
CATTCTCAATTATCGCGT
Found at i:76976939 original size:20 final size:20
Alignment explanation
Indices: 76976916--76976954 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
76976906 AAATAAATAG
*
76976916 AATAAAAATATAATAATAAT
1 AATAAAAATATAAAAATAAT
*
76976936 AATAATAATATAAAAATAA
1 AATAAAAATATAAAAATAA
76976955 CAGCATCATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (20 bp):
AATAAAAATATAAAAATAAT
Found at i:76977713 original size:22 final size:21
Alignment explanation
Indices: 76977684--76977724 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
76977674 TCCATATGCA
76977684 AAATGAAAAAATAAAAAAATG
1 AAATGAAAAAATAAAAAAATG
* *
76977705 AAATAGAAAGATTAAAAAAA
1 AAAT-GAAAAAATAAAAAAA
76977725 AAAGCGAATC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.15
Consensus pattern (21 bp):
AAATGAAAAAATAAAAAAATG
Found at i:76981105 original size:39 final size:39
Alignment explanation
Indices: 76981051--76981130 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
76981041 GGTGTAAGTG
76981051 TTGAACAAGTATGCATCCGACACAAGTATGTTCAAGTTT
1 TTGAACAAGTATGCATCCGACACAAGTATGTTCAAGTTT
76981090 TTGAACAAGTATGCATCCGACACAAGTATGTTCAAGTTT
1 TTGAACAAGTATGCATCCGACACAAGTATGTTCAAGTTT
76981129 TT
1 TT
76981131 CTATATTTTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (39 bp):
TTGAACAAGTATGCATCCGACACAAGTATGTTCAAGTTT
Found at i:76983753 original size:24 final size:24
Alignment explanation
Indices: 76983721--76983849 Score: 132
Period size: 24 Copynumber: 4.9 Consensus size: 24
76983711 GGGAAGGACC
76983721 AACAAATATAACATAATTAAGAGA
1 AACAAATATAACATAATTAAGAGA
76983745 AACAAATATAACATAATTAAGAGA
1 AACAAATATAACATAATTAAGAGA
* * *
76983769 AACAAATATAATCATTCTATCTGTGGGAAAAGAGA
1 AACAAATATAA-CA---TA-AT-T--AAGA---GA
76983804 AACAAATATAACATAATTAAGAGA
1 AACAAATATAACATAATTAAGAGA
76983828 AACAAATATAACATAATTAAGA
1 AACAAATATAACATAATTAAGA
76983850 CTTCAACTTA
Statistics
Matches: 88, Mismatches: 6, Indels: 22
0.76 0.05 0.19
Matches are distributed among these distances:
24 59 0.67
25 2 0.02
27 2 0.02
28 2 0.02
29 2 0.02
30 2 0.02
31 2 0.02
32 2 0.02
34 2 0.02
35 13 0.15
ACGTcount: A:0.58, C:0.09, G:0.10, T:0.22
Consensus pattern (24 bp):
AACAAATATAACATAATTAAGAGA
Found at i:76986786 original size:20 final size:20
Alignment explanation
Indices: 76986761--76986801 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
76986751 ACTCAAAGAT
76986761 TAATTTAATAGGGTTTTCAA
1 TAATTTAATAGGGTTTTCAA
*
76986781 TAATTTAATAGGTTTTTCAA
1 TAATTTAATAGGGTTTTCAA
76986801 T
1 T
76986802 TTATCAGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.34, C:0.05, G:0.12, T:0.49
Consensus pattern (20 bp):
TAATTTAATAGGGTTTTCAA
Found at i:76992784 original size:138 final size:138
Alignment explanation
Indices: 76992604--76992896 Score: 568
Period size: 138 Copynumber: 2.1 Consensus size: 138
76992594 ACTTTTTATG
*
76992604 CAATTTAATCCGTAAACCTGAAACTTACAATTTAAACACTTTTAATTAAAATTCATGCTAGTCGA
1 CAATTTAATCCCTAAACCTGAAACTTACAATTTAAACACTTTTAATTAAAATTCATGCTAGTCGA
76992669 TTTTCCCTTAGTCTTATAAAAGCCCATATTTTTCCTCATTTCACACAATTTACATTAAATTTTAC
66 TTTTCCCTTAGTCTTATAAAAGCCCATATTTTTCCTCATTTCACACAATTTACATTAAATTTTAC
76992734 TATTTCAA
131 TATTTCAA
*
76992742 CAATTTAATCCCTAAACCTGAAACTTACAATTTAAACGCTTTTAATTAAAATTCATGCTAGTCGA
1 CAATTTAATCCCTAAACCTGAAACTTACAATTTAAACACTTTTAATTAAAATTCATGCTAGTCGA
76992807 TTTTCCCTTAGTCTTATAAAAGCCCATATTTTTCCTCATTTCACACAATTTACATTAAATTTTAC
66 TTTTCCCTTAGTCTTATAAAAGCCCATATTTTTCCTCATTTCACACAATTTACATTAAATTTTAC
76992872 TATTTCAA
131 TATTTCAA
76992880 CAATTTAATCCCTAAAC
1 CAATTTAATCCCTAAAC
76992897 ATTAAAAACA
Statistics
Matches: 153, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
138 153 1.00
ACGTcount: A:0.35, C:0.21, G:0.05, T:0.39
Consensus pattern (138 bp):
CAATTTAATCCCTAAACCTGAAACTTACAATTTAAACACTTTTAATTAAAATTCATGCTAGTCGA
TTTTCCCTTAGTCTTATAAAAGCCCATATTTTTCCTCATTTCACACAATTTACATTAAATTTTAC
TATTTCAA
Found at i:76995080 original size:29 final size:29
Alignment explanation
Indices: 76995038--76995106 Score: 129
Period size: 29 Copynumber: 2.4 Consensus size: 29
76995028 GGTATGATCT
*
76995038 ATTAACTGTTTTGTAGGGTTACTCAACAG
1 ATTAACTATTTTGTAGGGTTACTCAACAG
76995067 ATTAACTATTTTGTAGGGTTACTCAACAG
1 ATTAACTATTTTGTAGGGTTACTCAACAG
76995096 ATTAACTATTT
1 ATTAACTATTT
76995107 GGGAAAGTAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.41
Consensus pattern (29 bp):
ATTAACTATTTTGTAGGGTTACTCAACAG
Found at i:76999365 original size:20 final size:19
Alignment explanation
Indices: 76999337--76999384 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 19
76999327 AATAAATAAA
* * *
76999337 AAAATAAAAAAGGAAAAGG
1 AAAAGAAAAAAGAAAAACG
76999356 AAAAGGAAAAAAGAAAAACG
1 AAAA-GAAAAAAGAAAAACG
76999376 AAAAGAAAA
1 AAAAGAAAA
76999385 CAATAAGATC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 9 0.36
20 16 0.64
ACGTcount: A:0.77, C:0.02, G:0.19, T:0.02
Consensus pattern (19 bp):
AAAAGAAAAAAGAAAAACG
Found at i:77014950 original size:8 final size:8
Alignment explanation
Indices: 77014937--77014961 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
77014927 ATATATACTA
77014937 AATAAAAT
1 AATAAAAT
77014945 AATAAAAT
1 AATAAAAT
77014953 AATAAAAT
1 AATAAAAT
77014961 A
1 A
77014962 TTATTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:77015475 original size:23 final size:23
Alignment explanation
Indices: 77015440--77015490 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
77015430 ACCTACTTTC
* * *
77015440 TTACTGTATTAATTTTCGGGGTA
1 TTACAGTAGTAATTTTCGGGATA
77015463 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAGTAATTTTCGGGATA
77015486 TTACA
1 TTACA
77015491 CCTTAAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.27, C:0.10, G:0.20, T:0.43
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:77016567 original size:128 final size:128
Alignment explanation
Indices: 77016339--77016594 Score: 343
Period size: 128 Copynumber: 2.0 Consensus size: 128
77016329 TAAACGGATT
* * * * *
77016339 CATGATCTATTCTTTTTGGGTCTAGTCCGATGTACTGTTAGTCCAGTCAGTCACATCTATGTCTT
1 CATGATCTATTCTTCTTGAGTCTAGTCCGATGTACTATCAGTCCAGTCAATCACATCTATGTCTT
* * * * * ** *
77016404 TATCTTTTGGGAGTCATTCGCTCTAATGTGCAAGACAAAGCATCTCC-CAAATTGGACTTGATA
66 TATCTTCTAGGAGTCATCCACTCCAATGCCCAAGACAAAACATCTCCTC-AATTGGACTTGATA
* * *
77016467 CATGATCTATTCTTCTTGAGTCTAGTCTGATGTACTATCAGTCTAGTTAATCACATCTATGTCTT
1 CATGATCTATTCTTCTTGAGTCTAGTCCGATGTACTATCAGTCCAGTCAATCACATCTATGTCTT
*
77016532 TATCTTCTAGGAGTCATCCACTCCAATGCCCAAGACAAAACATTTCCTCAATTGGACTTGATA
66 TATCTTCTAGGAGTCATCCACTCCAATGCCCAAGACAAAACATCTCCTCAATTGGACTTGATA
77016595 GACGACATAT
Statistics
Matches: 110, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
128 109 0.99
129 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.36
Consensus pattern (128 bp):
CATGATCTATTCTTCTTGAGTCTAGTCCGATGTACTATCAGTCCAGTCAATCACATCTATGTCTT
TATCTTCTAGGAGTCATCCACTCCAATGCCCAAGACAAAACATCTCCTCAATTGGACTTGATA
Found at i:77017317 original size:15 final size:15
Alignment explanation
Indices: 77017297--77017326 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
77017287 CTTTTTTGGC
*
77017297 CGATTTGCTTTCTGT
1 CGATTTGCTCTCTGT
77017312 CGATTTGCTCTCTGT
1 CGATTTGCTCTCTGT
77017327 TTTACCCTCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.23, G:0.20, T:0.50
Consensus pattern (15 bp):
CGATTTGCTCTCTGT
Found at i:77019795 original size:18 final size:17
Alignment explanation
Indices: 77019769--77019803 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
77019759 AATATTAAGA
*
77019769 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
77019786 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
77019804 TTAATAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:77019815 original size:120 final size:120
Alignment explanation
Indices: 77019662--77019945 Score: 446
Period size: 120 Copynumber: 2.4 Consensus size: 120
77019652 TAATTGAAAA
* * *
77019662 TATATATTTT-ATTAAATTATATTTAATAATAATTATGTTAAATTATATTTCATAGTATTATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATA
* *
77019726 TTATGATTTTAGAAAATTCATATAAGAATATTTAA-TATTAAGAATTTTATTAAAT
66 TTATGATTTCAGAAAATTAATATAAGAATA-TTAATTATTAAGAATTTTATTAAAT
* * *
77019781 TATATATTTTAATTAAAATATATTTAATAGTAATTATGTTAATTTATATTTTACAGTATCATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATA
*
77019846 TTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
66 TTATGATTTCAGAAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
*
77019901 TATATATTTTAATTAAAATATATTTAATAAAAATTATGTTTAAAT
1 TATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
77019946 ATGATTAAAT
Statistics
Matches: 150, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
119 14 0.09
120 131 0.87
121 5 0.03
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (120 bp):
TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATA
TTATGATTTCAGAAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
Found at i:77019917 original size:18 final size:17
Alignment explanation
Indices: 77019889--77019923 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
77019879 ATTATTAAGA
*
77019889 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
77019906 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
77019924 TTAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:77019923 original size:16 final size:16
Alignment explanation
Indices: 77019889--77019943 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
77019879 ATTATTAAGA
77019889 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
77019906 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
77019922 A-TTTAATAAAAAT-T
1 ATTTTAATTAAAATAT
77019936 ATGTTTAA
1 AT-TTTAA
77019944 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:77020180 original size:16 final size:16
Alignment explanation
Indices: 77020159--77020210 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
77020149 GATTTGCTAT
77020159 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
77020175 TACACCTTTAATCCAA
1 TACACCTCTAATCCAA
77020191 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
77020207 TACA
1 TACA
77020211 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.27
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:77041112 original size:13 final size:15
Alignment explanation
Indices: 77041094--77041128 Score: 56
Period size: 13 Copynumber: 2.5 Consensus size: 15
77041084 ATTTAACTTC
77041094 TTAAAAATAT-AAT-
1 TTAAAAATATAAATA
77041107 TTAAAAATATAAATA
1 TTAAAAATATAAATA
77041122 TTAAAAA
1 TTAAAAA
77041129 AGAAAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 10 0.50
14 3 0.15
15 7 0.35
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
TTAAAAATATAAATA
Found at i:77042626 original size:3 final size:3
Alignment explanation
Indices: 77042618--77042661 Score: 70
Period size: 3 Copynumber: 14.7 Consensus size: 3
77042608 TATATAGCAT
* *
77042618 ATG ATG ATG ATG ATG ATG ATG ACG ATG ATG AGG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
77042662 AATAATAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.34, C:0.02, G:0.34, T:0.30
Consensus pattern (3 bp):
ATG
Found at i:77042666 original size:3 final size:3
Alignment explanation
Indices: 77042660--77042685 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
77042650 GATGATGATG
77042660 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
