Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 24 of 235
Found at i:7436229 original size:24 final size:24
Alignment explanation
Indices: 7436146--7436241 Score: 95
Period size: 25 Copynumber: 3.9 Consensus size: 24
7436136 AATGAAGTGC
*
7436146 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTATGCCCCAGTTTA-T
* *
7436171 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
7436195 CAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTATGCCCCAGTTTAT
*
7436219 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
7436242 ATATGATAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
23 4 0.07
24 13 0.22
25 42 0.70
26 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Found at i:7442918 original size:6 final size:6
Alignment explanation
Indices: 7442907--7442931 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7442897 ATTCGGCATT
7442907 TGTATA TGTATA TGTATA TGTATA T
1 TGTATA TGTATA TGTATA TGTATA T
7442932 TAATTCATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (6 bp):
TGTATA
Found at i:7451491 original size:27 final size:27
Alignment explanation
Indices: 7451461--7451638 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
7451451 ATATTGAGTC
* * * *
7451461 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
7451488 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7451515 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
7451543 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
7451570 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
7451597 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7451624 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
7451639 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:7451600 original size:82 final size:81
Alignment explanation
Indices: 7451482--7451637 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
7451472 TGCTATATAA
* *
7451482 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
7451547 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
7451564 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
7451628 CACTTAGTGC
65 CACTTAGTGC
7451638 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:7458173 original size:27 final size:27
Alignment explanation
Indices: 7458143--7458320 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
7458133 ATATTGAGTC
* * * *
7458143 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
7458170 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7458197 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
7458225 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
7458252 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
7458279 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7458306 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
7458321 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:7458282 original size:82 final size:81
Alignment explanation
Indices: 7458164--7458319 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
7458154 TGCTATATAA
* *
7458164 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
7458229 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
7458246 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
7458310 CACTTAGTGC
65 CACTTAGTGC
7458320 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:7462221 original size:10 final size:10
Alignment explanation
Indices: 7462208--7462246 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
7462198 ATATGTGAAT
7462208 ATATCATGGC
1 ATATCATGGC
7462218 ATATCATGTGC
1 ATATCATG-GC
7462229 ATATCATGGC
1 ATATCATGGC
7462239 ATATCATG
1 ATATCATG
7462247 TAGAAAAGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:7462234 original size:21 final size:21
Alignment explanation
Indices: 7462208--7462247 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
7462198 ATATGTGAAT
7462208 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
7462229 ATATCATGGCATATCATGT
1 ATATCATGGCATATCATGT
7462248 AGAAAAGCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:7464052 original size:22 final size:22
Alignment explanation
Indices: 7464024--7464066 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
7464014 TGAAAAACCC
*
7464024 GAAAATCAGGATGTTGCAACTT
1 GAAAATCAGGATGTTACAACTT
7464046 GAAAATCAGGATGTTACAACT
1 GAAAATCAGGATGTTACAACT
7464067 CTACCCTCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.14, G:0.21, T:0.26
Consensus pattern (22 bp):
GAAAATCAGGATGTTACAACTT
Found at i:7470107 original size:10 final size:10
Alignment explanation
Indices: 7470078--7470111 Score: 59
Period size: 10 Copynumber: 3.3 Consensus size: 10
7470068 TGAATATGTT
7470078 ATGGCATATC
1 ATGGCATATC
7470088 ATGTGCATATC
1 ATG-GCATATC
7470099 ATGGCATATC
1 ATGGCATATC
7470109 ATG
1 ATG
7470112 TAGAAAAGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 13 0.57
11 10 0.43
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (10 bp):
ATGGCATATC
Found at i:7487743 original size:27 final size:27
Alignment explanation
Indices: 7487713--7487890 Score: 151
Period size: 27 Copynumber: 6.6 Consensus size: 27
7487703 ATATTGAGCC
* *
7487713 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
7487740 CGCACGCTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
7487767 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
7487795 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
7487822 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
7487849 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
7487876 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
7487891 GTACAATTTA
Statistics
Matches: 122, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
27 98 0.80
28 24 0.20
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:7487873 original size:54 final size:55
Alignment explanation
Indices: 7487713--7487890 Score: 173
Period size: 54 Copynumber: 3.3 Consensus size: 55
7487703 ATATTGAGCC
* * * * * * * *
7487713 CGCACACTCAGTGCTATATAATCA-ACTCGCACGCTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAGACTCGCACACTGAGTGCAACATAGTCAAAT
* ** * *
7487767 CGCACACTTAGTGCTACATAGTCAGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAGACTCGCACACTGAGTGCAACATAGTCAAAT
* **
7487822 CGCACACTTAGTGC-ATCATATTCA-TTTCGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAGACTCGCACACTGAGTGCAACATAGTCAAAT
*
7487876 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
7487891 GTACAATTTA
Statistics
Matches: 103, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
54 58 0.56
55 45 0.44
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAGACTCGCACACTGAGTGCAACATAGTCAAAT
Found at i:7498928 original size:44 final size:42
Alignment explanation
Indices: 7498865--7498972 Score: 110
Period size: 44 Copynumber: 2.5 Consensus size: 42
7498855 ATGTGTTCTT
** * * *
7498865 GTGTAAGACCACATCTGGGACGTCGGCATTG-ACTTATGATTTAC
1 GTGTAAGACCATGTCTGGGACATAGGCATCGTA-TT-TGATTT-C
*
7498909 GTGTAAGACCATGTCTGGGACATAGGCATCGTATTTGATTTT
1 GTGTAAGACCATGTCTGGGACATAGGCATCGTATTTGATTTC
* *
7498951 GTGGAAGACCCTGTCTGGGACA
1 GTGTAAGACCATGTCTGGGACA
7498973 GTAGCTTCGA
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 20 0.36
43 6 0.11
44 28 0.51
45 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACATAGGCATCGTATTTGATTTC
Found at i:7503174 original size:43 final size:44
Alignment explanation
Indices: 7503062--7503185 Score: 162
Period size: 45 Copynumber: 2.8 Consensus size: 44
7503052 ATCATATATC
* * *
7503062 GATGCCACTGTACCAGACATGATCTTACACGTAATCTCAATTAA
1 GATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAATTAA
* *
7503106 TGATGCTAATGTCCTAGACATGGTCTTACACGTAATCTCAA-T-A
1 -GATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAATTAA
*
7503149 GAATGCCAATGTCCCAGACATGGTCTTACATGTAATC
1 G-ATGCCAATGTCCCAGACATGGTCTTACACGTAATC
7503186 ACATCTCGAT
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
42 1 0.01
43 33 0.47
44 1 0.01
45 35 0.50
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.29
Consensus pattern (44 bp):
GATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAATTAA
Found at i:7503722 original size:29 final size:29
Alignment explanation
Indices: 7503656--7503724 Score: 70
Period size: 29 Copynumber: 2.3 Consensus size: 29
7503646 CCAAACCTTT
7503656 CATTTATTTCACAATTTAACCCCTCAATTTA
1 CATTT-TTTCACAATTTAACCCCT-AATTTA
* * *
7503687 CA-CTTTTCTCAATTTAATCCCT-ATTTGA
1 CATTTTTTCACAATTTAACCCCTAATTT-A
7503715 CATTTTTTCA
1 CATTTTTTCA
7503725 AAAAATCACT
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
27 4 0.13
28 3 0.10
29 21 0.68
30 1 0.03
31 2 0.06
ACGTcount: A:0.28, C:0.25, G:0.01, T:0.46
Consensus pattern (29 bp):
CATTTTTTCACAATTTAACCCCTAATTTA
Found at i:7506228 original size:42 final size:42
Alignment explanation
Indices: 7506109--7506230 Score: 127
Period size: 43 Copynumber: 2.9 Consensus size: 42
7506099 TACCATACCA
* * **
7506109 ATGCAATATCCCAGAGATGGTCTTACATGGGATCTCAGATCG
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCAGATCG
* * * ** *
7506151 ATGCCAATAGCCTAGCTATGGTCTTACACAAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGAAATCTCAGATCG
* *
7506194 ATGCCATATCCCAGATATGGTTTTACATGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCA
7506231 ACCAACCATA
Statistics
Matches: 62, Mismatches: 17, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
42 29 0.47
43 33 0.53
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAATCTCAGATCG
Found at i:7515892 original size:40 final size:40
Alignment explanation
Indices: 7515844--7516039 Score: 297
Period size: 40 Copynumber: 4.9 Consensus size: 40
7515834 GGACTAAGAT
* *
7515844 CCGAAGGCATTTGTGCTAGTGATTACATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
7515884 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
7515924 CCGAAGGCATTTGTGCTAGTGACTATATCCAGGTTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
7515964 CCGAAGGCATTTGTGCTAGTGACTATGTCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
7516004 CCGAAGGCATTCGTGCGAGTTG-CTATATCC-GGCTAA
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAA
7516040 ATTCCAAAGG
Statistics
Matches: 144, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 6 0.04
