Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 25 of 235
Found at i:7748919 original size:51 final size:51
Alignment explanation
Indices: 7748855--7748956 Score: 179
Period size: 51 Copynumber: 2.0 Consensus size: 51
7748845 GGGGACACAC
*
7748855 GCCGTGTGGCCCGGCCG-GTTGTCTCACACGGCAAAAGACACGCCCATGTCA
1 GCCGTGTGCCCCGGCCGTG-TGTCTCACACGGCAAAAGACACGCCCATGTCA
7748906 GCCGTGTGCCCCGGCCGTGTGTCTCACACGGCAAAAGACACGCCCATGTCA
1 GCCGTGTGCCCCGGCCGTGTGTCTCACACGGCAAAAGACACGCCCATGTCA
7748957 TAGGCCTTGT
Statistics
Matches: 49, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
51 48 0.98
52 1 0.02
ACGTcount: A:0.20, C:0.36, G:0.28, T:0.16
Consensus pattern (51 bp):
GCCGTGTGCCCCGGCCGTGTGTCTCACACGGCAAAAGACACGCCCATGTCA
Found at i:7749311 original size:53 final size:53
Alignment explanation
Indices: 7749231--7749336 Score: 187
Period size: 53 Copynumber: 2.0 Consensus size: 53
7749221 AATTTAACAT
7749231 CAGGGCACATACGACCGTGTAACATAACCGGGTGTCACGC-CGGGCTGAGACAC
1 CAGGGCACATACGACCGTGTAACATAACCGGGTGTCACGCAC-GGCTGAGACAC
*
7749284 CAGGGCACATACGACCGTGTAACATAACCGTGTGTCACGCACGGCTGAGACAC
1 CAGGGCACATACGACCGTGTAACATAACCGGGTGTCACGCACGGCTGAGACAC
7749337 ACGCCCGTGT
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
53 50 0.98
54 1 0.02
ACGTcount: A:0.27, C:0.30, G:0.28, T:0.14
Consensus pattern (53 bp):
CAGGGCACATACGACCGTGTAACATAACCGGGTGTCACGCACGGCTGAGACAC
Found at i:7750446 original size:43 final size:43
Alignment explanation
Indices: 7750398--7750505 Score: 162
Period size: 43 Copynumber: 2.5 Consensus size: 43
7750388 GATTAACGAG
7750398 ATGTGAATATGTGTAAGACCATGTCTGGGACATTGGCATCATT
1 ATGTGAATATGTGTAAGACCATGTCTGGGACATTGGCATCATT
* * *
7750441 ATGTGACTATGTGTAAAACCATGTCTGGGACATTGGCATCGTT
1 ATGTGAATATGTGTAAGACCATGTCTGGGACATTGGCATCATT
* * *
7750484 ATTTGATTTTGTGTAAGACCAT
1 ATGTGAATATGTGTAAGACCAT
7750506 AGCTAGGCTA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (43 bp):
ATGTGAATATGTGTAAGACCATGTCTGGGACATTGGCATCATT
Found at i:7750905 original size:60 final size:59
Alignment explanation
Indices: 7750820--7750935 Score: 196
Period size: 60 Copynumber: 1.9 Consensus size: 59
7750810 TTCATGTAGT
* *
7750820 AATTTTATTGTATATGGTTTACTAAGCTTTTAAAGCTTACTTTGTGTGTTCTTTCCGGC
1 AATTTTATTGGATATGGCTTACTAAGCTTTTAAAGCTTACTTTGTGTGTTCTTTCCGGC
*
7750879 AATTTTATTTGGATATGGCTTACTAAGCTTTTAAAGTTTACTTTGTGTGTTCTTTCC
1 AATTTTA-TTGGATATGGCTTACTAAGCTTTTAAAGCTTACTTTGTGTGTTCTTTCC
7750936 TTGTTCTTTA
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
59 7 0.13
60 46 0.87
ACGTcount: A:0.21, C:0.13, G:0.16, T:0.50
Consensus pattern (59 bp):
AATTTTATTGGATATGGCTTACTAAGCTTTTAAAGCTTACTTTGTGTGTTCTTTCCGGC
Found at i:7752779 original size:68 final size:68
Alignment explanation
Indices: 7752698--7752828 Score: 262
Period size: 68 Copynumber: 1.9 Consensus size: 68
7752688 CCTAAGTGCC
7752698 AATATATATATAGCCGAAGCTATCTCAATAAGTCTTGCACCGAAGTGCCAATACATAGCTGAACG
1 AATATATATATAGCCGAAGCTATCTCAATAAGTCTTGCACCGAAGTGCCAATACATAGCTGAACG
7752763 TAT
66 TAT
7752766 AATATATATATAGCCGAAGCTATCTCAATAAGTCTTGCACCGAAGTGCCAATACATAGCTGAA
1 AATATATATATAGCCGAAGCTATCTCAATAAGTCTTGCACCGAAGTGCCAATACATAGCTGAA
7752829 GCTATCTCAA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 63 1.00
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (68 bp):
AATATATATATAGCCGAAGCTATCTCAATAAGTCTTGCACCGAAGTGCCAATACATAGCTGAACG
TAT
Found at i:7754986 original size:30 final size:30
Alignment explanation
Indices: 7754950--7755008 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
7754940 AAACACAAAA
7754950 ACGAAGCACATCTTCGAGAATCTGAATTAG
1 ACGAAGCACATCTTCGAGAATCTGAATTAG
7754980 ACGAAGCACATCTTCGAGAATCTGAATTA
1 ACGAAGCACATCTTCGAGAATCTGAATTA
7755009 CTCTCTCAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (30 bp):
ACGAAGCACATCTTCGAGAATCTGAATTAG
Found at i:7758549 original size:36 final size:36
Alignment explanation
Indices: 7758509--7758577 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
7758499 TTAAACACTC
7758509 TACCGGTGTGCAAGAAAGTTCATCAAATACTCTGAT
1 TACCGGTGTGCAAGAAAGTTCATCAAATACTCTGAT
*
7758545 TACCGGTGTGTAAGAAAGTTCATCAAATACTCT
1 TACCGGTGTGCAAGAAAGTTCATCAAATACTCT
7758578 AATAGTGTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (36 bp):
TACCGGTGTGCAAGAAAGTTCATCAAATACTCTGAT
Found at i:7758930 original size:49 final size:49
Alignment explanation
Indices: 7758858--7758955 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
7758848 AGGTCTCGAA
*
7758858 TTTGATTCCGCTACTCCGTTAACGGAGGCAGGCGCATTACTTTCGACAT
1 TTTGATCCCGCTACTCCGTTAACGGAGGCAGGCGCATTACTTTCGACAT
*
7758907 TTTGATCCCGCTGCTCCGTTAACGGAGGCAGGCGCATTACTTTCGACAT
1 TTTGATCCCGCTACTCCGTTAACGGAGGCAGGCGCATTACTTTCGACAT
7758956 CATCAGCTAC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.19, C:0.28, G:0.23, T:0.30
Consensus pattern (49 bp):
TTTGATCCCGCTACTCCGTTAACGGAGGCAGGCGCATTACTTTCGACAT
Found at i:7765190 original size:30 final size:30
Alignment explanation
Indices: 7765156--7765215 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
7765146 ATTTAATACG
7765156 AACTTTGGAAAAATTAC-CTTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTT-CCCCTA
* * *
7765186 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTTCCCCTA
7765216 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 20 0.77
31 6 0.23
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTTCCCCTA
Found at i:7773357 original size:33 final size:33
Alignment explanation
Indices: 7773315--7773382 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
7773305 ACAACGCAAA
7773315 CATGTCATCATGTAACACGACCAATCAACTACT
1 CATGTCATCATGTAACACGACCAATCAACTACT
7773348 CATGTCATCATGTAACACGACCAATCAACTACT
1 CATGTCATCATGTAACACGACCAATCAACTACT
7773381 CA
1 CA
7773383 CAAGCACCAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.37, C:0.31, G:0.09, T:0.24
Consensus pattern (33 bp):
CATGTCATCATGTAACACGACCAATCAACTACT
Found at i:7786244 original size:80 final size:80
Alignment explanation
Indices: 7786111--7786366 Score: 412
Period size: 80 Copynumber: 3.2 Consensus size: 80
7786101 GATGATAACG
7786111 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
7786176 CGAGTTACTA-ATTCC
66 CGAGTTACTATA-TCC
7786191 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
7786256 CGAGTTACTATATCC
66 CGAGTTACTATATCC
** *
7786271 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGA
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGT
7786335 GCGAG-TAGCTATATCC
65 GCGAGTTA-CTATATCC
* *
7786351 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
7786367 TACTTGGTTT
Statistics
Matches: 168, Mismatches: 5, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
79 18 0.11
80 149 0.89
81 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
CGAGTTACTATATCC
Found at i:7786352 original size:40 final size:40
Alignment explanation
Indices: 7786111--7786340 Score: 401
Period size: 40 Copynumber: 5.8 Consensus size: 40
7786101 GATGATAACG
7786111 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
7786151 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
7786191 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
7786231 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
**
7786271 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
7786311 GGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
7786341 AGCTATATCC
Statistics
Matches: 184, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
39 2 0.01
40 182 0.99
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:7789194 original size:20 final size:20
Alignment explanation
Indices: 7789148--7789185 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7789138 ATCTCGTTTC
*
7789148 CAACTCACTCGAGCTCAAGT
1 CAACTCACTCAAGCTCAAGT
7789168 CAACTCACTCAAGCTCAA
1 CAACTCACTCAAGCTCAA
7789186 TTCAGCTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.37, G:0.11, T:0.18
Consensus pattern (20 bp):
CAACTCACTCAAGCTCAAGT
Found at i:7792966 original size:46 final size:46
Alignment explanation
Indices: 7792860--7793079 Score: 232
Period size: 46 Copynumber: 4.7 Consensus size: 46
7792850 TTATTTGTGT
* * * * *
7792860 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACG-AGA
1 GCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGATGTA-A
* * * *
7792908 GCTAGTGTAAGACATATCTAGCACATACATCGGCCTCGAGATGTAA
1 GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATGTAA
* * *
7792954 GCCAGTGTAAGACATGTTTGGGACATGCATTGGCCTCGAGATGTAA
1 GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATGTAA
7793000 GCCAGTGTAAGACATGTCTAGGACATGCATCGG-CTACGAGATGT--
1 GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCT-CGAGATGTAA
* *
7793044 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGC
7793080 ACCAGACCCT
Statistics
Matches: 146, Mismatches: 21, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
44 11 0.08
45 15 0.10
46 97 0.66
47 12 0.08
48 11 0.08
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATGTAA
Found at i:7793011 original size:92 final size:91
Alignment explanation
Indices: 7792857--7793076 Score: 266
Period size: 92 Copynumber: 2.4 Consensus size: 91
7792847 GGCTTATTTG
* *
7792857 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGAGCTAGTGTAAGACA
1 TGTGCCAGTGTAAGACCATGTCTGGGACAT-GCATCAGCATCGAGACGAGAGCCAGTGTAAGACA
7792922 TATCTAGCACATACATCGGCCT-CGAGA
65 TATCTAGCACATACATCGG-CTACGAGA
* ** * *
7792949 TGTAAGCCAGTGTAAGA-CATGTTTGGGACATGCATTGGCCTCGAGATGTA-AGCCAGTGTAAGA
1 TGT--GCCAGTGTAAGACCATGTCTGGGACATGCATCAGCATCGAGACG-AGAGCCAGTGTAAGA
* * *
7793012 CATGTCTAGGACATGCATCGGCTACGAGA
63 CATATCTAGCACATACATCGGCTACGAGA
*
7793041 TGTGTCAGTGTAAGACCATGTCTGGGACATGGCATC
1 TGTGCCAGTGTAAGACCATGTCTGGGACAT-GCATC
7793077 GGCACCAGAC
Statistics
Matches: 109, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
90 11 0.10
91 15 0.14
92 57 0.52
93 14 0.13
94 12 0.11
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (91 bp):
TGTGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCATCGAGACGAGAGCCAGTGTAAGACAT
ATCTAGCACATACATCGGCTACGAGA
Found at i:7795674 original size:29 final size:27
Alignment explanation
Indices: 7795651--7795710 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
7795641 CGCCACATAT
7795651 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGGCCTAGCCACA
* * * *
7795677 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGGCCTAGCCACA
7795704 ATATCTG
1 ATATCTG
7795711 GCAACCTCAC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGGCCTAGCCACA
Found at i:7802740 original size:27 final size:26
Alignment explanation
Indices: 7802696--7802747 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
7802686 CTCGCTGCAA
*
7802696 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
7802723 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
7802748 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:7821804 original size:40 final size:40
Alignment explanation
Indices: 7821742--7821959 Score: 350
Period size: 40 Copynumber: 5.5 Consensus size: 40
7821732 AAACCAAGTA
* * * *
7821742 CCTTCGGGATTTA-ACCGGATATAGCTACTT-GCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAGTTCGCACAAATG
*
7821781 CCTTCGGGACTTAGTCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
7821821 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
7821861 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
**
7821901 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
7821941 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
7821960 NNNNNNNNNN
Statistics
Matches: 170, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 16 0.09
40 154 0.91
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
Found at i:7829187 original size:40 final size:40
Alignment explanation
Indices: 7829125--7829409 Score: 441
Period size: 40 Copynumber: 7.2 Consensus size: 40
7829115 AAACCAAGTA
* * *
7829125 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
7829164 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
7829204 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
7829244 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
7829284 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* ** *
7829324 CCTTCGGGACTTAGCCCGGAAATAGTAGTTGGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
7829364 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
7829404 CCTTCG
1 CCTTCG
7829410 TTATCATCTG
Statistics
Matches: 230, Mismatches: 13, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
39 14 0.06
40 216 0.94
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:7835813 original size:27 final size:27
Alignment explanation
Indices: 7835783--7835841 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
7835773 AATACAATTA
*
7835783 TTCATAACATAGGGGTATATCAGTCAC
1 TTCATAACATAGGGGTATAACAGTCAC
*** *
7835810 TTCACCTCATAGGGGTATAACAGTCAT
1 TTCATAACATAGGGGTATAACAGTCAC
7835837 TTCAT
1 TTCAT
7835842 CAGCAAGGGG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (27 bp):
TTCATAACATAGGGGTATAACAGTCAC
Found at i:7835850 original size:27 final size:27
Alignment explanation
Indices: 7835790--7835852 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
7835780 TTATTCATAA
* **
7835790 CATAGGGGTATATCAGTCACTTCACCT
1 CATAGGGGTATAACAGTCACTTCACAG
*
7835817 CATAGGGGTATAACAGTCATTTCATCAG
1 CATAGGGGTATAACAGTCACTTCA-CAG
7835845 CA-AGGGGT
1 CATAGGGGT
7835853 CTAAGTGTAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 28 0.90
28 3 0.10
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (27 bp):
CATAGGGGTATAACAGTCACTTCACAG
Found at i:7839827 original size:24 final size:24
Alignment explanation
Indices: 7839795--7839842 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
7839785 AGAAAATGAA
7839795 CACATTTCATTTTACGAGCCTAGG
1 CACATTTCATTTTACGAGCCTAGG
7839819 CACATTTCATTTTACGAGCCTAGG
1 CACATTTCATTTTACGAGCCTAGG
7839843 GGATAATTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (24 bp):
CACATTTCATTTTACGAGCCTAGG
Found at i:7844228 original size:13 final size:13
Alignment explanation
Indices: 7844210--7844257 Score: 53
Period size: 13 Copynumber: 3.6 Consensus size: 13
7844200 GGGGGATAGG
7844210 ATTCTGTATATCT
1 ATTCTGTATATCT
* *
7844223 ATTCTGCATATTT
1 ATTCTGTATATCT
7844236 GATTCTGT-TATCT
1 -ATTCTGTATATCT
7844249 ATATCTGTA
1 AT-TCTGTA
7844258 CCTATAAAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
12 2 0.07
13 20 0.71
14 6 0.21
ACGTcount: A:0.23, C:0.15, G:0.10, T:0.52
Consensus pattern (13 bp):
ATTCTGTATATCT
Found at i:7856547 original size:24 final size:24
Alignment explanation
Indices: 7856520--7856631 Score: 91
Period size: 24 Copynumber: 4.6 Consensus size: 24
7856510 AGAAATTTCA
* **
7856520 GCACTATGTGTGCGAGGTTATGCG
1 GCACTATGTGTGCGAGATTACACG
* * * *
7856544 GCACTATGTGTGCAAAAACTACATG
1 GCACTATGTGTGC-GAGATTACACG
* **
7856569 GCACTATGTGTGCGAGATTATATA
1 GCACTATGTGTGCGAGATTACACG
* *
7856593 GCACTATGTGTGCGAGGA-AACGCG
1 GCACTATGTGTGCGA-GATTACACG
7856617 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
7856632 ATGAGTAAGA
Statistics
Matches: 69, Mismatches: 17, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
24 50 0.72
25 19 0.28
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (24 bp):
GCACTATGTGTGCGAGATTACACG
Found at i:7864210 original size:39 final size:39
Alignment explanation
Indices: 7864156--7864451 Score: 515
Period size: 39 Copynumber: 7.5 Consensus size: 39
7864146 TAATGGAGTA
7864156 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
7864195 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
7864234 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
7864273 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
7864312 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
7864351 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
7864390 TTATATCCGGGCTAAAGTCCC-ACAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGA-AGGCATTCGTGCTGGTG
*
7864429 TTATATCTGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
7864452 CATGCTTTGT
Statistics
Matches: 250, Mismatches: 3, Indels: 6
0.97 0.01 0.02
Matches are distributed among these distances:
39 230 0.92
40 20 0.08
ACGTcount: A:0.19, C:0.23, G:0.29, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:7866196 original size:17 final size:17
Alignment explanation
Indices: 7866174--7866219 Score: 83
Period size: 17 Copynumber: 2.7 Consensus size: 17
7866164 TGGCTGGCAA
7866174 TGTGCGAGACACGGCCG
1 TGTGCGAGACACGGCCG
*
7866191 TGTGCGAGACATGGCCG
1 TGTGCGAGACACGGCCG
7866208 TGTGCGAGACAC
1 TGTGCGAGACAC
7866220 AGCCATGTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.20, C:0.26, G:0.39, T:0.15
Consensus pattern (17 bp):
TGTGCGAGACACGGCCG
Found at i:7866217 original size:34 final size:36
Alignment explanation
Indices: 7866174--7866269 Score: 106
Period size: 40 Copynumber: 2.6 Consensus size: 36
7866164 TGGCTGGCAA
*
7866174 TGTGCGAGACACGGCCGTGTG-CGAGA-CATGGCCG
1 TGTGCGAGACACGGCCGTGTGACAAGAGCATGGCCG
*
7866208 TGTGCGAGACACAGCCATGTGTTTGACAAGAGCATGGCCG
1 TGTGCGAGACACGGCC--GTG--TGACAAGAGCATGGCCG
* *
7866248 TGTGCAAGACACGACCGTGTGA
1 TGTGCGAGACACGGCCGTGTGA
7866270 TGGTGTGCGC
Statistics
Matches: 51, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
34 15 0.29
36 6 0.12
38 5 0.10
39 4 0.08
40 21 0.41
ACGTcount: A:0.23, C:0.24, G:0.35, T:0.18
Consensus pattern (36 bp):
TGTGCGAGACACGGCCGTGTGACAAGAGCATGGCCG
Found at i:7866228 original size:17 final size:17
Alignment explanation
Indices: 7866173--7866228 Score: 76
Period size: 17 Copynumber: 3.3 Consensus size: 17
7866163 GTGGCTGGCA
7866173 ATGTGCGAGACACGGCC
1 ATGTGCGAGACACGGCC
* *
7866190 GTGTGCGAGACATGGCC
1 ATGTGCGAGACACGGCC
* *
7866207 GTGTGCGAGACACAGCC
1 ATGTGCGAGACACGGCC
7866224 ATGTG
1 ATGTG
7866229 TTTGACAAGA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 34 1.00
ACGTcount: A:0.21, C:0.25, G:0.38, T:0.16
Consensus pattern (17 bp):
ATGTGCGAGACACGGCC
Found at i:7869089 original size:26 final size:25
Alignment explanation
Indices: 7869060--7869111 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
7869050 CTCTTTTGAG
* *
7869060 TTAATAAATTCTCTTTGAGTTTTTTT
1 TTAAGAAATTCTC-TTGAGTTTCTTT
*
7869086 TTAAGAATTTCTCTTGAGTTTCTTT
1 TTAAGAAATTCTCTTGAGTTTCTTT
7869111 T
1 T
7869112 GGAAGAGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.21, C:0.10, G:0.10, T:0.60
Consensus pattern (25 bp):
TTAAGAAATTCTCTTGAGTTTCTTT
Found at i:7869117 original size:26 final size:26
Alignment explanation
Indices: 7869068--7869117 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
7869058 AGTTAATAAA
**
7869068 TTCTCTTTGAGTTTTTTTTTAAGAAT
1 TTCTCTTTGAGTTTTTTTGGAAGAAT
7869094 TTCTC-TTGAGTTTCTTTTGGAAGA
1 TTCTCTTTGAGTTT-TTTTGGAAGA
7869118 GTTTTAACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 8 0.38
26 13 0.62
ACGTcount: A:0.18, C:0.10, G:0.16, T:0.56
Consensus pattern (26 bp):
TTCTCTTTGAGTTTTTTTGGAAGAAT
Found at i:7873939 original size:46 final size:46
Alignment explanation
Indices: 7873889--7874109 Score: 225
Period size: 46 Copynumber: 4.8 Consensus size: 46
7873879 ACATCTCGTA
*
7873889 GCCGATGCATGTCCCAGACATGTCTTATACTAGCTTATGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTATGTCTCGAG
* *
7873935 GCCGATGCATGTCCCAGACATGTCTTATACTAGCTTAAGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTATGTCTCGAG
* * * * *
7873981 GCCGATGCATGTTCCAGACAAGTCTTACACTAGC--ACTCATCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTA-T-GTCTCGAG
* * ** *
7874027 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-AAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-T-ATGTCTCGAG
* *
7874075 GCTGATGCATGTCCCAGGCATGTCTTACACTAGCT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
7874110 CACAATAACC
Statistics
Matches: 146, Mismatches: 21, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
