Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 26 of 235
Found at i:8176820 original size:20 final size:18
Alignment explanation
Indices: 8176791--8176834 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
8176781 TAGGTAGTTT
* *
8176791 TGGGCCATGTTGGGCCTAGA
1 TGGGCTATG-TGGGCCCA-A
8176811 TGGGCTATGTGGGCCCAA
1 TGGGCTATGTGGGCCCAA
8176829 TGGGCT
1 TGGGCT
8176835 CGTAGGCCCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 7 0.32
19 7 0.32
20 8 0.36
ACGTcount: A:0.14, C:0.20, G:0.41, T:0.25
Consensus pattern (18 bp):
TGGGCTATGTGGGCCCAA
Found at i:8177119 original size:27 final size:27
Alignment explanation
Indices: 8177063--8177140 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 27
8177053 ACCCTGGTTT
* * *
8177063 GTAAAATTACCATAATGCCCGTATAGG
1 GTAAAATGACCATAATACCCTTATAGG
* *
8177090 GTAAAATGACCATAATACCCTTGTATG
1 GTAAAATGACCATAATACCCTTATAGG
* * *
8177117 GTAGAATGACGATTATACCCTTAT
1 GTAAAATGACCATAATACCCTTAT
8177141 GTTTCGTATG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (27 bp):
GTAAAATGACCATAATACCCTTATAGG
Found at i:8191299 original size:50 final size:49
Alignment explanation
Indices: 8191184--8191507 Score: 259
Period size: 50 Copynumber: 6.5 Consensus size: 49
8191174 TGAGGTCGCA
* * * *
8191184 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA--TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGA-TGTGAGGACACG
* * **
8191235 TGTGTAGTAATAAGTGCAGGCTACTACTTGTATTAGATGGTGAGGACACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GTGAGGACACG
* * *
8191285 TGTGTAGTACTAAGTGCAGCCTACTACGTGTACCAGACTGT-TGG--TCG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TGTGAGGACACG
** * * * *
8191332 CATGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA--TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGA-TGTGAGGACACG
** *
8191383 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATAGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GTGAGGACACG
* * * *
8191433 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGT-TGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TGTGAGGACACG
*
8191482 TGTGTAGTACTAAGTCCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
8191508 TGCATACCAG
Statistics
Matches: 223, Mismatches: 36, Indels: 30
0.77 0.12 0.10
Matches are distributed among these distances:
47 31 0.14
48 14 0.06
49 32 0.14
50 86 0.39
51 60 0.27
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGTGAGGACACG
Found at i:8191407 original size:98 final size:98
Alignment explanation
Indices: 8191281--8191521 Score: 265
Period size: 98 Copynumber: 2.4 Consensus size: 98
8191271 ATGGTGAGGA
* *
8191281 CACGTGTGTAGTACTAAGTGCAGCCTACTACGTGTACCAGACT-GT-TGGT-CGCATGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTGAGGTACGCATGTAGTACT
*
8191343 AAGTGCAGGCTACTATGCGTACCCGAAAACTG-TGAT
65 AAGTGCAGGCTACTACGCGTA-CC--AAACTGTTGAT
** **
8191379 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATAGTGAGGTCACGTGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTGAGGT-ACGCATGTAGTACT
* * *
8191444 AAGTGCAGGCTACTACGTGTACCAGACTGTTGGT
65 AAGTGCAGGCTACTACGCGTACCAAACTGTTGAT
* * * * **
8191478 CGCATGTGTAGTACTAAGTCCAGGCTACTATGCATACCAGATAG
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
8191522 CTTTGGCTAC
Statistics
Matches: 120, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
97 1 0.01
98 45 0.38
99 42 0.35
100 2 0.02
101 30 0.25
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (98 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTGAGGTACGCATGTAGTACTA
AGTGCAGGCTACTACGCGTACCAAACTGTTGAT
Found at i:8191457 original size:148 final size:149
Alignment explanation
Indices: 8191177--8191515 Score: 590
Period size: 148 Copynumber: 2.3 Consensus size: 149
8191167 TCTATTGTGA
8191177 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAG
1 GGTCGCA-GTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAG
* *
8191242 TAATAAGTGCAGGCTACTACTTGTATTAGATGGTGAGGACACGTGTGTAGTACTAAGTGCAGCCT
65 TAATAAGTGCAGGCTACTACGTGTATTAGATAGTGAGGACACGTGTGTAGTACTAAGTGCAGCCT
8191307 ACTACGTGTACCAGACTGTT
130 ACTACGTGTACCAGACTGTT
8191327 GGTCGCA-TGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAGT
1 GGTCGCAGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAGT
* * *
8191391 ACTAAGTGCAGGCTACTACGTGTATTAGATAGTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTA
66 AATAAGTGCAGGCTACTACGTGTATTAGATAGTGAGGACACGTGTGTAGTACTAAGTGCAGCCTA
8191456 CTACGTGTACCAGACTGTT
131 CTACGTGTACCAGACTGTT
* *
8191475 GGTCGCATGTGTAGTACTAAGTCCAGGCTACTATGCATACC
1 GGTCGCA-GTGTAGTACTAAGTGCAGGCTACTATGCGTACC
8191516 AGATAGCTTT
Statistics
Matches: 180, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
148 143 0.79
150 37 0.21
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (149 bp):
GGTCGCAGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAGT
AATAAGTGCAGGCTACTACGTGTATTAGATAGTGAGGACACGTGTGTAGTACTAAGTGCAGCCTA
CTACGTGTACCAGACTGTT
Found at i:8198285 original size:15 final size:14
Alignment explanation
Indices: 8198260--8198369 Score: 148
Period size: 15 Copynumber: 7.4 Consensus size: 14
8198250 GCCCAAACCA
8198260 TAGGGTTTAGGGTT
1 TAGGGTTTAGGGTT
*
8198274 TATGGTTTTAGGGTT
1 TA-GGGTTTAGGGTT
*
8198289 TAGGGTTTTATGGTTT
1 TAGGG-TTTA-GGGTT
8198305 TAGGGTTTAGGGTTT
1 TAGGGTTTAGGG-TT
8198320 TAGGGTTTTAGGGTTT
1 TAGGG-TTTAGGG-TT
8198336 TAGGGTTTAGGGTT
1 TAGGGTTTAGGGTT
8198350 TAGGGTTTAGGGTT
1 TAGGGTTTAGGGTT
8198364 TAGGGT
1 TAGGGT
8198370 GATGCATCAC
Statistics
Matches: 87, Mismatches: 4, Indels: 10
0.86 0.04 0.10
Matches are distributed among these distances:
14 28 0.32
15 35 0.40
16 24 0.28
ACGTcount: A:0.14, C:0.00, G:0.39, T:0.47
Consensus pattern (14 bp):
TAGGGTTTAGGGTT
Found at i:8198288 original size:8 final size:7
Alignment explanation