40 136 0.94
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:7522274 original size:25 final size:25
Alignment explanation
Indices: 7522214--7522297 Score: 118
Period size: 26 Copynumber: 3.4 Consensus size: 25
7522204 AGGAAGTGCA
*
7522214 AAAAGGGCTTTTGCCCCAGTTTACC
1 AAAAGGGCTTTTGCCCCAGTTTATC
7522239 GAAAAGGGCTTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTTGCCCCAGTTTATC
*
7522265 AAAAGGGC-TTTGCCCCAG-TTATT
1 AAAAGGGCTTTTGCCCCAGTTTATC
7522288 AAAAGAGGCT
1 AAAAG-GGCT
7522298 AGGCCTCCAG
Statistics
Matches: 54, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
23 9 0.17
24 13 0.24
25 8 0.15
26 24 0.44
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTTATC
Found at i:7529887 original size:25 final size:25
Alignment explanation
Indices: 7529833--7529916 Score: 100
Period size: 26 Copynumber: 3.4 Consensus size: 25
7529823 AGGAAGTGCA
* *
7529833 AAAAGGGCCTTTGCCCTAGTTTACC
1 AAAAGGGCTTTTGCCCTAGTTTATC
7529858 GAAAAGGGCTTTTGCCCTAGTTTATC
1 -AAAAGGGCTTTTGCCCTAGTTTATC
* *
7529884 AAAAGGGC-TTTGCCCCAG-TTATT
1 AAAAGGGCTTTTGCCCTAGTTTATC
7529907 AAAAGAGGCT
1 AAAAG-GGCT
7529917 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
23 9 0.17
24 12 0.23
25 8 0.15
26 23 0.44
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCTAGTTTATC
Found at i:7530160 original size:31 final size:31
Alignment explanation
Indices: 7530125--7530187 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
7530115 GTTTACAGTG
* *
7530125 AAGGCTTCGGCCCAGTAATATGGAATATGAA
1 AAGGCTTCGGCCCAATAATATGAAATATGAA
**
7530156 AAGGCTTCGGCCCAATGTTATGAAATATGAA
1 AAGGCTTCGGCCCAATAATATGAAATATGAA
7530187 A
1 A
7530188 TATGAAAAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAGGCTTCGGCCCAATAATATGAAATATGAA
Found at i:7533174 original size:12 final size:12
Alignment explanation
Indices: 7533157--7533181 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7533147 AAATTAAAAT
7533157 TATTCAATCAAA
1 TATTCAATCAAA
7533169 TATTCAATCAAA
1 TATTCAATCAAA
7533181 T
1 T
7533182 TCATCCAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (12 bp):
TATTCAATCAAA
Found at i:7535292 original size:22 final size:23
Alignment explanation
Indices: 7535264--7535306 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
7535254 ATGCCATATC
*
7535264 ATAACCA-ACCAAATTCATGCTT
1 ATAACCATACCAAAATCATGCTT
*
7535286 ATAACCATATCAAAATCATGC
1 ATAACCATACCAAAATCATGC
7535307 CAAATCATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.44, C:0.26, G:0.05, T:0.26
Consensus pattern (23 bp):
ATAACCATACCAAAATCATGCTT
Found at i:7536191 original size:43 final size:43
Alignment explanation
Indices: 7536090--7536172 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
7536080 CCCAGTCGTA
* *
7536090 GTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAACAGT
1 GTCTTACAAGAAATCAAATATCGATGCCACTGTCCCAAACAGT
7536133 GTCTTACAAGAAATCAAATA-CGATGCCGA-TGTCCCAAACA
1 GTCTTACAAGAAATCAAATATCGATGCC-ACTGTCCCAAACA
7536173 TGGTTGTACA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
42 18 0.49
43 19 0.51
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.24
Consensus pattern (43 bp):
GTCTTACAAGAAATCAAATATCGATGCCACTGTCCCAAACAGT
Found at i:7538604 original size:19 final size:19
Alignment explanation
Indices: 7538568--7538606 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
7538558 TTTTTATCAT
* *
7538568 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
7538587 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
7538606 A
1 A
7538607 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:7539127 original size:27 final size:27
Alignment explanation
Indices: 7539070--7539149 Score: 106
Period size: 27 Copynumber: 2.9 Consensus size: 27
7539060 GTGACAGAGT
* *
7539070 CACCAGATACAGATATTTTGTGGCTGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGGGC
*
7539099 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGGGC
7539126 CACCAGAACAGATAATTTGTGGCA
1 CACCAGAACAGAT-ATTTGTGGCA
7539150 TAGCCACTAG
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
27 23 0.50
28 16 0.35
29 7 0.15
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGGGC
Found at i:7539558 original size:16 final size:15
Alignment explanation
Indices: 7539537--7539568 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
7539527 CCAAAATACC
7539537 GACTTTTCGGCATTTT
1 GACTTTTCGGC-TTTT
7539553 GACTTTTCGGCTTTT
1 GACTTTTCGGCTTTT
7539568 G
1 G
7539569 CCGATCTAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.09, C:0.19, G:0.22, T:0.50
Consensus pattern (15 bp):
GACTTTTCGGCTTTT
Found at i:7540009 original size:40 final size:40
Alignment explanation
Indices: 7539952--7540032 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
7539942 AAGTTTTGGG
7539952 GAAGACTTACCACCGATTCCTTAGTGAATGATTCCAATGA
1 GAAGACTTACCACCGATTCCTTAGTGAATGATTCCAATGA
*
7539992 GAAGACTTACCATCGATTCCTTAGTGAATGATTCCAATGA
1 GAAGACTTACCACCGATTCCTTAGTGAATGATTCCAATGA
7540032 G
1 G
7540033 TTTCCCACTC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (40 bp):
GAAGACTTACCACCGATTCCTTAGTGAATGATTCCAATGA
Found at i:7540413 original size:12 final size:13
Alignment explanation
Indices: 7540394--7540426 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
7540384 GGGTTTGACT
7540394 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
7540407 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
7540419 ATGGAGAA
1 ATGGAGAA
7540427 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:7550652 original size:40 final size:39
Alignment explanation
Indices: 7550608--7550712 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
7550598 AGTGACCATA
*
7550608 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
7550648 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
7550686 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGACTAAG-CCCGAAGGCATTTG
7550713 AACGAGTAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 32 0.55
40 24 0.41
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:7550669 original size:39 final size:40
Alignment explanation
Indices: 7550568--7550731 Score: 169
Period size: 40 Copynumber: 4.1 Consensus size: 40
7550558 TTGAATGATG
* *
7550568 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATA
*
7550608 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA
*
7550647 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
* * **
7550687 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATA-CTATA
7550727 TCCGG
1 TCCGG
7550732 TTAAATTCCG
Statistics
Matches: 106, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
39 36 0.34
40 59 0.56
41 10 0.09
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
Found at i:7550731 original size:79 final size:80
Alignment explanation
Indices: 7550568--7550718 Score: 191
Period size: 79 Copynumber: 1.9 Consensus size: 80
7550558 TTGAATGATG
*
7550568 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
7550633 GTGCGAGATACTAAT
66 GAACGAGATACTAAT
* * * * *
7550648 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
7550710 TTGAACGAG
64 TTGAACGAG
7550719 TAGCTATATC
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 42 0.69
80 18 0.30
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGATACTAAT
Found at i:7556565 original size:19 final size:19
Alignment explanation
Indices: 7556529--7556567 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
7556519 TTTTCATCAT
* *
7556529 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
7556548 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
7556567 A
1 A
7556568 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:7557071 original size:55 final size:56
Alignment explanation
Indices: 7557006--7557120 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
7556996 AGCATGGCTG
* *
7557006 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * * *
7557062 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAATAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
7557117 CCAG
1 CCAG
7557121 GATGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 28 0.55
56 22 0.43
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:7557083 original size:27 final size:27
Alignment explanation
Indices: 7557031--7557120 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
7557021 GTGACAGAGT
7557031 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
7557060 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
*
7557087 CACCAGAATAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
7557115 CACCAG
1 CACCAG
7557121 GATGCTTCCT
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 23 0.43
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:7557116 original size:28 final size:27
Alignment explanation
Indices: 7557031--7557120 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
7557021 GTGACAGAGT
*
7557031 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
* *
7557060 CACCAGAACAGAT-ATATGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
*
7557087 CACCAGAATAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
7557115 CACCAG
1 CACCAG
7557121 GATGCTTCCT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 23 0.43
28 23 0.43
29 7 0.13
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:7558335 original size:12 final size:13
Alignment explanation
Indices: 7558316--7558348 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
7558306 GGGTTTGGCT
7558316 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
7558329 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
7558341 ATGGAGAA
1 ATGGAGAA
7558349 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:7559546 original size:27 final size:27
Alignment explanation
Indices: 7559514--7559832 Score: 242
Period size: 27 Copynumber: 11.9 Consensus size: 27
7559504 AACCATATAT
* *
7559514 CACATAGGGGCAAAATAATCATTTTAC
1 CACATAAGGGCAAAACAATCATTTTAC
7559541 CACATAAGGGCAAAACAGA-CATTTTAC
1 CACATAAGGGCAAAACA-ATCATTTTAC
* * * *
7559568 CACATAAGGGCAAAATAGTTATTTTAT
1 CACATAAGGGCAAAACAATCATTTTAC
* * *
7559595 CA-ATTAGGGGCAAAATAATCATTTTAT
1 CACA-TAAGGGCAAAACAATCATTTTAC
7559622 CACATAAGGGCAAAACAGA-CATTTTAC
