Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 231 of 235
Found at i:77406027 original size:97 final size:97
Alignment explanation
Indices: 77405900--77406092 Score: 359
Period size: 97 Copynumber: 2.0 Consensus size: 97
77405890 AAGTTAATTA
* *
77405900 GTTTAGGGTTTAATTAGGTTAGAGTTTTTAATTTAATTAGGTTAGGGTTTTCAATTTAATTAGGT
1 GTTTAGAGTTTAATTAGGTTAGAGTTTTTAATTTAATTAGGTTAGAGTTTTCAATTTAATTAGGT
77405965 TAGGGTTTTCTTTTCAATTTAATTAGGTTAGG
66 TAGGGTTTTCTTTTCAATTTAATTAGGTTAGG
*
77405997 GTTTAGAGTTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGAGTTTTCAATTTAATTAGGT
1 GTTTAGAGTTTAATTAGGTTAGAGTTTTTAATTTAATTAGGTTAGAGTTTTCAATTTAATTAGGT
77406062 TAGGGTTTTCTTTTCAATTTAATTAGGTTAG
66 TAGGGTTTTCTTTTCAATTTAATTAGGTTAG
77406093 TACAATTCTC
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
97 93 1.00
ACGTcount: A:0.25, C:0.03, G:0.22, T:0.50
Consensus pattern (97 bp):
GTTTAGAGTTTAATTAGGTTAGAGTTTTTAATTTAATTAGGTTAGAGTTTTCAATTTAATTAGGT
TAGGGTTTTCTTTTCAATTTAATTAGGTTAGG
Found at i:77406166 original size:25 final size:25
Alignment explanation
Indices: 77406137--77406260 Score: 134
Period size: 25 Copynumber: 5.1 Consensus size: 25
77406127 ATTCAAAAAT
77406137 TTCTATTTTATTACATCAAATAAAC
1 TTCTATTTTATTACATCAAATAAAC
*
77406162 TTCTATTTTATTATATCAAAT-AA-
1 TTCTATTTTATTACATCAAATAAAC
** * * *
77406185 TATC-A--CAATAAC-TCAAAAAAAT
1 T-TCTATTTTATTACATCAAATAAAC
77406207 TTCTATTTTTATTACATCAAATAAAC
1 TTCTA-TTTTATTACATCAAATAAAC
77406233 TTCTATTTTATTACATCAAATAAAC
1 TTCTATTTTATTACATCAAATAAAC
77406258 TTC
1 TTC
77406261 AAAATAATCA
Statistics
Matches: 80, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
20 5 0.06
21 7 0.09
22 2 0.03
23 2 0.03
24 4 0.05
25 47 0.59
26 13 0.16
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.43
Consensus pattern (25 bp):
TTCTATTTTATTACATCAAATAAAC
Found at i:77406272 original size:71 final size:68
Alignment explanation
Indices: 77406114--77406273 Score: 227
Period size: 71 Copynumber: 2.3 Consensus size: 68
77406104 AATAATATCA
* *
77406114 AAAT-ATTCAAAATATTC--AAAAATTTCTATTTTATTACATCAAATAAACTTCTATTTTATTAT
1 AAATAATTCAAAATAATCAAAAAAATTTCTATTTTATTACATCAAATAAACTTCTATTTTATTAC
77406176 ATC
66 ATC
*
77406179 AAATAATATCACAATAACTCAAAAAAATTTCTATTTTTATTACATCAAATAAACTTCTATTTTAT
1 AAATAAT-TCAAAATAA-TCAAAAAAATTTCTA-TTTTATTACATCAAATAAACTTCTATTTTAT
77406244 TACATC
63 TACATC
77406250 AAATAAACTTCAAAATAATCAAAA
1 AAAT-AA-TTCAAAATAATCAAAA
77406274 TATTTGTACA
Statistics
Matches: 83, Mismatches: 4, Indels: 10
0.86 0.04 0.10
Matches are distributed among these distances:
65 4 0.05
66 2 0.02
67 7 0.08
68 2 0.02
70 11 0.13
71 46 0.55
72 10 0.12
73 1 0.01
ACGTcount: A:0.47, C:0.14, G:0.00, T:0.39
Consensus pattern (68 bp):
AAATAATTCAAAATAATCAAAAAAATTTCTATTTTATTACATCAAATAAACTTCTATTTTATTAC
ATC
Found at i:77406710 original size:18 final size:18
Alignment explanation
Indices: 77406687--77406723 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
77406677 CTCGGAAAAA
*
77406687 GATACATATAAGGGTTAG
1 GATACATATAAGGGCTAG
77406705 GATACATATAAGGGCTAG
1 GATACATATAAGGGCTAG
77406723 G
1 G
77406724 GAACGCACCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.38, C:0.08, G:0.30, T:0.24
Consensus pattern (18 bp):
GATACATATAAGGGCTAG
Found at i:77407385 original size:7 final size:7
Alignment explanation
Indices: 77407375--77407399 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
77407365 TTATATACAT
77407375 AATACTA
1 AATACTA
77407382 AATACTA
1 AATACTA
77407389 AATACTA
1 AATACTA
77407396 AATA
1 AATA
77407400 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:77407607 original size:20 final size:20
Alignment explanation
Indices: 77407570--77407607 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
77407560 TTTAATTTTA
*
77407570 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
77407590 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
77407608 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:77409528 original size:42 final size:42
Alignment explanation
Indices: 77409470--77409569 Score: 164
Period size: 42 Copynumber: 2.4 Consensus size: 42
77409460 GCTCTCGGTA
*
77409470 TCGCACACTTAGTGCCCGTTATTCAACATCATCATTTTAATT
1 TCGCACACTTAGTGCCCATTATTCAACATCATCATTTTAATT
* * *
77409512 TCGTACACTTAGTGCCCATTATTCAACATCGTCATTTTAGTT
1 TCGCACACTTAGTGCCCATTATTCAACATCATCATTTTAATT
77409554 TCGCACACTTAGTGCC
1 TCGCACACTTAGTGCC
77409570 GTTCATATAG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.37
Consensus pattern (42 bp):
TCGCACACTTAGTGCCCATTATTCAACATCATCATTTTAATT
Found at i:77413696 original size:11 final size:11
Alignment explanation
Indices: 77413674--77413713 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
77413664 ATTTCTTTTT
77413674 TTTTTCTT-TC
1 TTTTTCTTCTC
77413684 TTTTTCTTCTC
1 TTTTTCTTCTC
*
77413695 TTCTTCTTCTC
1 TTTTTCTTCTC
*
77413706 TCTTTCTT
1 TTTTTCTT
77413714 TCACTAAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
10 8 0.31
11 18 0.69
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (11 bp):
TTTTTCTTCTC
Found at i:77416740 original size:23 final size:25
Alignment explanation
Indices: 77416688--77416800 Score: 115
Period size: 25 Copynumber: 4.5 Consensus size: 25
77416678 CATCTCGTAT
* * *
77416688 GAGCTTACTGATATATCAGCTC-TTA
1 GAGCTTACCGATCT-TCAGCTCGATA
77416713 TGAGCTTACC-AT-TTCAGCTCGATA
1 -GAGCTTACCGATCTTCAGCTCGATA
*
77416737 GAGCTTACCGTTCTTCAGCTCGATA
1 GAGCTTACCGATCTTCAGCTCGATA
* * *
77416762 GAGCTTACCGTTCTTCAGCTCAAAA
1 GAGCTTACCGATCTTCAGCTCGATA
77416787 TGAGCTTACCGATC
1 -GAGCTTACCGATC
77416801 ATGGCTCGAA
Statistics
Matches: 77, Mismatches: 6, Indels: 8
0.85 0.07 0.09
Matches are distributed among these distances:
23 16 0.21
24 4 0.05
25 37 0.48
26 20 0.26
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.32
Consensus pattern (25 bp):
GAGCTTACCGATCTTCAGCTCGATA
Found at i:77416758 original size:25 final size:25
Alignment explanation
Indices: 77416725--77416797 Score: 119
Period size: 25 Copynumber: 2.9 Consensus size: 25
77416715 AGCTTACCAT
77416725 TTCAGCTCGATAGAGCTTACCGTTC
1 TTCAGCTCGATAGAGCTTACCGTTC
77416750 TTCAGCTCGATAGAGCTTACCGTTC
1 TTCAGCTCGATAGAGCTTACCGTTC
* *
77416775 TTCAGCTCAAAATGAGCTTACCG
1 TTCAGCTCGATA-GAGCTTACCG
77416798 ATCATGGCTC
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
25 35 0.78
26 10 0.22
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (25 bp):
TTCAGCTCGATAGAGCTTACCGTTC
Found at i:77418598 original size:21 final size:20
Alignment explanation
Indices: 77418570--77418613 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
77418560 TTCAATAATT
* *
77418570 ATTATATCACCTTACACTTC
1 ATTATATCACATAACACTTC
77418590 ATTACTATCACATAACACTTC
1 ATTA-TATCACATAACACTTC
77418611 ATT
1 ATT
77418614 TAAGTCTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.34, C:0.27, G:0.00, T:0.39
Consensus pattern (20 bp):
ATTATATCACATAACACTTC
Found at i:77421069 original size:3 final size:3
Alignment explanation
Indices: 77421061--77421125 Score: 51
Period size: 3 Copynumber: 21.0 Consensus size: 3
77421051 GGGTTTTAAA
* * * * *
77421061 AAT AAT AAT ACT AAT AAT AAT GAG AAT AAT -AT GAAT GAT AAT AAA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
77421106 AAT AAT AAAT AAT GAAT AAT
1 AAT AAT -AAT AAT -AAT AAT
77421126 CTAAGGTTTG
Statistics
Matches: 48, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
2 2 0.04
3 38 0.79
4 8 0.17
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:77421366 original size:82 final size:78
Alignment explanation
Indices: 77421207--77421366 Score: 180
Period size: 79 Copynumber: 2.0 Consensus size: 78
77421197 AAATATTAGG
**
77421207 TAAATAAATATAAAAAGAAATATAATAGAAATAATAATGAAAAACTAATTAATTTAATAATATGA
1 TAAATAAATATAAAAAGAAATATAATAGAAATAATAATGAAAAACTAATTAATTTAATAATAAAA
*
77421272 TAATAATAACAAA
66 TAAAAATAACAAA
* * * **
77421285 TAAATAAATA-AAAAGGAAAATAATAATAGTAATAATAAT-ATTAATTTAATTAATTTAATAATA
1 TAAATAAATATAAAAAG-AAAT-ATAATAGAAATAATAATGA-AAAACTAATTAATTTAATAATA
77421348 AAATAGCAAAAATAACAAA
63 AAAT---AAAAATAACAAA
77421367 AAAAGGGGGC
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
77 5 0.07
78 15 0.22
79 37 0.54
82 11 0.16
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.29
Consensus pattern (78 bp):
TAAATAAATATAAAAAGAAATATAATAGAAATAATAATGAAAAACTAATTAATTTAATAATAAAA
TAAAAATAACAAA
Found at i:77430534 original size:45 final size:45
Alignment explanation
Indices: 77430470--77430588 Score: 159
Period size: 45 Copynumber: 2.7 Consensus size: 45
77430460 TTGTAACCTA
* *
77430470 AACCAGAAGGCAAAGATACAGTCAGTGATGGAACAGCAGATTCTG
1 AACCAGAAGGCAAAAATACAGTCAGTGATGGAACAGCAGATCCTG
* * * *
77430515 AACCAGAAGGCAAATATACAATCGGTAATGGAACAGCAGATCCTG
1 AACCAGAAGGCAAAAATACAGTCAGTGATGGAACAGCAGATCCTG
* *
77430560 AATCAGAAGGTAAAAATACAGT-AGTGATG
1 AACCAGAAGGCAAAAATACAGTCAGTGATG
77430589 AGACAGTGGT
Statistics
Matches: 63, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
44 5 0.08
45 58 0.92
ACGTcount: A:0.43, C:0.16, G:0.24, T:0.17
Consensus pattern (45 bp):
AACCAGAAGGCAAAAATACAGTCAGTGATGGAACAGCAGATCCTG
Found at i:77432761 original size:12 final size:12
Alignment explanation
Indices: 77432729--77432761 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
77432719 ATTAAGTAAA
77432729 TAAATAAAA-AT
1 TAAATAAAATAT
*
77432740 TAAATGAAATAT
1 TAAATAAAATAT
77432752 TAAATAAAAT
1 TAAATAAAAT
77432762 GTTTTTTATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (12 bp):
TAAATAAAATAT
Found at i:77434597 original size:40 final size:40
Alignment explanation
Indices: 77434534--77435022 Score: 190
Period size: 40 Copynumber: 11.8 Consensus size: 40
77434524 GTGTTTTTAA
* ** *
77434534 TCTGCTCCACTGCAACTTCAGGGAGATAGGATTTTTTTCTG
1 TCTGCTCCACTACTGCTT-AGGGAGATAAGATTTTTTTCTG
***** *
77434575 TCTGCTCCACTACTGCTTAGGGAGATAAGACGGGATAC-G
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTTTTTTCTG
* *
77434614 ATCTGCTCCACTACTGCTTAGAGAGATAAGATTTGTGATTT-TAA
1 -TCTGCTCCACTACTGCTTAGGGAGATAAGATTT-T--TTTCT-G
* * ** *
77434658 TCCGTTCCACTACAACTTCAGGGAGATAGGATTGATTTCTTCTG
1 TCTGCTCCACTACTGCTT-AGGGAGATAAGATT--TTT-TTCTG
***** *
77434702 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CGGGATGTG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTTTTTTCTG
* * * * *
77434741 ATCTGCTCTACTGTAAT-TTTAGAGAGATAAGATTTGTGGTTT-TAA
1 -TCTGCTCCAC--TACTGCTTAGGGAGATAAGATTT-T--TTTCT-G
* * *
77434786 TCCGCTCCACTGTAAT--TTCAGGGAGATAGGA-TTTTTT-TG
1 TCTGCTCCAC--TACTGCTT-AGGGAGATAAGATTTTTTTCTG
* ** * **
77434825 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTTTTTTCTG
* * **
77434865 ACTGCTCCACTACTGCTTATGGAGATAAGATCTATGGTTTT-AA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGAT-T-T--TTTTCTG
* * ** *
77434908 TCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCTG
1 TCTGCTCCACTACTGCTT-AGGGAGATAAGATT--TTT-TTCTG
* ** *
77434952 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGC-G
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTTTTTTCTG
77434991 ATCTGCTCCACTACTGCTTAGGGAGATAAGAT
1 -TCTGCTCCACTACTGCTTAGGGAGATAAGAT
77435023 CTGTGGTTTT
Statistics
Matches: 331, Mismatches: 84, Indels: 67
0.69 0.17 0.14
Matches are distributed among these distances:
37 3 0.01
38 11 0.03
39 19 0.06
40 115 0.35
41 30 0.09
42 7 0.02
43 61 0.18
44 81 0.24
45 3 0.01
46 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.33
Consensus pattern (40 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATTTTTTTCTG
Found at i:77434933 original size:250 final size:251
Alignment explanation
Indices: 77434448--77435067 Score: 933
Period size: 250 Copynumber: 2.5 Consensus size: 251
77434438 ATTTCCTTTA
* * * * *
77434448 GTCTGCTCCGCTACTACTTAAGGGAGATAAGACGGGATGCGATCTGCTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTACTGCTT-AGGGAGATAAGACGGGATGCGATCTGCTCTACTGTAATTTTAGAG
* *
77434513 AGATAAGATCTGTGTTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTTTTTTCTGTCT
65 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGA-TTTTTTCTGTCT
* *
77434578 GCTCCACTACTGCTTAGGGAGATAAGACGGGATACGATCTGCTCCACTACTGCTTAGAGAGATAA
129 GCTCCACTACTGCTTAGGGAGATAAGACGGGATACAAACTGCTCCACTACTGCTTAGAGAGATAA
* * *
77434643 GATTTGTGATTTTAATCCGTTCCACTACAACTTCAGGGAGATAGGATTGATTTCTTCT
194 GATCTATGATTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTGATTTCTTCT
*
77434701 GTCTGCTCCACTACTGCTTAGGGAGATAAGACGGGATGTGATCTGCTCTACTGTAATTTTAGAGA
1 GTCTGCTCCACTACTGCTTAGGGAGATAAGACGGGATGCGATCTGCTCTACTGTAATTTTAGAGA
* * *
77434766 GATAAGATTTGTGGTTTTAATCCGCTCCACTGTAATTTCAGGGAGATAGGATTTTTT-TGTCTGC
66 GATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTTTTTCTGTCTGC
** *
77434830 TCCACTACTGCTTAGGGAGATAAGACTTGATGCAAACTGCTCCACTACTGCTTATG-GAGATAAG
131 TCCACTACTGCTTAGGGAGATAAGACGGGATACAAACTGCTCCACTACTGCTTA-GAGAGATAAG