Indices: 8198260--8198369 Score: 148
Period size: 7 Copynumber: 14.9 Consensus size: 7
8198250 GCCCAAACCA
8198260 TAGGGTT
1 TAGGGTT
8198267 TAGGGTT
1 TAGGGTT
*
8198274 TATGGTTT
1 TA-GGGTT
8198282 TAGGGTT
1 TAGGGTT
8198289 TAGGGTTT
1 TAGGG-TT
*
8198297 TATGGTTT
1 TA-GGGTT
8198305 TAGGGTT
1 TAGGGTT
8198312 TAGGGTTT
1 TAGGG-TT
8198320 TAGGGTTT
1 TAGGG-TT
8198328 TAGGGTTT
1 TAGGG-TT
8198336 TAGGGTT
1 TAGGGTT
8198343 TAGGGTT
1 TAGGGTT
8198350 TAGGGTT
1 TAGGGTT
8198357 TAGGGTT
1 TAGGGTT
8198364 TAGGGT
1 TAGGGT
8198370 GATGCATCAC
Statistics
Matches: 95, Mismatches: 4, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
7 56 0.59
8 37 0.39
9 2 0.02
ACGTcount: A:0.14, C:0.00, G:0.39, T:0.47
Consensus pattern (7 bp):
TAGGGTT
Found at i:8198302 original size:23 final size:23
Alignment explanation
Indices: 8198260--8198364 Score: 162
Period size: 23 Copynumber: 4.7 Consensus size: 23
8198250 GCCCAAACCA
8198260 TAGGGTTTAGGG-TTTATGGTTT
1 TAGGGTTTAGGGTTTTATGGTTT
8198282 TAGGGTTTAGGGTTTTATGGTTT
1 TAGGGTTTAGGGTTTTATGGTTT
*
8198305 TAGGGTTTAGGGTTTTAGGGTTT
1 TAGGGTTTAGGGTTTTATGGTTT
*
8198328 TAGGGTTTTAGGG-TTTA-GGGTT
1 TAGGG-TTTAGGGTTTTATGGTTT
8198350 TAGGGTTTAGGGTTT
1 TAGGGTTTAGGGTTT
8198365 AGGGTGATGC
Statistics
Matches: 78, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
21 7 0.09
22 23 0.29
23 41 0.53
24 7 0.09
ACGTcount: A:0.13, C:0.00, G:0.38, T:0.49
Consensus pattern (23 bp):
TAGGGTTTAGGGTTTTATGGTTT
Found at i:8201872 original size:58 final size:57
Alignment explanation
Indices: 8201799--8201911 Score: 181
Period size: 58 Copynumber: 2.0 Consensus size: 57
8201789 CATGTATATG
* *
8201799 AATGTGATTTAGGCCTAATGGGCCATATGAATGTGATTTGGGCTTAATGGTCCATACA
1 AATGTGATTTAGGCCTAATGGGCCATATGAATGAGA-TTGGGCTTAATGGGCCATACA
* *
8201857 AATGTGATTTGGGCCTAATGGGCCATATGAATGAGATTGGGCTTAGTGGGCCATA
1 AATGTGATTTAGGCCTAATGGGCCATATGAATGAGATTGGGCTTAATGGGCCATA
8201912 TGCATGTATG
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
57 17 0.33
58 34 0.67
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (57 bp):
AATGTGATTTAGGCCTAATGGGCCATATGAATGAGATTGGGCTTAATGGGCCATACA
Found at i:8201906 original size:28 final size:29
Alignment explanation
Indices: 8201794--8201918 Score: 162
Period size: 29 Copynumber: 4.3 Consensus size: 29
8201784 GAAAGCATGT
*
8201794 ATATGAATGTGATTTAGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
8201823 ATATGAATGTGATTTGGGCTTAATGGTCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
**
8201852 ATACAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
8201881 ATATGAATGAGA-TTGGGCTTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
8201909 ATATGCATGT
1 ATATGAATGT
8201919 ATGTAGACTT
Statistics
Matches: 82, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
28 22 0.27
29 60 0.73
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:8203852 original size:46 final size:46
Alignment explanation
Indices: 8203802--8203977 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
8203792 TGGTTGAGCA
8203802 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
8203848 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
8203893 CATCCGAACTCATTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
8203941 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
8203978 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 7 0.07
46 58 0.54
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:8203958 original size:93 final size:93
Alignment explanation
Indices: 8203799--8203969 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
8203789 GGATGGTTGA
* * *
8203799 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATGTCCCAACTCGTTGAGT
8203864 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
8203892 GCATCCGAACTCATTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATG-CCCAAGCTCGTTGAG
1 GCATCCGAACTCATTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATGTCCCAA-CTCGTTGAG
8203956 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
8203970 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 4 0.05
93 70 0.95
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATGTCCCAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:8208679 original size:29 final size:29
Alignment explanation
Indices: 8208614--8208709 Score: 106
Period size: 29 Copynumber: 3.3 Consensus size: 29
8208604 GAAAGCATGT
8208614 ATATGAATGTGATTTGGGCCTAATGGTCC
1 ATATGAATGTGATTTGGGCCTAATGGTCC
*
8208643 ATACGAATGTGATTTGGGCCTAATGGGT-C
1 ATATGAATGTGATTTGGGCCTAAT-GGTCC
* * * * *
8208672 ATTTGAATGAGA-TTCGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGTCC
*
8208700 ATATGCATGT
1 ATATGAATGT
8208710 ATGTAGACTT
Statistics
Matches: 55, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
27 2 0.04
28 17 0.31
29 33 0.60
30 3 0.05
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGTCC
Found at i:8215540 original size:50 final size:50
Alignment explanation
Indices: 8215465--8215562 Score: 187
Period size: 50 Copynumber: 2.0 Consensus size: 50
8215455 CCATATATTT
8215465 ATAGATTCCTCTCTAAGTCTAGTTTCTATAGAAACAAACGGCATCAGTTG
1 ATAGATTCCTCTCTAAGTCTAGTTTCTATAGAAACAAACGGCATCAGTTG
*
8215515 ATAGATTCCTCTCTGAGTCTAGTTTCTATAGAAACAAACGGCATCAGT
1 ATAGATTCCTCTCTAAGTCTAGTTTCTATAGAAACAAACGGCATCAGT
8215563 ATTGGAGCCC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (50 bp):
ATAGATTCCTCTCTAAGTCTAGTTTCTATAGAAACAAACGGCATCAGTTG
Found at i:8215753 original size:62 final size:62
Alignment explanation
Indices: 8215678--8215801 Score: 230
Period size: 62 Copynumber: 2.0 Consensus size: 62
8215668 CCGACCAAAA
*
8215678 ATTCTAGAAAAAAATATGTAGATGGGCATATGAGTCTAGTTTCAGGGAAAAATCACGAAACT
1 ATTCTAGAAAAAAATATGTAGATGGGAATATGAGTCTAGTTTCAGGGAAAAATCACGAAACT
*
8215740 ATTCTAGAAAAAAATATGTAGATGGGAATATGAGTTTAGTTTCAGGGAAAAATCACGAAACT