1 CACATAAGGGCAAAACA-ATCATTTTAC
* * * * * *
7559649 CATATAAGAGCAAAACAGTTATTATAT
1 CACATAAGGGCAAAACAATCATTTTAC
* * *
7559676 CA-ACTAGGGGCAAAACAGTCATTTGAC
1 CACA-TAAGGGCAAAACAATCATTTTAC
* * * *
7559703 CACATAATGGCAAAACAGTTATTTTAT
1 CACATAAGGGCAAAACAATCATTTTAC
* * *
7559730 CA-ACTAGGGGC--AA-AGTCATTTTTAT
1 CACA-TAAGGGCAAAACAATCA-TTTTAC
*
7559755 CA-ATTAGGGTCAAAACAATCATTTTAC
1 CACATAAGGG-CAAAACAATCATTTTAC
*
7559782 CACATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAATCATTTTAC
* * *
7559809 CACATAAGGGAAAAATAGTCATTT
1 CACATAAGGGCAAAACAATCATTT
7559833 ATTAATTTGG
Statistics
Matches: 237, Mismatches: 40, Indels: 30
0.77 0.13 0.10
Matches are distributed among these distances:
24 8 0.03
25 12 0.05
26 3 0.01
27 200 0.84
28 14 0.06
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (27 bp):
CACATAAGGGCAAAACAATCATTTTAC
Found at i:7559646 original size:81 final size:81
Alignment explanation
Indices: 7559518--7559832 Score: 404
Period size: 81 Copynumber: 3.9 Consensus size: 81
7559508 ATATATCACA
*
7559518 TAGGGGCAAAATAATCATTTTACCACATAAGGGCAAAACAGACATTTTACCACATAAGGGCAAAA
1 TAGGGGCAAAACAATCATTTTACCACATAAGGGCAAAACAGACATTTTACCACATAAGGGCAAAA
*
7559583 TAGTTATTTTATCAAT
66 TAGTCATTTTATCAAT
* * * *
7559599 TAGGGGCAAAATAATCATTTTATCACATAAGGGCAAAACAGACATTTTACCATATAAGAGCAAAA
1 TAGGGGCAAAACAATCATTTTACCACATAAGGGCAAAACAGACATTTTACCACATAAGGGCAAAA
* * * *
7559664 CAGTTATTATATCAAC
66 TAGTCATTTTATCAAT
* * * ** * *
7559680 TAGGGGCAAAACAGTCATTTGACCACATAATGGCAAAACAGTTATTTTATCA-ACTAGGGGC--A
1 TAGGGGCAAAACAATCATTTTACCACATAAGGGCAAAACAGACATTTTACCACA-TAAGGGCAAA
7559742 A-AGTCATTTTTATCAAT
65 ATAGTCA-TTTTATCAAT
* * *
7559759 TAGGGTCAAAACAATCATTTTACCACATAAGGGCAAAACAGTCATTTTACCACATAAGGGAAAAA
1 TAGGGGCAAAACAATCATTTTACCACATAAGGGCAAAACAGACATTTTACCACATAAGGGCAAAA
7559824 TAGTCATTT
66 TAGTCATTT
7559833 ATTAATTTGG
Statistics
Matches: 201, Mismatches: 27, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
78 4 0.02
79 61 0.30
80 2 0.01
81 129 0.64
82 5 0.02
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (81 bp):
TAGGGGCAAAACAATCATTTTACCACATAAGGGCAAAACAGACATTTTACCACATAAGGGCAAAA
TAGTCATTTTATCAAT
Found at i:7563384 original size:27 final size:27
Alignment explanation
Indices: 7563361--7563465 Score: 131
Period size: 27 Copynumber: 3.9 Consensus size: 27
7563351 TATCACATAG
*
7563361 GGGCAAAACAGTCATTTTACCACACAA
1 GGGCAAAACAATCATTTTACCACACAA
7563388 GGGCAAAACAATCATTTTACCACACAA
1 GGGCAAAACAATCATTTTACCACACAA
* * **
7563415 GGGCAAAATAATCATTTTATCA-ATTA
1 GGGCAAAACAATCATTTTACCACACAA
* *
7563441 GAGGCAAAATAGTCATTTTACCACA
1 G-GGCAAAACAATCATTTTACCACA
7563466 AGCCCGTGTG
Statistics
Matches: 69, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
26 3 0.04
27 65 0.94
28 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.13, T:0.24
Consensus pattern (27 bp):
GGGCAAAACAATCATTTTACCACACAA
Found at i:7571046 original size:42 final size:42
Alignment explanation
Indices: 7570964--7571095 Score: 142
Period size: 44 Copynumber: 3.0 Consensus size: 42
7570954 TCTGACATGT
* * *
7570964 AATCAAATATCGATGCCACTATCCC-GAACAGGGTCTTACACAA
1 AATCAAATA-CGATGCCAATGTCCCAG-ACATGGTCTTACACAA
* *
7571007 AATCAAATACAATGCCAATGTCCCAGACATGGTCGTACACATA
1 AATCAAATACGATGCCAATGTCCCAGACATGGTCTTACACA-A
*
7571050 AATCATAAGT-CGATGCCAACGTCCCAGACATGGTCTTACACGAA
1 AATCA-AA-TACGATGCCAATGTCCCAGACATGGTCTTACAC-AA
7571094 AA
1 AA
7571096 CACATATCGG
Statistics
Matches: 76, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
42 25 0.33
43 16 0.21
44 33 0.43
45 2 0.03
ACGTcount: A:0.38, C:0.27, G:0.15, T:0.20
Consensus pattern (42 bp):
AATCAAATACGATGCCAATGTCCCAGACATGGTCTTACACAA
Found at i:7574367 original size:27 final size:27
Alignment explanation
Indices: 7574348--7574453 Score: 113
Period size: 27 Copynumber: 3.9 Consensus size: 27
7574338 AAAATTATCG
* * *
7574348 AAATACCCTTGGTTTGTAAAAATACTA
1 AAATACCCTCGATTTGTAAAATTACTA
*
7574375 AAATACCCTCGATTTGTAAAATTACTG
1 AAATACCCTCGATTTGTAAAATTACTA
* * * *
7574402 AAACACCTTCGACTTGTAAAATTACCA
1 AAATACCCTCGATTTGTAAAATTACTA
* **
7574429 AAGTACCCTCGATTTACAAAATTAC
1 AAATACCCTCGATTTGTAAAATTAC
7574454 CATTCTACCT
Statistics
Matches: 64, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 64 1.00
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATACCCTCGATTTGTAAAATTACTA
Found at i:7574697 original size:27 final size:27
Alignment explanation
Indices: 7574432--7574696 Score: 275
Period size: 27 Copynumber: 9.8 Consensus size: 27
7574422 ATTACCAAAG
* *
7574432 TACCCTCGATTTACAAAATTACCATTC
1 TACCCTCGATTTACATAATTACCATTT
*
7574459 TA-CCTCCGATTTACATAATTACCGTTT
1 TACCCT-CGATTTACATAATTACCATTT
* **
7574486 TACCCCCGATTTACATAATTACTGTTT
1 TACCCTCGATTTACATAATTACCATTT
7574513 TACCC-CTGATTTACATAATTACCATTT
1 TACCCTC-GATTTACATAATTACCATTT
* *
7574540 TACCCCCAATTTA-ACTAATTACCATTT
1 TACCCTCGATTTACA-TAATTACCATTT
* * *
7574567 TACCGTCAATTTACAGAATTACCATTT
1 TACCCTCGATTTACATAATTACCATTT
* * **
7574594 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACATAATTACCATTT
* * *
7574621 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACATAATTACCATTT
* * **
7574648 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACATAATTACCATTT
*
7574675 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACATAATTAC
7574697 TAAGATACCC
Statistics
Matches: 210, Mismatches: 22, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
26 5 0.02
27 201 0.96
28 4 0.02
ACGTcount: A:0.30, C:0.24, G:0.06, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACATAATTACCATTT
Found at i:7574706 original size:54 final size:54
Alignment explanation
Indices: 7574594--7574723 Score: 170
Period size: 54 Copynumber: 2.4 Consensus size: 54
7574584 ATTACCATTT
* * * * ***
7574594 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAAAATTACTGTTTTACCCTCGATTTACAAAATTACTAAGA
*
7574648 TACCCTTGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACTAAGA
1 TACCCTTGATTTATAAAATTACTGTTTTACCCTCGATTTACAAAATTACTAAGA
* *
7574702 TACCCTTGGTTTGTAAAATTAC
1 TACCCTTGATTTATAAAATTAC
7574724 CAAAATACCC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.31, C:0.19, G:0.09, T:0.41
Consensus pattern (54 bp):
TACCCTTGATTTATAAAATTACTGTTTTACCCTCGATTTACAAAATTACTAAGA
Found at i:7574719 original size:27 final size:27
Alignment explanation
Indices: 7574689--7574927 Score: 203
Period size: 27 Copynumber: 8.8 Consensus size: 27
7574679 CTCGATTTAC
* *
7574689 AAAATTACTAAGATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
*
7574716 AAAATTACCAAAATACCCTTAGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
7574743 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * ***
7574770 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * **
7574797 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACCAAAATACCCTTGGTTTGT
* * *
7574824 AAAGTTA-CAGAAATACCCTTGACTTTCT
1 AAAATTACCA-AAATACCCTTG-GTTTGT
* * * **
7574852 AAAAATTA-TAGAAATACCATTAGTTTAC
1 -AAAATTACCA-AAATACCCTTGGTTTGT
**
7574880 AAAATTACTGAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * *
7574907 AGATTTACCAAAACACCCTTG
1 AAAATTACCAAAATACCCTTG
7574928 TAGGATGAAA
Statistics
Matches: 170, Mismatches: 38, Indels: 8
0.79 0.18 0.04
Matches are distributed among these distances:
26 2 0.01
27 144 0.85
28 7 0.04
29 17 0.10
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGGTTTGT
Found at i:7575049 original size:27 final size:27
Alignment explanation
Indices: 7574966--7575042 Score: 129
Period size: 27 Copynumber: 2.9 Consensus size: 27
7574956 TAGGTAAAAA
7574966 GACCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
7574993 GACCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
*
7575020 GACCGTAATA-CCCCTGTATGGTA
1 GACCGTAA-AGCCCCTGTAGGGTA
7575043 CAATGACGAA
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
27 47 0.98
28 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (27 bp):
GACCGTAAAGCCCCTGTAGGGTAAAGT
Found at i:7575949 original size:25 final size:26
Alignment explanation
Indices: 7575852--7575949 Score: 146
Period size: 26 Copynumber: 3.8 Consensus size: 26
7575842 GAGGAAGTGC
*
7575852 AAAAGGGCTTATACCCCAGTTTA-CAG
1 AAAAGGGCTTATGCCCCAGTTTATC-G
* *
7575878 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
7575904 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
7575930 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
7575950 ATTAAAGAGG
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.15
26 56 0.85
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:7576153 original size:42 final size:42
Alignment explanation
Indices: 7576094--7576185 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
7576084 TAGTCTCCCC
* ** *
7576094 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
7576136 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
7576178 AAATGGGC
1 AAATGGGC
7576186 CTATAGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:7576284 original size:31 final size:31
Alignment explanation
Indices: 7576213--7576287 Score: 105
Period size: 31 Copynumber: 2.4 Consensus size: 31
7576203 TACAGTAAAG
* * *
7576213 GCTTCAGCCAAGTGAAATGATTTATGAAAAG
1 GCTTCGGCCCAGTGAAATGATTTATGAAAAA
* *
7576244 GCTTTGGCCCAGTGATATGATTTATGAAAAA
1 GCTTCGGCCCAGTGAAATGATTTATGAAAAA
7576275 GCTTCGGCCCAGT
1 GCTTCGGCCCAGT
7576288 AACCATTAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (31 bp):
GCTTCGGCCCAGTGAAATGATTTATGAAAAA
Found at i:7588975 original size:33 final size:33
Alignment explanation
Indices: 7588933--7589080 Score: 296
Period size: 33 Copynumber: 4.5 Consensus size: 33
7588923 AAACAAGTTT
7588933 ATAATGAAGGGTTGTTTTAATTGTTAGGTTAAG
1 ATAATGAAGGGTTGTTTTAATTGTTAGGTTAAG
7588966 ATAATGAAGGGTTGTTTTAATTGTTAGGTTAAG
1 ATAATGAAGGGTTGTTTTAATTGTTAGGTTAAG
7588999 ATAATGAAGGGTTGTTTTAATTGTTAGGTTAAG
1 ATAATGAAGGGTTGTTTTAATTGTTAGGTTAAG
7589032 ATAATGAAGGGTTGTTTTAATTGTTAGGTTAAG
1 ATAATGAAGGGTTGTTTTAATTGTTAGGTTAAG
7589065 ATAATGAAGGGTTGTT
1 ATAATGAAGGGTTGTT
7589081 ACTATTATAA
Statistics
Matches: 115, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 115 1.00
ACGTcount: A:0.30, C:0.00, G:0.28, T:0.42
Consensus pattern (33 bp):
ATAATGAAGGGTTGTTTTAATTGTTAGGTTAAG