77042686 TTATGACAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:77046039 original size:48 final size:48
Alignment explanation
Indices: 77045958--77046099 Score: 142
Period size: 48 Copynumber: 3.0 Consensus size: 48
77045948 AAAACTATTG
* ** **
77045958 ATACGTTGTGGATGAACCACTGGTCGTGTAGATA-AGCTACCGGTTAAA
1 ATACGTTGTGGATGAACCACTGGTTGTACAGATAGA-CTACCGACTAAA
**
77046006 ATACGTTGTGGATGAACCACTGGTTGTACAGATAGACTGTCGACTAAA
1 ATACGTTGTGGATGAACCACTGGTTGTACAGATAGACTACCGACTAAA
* ** * * * *
77046054 ATCCAATGTGGATGAACCACTGGTTGTGCAAATAAACTACTGACTA
1 ATACGTTGTGGATGAACCACTGGTTGTACAGATAGACTACCGACTA
77046100 CTTCCTCCAT
Statistics
Matches: 77, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
48 76 0.99
49 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (48 bp):
ATACGTTGTGGATGAACCACTGGTTGTACAGATAGACTACCGACTAAA
Found at i:77049115 original size:3 final size:3
Alignment explanation
Indices: 77049107--77049183 Score: 59
Period size: 3 Copynumber: 24.7 Consensus size: 3
77049097 TTTAGTCCTG
* * *
77049107 TTA TTA TTA TTA TTA TTA TTA -AA CTAA TCA GTT- TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA -TTA TTA TTA TTA TTA
*
77049152 TTA TTA TTGCA TTTA TTA TTA TAA TTA TTA TT
1 TTA TTA TT--A -TTA TTA TTA TTA TTA TTA TT
77049184 TACCCATTTA
Statistics
Matches: 62, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
2 3 0.05
3 52 0.84
4 4 0.06
5 1 0.02
6 2 0.03
ACGTcount: A:0.34, C:0.04, G:0.03, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:77049234 original size:16 final size:16
Alignment explanation
Indices: 77049213--77049252 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
77049203 TTAGATTTTT
*
77049213 TTATATATATACATAC
1 TTATATATATACACAC
77049229 TTATATATATACACAC
1 TTATATATATACACAC
*
77049245 TTACATAT
1 TTATATAT
77049253 TTCTAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (16 bp):
TTATATATATACACAC
Found at i:77049304 original size:16 final size:17
Alignment explanation
Indices: 77049285--77049316 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
77049275 TACGTACATT
77049285 TTTATATACAT-TATAA
1 TTTATATACATATATAA
77049301 TTTATATACATATATA
1 TTTATATACATATATA
77049317 CATACATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
TTTATATACATATATAA
Found at i:77049327 original size:24 final size:24
Alignment explanation
Indices: 77049287--77049332 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
77049277 CGTACATTTT
*
77049287 TATATACATTATAATTTATATACA
1 TATATACATCATAATTTATATACA
*
77049311 TATATACATACAT-ATTTTTATA
1 TATATACAT-CATAATTTATATA
77049333 GTATGTGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 17 0.89
25 2 0.11
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (24 bp):
TATATACATCATAATTTATATACA
Found at i:77054054 original size:117 final size:117
Alignment explanation
Indices: 77053842--77054060 Score: 259
Period size: 117 Copynumber: 1.9 Consensus size: 117
77053832 AATTTTCGGA
* **
77053842 TTAGGCTTAAGAATTGATAACTGTTGTTTGTTGATAAGGTGCCTTGGCTTATATAGATGGATTTA
1 TTAGGCTTAAGAAATGATAACTGTTGTTTGTTGATAAGGTGCCTTGGCTTATATAGATGGATGGA
* *
77053907 TATATCCAGTTGTAGTGTAATTAAGTGG-AAATTATGTGTTTTGTGTTGTTGG
66 GATATCCAATTGTAGTGTAATTAAG-GGAAAATTATGTGTTTTGTGTTGTTGG
*
77053959 TTAGGCTTAAGAAATGATAACTGTTGTTTGTTGAT-AGTGTTG-CTT-GCTTTAATATGGATGGA
1 TTAGGCTTAAGAAATGATAACTGTTGTTTGTTGATAAG-G-TGCCTTGGC-TT-ATATAGATGGA
* * **
77054021 TGGGGCTATTGAATTGTAGTGTAATTATA-GGAAAATTATG
62 TGGAGATATCCAATTGTAGTGTAATTA-AGGGAAAATTATG
77054061 CATGTATGTC
Statistics
Matches: 86, Mismatches: 10, Indels: 11
0.80 0.09 0.10
Matches are distributed among these distances:
116 4 0.05
117 42 0.49
118 39 0.45
119 1 0.01
ACGTcount: A:0.26, C:0.05, G:0.26, T:0.42
Consensus pattern (117 bp):
TTAGGCTTAAGAAATGATAACTGTTGTTTGTTGATAAGGTGCCTTGGCTTATATAGATGGATGGA
GATATCCAATTGTAGTGTAATTAAGGGAAAATTATGTGTTTTGTGTTGTTGG
Found at i:77055290 original size:37 final size:37
Alignment explanation
Indices: 77055247--77055335 Score: 160
Period size: 37 Copynumber: 2.4 Consensus size: 37
77055237 ATTATAAATA
*
77055247 AATAAACTAATCAATGTTCAAACTTTGAACATGCTTT
1 AATAAACTAATCAATGTTAAAACTTTGAACATGCTTT
*
77055284 AGTAAACTAATCAATGTTAAAACTTTGAACATGCTTT
1 AATAAACTAATCAATGTTAAAACTTTGAACATGCTTT
77055321 AATAAACTAATCAAT
1 AATAAACTAATCAAT
77055336 ATATTTATAC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.44, C:0.15, G:0.08, T:0.34
Consensus pattern (37 bp):
AATAAACTAATCAATGTTAAAACTTTGAACATGCTTT
Found at i:77055564 original size:33 final size:33
Alignment explanation
Indices: 77055527--77055592 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
77055517 AATCTAACAA
77055527 ATACCAACAATTAATTTTAGGTCAATTATACAT
1 ATACCAACAATTAATTTTAGGTCAATTATACAT
77055560 ATACCAACAATTAATTTTAGGTCAATTATACAT
1 ATACCAACAATTAATTTTAGGTCAATTATACAT
77055593 GCTTTATAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.42, C:0.15, G:0.06, T:0.36
Consensus pattern (33 bp):
ATACCAACAATTAATTTTAGGTCAATTATACAT
Found at i:77056924 original size:11 final size:11
Alignment explanation
Indices: 77056910--77056935 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
77056900 ATTTTTTAAA
77056910 TTTTAAAATAC
1 TTTTAAAATAC
77056921 TTTTAAAATAC
1 TTTTAAAATAC
77056932 TTTT
1 TTTT
77056936 TTTAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (11 bp):
TTTTAAAATAC
Found at i:77056964 original size:11 final size:11
Alignment explanation
Indices: 77056950--77056989 Score: 71
Period size: 11 Copynumber: 3.5 Consensus size: 11
77056940 ATTTTTTTTA
77056950 ATTTTAAAAAT
1 ATTTTAAAAAT
77056961 ATTTTAAAAAT
1 ATTTTAAAAAT
77056972 ATTTTAAAAAT
1 ATTTTAAAAAT
77056983 ACTTTTA
1 A-TTTTA
77056990 TTTTTTTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
11 23 0.82
12 5 0.18
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (11 bp):
ATTTTAAAAAT
Found at i:77057042 original size:38 final size:37
Alignment explanation
Indices: 77056961--77057061 Score: 104
Period size: 34 Copynumber: 2.8 Consensus size: 37
77056951 TTTTAAAAAT
* *
77056961 ATTTTAAAAATATTTTAAAAAT-ACTTTTATTTTTTTTA
1 ATTTT-AAAATATTTTTAAAATAAATTTT-TTTTTTTTA
*
77056999 ATTTTAAAATATTTTTAAAATAAATTTTTTTTATTTTT
1 ATTTTAAAATATTTTTAAAATAAATTTTTTTT-TTTTA
*
77057037 GTTTT---A-ATTTTTAAAATAAATTTTT
1 ATTTTAAAATATTTTTAAAATAAATTTTT
77057062 GGTATTTATT
Statistics
Matches: 57, Mismatches: 4, Indels: 8
0.83 0.06 0.12
Matches are distributed among these distances:
34 19 0.33
35 1 0.02
37 19 0.33
38 18 0.32
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.60
Consensus pattern (37 bp):
ATTTTAAAATATTTTTAAAATAAATTTTTTTTTTTTA
Found at i:77059286 original size:91 final size:91
Alignment explanation
Indices: 77059139--77059346 Score: 335
Period size: 91 Copynumber: 2.3 Consensus size: 91
77059129 TTGATTTTAG
* *
77059139 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
77059204 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
*
77059231 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
77059296 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* *
77059322 CAAATTCATATAAGATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
77059347 GTTATAATTA
Statistics
Matches: 108, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
91 92 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:77059315 original size:26 final size:28
Alignment explanation
Indices: 77059261--77059321 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
77059251 TATTATCAAG
* *
77059261 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
77059289 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
77059315 AATTATA
1 AATTATA
77059322 CAAATTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:77059321 original size:44 final size:43
Alignment explanation
Indices: 77059179--77059321 Score: 121
Period size: 44 Copynumber: 3.2 Consensus size: 43
77059169 GAATTTTATG
* *
77059179 AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTT
1 AAATTATATATTATTATTAAATTATA-TTAATAATAATTATTTT
* ** * *
77059223 AAATTGTATAAATTCATATAAGAAAATT-TATT-ATCAAGAATT-TTATG
1 AAA-T-TATATATT-AT-T-ATTAAATTATATTAAT-AATAATTATT-TT
77059270 AAATTATATATTATTATTAAATTATATGTAATAATAATTATTTT
1 AAATTATATATTATTATTAAATTATAT-TAATAATAATTATTTT
77059314 AAATTATA
1 AAATTATA
77059322 CAAATTCATA
Statistics
Matches: 76, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
42 6 0.08
43 4 0.05
44 21 0.28
45 12 0.16
46 11 0.14
47 13 0.17
48 3 0.04
49 6 0.08
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.48
Consensus pattern (43 bp):
AAATTATATATTATTATTAAATTATATTAATAATAATTATTTT
Found at i:77059439 original size:59 final size:57
Alignment explanation
Indices: 77059373--77059801 Score: 225
Period size: 59 Copynumber: 7.2 Consensus size: 57
77059363 ATTTTATTAA
77059373 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATCTTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTAT-TTTTATAGT
* * ** * *
77059432 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATT-TTATTA-A--
1 ATCATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTA-AATTATTTTTATAGT
* * *
77059493 ATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTAT-TTTTATAGT
* * ** * * *
77059552 ATCGTATATTATTATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATT-TTATTA-A--
1 ATCATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTA-AATTATTTTTATAGT
* *
77059613 ATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATCTTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTAT-TTTTATAGT
* * ** * *
77059672 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTA-TTAAA--AATTTTATTA-A
1 ATCATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTAAATTATTTTTA-TAGT
* * ** *
77059733 ATTATATATTTTAATTATAATATATTTAATAAGAATTATGTTAATTTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTAT-TTTTATAGT
77059792 ATCATATATT
1 ATCATATATT
77059802 ATGATTTGAG
Statistics
Matches: 274, Mismatches: 54, Indels: 84
0.67 0.13 0.20
Matches are distributed among these distances:
54 38 0.14
55 18 0.07
56 15 0.05
57 9 0.03
58 3 0.01
59 44 0.16
60 26 0.09
61 34 0.12
62 3 0.01
63 10 0.04
64 16 0.06
65 17 0.06
66 41 0.15
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (57 bp):
ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTATTTTTATAGT
Found at i:77059486 original size:120 final size:120
Alignment explanation
Indices: 77059362--77059899 Score: 925
Period size: 120 Copynumber: 4.5 Consensus size: 120
77059352 AATTATTTTA
* * * *
77059362 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-AAATTATATTT
77059426 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
77059482 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
* * *
77059547 ATAGTATCGTATATTATTATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
77059602 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
*
77059667 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAA
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
77059722 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAAGAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
*
77059787 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
77059842 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAACTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG-TTAAAT
77059900 ATGATTAAAT
Statistics
Matches: 394, Mismatches: 22, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
120 387 0.98
121 7 0.02