44 1 0.01
46 100 0.68
47 25 0.17
48 17 0.12
49 1 0.01
51 1 0.01
52 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTATGTCTCGAG
Found at i:7873985 original size:92 final size:95
Alignment explanation
Indices: 7873889--7874109 Score: 240
Period size: 94 Copynumber: 2.4 Consensus size: 95
7873879 ACATCTCGTA
* * * *
7873889 GCCGATGCATGTCCCAGACATGTCTTATACTAGCTTA-T-GTCTCGAGGCCGATG-CATGTCCCA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-TACTCATCTCAAGACCGATGCCATGTCCCA
* *
7873951 GACAT-GTCTTATACTAGCT-TAAGT-CTCGAG
65 GACATGGTCTTACACTAGCTCTAA-TAAT-GAG
* * *
7873981 GCCGATGCATGTTCCAGACAAGTCTTACACTAGC-ACTCATCTCAATACCGATGCCATGTCCCAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTACTCATCTCAAGACCGATGCCATGTCCCAG
* * *
7874045 ACATGGTCTTACACTGGCTCTCATAATGTG
66 ACATGGTCTTACACTAGCTCTAATAATGAG
* *
7874075 GCTGATGCATGTCCCAGGCATGTCTTACACTAGCT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
7874110 CACAATAACC
Statistics
Matches: 106, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
90 1 0.01
91 1 0.01
92 42 0.40
93 14 0.13
94 45 0.42
95 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (95 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTACTCATCTCAAGACCGATGCCATGTCCCAG
ACATGGTCTTACACTAGCTCTAATAATGAG
Found at i:7885368 original size:68 final size:66
Alignment explanation
Indices: 7885296--7885445 Score: 169
Period size: 64 Copynumber: 2.2 Consensus size: 66
7885286 CATCATGTGT
* * * *
7885296 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTA-A-ACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCA
7885359 TGTAG
62 TGTAG
** * *
7885364 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGT
7885429 AG
65 AG
7885431 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
7885446 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 28 0.40
65 3 0.04
66 3 0.04
67 23 0.33
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTA
G
Found at i:7885401 original size:64 final size:64
Alignment explanation
Indices: 7885320--7885503 Score: 203
Period size: 64 Copynumber: 2.8 Consensus size: 64
7885310 AGACATTATG
* * * *
7885320 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTAAACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTAAACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
7885384 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTA--A-ACCATGTAGACAAGAGAGCTACGAGAT
7885449 AA
63 AA
* **
7885451 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTAAGTGTAAACCATGTAG-ACAAGAGAGC
7885504 CGAACTATAT
Statistics
Matches: 100, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
62 1 0.01
63 17 0.17
64 28 0.28
66 24 0.24
67 28 0.28
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTAAACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:7895466 original size:84 final size:84
Alignment explanation
Indices: 7895367--7895536 Score: 322
Period size: 84 Copynumber: 2.0 Consensus size: 84
7895357 ACTTACCTCA
* *
7895367 GATTAAAAAATGTGGCGACTAGTCAATTTGCTTGACTTTCCCCCGGTCTAGGTTCGGATTTGGTA
1 GATTAAAAAATGTGGCGACTAGTCAATTTGCTTGACTTTCCCCCGGTCTAGGTTCAGATTAGGTA
7895432 TATCTTGATTTACAATAAC
66 TATCTTGATTTACAATAAC
7895451 GATTAAAAAATGTGGCGACTAGTCAATTTGCTTGACTTTCCCCCGGTCTAGGTTCAGATTAGGTA
1 GATTAAAAAATGTGGCGACTAGTCAATTTGCTTGACTTTCCCCCGGTCTAGGTTCAGATTAGGTA
7895516 TATCTTGATTTACAATAAC
66 TATCTTGATTTACAATAAC
7895535 GA
1 GA
7895537 AATGCACTTA
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 84 1.00
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.35
Consensus pattern (84 bp):
GATTAAAAAATGTGGCGACTAGTCAATTTGCTTGACTTTCCCCCGGTCTAGGTTCAGATTAGGTA
TATCTTGATTTACAATAAC
Found at i:7896574 original size:39 final size:39
Alignment explanation
Indices: 7896515--7896592 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
7896505 GAAAAAAGAT
7896515 TTACCTAAACTTTCTTGTGCGCCAAAACTATCTCAAGGA
1 TTACCTAAACTTTCTTGTGCGCCAAAACTATCTCAAGGA
*
7896554 TTACTTAAACTTTCTTGTGCGCCAAAACTATCTCAAGGA
1 TTACCTAAACTTTCTTGTGCGCCAAAACTATCTCAAGGA
7896593 CCAAAGATAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.32
Consensus pattern (39 bp):
TTACCTAAACTTTCTTGTGCGCCAAAACTATCTCAAGGA
Found at i:7899453 original size:11 final size:11
Alignment explanation
Indices: 7899437--7899463 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
7899427 CCTAAATGAC
7899437 AAATTCATCAA
1 AAATTCATCAA
7899448 AAATTCATCAA
1 AAATTCATCAA
7899459 AAATT
1 AAATT
7899464 TCTTTACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.30
Consensus pattern (11 bp):
AAATTCATCAA
Found at i:7921508 original size:19 final size:19
Alignment explanation
Indices: 7921484--7921529 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
7921474 ACAACTTTAG
7921484 TTAAGATAGGTGCACAAAA
1 TTAAGATAGGTGCACAAAA
*
7921503 TTAAGATAGGTGCATAAAA
1 TTAAGATAGGTGCACAAAA
*
7921522 TTAGGATA
1 TTAAGATA
7921530 ACTTTAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.46, C:0.07, G:0.22, T:0.26
Consensus pattern (19 bp):
TTAAGATAGGTGCACAAAA
Found at i:7941276 original size:27 final size:27
Alignment explanation
Indices: 7941245--7941422 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
7941235 TAAATTGTAC
7941245 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
7941272 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
7941298 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
7941326 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
7941354 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
7941381 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
7941408 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
7941423 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:7941359 original size:82 final size:81
Alignment explanation
Indices: 7941246--7941401 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
7941236 AAATTGTACA
* *
7941246 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
7941310 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
7941327 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
7941392 TGCGAGTTGA
65 TGCGAATTGA
7941402 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:7941413 original size:82 final size:81
Alignment explanation
Indices: 7941242--7941422 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
7941232 GATTAAATTG
* *
7941242 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
7941307 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
7941323 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
7941387 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
7941405 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
7941423 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:7949371 original size:27 final size:26
Alignment explanation
Indices: 7949340--7949517 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
7949330 TAAATTGTAC
7949340 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
7949367 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
7949393 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
7949421 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
7949449 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
7949476 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
7949503 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
7949518 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:7949456 original size:82 final size:81
Alignment explanation
Indices: 7949341--7949496 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
7949331 AAATTGTACA
* * *
7949341 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
7949405 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
7949422 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
7949487 TGCGAGTTGA
65 TGCGAATTGA
7949497 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:7949508 original size:82 final size:81
Alignment explanation
Indices: 7949337--7949517 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
7949327 GATTAAATTG
* * *
7949337 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
7949402 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
7949418 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
7949482 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
7949500 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
7949518 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:7950595 original size:94 final size:94
Alignment explanation
Indices: 7950434--7950621 Score: 358
Period size: 94 Copynumber: 2.0 Consensus size: 94
7950424 TCCCTGCTCC
*
7950434 GACTTTGGAAATTCATTATAAATTAACCAGAGATAATTAGGGGTCGTACCATATATGTGCAGATT
1 GACTTTGGAAATTCATTATAAATTAACCAGAGATAATTAGGGGTCGTACCATATATGTACAGATT
7950499 CCTCTCTGAGTCTAGTTTCCATAGAAACA
66 CCTCTCTGAGTCTAGTTTCCATAGAAACA
7950528 GACTTTGGAAATTCATTATAAATTAACCAGAGATAATTAGGGGTCGTACCATATATGTACAGATT
1 GACTTTGGAAATTCATTATAAATTAACCAGAGATAATTAGGGGTCGTACCATATATGTACAGATT
*
7950593 CCTCTCTGAGTCTAGTTTTCATAGAAACA
66 CCTCTCTGAGTCTAGTTTCCATAGAAACA
7950622 AACGGAAACA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 92 1.00
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (94 bp):
GACTTTGGAAATTCATTATAAATTAACCAGAGATAATTAGGGGTCGTACCATATATGTACAGATT
CCTCTCTGAGTCTAGTTTCCATAGAAACA
Found at i:7976611 original size:31 final size:31
Alignment explanation
Indices: 7976576--7976639 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
7976566 CCTTTTCATA
*
7976576 TTTCATATTTCGTAACACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
** *
7976607 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
7976638 TT
1 TT
7976640 ACTGTAAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Found at i:7976904 original size:25 final size:25
Alignment explanation
Indices: 7976848--7976955 Score: 175
Period size: 25 Copynumber: 4.4 Consensus size: 25