* *
77434894 ATCTATGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCT
195 ATCTATGATTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTGATTTCTTCT
** * * * *
77434951 GTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCAC--TACTGCTTAGGG
1 GTCTGCTCCACTACTGCTTAGGGAGATAAGACGGGATGCGATCTGCTCTACTGTAAT-TTTAGAG
77435014 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATT
65 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATT
77435068 GATTTCTTTC
Statistics
Matches: 334, Mismatches: 31, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
248 3 0.01
249 56 0.17
250 163 0.49
251 7 0.02
252 88 0.26
253 17 0.05
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (251 bp):
GTCTGCTCCACTACTGCTTAGGGAGATAAGACGGGATGCGATCTGCTCTACTGTAATTTTAGAGA
GATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTTTTTCTGTCTGC
TCCACTACTGCTTAGGGAGATAAGACGGGATACAAACTGCTCCACTACTGCTTAGAGAGATAAGA
TCTATGATTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTGATTTCTTCT
Found at i:77435000 original size:127 final size:127
Alignment explanation
Indices: 77434448--77435075 Score: 889
Period size: 127 Copynumber: 5.0 Consensus size: 127
77434438 ATTTCCTTTA
* * * * **
77434448 GTCTGCTCCGCTACTACTTAAGGGAGATAAGACGGGATGCGATCTGCTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTACTGCTT-AGGGAGATAAGACGGGATGCGATCTGCTCCACTACTGCTT-AGAG
* *
77434513 AGATAAGATCTGTGTTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATT--TTT-TTCT
64 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCT
*
77434574 GTCTGCTCCACTACTGCTTAGGGAGATAAGACGGGATACGATCTGCTCCACTACTGCTTAGAGAG
1 GTCTGCTCCACTACTGCTTAGGGAGATAAGACGGGATGCGATCTGCTCCACTACTGCTTAGAGAG
* * * *
77434639 ATAAGATTTGTGATTTTAATCCGTTCCACTACAACTTCAGGGAGATAGGATTGATTTCTTCT
66 ATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCT
* * * *
77434701 GTCTGCTCCACTACTGCTTAGGGAGATAAGACGGGATGTGATCTGCTCTACTGTAAT-TTTAGAG
1 GTCTGCTCCACTACTGCTTAGGGAGATAAGACGGGATGCGATCTGCTCCAC--TACTGCTTAGAG
* * *
77434765 AGATAAGATTTGTGGTTTTAATCCGCTCCACTGTAATTTCAGGGAGATAGGA-T--TTT-TT-T
64 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCT
** * *
77434824 GTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCAAACTGCTCCACTACTGCTTATG-GA
1 GTCTGCTCCACTACTGCTTAGGGAGATAAGACGGGATGCGATCTGCTCCACTACTGCTTA-GAGA
*
77434888 GATAAGATCTATGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCT
65 GATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCT
** *
77434951 GTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAG
1 GTCTGCTCCACTACTGCTTAGGGAGATAAGACGGGATGCGATCTGCTCCACTACTGCTTAGAGAG
77435016 ATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTT
66 ATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTT
77435076 TCAAATTGAC
Statistics
Matches: 452, Mismatches: 37, Indels: 25
0.88 0.07 0.05
Matches are distributed among these distances:
121 3 0.01
122 52 0.12
123 48 0.11
124 55 0.12
125 41 0.09
126 23 0.05
127 174 0.38
128 53 0.12
129 3 0.01
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (127 bp):
GTCTGCTCCACTACTGCTTAGGGAGATAAGACGGGATGCGATCTGCTCCACTACTGCTTAGAGAG
ATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCT
Found at i:77435163 original size:50 final size:50
Alignment explanation
Indices: 77435097--77435740 Score: 370
Period size: 50 Copynumber: 12.9 Consensus size: 50
77435087 GCAATGTCAC
* **
77435097 GGAA-CAAGATTTGCCGTTGTAGCTTTAATCTGTTTTACTGCACCACCAG
1 GGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGTTTTACTGCACTGCCAG
* * * * * **
77435146 GGAAGTAAGATTCGCCGTT-TCAGCTTCAATCT-TTTAAATTGCAATATCAG
1 GGAAGCAAGATTCGCCGTTGT-AGCTTTAATCTGTTT-TACTGCACTGCCAG
* * * ** ** * *
77435196 GGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCCACTATACTACTAG
1 GGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGTTTTACTGCACTGCCAG
** * * * * * * *
77435246 GGAAGTGAGATTCGCCATTGTGGCTTCAATCT-TTTTAATTGCAATGTCGG
1 GGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGTTTT-ACTGCACTGCCAG
* * *
77435296 GGAAACAAAATTCGCCGTTGTAGCTTTAATCTGTTCTACTGCACTGCCAG
1 GGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGTTTTACTGCACTGCCAG
* * ** * * * * * **
77435346 GGAAGTAAGATTCACCGTTGCGGCTTCAATAT-TTTAAATTGCAATATCAG
1 GGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGTTT-TACTGCACTGCCAG
* * * * ** *
77435396 GGAAGCAAGATTCACCATCGTAGCTTTAATCTGCTCCACTGTACTGCCAG
1 GGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGTTTTACTGCACTGCCAG
** * * * * *
77435446 GGAAGTGAGATTCGCCGTTGTGGCTTCAATCT-TTTTAATTGCAATGTCAG
1 GGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGTTTT-ACTGCACTGCCAG
* * *
77435496 GGAAACAAGATTCGTCGTTGTAGCTTTAATCTGTTTTACTGCACCGCCAG
1 GGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGTTTTACTGCACTGCCAG
* * * * * * **
77435546 GGAAGTAAGATTCGCCGTTGT-GACTTCAATCT-TTTAAATTACAATATCAG
1 GGAAGCAAGATTCGCCGTTGTAG-CTTTAATCTGTTT-TACTGCACTGCCAG
* * * * * * * * *
77435596 AGAAGTAAGATTTGCTGTCGTAGCTTTAATCTGCTCTACTGTACTTCCAG
1 GGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGTTTTACTGCACTGCCAG
* * * * * **
77435646 GGAAGCGAGATTCGCCGTTGTGGCTTCAATCT-TTTTAATTGCAATGTTAG
1 GGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGTTTT-ACTGCACTGCCAG
* * * *
77435696 GGAAGCAAGATTCGCCGTCGTAGCCTTAATCTGCTTCACTGCACT
1 GGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGTTTTACTGCACT
77435741 TTCAGGAAAG
Statistics
Matches: 424, Mismatches: 154, Indels: 33
0.69 0.25 0.05
Matches are distributed among these distances:
49 18 0.04
50 392 0.92
51 14 0.03
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (50 bp):
GGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGTTTTACTGCACTGCCAG
Found at i:77435219 original size:100 final size:100
Alignment explanation
Indices: 77435086--77435740 Score: 794
Period size: 100 Copynumber: 6.6 Consensus size: 100
77435076 TCAAATTGAC
* * * * * **
77435086 TGCAATGTCACGGAA-CAAGATTTGCCGTTGTAGCTTTAATCTGTTTTACTGCACCACCAGGGAA
1 TGCAATGTCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCTACTGCACTGCCAGGGAA
*
77435150 GTAAGATTCGCCGTT-TCAGCTTCAATCTTTTAAAT
66 GTAAGATTCGCCGTTGT-GGCTTCAATCTTTTAAAT
* * * ** * *
77435185 TGCAATATCAGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCCACTATACTACTAGGGAA
1 TGCAATGTCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCTACTGCACTGCCAGGGAA
* * *
77435250 GTGAGATTCGCCATTGTGGCTTCAATCTTTTTAAT
66 GTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
* * * * *
77435285 TGCAATGTCGGGGAAACAAAATTCGCCGTTGTAGCTTTAATCTGTTCTACTGCACTGCCAGGGAA
1 TGCAATGTCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCTACTGCACTGCCAGGGAA
* * *
77435350 GTAAGATTCACCGTTGCGGCTTCAATATTTTAAAT
66 GTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
* * * * *
77435385 TGCAATATCAGGGAAGCAAGATTCACCATCGTAGCTTTAATCTGCTCCACTGTACTGCCAGGGAA
1 TGCAATGTCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCTACTGCACTGCCAGGGAA
* *
77435450 GTGAGATTCGCCGTTGTGGCTTCAATCTTTTTAAT
66 GTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
* * * * * *
77435485 TGCAATGTCAGGGAAACAAGATTCGTCGTTGTAGCTTTAATCTGTTTTACTGCACCGCCAGGGAA
1 TGCAATGTCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCTACTGCACTGCCAGGGAA
*
77435550 GTAAGATTCGCCGTTGTGACTTCAATCTTTTAAAT
66 GTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
* * * * * * * *
77435585 TACAATATCAGAGAAGTAAGATTTGCTGTCGTAGCTTTAATCTGCTCTACTGTACTTCCAGGGAA
1 TGCAATGTCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCTACTGCACTGCCAGGGAA
** *
77435650 GCGAGATTCGCCGTTGTGGCTTCAATCTTTTTAAT
66 GTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
* *
77435685 TGCAATGTTAGGGAAGCAAGATTCGCCGTCGTAGCCTTAATCTGCT-TCACTGCACT
1 TGCAATGTCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCT-ACTGCACT
77435741 TTCAGGAAAG
Statistics
Matches: 463, Mismatches: 90, Indels: 5
0.83 0.16 0.01
Matches are distributed among these distances:
99 14 0.03
100 448 0.97
101 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (100 bp):
TGCAATGTCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCTACTGCACTGCCAGGGAA
GTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
Found at i:77435452 original size:200 final size:200
Alignment explanation
Indices: 77435086--77435739 Score: 988
Period size: 200 Copynumber: 3.3 Consensus size: 200
77435076 TCAAATTGAC
* * * *
77435086 TGCAATGTCACGG-AACAAGATTTGCCGTTGTAGCTTTAATCTGTTTTACTGCACCACCAGGGAA
1 TGCAATGTCAGGGAAACAAGATTCGCCGTTGTAGCTTTAATCTGTTCTACTGCACCGCCAGGGAA
* *
77435150 GTAAGATTCGCCGTTTCAGCTTCAATCTTTTAAATTGCAATATCAGGGAAGCAAGATTCACCGTC
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTAAATTGCAATATCAGGGAAGCAAGATTCACCGTC
* * *
77435215 GTAGCTTTAATCTGCTCCACTATACTACTAGGGAAGTGAGATTCGCCATTGTGGCTTCAATCTTT
131 GTAGCTTTAATCTGCTCCACTGTACTACCAGGGAAGTGAGATTCGCCGTTGTGGCTTCAATCTTT
77435280 TTAAT
196 TTAAT
* * *
77435285 TGCAATGTCGGGGAAACAAAATTCGCCGTTGTAGCTTTAATCTGTTCTACTGCACTGCCAGGGAA
1 TGCAATGTCAGGGAAACAAGATTCGCCGTTGTAGCTTTAATCTGTTCTACTGCACCGCCAGGGAA
* * *
77435350 GTAAGATTCACCGTTGCGGCTTCAATATTTTAAATTGCAATATCAGGGAAGCAAGATTCACCATC
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTAAATTGCAATATCAGGGAAGCAAGATTCACCGTC
*
77435415 GTAGCTTTAATCTGCTCCACTGTACTGCCAGGGAAGTGAGATTCGCCGTTGTGGCTTCAATCTTT
131 GTAGCTTTAATCTGCTCCACTGTACTACCAGGGAAGTGAGATTCGCCGTTGTGGCTTCAATCTTT
77435480 TTAAT
196 TTAAT
* *
77435485 TGCAATGTCAGGGAAACAAGATTCGTCGTTGTAGCTTTAATCTGTTTTACTGCACCGCCAGGGAA
1 TGCAATGTCAGGGAAACAAGATTCGCCGTTGTAGCTTTAATCTGTTCTACTGCACCGCCAGGGAA
* * * * * ** *
77435550 GTAAGATTCGCCGTTGTGACTTCAATCTTTTAAATTACAATATCAGAGAAGTAAGATTTGCTGTC
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTAAATTGCAATATCAGGGAAGCAAGATTCACCGTC
* * *
77435615 GTAGCTTTAATCTGCTCTACTGTACTTCCAGGGAAGCGAGATTCGCCGTTGTGGCTTCAATCTTT
131 GTAGCTTTAATCTGCTCCACTGTACTACCAGGGAAGTGAGATTCGCCGTTGTGGCTTCAATCTTT
77435680 TTAAT
196 TTAAT
* * * *
77435685 TGCAATGTTAGGGAAGCAAGATTCGCCGTCGTAGCCTTAATCTGCTTC-ACTGCAC
1 TGCAATGTCAGGGAAACAAGATTCGCCGTTGTAGCTTTAATCTG-TTCTACTGCAC
77435740 TTTCAGGAAA
Statistics
Matches: 412, Mismatches: 41, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
199 11 0.03
200 399 0.97
201 2 0.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (200 bp):
TGCAATGTCAGGGAAACAAGATTCGCCGTTGTAGCTTTAATCTGTTCTACTGCACCGCCAGGGAA
GTAAGATTCGCCGTTGCGGCTTCAATCTTTTAAATTGCAATATCAGGGAAGCAAGATTCACCGTC
GTAGCTTTAATCTGCTCCACTGTACTACCAGGGAAGTGAGATTCGCCGTTGTGGCTTCAATCTTT
TTAAT
Found at i:77436092 original size:24 final size:24
Alignment explanation
Indices: 77436060--77436105 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
77436050 TTTCCCCCAC
*
77436060 TGTAATCTTCAAAGTTCAATCCGT
1 TGTAATCTTCAAAGTTAAATCCGT
*
77436084 TGTAATCTTCAAGGTTAAATCC
1 TGTAATCTTCAAAGTTAAATCC
77436106 ATGGTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (24 bp):
TGTAATCTTCAAAGTTAAATCCGT
Found at i:77436112 original size:24 final size:24
Alignment explanation
Indices: 77436061--77436113 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
77436051 TTCCCCCACT
* * *
77436061 GTAATCTTCAAAGTTCAATCCGTT
1 GTAATCTTCAAAGTTAAATCCATG
*
77436085 GTAATCTTCAAGGTTAAATCCATG
1 GTAATCTTCAAAGTTAAATCCATG
77436109 GTAAT
1 GTAAT
77436114 TTTGGGATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (24 bp):
GTAATCTTCAAAGTTAAATCCATG
Found at i:77437134 original size:8 final size:8
Alignment explanation
Indices: 77437117--77437158 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 8
77437107 TCTTTTTTCG
*
77437117 TTCTTCTT
1 TTCTTTTT
77437125 TTCTTTTT
1 TTCTTTTT
77437133 TTCTTTTCT
1 TTCTTTT-T
*
77437142 TT-TTTGT
1 TTCTTTTT
77437149 TTCTTTTT
1 TTCTTTTT
77437157 TT
1 TT
77437159 TCAAGTGAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
7 3 0.10
8 23 0.79
9 3 0.10
ACGTcount: A:0.00, C:0.14, G:0.02, T:0.83
Consensus pattern (8 bp):
TTCTTTTT
Found at i:77437136 original size:13 final size:13
Alignment explanation
Indices: 77437120--77437158 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 13
77437110 TTTTTCGTTC
77437120 TTCTTTTCTTTTT
1 TTCTTTTCTTTTT
77437133 TTCTTTTC-TTTT
1 TTCTTTTCTTTTT
*
77437145 TT-GTTTCTTTTT
1 TTCTTTTCTTTTT
77437157 TT
1 TT
77437159 TCAAGTGAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
11 4 0.17
12 12 0.50
13 8 0.33
ACGTcount: A:0.00, C:0.13, G:0.03, T:0.85
Consensus pattern (13 bp):
TTCTTTTCTTTTT
Found at i:77437159 original size:13 final size:12
Alignment explanation
Indices: 77437109--77437159 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
77437099 CTCCTTCTTC
* *
77437109 TTTTTTCGTTCT
1 TTTTTTCTTTTT
*
77437121 TCTTTTCTTTTT
1 TTTTTTCTTTTT
77437133 TTCTTTTC-TTTT
1 TT-TTTTCTTTTT
*
77437145 TTGTTTCTTTTT
1 TTTTTTCTTTTT
77437157 TTT
1 TTT
77437160 CAAGTGAAGT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