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:77059517 original size:16 final size:16
Alignment explanation
Indices: 77059496--77059542 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
77059486 TTATTAAATT
77059496 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
77059512 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
77059527 AT-TATGTTAAATTATA
1 ATATAT-TTTAATTATA
77059543 TTTTATAGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.42
16 13 0.50
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:77059631 original size:18 final size:17
Alignment explanation
Indices: 77059603--77059637 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
77059593 ATTATTAAGA
*
77059603 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
77059620 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
77059638 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:77060465 original size:19 final size:18
Alignment explanation
Indices: 77060441--77060485 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
77060431 ATTAAAATAT
77060441 TTTAAAATTGAAGAAT-TAA
1 TTTAAAA-TG-AGAATATAA
77060460 TTTAAAATGAGAATCATAA
1 TTTAAAATGAGAAT-ATAA
77060479 TTTAAAA
1 TTTAAAA
77060486 ATGTATAGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.21
18 2 0.08
19 17 0.71
ACGTcount: A:0.53, C:0.02, G:0.09, T:0.36
Consensus pattern (18 bp):
TTTAAAATGAGAATATAA
Found at i:77061077 original size:95 final size:96
Alignment explanation
Indices: 77060933--77061238 Score: 345
Period size: 95 Copynumber: 3.2 Consensus size: 96
77060923 TAAATAATGG
* * * ** * *
77060933 ATTAGGGTTTAGGGTTTC-TCAATTAAATTAATTATAAAATTT-TCAAAATTGGATTA-GGTTTC
1 ATTAGGGTTTA-GGTTACTTGAA-TAAATTAATTATAAAGTTTAAAAAAATTAGATTAGGGTTTA
* *
77060995 GTGTTTATGGTTTTTAAAGAAAAAATCAATTAA
64 GTGTTTAGGGTTTTTAAAGAAAAAATCAAATAA
* *** *
77061028 ATTAGGGTTTAGGATTACTTGAATAATTTAATTA-ATTTTTTTAAAAAATTAGATTAGGGTTTAG
1 ATTAGGGTTTAGG-TTACTTGAATAAATTAATTATAAAGTTTAAAAAAATTAGATTAGGGTTTAG
*
77061092 TGTTAAGGGTTTTT-AAGAAAAAATCAAATAA
65 TGTTTAGGGTTTTTAAAGAAAAAATCAAATAA
* *
77061123 ATTAGGGTTTAAGGTTACTTGAGTAAATTAATTATAAAGTTTAAAAAAATTAGTTTAGGGTTTAG
1 ATTAGGGTTT-AGGTTACTTGAATAAATTAATTATAAAGTTTAAAAAAATTAGATTAGGGTTTAG
* * *
77061188 T-TTTAGGGTTATTAAGGAAAAACTCAAATAA
65 TGTTTAGGGTTTTTAAAGAAAAAATCAAATAA
77061219 ATTAGGGTTTAGGGTTACTT
1 ATTAGGGTTTA-GGTTACTT
77061239 AATTAAAAGA
Statistics
Matches: 179, Mismatches: 24, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
94 6 0.03
95 90 0.50
96 83 0.46
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.41
Consensus pattern (96 bp):
ATTAGGGTTTAGGTTACTTGAATAAATTAATTATAAAGTTTAAAAAAATTAGATTAGGGTTTAGT
GTTTAGGGTTTTTAAAGAAAAAATCAAATAA
Found at i:77062624 original size:18 final size:18
Alignment explanation
Indices: 77062598--77062640 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
77062588 GACTAGAAAA
* * *
77062598 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
77062616 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
77062634 AGGATAC
1 AGGATAC
77062641 GCACCTGACA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:77063293 original size:7 final size:7
Alignment explanation
Indices: 77063281--77063305 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
77063271 TATTAGTTAT
77063281 ATACATA
1 ATACATA
77063288 ATACATA
1 ATACATA
77063295 ATACATA
1 ATACATA
77063302 ATAC
1 ATAC
77063306 TAAATACTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (7 bp):
ATACATA
Found at i:77063311 original size:14 final size:14
Alignment explanation
Indices: 77063281--77063326 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
77063271 TATTAGTTAT
77063281 ATACATAATAC-ATA
1 ATACATAATACTA-A
77063295 ATACATAATACTAA
1 ATACATAATACTAA
*
77063309 ATAC-TAAATATTAA
1 ATACAT-AATACTAA
77063323 ATAC
1 ATAC
77063327 CAATCGACTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 1 0.03
14 27 0.93
15 1 0.03
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (14 bp):
ATACATAATACTAA
Found at i:77064504 original size:11 final size:11
Alignment explanation
Indices: 77064490--77064537 Score: 69
Period size: 11 Copynumber: 4.4 Consensus size: 11
77064480 GCTTTTTTTA
*
77064490 AGAGGATTTTG
1 AGAGGAATTTG
*
77064501 AGAGAAATTTG
1 AGAGGAATTTG
77064512 AGAGGAATTTG
1 AGAGGAATTTG
*
77064523 AGAGGAACTTG
1 AGAGGAATTTG
77064534 AGAG
1 AGAG
77064538 AATATTAGAG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 33 1.00
ACGTcount: A:0.38, C:0.02, G:0.35, T:0.25
Consensus pattern (11 bp):
AGAGGAATTTG
Found at i:77064522 original size:22 final size:22
Alignment explanation
Indices: 77064490--77064553 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
77064480 GCTTTTTTTA
*
77064490 AGAGGATTTTGAGAGAAATTTG
1 AGAGGAATTTGAGAGAAATTTG
* *
77064512 AGAGGAATTTGAGAGGAACTTG
1 AGAGGAATTTGAGAGAAATTTG
77064534 AGA-GAATATTAGAGAGAAAT
1 AGAGGAAT-TT-GAGAGAAAT
77064554 CGAGAGAAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 4 0.11
22 24 0.69
23 7 0.20
ACGTcount: A:0.42, C:0.02, G:0.31, T:0.25
Consensus pattern (22 bp):
AGAGGAATTTGAGAGAAATTTG
Found at i:77064950 original size:25 final size:25
Alignment explanation
Indices: 77064909--77064956 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
77064899 TTTAGAGTAA
*
77064909 AAAATAAAAATTATTCCCAAAAGTG
1 AAAATAAAAATTATTCCAAAAAGTG
*
77064934 AAAATAGAAAA-TGTTCCAAAAAG
1 AAAATA-AAAATTATTCCAAAAAG
77064957 GGAGAGAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.58, C:0.10, G:0.10, T:0.21
Consensus pattern (25 bp):
AAAATAAAAATTATTCCAAAAAGTG
Found at i:77076205 original size:54 final size:55
Alignment explanation
Indices: 77076146--77076254 Score: 184
Period size: 54 Copynumber: 2.0 Consensus size: 55
77076136 AATTAGGTCC
77076146 TACAAATAAATTTCTATTGAAATTACCTAATAAAATCATCTCA-AAAAAAATTAA
1 TACAAATAAATTTCTATTGAAATTACCTAATAAAATCATCTCATAAAAAAATTAA
* * *
77076200 TACAAATCAATTTCTATTGAAATTACCTAATAAAATCATCTTATAAACAAATTAA
1 TACAAATAAATTTCTATTGAAATTACCTAATAAAATCATCTCATAAAAAAATTAA
77076255 AGCTTCAATT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
54 41 0.80
55 10 0.20
ACGTcount: A:0.51, C:0.14, G:0.02, T:0.33
Consensus pattern (55 bp):
TACAAATAAATTTCTATTGAAATTACCTAATAAAATCATCTCATAAAAAAATTAA
Found at i:77077702 original size:7 final size:7
Alignment explanation
Indices: 77077690--77077714 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
77077680 TGAAAATGAT
77077690 TAAAATA
1 TAAAATA
77077697 TAAAATA
1 TAAAATA
77077704 TAAAATA
1 TAAAATA
77077711 TAAA
1 TAAA
77077715 CAAGAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
TAAAATA
Found at i:77078505 original size:22 final size:22
Alignment explanation
Indices: 77078477--77078522 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
77078467 GGAAGCTTTC
*
77078477 ACATTTGATCTGTCTGCCATTA
1 ACATTTGATCTGTCGGCCATTA
77078499 ACATTTGATCTGTCGGCCATTA
1 ACATTTGATCTGTCGGCCATTA
77078521 AC
1 AC
77078523 TAGATTCGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (22 bp):
ACATTTGATCTGTCGGCCATTA
Found at i:77085804 original size:21 final size:22
Alignment explanation
Indices: 77085780--77085820 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
77085770 AAACGATGTA
*
77085780 GTTTTGTCTTTTAA-TTTAATG
1 GTTTTGACTTTTAACTTTAATG
77085801 GTTTTGACTTTTAACTTTAA
1 GTTTTGACTTTTAACTTTAA
77085821 AAAAGTGAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.22, C:0.07, G:0.12, T:0.59
Consensus pattern (22 bp):
GTTTTGACTTTTAACTTTAATG
Found at i:77085854 original size:69 final size:67
Alignment explanation
Indices: 77085729--77085860 Score: 165
Period size: 69 Copynumber: 1.9 Consensus size: 67
77085719 ATAAATGATA
* ** * * * *
77085729 TAATGATTTTGTCTTTTAACTTAATGAGTAAACATTTATTAAAACGATGTAGTTTTGTCTTTTAA
1 TAATGATTTTGACTTTTAACTTAAAAAGTAAACATTTATCAAAACGACGTAATTTTGCCTTTTAA
77085794 TT
66 TT
* *
77085796 TAATGGTTTTGACTTTTAACTTTAAAAAAGTGAACATTTATCAAAACGACGTAATTTTGCCTTTT
1 TAATGATTTTGACTTTTAAC-TT-AAAAAGTAAACATTTATCAAAACGACGTAATTTTGCCTTTT
77085861 CTTATTAGGA
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
67 18 0.33
68 2 0.04
69 34 0.63
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (67 bp):
TAATGATTTTGACTTTTAACTTAAAAAGTAAACATTTATCAAAACGACGTAATTTTGCCTTTTAA
TT
Found at i:77096948 original size:16 final size:17
Alignment explanation
Indices: 77096929--77096968 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
77096919 AAAAAAAAGG
77096929 CAAAAAA-GTAAAAAAA
1 CAAAAAAGGTAAAAAAA
77096945 CAAAAAAGGTAAAAAAA
1 CAAAAAAGGTAAAAAAA
77096962 CAAAAAA
1 CAAAAAA
77096969 AAAGAGAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 7 0.30
17 16 0.70
ACGTcount: A:0.80, C:0.07, G:0.07, T:0.05
Consensus pattern (17 bp):
CAAAAAAGGTAAAAAAA
Found at i:77096958 original size:25 final size:25
Alignment explanation
Indices: 77096921--77096969 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
77096911 TGGAGGCAAA
**
77096921 AAAAAAGGCAAAAAAGTAAAAAAAC
1 AAAAAAGGCAAAAAAACAAAAAAAC
*
77096946 AAAAAAGGTAAAAAAACAAAAAAA
1 AAAAAAGGCAAAAAAACAAAAAAA
77096970 AAGAGAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.80, C:0.06, G:0.10, T:0.04
Consensus pattern (25 bp):
AAAAAAGGCAAAAAAACAAAAAAAC
Found at i:77096971 original size:22 final size:22
Alignment explanation
Indices: 77096918--77096991 Score: 71
Period size: 22 Copynumber: 3.2 Consensus size: 22
77096908 TAGTGGAGGC
77096918 AAAAAAAAAGGCAAAAAAGTAA-AA
1 AAAAAAAAAGG-AAAAAA--AACAA
*
77096942 AAACAAAAAAGGTAAAAAAACAA
1 AAA-AAAAAAGGAAAAAAAACAA
*
77096965 AAAAAAAGA-GAATAAAAAACAA
1 AAAAAAAAAGGAA-AAAAAACAA
77096987 AAAAA
1 AAAAA
77096992 CCTCTACCGG
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
21 2 0.05
22 21 0.48
23 5 0.11
24 8 0.18
25 8 0.18
ACGTcount: A:0.81, C:0.05, G:0.09, T:0.04
Consensus pattern (22 bp):
AAAAAAAAAGGAAAAAAAACAA
Found at i:77098460 original size:45 final size:45
Alignment explanation
Indices: 77098396--77098780 Score: 426
Period size: 45 Copynumber: 8.6 Consensus size: 45
77098386 TAAAGTCATT
77098396 ATAGC-AGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAG
1 ATAGCAAG-TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAG
* *
77098441 ATAGCAAGTCTTGTCTTCCTGTATTGGCAGTGAAGTGGA-CTGAAG
1 ATAGCAAGTCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC-GAAG
* * *
77098486 ATAGC-AGATCTTGTCTTCCTTTATTGGTAGCGAAGTAGATCGAAT
1 ATAGCAAG-TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAG
* * *
77098531 ATAGCAAGTCTTGTCTTCCTGTATTGGCAGCAAAATGGA-CTGAAG
1 ATAGCAAGTCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC-GAAG
*
77098576 ATAGCATA-TCTTGTCTTCCTGTATTGGCAGGGAAGTAGATCGAAG
1 ATAGCA-AGTCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAG
* * *
77098621 ATAGCAAGTCTTGTCTTCCTGTATTGACAGCGAAGTGGATTGAAG
1 ATAGCAAGTCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAG
* * *
77098666 ATAGCAAGTCTTGTCTTCCTGTATTGGTAGTGAAGTAGA-CTAAAG
1 ATAGCAAGTCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC-GAAG
* * * * * *
77098711 ATAGC-AGATCTTGCCTTCCTGTACTGACGGCAAAGCAGATCGAAG
1 ATAGCAAG-TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAG
* * * *
77098756 ACA-CTAGCCTTGCCTTCCTGTATTG
1 ATAGCAAGTCTTGTCTTCCTGTATTG
77098781 ACGGTGGAGC
Statistics
Matches: 288, Mismatches: 39, Indels: 27
0.81 0.11 0.08
Matches are distributed among these distances:
44 24 0.08
45 256 0.89
46 8 0.03
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (45 bp):
ATAGCAAGTCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAG
Found at i:77098549 original size:90 final size:90
Alignment explanation
Indices: 77098396--77098733 Score: 502
Period size: 90 Copynumber: 3.8 Consensus size: 90
77098386 TAAAGTCATT
77098396 ATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAAGTCTTGTCTTCCT
1 ATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAAGTCTTGTCTTCCT
*
77098461 GTATTGGCAGTGAAGTGGACTGAAG
66 GTATTGGCAGCGAAGTGGACTGAAG
* * *
77098486 ATAGCAGATCTTGTCTTCCTTTATTGGTAGCGAAGTAGATCGAATATAGCAAGTCTTGTCTTCCT
1 ATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAAGTCTTGTCTTCCT
* *
77098551 GTATTGGCAGCAAAATGGACTGAAG
66 GTATTGGCAGCGAAGTGGACTGAAG
* *
77098576 ATAGCATATCTTGTCTTCCTGTATTGGCAGGGAAGTAGATCGAAGATAGCAAGTCTTGTCTTCCT
1 ATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAAGTCTTGTCTTCCT
* *
77098641 GTATTGACAGCGAAGTGGATTGAAG
66 GTATTGGCAGCGAAGTGGACTGAAG
* * * *
77098666 ATAGCA-AGTCTTGTCTTCCTGTATTGGTAGTGAAGTAGA-CTAAAGATAGC-AGATCTTGCCTT
1 ATAGCAGA-TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC-GAAGATAGCAAG-TCTTGTCTT
77098728 CCTGTA
63 CCTGTA
77098734 CTGACGGCAA
Statistics
Matches: 226, Mismatches: 19, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
89 4 0.02
90 222 0.98
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.32
Consensus pattern (90 bp):
ATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAAGTCTTGTCTTCCT
GTATTGGCAGCGAAGTGGACTGAAG
Found at i:77098837 original size:45 final size:45
Alignment explanation
Indices: 77098716--77098847 Score: 151
Period size: 44 Copynumber: 3.0 Consensus size: 45
77098706 TAAAGATAGC
* * * *
77098716 AGATCTTGCCTTCCTGTACTGACGGCAAAGCAGATCGAAGACACT
1 AGATCTTGCCTTCCTGTATTGACGGCGAAGCAAATCGAAGACAAT
* * * *
77098761 AG-CCTTGCCTTCCTGTATTGACGGTGGAGCAAA-CTGAAGATAAT
1 AGATCTTGCCTTCCTGTATTGACGGCGAAGCAAATC-GAAGACAAT
* *
77098805 AGATCTTGCCTTCCTGCATTGATGGCGAAGCAAATCGAAGACA
1 AGATCTTGCCTTCCTGTATTGACGGCGAAGCAAATCGAAGACA
77098848 CCATAGTTTG
Statistics
Matches: 70, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
43 1 0.01
44 34 0.49
45 34 0.49
46 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.24
Consensus pattern (45 bp):
AGATCTTGCCTTCCTGTATTGACGGCGAAGCAAATCGAAGACAAT
Found at i:77099058 original size:96 final size:98
Alignment explanation
Indices: 77098917--77099170 Score: 296
Period size: 100 Copynumber: 2.6 Consensus size: 98
77098907 GTAGTGAAAT
* * * * * * * *
77098917 AGATTAAAGCTACGACTGCGAATATTGTTTCTCTGACATTACAATTAAAAAGATTGAAGCCGCAA
1 AGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGACATTGCAATTTAAAATATTGAAGCCACAA
*
77098982 CGACGAATCTTAC-T-TGGAAGTGCAGTGGAAC
66 CGACAAATCTTACTTCTGGAAGTGCAGTGGAAC
* * *
77099013 GGATTGAAGCTACGACGGTGAATCTTGATTCCCTGACATTGCAATTTAAAATATTGAAGCCACAA
1 AGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGACATTGCAATTTAAAATATTGAAGCCACAA
* * **
77099078 TGGCAAATCTTACTTCCCTGGCGGTGCAGTGGAAC
66 CGACAAATCTTACTT--CTGGAAGTGCAGTGGAAC
** * *
77099113 AGATTGAAGCTATAAAGGCGAATCTTGTTTCCCCGACATTGCAATTTAAAATATTGAA
1 AGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGACATTGCAATTTAAAATATTGAA
77099171 ACTACTAATC
Statistics
Matches: 131, Mismatches: 23, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
96 64 0.49
97 1 0.01
100 66 0.50
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (98 bp):
AGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGACATTGCAATTTAAAATATTGAAGCCACAA
CGACAAATCTTACTTCTGGAAGTGCAGTGGAAC
Found at i:77099072 original size:50 final size:50
Alignment explanation
Indices: 77099015--77099175 Score: 144
Period size: 50 Copynumber: 3.2 Consensus size: 50
77099005 AGTGGAACGG
* * *
77099015 ATTGAAGCTACGACGGTGAATCTTGATTCCCTGACATTGCAATTTAAAAT
1 ATTGAAGCTACAAAGGCGAATCTTGATTCCCTGACATTGCAATTTAAAAT
* * * * ** * ** * *
77099065 ATTGAAGCCACAATGGCAAATCTT-ACTTCCCTGGCGGTGCAGTGGAACAG
1 ATTGAAGCTACAAAGGCGAATCTTGA-TTCCCTGACATTGCAATTTAAAAT
* * *
77099115 ATTGAAGCTATAAAGGCGAATCTTGTTTCCCCGACATTGCAATTTAAAAT
1 ATTGAAGCTACAAAGGCGAATCTTGATTCCCTGACATTGCAATTTAAAAT
*
77099165 ATTGAAACTAC
1 ATTGAAGCTAC
77099176 TAATCCTATC
Statistics
Matches: 80, Mismatches: 29, Indels: 4
0.71 0.26 0.04
Matches are distributed among these distances:
49 1 0.01
50 79 0.99
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (50 bp):
ATTGAAGCTACAAAGGCGAATCTTGATTCCCTGACATTGCAATTTAAAAT
Found at i:77099145 original size:100 final size:100
Alignment explanation
Indices: 77098891--77099170 Score: 325
Period size: 96 Copynumber: 2.8 Consensus size: 100
77098881 ACGGTGAATT
* * * * * * *
77098891 TTACTTCCCTGGCGGTGTAGTGAAATAGATTAAAGCTACGACTGCGAATATTGTTTCTCTGACAT
1 TTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGACAT
* * * * *
77098956 TACAATTAAAAAGATTGAAGCCGCAACGACGAATC
66 TGCAATTTAAAATATTGAAGCCACAACGACAAATC
** * * *
77098991 TTAC-T---TGGAAGTGCAGTGGAACGGATTGAAGCTACGACGGTGAATCTTGATTCCCTGACAT
1 TTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGACAT
* *
77099052 TGCAATTTAAAATATTGAAGCCACAATGGCAAATC
66 TGCAATTTAAAATATTGAAGCCACAACGACAAATC
** * *
77099087 TTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTATAAAGGCGAATCTTGTTTCCCCGACAT
1 TTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGACAT
77099152 TGCAATTTAAAATATTGAA
66 TGCAATTTAAAATATTGAA
77099171 ACTACTAATC
Statistics
Matches: 148, Mismatches: 28, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
96 76 0.51
97 1 0.01
99 1 0.01
100 70 0.47
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (100 bp):
TTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGACAT
TGCAATTTAAAATATTGAAGCCACAACGACAAATC
Found at i:77099598 original size:128 final size:128
Alignment explanation
Indices: 77099177--77099811 Score: 986
Period size: 128 Copynumber: 5.0 Consensus size: 128
77099167 TGAAACTACT
** * *
77099177 AATCCTATCTGTCTGAAGTTGCAGTGGAGCGGATTAAAATCACAAATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTG
* *** **
77099242 CAGTAGAGTAGATTGCATCAATTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACC
66 CAGTAGAGCAGATCATATCAAACCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACC
* *
77099305 AATCCTATCTCTCTGAAGTTGCAGTAGAGCGGATTAAAACCACAGATCTTATC-CATCTGAAGTT
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTC-TCTGAAGTT
* ** ** *
77099369 GCAGTTGAGCAGATCGCATCAAGTCTTATCTCCCT-AGTAGTAGTGGAGCAGACAAAAGAAACC
65 GCAGTAGAGCAGATCATATCAAACCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACC
* *
77099432 AATCCTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAACTACAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTG
*
77099497 CAGTAGAGCAGATCATATCAAACCTTATCTCCCTAAGCAGTGGTGGAGCAGACAAAAGAAACC
66 CAGTAGAGCAGATCATATCAAACCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACC
*
77099560 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCATAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTG
*
77099625 CAGTAGAGCAGATCATATCAAACCTTATCTCCCTAAGCAGTGGTGGAGCAGACAAAAGAAACC
66 CAGTAGAGCAGATCATATCAAACCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACC
*
77099688 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCATAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTG
* ** *
77099753 CAGTAGAGCAGATCATATCAAACCTTATATCCCTGAAGTTGTAGTGGAGCAGACTAAAG
66 CAGTAGAGCAGATCATATCAAACCTTATCTCCCT-AAGCAGTAGTGGAGCAGACAAAAG
77099812 CCACAAATCT
Statistics
Matches: 475, Mismatches: 28, Indels: 7
0.93 0.05 0.01
Matches are distributed among these distances:
127 116 0.24
128 339 0.71
129 20 0.04
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.26
Consensus pattern (128 bp):
AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTG
CAGTAGAGCAGATCATATCAAACCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACC
Found at i:77099628 original size:255 final size:256
Alignment explanation
Indices: 77099177--77099811 Score: 972
Period size: 255 Copynumber: 2.5 Consensus size: 256
77099167 TGAAACTACT
* *
77099177 AATCCTATCT-GTCTGAAGTTGCAGTGGAGCGGATTAAAA-TCACAAATCTTATCTCTCTGAAGT
1 AATCCTATCTCCT-TGAAGTTGCAGTGGAGCGGATTAAAACT-ACAGATCTTATCTCTCTGAAGT
* *** **
77099240 TGCAGTAGAGTAGATTGCATCAATTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACC
64 TGCAGTAGAGCAGATCATATCAAACCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACC
*
77099305 AATCCTATCTCTCTGAAGTTGCAGTAGAGCGGATTAAAACCACAGATCTTATCCATCTGAAGTTG
129 AATCCTATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAACCACAGATCTTATCCATCTGAAGTTG
* * ** *
77099370 CAGTTGAGCAGATCGCATCAAGTCTTATCTCCCT-AGTAGTAGTGGAGCAGACAAAAGAAACC
194 CAGTAGAGCAGATCACATCAAACCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACC
77099432 AATCCTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAACTACAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAACTACAGATCTTATCTCTCTGAAGTTG
*
77099497 CAGTAGAGCAGATCATATCAAACCTTATCTCCCTAAGCAGTGGTGGAGCAGACAAAAGAAACCAA
66 CAGTAGAGCAGATCATATCAAACCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAA
* *
77099562 TCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCATAGATCTTATCTC-TCTGAAGTTGC
131 TCCTATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAACCACAGATCTTATC-CATCTGAAGTTGC
* *
77099626 AGTAGAGCAGATCATATCAAACCTTATCTCCCTAAGCAGTGGTGGAGCAGACAAAAGAAACC
195 AGTAGAGCAGATCACATCAAACCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACC
* * *
77099688 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCATAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAACTACAGATCTTATCTCTCTGAAGTTG
* ** *
77099753 CAGTAGAGCAGATCATATCAAACCTTATATCCCTGAAGTTGTAGTGGAGCAGACTAAAG
66 CAGTAGAGCAGATCATATCAAACCTTATCTCCCT-AAGCAGTAGTGGAGCAGACAAAAG
77099812 CCACAAATCT
Statistics
Matches: 348, Mismatches: 27, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
255 204 0.59
256 124 0.36
257 20 0.06
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.26
Consensus pattern (256 bp):
AATCCTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAACTACAGATCTTATCTCTCTGAAGTTG
CAGTAGAGCAGATCATATCAAACCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAA
TCCTATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAACCACAGATCTTATCCATCTGAAGTTGCA
GTAGAGCAGATCACATCAAACCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACC
Found at i:77099687 original size:39 final size:41
Alignment explanation
Indices: 77099265--77099805 Score: 166
Period size: 44 Copynumber: 12.7 Consensus size: 41
77099255 TGCATCAATT
* *
77099265 CTTATCTCCCT-AAGCAGTAGTGGAGCAGA-CAAAAGAAAC
1 CTTATCTCCCTGAAGCAGCAGTGGAGCAGATCAAAACAAAC
* ** * * * *
77099304 CAATCCTATCTCTCTGAAGTTGCAGTAGAGCGGATTAAAACCACAGAT
1 C--T--TATCTCCCTGAAGCAGCAGTGGAGCAGATCAAAA-CA-A-AC
* ** * ** * **
77099352 CTTATC-CATCTGAAGTTGCAGTTGAGCAGATCGCATCAAGT
1 CTTATCTC-CCTGAAGCAGCAGTGGAGCAGATCAAAACAAAC
* * *
77099393 CTTATCTCCCT--AGTAGTAGTGGAGCAGA-CAAAAGAAAC
1 CTTATCTCCCTGAAGCAGCAGTGGAGCAGATCAAAACAAAC
* ** * * *
77099431 CAATCCTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAACTACAGAT
1 C--T--TATCTCCCTGAAGCAGCAGTGGAGCAGATCAAAAC-A-A-AC
* ** * * *
77099479 CTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCAAAC
1 CTTATCTCCCTGAAGCAGCAGTGGAGCAGATCAAAACAAAC
** *
77099520 CTTATCTCCCT-AAGCAGTGGTGGAGCAGA-CAAAAGAAAC
1 CTTATCTCCCTGAAGCAGCAGTGGAGCAGATCAAAACAAAC
** * * *
77099559 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCATAGAT
1 C--T--TATCTCCCTGAAGCAGCAGTGGAGCAGATCAAAA-CA-A-AC
* ** * * *