7976838 CTGGAGGCCT
7976848 AGCCTCTTTTAAT-AACTGGGGC-AA
1 AGCC-CTTTTAATAAACTGGGGCAAA
*
7976872 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTAATAAACTGGGGCAAA
*
7976897 AGCCCTTTTAATAAACTAGGGCAAA
1 AGCCCTTTTAATAAACTGGGGCAAA
7976922 AGCCCTTTTAATAAACTGGGGCAAA
1 AGCCCTTTTAATAAACTGGGGCAAA
7976947 AGCCCTTTT
1 AGCCCTTTT
7976956 TGCACTTCCT
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
23 7 0.09
24 13 0.17
25 58 0.74
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.27
Consensus pattern (25 bp):
AGCCCTTTTAATAAACTGGGGCAAA
Found at i:7977026 original size:20 final size:20
Alignment explanation
Indices: 7977003--7977049 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
7976993 TTATGAATAC
7977003 ATCATGTGCATATCATA-CA
1 ATCATGTGCATATCATATCA
7977022 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
7977043 ATCATGT
1 ATCATGT
7977050 ATATCAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:7985502 original size:178 final size:176
Alignment explanation
Indices: 7985203--7985558 Score: 617
Period size: 178 Copynumber: 2.0 Consensus size: 176
7985193 TTTAGTGACT
7985203 ACTGCTCAGGAAAAACAGCTTGCGCTGAATTTGAGATTGTGTTGTAAACCTTGATAAACTTGTTC
1 ACTGCTCAGGAAAAACAGCTTGCGCTGAATTTGAGATTGTGTTGTAAACCTTGATAAACTTGTTC
7985268 TAGTTGCTCATAAGCTATCGATTAAACCCATACGTGAATTCTAAATTGTGATATTGGAAAATGAT
66 TAGTTGCTCATAAGCTATCGATTAAACCCATACGTGAATTCTAAATTGTGATATTGGAAAATGAT
**
7985333 A-GATGTAGATTCA-GCCAAGAAAGTGTATATATGTGATAAGGCCTAATG
131 ACGATGT-GATGAATG---AGAAAGTGTATATATGTGATAAGGCCTAATG
7985381 ACTGCTCAGGAAAAACAGCTTGCGCTGAATTTGAGATTGTGTTGTAAACCTTGATAAACTTGTTC
1 ACTGCTCAGGAAAAACAGCTTGCGCTGAATTTGAGATTGTGTTGTAAACCTTGATAAACTTGTTC
7985446 TAGTTGCTCATAAGCTATCGATTAAACCCATACGTGAATTCTAAATTGTGATATTGGAAAATGAT
66 TAGTTGCTCATAAGCTATCGATTAAACCCATACGTGAATTCTAAATTGTGATATTGGAAAATGAT
*
7985511 AGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
131 A--CGATGTGATGAATGAGAAAGTGTATATATGTGATAAGGCCTAATG
7985559 GCCGATGTGA
Statistics
Matches: 171, Mismatches: 3, Indels: 8
0.94 0.02 0.04
Matches are distributed among these distances:
178 161 0.94
180 4 0.02
181 6 0.04
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32
Consensus pattern (176 bp):
ACTGCTCAGGAAAAACAGCTTGCGCTGAATTTGAGATTGTGTTGTAAACCTTGATAAACTTGTTC
TAGTTGCTCATAAGCTATCGATTAAACCCATACGTGAATTCTAAATTGTGATATTGGAAAATGAT
ACGATGTGATGAATGAGAAAGTGTATATATGTGATAAGGCCTAATG
Found at i:7985565 original size:47 final size:47
Alignment explanation
Indices: 7985512--7985644 Score: 185
Period size: 47 Copynumber: 2.8 Consensus size: 47
7985502 GAAAATGATA
*
7985512 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
* * *
7985559 GCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
* * * * *
7985606 GCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
7985645 TCCCAAAGGG
Statistics
Matches: 75, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 75 1.00
ACGTcount: A:0.32, C:0.10, G:0.32, T:0.26
Consensus pattern (47 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
Found at i:7985818 original size:37 final size:37
Alignment explanation
Indices: 7985762--7985840 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
7985752 CCGAGCTCTA
* *
7985762 AAGACCCAATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCAATAACTACGTGTGGAG-ATTATGTCCGGGT
* *
7985799 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCAATAACTACGTGTGGAGATTATGTCCGGGT
7985836 AAGAC
1 AAGAC
7985841 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (37 bp):
AAGACCCAATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:7987780 original size:29 final size:29
Alignment explanation
Indices: 7987745--7987818 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
7987735 GTTGTGAGAT
* *
7987745 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
7987774 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
7987803 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
7987819 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:7989409 original size:36 final size:36
Alignment explanation
Indices: 7989369--7989439 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
7989359 CCCTAATTTG
*
7989369 ACCCTAGTCGGAAAGCGGTTTTGGGACCGCTAAACC
1 ACCCTAGTCGGAAAGCGGTTTCGGGACCGCTAAACC
7989405 ACCCTAGTCGGAAAGCGGTTTCGGGACCGCTAAAC
1 ACCCTAGTCGGAAAGCGGTTTCGGGACCGCTAAAC
7989440 TGAGTAACCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.18
Consensus pattern (36 bp):
ACCCTAGTCGGAAAGCGGTTTCGGGACCGCTAAACC
Found at i:7992449 original size:27 final size:26
Alignment explanation
Indices: 7992418--7992595 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
7992408 TAAATTGTAC
7992418 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
7992445 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
7992471 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
7992499 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
7992527 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
7992554 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
7992581 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
7992596 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:7992534 original size:82 final size:81
Alignment explanation
Indices: 7992419--7992574 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
7992409 AAATTGTACA
* * *
7992419 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
7992483 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
7992500 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
7992565 TGCGAGTTGA
65 TGCGAATTGA
7992575 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:7992586 original size:82 final size:81
Alignment explanation
Indices: 7992415--7992595 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
7992405 GATTAAATTG
* * *
7992415 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
7992480 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
7992496 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
7992560 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
7992578 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
7992596 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:7996725 original size:39 final size:39
Alignment explanation
Indices: 7996671--7996927 Score: 444
Period size: 39 Copynumber: 6.5 Consensus size: 39
7996661 TAATGGAGAA
*
7996671 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
7996710 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
7996749 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
7996788 TTATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
7996827 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
7996866 TTATATCCGGGCTAAGCCCCGAAAGG-ATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCG-AAGGCATTCGTGCTGGTG
7996905 TTATATCCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
7996928 CATGCTTTGT
Statistics
Matches: 209, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
39 197 0.94
40 5 0.02
41 7 0.03
ACGTcount: A:0.19, C:0.23, G:0.30, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:8000574 original size:21 final size:21
Alignment explanation
Indices: 8000549--8000589 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
8000539 TATTGATTTA
8000549 GTAAATTAGTTGATGAAATTC
1 GTAAATTAGTTGATGAAATTC
*
8000570 GTAAATTAGTTTATGAAATT
1 GTAAATTAGTTGATGAAATT
8000590 AGAATATGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.39, C:0.02, G:0.17, T:0.41
Consensus pattern (21 bp):
GTAAATTAGTTGATGAAATTC
Found at i:8001298 original size:39 final size:39
Alignment explanation
Indices: 8001236--8001312 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
8001226 CATGATATTT
**
8001236 GGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGCC
1 GGAAACATATCCAAACTTGAGGTCCGCAGGCTACGTGCC
*
8001275 GGAAACATATCCAAACTTTAGGTCCGCAGGCTACGTGC
1 GGAAACATATCCAAACTTGAGGTCCGCAGGCTACGTGC
8001313 TAGAATATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.26, C:0.27, G:0.27, T:0.19
Consensus pattern (39 bp):
GGAAACATATCCAAACTTGAGGTCCGCAGGCTACGTGCC
Found at i:8008693 original size:44 final size:44
Alignment explanation
Indices: 8008585--8008768 Score: 257
Period size: 44 Copynumber: 4.2 Consensus size: 44
8008575 TGTGTTATCA
* * *
8008585 TGTAATACCACGTCTGGGACATTGGCATTGACTTATGATTTATCA
1 TGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTA-CG
*
8008630 TGTAATACCACGTCTGGGACATTGGCATCGACTTATGATTTACG
1 TGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTACG
* *
8008674 TGTAAGACCACATCTGGGACGTTGGCATCGACTTATGATTTACG
1 TGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTACG
* *
8008718 TGTAAGACCACGTCTGGGACGTTGGCATCGTGC-T-TGATTT-CG
1 TGTAAGACCACGTCTGGGACATTGGCATCG-ACTTATGATTTACG
8008760 TGTAAGACC
1 TGTAAGACC
8008769 CTGTTTGGGG
Statistics
Matches: 131, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
42 11 0.08
43 6 0.05
44 72 0.55
45 42 0.32
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTACG
Found at i:8011678 original size:12 final size:12
Alignment explanation
Indices: 8011661--8011687 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
8011651 AAAAGTAAAG
8011661 AATGAATAAAAC
1 AATGAATAAAAC
8011673 AATGAATAAAAC
1 AATGAATAAAAC
8011685 AAT
1 AAT
8011688 TTCTTTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.67, C:0.07, G:0.07, T:0.19
Consensus pattern (12 bp):
AATGAATAAAAC
Found at i:8017336 original size:37 final size:37
Alignment explanation
Indices: 8017285--8017382 Score: 96
Period size: 37 Copynumber: 2.6 Consensus size: 37
8017275 TCAGTTAGAC
8017285 TAGCTCTT-CGGAGCAATTGGCGTGTTATCGGGTGGAT
1 TAGCTCTTAC-GAGCAATTGGCGTGTTATCGGGTGGAT
* * *
8017322 TAGCTCTTATGAGCATCAATT---ATGTTATTGGGTGGAT
1 TAGCTCTTACGAG---CAATTGGCGTGTTATCGGGTGGAT
*
8017359 TAGCTCTTACGAGCGATTGGCGTG
1 TAGCTCTTACGAGCAATTGGCGTG
8017383 CTTCAGTTGG
Statistics