1 ATTCTAGAAAAAAATATGTAGATGGGAATATGAGTCTAGTTTCAGGGAAAAATCACGAAACT
8215802 GATTTTCGAG
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.43, C:0.10, G:0.21, T:0.27
Consensus pattern (62 bp):
ATTCTAGAAAAAAATATGTAGATGGGAATATGAGTCTAGTTTCAGGGAAAAATCACGAAACT
Found at i:8217981 original size:20 final size:20
Alignment explanation
Indices: 8217935--8217973 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
8217925 TTTCCACATG
8217935 GGCGTGTCCCAAAGCACACC
1 GGCGTGTCCCAAAGCACACC
*
8217955 GGCGTGTCTCAAAGCACAC
1 GGCGTGTCCCAAAGCACAC
8217974 GGACGTGTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.36, G:0.26, T:0.13
Consensus pattern (20 bp):
GGCGTGTCCCAAAGCACACC
Found at i:8219113 original size:40 final size:40
Alignment explanation
Indices: 8219049--8219124 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
8219039 ACTATGTTTG
8219049 GCACTAAGTGTGCGGTTCAAAATAGCTTCGGCTATAAATA
1 GCACTAAGTGTGCGGTTCAAAATAGCTTCGGCTATAAATA
** *
8219089 GCACTAAGTGTGCGAGTT-GGAATAGCTTTGGCTATA
1 GCACTAAGTGTGCG-GTTCAAAATAGCTTCGGCTATA
8219125 TGAGGCACCA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
40 29 0.91
41 3 0.09
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (40 bp):
GCACTAAGTGTGCGGTTCAAAATAGCTTCGGCTATAAATA
Found at i:8223289 original size:15 final size:15
Alignment explanation
Indices: 8223269--8223299 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8223259 ATGCGAGAAT
8223269 AAAAATTCATAATTA
1 AAAAATTCATAATTA
*
8223284 AAAAATTCCTAATTA
1 AAAAATTCATAATTA
8223299 A
1 A
8223300 CTTAATCCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.10, G:0.00, T:0.32
Consensus pattern (15 bp):
AAAAATTCATAATTA
Found at i:8225642 original size:20 final size:20
Alignment explanation
Indices: 8225617--8225655 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
8225607 TTTGAAGATT
8225617 ATTGATAAATATTTTATATA
1 ATTGATAAATATTTTATATA
8225637 ATTGATAAATATTTTATAT
1 ATTGATAAATATTTTATAT
8225656 TTAAGATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (20 bp):
ATTGATAAATATTTTATATA
Found at i:8226668 original size:18 final size:18
Alignment explanation
Indices: 8226645--8226683 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
8226635 TCAAACAAAT
8226645 AATATT-AATTGTTTAAAA
1 AATATTGAA-TGTTTAAAA
*
8226663 AATATTGAATGTTTACAA
1 AATATTGAATGTTTAAAA
8226681 AAT
1 AAT
8226684 TAAATTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 17 0.89
19 2 0.11
ACGTcount: A:0.49, C:0.03, G:0.08, T:0.41
Consensus pattern (18 bp):
AATATTGAATGTTTAAAA
Found at i:8228893 original size:61 final size:60
Alignment explanation
Indices: 8228828--8228999 Score: 192
Period size: 61 Copynumber: 2.9 Consensus size: 60
8228818 TTGTTATTAA
* * *
8228828 ATTTTAATAAAATTATTATTAAATATAATTTAATAAAAATAATAATAAATAACTTAATCAT
1 ATTTTAATAAAATTATTATTAAATATAATTTAATAAAAAT-ATAATATATAACTTAATAAC
* * *
8228889 ATTTTAA-AACAATTATTATTAAATACAATTAAAT-AAAAT-T-ATATATAATTTAATAAC
1 ATTTTAATAA-AATTATTATTAAATATAATTTAATAAAAATATAATATATAACTTAATAAC
*
8228946 ATTCTTAATATAATTATTATTAAAATATGAA-TTAATAAAAATCATAATATATAA
1 ATT-TTAATAAAATTATTATT-AAATAT-AATTTAATAAAAAT-ATAATATATAA
8229000 TGTTATAAAA
Statistics
Matches: 93, Mismatches: 9, Indels: 16
0.79 0.08 0.14
Matches are distributed among these distances:
57 16 0.17
58 15 0.16
59 10 0.11
60 14 0.15
61 29 0.31
62 1 0.01
63 8 0.09
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.41
Consensus pattern (60 bp):
ATTTTAATAAAATTATTATTAAATATAATTTAATAAAAATATAATATATAACTTAATAAC
Found at i:8232569 original size:66 final size:66
Alignment explanation
Indices: 8232461--8232585 Score: 148
Period size: 66 Copynumber: 1.9 Consensus size: 66
8232451 CATTTTGAAC
* * * **
8232461 GTAAGACCATGGCTGGGCTATGGCATTCTGATGATAATACCATAATTGGGTTATGGCACTACAAA
1 GTAAGACCATGGCTGGGCCATGGCATGCTGATGATAAGACCATAATTGGACTATGGCACTACAAA
8232526 T
66 T
*
8232527 GTAAGACCATGG-TAGGGCCATGGCAATGCATG-TG-TAAGACCATAGTTGGACTATGGCAC
1 GTAAGACCATGGCT-GGGCCATGGC-ATGC-TGATGATAAGACCATAATTGGACTATGGCAC
8232586 AAAAAGAACG
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
65 1 0.02
66 42 0.84
67 5 0.10
68 2 0.04
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.26
Consensus pattern (66 bp):
GTAAGACCATGGCTGGGCCATGGCATGCTGATGATAAGACCATAATTGGACTATGGCACTACAAA
T
Found at i:8238944 original size:42 final size:42
Alignment explanation
Indices: 8238897--8239058 Score: 229
Period size: 42 Copynumber: 3.9 Consensus size: 42
8238887 CAAACGAAAA
*
8238897 CGCCGCTAAAGACCATGTTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
*
8238939 CGCCGCTAAAGAACATGATT-TTTAGCGGTGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATG-TTCTTTAGCGGCGTTTTTTTCTAAG
* *
8238981 CGCCTCTAAATAACATGTTCTTTAGCGGCG-TTTTTTCTTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTC-TAAG
* * *
8239023 CGCCGCTAAAGAATATGTTCGTTAGCAGCGTTTTTT
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTT
8239059 ACAAAAACGC
Statistics
Matches: 106, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
41 9 0.08
42 90 0.85
43 7 0.07
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
Found at i:8244917 original size:25 final size:25
Alignment explanation
Indices: 8244849--8244987 Score: 138
Period size: 25 Copynumber: 5.5 Consensus size: 25
8244839 ATTCTTTAAG
* **
8244849 AATTATGTAACTGCTGTATTATGAA
1 AATTATGTAAGTTATGTATTATGAA
*
8244874 GAATTATGTTAGTTATGTATTATGAA
1 -AATTATGTAAGTTATGTATTATGAA
* *
8244900 AATTATGTAAGCTGTGTACTGTAT--A
1 AATTATGTAAGTTATGTA-T-TATGAA
* * *
8244925 AGTTATGTAAGTTTTATATTATGAA
1 AATTATGTAAGTTATGTATTATGAA
**
8244950 AATTAAATAAGTTATGTATTATGAA
1 AATTATGTAAGTTATGTATTATGAA
8244975 AATTATGTAAGTT
1 AATTATGTAAGTT
8244988 CAATATTATG
Statistics
Matches: 91, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