77099607 CTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCAAAC
1 CTTATCTCCCTGAAGCAGCAGTGGAGCAGATCAAAACAAAC
** *
77099648 CTTATCTCCCT-AAGCAGTGGTGGAGCAGA-CAAAAGAAAC
1 CTTATCTCCCTGAAGCAGCAGTGGAGCAGATCAAAACAAAC
** * * *
77099687 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCATAGAT
1 C--T--TATCTCCCTGAAGCAGCAGTGGAGCAGATCAAAA-CA-A-AC
* ** * * *
77099735 CTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCAAAC
1 CTTATCTCCCTGAAGCAGCAGTGGAGCAGATCAAAACAAAC
* ** *
77099776 CTTATATCCCTGAAGTTGTAGTGGAGCAGA
1 CTTATCTCCCTGAAGCAGCAGTGGAGCAGA
77099806 CTAAAGCCAC
Statistics
Matches: 370, Mismatches: 93, Indels: 76
0.69 0.17 0.14
Matches are distributed among these distances:
38 5 0.01
39 31 0.08
40 27 0.07
41 61 0.16
42 13 0.04
43 34 0.09
44 163 0.44
45 16 0.04
46 8 0.02
47 4 0.01
48 8 0.02
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.25
Consensus pattern (41 bp):
CTTATCTCCCTGAAGCAGCAGTGGAGCAGATCAAAACAAAC
Found at i:77103739 original size:18 final size:20
Alignment explanation
Indices: 77103697--77103741 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 20
77103687 GCTACAAATG
*
77103697 TAATTTACCTAATATAAAAA
1 TAATTTACCTAATACAAAAA
*
77103717 CAATTTACCT-A-ACAAAAA
1 TAATTTACCTAATACAAAAA
77103735 TAATTTA
1 TAATTTA
77103742 AAAAATTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 12 0.55
19 1 0.05
20 9 0.41
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (20 bp):
TAATTTACCTAATACAAAAA
Found at i:77111233 original size:19 final size:19
Alignment explanation
Indices: 77111209--77111302 Score: 152
Period size: 19 Copynumber: 4.8 Consensus size: 19
77111199 AATTTTTGAG
77111209 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
77111228 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
77111247 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
**
77111268 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
77111287 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
77111303 ATATATGATT
Statistics
Matches: 69, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
19 50 0.72
21 19 0.28
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:77111254 original size:40 final size:38
Alignment explanation
Indices: 77111209--77111309 Score: 152
Period size: 40 Copynumber: 2.7 Consensus size: 38
77111199 AATTTTTGAG
77111209 GATATGCAATCTTAGATATGATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCTTAGATAT
**
77111247 GATATATGCAATCTTAGATATGATATATAATCTTAGATAT
1 G--ATATGCAATCTTAGATATGATATGCAATCTTAGATAT
77111287 GATATGCAATCTTAGA-AT-ATATG
1 GATATGCAATCTTAGATATGATATG
77111310 ATTTTGTAAT
Statistics
Matches: 58, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
36 4 0.07
37 2 0.03
38 16 0.28
40 36 0.62
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.38
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGCAATCTTAGATAT
Found at i:77111916 original size:25 final size:25
Alignment explanation
Indices: 77111865--77111916 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
77111855 AATTTTGTTA
*
77111865 ATGTAATTATTATTATTATTATCAT
1 ATGTAATTATTATTATTATTAGCAT
77111890 ATGTAATTATTATTATT-TTAGCTAT
1 ATGTAATTATTATTATTATTAGC-AT
77111915 AT
1 AT
77111917 ATATATGTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 4 0.16
25 21 0.84
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.56
Consensus pattern (25 bp):
ATGTAATTATTATTATTATTAGCAT
Found at i:77112037 original size:30 final size:31
Alignment explanation
Indices: 77111982--77112041 Score: 88
Period size: 30 Copynumber: 1.9 Consensus size: 31
77111972 TTTTCGCATA
77111982 TTTATTTTTTTATATGAGGTAATTATTTTTAT
1 TTTATTTTTTTATATGA-GTAATTATTTTTAT
77112014 TTTATTTTATTTATAT-A-TAATTATTTTT
1 TTTATTTT-TTTATATGAGTAATTATTTTT
77112042 TTATAATCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
30 11 0.41
32 9 0.33
33 7 0.26
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (31 bp):
TTTATTTTTTTATATGAGTAATTATTTTTAT
Found at i:77112515 original size:19 final size:20
Alignment explanation
Indices: 77112476--77112515 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
77112466 TTCTAGGCCT
* *
77112476 TTGTAATATTTATTATTGCA
1 TTGTAATATTTAATATAGCA
77112496 TTGT-ATATTTAATATAGCA
1 TTGTAATATTTAATATAGCA
77112515 T
1 T
77112516 CACATCATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.53
Consensus pattern (20 bp):
TTGTAATATTTAATATAGCA
Found at i:77112876 original size:98 final size:98
Alignment explanation
Indices: 77112756--77112952 Score: 367
Period size: 98 Copynumber: 2.0 Consensus size: 98
77112746 CTAAAAACAA
* *
77112756 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
77112821 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
*
77112854 TAAAGGAAATATTCCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
77112919 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
77112952 T
1 T
77112953 TTTATTGTAC
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 96 1.00
ACGTcount: A:0.28, C:0.10, G:0.25, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:77118291 original size:132 final size:132
Alignment explanation
Indices: 77117827--77118739 Score: 1262
Period size: 132 Copynumber: 6.9 Consensus size: 132
77117817 TTGACAGCGA
* * *
77117827 AGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAATAAT
* ** ** * *
77117892 TCTACTTCCCTGGGGCAACAGTGGAATAGATTAAAGATAGCAGATCTTGCCT-TCT-TGCATTGA
66 TCTACTTCCCT-GGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA--G-
* *
77117955 TAGCGA
127 TAGTGG
*
77117961 AGCAGATCGAAGATGACGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAATAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAATAAT
** * ** * ** * *
77118026 TCTACTTCCCTGGGCAGTAGTGGAATAGATTAAAGATAGCAAATCTTGCCTTCCT--GCATTGAC
66 TCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA--G-T
* *
77118089 AGCGA
128 AGTGG
* *
77118094 AGCAGATAGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCATTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAATAAT
* * *
77118159 TTTACTTCCCTGGGCAGCAGTGGAATAGATTAAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
77118224 GG
131 GG
* *
77118226 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAATAAT
77118291 TCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
77118356 GG
131 GG
77118358 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAATAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAATAAT
* *
77118423 TCTACTTTCCTGAGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
77118488 GG
131 GG
77118490 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAATAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAATAAT
* *
77118555 TCTACTTTCCTGAGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
77118620 GG
131 GG
* * * * * * * *
77118622 AGTAGATCAAAGATGGTGGACTTTACCTCCCTGTGGTTACAGTAGAGTACATTGAAGTCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAATAAT
* * * * *
77118687 CCTA-TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAG-TCTTATCTCC
66 TCTACT-TCCCTGGGCAACAGTGGAATAGATTGAAGATT-TCAGATCTTATCTCC
77118740 TTGCAGTTGC
Statistics
Matches: 726, Mismatches: 48, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
131 1 0.00
132 486 0.67
133 162 0.22
134 74 0.10
135 3 0.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (132 bp):
AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAATAAT
TCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
GG
Found at i:77118628 original size:44 final size:44
Alignment explanation
Indices: 77118172--77118628 Score: 147
Period size: 44 Copynumber: 10.4 Consensus size: 44
77118162 ACTTCCCTGG
* * * *
77118172 GCAGCAGTGGAATAGATTAAAGATTTCAGATCTTATCTCCCTAA
1 GCAGTAGTGGAGTAGATTGAAGATGTCAGATCTTATCTCCCTAA
* * * * * * **
77118216 GCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTG
1 GCAGTAGTGGAGTAGATTGAAGATGTCAGATCTTATCTCCCT-AA
* * * **
77118261 GTTA-TAGTGGAGTACATTGAAGCTAGT-A-AT-TCTA-CTTCCCTGG
1 G-CAGTAGTGGAGTAGATTGAAGAT-GTCAGATCT-TATC-TCCCTAA
** * *
77118304 GCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAA
1 GCAGTAGTGGAGTAGATTGAAGATGTCAGATCTTATCTCCCTAA
* * * * * * **
77118348 GCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTG
1 GCAGTAGTGGAGTAGATTGAAGATGTCAGATCTTATCTCCCT-AA
* * * * *
77118393 GTTA-TAGTGGAGTACATTGAAGCCA-AT-A-AT-TCTA-CTTTCCTGA
1 G-CAGTAGTGGAGTAGATTGAAG--ATGTCAGATCT-TATC-TCCCTAA
** * *
77118436 GCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAA
1 GCAGTAGTGGAGTAGATTGAAGATGTCAGATCTTATCTCCCTAA
* * * * * * **
77118480 GCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTG
1 GCAGTAGTGGAGTAGATTGAAGATGTCAGATCTTATCTCCCT-AA
* * * * *
77118525 GTTA-TAGTGGAGTACATTGAAGCCA-AT-A-AT-TCTA-CTTTCCTGA
1 G-CAGTAGTGGAGTAGATTGAAG--ATGTCAGATCT-TATC-TCCCTAA
** * *
77118568 GCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAA
1 GCAGTAGTGGAGTAGATTGAAGATGTCAGATCTTATCTCCCTAA
77118612 GCAGTAGTGGAGTAGAT
1 GCAGTAGTGGAGTAGAT
77118629 CAAAGATGGT
Statistics
Matches: 290, Mismatches: 89, Indels: 68
0.65 0.20 0.15
Matches are distributed among these distances:
41 2 0.01
42 6 0.02
43 59 0.20
44 162 0.56
45 55 0.19
46 4 0.01
47 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (44 bp):
GCAGTAGTGGAGTAGATTGAAGATGTCAGATCTTATCTCCCTAA
Found at i:77118994 original size:19 final size:19
Alignment explanation
Indices: 77118970--77119090 Score: 158
Period size: 19 Copynumber: 6.4 Consensus size: 19
77118960 AATTTTTGAG
77118970 GATATGAAATCTTAGATAT
1 GATATGAAATCTTAGATAT
* *
77118989 GATATGCAATCCTAGATAT
1 GATATGAAATCTTAGATAT
*
77119008 GATATGCAATCTTAGATAT
1 GATATGAAATCTTAGATAT
77119027 GATATATGAAATCTTAGATAT
1 G--ATATGAAATCTTAGATAT
77119048 GATAT-ATAATCTTAGATAT
1 GATATGA-AATCTTAGATAT
*
77119067 GATATGCAATCTTAGA-AT
1 GATATGAAATCTTAGATAT
77119085 -ATATGA
1 GATATGA
77119091 TTTTGTAATC
Statistics
Matches: 92, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
17 5 0.05
18 3 0.03
19 66 0.72
21 18 0.20
ACGTcount: A:0.40, C:0.08, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGAAATCTTAGATAT
Found at i:77119012 original size:38 final size:38
Alignment explanation
Indices: 77118970--77119090 Score: 167
Period size: 40 Copynumber: 3.2 Consensus size: 38
77118960 AATTTTTGAG
*
77118970 GATATGAAATCTTAGATATGATATGCAATCCTAGATAT
1 GATATGAAATCTTAGATATGATATGCAATCTTAGATAT
* *
77119008 GATATGCAATCTTAGATATGATATATGAAATCTTAGATAT
1 GATATGAAATCTTAGATATG--ATATGCAATCTTAGATAT
77119048 GATAT-ATAATCTTAGATATGATATGCAATCTTAGA-AT
1 GATATGA-AATCTTAGATATGATATGCAATCTTAGATAT
77119085 -ATATGA
1 GATATGA
77119091 TTTTGTAATC
Statistics
Matches: 74, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
36 4 0.05
37 3 0.04
38 33 0.45
40 34 0.46
ACGTcount: A:0.40, C:0.08, G:0.15, T:0.36
Consensus pattern (38 bp):
GATATGAAATCTTAGATATGATATGCAATCTTAGATAT
Found at i:77119037 original size:59 final size:59
Alignment explanation
Indices: 77118971--77119082 Score: 197
Period size: 59 Copynumber: 1.9 Consensus size: 59
77118961 ATTTTTGAGG
*
77118971 ATATGAAATCTTAGATATGATATGCAATCCTAGATATGATATGCAATCTTAGATATGAT
1 ATATGAAATCTTAGATATGATATACAATCCTAGATATGATATGCAATCTTAGATATGAT
* *
77119030 ATATGAAATCTTAGATATGATATATAATCTTAGATATGATATGCAATCTTAGA
1 ATATGAAATCTTAGATATGATATACAATCCTAGATATGATATGCAATCTTAGA
77119083 ATATATGATT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
59 50 1.00
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.37