Matches: 48, Mismatches: 6, Indels: 14
0.71 0.09 0.21
Matches are distributed among these distances:
34 4 0.08
37 39 0.81
40 5 0.10
ACGTcount: A:0.19, C:0.15, G:0.31, T:0.35
Consensus pattern (37 bp):
TAGCTCTTACGAGCAATTGGCGTGTTATCGGGTGGAT
Found at i:8019979 original size:13 final size:13
Alignment explanation
Indices: 8019961--8019985 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8019951 AAGTAAGTGA
8019961 TCTTGATGATTTC
1 TCTTGATGATTTC
8019974 TCTTGATGATTT
1 TCTTGATGATTT
8019986 TTGTACTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.12, G:0.16, T:0.56
Consensus pattern (13 bp):
TCTTGATGATTTC
Found at i:8020801 original size:46 final size:46
Alignment explanation
Indices: 8020689--8020812 Score: 151
Period size: 46 Copynumber: 2.7 Consensus size: 46
8020679 TATTTATGTA
* *
8020689 CCAGTGTAAGGCCATGTCTGGGACATGGCATTGGCATTAAGAAGAGAG
1 CCAGTGTAA-GACATGTCTGGGACAT-GCATCGGCATTAAGAAGAGAG
* * * * *
8020737 CTAGTGTAAGACACGTCTGGGACATGCATCGGCCTTGAGATGTA-AG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCATTAAGAAG-AGAG
8020783 CCAGTGTAAGACATGTCTGGGACATGCATC
1 CCAGTGTAAGACATGTCTGGGACATGCATC
8020813 AGCTACGAGA
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 43 0.65
47 15 0.23
48 8 0.12
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (46 bp):
CCAGTGTAAGACATGTCTGGGACATGCATCGGCATTAAGAAGAGAG
Found at i:8027772 original size:55 final size:55
Alignment explanation
Indices: 8027685--8027821 Score: 143
Period size: 55 Copynumber: 2.5 Consensus size: 55
8027675 TGCGACATAG
* * * * * *
8027685 CCGTGGGC-GAACCTGCCAAAATAGCACGGGCGTGCGACACGTCCGTGCCTTGAAC
1 CCGT-GGCTGAACCTGTCAAATTAACACAGGCGTGCGACACGCCCGTGCCTAGAAC
* * *
8027740 CCGTGGCTGAACCTGTCAAATTAACACAGGCGTGCGACACGCCCTTGTCTAGCAC
1 CCGTGGCTGAACCTGTCAAATTAACACAGGCGTGCGACACGCCCGTGCCTAGAAC
* *
8027795 CTGTGG-TCGAACCTGTTAAATTAACAC
1 CCGTGGCT-GAACCTGTCAAATTAACAC
8027822 CGGTGTGGGC
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
54 4 0.06
55 65 0.94
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.20
Consensus pattern (55 bp):
CCGTGGCTGAACCTGTCAAATTAACACAGGCGTGCGACACGCCCGTGCCTAGAAC
Found at i:8034417 original size:17 final size:17
Alignment explanation
Indices: 8034389--8034430 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
8034379 TAATAGATTA
*
8034389 TATAAT-TAAAATATGT
1 TATAATATAAAATAAGT
8034405 TATAATATAAAATAAGT
1 TATAATATAAAATAAGT
8034422 TATAATATA
1 TATAATATA
8034431 TTAAGTGGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 6 0.25
17 18 0.75
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (17 bp):
TATAATATAAAATAAGT
Found at i:8035892 original size:69 final size:70
Alignment explanation
Indices: 8035761--8035892 Score: 221
Period size: 69 Copynumber: 1.9 Consensus size: 70
8035751 AGTTTATTAC
* * * *
8035761 TAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTAC
1 TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTAC
8035826 TTAGT
66 TTAGT
8035831 TAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
8035893 GTTATGTGCT
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
69 36 0.62
70 22 0.38
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (70 bp):
TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTAC
TTAGT
Found at i:8036151 original size:39 final size:39
Alignment explanation
Indices: 8036039--8036190 Score: 196
Period size: 39 Copynumber: 3.9 Consensus size: 39
8036029 ATTTGATGTA
* *
8036039 TATCCGGACTTAAGGTCCGCAGGCTTCCTGCTGGAATTG
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* *
8036078 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTT-AAGATCCGCAGGCTTCGTGCTGGAATTG
* * * *
8036118 TATCCAGACTTAAGATCTGCAGGCTTCGTGCTGGTATTA
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* * *
8036157 TATCCGGACTTAAGGTCCGTAGGCTTCGTACTGG
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGG
8036191 TACTATATCT
Statistics
Matches: 97, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 63 0.65
40 34 0.35
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.29
Consensus pattern (39 bp):
TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
Found at i:8036191 original size:39 final size:39
Alignment explanation
Indices: 8036037--8036222 Score: 192
Period size: 39 Copynumber: 4.7 Consensus size: 39
8036027 ATATTTGATG
*
8036037 TATATCCGGACTTAAGGTCCGCAGGCTTCCTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAAT
* * **
8036076 TGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAAT
1 TATATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAAT
* * * * *
8036116 TGTATCCAGACTTAAGATCTGCAGGCTTCGTGCTGGTAT
1 TATATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAAT
* * * *
8036155 TATATCCGGACTTAAGGTCCGTAGGCTTCGTACTGGTAC
1 TATATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAAT
* * * *
8036194 TATATCTGGGCTTAAAGTCCCGTAGGCTT
1 TATATCCGGACTTAAGGT-CCGCAGGCTT
8036223 TGTGTTGGTG
Statistics
Matches: 125, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 81 0.65
40 44 0.35
ACGTcount: A:0.20, C:0.23, G:0.26, T:0.30
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAAT
Found at i:8045779 original size:25 final size:25
Alignment explanation
Indices: 8045743--8045790 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
8045733 TTTTGTTCTT
* *
8045743 CTTGACCGAAAAATCAAGGGAAGTC
1 CTTGACCAAAAAATCAAAGGAAGTC
8045768 CTTGACCAAAAAATCAAAGGAAG
1 CTTGACCAAAAAATCAAAGGAAG
8045791 AAGAAAGGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.46, C:0.19, G:0.21, T:0.15
Consensus pattern (25 bp):
CTTGACCAAAAAATCAAAGGAAGTC
Found at i:8047691 original size:47 final size:47
Alignment explanation
Indices: 8047622--8047726 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
8047612 NNNNNNNNNN
*
8047622 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
8047669 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
8047716 AATGTGATAAG
1 TATGTGATAAG
8047727 TCCCGAAGGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:8049780 original size:40 final size:40
Alignment explanation
Indices: 8049728--8049963 Score: 373
Period size: 40 Copynumber: 5.9 Consensus size: 40
8049718 CTCGACGATG
* * *
8049728 ATCCGGGAAAAATCCCGAAGGGCATTCATGCCGATGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* *
8049768 ATCCGGTCAAAATCCCAAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
*
8049808 ATCCGGGCAAAATCCTGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
*
8049848 ATCCGGGCAAAATCCCGAAGGGCATTTGTGCCGGTGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* *
8049888 ATCCGGGCAAAATCCCGAAGGGCATTCGTGTCGATGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* *
8049928 ATCCGGGCTAAGTCCCGAAGGGCATTCGTGCCGGTG
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTG
8049964 ATGTGTATTC
Statistics
Matches: 179, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 179 1.00
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
Found at i:8057287 original size:47 final size:47
Alignment explanation
Indices: 8057236--8057340 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
8057226 TAGTATTAAT
*
8057236 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
8057283 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
8057330 AATGTGATAAG
1 TATGTGATAAG
8057341 TCCCGAAGGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:8063642 original size:16 final size:16
Alignment explanation
Indices: 8063621--8063652 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8063611 GCAAATCCAG
8063621 AAATGCGGAAAAGCCA
1 AAATGCGGAAAAGCCA
*
8063637 AAATGCTGAAAAGCCA
1 AAATGCGGAAAAGCCA
8063653 GAAGTTTGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.19, G:0.22, T:0.09
Consensus pattern (16 bp):
AAATGCGGAAAAGCCA
Found at i:8063964 original size:29 final size:27
Alignment explanation
Indices: 8063870--8063987 Score: 119
Period size: 28 Copynumber: 4.1 Consensus size: 27
8063860 GCATGACTAC
* *
8063870 GAATGTGATTGGGGCTGATGGGCCATAT
1 GAATGTGATT-GGGCTAATGGGTCATAT
*
8063898 GAATGTGATTAGGGCCAATGGGTCATAT
1 GAATGTGATT-GGGCTAATGGGTCATAT
*
8063926 GAAAGTGATTTGGGACTAATGGGTCATAT
1 GAATGTGA-TTGGG-CTAATGGGTCATAT
* * *
8063955 GAATGAGATTGGGCCTAAAGGGTCCAAAT
1 GAATGTGATTGGG-CTAATGGGT-CATAT
8063984 GAAT
1 GAAT
8063988 AAGTATGGAT
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
28 47 0.62
29 29 0.38
ACGTcount: A:0.30, C:0.10, G:0.33, T:0.27
Consensus pattern (27 bp):
GAATGTGATTGGGCTAATGGGTCATAT
Found at i:8067175 original size:20 final size:20
Alignment explanation
Indices: 8067109--8067175 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
8067099 ATTCTGATAA
* *
8067109 ACATGGTATGTATGATAAGC
1 ACATGATATGTATGATATGC
*
8067129 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
8067149 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
8067169 ACATGAT
1 ACATGAT
8067176 GTACTCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:8067276 original size:23 final size:24
Alignment explanation
Indices: 8067225--8067319 Score: 113
Period size: 24 Copynumber: 4.0 Consensus size: 24
8067215 GAGGAAGTGC
*
8067225 AAAATGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCTAGTTATT
* *
8067249 GAAAGGGCTTATGCCCCA-TTATT
1 AAAAGGGCTTATGCCCTAGTTATT
*
8067272 AAAAGGGCTTTTGCCCTAGTTATT
1 AAAAGGGCTTATGCCCTAGTTATT
*
8067296 AAAAGAGGC-TAGGCCTCTAGTTAT
1 AAAAG-GGCTTATGCC-CTAGTTAT
8067320 ATGATAAAGC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
23 20 0.33
24 29 0.48
25 11 0.18
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCTAGTTATT
Found at i:8068321 original size:40 final size:40
Alignment explanation
Indices: 8068276--8068358 Score: 157
Period size: 40 Copynumber: 2.1 Consensus size: 40
8068266 TTCTTTAAAA
*
8068276 TACACCTCGCTTTGAAAGCAATAAATACAAGCTGGGATTT
1 TACACCTCGCTTTGAAAGCAACAAATACAAGCTGGGATTT
8068316 TACACCTCGCTTTGAAAGCAACAAATACAAGCTGGGATTT
1 TACACCTCGCTTTGAAAGCAACAAATACAAGCTGGGATTT