Found at i:7592635 original size:56 final size:56
Alignment explanation
Indices: 7592549--7592668 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
7592539 ACAAGGGATG
7592549 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
7592605 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
7592661 ATGGGCAA
1 ATGGGCAA
7592669 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:7593832 original size:47 final size:47
Alignment explanation
Indices: 7593779--7594189 Score: 741
Period size: 47 Copynumber: 8.7 Consensus size: 47
7593769 TTAGGATTCT
7593779 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
7593826 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
7593873 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
7593920 ATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
7593967 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
7594014 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
7594061 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
7594108 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
7594155 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
7594190 TCCCGAAGGG
Statistics
Matches: 352, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 352 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:7593926 original size:22 final size:22
Alignment explanation
Indices: 7593898--7593973 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
7593888 AAGTGTATAT
7593898 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** ***
7593920 ATGTGATGAATGTGAAAGTGTGTAT
1 ATGTGAT-AAGGCCTAA-TG-GCCG
7593945 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
7593967 ATGTGAT
1 ATGTGAT
7593974 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.29
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:7594364 original size:37 final size:37
Alignment explanation
Indices: 7594308--7594378 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
7594298 CCGAGCTCTA
* * *
7594308 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTTCGTCCGGGT
*
7594345 AAGACCCGATAACTTCGTGTGGAGATTTCGTCCG
1 AAGACCCGATAACTACGTGTGGAGATTTCGTCCG
7594379 AGCTAAAGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTTCGTCCGGGT
Found at i:7596479 original size:40 final size:40
Alignment explanation
Indices: 7596254--7596596 Score: 345
Period size: 40 Copynumber: 8.6 Consensus size: 40
7596244 TCAAATGATG
* *
7596254 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * * * *
7596294 TCCGGACTAAGAT-CCGAAG-GCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAGTGA-TATA
* * * *
7596334 TCCGGGTTAAGTCCCGAAG-GCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TATA
* * * *
7596374 ACCGAGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* * *
7596414 TCTGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* * *
7596454 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTC
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
7596494 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* ** * *
7596534 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
7596574 TCTGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
7596597 ATCATGCTGG
Statistics
Matches: 259, Mismatches: 40, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.00
40 238 0.92
41 20 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:7596813 original size:25 final size:25
Alignment explanation
Indices: 7596772--7596823 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
7596762 TGTGTAATAA
7596772 TGAATGAATAAGAGCACTATGTGTG
1 TGAATGAATAAGAGCACTATGTGTG
* *
7596797 TGAATG-ATTAGAGGCACTGTGTGTG
1 TGAATGAATAAGA-GCACTATGTGTG
7596822 TG
1 TG
7596824 CGAATTCCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.31
Consensus pattern (25 bp):
TGAATGAATAAGAGCACTATGTGTG
Found at i:7598004 original size:47 final size:47
Alignment explanation
Indices: 7597953--7599100 Score: 2041
Period size: 47 Copynumber: 24.5 Consensus size: 47
7597943 TTAGGATTCT
* * * * *
7597953 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTACATATGTGGTAAGGCCTAATGGCCG
7598000 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
7598047 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
7598094 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
7598141 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
7598188 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
7598235 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
7598282 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
* *
7598329 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
* *
7598376 ATGTGATGAATGTGAAAGTGTATATATGTGGTAAGGACTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
*
7598423 ATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
*
7598470 ATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
*
7598517 ATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
*
7598564 ATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
*
7598611 ATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
*
7598658 ATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
*
7598705 ATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
7598752 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
7598799 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
7598846 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
7598893 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
7598940 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
*
7598987 ATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
** * * * *
7599034 ATGTGATGAATGTGAAAGTGT--ATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
* *
7599079 ACGTGATGGATGTGAAAGTGTA
1 ATGTGATGAATGTGAAAGTGTA
7599101 TAAATGTGAT
Statistics
Matches: 1078, Mismatches: 21, Indels: 5
0.98 0.02 0.00
Matches are distributed among these distances:
45 38 0.04
46 1 0.00
47 1039 0.96
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTACATATGTGGTAAGGCCTAATGGCCG
Found at i:7599288 original size:37 final size:37
Alignment explanation
Indices: 7599231--7599310 Score: 115
Period size: 37 Copynumber: 2.2 Consensus size: 37
7599221 TCCGAGCTCT
* * *
7599231 AAAGACCCGATGACTACGTGTGGGGATTTTGTCCGGG
1 AAAGACCCGATAACTACGTGTGGAGATTATGTCCGGG
*
7599268 AAAGACCCGATAACTTCGTGTGGAGATTATGTCCGGG
1 AAAGACCCGATAACTACGTGTGGAGATTATGTCCGGG
*
7599305 TAAGAC
1 AAAGAC
7599311 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (37 bp):
AAAGACCCGATAACTACGTGTGGAGATTATGTCCGGG
Found at i:7600876 original size:48 final size:48
Alignment explanation
Indices: 7600776--7600905 Score: 154
Period size: 48 Copynumber: 2.7 Consensus size: 48
7600766 TAAATTGCCG
* * * * *
7600776 ATGCCATGTCCTAGACATGGTCTTACATTGGCTCACATGTCAAGGCTG
1 ATGCCATGTCCTAGACATGCTCTTACACTGGCTCACATCTCAAGACTA
* * * *
7600824 ATGCCATGTCCTAGACATGTTCTTGCACTAGCTC-CAGTCTCAATACTA
1 ATGCCATGTCCTAGACATGCTCTTACACTGGCTCACA-TCTCAAGACTA
*
7600872 ATGCCATGTCCCAGACATGCTCTTACACTGGCTC
1 ATGCCATGTCCTAGACATGCTCTTACACTGGCTC
7600906 TCATAATGTT
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
47 2 0.03
48 67 0.97
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCTAGACATGCTCTTACACTGGCTCACATCTCAAGACTA
Found at i:7602891 original size:43 final size:43
Alignment explanation
Indices: 7602844--7602961 Score: 182
Period size: 43 Copynumber: 2.7 Consensus size: 43
7602834 TAGCTAAAGT
*
7602844 TATCTGATTTCGCACACTTAGTGCCAATGTATTTAGCCGAAGC
1 TATCTGATCTCGCACACTTAGTGCCAATGTATTTAGCCGAAGC
* * *
7602887 TATCTGGTCTCGCACACTTAGTGCCAATATATTTAGCCGGAGC
1 TATCTGATCTCGCACACTTAGTGCCAATGTATTTAGCCGAAGC
*
7602930 TATCTCAGTCTCGCACACTTAGTGCCAATGTA
1 TATCTGA-TCTCGCACACTTAGTGCCAATGTA
7602962 CAATATATAT
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
43 44 0.66
44 23 0.34
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (43 bp):
TATCTGATCTCGCACACTTAGTGCCAATGTATTTAGCCGAAGC
Found at i:7605193 original size:44 final size:44
Alignment explanation
Indices: 7605030--7605195 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 44
7605020 ATATAGCTGG
* *
7605030 AGCTATCTCAAT-TACACACACTAAGTGCCAATATATGTATACAGCCGA
1 AGCTATCTCAGTCT-CACACACTTAGTGCCAATATAT-T-T--AGCCGA
* * * * *
7605078 AGTTATTTGA-TCTCGCATACTTAGTGCCAA-AGTATTTAGCCGA
1 AGCTATCTCAGTCTCACACACTTAGTGCCAATA-TATTTAGCCGA
* *
7605121 AGCTATCT-TGTCTCACACACTTAGTGCCAATATATTTAGCTGA
1 AGCTATCTCAGTCTCACACACTTAGTGCCAATATATTTAGCCGA
7605164 AGCTATCTCAGTCTCACACACTTAGTGCCAAT
1 AGCTATCTCAGTCTCACACACTTAGTGCCAAT
7605196 CTACAATATA
Statistics
Matches: 100, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
43 48 0.48
44 23 0.23
45 1 0.01
46 2 0.02
47 18 0.18
48 8 0.08
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (44 bp):
AGCTATCTCAGTCTCACACACTTAGTGCCAATATATTTAGCCGA
Found at i:7608917 original size:22 final size:22
Alignment explanation
Indices: 7608892--7608948 Score: 60
Period size: 27 Copynumber: 2.4 Consensus size: 22
7608882 TCCCATACTG
*
7608892 ATGAAATGACTGTTATACCCCT
1 ATGAAATGACTGATATACCCCT
7608914 ATGAGGTAAAATGACTGATATACCCCT
1 AT---G--AAATGACTGATATACCCCT
7608941 ATGAAATG
1 ATGAAATG
7608949 TATGACTGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 10
0.73 0.03 0.25
Matches are distributed among these distances:
22 7 0.24
24 1 0.03
25 1 0.03
27 20 0.69
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.28
Consensus pattern (22 bp):
ATGAAATGACTGATATACCCCT
Found at i:7609612 original size:17 final size:17
Alignment explanation
Indices: 7609590--7609634 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
7609580 AGAACACGAA
*
7609590 TTTTCAAAAGATAAAGG
1 TTTTCAAAACATAAAGG
*
7609607 TTTTCAAAACATAAATG
1 TTTTCAAAACATAAAGG
7609624 TTTTCAAAACA
1 TTTTCAAAACA
7609635 CCACGCTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.47, C:0.11, G:0.09, T:0.33
Consensus pattern (17 bp):
TTTTCAAAACATAAAGG
Found at i:7615508 original size:48 final size:48
Alignment explanation
Indices: 7615456--7615961 Score: 645
Period size: 48 Copynumber: 10.6 Consensus size: 48
7615446 ATGTCAGTGT
* * * * **
7615456 CGATGCCATGTCCCAGACATGGTCTTACATTAGCACACATATTAGTAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