Consensus pattern (59 bp):
ATATGAAATCTTAGATATGATATACAATCCTAGATATGATATGCAATCTTAGATATGAT
Found at i:77120118 original size:98 final size:98
Alignment explanation
Indices: 77119949--77120143 Score: 354
Period size: 98 Copynumber: 2.0 Consensus size: 98
77119939 NNNNNNNNAA
* * *
77119949 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTACTGGGTGTGATTTC
77120014 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
*
77120047 TAAAGGAAATATTCCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTACTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTACTGGGTGTGATTTC
77120112 TTAAATCTTGGATAAGTGGATGTTCTTTTAAA
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAA
77120144 ATTTTATTGT
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.36
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTACTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:77126129 original size:73 final size:76
Alignment explanation
Indices: 77126025--77126175 Score: 182
Period size: 73 Copynumber: 2.0 Consensus size: 76
77126015 TACTCATCCT
* *
77126025 TTTATCATTCTTTTACTTTTAAAATATTTAAATCTAATATTATGAACATTTACTTTATCTA-T-T
1 TTTATCATTCTTTTACTTTTAAAATACTTAAATCTAAAATTATGAACATTTACTTTATCTATTAT
77126088 T-ACTTATTTA
66 TCACTTATTTA
* * * * * ** **
77126098 TTTATTATTCTTTTACTTTTCAAATGCTTAAATTTAAAATTGTTTACATTTGTTTTATCTATTAT
1 TTTATCATTCTTTTACTTTTAAAATACTTAAATCTAAAATTATGAACATTTACTTTATCTATTAT
77126163 TCACTTATTTA
66 TCACTTATTTA
77126174 TT
1 TT
77126176 CTTTTACTTC
Statistics
Matches: 64, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
73 50 0.78
74 1 0.02
75 2 0.03
76 11 0.17
ACGTcount: A:0.30, C:0.11, G:0.03, T:0.57
Consensus pattern (76 bp):
TTTATCATTCTTTTACTTTTAAAATACTTAAATCTAAAATTATGAACATTTACTTTATCTATTAT
TCACTTATTTA
Found at i:77126407 original size:3 final size:3
Alignment explanation
Indices: 77126399--77126430 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
77126389 TAAATTGATT
77126399 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
77126431 GCGATAGTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:77126970 original size:20 final size:20
Alignment explanation
Indices: 77126945--77126989 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
77126935 TTAACTCAAA
*
77126945 AATAAAGTTATTTTTGTGTT
1 AATAAAGTTATTTTCGTGTT
77126965 AATAAAGTTATTTTCGTGTT
1 AATAAAGTTATTTTCGTGTT
77126985 AATAA
1 AATAA
77126990 TGTTTTAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.36, C:0.02, G:0.13, T:0.49
Consensus pattern (20 bp):
AATAAAGTTATTTTCGTGTT
Found at i:77132217 original size:35 final size:35
Alignment explanation
Indices: 77132178--77132248 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
77132168 CTTGTTGAAG
77132178 ATATGCTAACAACAAAAAAACAAGAAAACAAAGGT
1 ATATGCTAACAACAAAAAAACAAGAAAACAAAGGT
77132213 ATATGCTAACAACAAAAAAACAAGAAAACAAAGGT
1 ATATGCTAACAACAAAAAAACAAGAAAACAAAGGT
77132248 A
1 A
77132249 GATTCTTTCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.63, C:0.14, G:0.11, T:0.11
Consensus pattern (35 bp):
ATATGCTAACAACAAAAAAACAAGAAAACAAAGGT
Found at i:77137963 original size:101 final size:101
Alignment explanation
Indices: 77137786--77137971 Score: 363
Period size: 101 Copynumber: 1.8 Consensus size: 101
77137776 CCTCTTTTGC
77137786 TAAATTCTACCATGCCATTCTCACTCATATGGCCTAGGCGCATATGCCAAAGTTTAGTAATATCA
1 TAAATTCTACCATGCCATTCTCACTCATATGGCCTAGGCGCATATGCCAAAGTTTAGTAATATCA
77137851 TCATCTAACAAGGAAGAGGAAGCGACAGCTGCATCA
66 TCATCTAACAAGGAAGAGGAAGCGACAGCTGCATCA
77137887 TAAATTCTACCATGCCATTCTCACTCATATGGCCTAGGCGCATATGCCAAAGTTTAGTAATATCA
1 TAAATTCTACCATGCCATTCTCACTCATATGGCCTAGGCGCATATGCCAAAGTTTAGTAATATCA
*
77137952 TCATCTGACAAGGAAGAGGA
66 TCATCTAACAAGGAAGAGGA
77137972 TGACACAGCT
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 84 1.00
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (101 bp):
TAAATTCTACCATGCCATTCTCACTCATATGGCCTAGGCGCATATGCCAAAGTTTAGTAATATCA
TCATCTAACAAGGAAGAGGAAGCGACAGCTGCATCA
Found at i:77141545 original size:18 final size:18
Alignment explanation
Indices: 77141522--77141557 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
77141512 AAATCAGCAT
77141522 CAACATAGCTAATGACTC
1 CAACATAGCTAATGACTC
77141540 CAACATAGCTAATGACTC
1 CAACATAGCTAATGACTC
77141558 TATCTCTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.28, G:0.11, T:0.22
Consensus pattern (18 bp):
CAACATAGCTAATGACTC
Found at i:77142473 original size:25 final size:27
Alignment explanation
Indices: 77142418--77142473 Score: 75
Period size: 25 Copynumber: 2.2 Consensus size: 27
77142408 CAAATTATGG
77142418 CTTCAAACACAAACATACATTTATATA
1 CTTCAAACACAAACATACATTTATATA
77142445 -TTCAAAC-C-AACATTACATTTATA-A
1 CTTCAAACACAAACA-TACATTTATATA
77142469 CTTCA
1 CTTCA
77142474 TTTACAATCC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
24 5 0.19
25 15 0.56
26 7 0.26
ACGTcount: A:0.45, C:0.23, G:0.00, T:0.32
Consensus pattern (27 bp):
CTTCAAACACAAACATACATTTATATA
Found at i:77157611 original size:20 final size:20
Alignment explanation
Indices: 77157586--77157626 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
77157576 AAGACAACAT
77157586 CTTA-TTTTGCATTTTATTTA
1 CTTATTTTTGC-TTTTATTTA
*
77157606 CTTATTTTTTCTTTTATTTA
1 CTTATTTTTGCTTTTATTTA
77157626 C
1 C
77157627 CAATTTACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.17, C:0.12, G:0.02, T:0.68
Consensus pattern (20 bp):
CTTATTTTTGCTTTTATTTA
Found at i:77162511 original size:15 final size:16
Alignment explanation
Indices: 77162482--77162511 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77162472 CAAACATGCT
77162482 TTAACACATTATCAAA
1 TTAACACATTATCAAA
77162498 TTAACACA-TATCAA
1 TTAACACATTATCAA
77162512 CAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:77168153 original size:15 final size:15
Alignment explanation
Indices: 77168133--77168164 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
77168123 CTTAACTTAG
77168133 TTTTCTACTTTTAAT
1 TTTTCTACTTTTAAT
77168148 TTTTCTACTTTTAAT
1 TTTTCTACTTTTAAT
77168163 TT
1 TT
77168165 CAATTTAGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.19, C:0.12, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTTCTACTTTTAAT
Found at i:77172814 original size:16 final size:16
Alignment explanation
Indices: 77172784--77172813 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
77172774 AATGTTGGCA
77172784 ATGTAAAATAATTTTC
1 ATGTAAAATAATTTTC
77172800 ATGT-AAATAATTTT
1 ATGTAAAATAATTTT
77172814 TGTAATGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.47
Consensus pattern (16 bp):
ATGTAAAATAATTTTC
Found at i:77173190 original size:12 final size:12
Alignment explanation
Indices: 77173173--77173198 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
77173163 CAAAACAAGC
77173173 TTTTAGCGGCGT
1 TTTTAGCGGCGT
77173185 TTTTAGCGGCGT
1 TTTTAGCGGCGT
77173197 TT
1 TT
77173199 AGATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:77173232 original size:41 final size:38
Alignment explanation
Indices: 77173187--77173278 Score: 96
Period size: 40 Copynumber: 2.3 Consensus size: 38
77173177 AGCGGCGTTT
* *
77173187 TTAGCGGCGTTTAGATAAAAAACGCCGCT-AAATATCGATCA
1 TTAGCGGCGTTT--ATAAAAAACGCCGCTGAAA-AT-AAGCA
**
77173228 TTAGCGGCGCTTTATGGAAAACGCCGCTGAAAATAAGCA
1 TTAGCGGCG-TTTATAAAAAACGCCGCTGAAAATAAGCA
77173267 TTAGCGGCGTTT
1 TTAGCGGCGTTT
77173279 TCCAAAAAGC
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
38 3 0.07
39 12 0.27
40 15 0.33
41 12 0.27
42 3 0.07
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.25
Consensus pattern (38 bp):
TTAGCGGCGTTTATAAAAAACGCCGCTGAAAATAAGCA
Found at i:77173404 original size:73 final size:72
Alignment explanation
Indices: 77173267--77173438 Score: 211
Period size: 73 Copynumber: 2.4 Consensus size: 72
77173257 AAAATAAGCA
* * * **
77173267 TTAGCGGCGTTTTCCAA-AAAGCGCCGCAAAAAACCTAAGCCCAACGACGTTGTTTTCAGAGCTT
1 TTAGCGGCATTTT-TAAGAAAGCGCCGCAAAAAACATAAGCCCAACGACGCCGTTTTCAGAGCTT
77173331 TTGGGGAT
65 TTGGGGAT
* * * * ** *
77173339 TTAGCTGCGTTTTTGAGAAAGCGCCGCAAAAAAACATAAGCCCAACGATGCCGTTTTGTGGGCTT
1 TTAGCGGCATTTTTAAGAAAGCGCCGC-AAAAAACATAAGCCCAACGACGCCGTTTTCAGAGCTT
77173404 TTGGGGAT
65 TTGGGGAT
77173412 TTAGCGGCATTTTTAAGAAAGCGCCGC
1 TTAGCGGCATTTTTAAGAAAGCGCCGC
77173439 TAATGGTCAG
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
71 1 0.01
72 22 0.26
73 62 0.73
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (72 bp):
TTAGCGGCATTTTTAAGAAAGCGCCGCAAAAAACATAAGCCCAACGACGCCGTTTTCAGAGCTTT
TGGGGAT
Found at i:77173540 original size:98 final size:98
Alignment explanation
Indices: 77173366--77173560 Score: 318
Period size: 98 Copynumber: 2.0 Consensus size: 98
77173356 AAAGCGCCGC
* *
77173366 AAAAAAACATAAGCCCAACGATGCCGTTTTGTGGGCTTTTGGGGATTTAGCGGCATTTTTAAGAA
1 AAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTTGGGGATTTAACGGCATTTTTAAGAA
* * *
77173431 AGCGCCGCTAATGGTCAGGGATTTAACGGCGTA
66 AGCACCACTAATGCTCAGGGATTTAACGGCGTA
*
77173464 AAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTTGGGGATTTAACGGCGTTTTTAAGAA
1 AAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTTGGGGATTTAACGGCATTTTTAAGAA
* *
77173529 AGCACCACTAATGCTCAGGGCTTTAGCGGCGT
66 AGCACCACTAATGCTCAGGGATTTAACGGCGT
77173561 TTTTGAGAAA
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
98 89 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (98 bp):
AAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTTGGGGATTTAACGGCATTTTTAAGAA
AGCACCACTAATGCTCAGGGATTTAACGGCGTA
Found at i:77173666 original size:114 final size:114
Alignment explanation
Indices: 77173464--77173762 Score: 517
Period size: 114 Copynumber: 2.6 Consensus size: 114
77173454 TAACGGCGTA
*
77173464 AAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTTGGGGATTTAACGGCGTTTTTAAGAA
1 AAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTTGGGGATTTAGCGGCGTTTTTAAGAA
* *
77173529 AGCACCACTAATGCTCAGGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGC
66 AGCGCCACTAATGCTCAGGGCTTTAGCAGCGTTTTTGAGAAAGCGCCGC
*
77173578 AAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTTGGGGATTTAGCGGCGTTTTAAAGAA
1 AAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTTGGGGATTTAGCGGCGTTTTTAAGAA
* * *
77173643 AGCGCCACTAATGCTTAGTGCTTTAGCAGCGTTTTTGAGAAAGTGCCGC
66 AGCGCCACTAATGCTCAGGGCTTTAGCAGCGTTTTTGAGAAAGCGCCGC
* *
77173692 AAAAAAAAATAAGCCCAACGACGCTGTTTTGTGGGCTTTTGGGGATTTAGCGGCGTTTTTAAGAA
1 AAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTTGGGGATTTAGCGGCGTTTTTAAGAA
77173757 AGCGCC
66 AGCGCC
77173763 GCAAAAAAAC
Statistics
Matches: 175, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
114 175 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (114 bp):
AAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTTGGGGATTTAGCGGCGTTTTTAAGAA
AGCGCCACTAATGCTCAGGGCTTTAGCAGCGTTTTTGAGAAAGCGCCGC
Found at i:77173785 original size:73 final size:73
Alignment explanation
Indices: 77173664--77173837 Score: 267
Period size: 73 Copynumber: 2.4 Consensus size: 73
77173654 TGCTTAGTGC
* * * * * *
77173664 TTTAGCAGCGTTTTTGAGAAAGTGCCGCAAAAAAAAATAAGCCCAACGACGCTGTTTTGTGGGCT
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAAAATAAGCCAAACGACGCCGTTTTGTGAGCT
*
77173729 TTTGGGGA
66 TTCGGGGA
*
77173737 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCGTTTTGTGAGCT
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAAAATAAGCCAAACGACGCCGTTTTGTGAGCT
77173802 TTCGGGGA
66 TTCGGGGA
*