8068356 TAC
1 TAC
8068359 TCAAGGTTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.27
Consensus pattern (40 bp):
TACACCTCGCTTTGAAAGCAACAAATACAAGCTGGGATTT
Found at i:8072318 original size:16 final size:16
Alignment explanation
Indices: 8072299--8072357 Score: 75
Period size: 16 Copynumber: 3.7 Consensus size: 16
8072289 TGAAACGCCT
*
8072299 AAAAGTCGAAATGTCG
1 AAAAGTCAAAATGTCG
8072315 AAAAGTCAAAATG-CAG
1 AAAAGTCAAAATGTC-G
*
8072331 AAAAGCCAAAATGTCG
1 AAAAGTCAAAATGTCG
*
8072347 AAAAGCCAAAA
1 AAAAGTCAAAA
8072358 GTTTAGCTAC
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
15 1 0.03
16 37 0.95
17 1 0.03
ACGTcount: A:0.54, C:0.15, G:0.19, T:0.12
Consensus pattern (16 bp):
AAAAGTCAAAATGTCG
Found at i:8072651 original size:28 final size:29
Alignment explanation
Indices: 8072572--8072656 Score: 127
Period size: 29 Copynumber: 3.0 Consensus size: 29
8072562 GCATGAATAT
*
8072572 GAATGTGATTTGGGCCTAATGGGCCATCC
1 GAATGTGATTTGGGCCTAATGGGCCATAC
8072601 GAATGTGATTTGGGCCTAATGGGCCATAC
1 GAATGTGATTTGGGCCTAATGGGCCATAC
* * *
8072630 GAATGAGA-TTGGCCCTAGTGGGCCATA
1 GAATGTGATTTGGGCCTAATGGGCCATA
8072657 TGCATGTATG
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 17 0.33
29 35 0.67
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.26
Consensus pattern (29 bp):
GAATGTGATTTGGGCCTAATGGGCCATAC
Found at i:8074372 original size:16 final size:16
Alignment explanation
Indices: 8074351--8074383 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
8074341 TCAGCAAATC
*
8074351 CCAAAATGTCGAAAAG
1 CCAAAATGCCGAAAAG
8074367 CCAAAATGCCGAAAAG
1 CCAAAATGCCGAAAAG
8074383 C
1 C
8074384 TAGAAGTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.24, G:0.18, T:0.09
Consensus pattern (16 bp):
CCAAAATGCCGAAAAG
Found at i:8074632 original size:28 final size:28
Alignment explanation
Indices: 8074600--8074700 Score: 130
Period size: 28 Copynumber: 3.6 Consensus size: 28
8074590 GATTGCATAC
8074600 TATGAATGTGATTGGGGCTGATGGGCCA
1 TATGAATGTGATTGGGGCTGATGGGCCA
* *
8074628 TATGAATGTGATTGGGGCCGATGGGTCA
1 TATGAATGTGATTGGGGCTGATGGGCCA
* * * *
8074656 TATGAAAGTGATTTGAGCCTAATGGGCCA
1 TATGAATGTGA-TTGGGGCTGATGGGCCA
*
8074685 TATGAATGAGATTGGG
1 TATGAATGTGATTGGG
8074701 CCTATAGGGG
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
28 40 0.66
29 21 0.34
ACGTcount: A:0.26, C:0.10, G:0.36, T:0.29
Consensus pattern (28 bp):
TATGAATGTGATTGGGGCTGATGGGCCA
Found at i:8074711 original size:29 final size:27
Alignment explanation
Indices: 8074600--8074720 Score: 125
Period size: 28 Copynumber: 4.3 Consensus size: 27
8074590 GATTGCATAC
*
8074600 TATGAATGTGATTGGGGCTGATGGGCCA
1 TATGAATGTGATTGGGCCT-ATGGGCCA
* *
8074628 TATGAATGTGATTGGGGCCGATGGGTCA
1 TATGAATGTGATT-GGGCCTATGGGCCA
* *
8074656 TATGAAAGTGATTTGAGCCTAATGGGCCA
1 TATGAATGTGA-TTGGGCCT-ATGGGCCA
*
8074685 TATGAATGAGATTGGGCCTATAGGGGCCA
1 TATGAATGTGATTGGGCCTAT--GGGCCA
*
8074714 AATGAAT
1 TATGAAT
8074721 AAGTATGGAC
Statistics
Matches: 77, Mismatches: 11, Indels: 9
0.79 0.11 0.09
Matches are distributed among these distances:
27 2 0.03
28 41 0.53
29 34 0.44
ACGTcount: A:0.27, C:0.12, G:0.34, T:0.27
Consensus pattern (27 bp):
TATGAATGTGATTGGGCCTATGGGCCA
Found at i:8075953 original size:40 final size:40
Alignment explanation
Indices: 8075893--8075973 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
8075883 ATTTAAAATG
8075893 CACCTCGCTTTGAAAGCAACAAATACAAGCTAGGATTTTA
1 CACCTCGCTTTGAAAGCAACAAATACAAGCTAGGATTTTA
*
8075933 CACCTCGCTTTGAAATCAACAAATACAAGCTAGGATTTTA
1 CACCTCGCTTTGAAAGCAACAAATACAAGCTAGGATTTTA
8075973 C
1 C
8075974 TCAAGGATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.26
Consensus pattern (40 bp):
CACCTCGCTTTGAAAGCAACAAATACAAGCTAGGATTTTA
Found at i:8090597 original size:30 final size:31
Alignment explanation
Indices: 8090527--8090609 Score: 134
Period size: 30 Copynumber: 2.7 Consensus size: 31
8090517 TCAATCTCAA
8090527 CATAT-ACTGGGCCGAAGCCTTTGCATTATT
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
* *
8090557 CATGTCACTGGGCCGAAGCCTTTTCATTA-T
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
8090587 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
8090610 ACTGTAAACG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
30 27 0.55
31 22 0.45
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTGCATTATT
Found at i:8090858 original size:25 final size:25
Alignment explanation
Indices: 8090830--8090898 Score: 111
Period size: 25 Copynumber: 2.8 Consensus size: 25
8090820 CTCTTTTAAT
*
8090830 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
8090855 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
8090880 AACTGGGGCATAGCCCTTT
1 AACTGGGGCAAAGCCCTTT
8090899 CATCCATATA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:8094734 original size:21 final size:20
Alignment explanation
Indices: 8094695--8094734 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
8094685 GGTGCCTCAG
*
8094695 TCAAAACCTTTTTCAGCTTC
1 TCAAAACCTTTTGCAGCTTC
*
8094715 TCAAAAGCCTTTTGCTGCTT
1 TCAAAA-CCTTTTGCAGCTT
8094735 ATTTGTCCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.23, C:0.28, G:0.10, T:0.40
Consensus pattern (20 bp):
TCAAAACCTTTTGCAGCTTC
Found at i:8098469 original size:30 final size:31
Alignment explanation
Indices: 8098399--8098483 Score: 120
Period size: 30 Copynumber: 2.8 Consensus size: 31
8098389 TCAATCTCAA
*
8098399 CATAT-ACTGGCCCGAAGCCTTTGCATTATT
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
* *
8098429 CATGTCACTGGGCCGAAGCCTTTTCATTA-T
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
*
8098459 CATATCACTGGGCTGAAGCCTTTGC
1 CATATCACTGGGCCGAAGCCTTTGC
8098484 TATAAACGGT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
30 27 0.56
31 21 0.44
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.32
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTGCATTATT
Found at i:8102594 original size:21 final size:20
Alignment explanation
Indices: 8102555--8102594 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
8102545 GGTGCCTCAG
*
8102555 TCAAAACCTTTTTCAGCTTC
1 TCAAAACCTTTTGCAGCTTC
*
8102575 TCAAAAGCCTTTTGCTGCTT
1 TCAAAA-CCTTTTGCAGCTT
8102595 ATTTGTCCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.23, C:0.28, G:0.10, T:0.40
Consensus pattern (20 bp):
TCAAAACCTTTTGCAGCTTC
Found at i:8106346 original size:30 final size:31
Alignment explanation
Indices: 8106276--8106360 Score: 120
Period size: 30 Copynumber: 2.8 Consensus size: 31
8106266 TCAATCTCAA
*
8106276 CATAT-ACTGGCCCGAAGCCTTTGCATTATT
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
* *
8106306 CATGTCACTGGGCCGAAGCCTTTTCATTA-T
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
*
8106336 CATATCACTGGGCTGAAGCCTTTGC
1 CATATCACTGGGCCGAAGCCTTTGC
8106361 TATAAACGGT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
30 27 0.56
31 21 0.44
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.32
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTGCATTATT
Found at i:8107813 original size:7 final size:7
Alignment explanation
Indices: 8107801--8107890 Score: 117
Period size: 7 Copynumber: 12.4 Consensus size: 7
8107791 CCTCTCAAAT
8107801 CCCTAAA
1 CCCTAAA
8107808 CCCTAAA
1 CCCTAAA
8107815 CCCTAAA
1 CCCTAAA
8107822 CCCTAAAA
1 CCCT-AAA
*
8107830 CTCTAAA
1 CCCTAAA
*
8107837 CCTTAAA
1 CCCTAAA
8107844 CCCTAAA
1 CCCTAAA
*
8107851 CCTTAAA
1 CCCTAAA
8107858 CCCTAAAA
1 CCCT-AAA
8107866 CCCTAAAA
1 CCCT-AAA
*
8107874 CCTTAAA
1 CCCTAAA
8107881 CCCTAAA
1 CCCTAAA
8107888 CCC
1 CCC
8107891 AGGCTTTCCT
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
7 53 0.73
8 20 0.27
ACGTcount: A:0.43, C:0.39, G:0.00, T:0.18
Consensus pattern (7 bp):
CCCTAAA
Found at i:8110950 original size:55 final size:52
Alignment explanation
Indices: 8110712--8110966 Score: 198
Period size: 55 Copynumber: 4.8 Consensus size: 52
8110702 ACACGGGTAT
* * ** *
8110712 CTTACCATTGCCATGACTTTTCATGGTCTTACGTGGTATCCTT---TT-GAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTAG-AA
* * * **
8110761 CTTACTATTGCCATGTCTTAACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTA-GAA
* *
8110814 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCC-TTGCC-T-TAG-AA
* ** ** * *
8110869 CTTATCAATGCCACTTTC-TGAAATGGTCTTACATGGAATCCTTGTCTTAGAAA
1 CTTACCAATGCCA-TGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTAG-AA
*
8110922 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
8110967 AAACCCTAAT
Statistics
Matches: 164, Mismatches: 28, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
49 38 0.23
52 4 0.02
53 43 0.26
54 13 0.08
55 62 0.38
56 4 0.02
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.37
Consensus pattern (52 bp):
CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTAGAA
Found at i:8114766 original size:45 final size:44
Alignment explanation
Indices: 8114710--8114848 Score: 122
Period size: 45 Copynumber: 3.1 Consensus size: 44
8114700 CCTGAGCTGA
* *
8114710 TGAATAGTAAGCTCGATTGAGCTAAAATGGTAAGCTCTATCGAGC
1 TGAACAGTAAGCTCCATTGAGCTAAAAT-GTAAGCTCTATCGAGC
* *
8114755 TGAACAGTAAGCTCTATTGAGCTAAACA-GTAAGATCATAT-GAGC
1 TGAACAGTAAGCTCCATTGAGCTAAA-ATGTAAGCTC-TATCGAGC
* * * *
8114799 TAAAACGGTAAGCTCCAATGAGCTGAAAGTAGTAAGCTCT-TACGAGC
1 T-GAACAGTAAGCTCCATTGAGCT-AAAAT-GTAAGCTCTAT-CGAGC
8114846 TGA
1 TGA
8114849 TATATCGGTA
Statistics
Matches: 76, Mismatches: 10, Indels: 15
0.75 0.10 0.15
Matches are distributed among these distances:
44 12 0.16
45 46 0.61
46 6 0.08
47 12 0.16
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (44 bp):
TGAACAGTAAGCTCCATTGAGCTAAAATGTAAGCTCTATCGAGC
Found at i:8114767 original size:22 final size:21
Alignment explanation
Indices: 8114739--8114848 Score: 85
Period size: 22 Copynumber: 4.9 Consensus size: 21
8114729 AGCTAAAATG
8114739 GTAAGCTCTATCGAGCTGAACA
1 GTAAGCTCTAT-GAGCTGAACA
*
8114761 GTAAGCTCTATTGAGCTAAACA