* * * *
7615504 CGATGCCATGTCCCAAACATCGTCTTACACTGGTTCACATATCAATAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
* *
7615552 CGATGCCATGTCCCAAACATGGTCTTACACTGGTTCACATATCAACAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
* *
7615600 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCCACAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
* * * * * *
7615648 TGATGTCATATCCTAGACATGGTCTTACACTGGCTCACATATTAACGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
* *
7615696 CGATGCCATGTCCCAGGCATAGTCTTACACTGGCTCACATATCAACAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
* *
7615744 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCCACGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
* * *
7615792 CGATGCCATGTCCCAAACATGGTATTACACTGGCTCACATATCAACAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
* * * ***
7615840 CAATGCTATGTCTCAGACATGGTCTTACACTGGCTCACATATCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
* * * * * **
7615888 CGATGCCATGTCCTAGACATGTTCTTACAC-GGGTCTCATATCGATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
7615935 CGATGCCATGTCCCAGACATGGTCTTA
1 CGATGCCATGTCCCAGACATGGTCTTA
7615962 TACGGGACCT
Statistics
Matches: 402, Mismatches: 56, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
47 38 0.09
48 364 0.91
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
Found at i:7620424 original size:27 final size:26
Alignment explanation
Indices: 7620389--7620500 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
7620379 AACATGGCTG
* *
7620389 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
7620415 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
7620443 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
7620470 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
7620497 CCAG
1 CCAG
7620501 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 54 0.71
28 16 0.21
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:7620453 original size:54 final size:54
Alignment explanation
Indices: 7620389--7620500 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
7620379 AACATGGCTG
*
7620389 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAACCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAACCA
* * * *
7620443 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
7620497 CCAG
1 CCAG
7620501 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
Found at i:7622278 original size:30 final size:31
Alignment explanation
Indices: 7622244--7622340 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 31
7622234 AGCTCACTCC
*
7622244 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* * * * *
7622274 TAGCTCAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* *
7622304 CAGCTCAACTTT-AGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
7622334 TAGCTCA
1 TAGCTCA
7622341 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
30 47 0.92
31 4 0.08
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (31 bp):
TAGCTCAACTTTCAGCTCACGAGCTAAACCT
Found at i:7626979 original size:30 final size:31
Alignment explanation
Indices: 7626945--7627041 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 31
7626935 AGCTCACTCC
*
7626945 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* * * * *
7626975 TAGCTCAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* *
7627005 CAGCTCAACTTT-AGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
7627035 TAGCTCA
1 TAGCTCA
7627042 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
30 47 0.92
31 4 0.08
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (31 bp):
TAGCTCAACTTTCAGCTCACGAGCTAAACCT
Found at i:7634690 original size:27 final size:27
Alignment explanation
Indices: 7634650--7634761 Score: 122
Period size: 27 Copynumber: 4.1 Consensus size: 27
7634640 AGCATGGCTG
* * *
7634650 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAAATAATGTGGCAGAGCCA
*
7634676 CCAGATACAAATAATCGTGGCAGAACCA
1 CCAGATACAAATAAT-GTGGCAGAGCCA
*
7634704 CCAG-TACAGATATATGTGGCAGAGCCA
1 CCAGATACAAATA-ATGTGGCAGAGCCA
*
7634731 CCAGAT-CAAATAATTGTGGCATAGCCA
1 CCAGATACAAATAA-TGTGGCAGAGCCA
7634758 CCAG
1 CCAG
7634762 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
26 6 0.08
27 51 0.70
28 16 0.22
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (27 bp):
CCAGATACAAATAATGTGGCAGAGCCA
Found at i:7634750 original size:54 final size:54
Alignment explanation
Indices: 7634650--7634761 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
7634640 AGCATGGCTG
*
7634650 CCAGAACAGATAATGTGACAGAGTCACCAGATACAAATAATCGTGGCAGAACCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAACCA
* * * * *
7634704 CCAGTACAGATATATGTGGCAGAGCCACCAGAT-CAAATAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAACCA
7634758 CCAG
1 CCAG
7634762 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAACCA
Found at i:7634906 original size:25 final size:25
Alignment explanation
Indices: 7634860--7634911 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
7634850 TCAGACTAAA
* *
7634860 TTAACCCTAGGGGCATATTGGTCAT
1 TTAAACCTAGGGGCATATTGGTAAT
*
7634885 TTAAACCTAGGGGTATCA-TGGTAAT
1 TTAAACCTAGGGGCAT-ATTGGTAAT
7634910 TT
1 TT
7634912 TCCATACATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 22 0.96
26 1 0.04
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
TTAAACCTAGGGGCATATTGGTAAT
Found at i:7636247 original size:24 final size:24
Alignment explanation
Indices: 7636179--7636249 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
7636169 CTAGATTTCC
** *
7636179 TCCCTTATCTGCTCCTAAATACTA
1 TCCCTTATCAACTCCTAAATCCTA
7636203 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
7636227 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
7636250 CTCCTGACAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.27, C:0.37, G:0.01, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:7637935 original size:48 final size:48
Alignment explanation
Indices: 7637864--7637985 Score: 165
Period size: 48 Copynumber: 2.5 Consensus size: 48
7637854 TAAACTGCTA
*
7637864 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATAGAAGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAAT-GAAGCTG
** ** *
7637912 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATAATGTGGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAATGAAGCTG
*
7637960 ATGCCATGTCCCACACATGGTCTTAC
1 ATGCCATGTCCCAGACATGGTCTTAC
7637986 TGTAACACCC
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
48 64 0.97
49 2 0.03
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAATGAAGCTG
Found at i:7639366 original size:27 final size:27
Alignment explanation
Indices: 7639335--7639512 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
7639325 ATATTGAGTC
* *
7639335 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
7639362 TGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
7639389 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
7639417 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* ***
7639444 CGCACACTTAGTGC-ATCATATTCGTTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
7639471 CGTACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
7639498 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
7639513 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 99 0.80
28 24 0.20
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:7647174 original size:28 final size:29
Alignment explanation
Indices: 7647115--7647209 Score: 90
Period size: 28 Copynumber: 3.4 Consensus size: 29
7647105 CTTCGATGTC
* ** * *
7647115 TCGCACACTATGTACCATACTCGATAC-C
1 TCGCACACTAAGTGTCATCCTCGATACTT
* *
7647143 TCGCACACTAAGTG-CTATTCTGGAT-CTT
1 TCGCACACTAAGTGTC-ATCCTCGATACTT
7647171 TCGCACACTAAGTGTCATCCTCGATACTT
1 TCGCACACTAAGTGTCATCCTCGATACTT
7647200 T-GCACACTAA
1 TCGCACACTAA
7647210 TTTCCATTTA
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
27 2 0.04
28 49 0.88
29 5 0.09
ACGTcount: A:0.26, C:0.31, G:0.14, T:0.29
Consensus pattern (29 bp):
TCGCACACTAAGTGTCATCCTCGATACTT
Found at i:7653263 original size:33 final size:33
Alignment explanation
Indices: 7653220--7653283 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
7653210 CTTTCCTTTC
*
7653220 TTCTCCTATTCGGCCATAAAGATGAAAAATGCA
1 TTCTCATATTCGGCCATAAAGATGAAAAATGCA
*
7653253 TTCTCATATTCGGCCATAAAGATGAAGAATG
1 TTCTCATATTCGGCCATAAAGATGAAAAATG
7653284 TATGTTTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (33 bp):
TTCTCATATTCGGCCATAAAGATGAAAAATGCA
Found at i:7661942 original size:23 final size:24
Alignment explanation
Indices: 7661907--7661992 Score: 102
Period size: 25 Copynumber: 3.5 Consensus size: 24
7661897 GTGAATCGGT
* *
7661907 ATGCTCACTCGAGCTGTAAATTGG
1 ATGCTCTCACGAGCTGTAAATTGG
**
7661931 A-GCTCTCACGAGCTGTAAATCTAT
1 ATGCTCTCACGAGCTGTAAAT-TGG
*
7661955 ATGCTCTCACGAGCTATAAATTGG
1 ATGCTCTCACGAGCTGTAAATTGG
7661979 TATGCTCTCACGAG
1 -ATGCTCTCACGAG
7661993 TTGTGGGTCA
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
23 17 0.33
24 4 0.08
25 31 0.60
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (24 bp):
ATGCTCTCACGAGCTGTAAATTGG
Found at i:7668513 original size:29 final size:29
Alignment explanation
Indices: 7668442--7668553 Score: 140
Period size: 29 Copynumber: 3.9 Consensus size: 29
7668432 ACCCCTACAT
*
7668442 ACATGCATATGGCCCACTT-GGCCCAA-TC
1 ACATTCATATGGCCCA-TTAGGCCCAATTC
* *
7668470 TCATTCATATAGCCCATCT-GGCCCAATTC
1 ACATTCATATGGCCCAT-TAGGCCCAATTC
7668499 ACATTCATATGGCCCATTAGGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAATTC
* *
7668528 ATATTCATATGACCCATTAGGCCCAA
1 ACATTCATATGGCCCATTAGGCCCAA
7668554 AACACCTTTA
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
27 1 0.01
28 22 0.30
29 51 0.69
ACGTcount: A:0.28, C:0.32, G:0.13, T:0.27
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAATTC
Found at i:7670004 original size:15 final size:14
Alignment explanation
Indices: 7669981--7670016 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
7669971 AAATAATCCA
*
7669981 AATAAAAATGAATT
1 AATAAAAATGAATG
7669995 AATAAGAAATGAATG
1 AATAA-AAATGAATG
7670010 AATAAAA
1 AATAAAA