11 4 0.13
12 22 0.71
13 5 0.16
ACGTcount: A:0.00, C:0.14, G:0.04, T:0.82
Consensus pattern (12 bp):
TTTTTTCTTTTT
Found at i:77437613 original size:12 final size:11
Alignment explanation
Indices: 77437588--77437658 Score: 61
Period size: 12 Copynumber: 5.9 Consensus size: 11
77437578 CCCGATAGAG
77437588 GTTTTTTGTTTT
1 GTTTTTT-TTTT
77437600 GTTCTTTTTTTT
1 GTT-TTTTTTTT
77437612 GTTTTTTTTGTTT
1 G-TTTTTTT-TTT
*
77437625 TTTTTACTTTTTT
1 GTTTT--TTTTTT
* *
77437638 GTGTTTTTTGT
1 GTTTTTTTTTT
77437649 GTTTTTTTTT
1 GTTTTTTTTT
77437659 GCCTCCACTG
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
11 13 0.27
12 17 0.35
13 15 0.31
14 3 0.06
ACGTcount: A:0.01, C:0.03, G:0.13, T:0.83
Consensus pattern (11 bp):
GTTTTTTTTTT
Found at i:77437616 original size:9 final size:9
Alignment explanation
Indices: 77437589--77437657 Score: 77
Period size: 9 Copynumber: 7.7 Consensus size: 9
77437579 CCGATAGAGG
77437589 TTTTTTG-T
1 TTTTTTGTT
* *
77437597 TTTGTTCTT
1 TTTTTTGTT
77437606 TTTTTTGTT
1 TTTTTTGTT
77437615 TTTTTTGTT
1 TTTTTTGTT
*
77437624 TTTTTTACTT
1 TTTTTT-GTT
*
77437634 TTTTGTGTT
1 TTTTTTGTT
*
77437643 TTTTGTGTT
1 TTTTTTGTT
77437652 TTTTTT
1 TTTTTT
77437658 TGCCTCCACT
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
8 5 0.10
9 39 0.76
10 7 0.14
ACGTcount: A:0.01, C:0.03, G:0.12, T:0.84
Consensus pattern (9 bp):
TTTTTTGTT
Found at i:77437634 original size:28 final size:27
Alignment explanation
Indices: 77437589--77437657 Score: 95
Period size: 28 Copynumber: 2.6 Consensus size: 27
77437579 CCGATAGAGG
* *
77437589 TTTTTTG-TTTTGTTCTTTTTTTTGTT
1 TTTTTTGTTTTTTTTCTTTTTTGTGTT
77437615 TTTTTTGTTTTTTTTACTTTTTTGTGTT
1 TTTTTTGTTTTTTTT-CTTTTTTGTGTT
*
77437643 TTTTGTGTTTTTTTT
1 TTTTTTGTTTTTTTT
77437658 TGCCTCCACT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 7 0.18
27 6 0.16
28 25 0.66
ACGTcount: A:0.01, C:0.03, G:0.12, T:0.84
Consensus pattern (27 bp):
TTTTTTGTTTTTTTTCTTTTTTGTGTT
Found at i:77437654 original size:26 final size:26
Alignment explanation
Indices: 77437606--77437655 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
77437596 TTTTGTTCTT
* *
77437606 TTTTTTGTTTTTTTTGTTTTTTTTAC
1 TTTTTTGTGTTTTTTGTGTTTTTTAC
77437632 TTTTTTGTGTTTTTTGTGTTTTTT
1 TTTTTTGTGTTTTTTGTGTTTTTT
77437656 TTTGCCTCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.02, C:0.02, G:0.12, T:0.84
Consensus pattern (26 bp):
TTTTTTGTGTTTTTTGTGTTTTTTAC
Found at i:77440417 original size:24 final size:25
Alignment explanation
Indices: 77440390--77440442 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 25
77440380 GGCCCTTTTG
*
77440390 TGAAATTTAATGCAAATG-ATGCAA
1 TGAAATGTAATGCAAATGCATGCAA
* *
77440414 TGAAATGTAATGCAGATGCATGGAA
1 TGAAATGTAATGCAAATGCATGCAA
77440439 TGAA
1 TGAA
77440443 TGCAAAAAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 16 0.64
25 9 0.36
ACGTcount: A:0.43, C:0.08, G:0.23, T:0.26
Consensus pattern (25 bp):
TGAAATGTAATGCAAATGCATGCAA
Found at i:77441715 original size:674 final size:674
Alignment explanation
Indices: 77440427--77441758 Score: 2529
Period size: 674 Copynumber: 2.0 Consensus size: 674
77440417 AATGTAATGC
*
77440427 AGATGCATGGAATGAATGCAAAAAGAAATGTTGATTCTGATTCAACTCTATTAGAACAGCTTTGC
1 AGATGCATGGAATGAATGCAAAAAGAAATGTTGATTCTGATTCAACTCTATTAGAACAGCTTTAC
77440492 TAGAAAATAAATCTCTGTACATAAAACAGATATATATACGGCTTTGCCCTTATATGCGGAGACAA
66 TAGAAAATAAATCTCTGTACATAAAACAGATATATATACGGCTTTGCCCTTATATGCGGAGACAA
77440557 TTAATCCTCTTCTTCATTCGAGCGTTAAGATAAATTTCACGAACTCTTCAAAAAGATGTCTATTC
131 TTAATCCTCTTCTTCATTCGAGCGTTAAGATAAATTTCACGAACTCTTCAAAAAGATGTCTATTC
* * *
77440622 TATCTCGTTTTCACTTGATCTGGGCCGCAACTCGTTGCTCACTCATCCTCGTAATGCTCATTGGC
196 TATCTCGTTTTCACTTGATCCGGGCCGCAACTCATTGCTCACTCATCCTCGTAATACTCATTGGC
77440687 TTCTTTTTAAGAAGGTTCAGCGGCTCTTGAATAATCTTTGTCATCTTGAATCCTTGGGCAAAGGA
261 TTCTTTTTAAGAAGGTTCAGCGGCTCTTGAATAATCTTTGTCATCTTGAATCCTTGGGCAAAGGA
77440752 GCAATAGTCTTGTAGTCTTCCATTAAACTATCATCCTTTTCTTATCACGTTTTCTTAGACCATAT
326 GCAATAGTCTTGTAGTCTTCCATTAAACTATCATCCTTTTCTTATCACGTTTTCTTAGACCATAT
77440817 TCGGACAACCGTATCGTTATCCACTTTATCAAGAAACCCATTTTCTTATGACAAGCTCTCTATTT
391 TCGGACAACCGTATCGTTATCCACTTTATCAAGAAACCCATTTTCTTATGACAAGCTCTCTATTT
77440882 AGCAACTGAACGTGAATCAACACCTCTTTTTAATGATGATAATACAATGCAATCATGATCAAAAC
456 AGCAACTGAACGTGAATCAACACCTCTTTTTAATGATGATAATACAATGCAATCATGATCAAAAC
77440947 AAAAGAAAACAGGTTAGTACAAAGCAAAAGCAAGCAAGAATAAATAAAACACCTATTCGGGTGAC
521 AAAAGAAAACAGGTTAGTACAAAGCAAAAGCAAGCAAGAATAAATAAAACACCTATTCGGGTGAC
77441012 CACTAAGGGTTTGAAGTGGTTCTTCCTAGGATGGGCTCTTAGGTTCATTATATGAGGTTCAGCTC
586 CACTAAGGGTTTGAAGTGGTTCTTCCTAGGATGGGCTCTTAGGTTCATTATATGAGGTTCAGCTC
77441077 TAAAGCAAAGGTACTTGAACCAGT
651 TAAAGCAAAGGTACTTGAACCAGT
77441101 AGATGCATGGAATGAATGCAAAAAGAAATGTTGATTCTGATTCAACTCTATTAGAACAGCTTTAC
1 AGATGCATGGAATGAATGCAAAAAGAAATGTTGATTCTGATTCAACTCTATTAGAACAGCTTTAC
* *
77441166 TAGAAAATAAATCTTTGTACATAAAACGGATATATATACGGCTTTGCCCTTATATGCGGAGACAA
66 TAGAAAATAAATCTCTGTACATAAAACAGATATATATACGGCTTTGCCCTTATATGCGGAGACAA
* *
77441231 TTGATCCTTTTCTTCATTCGAGCGTTAAGATAAATTTCACGAACTCTTCAAAAAGATGTCTATTC
131 TTAATCCTCTTCTTCATTCGAGCGTTAAGATAAATTTCACGAACTCTTCAAAAAGATGTCTATTC
*
77441296 TATCTCGTTTTCGCTTGATCCGGGCCGCAACTCATTGCTCACTCATCCTCGTAATACTCATTGGC
196 TATCTCGTTTTCACTTGATCCGGGCCGCAACTCATTGCTCACTCATCCTCGTAATACTCATTGGC
*
77441361 TTCTTTTTAAGAAGGTTCAGCGGCTCTTGAATAATCTTTGTCATCTTGAATCCTTGGGCAACGGA
261 TTCTTTTTAAGAAGGTTCAGCGGCTCTTGAATAATCTTTGTCATCTTGAATCCTTGGGCAAAGGA
*
77441426 GCAATAGTCTTGTAGTCTTCCATTAAACTATCATTCTTTTCTTATCACGTTTTCTTAGACCATAT
326 GCAATAGTCTTGTAGTCTTCCATTAAACTATCATCCTTTTCTTATCACGTTTTCTTAGACCATAT
77441491 TCGGACAACCGTATCGTTATCCACTTTATCAAGAAACCCATTTTCTTATGACAAGCTCTCTATTT
391 TCGGACAACCGTATCGTTATCCACTTTATCAAGAAACCCATTTTCTTATGACAAGCTCTCTATTT
*
77441556 AGCAACTGAACGTGAATCAACACCTCTTTTTAATGATGATAATGCAATGCAATCATGATCAAAAC
456 AGCAACTGAACGTGAATCAACACCTCTTTTTAATGATGATAATACAATGCAATCATGATCAAAAC
*
77441621 AAAAGAAAACAGGTTAGTACAAAGTAAAAGCAAGCAAGAATAAATAAAACACCTATTCGGGTGAC
521 AAAAGAAAACAGGTTAGTACAAAGCAAAAGCAAGCAAGAATAAATAAAACACCTATTCGGGTGAC
* *
77441686 CACTAAGGGTTTGAAGTGGTTCTTCCTAGGGTGGGCTCTTAGGTTCATTATATGTGGTTCAGCTC
586 CACTAAGGGTTTGAAGTGGTTCTTCCTAGGATGGGCTCTTAGGTTCATTATATGAGGTTCAGCTC
77441751 TAAAGCAA
651 TAAAGCAA
77441759 TGGCAAGAAT
Statistics
Matches: 643, Mismatches: 15, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
674 643 1.00
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (674 bp):
AGATGCATGGAATGAATGCAAAAAGAAATGTTGATTCTGATTCAACTCTATTAGAACAGCTTTAC
TAGAAAATAAATCTCTGTACATAAAACAGATATATATACGGCTTTGCCCTTATATGCGGAGACAA
TTAATCCTCTTCTTCATTCGAGCGTTAAGATAAATTTCACGAACTCTTCAAAAAGATGTCTATTC
TATCTCGTTTTCACTTGATCCGGGCCGCAACTCATTGCTCACTCATCCTCGTAATACTCATTGGC
TTCTTTTTAAGAAGGTTCAGCGGCTCTTGAATAATCTTTGTCATCTTGAATCCTTGGGCAAAGGA
GCAATAGTCTTGTAGTCTTCCATTAAACTATCATCCTTTTCTTATCACGTTTTCTTAGACCATAT
TCGGACAACCGTATCGTTATCCACTTTATCAAGAAACCCATTTTCTTATGACAAGCTCTCTATTT
AGCAACTGAACGTGAATCAACACCTCTTTTTAATGATGATAATACAATGCAATCATGATCAAAAC
AAAAGAAAACAGGTTAGTACAAAGCAAAAGCAAGCAAGAATAAATAAAACACCTATTCGGGTGAC
CACTAAGGGTTTGAAGTGGTTCTTCCTAGGATGGGCTCTTAGGTTCATTATATGAGGTTCAGCTC
TAAAGCAAAGGTACTTGAACCAGT
Found at i:77441884 original size:12 final size:12
Alignment explanation
Indices: 77441852--77441884 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
77441842 ATTAAGTAAA
77441852 TAAATAAAA-AT
1 TAAATAAAATAT
*
77441863 TAAATGAAATAT
1 TAAATAAAATAT
77441875 TAAATAAAAT
1 TAAATAAAAT
77441885 GTTTTTTATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (12 bp):
TAAATAAAATAT
Found at i:77443678 original size:12 final size:12
Alignment explanation
Indices: 77443646--77443678 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
77443636 ATTAAGTAAA
77443646 TAAATAAAA-AT
1 TAAATAAAATAT
*
77443657 TAAATGAAATAT
1 TAAATAAAATAT
77443669 TAAATAAAAT
1 TAAATAAAAT
77443679 GTTTTTTATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (12 bp):
TAAATAAAATAT
Found at i:77447934 original size:27 final size:27
Alignment explanation
Indices: 77447866--77447962 Score: 104
Period size: 27 Copynumber: 3.5 Consensus size: 27
77447856 TATTTAATGT
* * *
77447866 TTAAAAAGTATTTGTTACACTTTTATAA
1 TTAAAAA-TATGTATTACATTTTTATAA
* *
77447894 TTATAAATTATGTATTACATTTTTTTAA
1 TTA-AAAATATGTATTACATTTTTATAA
* * *
77447922 TTAAAAATGTGTATTTCGTTTTTATAA
1 TTAAAAATATGTATTACATTTTTATAA
77447949 TTAAAAATATGTAT
1 TTAAAAATATGTAT
77447963 GTCAAAAAAA
Statistics
Matches: 57, Mismatches: 11, Indels: 3
0.80 0.15 0.04
Matches are distributed among these distances:
27 32 0.56
28 22 0.39
29 3 0.05
ACGTcount: A:0.38, C:0.04, G:0.07, T:0.51
Consensus pattern (27 bp):
TTAAAAATATGTATTACATTTTTATAA
Found at i:77468439 original size:8 final size:7
Alignment explanation
Indices: 77468420--77468469 Score: 73
Period size: 7 Copynumber: 6.7 Consensus size: 7
77468410 ATTAAATATA
77468420 TTTATGGG
1 TTTA-GGG
77468428 TTTAGGG
1 TTTAGGG
77468435 TTTTAGGG
1 -TTTAGGG
77468443 TTTAGGG
1 TTTAGGG
77468450 TTTAGGG
1 TTTAGGG
77468457 TTTATGGG
1 TTTA-GGG
77468465 TTTAG
1 TTTAG
77468470 TTTAACTCTA
Statistics
Matches: 40, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
7 22 0.55
8 18 0.45
ACGTcount: A:0.14, C:0.00, G:0.38, T:0.48
Consensus pattern (7 bp):
TTTAGGG
Found at i:77468468 original size:15 final size:14
Alignment explanation
Indices: 77468420--77468469 Score: 73
Period size: 15 Copynumber: 3.4 Consensus size: 14
77468410 ATTAAATATA
77468420 TTTATGGGTTTAGGG
1 TTTA-GGGTTTAGGG
77468435 TTTTAGGGTTTAGGG
1 -TTTAGGGTTTAGGG
77468450 TTTAGGGTTTATGGG
1 TTTAGGGTTTA-GGG
77468465 TTTAG
1 TTTAG
77468470 TTTAACTCTA
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
14 11 0.33
15 18 0.55
16 4 0.12
ACGTcount: A:0.14, C:0.00, G:0.38, T:0.48
Consensus pattern (14 bp):
TTTAGGGTTTAGGG
Found at i:77479925 original size:5 final size:5
Alignment explanation
Indices: 77479910--77479957 Score: 51
Period size: 5 Copynumber: 9.0 Consensus size: 5
77479900 GCAACCCAAT
* *
77479910 TTTTA TTTTTA CTTTA TTTATCA CTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA -TTTTA TTTTA TTT-T-A TTTTA TTTTA TTTTA TTTTA TTTTA
77479958 CTTATTTGGA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
5 26 0.72
6 7 0.19
7 3 0.08
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (5 bp):
TTTTA
Found at i:77479944 original size:97 final size:97
Alignment explanation
Indices: 77479752--77479940 Score: 292
Period size: 97 Copynumber: 2.0 Consensus size: 97
77479742 AACCACCATA
* * *
77479752 GAACCAATAACGGCGTCGACCTAACGACGTTAAACAAGCGCTTGTTGGTAGGCAACCCAATTTTT
1 GAACCAATAACGGCGTCGACCTAACAACGTTAAACAAGCCCTTGTTGGGAGGCAACCCAATTTTT
* * *
77479817 ATTTTTTATTTTTTTCTTTACTTTATTTATTG
66 ATTTTTTATTTATTTCATCACTTTATTTATTG
*
77479849 GAACCAATAACGGCGTCGAGCTAACAACGTTAAACAAGCCCTTGTTGGGAGGCAACCCAATTTTT
1 GAACCAATAACGGCGTCGACCTAACAACGTTAAACAAGCCCTTGTTGGGAGGCAACCCAATTTTT
77479914 A-TTTTTACTTTATTT-ATCACTTTATTT
66 ATTTTTTA-TTTATTTCATCACTTTATTT
77479941 TATTTTATTT
Statistics
Matches: 84, Mismatches: 7, Indels: 3
0.89 0.07 0.03
Matches are distributed among these distances:
96 16 0.19
97 68 0.81
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.38
Consensus pattern (97 bp):
GAACCAATAACGGCGTCGACCTAACAACGTTAAACAAGCCCTTGTTGGGAGGCAACCCAATTTTT
ATTTTTTATTTATTTCATCACTTTATTTATTG
Found at i:77480982 original size:7 final size:7
Alignment explanation
Indices: 77480970--77480994 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
77480960 TTCCTAAAGC
77480970 ATAATAA
1 ATAATAA
77480977 ATAATAA
1 ATAATAA
77480984 ATAATAA
1 ATAATAA
77480991 ATAA
1 ATAA
77480995 ATCAAAATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
ATAATAA
Found at i:77486201 original size:40 final size:40
Alignment explanation
Indices: 77486142--77486245 Score: 104
Period size: 40 Copynumber: 2.6 Consensus size: 40
77486132 AATCATTAAT
* * * *
77486142 ATATCTAAGTAATTT-TCAAAATTTATAATGTTTTACCAAA
1 ATATTTAAG-AATTTATCAAAATTTATAAGGCTATACCAAA
* *
77486182 ATATTTAAGAATTTATCAAAATTTCTAAGGCTATATCAAA
1 ATATTTAAGAATTTATCAAAATTTATAAGGCTATACCAAA
* *
77486222 ATATATAAAGATTTTAT-AAAATTT
1 ATAT-TTAAGAATTTATCAAAATTT
77486246 CTCCCTGATC
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
39 5 0.09
40 39 0.72
41 10 0.19
ACGTcount: A:0.45, C:0.08, G:0.06, T:0.41
Consensus pattern (40 bp):
ATATTTAAGAATTTATCAAAATTTATAAGGCTATACCAAA
Found at i:77486210 original size:20 final size:20
Alignment explanation
Indices: 77486145--77486247 Score: 61
Period size: 20 Copynumber: 5.2 Consensus size: 20
77486135 CATTAATATA
77486145 TCTAAGTAATTT-TCAAAATT
1 TCTAAG-AATTTATCAAAATT
* * *
77486165 TATAATG-TTTTACCAAAATAT
1 TCTAA-GAATTTATCAAAAT-T
77486186 T-TAAGAATTTATCAAAATT