1 GTAAGCTCTA-TGAGCTGAACA
* * *
8114783 GTAAGATCATATGAGCTAAAACG
1 GTAAGCTC-TATGAGCT-GAACA
* *
8114806 GTAAGCTCCAATGAGCTGAAAGTA
1 GTAAGCT-CTATGAGCTG-AA-CA
*
8114830 GTAAGCTCTTACGAGCTGA
1 GTAAGCTC-TATGAGCTGA
8114849 TATATCGGTA
Statistics
Matches: 71, Mismatches: 10, Indels: 13
0.76 0.11 0.14
Matches are distributed among these distances:
22 32 0.45
23 24 0.34
24 15 0.21
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (21 bp):
GTAAGCTCTATGAGCTGAACA
Found at i:8120913 original size:39 final size:39
Alignment explanation
Indices: 8120869--8121140 Score: 508
Period size: 39 Copynumber: 7.0 Consensus size: 39
8120859 ATTATATTAT
* *
8120869 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
8120908 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
8120947 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
8120986 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
8121025 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
8121064 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
8121103 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
8121141 TCAGTGTCTT
Statistics
Matches: 227, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 227 1.00
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:8126142 original size:29 final size:29
Alignment explanation
Indices: 8126087--8126199 Score: 124
Period size: 29 Copynumber: 4.0 Consensus size: 29
8126077 GTGAGCATGA
* * *
8126087 ATATGAATGTGA-ATGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
*
8126115 ATATAAATGTGATTTGGGCCTAATGGGCT
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
8126144 ATATACA-GTTGGTTTGGGCCTAATGGGCC
1 ATATAAATG-TGATTTGGGCCTAATGGGCC
* *
8126173 ATATAAATATG-TTTGGGCTTAATGGGC
1 ATATAAATGTGATTTGGGCCTAATGGGC
8126200 TAGATACAGG
Statistics
Matches: 72, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 27 0.38
29 45 0.62
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:8126207 original size:57 final size:58
Alignment explanation
Indices: 8126100--8126208 Score: 175
Period size: 58 Copynumber: 1.9 Consensus size: 58
8126090 TGAATGTGAA
* *
8126100 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCTATATACAGTTGGTT
1 TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCTAGATACAGTTGGTT
* *
8126158 TGGGCCTAATGGGCCATATAAATATG-TTTGGGCTTAATGGGCTAGATACAG
1 TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCTAGATACAG
8126209 GTAAGTGGAT
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
57 23 0.49
58 24 0.51
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (58 bp):
TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCTAGATACAGTTGGTT
Found at i:8130366 original size:16 final size:16
Alignment explanation
Indices: 8130340--8130391 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 16
8130330 AGTAGATCGG
8130340 CAAAA-GCCGAAATGC
1 CAAAATGCCGAAATGC
*
8130355 CAAAATGCCGAAAAGC
1 CAAAATGCCGAAATGC
* *
8130371 CGAAATGTCGAAATGC
1 CAAAATGCCGAAATGC
8130387 CAAAA
1 CAAAA
8130392 AGCTGAAAGT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
15 5 0.16
16 26 0.84
ACGTcount: A:0.48, C:0.23, G:0.19, T:0.10
Consensus pattern (16 bp):
CAAAATGCCGAAATGC
Found at i:8130373 original size:24 final size:24
Alignment explanation
Indices: 8130341--8130399 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 24
8130331 GTAGATCGGC
*
8130341 AAAAGCCGAAATGCCAAAATGCCG
1 AAAAGCCGAAATGCCAAAATGCCA
* *
8130365 AAAAGCCGAAATGTCGAAATGCCA
1 AAAAGCCGAAATGCCAAAATGCCA
*
8130389 AAAAGCTGAAA
1 AAAAGCCGAAA
8130400 GTTTGGCTAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.49, C:0.20, G:0.20, T:0.10
Consensus pattern (24 bp):
AAAAGCCGAAATGCCAAAATGCCA
Found at i:8130399 original size:16 final size:16
Alignment explanation
Indices: 8130341--8130399 Score: 64
Period size: 16 Copynumber: 3.7 Consensus size: 16
8130331 GTAGATCGGC
8130341 AAAAGCCGAAATGCCA
1 AAAAGCCGAAATGCCA
* * *
8130357 AAATGCCGAAAAGCCG
1 AAAAGCCGAAATGCCA
* *
8130373 AAATGTCGAAATGCCA
1 AAAAGCCGAAATGCCA
*
8130389 AAAAGCTGAAA
1 AAAAGCCGAAA
8130400 GTTTGGCTAC
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.49, C:0.20, G:0.20, T:0.10
Consensus pattern (16 bp):
AAAAGCCGAAATGCCA
Found at i:8130550 original size:17 final size:18
Alignment explanation
Indices: 8130518--8130551 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
8130508 ACGAGCCAGA
8130518 ATGGGCTAGATGGGCCCG
1 ATGGGCTAGATGGGCCCG
*
8130536 ATGGGCT-GTTGGGCCC
1 ATGGGCTAGATGGGCCC
8130552 ATAATAGGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.12, C:0.24, G:0.44, T:0.21
Consensus pattern (18 bp):
ATGGGCTAGATGGGCCCG
Found at i:8130665 original size:29 final size:28
Alignment explanation
Indices: 8130610--8130724 Score: 113
Period size: 29 Copynumber: 4.0 Consensus size: 28
8130600 GTGAGCATGA
* * *
8130610 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
8130638 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * * * *
8130667 ATATAGAGGTCGTTTGTGCCTAATAGGCC
1 ATATAAATGT-GATTGGGCCTAATGGGCC
* * *
8130696 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
8130724 A
1 A
8130725 GATACAGGTA
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
28 26 0.38
29 42 0.61
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:8132285 original size:13 final size:13
Alignment explanation
Indices: 8132267--8132300 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
8132257 CCATAGACAC
8132267 GACCGTGTGCCTA
1 GACCGTGTGCCTA
8132280 GACCGTGTGCCTA
1 GACCGTGTGCCTA
8132293 GACCGTGT
1 GACCGTGT
8132301 CAAACCTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.15, C:0.29, G:0.32, T:0.24
Consensus pattern (13 bp):
GACCGTGTGCCTA
Found at i:8136315 original size:41 final size:41
Alignment explanation
Indices: 8136258--8136352 Score: 127
Period size: 41 Copynumber: 2.3 Consensus size: 41
8136248 GGGCCTACTG
* * * *
8136258 ACACAAGTTGACAGTCAAGATATAGCGACTCAATGCTGCTC
1 ACACAAGCTGTCAGTCAAGACATAGAGACTCAATGCTGCTC
* **
8136299 ACACAAGCTGTCAGTCAAGACGTAGAGACTCGGTGCTGCTC
1 ACACAAGCTGTCAGTCAAGACATAGAGACTCAATGCTGCTC
8136340 ACACAAGCTGTCA
1 ACACAAGCTGTCA
8136353 AGTAACTGCA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.32, C:0.26, G:0.22, T:0.20
Consensus pattern (41 bp):
ACACAAGCTGTCAGTCAAGACATAGAGACTCAATGCTGCTC
Found at i:8147143 original size:64 final size:64
Alignment explanation
Indices: 8147062--8147243 Score: 188
Period size: 67 Copynumber: 2.8 Consensus size: 64
8147052 AGACATTATG
* * *
8147062 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTGGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTGGACAAGAGAGCTACGAGATAA
* * * * * *
8147126 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTGGACAAGAGAGCTACGAGAT
8147191 AA
63 AA
* * * * *
8147193 ACTG--GTTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTGTACAAGAGA
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTGGACAAGAGA
8147244 CCTAAACTAT
Statistics
Matches: 94, Mismatches: 20, Indels: 9
0.76 0.16 0.07
Matches are distributed among these distances:
63 17 0.18
64 25 0.27
66 20 0.21
67 30 0.32
68 2 0.02
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTGGACAAGAGAGCTACGAGATAA
Found at i:8151300 original size:40 final size:40
Alignment explanation
Indices: 8151198--8151300 Score: 134
Period size: 40 Copynumber: 2.6 Consensus size: 40
8151188 TGTGTGAATT
*
8151198 TACTTTGATACCCCTGAATGCACATACGTGCCCCTATTTA
1 TACTTTGATACCCCTGAATGCATATACGTGCCCCTATTTA
* * ** * *
8151238 TACTTCGATACCCCTAAATGCATATACGTGCTTCTGTTTG
1 TACTTTGATACCCCTGAATGCATATACGTGCCCCTATTTA
*
8151278 TACTTTGGTACCCCTGAATGCAT
1 TACTTTGATACCCCTGAATGCAT
8151301 TATAATGTTC
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.23, C:0.27, G:0.15, T:0.35
Consensus pattern (40 bp):
TACTTTGATACCCCTGAATGCATATACGTGCCCCTATTTA
Found at i:8153437 original size:27 final size:27
Alignment explanation
Indices: 8153400--8153740 Score: 432
Period size: 27 Copynumber: 12.6 Consensus size: 27
8153390 ATCACATATT
* *
8153400 TGTAGGCTAGAATTATCGAAATACCCC
1 TGTAGGGTAGAATTACCGAAATACCCC
* *
8153427 TGTAAGGTAGAATTACCAAAATACCCC
1 TGTAGGGTAGAATTACCGAAATACCCC
*** *
8153454 TGTAGGGTAGAATTATTTAAATACCTC
1 TGTAGGGTAGAATTACCGAAATACCCC
* * *
8153481 TGTAAGGTAGAATTACTGGAATACCCC
1 TGTAGGGTAGAATTACCGAAATACCCC
* *
8153508 TGTAAGGTAGAATTATCGAAATACCCC
1 TGTAGGGTAGAATTACCGAAATACCCC
*
8153535 TGTAGGGTAGAATTACTGAAATACCCC
1 TGTAGGGTAGAATTACCGAAATACCCC
* *
8153562 TGTAAGGTAGAATTACCGAAATACCCT
1 TGTAGGGTAGAATTACCGAAATACCCC
*
8153589 TGTAGGGTAGAATTACTGAAATACCCC
1 TGTAGGGTAGAATTACCGAAATACCCC
8153616 TGTAGGGTAGAATTACCTGAAATACCCC
1 TGTAGGGTAGAATTACC-GAAATACCCC
* * *
8153644 TATAGGGTAGAATTACCGAAATATCCT
1 TGTAGGGTAGAATTACCGAAATACCCC
* *
8153671 TGTAGGGTAGAAATACTGAAATACCCC
1 TGTAGGGTAGAATTACCGAAATACCCC
*
8153698 TGTAGGGTAGAATTACCGAGATA-CCC
1 TGTAGGGTAGAATTACCGAAATACCCC
* *
8153724 TCGTGGGGTAAAATTAC
1 T-GTAGGGTAGAATTAC
8153741 TATTTTACCC
Statistics
Matches: 272, Mismatches: 40, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
26 4 0.01
27 242 0.89
28 26 0.10
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
TGTAGGGTAGAATTACCGAAATACCCC
Found at i:8154460 original size:31 final size:31
Alignment explanation
Indices: 8154421--8154501 Score: 91
Period size: 27 Copynumber: 2.7 Consensus size: 31
8154411 ACTCGCTGCA
8154421 ATCTGGTGGCTTCGCCACATATATATATCTGT
1 ATCTGGTGGCTTCGCCACA-ATATATATCTGT
* *
8154453 -TCTGGTGGCCTAGCCAC---A-ATATCTGT
1 ATCTGGTGGCTTCGCCACAATATATATCTGT
*
8154479 ATCTGGTGGCTTCGTCACAATAT
1 ATCTGGTGGCTTCGCCACAATAT
8154502 TTGGCAGCTT
Statistics
Matches: 39, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
26 8 0.21
27 15 0.38
30 1 0.03
31 15 0.38
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (31 bp):
ATCTGGTGGCTTCGCCACAATATATATCTGT
Found at i:8156506 original size:27 final size:27
Alignment explanation
Indices: 8156458--8156754 Score: 398