23 3 0.03
24 1 0.01
25 62 0.68
26 22 0.24
27 3 0.03
ACGTcount: A:0.37, C:0.03, G:0.17, T:0.43
Consensus pattern (25 bp):
AATTATGTAAGTTATGTATTATGAA
Found at i:8244994 original size:25 final size:24
Alignment explanation
Indices: 8244864--8245008 Score: 109
Period size: 25 Copynumber: 5.8 Consensus size: 24
8244854 TGTAACTGCT
*
8244864 GTATTATGAAGAATTATGTTAGTTA
1 GTATTATGAA-AATTATGTAAGTTA
8244889 TGTATTATGAAAATTATGTAAGCTGT-
1 -GTATTATGAAAATTATGTAAG-T-TA
*
8244915 GTACTGTAT--AAGTTATGTAAGTTTTA
1 GTA-T-TATGAAAATTATGTAAG--TTA
**
8244941 -TATTATGAAAATTAAATAAGTTA
1 GTATTATGAAAATTATGTAAGTTA
8244964 TGTATTATGAAAATTATGTAAGTTCA
1 -GTATTATGAAAATTATGTAAGTT-A
* * *
8244990 ATATTATGTAAGTTATGTA
1 GTATTATGAAAATTATGTA
8245009 TTACGAAAAT
Statistics
Matches: 97, Mismatches: 11, Indels: 23
0.74 0.08 0.18
Matches are distributed among these distances:
23 6 0.06
24 1 0.01
25 72 0.74
26 14 0.14
27 4 0.04
ACGTcount: A:0.38, C:0.02, G:0.17, T:0.43
Consensus pattern (24 bp):
GTATTATGAAAATTATGTAAGTTA
Found at i:8244995 original size:16 final size:16
Alignment explanation
Indices: 8244976--8245058 Score: 65
Period size: 16 Copynumber: 5.6 Consensus size: 16
8244966 TATTATGAAA
8244976 ATTATGTAAGTTCAAT
1 ATTATGTAAGTTCAAT
8244992 ATTATGTAAGTT--AT
1 ATTATGTAAGTTCAAT
* * *
8245006 -GTAT-TACG---AAA
1 ATTATGTAAGTTCAAT
8245017 ATTATGTAAGTTCAA-
1 ATTATGTAAGTTCAAT
*
8245032 AATATGTAAGTTCCAAT
1 ATTATGTAAGTT-CAAT
8245049 ATTATGTAAG
1 ATTATGTAAG
8245059 CTATGTATTA
Statistics
Matches: 52, Mismatches: 7, Indels: 15
0.70 0.09 0.20
Matches are distributed among these distances:
11 1 0.02
12 6 0.12
13 6 0.12
14 2 0.04
15 11 0.21
16 17 0.33
17 9 0.17
ACGTcount: A:0.40, C:0.06, G:0.14, T:0.40
Consensus pattern (16 bp):
ATTATGTAAGTTCAAT
Found at i:8245002 original size:41 final size:40
Alignment explanation
Indices: 8244957--8245043 Score: 147
Period size: 41 Copynumber: 2.1 Consensus size: 40
8244947 GAAAATTAAA
* *
8244957 TAAGTTATGTATTATGAAAATTATGTAAGTTCAATATTATG
1 TAAGTTATGTATTACGAAAATTATGTAAGTTCAA-AATATG
8244998 TAAGTTATGTATTACGAAAATTATGTAAGTTCAAAATATG
1 TAAGTTATGTATTACGAAAATTATGTAAGTTCAAAATATG
8245038 TAAGTT
1 TAAGTT
8245044 CCAATATTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
40 11 0.25
41 33 0.75
ACGTcount: A:0.40, C:0.03, G:0.15, T:0.41
Consensus pattern (40 bp):
TAAGTTATGTATTACGAAAATTATGTAAGTTCAAAATATG
Found at i:8245034 original size:57 final size:57
Alignment explanation
Indices: 8244973--8245083 Score: 170
Period size: 57 Copynumber: 1.9 Consensus size: 57
8244963 ATGTATTATG
* *
8244973 AAAATTATGTAAGTT-CAATATTATGTAAGTTATGTATTACGAAAATTATGTAAGTTC
1 AAAA-TATGTAAGTTCCAATATTATGTAAGCTATGTATTACGAAAATTAAGTAAGTTC
* *
8245030 AAAATATGTAAGTTCCAATATTATGTAAGCTATGTATTATGAAATTTAAGTAAG
1 AAAATATGTAAGTTCCAATATTATGTAAGCTATGTATTACGAAAATTAAGTAAG
8245084 CTGTGTATTG
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
56 10 0.20
57 39 0.80
ACGTcount: A:0.41, C:0.05, G:0.14, T:0.39
Consensus pattern (57 bp):
AAAATATGTAAGTTCCAATATTATGTAAGCTATGTATTACGAAAATTAAGTAAGTTC
Found at i:8245056 original size:17 final size:15
Alignment explanation
Indices: 8244974--8245058 Score: 65
Period size: 15 Copynumber: 5.8 Consensus size: 15
8244964 TGTATTATGA
8244974 AAATTATGTAAGTTC
1 AAATTATGTAAGTTC
8244989 AATATTATGTAAGTT-
1 AA-ATTATGTAAGTTC
* *
8245004 --ATGTAT-TACG--A
1 AAAT-TATGTAAGTTC
8245015 AAATTATGTAAGTTC
1 AAATTATGTAAGTTC
*
8245030 AAAATATGTAAGTTCC
1 AAATTATGTAAGTT-C
8245046 AATATTATGTAAG
1 AA-ATTATGTAAG
8245059 CTATGTATTA
Statistics
Matches: 55, Mismatches: 5, Indels: 18
0.71 0.06 0.23
Matches are distributed among these distances:
12 8 0.15
13 8 0.15
15 15 0.27
16 15 0.27
17 9 0.16
ACGTcount: A:0.41, C:0.06, G:0.14, T:0.39
Consensus pattern (15 bp):
AAATTATGTAAGTTC
Found at i:8245138 original size:16 final size:16
Alignment explanation
Indices: 8245117--8245178 Score: 63
Period size: 16 Copynumber: 3.6 Consensus size: 16
8245107 GGTTATGAAA
8245117 ATTATGTAAGTTCAAT
1 ATTATGTAAGTTCAAT
*
8245133 ATTATGTAAGTT-ATGTAGA
1 ATTATGTAAGTTCA---A-T
8245152 ATTATGTAAGTTCCAAT
1 ATTATGTAAGTT-CAAT
8245169 ATTATGTAAG
1 ATTATGTAAG
8245179 CTATGTATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
15 1 0.03
16 12 0.32
17 10 0.26
18 2 0.05
19 12 0.32
21 1 0.03
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (16 bp):
ATTATGTAAGTTCAAT
Found at i:8245162 original size:35 final size:36
Alignment explanation
Indices: 8245100--8245185 Score: 131
Period size: 36 Copynumber: 2.4 Consensus size: 36
8245090 ATTGTATAAG
*
8245100 TTATGTAGGTTATG-AAAATTATGTAAGTT-CAATA
1 TTATGTAAGTTATGTAAAATTATGTAAGTTCCAATA
*
8245134 TTATGTAAGTTATGTAGAATTATGTAAGTTCCAATA
1 TTATGTAAGTTATGTAAAATTATGTAAGTTCCAATA
*
8245170 TTATGTAAGCTATGTA
1 TTATGTAAGTTATGTA
8245186 TTATGAAATT
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
34 13 0.28
35 14 0.30
36 20 0.43
ACGTcount: A:0.36, C:0.05, G:0.17, T:0.42
Consensus pattern (36 bp):
TTATGTAAGTTATGTAAAATTATGTAAGTTCCAATA
Found at i:8245181 original size:120 final size:120
Alignment explanation
Indices: 8245034--8245614 Score: 1011
Period size: 120 Copynumber: 4.8 Consensus size: 120
8245024 AAGTTCAAAA
8245034 TATGTAAGTTCCAATATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGTGTATTGTATAA
1 TATGTAAGTTCCAATATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGTGTATTGTATAA
8245099 GTTATGTAGGTTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTAGAAT
66 GTTATGTAGGTTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTAGAAT
8245154 TATGTAAGTTCCAATATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGTGTATTGTATAA
1 TATGTAAGTTCCAATATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGTGTATTGTATAA
8245219 GTTATGTAGGTTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTAGAAT
66 GTTATGTAGGTTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTAGAAT
8245274 TATGTAAGTTCCAATATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGTGTATTGTATAA
1 TATGTAAGTTCCAATATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGTGTATTGTATAA
* * *
8245339 GTTATGTAGATTATGTAAGTTATGTAAGTTCAATATTATGTAAGTTATGTAGAAT
66 GTTATGTAGGTTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTAGAAT
8245394 TATGTAAGTTCCAATATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGTGTATTGTATAA
1 TATGTAAGTTCCAATATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGTGTATTGTATAA
8245459 GTTATGTAGGTTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTACTATGAAAAT
66 GTTATGTAGGTTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATG---TA-G--AAT
* * * * * *
8245520 TATGTAAGTT-CAATATTATGTAAGCTGTGTATTATAAACAATTATGTAAGTTGTGTATTGAATA
1 TATGTAAGTTCCAATATTATGTAAGCTATGTATTATGAA-ATTTAAGTAAGCTGTGTATTGTATA
8245584 AGTTATGTAGGTTATGAAAATTATGTAAGTT
65 AGTTATGTAGGTTATGAAAATTATGTAAGTT
8245615 ATGTACTGTG
Statistics
Matches: 442, Mismatches: 12, Indels: 8
0.96 0.03 0.02
Matches are distributed among these distances:
120 348 0.79
123 2 0.00
124 1 0.00
125 26 0.06
126 65 0.15
ACGTcount: A:0.36, C:0.04, G:0.18, T:0.42
Consensus pattern (120 bp):
TATGTAAGTTCCAATATTATGTAAGCTATGTATTATGAAATTTAAGTAAGCTGTGTATTGTATAA
GTTATGTAGGTTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTAGAAT
Found at i:8245258 original size:16 final size:16
Alignment explanation
Indices: 8245237--8245298 Score: 63
Period size: 16 Copynumber: 3.6 Consensus size: 16
8245227 GGTTATGAAA
8245237 ATTATGTAAGTTCAAT
1 ATTATGTAAGTTCAAT
*
8245253 ATTATGTAAGTT-ATGTAGA
1 ATTATGTAAGTTCA---A-T
8245272 ATTATGTAAGTTCCAAT
1 ATTATGTAAGTT-CAAT
8245289 ATTATGTAAG
1 ATTATGTAAG
8245299 CTATGTATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
15 1 0.03
16 12 0.32
17 10 0.26
18 2 0.05
19 12 0.32
21 1 0.03
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (16 bp):
ATTATGTAAGTTCAAT
Found at i:8245378 original size:34 final size:36
Alignment explanation
Indices: 8245340--8245425 Score: 124
Period size: 36 Copynumber: 2.4 Consensus size: 36
8245330 ATTGTATAAG
*
8245340 TTATGT-AGATTATGTA-AGTTATGTAAGTT-CAATA
1 TTATGTAAG-TTATGTAGAATTATGTAAGTTCCAATA
8245374 TTATGTAAGTTATGTAGAATTATGTAAGTTCCAATA
1 TTATGTAAGTTATGTAGAATTATGTAAGTTCCAATA
*
8245410 TTATGTAAGCTATGTA
1 TTATGTAAGTTATGTA
8245426 TTATGAAATT
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
34 13 0.28
35 14 0.30
36 20 0.43
ACGTcount: A:0.35, C:0.05, G:0.17, T:0.43
Consensus pattern (36 bp):
TTATGTAAGTTATGTAGAATTATGTAAGTTCCAATA
Found at i:8245379 original size:16 final size:16
Alignment explanation
Indices: 8245358--8245418 Score: 61
Period size: 19 Copynumber: 3.6 Consensus size: 16
8245348 ATTATGTAAG
8245358 TTATGTAAGTTCAATA
1 TTATGTAAGTTCAATA
*
8245374 TTATGTAAGTT-ATGTAGAA
1 TTATGTAAGTTCA---A-TA
8245393 TTATGTAAGTTCCAATA
1 TTATGTAAGTT-CAATA
8245410 TTATGTAAG
1 TTATGTAAG
8245419 CTATGTATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
15 1 0.03
16 11 0.30
17 10 0.27
18 2 0.05
19 12 0.32
21 1 0.03
ACGTcount: A:0.36, C:0.05, G:0.16, T:0.43
Consensus pattern (16 bp):
TTATGTAAGTTCAATA
Found at i:8245632 original size:25 final size:25
Alignment explanation
Indices: 8245598--8245682 Score: 73
Period size: 25 Copynumber: 3.3 Consensus size: 25
8245588 ATGTAGGTTA
8245598 TGAAAATTATGTAAGTTATGTACTG
1 TGAAAATTATGTAAGTTATGTACTG
* * *
8245623 TGAAAATTATTATTAAAGTTAAGTA-AG
1 TGAAAATTA-T-GT-AAGTTATGTACTG
* * *
8245650 TTCAATATTATGTAAGTTATGTACTA
1 -TGAAAATTATGTAAGTTATGTACTG
8245676 TGAAAAT
1 TGAAAAT
8245683 CTAAAAAAGT
Statistics
Matches: 44, Mismatches: 11, Indels: 10
0.68 0.17 0.15
Matches are distributed among these distances:
25 23 0.52
26 2 0.05
27 3 0.07
28 16 0.36
ACGTcount: A:0.41, C:0.04, G:0.15, T:0.40
Consensus pattern (25 bp):
TGAAAATTATGTAAGTTATGTACTG
Found at i:8246954 original size:39 final size:39
Alignment explanation
Indices: 8246911--8246989 Score: 115
Period size: 39 Copynumber: 2.0 Consensus size: 39
8246901 CTAAAGAAAT
8246911 TGTGCCAAAAC-ATAATACCAAAAAAAGAATACCAAGTAA
1 TGTGCCAAAACAATAATACC-AAAAAAGAATACCAAGTAA
** *
8246950 TGTGCCAAAACAATCCTACCAAAACAGAATACCAAGTAA
1 TGTGCCAAAACAATAATACCAAAAAAGAATACCAAGTAA
8246989 T
1 T
8246990 CTACAAAGTC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
39 30 0.83
40 6 0.17
ACGTcount: A:0.52, C:0.22, G:0.10, T:0.16
Consensus pattern (39 bp):
TGTGCCAAAACAATAATACCAAAAAAGAATACCAAGTAA
Found at i:8248330 original size:12 final size:12
Alignment explanation
Indices: 8248313--8248339 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
8248303 AAATTATGAC
8248313 ATTATTAATATT
1 ATTATTAATATT
8248325 ATTATTAATATT
1 ATTATTAATATT
8248337 ATT
1 ATT
8248340 TAAAAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
ATTATTAATATT
Found at i:8248887 original size:13 final size:13
Alignment explanation
Indices: 8248869--8248931 Score: 54
Period size: 13 Copynumber: 4.5 Consensus size: 13
8248859 GACTAAAGCG
*
8248869 ACCCAAACCCCGA
1 ACCCAAACCCCAA
8248882 ACCCAAACCCCAA
1 ACCCAAACCCCAA
*
8248895 ACCTTAAACCCCCAA
1 ACC-CAAA-CCCCAA
*
8248910 ACACCCAACCCCTAA
1 AC-CCAAACCCC-AA
*
8248925 GCCCAAA
1 ACCCAAA
8248932 ATACTAAACC
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
13 15 0.38
14 11 0.28
15 13 0.32
16 1 0.03
ACGTcount: A:0.41, C:0.51, G:0.03, T:0.05
Consensus pattern (13 bp):
ACCCAAACCCCAA
Found at i:8249531 original size:114 final size:114
Alignment explanation
Indices: 8249217--8249977 Score: 762
Period size: 114 Copynumber: 6.7 Consensus size: 114
8249207 AAACCTACAT
* * * *
8249217 GCGTTTTTACATAAGCGCCACTAATTCTAATATACATCAAGACCAAACGCTGCGTTTTGGTTAAG