1 TCTAAGAATTTATCAAAATT
** * *
77486205 TCTAAGGCTATATCAAAATA
1 TCTAAGAATTTATCAAAATT
* *
77486225 TATAAAGATTTTAT-AAAATT
1 TCT-AAGAATTTATCAAAATT
77486245 TCT
1 TCT
77486248 CCCTGATCAA
Statistics
Matches: 62, Mismatches: 15, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
19 6 0.10
20 46 0.74
21 10 0.16
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.42
Consensus pattern (20 bp):
TCTAAGAATTTATCAAAATT
Found at i:77486484 original size:20 final size:19
Alignment explanation
Indices: 77486452--77486553 Score: 89
Period size: 20 Copynumber: 5.0 Consensus size: 19
77486442 TTTAACATAT
*
77486452 CAAAATATCTAAGTATTTAC
1 CAAAATTTCTAAG-ATTTAC
*
77486472 CAGAATTTCTAAGATTATAC
1 CAAAATTTCTAAGATT-TAC
77486492 CAAAATTT-TCAAGACTTTAC
1 CAAAATTTCT-AAGA-TTTAC
* *
77486512 CAATATTTCTAAAAGTTTTAAC
1 CAAAATTTCT--AAGATTT-AC
77486534 CAAAATTTCTAAAGATTTAC
1 CAAAATTTCT-AAGATTTAC
77486554 TTAGTTGACT
Statistics
Matches: 68, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
19 4 0.06
20 37 0.54
21 13 0.19
22 14 0.21
ACGTcount: A:0.42, C:0.16, G:0.06, T:0.36
Consensus pattern (19 bp):
CAAAATTTCTAAGATTTAC
Found at i:77486706 original size:20 final size:20
Alignment explanation
Indices: 77486699--77486767 Score: 61
Period size: 20 Copynumber: 3.5 Consensus size: 20
77486689 GATTTGTCAG
77486699 TATTTCTAAGTGTTTATCAA
1 TATTTCTAAGTGTTTATCAA
* **
77486719 TATTTCTACGCATTTA-CTAA
1 TATTTCTAAGTGTTTATC-AA
* *
77486739 AATTTCTAAG-GATTTAACAA
1 TATTTCTAAGTG-TTTATCAA
77486759 TATTTCTAA
1 TATTTCTAA
77486768 AGGTAGTTCA
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
19 1 0.03
20 37 0.95
21 1 0.03
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.45
Consensus pattern (20 bp):
TATTTCTAAGTGTTTATCAA
Found at i:77486747 original size:60 final size:60
Alignment explanation
Indices: 77486654--77486767 Score: 149
Period size: 60 Copynumber: 1.9 Consensus size: 60
77486644 TTTATCAAAA
** *
77486654 ATCAATATTTCTAAAGATTTACCAAAACATCTAAGGATTTGTCAGTATTTCTAAGTGTTT
1 ATCAATATTTCTAAAGATTTACCAAAACATCTAAGGATTTAACAATATTTCTAAGTGTTT
* * **
77486714 ATCAATATTTCT-ACGCATTTACTAAAATTTCTAAGGATTTAACAATATTTCTAA
1 ATCAATATTTCTAAAG-ATTTACCAAAACATCTAAGGATTTAACAATATTTCTAA
77486768 AGGTAGTTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
59 2 0.04
60 44 0.96
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.40
Consensus pattern (60 bp):
ATCAATATTTCTAAAGATTTACCAAAACATCTAAGGATTTAACAATATTTCTAAGTGTTT
Found at i:77486975 original size:40 final size:40
Alignment explanation
Indices: 77486882--77486975 Score: 100
Period size: 40 Copynumber: 2.4 Consensus size: 40
77486872 AGAACCTTAA
* * *
77486882 AAATGTTGATAAATCCATAGATGTTTTAGTGGAACTTCAG
1 AAATTTTGATAAATCCATAGATATTTTAGTAGAACTTCAG
* * * *
77486922 AAATTTTGGTAAATCCATAGATATTTTGGTATAACTTTAG
1 AAATTTTGATAAATCCATAGATATTTTAGTAGAACTTCAG
*
77486962 GAATTCTT-ATAAAT
1 AAATT-TTGATAAAT
77486976 TTTGATAAAT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
40 42 0.95
41 2 0.05
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (40 bp):
AAATTTTGATAAATCCATAGATATTTTAGTAGAACTTCAG
Found at i:77487020 original size:20 final size:20
Alignment explanation
Indices: 77486972--77487022 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
77486962 GAATTCTTAT
* *
77486972 AAATTTTGATAAATCCTTAA
1 AAATTTTGGTAAATCATTAA
*
77486992 AAATATTGGTAAATCATTAA
1 AAATTTTGGTAAATCATTAA
77487012 AAATTTTGGTA
1 AAATTTTGGTA
77487023 TGCCAAAATG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.45, C:0.06, G:0.10, T:0.39
Consensus pattern (20 bp):
AAATTTTGGTAAATCATTAA
Found at i:77498079 original size:16 final size:16
Alignment explanation
Indices: 77498058--77498089 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
77498048 AATTAATTTA
*
77498058 AATTAATTAATTTTCC
1 AATTAAATAATTTTCC
77498074 AATTAAATAATTTTCC
1 AATTAAATAATTTTCC
77498090 CAACTCAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.12, G:0.00, T:0.47
Consensus pattern (16 bp):
AATTAAATAATTTTCC
Found at i:77501121 original size:30 final size:30
Alignment explanation
Indices: 77501077--77501139 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
77501067 ACTTAACAAG
77501077 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
* *
77501107 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
77501137 CAA
1 CAA
77501140 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.57, C:0.14, G:0.03, T:0.25
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:77504575 original size:102 final size:97
Alignment explanation
Indices: 77504260--77504620 Score: 314
Period size: 96 Copynumber: 3.7 Consensus size: 97
77504250 GCTAGCACCA
* * *
77504260 AGTACAATTTTCGGCTCCCAATG--TTTTTTTTTACTTT-AGAGCACTGATGGCTGGCACCAGTG
1 AGTACAATTTTCGGCTCCCAATGCATTTTTTTTTACTTTGA-AACACTGATGG-TAGCAACAGTG
** *
77504322 TATTTTTATTAAAAAAAAATTTTTGGATGCCAG-C
64 TATTTTTATT-AAAAAAAATTGGTGCATGCCAGCC
* * * *
77504356 -GTTCAATTTTCGGCTCCCAATGCATTTTCTTTTACTTTGGAACACTGATGGTCG-AACAAGTGT
1 AGTACAATTTTCGGCTCCCAATGCATTTTTTTTTACTTTGAAACACTGATGGTAGCAAC-AGTGT
** **
77504419 ATTTAAAAAAAAAGAAAATTTGGGTGC-TG---GCC
65 ATTTTTATTAAAA-AAAA-TT-GGTGCATGCCAGCC
* * * * *
77504451 ATTATAATTTTTGGCTCCCAATGCATTTTTTTTTACTTTGAAACTCTGATGGTTAGCATCAGTGT
1 AGTACAATTTTCGGCTCCCAATGCATTTTTTTTTACTTTGAAACACTGATGG-TAGCAACAGTGT
*
77504516 ATTTTTATTAAAAAAAATTGGTACATGGCCAGCACC
65 ATTTTTATTAAAAAAAATTGGTGCAT-GCCAG--CC
* *
77504552 AAGTACAATTTTTGGCTCCCAATGCATTTTTTTTTACTTTGGAACACTGATGGGT-G-AACTAGT
1 -AGTACAATTTTCGGCTCCCAATGCATTTTTTTTTACTTTGAAACACTGAT-GGTAGCAAC-AGT
77504615 GTATTT
63 GTATTT
77504621 AAAAAAAAAA
Statistics
Matches: 212, Mismatches: 32, Indels: 37
0.75 0.11 0.13
Matches are distributed among these distances:
94 5 0.02
95 31 0.15
96 65 0.31
97 43 0.20
98 4 0.02
99 1 0.00
100 2 0.01
101 12 0.06
102 47 0.22
103 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.39
Consensus pattern (97 bp):
AGTACAATTTTCGGCTCCCAATGCATTTTTTTTTACTTTGAAACACTGATGGTAGCAACAGTGTA
TTTTTATTAAAAAAAATTGGTGCATGCCAGCC
Found at i:77504603 original size:198 final size:191
Alignment explanation
Indices: 77504265--77504629 Score: 493
Period size: 198 Copynumber: 1.9 Consensus size: 191
77504255 CACCAAGTAC
* *
77504265 AATTTTCGGCTCCCAATGTTTTTTTTTACTTTAGAGCACTGATGGCTGGCACCAGTGTATTTTTA
1 AATTTTCGGCTCCCAATGTTTTTTTTTACTTTAGAACACTGATGGCTAGCACCAGTGTATTTTTA
** ** *
77504330 TTAAAAAAAAATTTTTGGATGCCAGCGTTCAATTTTCGGCTCCCAATGCATTTTCTTTTACTTTG
66 TTAAAAAAAAATTGGTACATGCCAGCGTACAATTTTCGGCTCCCAATGCATTTTCTTTTACTTTG
77504395 GAACACTGAT-GGTCGAACAAGTGTATTTAAAAAAAAAGAAAATTTGGGTGCTGGCCATTAT
131 GAACACTGATGGGT-GAACAAGTGTATTTAAAAAAAAAGAAAATTTGGGTGCTGGCCATTAT
* * * *
77504456 AATTTTTGGCTCCCAATGCATTTTTTTTTACTTT-GAAACTCTGATGGTTAGCATCAGTGTATTT
1 AATTTTCGGCTCCCAATG--TTTTTTTTTACTTTAG-AACACTGATGGCTAGCACCAGTGTATTT
* *
77504520 TTATT-AAAAAAAATTGGTACATGGCCAGCACCAAGTACAATTTTTGGCTCCCAATGCATTTTTT
63 TTATTAAAAAAAAATTGGTACAT-GCCAG---C--GTACAATTTTCGGCTCCCAATGCATTTTCT
*
77504584 TTTACTTTGGAACACTGATGGGTGAACTAGTGTATTTAAAAAAAAA
122 TTTACTTTGGAACACTGATGGGTGAACAAGTGTATTTAAAAAAAAA
77504630 ATTTGAGTGC
Statistics
Matches: 150, Mismatches: 14, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
191 17 0.11
192 14 0.09
193 47 0.31
196 1 0.01
198 68 0.45
199 3 0.02
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (191 bp):
AATTTTCGGCTCCCAATGTTTTTTTTTACTTTAGAACACTGATGGCTAGCACCAGTGTATTTTTA
TTAAAAAAAAATTGGTACATGCCAGCGTACAATTTTCGGCTCCCAATGCATTTTCTTTTACTTTG
GAACACTGATGGGTGAACAAGTGTATTTAAAAAAAAAGAAAATTTGGGTGCTGGCCATTAT
Found at i:77506336 original size:19 final size:19
Alignment explanation
Indices: 77506314--77506360 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
77506304 GTATAAGATC
77506314 TATTTTCCTTTTTTATTTT
1 TATTTTCCTTTTTTATTTT
* *
77506333 TATTTTTC-TCTTTATTTT
1 TATTTTCCTTTTTTATTTT
*
77506351 T-TCTTCCTTT
1 TATTTTCCTTT
77506361 CGAAACTATT
Statistics
Matches: 22, Mismatches: 5, Indels: 3
0.73 0.17 0.10
Matches are distributed among these distances:
17 4 0.18
18 11 0.50
19 7 0.32
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.77
Consensus pattern (19 bp):
TATTTTCCTTTTTTATTTT
Found at i:77507018 original size:3 final size:3
Alignment explanation
Indices: 77507012--77507051 Score: 62
Period size: 3 Copynumber: 13.0 Consensus size: 3
77507002 TTTAGTGTTG
*
77507012 TTA TTA TTA TTA TTA TTA TTA TTA CTA TTAA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
77507052 GTTTCATTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
3 31 0.91
4 3 0.09
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:77510552 original size:21 final size:21
Alignment explanation
Indices: 77510502--77510721 Score: 104
Period size: 22 Copynumber: 9.4 Consensus size: 21
77510492 CAACTAAATG
* *
77510502 AAATGAGAAAAAA-ATAAATCT
1 AAATGAAAAAAAAGAT-AATTT
77510523 AAATGGAAAAAAAAGATAATTTAAAT
1 AAAT-GAAAAAAAAGATAA-TT---T
*
77510549 GAAATGAGAAAAAAAACATTAAATTT
1 -AAAT--GAAAAAAAAGA-T-AATTT
*
77510575 AAATGGAAAAAAAGATAATTT
1 AAATGAAAAAAAAGATAATTT
* *
77510596 AAATGAAATGAGAAAAAAATAAATTA
1 AAATG-AA--A-AAAAAGAT-AATTT
* *
77510622 AAATGGAAAGAAAGATAATTT
1 AAATGAAAAAAAAGATAATTT
77510643 AAATGAAAAGAAAAAGAAATTAAATTT
1 AAATG-AAA-AAAAAG--A-T-AATTT
*
77510670 AAATGAAATGAGAAAA-A-AAATT
1 AAATGAAA--A-AAAAGATAATTT
77510692 AAATGAAAAAAAAAGATAATTT
1 AAATG-AAAAAAAAGATAATTT
77510714 AAATGAAA
1 AAATGAAA
77510722 TGGACATGAA
Statistics
Matches: 156, Mismatches: 17, Indels: 52
0.69 0.08 0.23
Matches are distributed among these distances:
20 4 0.03
21 28 0.18
22 38 0.24
23 21 0.13
24 1 0.01
25 14 0.09
26 15 0.10
27 16 0.10
28 14 0.09
29 3 0.02
30 2 0.01
ACGTcount: A:0.65, C:0.01, G:0.12, T:0.21
Consensus pattern (21 bp):
AAATGAAAAAAAAGATAATTT
Found at i:77510553 original size:27 final size:26
Alignment explanation
Indices: 77510523--77510689 Score: 136
Period size: 25 Copynumber: 6.5 Consensus size: 26
77510513 AAATAAATCT
77510523 AAATGGAAAAAAAAGATAATTTAAATG
1 AAATGGAAAAAAAA-ATAATTTAAATG
* *
77510550 AAAT-GAGAAAAAAAA-CA-TTAAATTT
1 AAATGGA-AAAAAAAATAATTTAAA-TG
*
77510575 AAATGGAAAAAAAGATAATTTAAATG
1 AAATGGAAAAAAAAATAATTTAAATG
* *
77510601 AAAT-GAGAAAAAAATAAATT--A--
1 AAATGGAAAAAAAAATAATTTAAATG
* *
77510622 AAATGGAAAGAAAGATAATTTAAATG
1 AAATGGAAAAAAAAATAATTTAAATG
* *
77510648 AAA-AGAAAAAGAAATTAAATTTAAATG
1 AAATGGAAAAA-AAAAT-AATTTAAATG
77510675 AAATGAGAAAAAAAA
1 AAATG-GAAAAAAAA
77510690 TTAAATGAAA
Statistics
Matches: 109, Mismatches: 17, Indels: 27
0.71 0.11 0.18
Matches are distributed among these distances:
21 4 0.04
22 12 0.11
23 1 0.01
24 6 0.06
25 31 0.28
26 17 0.16
27 29 0.27
28 3 0.03
29 6 0.06
ACGTcount: A:0.65, C:0.01, G:0.13, T:0.21
Consensus pattern (26 bp):
AAATGGAAAAAAAAATAATTTAAATG
Found at i:77510574 original size:30 final size:27
Alignment explanation
Indices: 77510523--77510689 Score: 110
Period size: 27 Copynumber: 6.5 Consensus size: 27
77510513 AAATAAATCT
*
77510523 AAATGGAAAAAAAAGATAATTTAAATG
1 AAATGGAAAAAAAACATAATTTAAATG
*
77510550 AAATGAGAAAAAAAAC---A-TTAAATTT
1 AAATG-GAAAAAAAACATAATTTAAA-TG
*
77510575 AAATGG-AAAAAAAGATAATTTAAATG
1 AAATGGAAAAAAAACATAATTTAAATG
* *
77510601 AAAT-GAGAAAAAA-ATAAATT--A--
1 AAATGGAAAAAAAACATAATTTAAATG
* *
77510622 AAATGG-AAAGAAAGATAATTTAAATG
1 AAATGGAAAAAAAACATAATTTAAATG
* *
77510648 AAA-AGAAAAAGAAA-TTAAATTTAAATG
1 AAATGGAAAAA-AAACAT-AATTTAAATG
77510675 AAATGAGAAAAAAAA
1 AAATG-GAAAAAAAA
77510690 TTAAATGAAA
Statistics
Matches: 109, Mismatches: 13, Indels: 35
0.69 0.08 0.22
Matches are distributed among these distances:
21 9 0.08
22 7 0.06
23 8 0.07
24 7 0.06
25 15 0.14
26 19 0.17
27 26 0.24
28 12 0.11
29 6 0.06
ACGTcount: A:0.65, C:0.01, G:0.13, T:0.21
Consensus pattern (27 bp):
AAATGGAAAAAAAACATAATTTAAATG
Found at i:77510637 original size:47 final size:48
Alignment explanation
Indices: 77510496--77510674 Score: 256
Period size: 47 Copynumber: 3.7 Consensus size: 48
77510486 TATATTCAAC
*
77510496 TAAATGAAATGAGAAAAAAA-TAAATCTAAATGGAAAAAAAAGATAATT
1 TAAATGAAATGAGAAAAAAATTAAATTTAAATGG-AAAAAAAGATAATT
77510544 TAAATGAAATGAGAAAAAAAACATTAAATTTAAATGGAAAAAAAGATAATT
1 TAAATGAAATGAG--AAAAAA-ATTAAATTTAAATGGAAAAAAAGATAATT
* *
77510595 TAAATGAAATGAGAAAAAAA-TAAATTAAAATGGAAAGAAAGATAATT
1 TAAATGAAATGAGAAAAAAATTAAATTTAAATGGAAAAAAAGATAATT
*
77510642 TAAATGAAAAGA-AAAAGAAATTAAATTTAAATG
1 TAAATGAAATGAGAAAA-AAATTAAATTTAAATG
77510675 AAATGAGAAA
Statistics
Matches: 120, Mismatches: 5, Indels: 12
0.88 0.04 0.09
Matches are distributed among these distances:
46 4 0.03
47 39 0.32
48 25 0.21
49 6 0.05
50 6 0.05
51 28 0.23
52 12 0.10
ACGTcount: A:0.64, C:0.01, G:0.13, T:0.22
Consensus pattern (48 bp):
TAAATGAAATGAGAAAAAAATTAAATTTAAATGGAAAAAAAGATAATT