Period size: 27 Copynumber: 11.0 Consensus size: 27
8156448 AATCACATAT
* *
8156458 CTGTAGGCTAGCATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* * *
8156485 CTGTAAGGTAGAATTGCCGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
8156512 CTGTAGGGTAGAATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
*
8156539 CTGTAAGGTAGAATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
8156566 CTGTAAGGTAGAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
8156593 CTGTAGGGTAGAATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* ** * *
8156620 CTATAAAGTAGAATTACCGAAAAACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
8156647 TTATAGGGTAGAATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
** *
8156674 CTGTAGGGTAGAATTACCAAAATATCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
8156701 TTGTAGGGTAGAAATACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
8156728 CTGTAGGGTAGAATTACT-AAGATACCC
1 CTGTAGGGTAGAATTACTGAA-ATACCC
8156755 TCATGGGGTA
Statistics
Matches: 235, Mismatches: 34, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
26 2 0.01
27 233 0.99
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACTGAAATACCC
Found at i:8157518 original size:71 final size:67
Alignment explanation
Indices: 8157378--8157518 Score: 165
Period size: 67 Copynumber: 2.0 Consensus size: 67
8157368 GAGGAAGCGT
* * *
8157378 TCTGGCAACCCCGCTACAATCTGGTGGCCTCGCCACATATATTTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAACCCCGCTACAATCTGGTGGCCTCGCCACATATATTTGTTCTGGTGACCTAGCCACAA
8157443 TA
66 TA
* * * * * *
8157445 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCGCATATATATATCTGTTCTGGTGGCCTAGCC
1 TCTGGCAACCCCGCTACAATCTGGTGGCCTCG-C-CACATATAT-T-TGTTCTGGTGACCTAGCC
8157510 ACAATA
62 ACAATA
8157516 TCT
1 TCT
8157519 ATATCTGGTG
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
67 28 0.46
68 1 0.02
69 8 0.13
70 1 0.02
71 23 0.38
ACGTcount: A:0.19, C:0.29, G:0.21, T:0.30
Consensus pattern (67 bp):
TCTGGCAACCCCGCTACAATCTGGTGGCCTCGCCACATATATTTGTTCTGGTGACCTAGCCACAA
TA
Found at i:8159606 original size:35 final size:37
Alignment explanation
Indices: 8159565--8159641 Score: 88
Period size: 39 Copynumber: 2.1 Consensus size: 37
8159555 AGAATGAAAA
8159565 AAACAAA-GATGATT-G-AAATAAAGAAAATGATAATG
1 AAACAAATGAT-ATTGGAAAATAAAGAAAATGATAATG
* *
8159600 AAACAAATTTATTTTGGATAAATAAAGAAAATGATAATG
1 AAACAAA-TGATATTGGA-AAATAAAGAAAATGATAATG
8159639 AAA
1 AAA
8159642 ACATGAACCA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
35 7 0.20
36 2 0.06
37 3 0.09
39 23 0.66
ACGTcount: A:0.58, C:0.03, G:0.14, T:0.25
Consensus pattern (37 bp):
AAACAAATGATATTGGAAAATAAAGAAAATGATAATG
Found at i:8164186 original size:47 final size:47
Alignment explanation
Indices: 8164132--8164418 Score: 414
Period size: 47 Copynumber: 6.1 Consensus size: 47
8164122 TTAGGATTTT
** *
8164132 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
8164179 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
8164226 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCTGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
8164273 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
8164320 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
8164367 ATGTGGTGAATATGAACATGCATATATGTGGTAAAG-TGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
8164413 ATGTGA
1 ATGTGA
8164419 AATATATATA
Statistics
Matches: 214, Mismatches: 26, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
46 13 0.06
47 201 0.94
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:8164234 original size:25 final size:25
Alignment explanation
Indices: 8164159--8164234 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
8164149 GTGTATATAT
8164159 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
8164184 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
8164206 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
8164231 GTGA
1 GTGA
8164235 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:8164266 original size:25 final size:25
Alignment explanation
Indices: 8164238--8164309 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 25
8164228 GTGGTGAATA
8164238 TGAACATGCATATATGTGATAAGGC
1 TGAACATGCATATATGTGATAAGGC
* *
8164263 TG-A-ATGGC--CTATGTGATGAATG-
1 TGAACAT-GCATATATGTGAT-AAGGC
8164285 TGAACATGCATATATGTGATAAGGC
1 TGAACATGCATATATGTGATAAGGC
8164310 CGAATGGCCA
Statistics
Matches: 36, Mismatches: 4, Indels: 14
0.67 0.07 0.26
Matches are distributed among these distances:
22 10 0.28
23 8 0.22
24 8 0.22
25 10 0.28
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.29
Consensus pattern (25 bp):
TGAACATGCATATATGTGATAAGGC
Found at i:8164354 original size:141 final size:140
Alignment explanation
Indices: 8164131--8164418 Score: 504
Period size: 141 Copynumber: 2.0 Consensus size: 140
8164121 TTTAGGATTT
** *
8164131 TATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
*
8164196 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
8164261 GCTGAATGGCC
131 G-TGAATGGCC
8164272 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
*
8164337 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAA
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
*
8164402 GTGAATGGTC
131 GTGAATGGCC
*
8164412 AATGTGA
1 TATGTGA
8164419 AATATATATA
Statistics
Matches: 140, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
140 14 0.10
141 126 0.90
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (140 bp):
TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
GTGAATGGCC
Found at i:8164375 original size:25 final size:25
Alignment explanation
Indices: 8164300--8164375 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
8164290 ATGCATATAT
8164300 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
8164325 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
8164347 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
8164372 GTGA
1 GTGA
8164376 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:8164768 original size:37 final size:37
Alignment explanation
Indices: 8164623--8164767 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
8164613 GGAAATATAT
* *
8164623 TCCGGGTGAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
8164660 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
8164697 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
8164734 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
8164768 TCGTCTGAGC
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:8166321 original size:122 final size:122
Alignment explanation
Indices: 8166104--8166347 Score: 479
Period size: 122 Copynumber: 2.0 Consensus size: 122
8166094 ATTTAAGAGT
8166104 ATAATTAGACCATGTTAAGTGTTATTGAAAACTATAAGTAGATATGGTTATTAGAGGGTAACCTA
1 ATAATTAGACCATGTTAAGTGTTATTGAAAACTATAAGTAGATATGGTTATTAGAGGGTAACCTA
8166169 AGGCTTGGAAAATAGCCTAACAAGGTTCACACGGGTGGATACATGGGCGTGTGTCTA
66 AGGCTTGGAAAATAGCCTAACAAGGTTCACACGGGTGGATACATGGGCGTGTGTCTA
*
8166226 ATAATTAGACCATGTTAAGTGTTATTGAAAACTATAAGTAGATATGGTTATTAGAGGGTGACCTA
1 ATAATTAGACCATGTTAAGTGTTATTGAAAACTATAAGTAGATATGGTTATTAGAGGGTAACCTA
8166291 AGGCTTGGAAAATAGCCTAACAAGGTTCACACGGGTGGATACATGGGCGTGTGTCTA
66 AGGCTTGGAAAATAGCCTAACAAGGTTCACACGGGTGGATACATGGGCGTGTGTCTA
8166348 GGCCGTGTGC
Statistics
Matches: 121, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
122 121 1.00
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (122 bp):
ATAATTAGACCATGTTAAGTGTTATTGAAAACTATAAGTAGATATGGTTATTAGAGGGTAACCTA
AGGCTTGGAAAATAGCCTAACAAGGTTCACACGGGTGGATACATGGGCGTGTGTCTA
Found at i:8172325 original size:49 final size:49
Alignment explanation
Indices: 8172266--8172363 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
8172256 ATTGGGCCTT
8172266 GAGTATGGGTCCGTAAGGAGGTTGTATATAAGTATTTATTGTGTAGGGA
1 GAGTATGGGTCCGTAAGGAGGTTGTATATAAGTATTTATTGTGTAGGGA
*
8172315 GAGTATGGGTCCGTAAGGAGGTTGTATATCAGTATTTATTGTGTAGGGA
1 GAGTATGGGTCCGTAAGGAGGTTGTATATAAGTATTTATTGTGTAGGGA
8172364 AATGAAACAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.26, C:0.05, G:0.35, T:0.35
Consensus pattern (49 bp):
GAGTATGGGTCCGTAAGGAGGTTGTATATAAGTATTTATTGTGTAGGGA
Found at i:8174561 original size:46 final size:46
Alignment explanation
Indices: 8174494--8175405 Score: 1677
Period size: 46 Copynumber: 19.8 Consensus size: 46
8174484 TGTAACCCGC
* * *
8174494 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
8174540 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* ***
8174586 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8174633 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8174679 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8174725 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8174771 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8174817 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8174863 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8174909 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8174955 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8175001 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8175047 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8175093 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8175139 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8175185 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8175231 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8175277 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8175323 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8175369 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
8175406 TGCTCAACCA
Statistics
Matches: 845, Mismatches: 14, Indels: 14
0.97 0.02 0.02
Matches are distributed among these distances:
43 1 0.00
44 3 0.00
46 805 0.95
47 31 0.04
49 4 0.00
50 1 0.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Done.