7670017 GAATAAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.67, C:0.00, G:0.11, T:0.22
Consensus pattern (14 bp):
AATAAAAATGAATG
Found at i:7671295 original size:24 final size:24
Alignment explanation
Indices: 7671268--7671364 Score: 113
Period size: 24 Copynumber: 4.0 Consensus size: 24
7671258 GAAATGATTT
7671268 TGGCACTATGTGTGCAAATTTGAA
1 TGGCACTATGTGTGCAAATTTGAA
* *
7671292 TGGCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCAAATTTGAA
* *** *
7671316 CGGCACTATGTGTGTGGATTTGTA
1 TGGCACTATGTGTGCAAATTTGAA
* *
7671340 TGGCACTATATGTGCAGATTTGAA
1 TGGCACTATGTGTGCAAATTTGAA
7671364 T
1 T
7671365 ATCAATATGT
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 63 1.00
ACGTcount: A:0.24, C:0.12, G:0.28, T:0.36
Consensus pattern (24 bp):
TGGCACTATGTGTGCAAATTTGAA
Found at i:7671393 original size:72 final size:72
Alignment explanation
Indices: 7671268--7671401 Score: 178
Period size: 72 Copynumber: 1.9 Consensus size: 72
7671258 GAAATGATTT
* * * * ** *
7671268 TGGCACTATGTGTGCAAATTTGAATGGCACTATGTGTGCGAATTTGTACGGCACTATGTGTGTGG
1 TGGCACTATATGTGCAAATTTGAATAGCAATATGTATGCGAATTACTAAGGCACTATGTGTGTGG
7671333 ATTTGTA
66 ATTTGTA
* * *
7671340 TGGCACTATATGTGCAGATTTGAATATCAATATGTATGTGAATTACTAAGGCACTATGTGTG
1 TGGCACTATATGTGCAAATTTGAATAGCAATATGTATGCGAATTACTAAGGCACTATGTGTG
7671402 CAGGTAAACA
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
72 52 1.00
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.36
Consensus pattern (72 bp):
TGGCACTATATGTGCAAATTTGAATAGCAATATGTATGCGAATTACTAAGGCACTATGTGTGTGG
ATTTGTA
Found at i:7676208 original size:29 final size:28
Alignment explanation
Indices: 7676162--7676259 Score: 126
Period size: 29 Copynumber: 3.4 Consensus size: 28
7676152 TGGCCTACTT
* *
7676162 GGCCCAA-TCTCATTCATATAGCCCATCA
1 GGCCCAATTCACATTCATAT-GCCCATTA
7676190 GGCCCAATTCACATTCATATGGCCCATTA
1 GGCCCAATTCACATTCATAT-GCCCATTA
*
7676219 GGCCCAATTCATATTCATATGACCCATTA
1 GGCCCAATTCACATTCATATG-CCCATTA
*
7676248 GGCCCAAATCAC
1 GGCCCAATTCAC
7676260 CTTTCTATTC
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
28 8 0.13
29 54 0.87
ACGTcount: A:0.30, C:0.33, G:0.12, T:0.26
Consensus pattern (28 bp):
GGCCCAATTCACATTCATATGCCCATTA
Found at i:7676251 original size:58 final size:57
Alignment explanation
Indices: 7676149--7676259 Score: 138
Period size: 58 Copynumber: 1.9 Consensus size: 57
7676139 ACATGCATGA
* *
7676149 ATATGGCCTACTTGGCCCAATCTCATTCATATAGCCCATCAGGCCCAATTCACATTC
1 ATATGGCCCACTTGGCCCAATCTCATTCATATAGCCCATCAGGCCCAAATCACATTC
*
7676206 ATATGGCCCA-TTAGGCCCAAT-TCATATTCATAT-GACCCATTAGGCCCAAATCAC
1 ATATGGCCCACTT-GGCCCAATCTC--ATTCATATAG-CCCATCAGGCCCAAATCAC
7676260 CTTTCTATTC
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
56 4 0.09
57 18 0.38
58 25 0.53
ACGTcount: A:0.29, C:0.32, G:0.13, T:0.27
Consensus pattern (57 bp):
ATATGGCCCACTTGGCCCAATCTCATTCATATAGCCCATCAGGCCCAAATCACATTC
Found at i:7676521 original size:24 final size:24
Alignment explanation
Indices: 7676481--7676546 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 24
7676471 CAGCCAAACT
* *
7676481 TTCAGCTCTTC-AGCTTTTCGGTAT
1 TTCAGCTTTTCGA-CTTTTCGGTAA
*
7676505 TTCGGCTTTTCGACTTTTCGGTAA
1 TTCAGCTTTTCGACTTTTCGGTAA
*
7676529 TTCAGCTTTTCGGCTTTT
1 TTCAGCTTTTCGACTTTT
7676547 GCCAATCTAC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
24 35 0.97
25 1 0.03
ACGTcount: A:0.11, C:0.23, G:0.18, T:0.48
Consensus pattern (24 bp):
TTCAGCTTTTCGACTTTTCGGTAA
Found at i:7676523 original size:16 final size:16
Alignment explanation
Indices: 7676480--7676546 Score: 50
Period size: 16 Copynumber: 4.2 Consensus size: 16
7676470 GCAGCCAAAC
* *
7676480 TTTCAGCTCTTCAGCT
1 TTTCAGCTTTTCGGCT
*
7676496 TTTC-GGTATTTCGGCT
1 TTTCAGCT-TTTCGGCT
7676512 TTTC-GACTTTTCGG-T
1 TTTCAG-CTTTTCGGCT
*
7676527 AATTCAGCTTTTCGGCT
1 -TTTCAGCTTTTCGGCT
7676544 TTT
1 TTT
7676547 GCCAATCTAC
Statistics
Matches: 40, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
15 3 0.08
16 34 0.85
17 3 0.08
ACGTcount: A:0.10, C:0.22, G:0.18, T:0.49
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCT
Found at i:7678140 original size:26 final size:27
Alignment explanation
Indices: 7678111--7678234 Score: 94
Period size: 27 Copynumber: 4.6 Consensus size: 27
7678101 TTAGTTTACC
*
7678111 AAATTACTGAAATACCCCCAG-TAGTA
1 AAATTACCGAAATACCCCCAGTTAGTA
*
7678137 AAATTACC-AAAGTACCCCCGGTTTA-TA
1 AAATTACCGAAA-TACCCCCAG-TTAGTA
* * ** *
7678164 AAATTACCCAAATA-TCCTTGATTTGTA
1 AAATTACCGAAATACCCCCAG-TTAGTA
* * *
7678191 AAATTACCGAAATACCCTCAGTTTGAA
1 AAATTACCGAAATACCCCCAGTTAGTA
*
7678218 AAATTACTGAAATACCC
1 AAATTACCGAAATACCC
7678235 TTGACTTGTA
Statistics
Matches: 78, Mismatches: 14, Indels: 11
0.76 0.14 0.11
Matches are distributed among these distances:
25 3 0.04
26 20 0.26
27 48 0.62
28 7 0.09
ACGTcount: A:0.40, C:0.23, G:0.10, T:0.27
Consensus pattern (27 bp):
AAATTACCGAAATACCCCCAGTTAGTA
Found at i:7678192 original size:27 final size:26
Alignment explanation
Indices: 7678162--7678250 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 26
7678152 CCCCGGTTTA
*
7678162 TAAAATTACCCAAATATCCTTGATTTG
1 TAAAATTACCGAAATA-CCTTGATTTG
* *
7678189 TAAAATTACCGAAATACCCTCAGTTTG
1 TAAAATTACCGAAATACCTTGA-TTTG
* * *
7678216 AAAAATTACTGAAATACCCTTGACTTG
1 TAAAATTACCGAAATA-CCTTGATTTG
7678243 TAAAATTA
1 TAAAATTA
7678251 TGAAAGTACC
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
26 4 0.08
27 43 0.84
28 4 0.08
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (26 bp):
TAAAATTACCGAAATACCTTGATTTG
Found at i:7678274 original size:27 final size:27
Alignment explanation
Indices: 7678190--7678306 Score: 89
Period size: 27 Copynumber: 4.3 Consensus size: 27
7678180 CTTGATTTGT
* *
7678190 AAAATTACCGAAATACCCTC-AGTTTGA-
1 AAAATTACTGAAATACCCTCGA-ATT-AC
* * **
7678217 AAAATTACTGAAATACCCTTGACTTGT
1 AAAATTACTGAAATACCCTCGAATTAC
7678244 AAAATTA-TGAAAGTACCCTCGAATTAC
1 AAAATTACTGAAA-TACCCTCGAATTAC
**
7678271 AAAATTACT-ATTTTACCCTCGAATTAC
1 AAAATTACTGA-AATACCCTCGAATTAC
*
7678298 AGAATTACT
1 AAAATTACT
7678307 ATTTTACCCT
Statistics
Matches: 74, Mismatches: 11, Indels: 10
0.78 0.12 0.11
Matches are distributed among these distances:
26 5 0.07
27 67 0.91
28 2 0.03
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTCGAATTAC
Found at i:7678275 original size:54 final size:54
Alignment explanation
Indices: 7678105--7678279 Score: 160
Period size: 54 Copynumber: 3.3 Consensus size: 54
7678095 AATACTTTAG
* ** * * * * *
7678105 TTTACCAAATTACTGAAATACCC-CCAGTAGTAAAATTACCAAAGTACCCCCGG
1 TTTACAAAATTACTGAAATACCCTTGACTTGTAAAATTACGAAAGTACCCTCGA
* ** * *
7678158 TTTATAAAATTACCCAAATATCCTTGATTTGTAAAATTACCGAAA-TACCCTC-A
1 TTTACAAAATTACTGAAATACCCTTGACTTGTAAAATTA-CGAAAGTACCCTCGA
*
7678211 GTTTGA-AAAATTACTGAAATACCCTTGACTTGTAAAATTATGAAAGTACCCTCGA
1 -TTT-ACAAAATTACTGAAATACCCTTGACTTGTAAAATTACGAAAGTACCCTCGA
*
7678266 ATTACAAAATTACT
1 TTTACAAAATTACT
7678280 ATTTTACCCT
Statistics
Matches: 97, Mismatches: 18, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
53 23 0.24
54 68 0.70
55 6 0.06
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (54 bp):
TTTACAAAATTACTGAAATACCCTTGACTTGTAAAATTACGAAAGTACCCTCGA
Found at i:7678307 original size:27 final size:27
Alignment explanation
Indices: 7678257--7678855 Score: 644
Period size: 27 Copynumber: 22.2 Consensus size: 27
7678247 ATTATGAAAG
* *
7678257 TACCCTCGAATTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
7678284 TACCCTCGAATTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * *
7678311 TACCCTCGATTGACAGAATTATTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * *
7678338 TACCCTTGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
** *
7678365 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
**
7678392 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
7678419 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
7678446 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
7678473 TACCATCGATTTATAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * * *
7678500 TACCTTCAATTTATAAAATTATTGTTC
1 TACCCTCGATTTACAAAATTACTGTTT
* * **
7678527 TACCCTCGATTGACATAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * *
7678554 TATCCTCGATTGATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
7678581 CACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
7678608 TACCCTCGATTTAGAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * *
7678635 TACCTTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
7678662 TACCCTTGATTTACAAAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
7678689 TACCCTCAATTTACATAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTT
* * *
7678716 TACCCTCGATTGACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
7678743 TACCGTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
7678770 TACCCTCTATTTAAAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
7678797 TACCCTCGATTTACAGAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTT
* **
7678824 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
7678851 TACCC
1 TACCC
7678856 CTAGGGTGTT
Statistics
Matches: 489, Mismatches: 79, Indels: 8
0.85 0.14 0.01
Matches are distributed among these distances:
26 2 0.00
27 486 0.99
28 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:7679136 original size:27 final size:26
Alignment explanation
Indices: 7679092--7679143 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
7679082 CTCGTTGCAA
*
7679092 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
7679119 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
7679144 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:7679224 original size:27 final size:27
Alignment explanation
Indices: 7679184--7679243 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
7679174 ACATATATAT
* *
7679184 ATATCT-TTTCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
7679210 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
7679237 ATATCTG
1 ATATCTG
7679244 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 6 0.21
27 22 0.79
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:7679396 original size:31 final size:31
Alignment explanation