Found at i:77510695 original size:17 final size:16
Alignment explanation
Indices: 77510643--77510705 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
77510633 AAGATAATTT
77510643 AAATGAAAAGAAAAA-G
1 AAATGAAAA-AAAAATG
* ***
77510659 AAATTAAATTTAAATG
1 AAATGAAAAAAAAATG
*
77510675 AAATGAGAAAAAAAATT
1 AAATGA-AAAAAAAATG
77510692 AAATGAAAAAAAAA
1 AAATGAAAAAAAAA
77510706 GATAATTTAA
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
15 3 0.08
16 21 0.58
17 12 0.33
ACGTcount: A:0.71, C:0.00, G:0.11, T:0.17
Consensus pattern (16 bp):
AAATGAAAAAAAAATG
Found at i:77510719 original size:22 final size:22
Alignment explanation
Indices: 77510502--77510721 Score: 128
Period size: 21 Copynumber: 9.4 Consensus size: 22
77510492 CAACTAAATG
* * *
77510502 AAATGAGAAAAAAATA-AATCT
1 AAATGAAAAAAAAAGATAATTT
*
77510523 AAATGGAAAAAAAAGATAATTTAAAT
1 AAATGAAAAAAAAAGATAA-TT---T
*
77510549 GAAATGAGAAAAAAAACATTAAATTT
1 -AAATGA-AAAAAAAAGA-T-AATTT
*
77510575 AAATG-GAAAAAAAGATAATTT
1 AAATGAAAAAAAAAGATAATTT
* *
77510596 AAATGAAATGAGAAAAAAATAAATTA
1 AAATGAAA--A-AAAAAGAT-AATTT
* *
77510622 AAATG-GAAAGAAAGATAATTT
1 AAATGAAAAAAAAAGATAATTT
77510643 AAATGAAAAGAAAAAGAAATTAAATTT
1 AAATGAAAA-AAAAAG--A-T-AATTT
77510670 AAATGAAATGAGAAAAA-A-AA-TT
1 AAATGAAA--A-AAAAAGATAATTT
77510692 AAATGAAAAAAAAAGATAATTT
1 AAATGAAAAAAAAAGATAATTT
77510714 AAATGAAA
1 AAATGAAA
77510722 TGGACATGAA
Statistics
Matches: 157, Mismatches: 17, Indels: 49
0.70 0.08 0.22
Matches are distributed among these distances:
19 5 0.03
20 2 0.01
21 34 0.22
22 32 0.20
23 17 0.11
24 1 0.01
25 14 0.09
26 13 0.08
27 18 0.11
28 9 0.06
29 10 0.06
30 2 0.01
ACGTcount: A:0.65, C:0.01, G:0.12, T:0.21
Consensus pattern (22 bp):
AAATGAAAAAAAAAGATAATTT
Found at i:77510722 original size:5 final size:5
Alignment explanation
Indices: 77510714--77510785 Score: 56
Period size: 5 Copynumber: 13.6 Consensus size: 5
77510704 AAGATAATTT
* * *
77510714 AAATG AAATGG ACATG AAAATGG AAATG AAATGG AAATAC AAATG GAATG
1 AAATG AAAT-G AAATG -AAAT-G AAATG AAAT-G AAAT-G AAATG AAATG
*
77510764 AAATG GAA-G AAATG AAATG AAA
1 AAATG AAATG AAATG AAATG AAA
77510786 AAAAGAAGAA
Statistics
Matches: 53, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
4 3 0.06
5 29 0.55
6 20 0.38
7 1 0.02
ACGTcount: A:0.57, C:0.03, G:0.24, T:0.17
Consensus pattern (5 bp):
AAATG
Found at i:77510734 original size:44 final size:48
Alignment explanation
Indices: 77510545--77510723 Score: 132
Period size: 47 Copynumber: 3.9 Consensus size: 48
77510535 AAGATAATTT
* * *
77510545 AAATGAAATGAGAAA-AAAAA-CATTAAATTTAAATGGAAA--A-AAAGAT
1 AAATTAAATGA-AAAGAAAAAGAATTAAATTTAAAT-GAAATGAGAAA-AA
* * * *
77510591 AATTTAAATGAAATGAGAAAAA-AA-TAAATTAAAATGGAAA-GA-AAGAT
1 AAATTAAATGAAA--AGAAAAAGAATTAAATTTAAAT-GAAATGAGAAAAA
*
77510638 AATTTAAATGAAAAGAAAAAGAAATTAAATTTAAATGAAATGAGAAAAA
1 AAATTAAATGAAAAGAAAAAG-AATTAAATTTAAATGAAATGAGAAAAA
77510687 AAATTAAATGAAAA-AAAAAG-A-T-AATTTAAATGAAATG
1 AAATTAAATGAAAAGAAAAAGAATTAAATTTAAATGAAATG
77510724 GACATGAAAA
Statistics
Matches: 115, Mismatches: 9, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
44 15 0.13
45 10 0.09
46 10 0.09
47 37 0.32
48 27 0.23
49 16 0.14
ACGTcount: A:0.65, C:0.01, G:0.13, T:0.22
Consensus pattern (48 bp):
AAATTAAATGAAAAGAAAAAGAATTAAATTTAAATGAAATGAGAAAAA
Found at i:77510736 original size:12 final size:11
Alignment explanation
Indices: 77510714--77510785 Score: 80
Period size: 11 Copynumber: 6.7 Consensus size: 11
77510704 AAGATAATTT
77510714 AAATGAAATGG
1 AAATGAAATGG
*
77510725 ACATGAAAATGG
1 AAATG-AAATGG
77510737 AAATGAAATGG
1 AAATGAAATGG
*
77510748 AAATACAAATGG
1 AAAT-GAAATGG
77510760 -AATGAAATGG
1 AAATGAAATGG
77510770 -AA-GAAAT-G
1 AAATGAAATGG
77510778 AAATGAAA
1 AAATGAAA
77510786 AAAAGAAGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
8 1 0.02
9 7 0.13
10 12 0.23
11 17 0.32
12 16 0.30
ACGTcount: A:0.57, C:0.03, G:0.24, T:0.17
Consensus pattern (11 bp):
AAATGAAATGG
Found at i:77510744 original size:23 final size:22
Alignment explanation
Indices: 77510714--77510785 Score: 82
Period size: 23 Copynumber: 3.4 Consensus size: 22
77510704 AAGATAATTT
77510714 AAATGAAATGGACATGAAAATGG
1 AAATGAAATGGA-ATGAAAATGG
77510737 AAATGAAATGGAAAT-ACAAATGG
1 AAATGAAATGG-AATGA-AAATGG
77510760 -AATGAAATGGAA-G-AAAT-G
1 AAATGAAATGGAATGAAAATGG
77510778 AAATGAAA
1 AAATGAAA
77510786 AAAAGAAGAA
Statistics
Matches: 45, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
18 1 0.02
19 11 0.24
21 2 0.04
22 11 0.24
23 19 0.42
24 1 0.02
ACGTcount: A:0.57, C:0.03, G:0.24, T:0.17
Consensus pattern (22 bp):
AAATGAAATGGAATGAAAATGG
Found at i:77510750 original size:6 final size:6
Alignment explanation
Indices: 77510714--77510771 Score: 52
Period size: 6 Copynumber: 10.3 Consensus size: 6
77510704 AAGATAATTT
* * **
77510714 AAAT-G AAATGG ACATGA AAATGG AAAT-G AAATGG AAATAC AAATGG
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG
77510760 -AAT-G AAATGG AA
1 AAATGG AAATGG AA
77510772 GAAATGAAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
4 1 0.02
5 15 0.37
6 25 0.61
ACGTcount: A:0.55, C:0.03, G:0.24, T:0.17
Consensus pattern (6 bp):
AAATGG
Found at i:77511114 original size:15 final size:15
Alignment explanation
Indices: 77511072--77511102 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
77511062 AAAAAATATT
77511072 AAATGAATTGAAAAA
1 AAATGAATTGAAAAA
77511087 AAATGAATTGAAAAA
1 AAATGAATTGAAAAA
77511102 A
1 A
77511103 GATAATTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.13, T:0.19
Consensus pattern (15 bp):
AAATGAATTGAAAAA
Found at i:77511256 original size:21 final size:22
Alignment explanation
Indices: 77511222--77511270 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
77511212 AAAAACGTAA
*
77511222 ATTAAAATGGAAAGAAAGATAAT
1 ATTAAAATGAAAAGAAA-ATAAT
*
77511245 -TTAAAA-GAAAAGAGAATAAT
1 ATTAAAATGAAAAGAAAATAAT
77511265 ATTAAA
1 ATTAAA
77511271 TTTAAATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 5 0.22
21 12 0.52
22 6 0.26
ACGTcount: A:0.63, C:0.00, G:0.14, T:0.22
Consensus pattern (22 bp):
ATTAAAATGAAAAGAAAATAAT
Found at i:77511321 original size:47 final size:46
Alignment explanation
Indices: 77511269--77511469 Score: 262
Period size: 47 Copynumber: 4.3 Consensus size: 46
77511259 AATAATATTA
* * **
77511269 AATTTAAATAAAATAAGAAAAAAATAAATTAAAATGGAAAGAAAGGC
1 AATTTAAATGAAATGAGAAAAAAATAAATTAAAATGGAAA-AAAGAT
*
77511316 AATTTAAACGAAATGAGAAAAAAATAAAATT-AAATGGAAAAAAGAT
1 AATTTAAATGAAATGAGAAAAAAAT-AAATTAAAATGGAAAAAAGAT
* * *
77511362 AATTTAAATGAAATGAGAAAAAAATTAATTAAAATGGGAAGAAATAT
1 AATTTAAATGAAATGAGAAAAAAATAAATTAAAAT-GGAAAAAAGAT
* *
77511409 AATTTAAATGAAATGAGAAAAAAATAAATTTAAATGGGAAAAA-AT
1 AATTTAAATGAAATGAGAAAAAAATAAATTAAAATGGAAAAAAGAT
*
77511454 AATTTAAATAAAATGA
1 AATTTAAATGAAATGA
77511470 AAATGGAAAT
Statistics
Matches: 137, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
45 21 0.15
46 38 0.28
47 73 0.53
48 5 0.04
ACGTcount: A:0.63, C:0.01, G:0.13, T:0.23
Consensus pattern (46 bp):
AATTTAAATGAAATGAGAAAAAAATAAATTAAAATGGAAAAAAGAT
Found at i:77511351 original size:21 final size:21
Alignment explanation
Indices: 77511326--77511452 Score: 78
Period size: 21 Copynumber: 5.6 Consensus size: 21
77511316 AATTTAAACG
77511326 AAATGAGAAAAAAATAAAATT
1 AAATGAGAAAAAAATAAAATT
*
77511347 AAATG-GAAAAAAGATAATTTAAATG
1 AAATGAGAAAAAA-AT-A---AAATT
*
77511372 AAATGAGAAAAAAAT-TAATT
1 AAATGAGAAAAAAATAAAATT
* * *
77511392 AAAATGGGAAGAAATATAATTTAAATG
1 -AAAT--G-AGAAA-A-AAATAAAATT
*
77511419 AAATGAGAAAAAAATAAATTT
1 AAATGAGAAAAAAATAAAATT
*
77511440 AAATGGGAAAAAA
1 AAATGAGAAAAAA
77511453 TAATTTAAAT
Statistics
Matches: 82, Mismatches: 11, Indels: 26
0.69 0.09 0.22
Matches are distributed among these distances:
20 10 0.12
21 29 0.35
22 2 0.02
23 6 0.07
24 6 0.07
25 12 0.15
26 14 0.17
27 3 0.04
ACGTcount: A:0.64, C:0.00, G:0.14, T:0.22
Consensus pattern (21 bp):
AAATGAGAAAAAAATAAAATT
Found at i:77511382 original size:93 final size:92
Alignment explanation
Indices: 77511269--77511469 Score: 303
Period size: 93 Copynumber: 2.2 Consensus size: 92
77511259 AATAATATTA
* *
77511269 AATTTAAATAAAATAAGAAAAAAATAAATTAAAATGGAAAGAAAGGCAATTTAAACGAAATGAGA
1 AATTTAAATAAAATGAGAAAAAAATAAATTAAAATGGAAAGAAAGACAATTTAAACGAAATGAGA
77511334 AAAAAATAAAATTAAATGGAAAAAAGAT
66 AAAAAATAAAATTAAATGGAAAAAA-AT
* * * * * *
77511362 AATTTAAATGAAATGAGAAAAAAATTAATTAAAATGGGAAGAAATATAATTTAAATGAAATGAGA
1 AATTTAAATAAAATGAGAAAAAAATAAATTAAAATGGAAAGAAAGACAATTTAAACGAAATGAGA
* *
77511427 AAAAAATAAATTTAAATGGGAAAAAAT
66 AAAAAATAAAATTAAATGGAAAAAAAT
77511454 AATTTAAATAAAATGA
1 AATTTAAATAAAATGA
77511470 AAATGGAAAT
Statistics
Matches: 97, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
92 17 0.18
93 80 0.82
ACGTcount: A:0.63, C:0.01, G:0.13, T:0.23
Consensus pattern (92 bp):
AATTTAAATAAAATGAGAAAAAAATAAATTAAAATGGAAAGAAAGACAATTTAAACGAAATGAGA
AAAAAATAAAATTAAATGGAAAAAAAT
Found at i:77511443 original size:26 final size:26
Alignment explanation
Indices: 77511226--77511444 Score: 118
Period size: 26 Copynumber: 9.0 Consensus size: 26
77511216 ACGTAAATTA
*
77511226 AAATG-GAAAGAAAGAT-AATTTAAAAG
1 AAATGAGAAA-AAA-ATAAATTTAAATG
* * * *
77511252 AAAAGAGAATAATATTAAATTTAAATA
1 AAATGAGAA-AAAAATAAATTTAAATG
*
77511279 AAATAAGAAAAAAATAAA-TT--A--
1 AAATGAGAAAAAAATAAATTTAAATG
*** *
77511300 AAATG-GAAAGAAAGGCAATTTAAACG
1 AAATGAGAAA-AAAATAAATTTAAATG
*
77511326 AAATGAGAAAAAAATAAAATTAAATG
1 AAATGAGAAAAAAATAAATTTAAATG
*
77511352 ----GA-AAAAAGAT-AATTTAAATG
1 AAATGAGAAAAAAATAAATTTAAATG
*
77511372 AAATGAGAAAAAAATTAA-TT--A--
1 AAATGAGAAAAAAATAAATTTAAATG
* *
77511393 AAATG-GGAAGAAATATAATTTAAATG
1 AAATGAGAAAAAAATA-AATTTAAATG
77511419 AAATGAGAAAAAAATAAATTTAAATG
1 AAATGAGAAAAAAATAAATTTAAATG
77511445 GGAAAAAATA
Statistics
Matches: 144, Mismatches: 26, Indels: 46
0.67 0.12 0.21
Matches are distributed among these distances:
20 20 0.14
21 23 0.16
22 6 0.04
23 2 0.01
24 4 0.03
25 11 0.08
26 45 0.31
27 32 0.22
28 1 0.01
ACGTcount: A:0.63, C:0.01, G:0.14, T:0.22
Consensus pattern (26 bp):
AAATGAGAAAAAAATAAATTTAAATG
Found at i:77511472 original size:21 final size:22
Alignment explanation
Indices: 77511316--77511469 Score: 73
Period size: 21 Copynumber: 6.7 Consensus size: 22
77511306 AAAGAAAGGC
**
77511316 AATTTAAACGAAATGAGAAAA-
1 AATTTAAATAAAATGAGAAAAT
* * * *
77511337 AAATAAAATTAAATGGAAAAAAGAT
1 AATTTAAATAAAAT-G-AGAAA-AT
*
77511362 AATTTAAATGAAATGAGAAAA-
1 AATTTAAATAAAATGAGAAAAT
* *
77511383 AAATTAATTAAAATGGGAAGAAATAT
1 AATTTAAATAAAAT--G-AGAAA-AT
*
77511409 AATTTAAATGAAATGAGAAAA-
1 AATTTAAATAAAATGAGAAAAT
* * *
77511430 AA-ATAAATTTAAATGGGAAAAAAT
1 AATTTAAA-TAAAAT--GAGAAAAT
77511454 AATTTAAATAAAATGA
1 AATTTAAATAAAATGA
77511470 AAATGGAAAT
Statistics
Matches: 99, Mismatches: 20, Indels: 27
0.68 0.14 0.18
Matches are distributed among these distances:
20 4 0.04
21 28 0.28
22 5 0.05
23 20 0.20
24 15 0.15
25 16 0.16
26 11 0.11
ACGTcount: A:0.62, C:0.01, G:0.13, T:0.24
Consensus pattern (22 bp):
AATTTAAATAAAATGAGAAAAT
Found at i:77511491 original size:5 final size:5
Alignment explanation
Indices: 77511459--77511595 Score: 105
Period size: 5 Copynumber: 25.6 Consensus size: 5
77511449 AAAATAATTT
* *
77511459 AAATA AAATG AAAATGG AAATGG AAATG AAATG AAATGG AAATAC AAATG
1 AAATG AAATG -AAAT-G AAAT-G AAATG AAATG AAAT-G AAAT-G AAATG
* * *
77511509 GAATG AAATGG AAATG AAATG AAATGG AAATAC AAATG GAATG AAATG
1 AAATG AAAT-G AAATG AAATG AAAT-G AAAT-G AAATG AAATG AAATG
* * *
77511557 GAA-G AAATA AAATG AAATGG AAATAA AAATG AAATG AAA
1 AAATG AAATG AAATG AAAT-G AAAT-G AAATG AAATG AAA
77511596 AAAAAAAGAA
Statistics
Matches: 107, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
4 3 0.03
5 57 0.53
6 46 0.43
7 1 0.01
ACGTcount: A:0.60, C:0.01, G:0.21, T:0.18
Consensus pattern (5 bp):
AAATG
Found at i:77511498 original size:22 final size:21
Alignment explanation
Indices: 77511459--77511595 Score: 125
Period size: 22 Copynumber: 6.4 Consensus size: 21
77511449 AAAATAATTT
*
77511459 AAATAAAATGAAAATGGAAATGG
1 AAATGAAATG-AAATGGAAAT-G
*
77511482 AAATGAAATGAAATGGAAATAC
1 AAATGAAATGAAATGGAAAT-G
*
77511504 AAATGGAATGAAATGGAAATG
1 AAATGAAATGAAATGGAAATG
**
77511525 AAATGAAATGGAAATACAAATG
1 AAATGAAAT-GAAATGGAAATG
* * *
77511547 GAATGAAATGGAA--GAAATA
1 AAATGAAATGAAATGGAAATG
**
77511566 AAATGAAATGGAAATAAAAATG
1 AAATGAAAT-GAAATGGAAATG
77511588 AAATGAAA
1 AAATGAAA
77511596 AAAAAAAGAA
Statistics
Matches: 94, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
19 12 0.13
20 3 0.03
21 11 0.12
22 59 0.63
23 9 0.10
ACGTcount: A:0.60, C:0.01, G:0.21, T:0.18
Consensus pattern (21 bp):
AAATGAAATGAAATGGAAATG
Found at i:77511520 original size:38 final size:38
Alignment explanation