1 GCGTTTTTCCATAACCGCCACTAATTCTAATATACATCAAGACAAAACGATGCGTTTTGGTTAAG
* * ** * * * *
8249282 ATATTTTGCGGCGATTCTTACAAAGCATCTCTAATACTCTGCTTTAGTG
66 ATATTTTGCGGCGTTTCTTACAAAACGCCGCTAATACTATGCTATAGCG
* * * * *
8249331 GCCTTTTTCCGTAA-CGCCACTAATTCTTATATACCTCAAGATAAAACGATGCGTTTTGGTTAAG
1 GCGTTTTTCCATAACCGCCACTAATTCTAATATACATCAAGACAAAACGATGCGTTTTGGTTAAG
* * *
8249395 ATATTTTACGGCATTT-TATACAAAACGCCGCTAATACTGTGCTATAGCG
66 ATATTTTGCGGCGTTTCT-TACAAAACGCCGCTAATACTATGCTATAGCG
* * * * *
8249444 GCGTTTTTCCACAATCGCCACTAATTCTAATATACATTAAGACCAAAA-GCTGCATTTTGGTTAA
1 GCGTTTTTCCATAACCGCCACTAATTCTAATATACATCAAGA-CAAAACGATGCGTTTTGGTTAA
* * * * *
8249508 GATAATTTGCGGCGTTTCTTACAAAGCGCCTCTAATACTATCCTTTAGCG
65 GATATTTTGCGGCGTTTCTTACAAAACGCCGCTAATACTATGCTATAGCG
* * *
8249558 GCGTTTTTCCGTAACCGCCACTAATTCTTATATACCTCAAGACAAAACGATGCGTTTTGGTTAAG
1 GCGTTTTTCCATAACCGCCACTAATTCTAATATACATCAAGACAAAACGATGCGTTTTGGTTAAG
* * * *
8249623 ATATTTTGCGGCGTTTCGTATAAAATGCCGCTAATACTGTGCTATAGCG
66 ATATTTTGCGGCGTTTCTTACAAAACGCCGCTAATACTATGCTATAGCG
* ** * * * *
8249672 GCGTTTTTCCACAAGTGCCACTAATTCTATTATACATTAAGACAAAACGCTACGTTTTGGTTAAG
1 GCGTTTTTCCATAACCGCCACTAATTCTAATATACATCAAGACAAAACGATGCGTTTTGGTTAAG
* * * * * * * *
8249737 ATAATTAGCAGCGTTTCTTACAAAGCCCCTCTAATACTCT-CATTTAGCG
66 ATATTTTGCGGCGTTTCTTACAAAACGCCGCTAATACTATGC-TATAGCG
* * * * *
8249786 GCGTTTTTCCGTAACCGCCACTAATTCTTATATACCTCAAGACCAAACGATGCATTTTGGTTAAG
1 GCGTTTTTCCATAACCGCCACTAATTCTAATATACATCAAGACAAAACGATGCGTTTTGGTTAAG
* * * *
8249851 ATATTTTGAGGGCGTTTAC-TAAAAAACGCCGCTAATAATATACTATAGCG
66 ATATTTTG-CGGCGTTT-CTTACAAAACGCCGCTAATACTATGCTATAGCG
* * * * * * ** * *
8249901 GCGTTTAT-AATAAACGCCACCAAGTCTAATATACCTCGGGA-ACAAACGATGTGTTTTGGCTAA
1 GCGTTTTTCCATAACCGCCACTAATTCTAATATACATCAAGACA-AAACGATGCGTTTTGGTTAA
* *
8249964 CATTTTTTGCGGCG
65 GATATTTTGCGGCG
8249978 CTTACAAATA
Statistics
Matches: 525, Mismatches: 112, Indels: 21
0.80 0.17 0.03
Matches are distributed among these distances:
112 1 0.00
113 103 0.20
114 379 0.72
115 40 0.08
116 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.33
Consensus pattern (114 bp):
GCGTTTTTCCATAACCGCCACTAATTCTAATATACATCAAGACAAAACGATGCGTTTTGGTTAAG
ATATTTTGCGGCGTTTCTTACAAAACGCCGCTAATACTATGCTATAGCG
Found at i:8249680 original size:228 final size:227
Alignment explanation
Indices: 8249217--8249906 Score: 1010
Period size: 228 Copynumber: 3.0 Consensus size: 227
8249207 AAACCTACAT
* * * * *
8249217 GCGTTTTTACATAAGCGCCACTAATTCTAATATACATCAAGACCAAACGCTGCGTTTTGGTTAAG
1 GCGTTTTTCCACAATCGCCACTAATTCTAATATACATTAAGACCAAAAGCTGCGTTTTGGTTAAG
* * * * * *
8249282 ATATTTTGCGGCGATTCTTACAAAGCATCTCTAATACTCTGCTTTAGTGGCCTTTTTCCGTAA-C
66 ATAATTTGCGGCGTTTCTTACAAAGCACCTCTAATACTCTCCTTTAGCGGCGTTTTTCCGTAACC
* * *
8249346 GCCACTAATTCTTATATACCTCAAGATAAAACGATGCGTTTTGGTTAAGATATTTTACGGCATTT
131 GCCACTAATTCTTATATACCTCAAGACAAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTTT
8249411 -TATACAAAACGCCGCTAATACTGTGCTATAGCG
196 CTA-A-AAAACGCCGCTAATACTGTGCTATAGCG
*
8249444 GCGTTTTTCCACAATCGCCACTAATTCTAATATACATTAAGACCAAAAGCTGCATTTTGGTTAAG
1 GCGTTTTTCCACAATCGCCACTAATTCTAATATACATTAAGACCAAAAGCTGCGTTTTGGTTAAG
* *
8249509 ATAATTTGCGGCGTTTCTTACAAAGCGCCTCTAATACTATCCTTTAGCGGCGTTTTTCCGTAACC
66 ATAATTTGCGGCGTTTCTTACAAAGCACCTCTAATACTCTCCTTTAGCGGCGTTTTTCCGTAACC
8249574 GCCACTAATTCTTATATACCTCAAGACAAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTTT
131 GCCACTAATTCTTATATACCTCAAGACAAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTTT
* *
8249639 CGTATAAAATGCCGCTAATACTGTGCTATAGCG
196 C-TAAAAAACGCCGCTAATACTGTGCTATAGCG
* *
8249672 GCGTTTTTCCACAAGT-GCCACTAATTCTATTATACATTAAGA-CAAAACGCTACGTTTTGGTTA
1 GCGTTTTTCCACAA-TCGCCACTAATTCTAATATACATTAAGACCAAAA-GCTGCGTTTTGGTTA
* * * *
8249735 AGATAATTAGCAGCGTTTCTTACAAAGCCCCTCTAATACTCTCATTTAGCGGCGTTTTTCCGTAA
64 AGATAATTTGCGGCGTTTCTTACAAAGCACCTCTAATACTCTCCTTTAGCGGCGTTTTTCCGTAA
* * *
8249800 CCGCCACTAATTCTTATATACCTCAAGACCAAACGATGCATTTTGGTTAAGATATTTTGAGGGCG
129 CCGCCACTAATTCTTATATACCTCAAGACAAAACGATGCGTTTTGGTTAAGATATTTTG-CGGCG
* * *
8249865 TTTACTAAAAAACGCCGCTAATAATATACTATAGCG
193 TTT-CTAAAAAACGCCGCTAATACTGTGCTATAGCG
8249901 GCGTTT
1 GCGTTT
8249907 ATAATAAACG
Statistics
Matches: 421, Mismatches: 35, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
227 119 0.28
228 259 0.62
229 40 0.10
230 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (227 bp):
GCGTTTTTCCACAATCGCCACTAATTCTAATATACATTAAGACCAAAAGCTGCGTTTTGGTTAAG
ATAATTTGCGGCGTTTCTTACAAAGCACCTCTAATACTCTCCTTTAGCGGCGTTTTTCCGTAACC
GCCACTAATTCTTATATACCTCAAGACAAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTTT
CTAAAAAACGCCGCTAATACTGTGCTATAGCG
Found at i:8249842 original size:342 final size:340
Alignment explanation
Indices: 8249217--8249977 Score: 847
Period size: 342 Copynumber: 2.2 Consensus size: 340
8249207 AAACCTACAT
* * * *
8249217 GCGTTTTTACATAAGCGCCACTAATTCTAATATACATCAAGACCAAACGCTGCGTTTTGGTTAAG
1 GCGTTTTT-CATAAACGCCACTAATTCTAATATACCTCAAGACAAAACGATGCGTTTTGGTTAAG
* * * **
8249282 ATATTTTGCGGCGATTCTTACAAAGCATCTCTAATACTCTGCTTTAGTGGCCTTTTTCCGTAACG
65 ATATTTTGCGGCGATTCTTACAAAGCA-CGCTAATACTCTGCTATAGCGGCCTTTTTCCACAACG
* * * * *
8249347 CCACTAATTCTTATATACCTCAAGATAAAACGATGCGTTTTGGTTAAGATATTTTACGGCATTTT
129 CCACTAATTCTTATATACATCAAGACAAAACGATACGTTTTGGTTAAGATATATTACAGCATTTT
* * *
8249412 ATACAAAACGCCGCTAATACTGTGCTATAGCGGCGTTTTTCCACAATCGCCACTAATTCTAATAT
194 ATACAAAACCCCGCTAATACTCTGCTATAGCGGCGTTTTTCCACAACCGCCACTAATTCTAATAT
* * * * *
8249477 ACATTAAGACCAAAAGCTGCATTTTGGTTAAGATAATTTG-CGGCGTTT-CTTACAAAGCGCCTC
259 ACATCAAGACCAAAAGATGCATTTTGGTTAAGATAATTTGACGGCGTTTAC-TAAAAAACGCCGC
* * *
8249540 TAATACTATCCTTTAGCG
323 TAATAATATACTATAGCG
* * *
8249558 GCGTTTTTCCGTAACCGCCACTAATTCTTATATACCTCAAGACAAAACGATGCGTTTTGGTTAAG
1 GCGTTTTT-CATAAACGCCACTAATTCTAATATACCTCAAGACAAAACGATGCGTTTTGGTTAAG