Indices: 7679361--7679430 Score: 104
Period size: 31 Copynumber: 2.3 Consensus size: 31
7679351 TTGCATTCAC
*
7679361 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* *
7679392 ATTCTAATTCTGATTCTGTTACCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
*
7679423 GTTCTGAT
1 ATTCTGAT
7679431 AATGTTTCTT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.19, C:0.17, G:0.16, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:7679409 original size:6 final size:6
Alignment explanation
Indices: 7679361--7679430 Score: 54
Period size: 6 Copynumber: 11.3 Consensus size: 6
7679351 TTGCATTCAC
* * *
7679361 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTA ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
7679410 -TTACCTG ATTCTG GTTCTG AT
1 ATT--CTG ATTCTG ATTCTG AT
7679431 AATGTTTCTT
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
5 4 0.08
6 37 0.74
7 6 0.12
8 3 0.06
ACGTcount: A:0.19, C:0.17, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:7679436 original size:25 final size:25
Alignment explanation
Indices: 7679389--7679436 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
7679379 TTACCTGATA
**
7679389 CTGATTCTAATTCTGATTCTGTTAC
1 CTGATTCTAATTCTGATAATGTTAC
**
7679414 CTGATTCTGGTTCTGATAATGTT
1 CTGATTCTAATTCTGATAATGTT
7679437 TCTTATTCTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.48
Consensus pattern (25 bp):
CTGATTCTAATTCTGATAATGTTAC
Found at i:7682451 original size:25 final size:25
Alignment explanation
Indices: 7682343--7682454 Score: 136
Period size: 25 Copynumber: 4.5 Consensus size: 25
7682333 TCCTGTATAT
*
7682343 GTATGCTCAT-ACGAGCTATGAATCG
1 GTATGCTC-TCACGAGCTATAAATCG
* * *
7682368 ATATGCTCACTCGAGCTATAAATCG
1 GTATGCTCTCACGAGCTATAAATCG
* *
7682393 GTGTGCTCTCACAAGCTATAAATCG
1 GTATGCTCTCACGAGCTATAAATCG
* *
7682418 GTATGCTCTCACGAGCTGTAAATCA
1 GTATGCTCTCACGAGCTATAAATCG
7682443 GTATGCTCTCAC
1 GTATGCTCTCAC
7682455 AAGTTTGGGT
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
25 73 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (25 bp):
GTATGCTCTCACGAGCTATAAATCG
Found at i:7686486 original size:13 final size:13
Alignment explanation
Indices: 7686449--7686489 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
7686439 ATACTATTAA
7686449 TTATTTGTAAAAT
1 TTATTTGTAAAAT
*
7686462 TTATTAT-CAAAAT
1 TTATT-TGTAAAAT
7686475 TTATTTGTAAAAT
1 TTATTTGTAAAAT
7686488 TT
1 TT
7686490 GAATATATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
12 1 0.04
13 22 0.92
14 1 0.04
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54
Consensus pattern (13 bp):
TTATTTGTAAAAT
Found at i:7686962 original size:79 final size:79
Alignment explanation
Indices: 7686874--7687033 Score: 320
Period size: 79 Copynumber: 2.0 Consensus size: 79
7686864 TTTTCATCCT
7686874 ACCATCCTGGTTCGTTCGTTATAATAGACAATCTCATTATTTTTATCTCGTCCAAACTATTATCA
1 ACCATCCTGGTTCGTTCGTTATAATAGACAATCTCATTATTTTTATCTCGTCCAAACTATTATCA
7686939 CCTATTCAAAGATA
66 CCTATTCAAAGATA
7686953 ACCATCCTGGTTCGTTCGTTATAATAGACAATCTCATTATTTTTATCTCGTCCAAACTATTATCA
1 ACCATCCTGGTTCGTTCGTTATAATAGACAATCTCATTATTTTTATCTCGTCCAAACTATTATCA
7687018 CCTATTCAAAGATA
66 CCTATTCAAAGATA
7687032 AC
1 AC
7687034 GCAGTGTATA
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 81 1.00
ACGTcount: A:0.31, C:0.23, G:0.09, T:0.38
Consensus pattern (79 bp):
ACCATCCTGGTTCGTTCGTTATAATAGACAATCTCATTATTTTTATCTCGTCCAAACTATTATCA
CCTATTCAAAGATA
Found at i:7692281 original size:35 final size:35
Alignment explanation
Indices: 7692242--7692311 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
7692232 GACTTTGTTA
7692242 ATCTATCAATAATAACTCAGATCAAATCTTTCTTT
1 ATCTATCAATAATAACTCAGATCAAATCTTTCTTT
*
7692277 ATCTATCAATAATAACTCAGATCGAATCTTTCTTT
1 ATCTATCAATAATAACTCAGATCAAATCTTTCTTT
7692312 CTCAGTGATA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.36, C:0.20, G:0.04, T:0.40
Consensus pattern (35 bp):
ATCTATCAATAATAACTCAGATCAAATCTTTCTTT
Found at i:7696034 original size:40 final size:40
Alignment explanation
Indices: 7695952--7696058 Score: 108
Period size: 40 Copynumber: 2.6 Consensus size: 40
7695942 TATGTTTGGA
*
7695952 ACTTAGTGTGCGTTTCGAGATAGCTTCGGCTATATACAGC
1 ACTTAGTGTGCGATTCGAGATAGCTTCGGCTATATACAGC
* * ***
7695992 ACTTAGTGTGCGAATTGGA-ATAGCTTCGGCTTTATGTGGC
1 ACTTAGTGTGCG-ATTCGAGATAGCTTCGGCTATATACAGC
* * *
7696032 ACTAAGTGTACGATACTGAGATAGCTT
1 ACTTAGTGTGCGATTC-GAGATAGCTT
7696059 TTGTTTAATG
Statistics
Matches: 54, Mismatches: 10, Indels: 5
0.78 0.14 0.07
Matches are distributed among these distances:
39 2 0.04
40 41 0.76
41 11 0.20
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (40 bp):
ACTTAGTGTGCGATTCGAGATAGCTTCGGCTATATACAGC
Found at i:7699499 original size:38 final size:38
Alignment explanation
Indices: 7699457--7699549 Score: 105
Period size: 38 Copynumber: 2.4 Consensus size: 38
7699447 TAAAGACCCT
* *
7699457 CAGGCTTCGTGCTGGTAAAATATTCAGGTTAAATCCCG
1 CAGGCTTCGTGCTGGTAAAATATCCAGGATAAATCCCG
* ** *
7699495 CAGGCTTCATGCTGGTATTATATCCGGGATAAATCCCG
1 CAGGCTTCGTGCTGGTAAAATATCCAGGATAAATCCCG
* * *
7699533 TAGGCCTAGTGCTGGTA
1 CAGGCTTCGTGCTGGTA
7699550 TTATATTCGG
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
38 45 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.29
Consensus pattern (38 bp):
CAGGCTTCGTGCTGGTAAAATATCCAGGATAAATCCCG
Found at i:7699550 original size:38 final size:38
Alignment explanation
Indices: 7699486--7699560 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
7699476 ATATTCAGGT
*
7699486 TAAATCCCGCAGGCTTCATGCTGGTATTATATCCGGGA
1 TAAATCCCGCAGGCCTCATGCTGGTATTATATCCGGGA
* *
7699524 TAAATCCCGTAGGCCT-AGTGCTGGTATTATATTCGGG
1 TAAATCCCGCAGGCCTCA-TGCTGGTATTATATCCGGG
7699561 CCTTCGTGCC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (38 bp):
TAAATCCCGCAGGCCTCATGCTGGTATTATATCCGGGA
Found at i:7699630 original size:43 final size:43
Alignment explanation
Indices: 7699553--7699634 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
7699543 GCTGGTATTA
* **
7699553 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGATGTG
7699596 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
7699635 AATGATATGT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.12, C:0.26, G:0.34, T:0.28
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGATGTG
Found at i:7702994 original size:54 final size:54
Alignment explanation
Indices: 7702935--7703049 Score: 133
Period size: 54 Copynumber: 2.1 Consensus size: 54
7702925 TTTGATTATT
*
7702935 TCACATGACCATGT-ACACAGACCGTGTAACTAACTATGCCCGTGTAAAATAAGG
1 TCACATGACCATGTGAC-CAGACCGTGTAACTAACTATGCCCATGTAAAATAAGG
** * * * * *
7702989 TCACATGGTCGTGTGGCCAGGCTGTGTAACTAACTGTGCCCATGTAAAATAAGG
1 TCACATGACCATGTGACCAGACCGTGTAACTAACTATGCCCATGTAAAATAAGG
*
7703043 TTACATG
1 TCACATG
7703050 GCCGTTTGGC
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 50 0.98
55 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (54 bp):
TCACATGACCATGTGACCAGACCGTGTAACTAACTATGCCCATGTAAAATAAGG
Found at i:7703050 original size:54 final size:54
Alignment explanation
Indices: 7702958--7703088 Score: 172
Period size: 54 Copynumber: 2.4 Consensus size: 54
7702948 TACACAGACC
* * *
7702958 GTGTAACTAACTATGCCCGTGTAAAATAAGGTCACATGGTCGTGTGGCCAGGCT
1 GTGTAACTAACTGTGCCCATGTAAAATAAGGTCACATGGCCGTGTGGCCAGGCT
* * * *
7703012 GTGTAACTAACTGTGCCCATGTAAAATAAGGTTACATGGCCGTTTGGCTAGGGT
1 GTGTAACTAACTGTGCCCATGTAAAATAAGGTCACATGGCCGTGTGGCCAGGCT
* * *
7703066 ATGTAACTCACTGTGACCATGTA
1 GTGTAACTAACTGTGCCCATGTA
7703089 GCTCACGATC
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 67 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (54 bp):
GTGTAACTAACTGTGCCCATGTAAAATAAGGTCACATGGCCGTGTGGCCAGGCT
Found at i:7705934 original size:131 final size:131
Alignment explanation
Indices: 7705690--7706118 Score: 637
Period size: 131 Copynumber: 3.3 Consensus size: 131
7705680 GGTTGTTACA
* *
7705690 ATTAAGGCTCGGTGATTTACAATCACAGCCTAAGTTCATTTGATTTACTATCATGAACAATCTTT
1 ATTAAGGCTCGTTGATTTACAATCATAGCCTAAGTTCATTTGATTTACTATCATGAACAAT-TTT
* * * *
7705755 -TCTGAGTTAGTTGATTTACTATCGCTACTCCAAACATCTCAATGATTTAAGATCACAACTAATA
65 CTCTAAGTTAGTTGATTTACTATCGCTACTCCAAATAGCTCAATTATTTAAGATCACAACTAATA
7705819 TT
130 TT
* *
7705821 ATTAAGGCTCGTTGATTTACAATCATAACCTAAGTTCATTTGAGTTACTATCATGAACAATTTTC
1 ATTAAGGCTCGTTGATTTACAATCATAGCCTAAGTTCATTTGATTTACTATCATGAACAATTTTC
* * *
7705886 TCTAAGTTAGTTGATTTACTATTGCTGCTCCAAATAGCTCACTTATTTAAGATCACAACTAATAT
66 TCTAAGTTAGTTGATTTACTATCGCTACTCCAAATAGCTCAATTATTTAAGATCACAACTAATAT
7705951 T
131 T
* * *
7705952 ATTAAGGCTCGTTGATTTACTATCATAGCCTAAGTTCATTTGATTTACTCTCATGAACAATCTTC
1 ATTAAGGCTCGTTGATTTACAATCATAGCCTAAGTTCATTTGATTTACTATCATGAACAATTTTC
* *
7706017 TCTAAGTTAGTTGATTTACTATCGCTACTCCAAATAGCTC-GTTGATTTAAGATCACAACTGATA
66 TCTAAGTTAGTTGATTTACTATCGCTACTCCAAATAGCTCAATT-ATTTAAGATCACAACTAATA
7706081 TT
130 TT
* * * * *
7706083 ACTAAGGCTCATTGATTTACGATCACAGCTTAAGTT
1 ATTAAGGCTCGTTGATTTACAATCATAGCCTAAGTT
7706119 TATTAATTTG
Statistics
Matches: 271, Mismatches: 25, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
130 5 0.02
131 266 0.98
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.38
Consensus pattern (131 bp):
ATTAAGGCTCGTTGATTTACAATCATAGCCTAAGTTCATTTGATTTACTATCATGAACAATTTTC
TCTAAGTTAGTTGATTTACTATCGCTACTCCAAATAGCTCAATTATTTAAGATCACAACTAATAT
T
Found at i:7707022 original size:14 final size:14
Alignment explanation
Indices: 7706981--7707031 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
7706971 ATTTTCACCA
7706981 TCTTTCTTTGCTATTT
1 TCTTTCTTT-CT-TTT
**
7706997 T-TTTAGTTCTTTT
1 TCTTTCTTTCTTTT
7707010 TCTTTCTTTCTTTT
1 TCTTTCTTTCTTTT
*
7707024 TGTTTCTT
1 TCTTTCTT
7707032 GAATATTTTG
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
13 4 0.14
14 19 0.66
15 5 0.17
16 1 0.03
ACGTcount: A:0.04, C:0.16, G:0.06, T:0.75
Consensus pattern (14 bp):
TCTTTCTTTCTTTT
Found at i:7710260 original size:48 final size:48
Alignment explanation
Indices: 7710189--7711341 Score: 2119
Period size: 48 Copynumber: 24.0 Consensus size: 48
7710179 CAAGATAAAT
* * * * *
7710189 ATATATGTGTGTGGTAAAGCCGAATGGCTAGTGTGAAACATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
* * * *