Indices: 77511475--77511595 Score: 188
Period size: 38 Copynumber: 3.1 Consensus size: 38
77511465 AATGAAAATG
77511475 GAAATGGAAATGAAATGAAATGGAAATACAAATGGAAT
1 GAAATGGAAATGAAATGAAATGGAAATACAAATGGAAT
77511513 GAAATGGAAATGAAATGAAATGGAAATACAAATGGAAT
1 GAAATGGAAATGAAATGAAATGGAAATACAAATGGAAT
* * *
77511551 GAAATGGAAGAAATAAAATGAAATGGAAATAAAAATGAAAT
1 GAAAT-G--GAAATGAAATGAAATGGAAATACAAATGGAAT
77511592 GAAA
1 GAAA
77511596 AAAAAAAGAA
Statistics
Matches: 77, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
38 43 0.56
39 1 0.01
41 33 0.43
ACGTcount: A:0.59, C:0.02, G:0.22, T:0.17
Consensus pattern (38 bp):
GAAATGGAAATGAAATGAAATGGAAATACAAATGGAAT
Found at i:77511601 original size:17 final size:17
Alignment explanation
Indices: 77511548--77511606 Score: 66
Period size: 17 Copynumber: 3.4 Consensus size: 17
77511538 ATACAAATGG
*
77511548 AATGAAATGGAAGAAATAA
1 AATGAAAT-GAA-AAAAAA
* *
77511567 AATGAAATGGAAATAAA
1 AATGAAATGAAAAAAAA
77511584 AATGAAATGAAAAAAAA
1 AATGAAATGAAAAAAAA
77511601 AA-GAAA
1 AATGAAA
77511607 GATGAAAGGA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
16 4 0.11
17 21 0.60
18 2 0.06
19 8 0.23
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.14
Consensus pattern (17 bp):
AATGAAATGAAAAAAAA
Found at i:77511687 original size:29 final size:29
Alignment explanation
Indices: 77511625--77511689 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
77511615 GACATTGCAG
* * *
77511625 CAGGCCTGGGAATAAGTTGTCAGCACTAG
1 CAGGCCTGGGAATAAGTGGTCAGCACCAA
* * *
77511654 TAGGCCTGGGAATCAGTGGTCGGCACCAA
1 CAGGCCTGGGAATAAGTGGTCAGCACCAA
77511683 CAGGCCT
1 CAGGCCT
77511690 AGTGCCTAGG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.25, C:0.25, G:0.32, T:0.18
Consensus pattern (29 bp):
CAGGCCTGGGAATAAGTGGTCAGCACCAA
Found at i:77512026 original size:5 final size:5
Alignment explanation
Indices: 77512016--77512102 Score: 61
Period size: 5 Copynumber: 16.4 Consensus size: 5
77512006 GAAAAAAATT
* *
77512016 AATGA AATGA AATGTTA AATGA ATATGA AATGA AATGTA ATTTGT AATGA
1 AATGA AATGA AATG--A AATGA A-ATGA AATGA AATG-A A-ATGA AATGA
* *
77512066 ATATGA AATGA AATG- -ATGA TTATGA AATGG AATGA AA
1 A-ATGA AATGA AATGA AATGA -AATGA AATGA AATGA AA
77512103 GTTTAAATGA
Statistics
Matches: 66, Mismatches: 7, Indels: 18
0.73 0.08 0.20
Matches are distributed among these distances:
3 3 0.05
5 39 0.59
6 17 0.26
7 7 0.11
ACGTcount: A:0.51, C:0.00, G:0.20, T:0.30
Consensus pattern (5 bp):
AATGA
Found at i:77512037 original size:12 final size:11
Alignment explanation
Indices: 77512016--77512081 Score: 50
Period size: 11 Copynumber: 6.0 Consensus size: 11
77512006 GAAAAAAATT
77512016 AATG-AAATGA
1 AATGTAAATGA
77512026 AATGTTAAATGA
1 AATG-TAAATGA
77512038 ATATG-AAATGA
1 A-ATGTAAATGA
* *
77512049 AATGTAATTTGT
1 AATGTAA-ATGA
77512061 AATG-AATATGA
1 AATGTAA-ATGA
77512072 AATG-AAATGA
1 AATGTAAATGA
77512082 TGATTATGAA
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
10 11 0.23
11 20 0.43
12 13 0.28
13 3 0.06
ACGTcount: A:0.52, C:0.00, G:0.18, T:0.30
Consensus pattern (11 bp):
AATGTAAATGA
Found at i:77512052 original size:28 final size:28
Alignment explanation
Indices: 77512016--77512081 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
77512006 GAAAAAAATT
77512016 AATGAAATGAAATGTT-AAATGAATATGA
1 AATGAAATGAAAT-TTGAAATGAATATGA
* *
77512044 AATGAAATGTAATTTGTAATGAATATGA
1 AATGAAATGAAATTTGAAATGAATATGA
77512072 AATGAAATGA
1 AATGAAATGA
77512082 TGATTATGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 2 0.06
28 32 0.94
ACGTcount: A:0.52, C:0.00, G:0.18, T:0.30
Consensus pattern (28 bp):
AATGAAATGAAATTTGAAATGAATATGA
Found at i:77512089 original size:19 final size:19
Alignment explanation
Indices: 77512062--77512100 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
77512052 GTAATTTGTA
77512062 ATGAATATGAAATGAAATG
1 ATGAATATGAAATGAAATG
* *
77512081 ATGATTATGAAATGGAATG
1 ATGAATATGAAATGAAATG
77512100 A
1 A
77512101 AAGTTTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.23, T:0.28
Consensus pattern (19 bp):
ATGAATATGAAATGAAATG
Found at i:77512183 original size:21 final size:20
Alignment explanation
Indices: 77512159--77512215 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 20
77512149 AATGAAAAAA
77512159 AAATTGAAATGAGAAATAATT
1 AAATTGAAATG-GAAATAATT
*
77512180 AAATAT-AAATGGAAAAAAATT
1 AAAT-TGAAATGG-AAATAATT
77512201 AAA-TGAAATGGAAAT
1 AAATTGAAATGGAAAT
77512216 GTAAATGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
19 4 0.13
20 7 0.23
21 19 0.61
22 1 0.03
ACGTcount: A:0.61, C:0.00, G:0.14, T:0.25
Consensus pattern (20 bp):
AAATTGAAATGGAAATAATT
Found at i:77516076 original size:43 final size:42
Alignment explanation
Indices: 77515978--77516141 Score: 188
Period size: 43 Copynumber: 3.9 Consensus size: 42
77515968 TAGGGTTACC
77515978 GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAT
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAT
* * * *
77516020 GAGATTTCCTGTAAGACCATGTCTAGGATATTGGCATCGATAT
1 GAGATTACGTGTAAGACCATATCTGGGATA-TGGCATCGATAT
* * * * *
77516063 GTGATTCCGTGTAAGA-CATCGGT-TGGGCTATTGACATCGATAT
1 GAGATTACGTGTAAGACCAT--ATCTGGGATA-TGGCATCGATAT
*
77516106 GAGATTACATGTAAGACCATATCTGGGATATGGCAT
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCAT
77516142 TGTTACGGTA
Statistics
Matches: 101, Mismatches: 16, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
42 35 0.35
43 61 0.60
44 5 0.05
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (42 bp):
GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAT
Found at i:77522146 original size:5 final size:6
Alignment explanation
Indices: 77522129--77522162 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
77522119 TTCTTTCTTT
77522129 ATAAAA ATAAAA ATAAAA ATAAAA AT-AAA ATAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAA
77522163 TTAAAGGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
ATAAAA
Found at i:77522152 original size:18 final size:17
Alignment explanation
Indices: 77522129--77522162 Score: 59
Period size: 17 Copynumber: 1.9 Consensus size: 17
77522119 TTCTTTCTTT
77522129 ATAAAAATAAAAATAAAA
1 ATAAAAAT-AAAATAAAA
77522147 ATAAAAATAAAATAAA
1 ATAAAAATAAAATAAA
77522163 TTAAAGGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (17 bp):
ATAAAAATAAAATAAAA
Found at i:77525733 original size:25 final size:24
Alignment explanation
Indices: 77525690--77525736 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
77525680 GAGGTGGTTC
*
77525690 TTTTTCTTTTTTGTATTTCTTTAT
1 TTTTTCTTTTCTGTATTTCTTTAT
*
77525714 TTTTTCTTTTCTGTTCTTTCTTT
1 TTTTTCTTTTCTG-TATTTCTTT
77525737 TTAATGGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.04, C:0.13, G:0.04, T:0.79
Consensus pattern (24 bp):
TTTTTCTTTTCTGTATTTCTTTAT
Found at i:77532274 original size:98 final size:98
Alignment explanation
Indices: 77532105--77532282 Score: 356
Period size: 98 Copynumber: 1.8 Consensus size: 98
77532095 AACTTTAAAA
77532105 GAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCCTTTAAAA
1 GAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCCTTTAAAA
77532170 TCCCAAACTCGGAATATTTCCTTTATTATTTTT
66 TCCCAAACTCGGAATATTTCCTTTATTATTTTT
77532203 GAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCCTTTAAAA
1 GAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCCTTTAAAA
77532268 TCCCAAACTCGGAAT
66 TCCCAAACTCGGAAT
77532283 CTATAATAAC
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
98 80 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.29
Consensus pattern (98 bp):
GAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCCTTTAAAA
TCCCAAACTCGGAATATTTCCTTTATTATTTTT
Found at i:77532299 original size:9 final size:9
Alignment explanation
Indices: 77532285--77532309 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
77532275 CTCGGAATCT
77532285 ATAATAACA
1 ATAATAACA
77532294 ATAATAACA
1 ATAATAACA
77532303 ATAATAA
1 ATAATAA
77532310 ATACATCATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (9 bp):
ATAATAACA
Found at i:77534478 original size:127 final size:127
Alignment explanation
Indices: 77534327--77534604 Score: 484
Period size: 127 Copynumber: 2.2 Consensus size: 127
77534317 ACTTACTTAG
* *
77534327 TCTGCTTCACTGCAACTTCTGGGAGATAAGACTAGATACAATCTGCTCTCTGTAACTTCAAAGAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATACAATCTGCTCTCTGTAACTTCAAAGAG
* *
77534392 ATAAGATCTGAGGTTTTAATCTGCCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAA
66 ATAAGATCCGAGGTTTTAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAA
* * * *
77534454 TCTGCTCCACTGCAACTTCAGGGAGATAAGAGTAGATGCGATCTGCTCTCTGTAACTTCAGAGAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATACAATCTGCTCTCTGTAACTTCAAAGAG
77534519 ATAAGATCCGAGGTTTTAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAA
66 ATAAGATCCGAGGTTTTAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAA
77534581 TCTGCTCCACTGCAACTTCAGGGA
1 TCTGCTCCACTGCAACTTCAGGGA
77534605 AGTAGAATTA
Statistics
Matches: 143, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
127 143 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (127 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATACAATCTGCTCTCTGTAACTTCAAAGAG
ATAAGATCCGAGGTTTTAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAA
Found at i:77534480 original size:44 final size:43
Alignment explanation
Indices: 77534035--77534604 Score: 309
Period size: 44 Copynumber: 13.3 Consensus size: 43
77534025 TCTACTCCTT
* ** * *
77534035 TGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTGC-CTCAC
1 TGCAACTTCAGGGAGATAAGA-TTAC-GGCTTTAATCTGCTC-CAC
* *** * *
77534080 TGCAACTTCA-GGAGGATAAGACTTGCTTATTTAGTCTGCTCTAC
1 TGCAACTTCAGGGA-GATAAGA-TTACGGCTTTAATCTGCTCCAC
* * *** *
77534124 TGCAACTTCAGGGAGATAAGACT--GGATGCGATCTGCT-CTC
1 TGCAACTTCAGGGAGATAAGATTACGGCTTTAATCTGCTCCAC
* * * *
77534164 TACAACTTCAGAGAGATAAGATCTAAGG-TTCTAATCCGCTCCAC
1 TGCAACTTCAGGGAGATAAGAT-TACGGCTT-TAATCTGCTCCAC
*
77534208 TGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGATTA-CGGCTTTAATCTGCTCCAC
* * * *** * *
77534252 TACAACTTCAAGGAGATAAGACTTGCCAATTTCAGTCTGCCCCAC
1 TGCAACTTCAGGGAGATAAGA-TTACGGCTTT-AATCTGCTCCAC
* * *
77534297 TGCAACTTCA-AGAGGATAAGACTTA---C-TTAGTCTGCTTCAC
1 TGCAACTTCAGGGA-GATAAGA-TTACGGCTTTAATCTGCTCCAC
* * * ** *
77534337 TGCAACTTCTGGGAGATAAGACTA--GATACAATCTGCT-CTC
1 TGCAACTTCAGGGAGATAAGATTACGGCTTTAATCTGCTCCAC
* ** *
77534377 TGTAACTTCAAAGAGATAAGATCTGA-GGTTTTAATCTGC-CCAC
1 TGCAACTTCAGGGAGATAAGAT-T-ACGGCTTTAATCTGCTCCAC
* *
77534420 TGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGATTA-CGGCTTTAATCTGCTCCAC
* * *** *
77534464 TGCAACTTCAGGGAGATAAGAGTA--GATGCGATCTGCT-CTC
1 TGCAACTTCAGGGAGATAAGATTACGGCTTTAATCTGCTCCAC
* * * * *
77534504 TGTAACTTCAGAGAGATAAGA-TCCGAGGTTTTAATCCGC-CCAC
1 TGCAACTTCAGGGAGATAAGATTAC--GGCTTTAATCTGCTCCAC
* *
77534547 TGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGATTA-CGGCTTTAATCTGCTCCAC
77534591 TGCAACTTCAGGGA
1 TGCAACTTCAGGGA
77534605 AGTAGAATTA
Statistics
Matches: 406, Mismatches: 88, Indels: 63
0.73 0.16 0.11
Matches are distributed among these distances:
39 3 0.01
40 86 0.21
41 31 0.08
42 3 0.01
43 90 0.22
44 134 0.33
45 59 0.15
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (43 bp):
TGCAACTTCAGGGAGATAAGATTACGGCTTTAATCTGCTCCAC
Found at i:77534621 original size:44 final size:44
Alignment explanation
Indices: 77534406--77534635 Score: 176
Period size: 44 Copynumber: 5.4 Consensus size: 44
77534396 GATCTGAGGT
*
77534406 TTTAATCTGC-CCACTGCAACTTCAGCGAGATAGGATTACCGGC
1 TTTAATCTGCTCCACTGCAACTTCAGCGAGATAGAATTACCGGC
* * *
77534449 TTTAATCTGCTCCACTGCAACTTCAGGGAGATA-AGAGTA---GA
1 TTTAATCTGCTCCACTGCAACTTCAGCGAGATAGA-ATTACCGGC
*** * * * *
77534490 TGCGATCTGCT-CTCTGTAACTTCAGAGAGATA-AGA-T-CCGAGGT
1 TTTAATCTGCTCCACTGCAACTTCAGCGAGATAGA-ATTACC--GGC
* *
77534533 TTTAATCCGC-CCACTGCAACTTCAGCGAGATAGGATTACCGGC
1 TTTAATCTGCTCCACTGCAACTTCAGCGAGATAGAATTACCGGC
* **
77534576 TTTAATCTGCTCCACTGCAACTTCAGGGA-AGTAGAATTATTGGC
1 TTTAATCTGCTCCACTGCAACTTCAGCGAGA-TAGAATTACCGGC
* *
77534620 TTCAATCTACTCCACT
1 TTTAATCTGCTCCACT
77534636 ATAACCACAG
Statistics
Matches: 147, Mismatches: 27, Indels: 25
0.74 0.14 0.13
Matches are distributed among these distances:
39 1 0.01
40 21 0.14
41 9 0.06
43 48 0.33
44 66 0.45
45 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (44 bp):
TTTAATCTGCTCCACTGCAACTTCAGCGAGATAGAATTACCGGC
Found at i:77534710 original size:44 final size:44
Alignment explanation
Indices: 77534662--77535120 Score: 137
Period size: 44 Copynumber: 10.4 Consensus size: 44
77534652 AAAATTCACC
* *
77534662 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAA
* * * *