77173810 TTTAGCGGCGTTTTTAAGAAGGCGCCGC
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGC
77173838 TAATGCTTAG
Statistics
Matches: 92, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
73 92 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (73 bp):
TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAAAATAAGCCAAACGACGCCGTTTTGTGAGCT
TTCGGGGA
Found at i:77173867 original size:187 final size:187
Alignment explanation
Indices: 77173550--77174004 Score: 716
Period size: 187 Copynumber: 2.4 Consensus size: 187
77173540 TGCTCAGGGC
* * *
77173550 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCT
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCGTTTTGTGAGCT
* * *
77173615 TTTGGGGATTTAGCGGCGTTTTAAAGAAAGCGCCACTAATGCTTAGTGCTTTAGCAGCGTTTTTG
66 TTCGGGGATTTAGCGGCGTTTTAAAGAAAGCGCCACTAATGCTTAGGGCTTTAGCAGCATTTTTG
* * *
77173680 AGAAAGTGCCGCAAAAAAAAATAAGCCCAACGACG-CTGTTTTGTGGGCTTTTGGGGA
131 AGAAAGCGCCGCAAAAAAAAATAAGCCCAACGACGTC-GTTTTGTGAGCTTTCGGGGA
77173737 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCGTTTTGTGAGCT
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCGTTTTGTGAGCT
* * * * *
77173802 TTCGGGGATTTAGCGGCGTTTTTAAGAAGGCGCCGCTAATGCTTAGGGCTTTATCGGCATTTTTG
66 TTCGGGGATTTAGCGGCGTTTTAAAGAAAGCGCCACTAATGCTTAGGGCTTTAGCAGCATTTTTG
* ** *
77173867 AGTAAGCGCCGCAAAAAAACCTAATCCCAACGACGTCGTTTTGTGAGCTTTCGGGGA
131 AGAAAGCGCCGCAAAAAAAAATAAGCCCAACGACGTCGTTTTGTGAGCTTTCGGGGA
*
77173924 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAA-ATAAGCCAAACGACGCCATTTTGTGAGCT
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCGTTTTGTGAGCT
77173988 TTCGGGGATTTAGCGGC
66 TTCGGGGATTTAGCGGC
77174005 CAAAAAAATA
Statistics
Matches: 248, Mismatches: 19, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
186 45 0.18
187 202 0.81
188 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (187 bp):
TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCGTTTTGTGAGCT
TTCGGGGATTTAGCGGCGTTTTAAAGAAAGCGCCACTAATGCTTAGGGCTTTAGCAGCATTTTTG
AGAAAGCGCCGCAAAAAAAAATAAGCCCAACGACGTCGTTTTGTGAGCTTTCGGGGA
Found at i:77173886 original size:114 final size:114
Alignment explanation
Indices: 77173737--77173951 Score: 349
Period size: 114 Copynumber: 1.9 Consensus size: 114
77173727 CTTTTGGGGA
*
77173737 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCGTTTTGTGAGCT
1 TTTAGCGGCATTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCGTTTTGTGAGCT
*
77173802 TTCGGGGATTTAGCGGCGTTTTTAAGAAGGCGCCGCTAATGCTTAGGGC
66 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTTAGGGC
* * * * * * *
77173851 TTTATCGGCATTTTTGAGTAAGCGCCGCAAAAAAACCTAATCCCAACGACGTCGTTTTGTGAGCT
1 TTTAGCGGCATTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCGTTTTGTGAGCT
77173916 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGC
66 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGC
77173952 AAAAAAAATA
Statistics
Matches: 92, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
114 92 1.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (114 bp):
TTTAGCGGCATTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCGTTTTGTGAGCT
TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTTAGGGC
Found at i:77173984 original size:72 final size:73
Alignment explanation
Indices: 77173851--77174004 Score: 220
Period size: 72 Copynumber: 2.1 Consensus size: 73
77173841 TGCTTAGGGC
* * * * * * * *
77173851 TTTATCGGCATTTTTGAGTAAGCGCCGCAAAAAAACCTAATCCCAACGACGTCGTTTTGTGAGCT
1 TTTAGCGGCATTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCATTTTGTGAGCT
77173916 TTCGGGGA
66 TTCGGGGA
*
77173924 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAA-ATAAGCCAAACGACGCCATTTTGTGAGCT
1 TTTAGCGGCATTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCATTTTGTGAGCT
77173988 TTCGGGGA
66 TTCGGGGA
77173996 TTTAGCGGC
1 TTTAGCGGC
77174005 CAAAAAAATA
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
72 41 0.57
73 31 0.43
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.27
Consensus pattern (73 bp):
TTTAGCGGCATTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCATTTTGTGAGCT
TTCGGGGA
Found at i:77174196 original size:14 final size:14
Alignment explanation
Indices: 77174179--77174205 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
77174169 GGTTTAGAGT
77174179 TTATGGATTAGGGA
1 TTATGGATTAGGGA
77174193 TTATGGATTAGGG
1 TTATGGATTAGGG
77174206 GTTGGGATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.00, G:0.37, T:0.37
Consensus pattern (14 bp):
TTATGGATTAGGGA
Found at i:77174237 original size:15 final size:15
Alignment explanation
Indices: 77174217--77174247 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
77174207 TTGGGATTTA
77174217 AGGTTTAGGAGTTAG
1 AGGTTTAGGAGTTAG
*
77174232 AGGTTTAGGGGTTAG
1 AGGTTTAGGAGTTAG
77174247 A
1 A
77174248 CGTGCTGGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.42, T:0.32
Consensus pattern (15 bp):
AGGTTTAGGAGTTAG
Found at i:77174528 original size:15 final size:14
Alignment explanation
Indices: 77174504--77174550 Score: 60
Period size: 14 Copynumber: 3.3 Consensus size: 14
77174494 GTGTTGGGAT
77174504 TTAAGGTTTAGGGG
1 TTAAGGTTTAGGGG
77174518 TTAAGGGTTTAGGGG
1 TTAA-GGTTTAGGGG
*
77174533 TT-AGATGTTAGGGG
1 TTAAGGT-TTAGGGG
77174547 TTAA
1 TTAA
77174551 TTTTACTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
13 2 0.07
14 14 0.48
15 13 0.45
ACGTcount: A:0.23, C:0.00, G:0.40, T:0.36
Consensus pattern (14 bp):
TTAAGGTTTAGGGG
Found at i:77174847 original size:121 final size:126
Alignment explanation
Indices: 77174548--77174893 Score: 436
Period size: 121 Copynumber: 2.7 Consensus size: 126
77174538 TGTTAGGGGT
* * *
77174548 TAATTTTACTTTAAAAAAATAGCCCATTTTAGCATAGCATAGTAAAACGGCGTAGTTTTGTTCAA
1 TAATTTTACTTTAAAAAAATAGCCCCTTTTAGCATAGCATAGCAAAACGGCGTAGTTTTGTTTAA
* *
77174613 AATAAAAAATTTTTGCGGCGTTTTTATAAGCAATAGCGGCGTTTTTATAAAAAAAAACACCACAA
66 AATAAAAATTTTTTGCAGCGTTTTTAT-A-CAATAGCGGCGTTTTTAT----AAAAACACCACAA
77174678 AA
125 AA
*
77174680 TAATTTTACTTTAAAAAAATAGCCCCCTTTTAGCATAGCATAGCAAAACGGCGTCGTTTTGTTTA
1 TAATTTTACTTTAAAAAAATAG-CCCCTTTTAGCATAGCATAGCAAAACGGCGTAGTTTTGTTTA
* * * *
77174745 AAATGAAATTTTTTTGCAGCG-TTTT-T-CAATAGTGGCGTTTTT-T-AAAACGCCACAAAA
65 AAATAAAAATTTTTTGCAGCGTTTTTATACAATAGCGGCGTTTTTATAAAAACACCACAAAA
* * *
77174802 TAATTTTACTTT-AAAAAATAGACCCCTTTCAGCATAGTATAGCAAAACGGCGTAATTTTGTTTA
1 TAATTTTACTTTAAAAAAATAG-CCCCTTTTAGCATAGCATAGCAAAACGGCGTAGTTTTGTTTA
*
77174866 AAATAAAAATTTTTTAC-GACGTTTTTAT
65 AAATAAAAATTTTTTGCAG-CGTTTTTAT
77174894 GAAAAACGCC
Statistics
Matches: 192, Mismatches: 18, Indels: 17
0.85 0.08 0.07
Matches are distributed among these distances:
120 1 0.01
121 63 0.33
122 29 0.15
123 1 0.01
127 1 0.01
128 15 0.08
131 1 0.01
132 26 0.14
133 55 0.29
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.35
Consensus pattern (126 bp):
TAATTTTACTTTAAAAAAATAGCCCCTTTTAGCATAGCATAGCAAAACGGCGTAGTTTTGTTTAA
AATAAAAATTTTTTGCAGCGTTTTTATACAATAGCGGCGTTTTTATAAAAACACCACAAAA
Found at i:77178800 original size:43 final size:43
Alignment explanation
Indices: 77178717--77178800 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 43
77178707 TGAAAGAAGT
* * ** *
77178717 GTCGCTAAAGGTCATGTTCTTTAGCGGCATTTGTGGGAAAAGC
1 GTCGCTAAAGGTCATGGTCTTTAGCGGCACTTAAGAGAAAAGC
*
77178760 GTCGCTAAAGGTCTTGGTCTTTAGCGGCACTTAAGAGAAAA
1 GTCGCTAAAGGTCATGGTCTTTAGCGGCACTTAAGAGAAAA
77178801 ATGCCGCTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (43 bp):
GTCGCTAAAGGTCATGGTCTTTAGCGGCACTTAAGAGAAAAGC
Found at i:77178809 original size:43 final size:43
Alignment explanation
Indices: 77178719--77178826 Score: 108
Period size: 43 Copynumber: 2.5 Consensus size: 43
77178709 AAAGAAGTGT
* * ** * * *
77178719 CGCTAAAGGTCATGTTCTTTAGCGGCATTTGTGGGAAAAGCGT
1 CGCTAAAGGTCATGGTCTTTAGCGGCACTTAAGAGAAAAACGC
* *
77178762 CGCTAAAGGTCTTGGTCTTTAGCGGCACTTAAGAGAAAAATGC
1 CGCTAAAGGTCATGGTCTTTAGCGGCACTTAAGAGAAAAACGC
** *
77178805 CGCTAAAGAACATGATCTTTAG
1 CGCTAAAGGTCATGGTCTTTAG
77178827 TGGTGTTTTT
Statistics
Matches: 52, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (43 bp):
CGCTAAAGGTCATGGTCTTTAGCGGCACTTAAGAGAAAAACGC
Found at i:77183010 original size:7 final size:7
Alignment explanation
Indices: 77182998--77183022 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
77182988 TCTTGAACTC
77182998 AAACCTT
1 AAACCTT
77183005 AAACCTT
1 AAACCTT
77183012 AAACCTT
1 AAACCTT
77183019 AAAC
1 AAAC
77183023 TCCAAGGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (7 bp):
AAACCTT
Found at i:77189655 original size:21 final size:19
Alignment explanation
Indices: 77189606--77189661 Score: 85
Period size: 19 Copynumber: 2.8 Consensus size: 19
77189596 AATTTTCGAG
77189606 GATATACAATCTTAGATAT
1 GATATACAATCTTAGATAT
*
77189625 GATATGCAATCTTAGATAT
1 GATATACAATCTTAGATAT
77189644 GATATATACAATCTTAGA
1 G--ATATACAATCTTAGA
77189662 AGATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 19 0.58
21 14 0.42
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.36
Consensus pattern (19 bp):
GATATACAATCTTAGATAT
Found at i:77189885 original size:19 final size:21
Alignment explanation
Indices: 77189861--77189899 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
77189851 TACTATTTTC
*
77189861 TTTTTTTCTT-TTT-CGATTA
1 TTTTTTACTTATTTACGATTA
77189880 TTTTTTACTTATTTACGATT
1 TTTTTTACTTATTTACGATT
77189900 TTAAAAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTTACTTATTTACGATTA
Found at i:77190124 original size:3 final size:3
Alignment explanation
Indices: 77190116--77190158 Score: 61
Period size: 3 Copynumber: 14.3 Consensus size: 3
77190106 ATTAATTTTG
*
77190116 TTA TTA TTA TTT TTA TTA TTA -TA TTA TATA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA T
77190159 ACCTACATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 31 0.86
4 3 0.08
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:77190124 original size:15 final size:15
Alignment explanation
Indices: 77190100--77190157 Score: 55
Period size: 15 Copynumber: 3.7 Consensus size: 15
77190090 GTTTTTAGTC
77190100 TATT-TTATTAATTT
1 TATTATTATTAATTT
* *
77190114 TGTTATTATTATTTT
1 TATTATTATTAATTT
*
77190129 TATTATTATATTATATAT
1 TATTA-T-TATTA-ATTT
77190147 TATTATTATTA
1 TATTATTATTA
77190158 TACCTACATA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
14 3 0.09
15 13 0.37
16 6 0.17
17 6 0.17
18 7 0.20
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (15 bp):
TATTATTATTAATTT
Found at i:77192094 original size:9 final size:9
Alignment explanation
Indices: 77192075--77192112 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
77192065 TGAATTTTCG
*
77192075 AATTTGAAT
1 AATTCGAAT
*
77192084 AACTCGAAT
1 AATTCGAAT
77192093 AATTCGAAT
1 AATTCGAAT
77192102 AATTCGAAT
1 AATTCGAAT
77192111 AA
1 AA
77192113 AAACTATATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:77192175 original size:29 final size:29
Alignment explanation
Indices: 77192117--77192175 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
77192107 GAATAAAAAC
* *
77192117 TATATTTTTTATTTTTAAAATATACTACA
1 TATATTTTTTATTTTTAAAATACACGACA
77192146 TATATTTTTTATTTTTAAAATACACGACA
1 TATATTTTTTATTTTTAAAATACACGACA
77192175 T
1 T
77192176 TTAAAACAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.53
Consensus pattern (29 bp):
TATATTTTTTATTTTTAAAATACACGACA
Found at i:77193723 original size:237 final size:238
Alignment explanation