7710237 ATATGTATATGTGGTAAAGCCGAATGGC-AGTGTGAAACATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
*
7710284 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
7710332 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
7710380 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
7710428 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
7710476 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
7710524 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
7710572 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
7710620 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
7710668 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
7710716 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
7710764 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
7710812 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
7710860 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
7710908 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
7710956 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
7711004 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
7711052 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
7711100 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
*
7711148 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
* *
7711196 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
* * *
7711244 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
* * * *
7711292 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
7711340 AT
1 AT
7711342 GTGTGTATAT
Statistics
Matches: 1087, Mismatches: 17, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 0.04
48 1040 0.96
ACGTcount: A:0.38, C:0.06, G:0.24, T:0.31
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
Found at i:7717969 original size:22 final size:22
Alignment explanation
Indices: 7717941--7717983 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
7717931 CCTCCAGAGT
7717941 TAGATCGCATCCATAACATCTG
1 TAGATCGCATCCATAACATCTG
*
7717963 TAGATCGCATCCATGACATCT
1 TAGATCGCATCCATAACATCT
7717984 TTCACGTGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (22 bp):
TAGATCGCATCCATAACATCTG
Found at i:7718630 original size:14 final size:14
Alignment explanation
Indices: 7718595--7718633 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
7718585 TTATTTGCAA
*
7718595 TTTTTTTAC-TTCT
1 TTTTTTTTCTTTCT
7718608 TTTTCTTTTCTTTCT
1 TTTT-TTTTCTTTCT
7718623 TTTTTTTTCTT
1 TTTTTTTTCTT
7718634 GAATGTTTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 4 0.17
14 11 0.48
15 8 0.35
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTTTTTCTTTCT
Found at i:7722531 original size:43 final size:43
Alignment explanation
Indices: 7722483--7722576 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
7722473 CCGGCATTAC
* **
7722483 GCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGTATGAA
1 GCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGCACCAA
*
7722526 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
1 GCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGCACCAA
7722569 GCCTGCTA
1 GCCTGCTA
7722577 TGTAACACCC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.30, C:0.34, G:0.23, T:0.13
Consensus pattern (43 bp):
GCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGCACCAA
Found at i:7722617 original size:26 final size:26
Alignment explanation
Indices: 7722581--7722631 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
7722571 CTGCTATGTA
7722581 ACACCCCGAACCCGAGACCGACACCG
1 ACACCCCGAACCCGAGACCGACACCG
*
7722607 ACACCCTGAACCCGAGACCGACACC
1 ACACCCCGAACCCGAGACCGACACC
7722632 AGAGTCGAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.49, G:0.18, T:0.02
Consensus pattern (26 bp):
ACACCCCGAACCCGAGACCGACACCG
Found at i:7724197 original size:29 final size:29
Alignment explanation
Indices: 7724134--7724201 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
7724124 TAATCAACCG
7724134 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
7724163 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
7724192 CGCACACTTA
1 CGCACACTTA
7724202 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:7724314 original size:174 final size:174
Alignment explanation
Indices: 7724023--7724350 Score: 611
Period size: 174 Copynumber: 1.9 Consensus size: 174
7724013 AACTCAAGGT
*
7724023 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
7724088 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
7724153 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
7724197 ACTTACCTTTTCCGCTGTCCAAAATTGACTTGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
7724262 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
7724327 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
7724351 TGTACAATTT
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:7724342 original size:29 final size:30
Alignment explanation
Indices: 7724303--7724381 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
7724293 CTTAATAATC
7724303 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
7724333 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
7724362 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
7724382 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:7732898 original size:43 final size:43
Alignment explanation
Indices: 7732837--7733075 Score: 460
Period size: 43 Copynumber: 5.6 Consensus size: 43
7732827 NNNNNNNNNN
* *
7732837 GAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCC
1 GAATACACATCACTGGCACCAAGCCTGCTAGGCACGAAGGCCC
7732880 GAATACACATCACTGGCACCAAGCCTGCTAGGCACGAAGGCCC
1 GAATACACATCACTGGCACCAAGCCTGCTAGGCACGAAGGCCC
7732923 GAATACACATCACTGGCACCAAGCCTGCTAGGCACGAAGGCCC
1 GAATACACATCACTGGCACCAAGCCTGCTAGGCACGAAGGCCC
7732966 GAATACACATCACTGGCACCAAGCCTGCTAGGCACGAAGGCCC
1 GAATACACATCACTGGCACCAAGCCTGCTAGGCACGAAGGCCC
7733009 GAATACACATCACTGGCACCAAGCCTGCTAGGCACGAAGGCCC
1 GAATACACATCACTGGCACCAAGCCTGCTAGGCACGAAGGCCC
7733052 GAATACACATCACTGGCACCAAGC
1 GAATACACATCACTGGCACCAAGC
7733076 AACACCATCG
Statistics
Matches: 194, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 194 1.00
ACGTcount: A:0.31, C:0.35, G:0.23, T:0.11
Consensus pattern (43 bp):
GAATACACATCACTGGCACCAAGCCTGCTAGGCACGAAGGCCC
Found at i:7735034 original size:40 final size:40
Alignment explanation
Indices: 7734961--7735170 Score: 280
Period size: 40 Copynumber: 5.2 Consensus size: 40
7734951 CTAACGGGGT
* * * * * *
7734961 TAAGTCCCAAAGACATTGGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
7735001 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
7735041 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTTCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
7735081 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * * *
7735121 TAAGTCCCGAAGGCATTTGCGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
*
7735161 TAAGACCCGA
1 TAAGTCCCGA
7735171 CGACCTTGTG
Statistics
Matches: 156, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 2 0.01
40 154 0.99
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:7736586 original size:43 final size:43
Alignment explanation
Indices: 7736525--7737453 Score: 1795
Period size: 43 Copynumber: 21.6 Consensus size: 43
7736515 CAGGCATTAC
* *
7736525 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
7736568 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
* *
7736611 GCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
*
7736654 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
7736697 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
7736740 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
7736783 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
7736826 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
7736869 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
7736912 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
7736955 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
7736998 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
7737041 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
7737084 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
7737127 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
7737170 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
7737213 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
7737256 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
7737299 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
7737342 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
* *
7737385 GCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
7737428 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
7737454 TAATACCAGC
Statistics
Matches: 878, Mismatches: 8, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 878 1.00
ACGTcount: A:0.30, C:0.36, G:0.23, T:0.10
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
Found at i:7737500 original size:38 final size:38
Alignment explanation
Indices: 7737446--7737529 Score: 132
Period size: 38 Copynumber: 2.2 Consensus size: 38
7737436 GGCACGAAGG
* * *
7737446 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
7737484 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
7737522 CCCGAATA
1 CCCGAATA
7737530 CACATCAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.20
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:7746070 original size:16 final size:16
Alignment explanation
Indices: 7746049--7746080 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
7746039 TATAATAAGA
7746049 TATAAAGCAAAAATGG
1 TATAAAGCAAAAATGG
7746065 TATAAAGCAAAAATGG
1 TATAAAGCAAAAATGG
7746081 GAATGGAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.19, T:0.19
Consensus pattern (16 bp):
TATAAAGCAAAAATGG
Found at i:7747217 original size:18 final size:20
Alignment explanation
Indices: 7747191--7747227 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
7747181 TATAATAAAT
7747191 TTTTAATAAA-TTCTAAAAA
1 TTTTAATAAATTTCTAAAAA
7747210 TTTT-ATAAATTTCTAAAA
1 TTTTAATAAATTTCTAAAA
7747228 GTAAAGGGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (20 bp):
TTTTAATAAATTTCTAAAAA
Done.