77534706 ATCTTCAATCTATTCCACTATTG-TCCAGGGA-AGT-AGAAT-T-ATG
1 ATCTTCAATCTACTCCACTACTGCT-TAGGGAGA-TAAG-ATCTGA-A
** * * * * * * * **
77534749 GGCTTCAATGTGCTCCACTA-TAACCATAGGGAGGTAAAATCCGCC
1 ATCTTCAATCTACTCCACTACT--GCTTAGGGAGATAAGATCTGAA
* *
77534794 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAA
* ** *
77534838 ATCTTCAATCTATTCCACTGTTGAC-CAGGGA-AGT-AGAATTACTG--
1 ATCTTCAATCTACTCCACTACTG-CTTAGGGAGA-TAAG-A-T-CTGAA
* * * ** * * **
77534882 -GCTTCAATGTACTCCACTA-TAACCACAGGGAGGTAAAATCTGCC
1 ATCTTCAATCTACTCCACTACT--GCTTAGGGAGATAAGATCTGAA
* *
77534926 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAA
* ** *
77534970 ATCTTCAATCTATTCCACTGTTGCCTAGGGA-AGT-AGAATTACTG--
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGA-TAAG-A-T-CTGAA
* * * ** * * **
77535014 -GCTTCAATGTACTCCACTA-TAACCACAGGGAGGTAAAATCTGCC
1 ATCTTCAATCTACTCCACTACT--GCTTAGGGAGATAAGATCTGAA
* * * *
77535058 ATCTTCGATTTGCTCCACTACTGCTTAGGGAGATAATATCTGAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAA
* *
77535102 ATCTTCGATCTATTCCACT
1 ATCTTCAATCTACTCCACT
77535121 GTTGCCAGGG
Statistics
Matches: 294, Mismatches: 83, Indels: 76
0.65 0.18 0.17
Matches are distributed among these distances:
42 10 0.03
43 59 0.20
44 164 0.56
45 52 0.18
46 9 0.03
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (44 bp):
ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAA
Found at i:77534796 original size:132 final size:131
Alignment explanation
Indices: 77534599--77535207 Score: 1040
Period size: 132 Copynumber: 4.6 Consensus size: 131
77534589 ACTGCAACTT
* * * *
77534599 CAGGGAAGTAGAATTATTGGCTTCAATCTACTCCACTATAACCACAGGGAGGTAAAATTCACCAT
1 CAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCAT
*
77534664 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTATTG
66 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTG
77534729 TC
131 -C
* *
77534731 CAGGGAAGTAGAATTA-TGGGCTTCAATGTGCTCCACTATAACCATAGGGAGGTAAAATCCGCCA
1 CAGGGAAGTAGAATTACT-GGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCA
77534795 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTT
65 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTT
77534860 GAC
130 G-C
*
77534863 CAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCTGCCAT
1 CAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCAT
77534928 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTG
66 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTG
77534993 C
131 C
*
77534994 CTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCTGCCA
1 C-AGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCA
* * *
77535059 TCTTCGATTTGCTCCACTACTGCTTAGGGAGATAATATCTGAAATCTTCGATCTATTCCACTGTT
65 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTT
77535124 GC
130 GC
* *
77535126 CAGGGAAGTAGAATTACTGGCTTCAATGTACTTCACTATAACCACAGGGAGGTAAAATTCGCCAT
1 CAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCAT
*
77535191 CTTCGATTTGCTCCACT
66 CTTCGATCTGCTCCACT
77535208 GTCAATGCAA
Statistics
Matches: 458, Mismatches: 16, Indels: 7
0.95 0.03 0.01
Matches are distributed among these distances:
131 81 0.18
132 376 0.82
133 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (131 bp):
CAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCAT
CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTG
C
Found at i:77540662 original size:97 final size:97
Alignment explanation
Indices: 77540517--77540706 Score: 380
Period size: 97 Copynumber: 2.0 Consensus size: 97
77540507 GTACAATAAA
77540517 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGAACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGAACAATT
77540582 CCTTTAAAATCCCAAACTCGAAATTTTTTTTT
66 CCTTTAAAATCCCAAACTCGAAATTTTTTTTT
77540614 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGAACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGAACAATT
77540679 CCTTTAAAATCCCAAACTCGAAATTTTT
66 CCTTTAAAATCCCAAACTCGAAATTTTT
77540707 CTGAGTTTTT
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
97 93 1.00
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.29
Consensus pattern (97 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGAACAATT
CCTTTAAAATCCCAAACTCGAAATTTTTTTTT
Found at i:77540913 original size:9 final size:9
Alignment explanation
Indices: 77540899--77540923 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
77540889 TGCAAATGCT
77540899 ATAATAACA
1 ATAATAACA
77540908 ATAATAACA
1 ATAATAACA
77540917 ATAATAA
1 ATAATAA
77540924 ATACATCATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (9 bp):
ATAATAACA
Found at i:77543494 original size:14 final size:14
Alignment explanation
Indices: 77543477--77543506 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
77543467 GTATAAATTT
77543477 AAGCTTGAAAATAA
1 AAGCTTGAAAATAA
77543491 AAGCTTGAAAATAA
1 AAGCTTGAAAATAA
77543505 AA
1 AA
77543507 AGATGAGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.60, C:0.07, G:0.13, T:0.20
Consensus pattern (14 bp):
AAGCTTGAAAATAA
Found at i:77549180 original size:12 final size:12
Alignment explanation
Indices: 77549165--77549198 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
77549155 GCCGTGTAAC
77549165 AGGCCGTGTGCG
1 AGGCCGTGTGCG
77549177 AGGCCGTGTGCG
1 AGGCCGTGTGCG
*
77549189 AGGTCGTGTG
1 AGGCCGTGTG
77549199 TGACACACGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.09, C:0.21, G:0.50, T:0.21
Consensus pattern (12 bp):
AGGCCGTGTGCG
Found at i:77551047 original size:17 final size:17
Alignment explanation
Indices: 77551025--77551057 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
77551015 GCATATATTA
77551025 TTTTATCTTTATATATC
1 TTTTATCTTTATATATC
77551042 TTTTATCTTTATATAT
1 TTTTATCTTTATATAT
77551058 GTATATATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTTATCTTTATATATC
Found at i:77551086 original size:18 final size:20
Alignment explanation
Indices: 77551044--77551087 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 20
77551034 TATATATCTT
77551044 TTATCTTTATATATGTATATA
1 TTAT-TTTATATATGTATATA
77551065 TTATTTTA-ATATGTAT-TA
1 TTATTTTATATATGTATATA
77551083 TTATT
1 TTATT
77551088 CTAAAATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 7 0.30
19 8 0.35
20 4 0.17
21 4 0.17
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (20 bp):
TTATTTTATATATGTATATA
Found at i:77554026 original size:28 final size:26
Alignment explanation
Indices: 77553994--77554057 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 26
77553984 TGGTACAGTG
*
77553994 AAAAAAAATAA-AAAAACATAAAAACAT
1 AAAAAAAA-AACAAAAAAATAAAAA-AT
*
77554021 AAAAAAAAAACAAAAAAATGAAAAAT
1 AAAAAAAAAACAAAAAAATAAAAAAT
77554047 AAAAAACAAAA
1 AAAAAA-AAAA
77554058 ACCTCTACCG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 10 0.30
27 23 0.70
ACGTcount: A:0.84, C:0.06, G:0.02, T:0.08
Consensus pattern (26 bp):
AAAAAAAAAACAAAAAAATAAAAAAT
Found at i:77554029 original size:21 final size:21
Alignment explanation
Indices: 77554003--77554058 Score: 71
Period size: 21 Copynumber: 2.6 Consensus size: 21
77553993 GAAAAAAAAT
77554003 AAAAAAACATAAAAACAT-AAA
1 AAAAAAACA-AAAAACATGAAA
77554024 AAAAAAACAAAAAA-ATGAAAA
1 AAAAAAACAAAAAACATG-AAA
77554045 ATAAAAAACAAAAA
1 A-AAAAAACAAAAA
77554059 CCTCTACCGA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.06
20 5 0.16
21 13 0.41
22 12 0.38
ACGTcount: A:0.84, C:0.07, G:0.02, T:0.07
Consensus pattern (21 bp):
AAAAAAACAAAAAACATGAAA
Found at i:77554035 original size:18 final size:18
Alignment explanation
Indices: 77553994--77554058 Score: 60
Period size: 18 Copynumber: 3.4 Consensus size: 18
77553984 TGGTACAGTG
77553994 AAAAAAAATAAAAAAACA
1 AAAAAAAATAAAAAAACA
* * *
77554012 TAAAAACATAAAAAAAAA
1 AAAAAAAATAAAAAAACA
77554030 ACAAAAAAATGAAAAATAA-A
1 A-AAAAAAAT-AAAAA-AACA
77554050 AAACAAAAA
1 AAA-AAAAA
77554059 CCTCTACCGA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
18 15 0.39
19 9 0.24
20 12 0.32
21 2 0.05
ACGTcount: A:0.85, C:0.06, G:0.02, T:0.08
Consensus pattern (18 bp):
AAAAAAAATAAAAAAACA
Found at i:77554513 original size:17 final size:17
Alignment explanation
Indices: 77554491--77554533 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
77554481 CTTCACTTGA
*
77554491 AAAAAAGAAACGAAAAG
1 AAAAAAGAAAAGAAAAG
77554508 AAAAAAGAAAAGAAAAG
1 AAAAAAGAAAAGAAAAG
77554525 AAAAGAAGA
1 AAAA-AAGA
77554534 GCGAAAAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 20 0.83
18 4 0.17
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (17 bp):
AAAAAAGAAAAGAAAAG
Found at i:77554547 original size:5 final size:5
Alignment explanation
Indices: 77554493--77554531 Score: 51
Period size: 5 Copynumber: 7.4 Consensus size: 5
77554483 TCACTTGAAA
*
77554493 AAAAG AAACG AAAAG AAAAAAG AAAAG AAAAG AAAAG AA
1 AAAAG AAAAG AAAAG --AAAAG AAAAG AAAAG AAAAG AA
77554532 GAGCGAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
5 25 0.83
7 5 0.17
ACGTcount: A:0.79, C:0.03, G:0.18, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:77555973 original size:107 final size:106
Alignment explanation
Indices: 77555790--77556003 Score: 304
Period size: 107 Copynumber: 2.0 Consensus size: 106
77555780 CCACAACCCA
* * *
77555790 TACTTTGAAACTTTAAGAGGGTATTTGGCTATTTGGCTAAACGAGAAATCGAAACCCAGCACATT
1 TACTTTGAAACTTTAAAAGGATATTTGGCTATTTGGCTAAACGAGAAATCAAAACCCAGCACATT
* *
77555855 AGGGCATGTTTTCTCGAATTTTCAAACGCAAAATATTGCCT
66 AGGGCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCT
* * * *
77555896 TACTTTGAAATTTTAAAAGGATATTTGTCTATTTCG-TCGAACGAAGAAATCAAAACCCAGCACA
1 TACTTTGAAACTTTAAAAGGATATTTGGCTATTTGGCT-AAACG-AGAAATCAAAACCCAGCACA
* *
77555960 TTAGGGCACGTTTTCTTGAATTTCCAAATGCAAAATATTGCCT
64 TTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCT
77556003 T
1 T
77556004 TATTATTTTT
Statistics
Matches: 95, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
105 1 0.01
106 35 0.37
107 59 0.62
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (106 bp):
TACTTTGAAACTTTAAAAGGATATTTGGCTATTTGGCTAAACGAGAAATCAAAACCCAGCACATT
AGGGCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCT
Found at i:77556590 original size:13 final size:13
Alignment explanation
Indices: 77556572--77556597 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
77556562 GTAAATAAAT
77556572 TATAAAATATATA
1 TATAAAATATATA
77556585 TATAAAATATATA
1 TATAAAATATATA
77556598 AGTATGTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TATAAAATATATA
Found at i:77558712 original size:44 final size:45
Alignment explanation
Indices: 77558613--77558724 Score: 120
Period size: 44 Copynumber: 2.5 Consensus size: 45
77558603 TTAATCGGTT
* * * *
77558613 CCACTGCAACTTCAGGGAAATAAAATTTGCTATCTTTAACCTACT
1 CCACTGCAACTTCAGGGAGATAAAACTTGCTATCTTCAACCTACC
** * *
77558658 CCACTGCAACTTCAGGGAGATAGGACTTG-TATCTTCAACTTGCC
1 CCACTGCAACTTCAGGGAGATAAAACTTGCTATCTTCAACCTACC
*
77558702 CCACTACAACTTCATGGG-GATAA
1 CCACTGCAACTTCA-GGGAGATAA
77558725 GGTTTATGGC
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
44 28 0.50
45 28 0.50
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (45 bp):
CCACTGCAACTTCAGGGAGATAAAACTTGCTATCTTCAACCTACC
Found at i:77559015 original size:100 final size:100
Alignment explanation
Indices: 77558777--77560107 Score: 1646
Period size: 100 Copynumber: 13.3 Consensus size: 100
77558767 AAGATTTGAT
* * * *** * * *
77558777 GTTGTAGCTTCAATCTGTTTAATTGTAATGTCAAAGAAGTAAGATTCGCTGTTGTGGCTTCAATC
1 GTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
* * ** * **
77558842 TGCTCCACTATACCGCCAAGGAAGGTAAGATTCATC
66 TGTTCCGCTGCACCGCCAGGGAA-GTAAGATTCGCC
* *
77558878 GTTGTGGCTTTAATCTTTTTAATTGTAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
1 GTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
* * *
77558943 TATTCCGCTGTACCGCCAGGGAAGTAAGATTTGCC
66 TGTTCCGCTGCACCGCCAGGGAAGTAAGATTCGCC
* * * *
77558978 ATTGTGGCTTCAATCTTTTTAATTGCAATGTCCGGGAAGCAAGATTTGCCGTTTTAGCTTCAATC
1 GTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
* *
77559043 TGTTCCGCTGCACCGCCAGGAAAGTAAGATTCACC
66 TGTTCCGCTGCACCGCCAGGGAAGTAAGATTCGCC
* **
77559078 GTTGTGGCTTTAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCATCGTTGTAGCTTCAATC
1 GTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
* ** * *
77559143 TATTCCGCTGCATAGCCA-AGAAGGTAAGATTCACC
66 TGTTCCGCTGCACCGCCAGGGAA-GTAAGATTCGCC
* * ** *
77559178 ATTGTGGCTTCAATCTTTTTAATTACAATGTCAAGGAAGCAAGATTCACCGTTGTAGCTTCAATC
1 GTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
* * **
77559243 TGTTCCGCTGTACCGCCAGGGATGTAAGATTTACC
66 TGTTCCGCTGCACCGCCAGGGAAGTAAGATTCGCC
* * * *
77559278 GTTGTGGCTTCTATCTTTTTAATTGTAATGTCAGGGAAGCAAGATTCGCCGTTGTAGCTTAAATC
1 GTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
* *
77559343 TGTTCCACTGCACTGCCAGGGAAGTAAGATTCGCC