Indices: 77192995--77194080 Score: 2122
Period size: 237 Copynumber: 4.6 Consensus size: 238
77192985 AACCAACACA
77192995 TGTTGTTCTTTCTAATTTAGTTATTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAAC
1 TGTTGTTCTTTCTAATTTAGTTATTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAAC
77193060 AATTCAACCA-TTTTTATAAATGTAGTTTAACATACTTTTTTTTGTTTAATTTATGCTGCTGTAT
66 AATTCAACCATTTTTTATAAATGTAGTTTAACATACTTTTTTTTGTTTAATTTATGCTGCTGTAT
77193124 ATTATTTAATTTTTAATTTAATCGATTGAGGAGAAAAGAATGTCAATTATTTTTGTATGCACCAA
131 ATTATTTAATTTTTAATTTAATCGATTGAGGAGAAAAGAATGTCAATTATTTTTGTATGCACCAA
77193189 TCATCATCAAACTATAGCCATCATTTTGAAGCTGCAGATTTAT
196 TCATCATCAAACTATAGCCATCATTTTGAAGCTGCAGATTTAT
77193232 TGTTGTTCTTTCTAATTTAGTTATTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAAC
1 TGTTGTTCTTTCTAATTTAGTTATTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAAC
77193297 AATTCAACCATTTTTTATAAATGTAGTTTAACATACTTTTTTTTGTTTAATTTATGCTGCTGTAT
66 AATTCAACCATTTTTTATAAATGTAGTTTAACATACTTTTTTTTGTTTAATTTATGCTGCTGTAT
77193362 ATTATTTAATTTTTAATTTAATCGATTGAGGAGAAAAGAATGTCAATTATTTTTGTATGCACCAA
131 ATTATTTAATTTTTAATTTAATCGATTGAGGAGAAAAGAATGTCAATTATTTTTGTATGCACCAA
77193427 TCATCATCAAACTATAGCCATCATTTTGAAGCTGCAGATTTAT
196 TCATCATCAAACTATAGCCATCATTTTGAAGCTGCAGATTTAT
77193470 TGTTGTTCTTTCTAATTTAGTTATTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAAC
1 TGTTGTTCTTTCTAATTTAGTTATTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAAC
77193535 AATTCAACCA-TTTTTATAAATGTAGTTTAACATACTTTTTTTTGTTTAATTTATGCTGCTGTAT
66 AATTCAACCATTTTTTATAAATGTAGTTTAACATACTTTTTTTTGTTTAATTTATGCTGCTGTAT
77193599 ATTATTTAATTTTTAATTTAATCGATTGAGGAGAAAAGAATGTCAATTATTTTTGTATGCACCAA
131 ATTATTTAATTTTTAATTTAATCGATTGAGGAGAAAAGAATGTCAATTATTTTTGTATGCACCAA
77193664 TCATCATCAAACTATAGCCATCATTTTGAAGCTGCAGATTTAT
196 TCATCATCAAACTATAGCCATCATTTTGAAGCTGCAGATTTAT
77193707 TGTTGTTCTTTCTAATTTAGTTATTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAAC
1 TGTTGTTCTTTCTAATTTAGTTATTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAAC
*
77193772 AATTCAACCATTTTTTATAAATGTAGTTTAACATACTTTTTTTTTGTTTAATTTATGCTGCTATA
66 AATTCAACCATTTTTTATAAATGTAGTTTAACATAC-TTTTTTTTGTTTAATTTATGCTGCTGTA
*
77193837 TATTATTTAATTTTTAATTTAATCAATTGAGGAGAAAAGAATGTCAATTATTTTTGTATGCACCA
130 TATTATTTAATTTTTAATTTAATCGATTGAGGAGAAAAGAATGTCAATTATTTTTGTATGCACCA
77193902 ATCATCATCAAACTATAGCCATCATTTTGAAGCTGCAGATTTAT
195 ATCATCATCAAACTATAGCCATCATTTTGAAGCTGCAGATTTAT
77193946 TGTTGTTCTTTCTAATTTAGTTATTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAAC
1 TGTTGTTCTTTCTAATTTAGTTATTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAAC
*
77194011 AATTCAACCATTTTTTATAAATGTAGTTTAACATATTTTTTTTTGTTTAATTTATGCTGCTGTAT
66 AATTCAACCATTTTTTATAAATGTAGTTTAACATACTTTTTTTTGTTTAATTTATGCTGCTGTAT
77194076 ATTAT
131 ATTAT
77194081 AATGGTTTCT
Statistics
Matches: 842, Mismatches: 4, Indels: 5
0.99 0.00 0.01
Matches are distributed among these distances:
237 312 0.37
238 295 0.35
239 235 0.28
ACGTcount: A:0.35, C:0.11, G:0.09, T:0.46
Consensus pattern (238 bp):
TGTTGTTCTTTCTAATTTAGTTATTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAAC
AATTCAACCATTTTTTATAAATGTAGTTTAACATACTTTTTTTTGTTTAATTTATGCTGCTGTAT
ATTATTTAATTTTTAATTTAATCGATTGAGGAGAAAAGAATGTCAATTATTTTTGTATGCACCAA
TCATCATCAAACTATAGCCATCATTTTGAAGCTGCAGATTTAT
Found at i:77194052 original size:475 final size:474
Alignment explanation
Indices: 77192995--77194080 Score: 2109
Period size: 475 Copynumber: 2.3 Consensus size: 474
77192985 AACCAACACA
77192995 TGTTGTTCTTTCTAATTTAGTTATTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAAC
1 TGTTGTTCTTTCTAATTTAGTTATTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAAC
77193060 AATTCAACCATTTTTATAAATGTAGTTTAACATACTTTTTTTTGTTTAATTTATGCTGCTGTATA
66 AATTCAACCATTTTTATAAATGTAGTTTAACATA-TTTTTTTTGTTTAATTTATGCTGCTGTATA
77193125 TTATTTAATTTTTAATTTAATCGATTGAGGAGAAAAGAATGTCAATTATTTTTGTATGCACCAAT
130 TTATTTAATTTTTAATTTAATCGATTGAGGAGAAAAGAATGTCAATTATTTTTGTATGCACCAAT
77193190 CATCATCAAACTATAGCCATCATTTTGAAGCTGCAGATTTATTGTTGTTCTTTCTAATTTAGTTA
195 CATCATCAAACTATAGCCATCATTTTGAAGCTGCAGATTTATTGTTGTTCTTTCTAATTTAGTTA
77193255 TTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAACAATTCAACCATTTTTTATAAATG
260 TTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAACAATTCAACCATTTTTTATAAATG
*
77193320 TAGTTTAACATACTTTTTTTTGTTTAATTTATGCTGCTGTATATTATTTAATTTTTAATTTAATC
325 TAGTTTAACATACTTTTTTTTGTTTAATTTATGCTGCTATATATTATTTAATTTTTAATTTAATC
*
77193385 GATTGAGGAGAAAAGAATGTCAATTATTTTTGTATGCACCAATCATCATCAAACTATAGCCATCA
390 AATTGAGGAGAAAAGAATGTCAATTATTTTTGTATGCACCAATCATCATCAAACTATAGCCATCA
77193450 TTTTGAAGCTGCAGATTTAT
455 TTTTGAAGCTGCAGATTTAT
77193470 TGTTGTTCTTTCTAATTTAGTTATTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAAC
1 TGTTGTTCTTTCTAATTTAGTTATTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAAC
77193535 AATTCAACCATTTTTATAAATGTAGTTTAACATACTTTTTTTTGTTTAATTTATGCTGCTGTATA
66 AATTCAACCATTTTTATAAATGTAGTTTAACATA-TTTTTTTTGTTTAATTTATGCTGCTGTATA
77193600 TTATTTAATTTTTAATTTAATCGATTGAGGAGAAAAGAATGTCAATTATTTTTGTATGCACCAAT
130 TTATTTAATTTTTAATTTAATCGATTGAGGAGAAAAGAATGTCAATTATTTTTGTATGCACCAAT
77193665 CATCATCAAACTATAGCCATCATTTTGAAGCTGCAGATTTATTGTTGTTCTTTCTAATTTAGTTA
195 CATCATCAAACTATAGCCATCATTTTGAAGCTGCAGATTTATTGTTGTTCTTTCTAATTTAGTTA
77193730 TTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAACAATTCAACCATTTTTTATAAATG
260 TTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAACAATTCAACCATTTTTTATAAATG
77193795 TAGTTTAACATACTTTTTTTTTGTTTAATTTATGCTGCTATATATTATTTAATTTTTAATTTAAT
325 TAGTTTAACATAC-TTTTTTTTGTTTAATTTATGCTGCTATATATTATTTAATTTTTAATTTAAT
77193860 CAATTGAGGAGAAAAGAATGTCAATTATTTTTGTATGCACCAATCATCATCAAACTATAGCCATC
389 CAATTGAGGAGAAAAGAATGTCAATTATTTTTGTATGCACCAATCATCATCAAACTATAGCCATC
77193925 ATTTTGAAGCTGCAGATTTAT
454 ATTTTGAAGCTGCAGATTTAT
77193946 TGTTGTTCTTTCTAATTTAGTTATTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAAC
1 TGTTGTTCTTTCTAATTTAGTTATTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAAC
77194011 AATTCAACCATTTTTTATAAATGTAGTTTAACATATTTTTTTTTGTTTAATTTATGCTGCTGTAT
66 AATTCAACCA-TTTTTATAAATGTAGTTTAACATA-TTTTTTTTGTTTAATTTATGCTGCTGTAT
77194076 ATTAT
129 ATTAT
77194081 AATGGTTTCT
Statistics
Matches: 606, Mismatches: 3, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
475 338 0.56
476 210 0.35
477 58 0.10
ACGTcount: A:0.35, C:0.11, G:0.09, T:0.46
Consensus pattern (474 bp):
TGTTGTTCTTTCTAATTTAGTTATTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAAC
AATTCAACCATTTTTATAAATGTAGTTTAACATATTTTTTTTGTTTAATTTATGCTGCTGTATAT
TATTTAATTTTTAATTTAATCGATTGAGGAGAAAAGAATGTCAATTATTTTTGTATGCACCAATC
ATCATCAAACTATAGCCATCATTTTGAAGCTGCAGATTTATTGTTGTTCTTTCTAATTTAGTTAT
TATTTTATATATTCAAAAACTTATAATTATAAAAATAAAACAATTCAACCATTTTTTATAAATGT
AGTTTAACATACTTTTTTTTGTTTAATTTATGCTGCTATATATTATTTAATTTTTAATTTAATCA
ATTGAGGAGAAAAGAATGTCAATTATTTTTGTATGCACCAATCATCATCAAACTATAGCCATCAT
TTTGAAGCTGCAGATTTAT
Found at i:77196867 original size:18 final size:18
Alignment explanation
Indices: 77196844--77196882 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
77196834 ATAGCATGAA
77196844 AATACAAATAAACGAAAT
1 AATACAAATAAACGAAAT
* **
77196862 AATACACATAATGGAAAT
1 AATACAAATAAACGAAAT
77196880 AAT
1 AAT
77196883 TACACAACAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.10, G:0.08, T:0.21
Consensus pattern (18 bp):
AATACAAATAAACGAAAT
Found at i:77197109 original size:40 final size:42
Alignment explanation
Indices: 77197048--77197130 Score: 118
Period size: 40 Copynumber: 2.0 Consensus size: 42
77197038 ATAAAAAAAC
*
77197048 TAAAATAAATAACAATAAAAACAATTTT-AAATATATA-ATA
1 TAAAAAAAATAACAATAAAAACAATTTTAAAATATATATATA
*
77197088 TAAAAAAAATAAC-ATATAAAACAGTTTTAAAATATATATATA
1 TAAAAAAAATAACAATA-AAAACAATTTTAAAATATATATATA
77197130 T
1 T
77197131 GTAAAAATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
39 3 0.08
40 22 0.58
41 9 0.24
42 4 0.11
ACGTcount: A:0.63, C:0.05, G:0.01, T:0.31
Consensus pattern (42 bp):
TAAAAAAAATAACAATAAAAACAATTTTAAAATATATATATA
Found at i:77198761 original size:44 final size:44
Alignment explanation
Indices: 77198713--77199060 Score: 265
Period size: 44 Copynumber: 7.8 Consensus size: 44
77198703 TCATCGTTTT
* * *
77198713 AATCTGCTCCACTGCAACTTTAGGGAGATAGGATTTGCAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTC
* **
77198757 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGTATATTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTC
* * * *
77198801 AACCTGCTCTACTACAACTTCAGGGAGATAAGGTTTG-A--TAT-
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCT-TC
* * * * * *
77198842 GATCTTCTCTACTGCAAATTCAGAGAGATAAGATCTACAATTTATAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAG-------ATTTGTAGCTTC
** * * *
77198893 AATCTATTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTC
* * * * *
77198938 AGTCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTC
* * * * * *
77198982 TATCTGCCCCACTGCAACTTTAAGGG-GATAAGATTAGTGGCTTT
1 AATCTGCTCCACTGCAAC-TTCAGGGAGATAAGATTTGTAGCTTC
* *
77199026 AATCTACTCCACTGCAACTTTAGGGAGATAAGATT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
77199061 CACCATAATG
Statistics
Matches: 238, Mismatches: 51, Indels: 30
0.75 0.16 0.09
Matches are distributed among these distances:
41 27 0.11
42 1 0.00
43 7 0.03
44 129 0.54
45 43 0.18
48 3 0.01
49 1 0.00
50 1 0.00
51 26 0.11
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTC
Found at i:77202102 original size:10 final size:10
Alignment explanation
Indices: 77202087--77202116 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
77202077 CCTTAACCTC
77202087 TTCTTTTTTT
1 TTCTTTTTTT
77202097 TTC-TTTTTT
1 TTCTTTTTTT
77202106 TTCTTTTTTT
1 TTCTTTTTTT
77202116 T
1 T
77202117 GAAACATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (10 bp):
TTCTTTTTTT
Found at i:77202105 original size:9 final size:9
Alignment explanation
Indices: 77202091--77202116 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
77202081 AACCTCTTCT
77202091 TTTTTTTTC
1 TTTTTTTTC
77202100 TTTTTTTTC
1 TTTTTTTTC
77202109 TTTTTTTT
1 TTTTTTTT
77202117 GAAACATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:77207407 original size:3 final size:3
Alignment explanation
Indices: 77207401--77207453 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
77207391 AATAATAATA
77207401 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
77207449 ATG AT
1 ATG AT
77207454 AATTAAAAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.34, C:0.00, G:0.32, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:77207797 original size:15 final size:15
Alignment explanation
Indices: 77207772--77207806 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
77207762 GACTCTATTT
*
77207772 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
77207786 TAATTAATATTAAGA
1 TAATTAATATTAAGA
77207801 TAATTA
1 TAATTA
77207807 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:77212481 original size:22 final size:22
Alignment explanation
Indices: 77212451--77212493 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
77212441 ACACCAAAAC
* *
77212451 AGGCTTTTAGCGGTGCTTTTTT
1 AGGCCTTTAGCGGCGCTTTTTT
77212473 AGGCCTTTAGCGGCGCTTTTT
1 AGGCCTTTAGCGGCGCTTTTT
77212494 AGCGTCACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.09, C:0.19, G:0.28, T:0.44
Consensus pattern (22 bp):
AGGCCTTTAGCGGCGCTTTTTT
Done.