66 TGTTCCGCTGCACCGCCAGGGAAGTAAGATTCGCC
* * *
77559378 GTTGTGGCTTCAATATTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCATTGTAGCTTCAATC
1 GTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
* * * **
77559443 TATTCCGTTGCACCGCTA-GGAAGATAAGATTTTCC
66 TGTTCCGCTGCACCGCCAGGGAAG-TAAGATTCGCC
*
77559478 GTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTTGCCGTTGTAGCTTCAATC
1 GTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
* * *** * *
77559543 TGTTTCGCTACACCATTAGGAAAGTAAGATTAGCC
66 TGTTCCGCTGCACCGCCAGGGAAGTAAGATTCGCC
* *
77559578 GTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGAAAGCAAGATTCACCGTTGTAGCTTCAATC
1 GTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
* *
77559643 TGTTCCGCTGCACCGCCAGGAAAGTAAGATTTGCC
66 TGTTCCGCTGCACCGCCAGGGAAGTAAGATTCGCC
* * * * **
77559678 GTTATGCCTTCAATCTTTTTAATTACAATGTCGGGGAAGTAAGATTCGTTGTTGTAGCTTCAATC
1 GTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
* * * * *
77559743 TATTTCGCTGCACCGTCAGGGAGGTAAGATTCGCT
66 TGTTCCGCTGCACCGCCAGGGAAGTAAGATTCGCC
* * * * *
77559778 GTTGTGGGTTCAATCTTTTTAATTGCAATATTGGGGAAGCAAGATTCACCGTTGTAACTTCAATC
1 GTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
* * *
77559843 TGTTCCGTTGCACCGCCATGAAAGTAAGATTCGCC
66 TGTTCCGCTGCACCGCCAGGGAAGTAAGATTCGCC
* * *
77559878 GTTGTGGCTTCAATCTTTTTAATTGTAATGTCGGGGAAGCAAGATTCGCCATTGTAGCTTCAATT
1 GTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
* * * *
77559943 TGTTTCGCTGCACTGCCA-GGAAGATCAGATTTGCC
66 TGTTCCGCTGCACCGCCAGGGAAG-TAAGATTCGCC
* * *
77559978 GTTGTGGCTTCAATCTTTTTAATTGCAATGTCGTGGAAGCAAGATTCACCGTTGTAGCTTTAAT-
1 GTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
* ** *
77560042 TAGTTCCGCT-CTACCGCCAGAGAAGTAAGATTTTCT
66 T-GTTCCGCTGC-ACCGCCAGGGAAGTAAGATTCGCC
77560078 GTTGTGGCTTCAATCTTTTTAATTGCAATG
1 GTTGTGGCTTCAATCTTTTTAATTGCAATG
77560108 GCAAGGGTAT
Statistics
Matches: 1061, Mismatches: 161, Indels: 17
0.86 0.13 0.01
Matches are distributed among these distances:
99 13 0.01
100 964 0.91
101 84 0.08
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (100 bp):
GTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
TGTTCCGCTGCACCGCCAGGGAAGTAAGATTCGCC
Found at i:77560442 original size:24 final size:24
Alignment explanation
Indices: 77560386--77560444 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
77560376 TTTGATTGCC
*
77560386 CCCACTGTAATCTTCAAAGTTTAA
1 CCCACTGTAATCTTCAAAGTTAAA
* **
77560410 TCCGTTGTAATCTT-AAAGGTTAAA
1 CCCACTGTAATCTTCAAA-GTTAAA
77560434 CCCACTGTAAT
1 CCCACTGTAAT
77560445 TTTGGGACAT
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
23 3 0.11
24 24 0.89
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (24 bp):
CCCACTGTAATCTTCAAAGTTAAA
Found at i:77561378 original size:29 final size:28
Alignment explanation
Indices: 77561342--77561409 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 28
77561332 TTGGCCTCTC
*
77561342 TTTTTTTTCTTTTTCTTTTCTTTTCTTCT
1 TTTTTTTTCTTTTTC-CTTCTTTTCTTCT
*
77561371 TTCTTTTTTCTTTTTCCTTCTTTT-TCTCG
1 TT-TTTTTTCTTTTTCCTTCTTTTCT-TCT
77561400 TTTTTTTTCT
1 TTTTTTTTCT
77561410 CTTCTTTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
28 9 0.26
29 13 0.37
30 13 0.37
ACGTcount: A:0.00, C:0.19, G:0.01, T:0.79
Consensus pattern (28 bp):
TTTTTTTTCTTTTTCCTTCTTTTCTTCT
Found at i:77561391 original size:17 final size:19
Alignment explanation
Indices: 77561357--77561419 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 19
77561347 TTTCTTTTTC
*
77561357 TTTTCTTTTCTTCTTTCTT
1 TTTTCTTTTCTTCCTTCTT
77561376 TTTTC-TTT-TTCCTTCTT
1 TTTTCTTTTCTTCCTTCTT
*
77561393 TTTCTCGTTTTTTTTCTCTTCTT
1 TTT-TC--TTTTCTTC-CTTCTT
77561416 TTTT
1 TTTT
77561420 TTAACAATTT
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
17 11 0.30
18 5 0.14
19 5 0.14
21 3 0.08
22 4 0.11
23 9 0.24
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.78
Consensus pattern (19 bp):
TTTTCTTTTCTTCCTTCTT
Found at i:77561396 original size:23 final size:23
Alignment explanation
Indices: 77561345--77561418 Score: 73
Period size: 23 Copynumber: 3.2 Consensus size: 23
77561335 GCCTCTCTTT
*
77561345 TTTTTC-TTTTTCTTTTCT-TTTC
1 TTTTTCTTTTTTCTTTT-TCCTTC
77561367 TTCTTTCTTTTTTCTTTTTCCTTC
1 TT-TTTCTTTTTTCTTTTTCCTTC
**
77561391 TTTTTCTCGTTT-TTTTTCTCTTC
1 TTTTTCTTTTTTCTTTTTC-CTTC
77561414 TTTTT
1 TTTTT
77561419 TTTAACAATT
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
22 8 0.18
23 22 0.49
24 15 0.33
ACGTcount: A:0.00, C:0.20, G:0.01, T:0.78
Consensus pattern (23 bp):
TTTTTCTTTTTTCTTTTTCCTTC
Found at i:77561396 original size:30 final size:28
Alignment explanation
Indices: 77561338--77561409 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 28
77561328 CACCTTGGCC
*
77561338 TCTC-TTTTTTTTCTTTTTCTTTTCTTT
1 TCTCGTTTTTTTTCTTTTTCTTCTCTTT
*
77561365 TCTTCTTTCTTTTTTCTTTTTCCTTCT-TTT
1 TC-TCGTT-TTTTTTCTTTTT-CTTCTCTTT
77561395 TCTCGTTTTTTTTCT
1 TCTCGTTTTTTTTCT
77561410 CTTCTTTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
27 2 0.05
28 10 0.26
29 6 0.15
30 17 0.44
31 4 0.10
ACGTcount: A:0.00, C:0.21, G:0.01, T:0.78
Consensus pattern (28 bp):
TCTCGTTTTTTTTCTTTTTCTTCTCTTT
Found at i:77561397 original size:40 final size:39
Alignment explanation
Indices: 77561340--77561419 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 39
77561330 CCTTGGCCTC
* *
77561340 TCTTTTTTTTCTTTTTCT--TTTCTTTTCTTCTTTCTTTTT
1 TCTTTTTCTTCTTTTTCTCGTTTTTTTTC-TC-TTCTTTTT
77561379 TCTTTTTCCTTCTTTTTCTCGTTTTTTTTCTCTTCTTTTT
1 TCTTTTT-CTTCTTTTTCTCGTTTTTTTTCTCTTCTTTTT
77561419 T
1 T
77561420 TTAACAATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
39 7 0.19
40 19 0.53
41 2 0.06
42 8 0.22
ACGTcount: A:0.00, C:0.20, G:0.01, T:0.79
Consensus pattern (39 bp):
TCTTTTTCTTCTTTTTCTCGTTTTTTTTCTCTTCTTTTT
Found at i:77561408 original size:12 final size:12
Alignment explanation
Indices: 77561338--77561419 Score: 61
Period size: 12 Copynumber: 7.1 Consensus size: 12
77561328 CACCTTGGCC
77561338 TCTCTT-TTTTT
1 TCTCTTCTTTTT
*
77561349 TCTTTTTCTTTTCT
1 TC-TCTTCTTTT-T
*
77561363 TTTCTTCTTTCTT
1 TCTCTTCTTT-TT
77561376 T-T-TTC-TTTT
1 TCTCTTCTTTTT
77561385 TC-CTTC-TTTT
1 TCTCTTCTTTTT
77561395 TCTCGTT-TTTTT
1 TCTC-TTCTTTTT
77561407 TCTCTTCTTTTT
1 TCTCTTCTTTTT
77561419 T
1 T
77561420 TTAACAATTT
Statistics
Matches: 58, Mismatches: 3, Indels: 19
0.73 0.04 0.24
Matches are distributed among these distances:
9 3 0.05
10 11 0.19
11 8 0.14
12 20 0.34
13 13 0.22
14 3 0.05
ACGTcount: A:0.00, C:0.21, G:0.01, T:0.78
Consensus pattern (12 bp):
TCTCTTCTTTTT
Found at i:77561420 original size:17 final size:18
Alignment explanation
Indices: 77561342--77561421 Score: 58
Period size: 20 Copynumber: 4.3 Consensus size: 18
77561332 TTGGCCTCTC
*
77561342 TTTTTTTTCTT-TT-TCT
1 TTTTTTTTCTTCTTCTTT
*
77561358 TTTCTTTTCTTCTTTCTTT
1 TTTTTTTTCTTC-TTCTTT
*
77561377 TTTCTTTTTCCTTCTTTTTCT
1 TTT-TTTTT-CTTCTTCTT-T
77561398 CGTTTTTTTTC-TCTTCTTT
1 --TTTTTTTTCTTCTTCTTT
77561417 TTTTT
1 TTTTT
77561422 AACAATTTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 15
0.72 0.07 0.21
Matches are distributed among these distances:
16 10 0.20
17 5 0.10
18 2 0.04
19 6 0.12
20 14 0.27
21 6 0.12
22 5 0.10
23 3 0.06
ACGTcount: A:0.00, C:0.19, G:0.01, T:0.80
Consensus pattern (18 bp):
TTTTTTTTCTTCTTCTTT
Found at i:77565313 original size:107 final size:106
Alignment explanation
Indices: 77565122--77565335 Score: 322
Period size: 107 Copynumber: 2.0 Consensus size: 106
77565112 CCAAAACCCA
* * *
77565122 TACTTTGAAAGTTTAAGAGGGTATTTGGCTATTTGGCTAAACGAGAAATCGAAACCCAACATATT
1 TACTTTGAAAGTTTAAAAGGATATTTGGCTATTTGGCTAAACGAGAAATCGAAACCCAACACATT
*
77565187 GGGGCACGCTTTCTCGAATTTCCAAACGCAAAATATTGCCT
66 AGGGCACGCTTTCTCGAATTTCCAAACGCAAAATATTGCCT
* * *
77565228 TACTTTGAAATTTTAAAAGGATATTTGGCTATTTGG-TCGAACGAAGAAATTGAAACCCAACACA
1 TACTTTGAAAGTTTAAAAGGATATTTGGCTATTTGGCT-AAACG-AGAAATCGAAACCCAACACA
* *
77565292 TTAGGGCACGTTTTCTCGAATTTCCAAACGTAAAATATTGCCT
64 TTAGGGCACGCTTTCTCGAATTTCCAAACGCAAAATATTGCCT
77565335 T
1 T
77565336 TATTATTTTT
Statistics
Matches: 97, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
105 1 0.01
106 37 0.38
107 59 0.61
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (106 bp):
TACTTTGAAAGTTTAAAAGGATATTTGGCTATTTGGCTAAACGAGAAATCGAAACCCAACACATT
AGGGCACGCTTTCTCGAATTTCCAAACGCAAAATATTGCCT
Found at i:77568196 original size:87 final size:87
Alignment explanation
Indices: 77567966--77568212 Score: 253
Period size: 89 Copynumber: 2.8 Consensus size: 87
77567956 ATCGAAAACA
* * *
77567966 AATCTTGTTTCTCTGGCATTGCAGC-AGGGTAGATTAAAGCTGAAGGCAGTGAATCTTATCTCCC
1 AATCTTGTTTCCCTGGCATTGCAGCGA-AGTAGATTAAAGCTGAAGGTAGTGAATCTTATCTCCC
*
77568030 TAGCGTTAAAACTGAAGACAGCG
65 TAGCGTTAAAACTAAAGACAGCG
* * * * * * * **
77568053 AGTCTTCTTTTTTCCTAGCATTGTAGCGGAGCAGATTAAAGCTGAAGGTAGTGAATCTTATCTTT
1 AATC-T-TGTTTCCCTGGCATTGCAGCGAAGTAGATTAAAGCTGAAGGTAGTGAATCTTATCTCC
* * *
77568118 CTAGTGTTAAGACTAAAGACAGTG
64 CTAGCGTTAAAACTAAAGACAGCG
* * * * * *
77568142 AATCTTGTTTCCCTGGCATTGCAACGAAATAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCT
1 AATCTTGTTTCCCTGGCATTGCAGCGAAGTAGATTAAAGCTGAAGGTAGTGAATCTTATCTCCCT
*
77568207 GGCGTT
66 AGCGTT
77568213 GCAGTGGGAT
Statistics
Matches: 124, Mismatches: 33, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
87 53 0.43
88 2 0.02
89 69 0.56
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.32
Consensus pattern (87 bp):
AATCTTGTTTCCCTGGCATTGCAGCGAAGTAGATTAAAGCTGAAGGTAGTGAATCTTATCTCCCT
AGCGTTAAAACTAAAGACAGCG
Found at i:77568754 original size:220 final size:220
Alignment explanation
Indices: 77568356--77568866 Score: 693
Period size: 220 Copynumber: 2.3 Consensus size: 220
77568346 AGATTAAAGC
** * * *
77568356 TGAAGACGGCGAATCTTATCTTCAAAAGGTAGTAAGGAAGCAGACTTAAGCCACCAGTCCTATCT
1 TGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAAATTTAAGCCACCAGTCCTATCT
* * * *
77568421 CCCTGAGCAGCAGTGGAGTAGGTCGAAGATTGTAGATCTCGTCTTCCTGTACTAGCAGTGAAGCA
66 CCCTGAACAGCAGTAGAGTAAGTCGAAGATTGTAGATCTCGTCTTCCTGTACCAGCAGTGAAGCA
** * * *** *
77568486 GATTGAAAGCACTATCCTTATCTTCCTGGGTAGCAGTGGAGAAGGTTGAAGATTGCAGATCATGT
131 GATAAAAAGCACCAGCCTTATCTTCCTAAATAGCAGTAGAGAAGGTTGAAGATTGCAGATCATGT
* * *
77568551 GTCCTTAAGCAGTAGTGGAGCAGAT
196 CTCCCTAAGCACTAGTGGAGCAGAT
* *
77568576 TGAAGAGGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAAATTTAAGCCACCAGTGCTATCT
1 TGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAAATTTAAGCCACCAGTCCTATCT
* * * *
77568641 CCCTGAATAGCAGTAGAGTAAGTTGAAGATTGTAGATTTTGTCTTCCTGTACCAGCAGTGAAGCA
66 CCCTGAACAGCAGTAGAGTAAGTCGAAGATTGTAGATCTCGTCTTCCTGTACCAGCAGTGAAGCA
* * * *
77568706 GATAAAAAGCACCAGCCTTATC-TCTTTAAATAGCAGTAGAGTAGGTTGAAGATTGTAGATCCTG
131 GATAAAAAGCACCAGCCTTATCTTC-CTAAATAGCAGTAGAGAAGGTTGAAGATTGCAGATCATG
77568770 TCTCCCTAAGCACTAGTGGAGCAGAT
195 TCTCCCTAAGCACTAGTGGAGCAGAT
* * *
77568796 TAAAGATGGCGAATCTTATCTTCCCAATGTAGTAGGGAAG-AAGATTTAAGCCACCAGTCCTATC
1 TGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAA-ATTTAAGCCACCAGTCCTATC
77568860 TCCCTGA
65 TCCCTGA
77568867 GTTGCAGCAG
Statistics
Matches: 255, Mismatches: 34, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
219 4 0.02
220 251 0.98
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.26
Consensus pattern (220 bp):
TGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAAATTTAAGCCACCAGTCCTATCT
CCCTGAACAGCAGTAGAGTAAGTCGAAGATTGTAGATCTCGTCTTCCTGTACCAGCAGTGAAGCA
GATAAAAAGCACCAGCCTTATCTTCCTAAATAGCAGTAGAGAAGGTTGAAGATTGCAGATCATGT
CTCCCTAAGCACTAGTGGAGCAGAT
Found at i:77569109 original size:44 final size:44
Alignment explanation
Indices: 77568993--77569150 Score: 128
Period size: 44 Copynumber: 3.7 Consensus size: 44
77568983 AATTGCAGAT
* * * * *
77568993 CTTATCTCTCTGAAGTTGCAGTAGAGCA-GAT-CATAT-CAAAC
1 CTTATCCCCCTGAAGTTGCAGTAGAGCAGGTTAAAGATACAAAC
* * *
77569034 CTTATCTCTCTGAAGTTGCAGTAGAGTAGGTTAAAG-TAACAAAC
1 CTTATCCCCCTGAAGTTGCAGTAGAGCAGGTTAAAGAT-ACAAAC
* *
77569078 CTTATCCCCCTGAAGTTGCAGT-GTGGCAGGTTGAAGATACAAAC
1 CTTATCCCCCTGAAGTTGCAGTAG-AGCAGGTTAAAGATACAAAC
* * * * *
77569122 CTTATCTCTCTTAGGTCGCAGTAGAGCAG
1 CTTATCCCCCTGAAGTTGCAGTAGAGCAG
77569151 ACTGAAGCTA
Statistics
Matches: 95, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
41 27 0.28
42 3 0.03
43 2 0.02
44 61 0.64
45 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (44 bp):
CTTATCCCCCTGAAGTTGCAGTAGAGCAGGTTAAAGATACAAAC
Found at i:77570734 original size:17 final size:17
Alignment explanation
Indices: 77570712--77570744 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
77570702 GTATATATTA
77570712 TTTTATCTTTATATATC
1 TTTTATCTTTATATATC
77570729 TTTTATCTTTATATAT
1 TTTTATCTTTATATAT
77570745 GTATATATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTTATCTTTATATATC
Done.