* * *
8249623 ATATTTTGCGGCGTTTCGTATA-AAATGC-CGCTAATACTGTGCTATAGCGGCGTTTTTCCACAA
65 ATATTTTGCGGCGATTC-T-TACAAA-GCACGCTAATACTCTGCTATAGCGGCCTTTTTCCACAA
* * *
8249686 GTGCCACTAATTC-TATTATACATTAAGACAAAACGCTACGTTTTGGTTAAGATA-ATTAGCAGC
127 -CGCCACTAATTCTTA-TATACATCAAGACAAAACGATACGTTTTGGTTAAGATATATTA-CAGC
* * * * **
8249749 GTTTCT-TACAAAGCCCCTCTAATACTCT-CATTTAGCGGCGTTTTTCCGTAACCGCCACTAATT
189 ATTT-TATACAAAACCCCGCTAATACTCTGC-TATAGCGGCGTTTTTCCACAACCGCCACTAATT
* * * * *
8249812 CTTATATACCTCAAGACCAAACGATGCATTTTGGTTAAGATATTTTGAGGGCGTTTACTAAAAAA
252 CTAATATACATCAAGACCAAAAGATGCATTTTGGTTAAGATAATTTGACGGCGTTTACTAAAAAA
8249877 CGCCGCTAATAATATACTATAGCG
317 CGCCGCTAATAATATACTATAGCG
* * * * ** * * *
8249901 GCGTTTATAATAAACGCCACCAAGTCTAATATACCTCGGGA-ACAAACGATGTGTTTTGGCTAAC
1 GCGTTTTTCATAAACGCCACTAATTCTAATATACCTCAAGACA-AAACGATGCGTTTTGGTTAAG
*
8249965 ATTTTTTGCGGCG
65 ATATTTTGCGGCG
8249978 CTTACAAATA
Statistics
Matches: 351, Mismatches: 58, Indels: 21
0.82 0.13 0.05
Matches are distributed among these distances:
341 109 0.31
342 197 0.56
343 44 0.13
344 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.33
Consensus pattern (340 bp):
GCGTTTTTCATAAACGCCACTAATTCTAATATACCTCAAGACAAAACGATGCGTTTTGGTTAAGA
TATTTTGCGGCGATTCTTACAAAGCACGCTAATACTCTGCTATAGCGGCCTTTTTCCACAACGCC
ACTAATTCTTATATACATCAAGACAAAACGATACGTTTTGGTTAAGATATATTACAGCATTTTAT
ACAAAACCCCGCTAATACTCTGCTATAGCGGCGTTTTTCCACAACCGCCACTAATTCTAATATAC
ATCAAGACCAAAAGATGCATTTTGGTTAAGATAATTTGACGGCGTTTACTAAAAAACGCCGCTAA
TAATATACTATAGCG
Found at i:8260400 original size:40 final size:40
Alignment explanation
Indices: 8260315--8260411 Score: 126
Period size: 40 Copynumber: 2.5 Consensus size: 40
8260305 TAAGATTTTC
* **
8260315 CCGAAGAGCATTCGTGCTAGTGATATATCCGGGGTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAACCT
*
8260355 CCGAAGAGCATTCGTGCTAGTGATATATCTGGGCTAAACCT
1 CCGAAGAGCATTCGTGCTAGTGATATATCCGGGCT-AACCT
*
8260396 -CGAAG-GCATTCATGCT
1 CCGAAGAGCATTCGTGCT
8260412 GGAATTATGA
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
39 10 0.20
40 38 0.75
41 3 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAACCT
Found at i:8260542 original size:64 final size:63
Alignment explanation
Indices: 8260437--8260563 Score: 236
Period size: 64 Copynumber: 2.0 Consensus size: 63
8260427 TGTGTGTGCA
8260437 AACAGTACCCAAACCTCTTTTTCGGTAAGATTTTCGAGGACGAAAATCCCTAAGGGGGGGAGAG
1 AACAGTACCCAAACCTCTTTTTCGGTAAGATTTTCGAGGACGAAAATCCCTAA-GGGGGGAGAG
*
8260501 AACAGTACCCAAACCTCTTTTTCGGTAAGATTTTCGGGGACGAAAATCCCTAAGGGGGGAGAG
1 AACAGTACCCAAACCTCTTTTTCGGTAAGATTTTCGAGGACGAAAATCCCTAAGGGGGGAGAG
8260564 TTGTAACAGC
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
63 10 0.16
64 52 0.84
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (63 bp):
AACAGTACCCAAACCTCTTTTTCGGTAAGATTTTCGAGGACGAAAATCCCTAAGGGGGGAGAG
Found at i:8266372 original size:31 final size:31
Alignment explanation
Indices: 8266337--8266398 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
8266327 GTTTGAAATA
8266337 TTTGATGAGTCAAAAAGACTTGAATTTGCGG
1 TTTGATGAGTCAAAAAGACTTGAATTTGCGG
8266368 TTTGATGAGTCAAAAAGACTTGAATTTGCGG
1 TTTGATGAGTCAAAAAGACTTGAATTTGCGG
8266399 CAACAAAGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.10, G:0.26, T:0.32
Consensus pattern (31 bp):
TTTGATGAGTCAAAAAGACTTGAATTTGCGG
Found at i:8274096 original size:27 final size:27
Alignment explanation
Indices: 8274066--8274186 Score: 154
Period size: 27 Copynumber: 4.5 Consensus size: 27
8274056 ATTACCAAAG
* * *
8274066 TACCCCCGATTTACATAATTATCGTTT
1 TACCCTCGATTTATAGAATTATCGTTT
*
8274093 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTATCGTTT
*
8274120 TACCCTCGATTTATAGAATTA-CTATTT
1 TACCCTCGATTTATAGAATTATC-GTTT
* *
8274147 TACCCTTGATTTATAGAATTATTGTTT
1 TACCCTCGATTTATAGAATTATCGTTT
*
8274174 TACCCTTGATTTA
1 TACCCTCGATTTA
8274187 CAAAATTACT
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
26 1 0.01
27 83 0.99
ACGTcount: A:0.26, C:0.20, G:0.09, T:0.45
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTATCGTTT
Found at i:8274113 original size:54 final size:54
Alignment explanation
Indices: 8274039--8274167 Score: 134
Period size: 54 Copynumber: 2.4 Consensus size: 54
8274029 ATTATTGAAA
* * * * *
8274039 TACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTACATAATTA-TCGTTT
1 TACCCTCGATTTATAGAATTACCAAAGTACCCCCGATTTACAGAATTACT-ATTT
**** * *
8274093 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCAAAGTACCCCCGATTTACAGAATTACTATTT
*
8274147 TACCCTTGATTTATAGAATTA
1 TACCCTCGATTTATAGAATTA
8274168 TTGTTTTACC
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
54 61 0.98
55 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACCAAAGTACCCCCGATTTACAGAATTACTATTT
Found at i:8274205 original size:54 final size:54
Alignment explanation
Indices: 8274093--8274223 Score: 154
Period size: 54 Copynumber: 2.4 Consensus size: 54
8274083 ATTATCGTTT
* * * ***
8274093 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
** *
8274147 TACCCTTGATTTATAGAATTATTGTTTTACCCTTGATTTACAAAATTACTAAAA
1 TACCCTTGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
* * *
8274201 TACCCTTGGTTTACAAAATTACC
1 TACCCTTGATTTATAGAATTACC
8274224 AAAATACCCT
Statistics
Matches: 63, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 63 1.00
ACGTcount: A:0.31, C:0.19, G:0.08, T:0.41
Consensus pattern (54 bp):
TACCCTTGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
Found at i:8274439 original size:27 final size:27
Alignment explanation
Indices: 8274174--8274443 Score: 219
Period size: 27 Copynumber: 10.0 Consensus size: 27
8274164 ATTATTGTTT
* ** *
8274174 TACCCTTGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTGTAAAATTACCAAAA
**
8274201 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTGTAAAATTACCAAAA
8274228 TACCC-TGGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTGTAAAATTACCAAAA
8274254 TACCAC-TGGTTTGTAAAATTACCAAAA
1 TACC-CTTGGTTTGTAAAATTACCAAAA
* *
8274281 TACCAC-TGGTTTGTGAAATTACCGAAA
1 TACC-CTTGGTTTGTAAAATTACCAAAA
** *
8274308 TACCCTTAATTTGTAAAATTACAAAAA
1 TACCCTTGGTTTGTAAAATTACCAAAA
** **
8274335 TACCAC-TAATTTACAAAATTA-CATAAA
1 TACC-CTTGGTTTGTAAAATTACCA-AAA
* * *
8274362 TACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTTG-GTTTGT-AAAATTACCA-AAA
* ** *
8274391 TACCATTGGTTTACAAAATTACTAAAA
1 TACCCTTGGTTTGTAAAATTACCAAAA
* *
8274418 TACCCTTGGTTTGTAGATTTACCAAA
1 TACCCTTGGTTTGTAAAATTACCAAA
8274444 GCACCCTTAT
Statistics
Matches: 205, Mismatches: 30, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
26 26 0.13
27 152 0.74
28 9 0.04
29 18 0.09
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
TACCCTTGGTTTGTAAAATTACCAAAA
Found at i:8274450 original size:137 final size:134
Alignment explanation
Indices: 8274188--8274452 Score: 299
Period size: 137 Copynumber: 2.0 Consensus size: 134
8274178 CTTGATTTAC
* ** * *
8274188 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTGGTTTGTAAAATTACCAAA
1 AAAATTACAAAAATACCCTTAATTTACAAAATTACCAAAATACCCTGCTTTCTAAAATTACCAAA
** *
8274253 ATACCACTGGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTTAAT
66 ATACCACTGGTTTACAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAACACCCTTAAT
8274318 TTGT
131 TTGT
8274322 AAAATTACAAAAATACCAC-TAATTTACAAAATTA-CATAAATACCCTTGACTTTCTAAAAATTA
1 AAAATTACAAAAATACC-CTTAATTTACAAAATTACCA-AAATACCC-TG-CTTTCT-AAAATTA
* * * *
8274385 -TAGAAATACCATTGGTTTACAAAATTACTAAAATACC-CTTGGTTTGT-AGATTTACC-AAAGC
61 CCA-AAATACCACTGGTTTACAAAATTACCAAAATACCAC-TGGTTTGTGA-AATTACCGAAA-C
8274446 ACCCTTA
122 ACCCTTA
8274453 TAGGATGAAA
Statistics
Matches: 110, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
133 2 0.02
134 37 0.34
135 3 0.03
136 10 0.09
137 58 0.53
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (134 bp):
AAAATTACAAAAATACCCTTAATTTACAAAATTACCAAAATACCCTGCTTTCTAAAATTACCAAA
ATACCACTGGTTTACAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAACACCCTTAAT
TTGT
Found at i:8274506 original size:27 final size:27
Alignment explanation
Indices: 8274474--8274525 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
8274464 GACTAAAATA
8274474 CCCCTAATA-GGTAAAAAGACCGTAAAG
1 CCCCT-ATAGGGTAAAAAGACCGTAAAG
**
8274501 CCCCTATAGGGTAAAGTGACCGTAA
1 CCCCTATAGGGTAAAAAGACCGTAA
8274526 TACCCTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (27 bp):
CCCCTATAGGGTAAAAAGACCGTAAAG
Found at i:8275738 original size:25 final size:25
Alignment explanation
Indices: 8275706--8275753 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
8275696 TTATAACATG
*
8275706 AAAATGACCATTTTACCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
*
8275731 AAAATGACTATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
8275754 GTTTATGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:8275856 original size:20 final size:20
Alignment explanation
Indices: 8275790--8275856 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
8275780 ATTTTGATAA
*
8275790 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
8275810 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
8275830 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
8275850 ACGTGAT
1 ACATGAT
8275857 GTAATCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:8275936 original size:23 final size:23
Alignment explanation
Indices: 8275907--8276047 Score: 230
Period size: 23 Copynumber: 6.1 Consensus size: 23
8275897 AGGAAGTGAA
8275907 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
8275930 GAAGGGCTTGTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
8275953 AAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
8275975 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
8275998 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
8276021 AAGAGGGCTTTTGCCCCAGTTGTT
1 AA-AGGGCTTATGCCCCAGTTATT
8276045 AAA
1 AAA
8276048 AGAGGCTAGG
Statistics
Matches: 110, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
22 22 0.20
23 67 0.61
24 21 0.19
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:8275980 original size:45 final size:46
Alignment explanation
Indices: 8275907--8276047 Score: 230
Period size: 45 Copynumber: 3.1 Consensus size: 46
8275897 AGGAAGTGAA
* *
8275907 AAAGGGCTTATGCCCCAGTTATTGAAGGGCTTGTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
8275953 AAAGGGCTTATG-CCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
* *
8275998 AAAGGGCTTATGCCCCAGTTATTAAGAGGGCTTTTGCCCCAGTTGTT
1 AAAGGGCTTATGCCCCAGTTATTAA-AGGGCTTATGCCCCAGTTATT
8276045 AAA
1 AAA
8276048 AGAGGCTAGG
Statistics
Matches: 89, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
45 43 0.48
46 24 0.27
47 22 0.25
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:8276016 original size:68 final size:70
Alignment explanation
Indices: 8275907--8276047 Score: 232
Period size: 68 Copynumber: 2.0 Consensus size: 70
8275897 AGGAAGTGAA
* *
8275907 AAAGGGCTTATGCCCCAGTTATTGAAGGGCTTGTGCCCCAGTTATTAA-AGGGCTTATG-CCCAG
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAGAGGGCTTATGCCCCAG
8275970 TTATT
66 TTATT
*
8275975 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAGAGGGCTTTTGCCCCAG
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAGAGGGCTTATGCCCCAG
*
8276040 TTGTT
66 TTATT
8276045 AAA
1 AAA
8276048 AGAGGCTAGG
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
68 46 0.69
69 9 0.13
70 12 0.18
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (70 bp):
AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAGAGGGCTTATGCCCCAG
TTATT
Found at i:8276297 original size:31 final size:31
Alignment explanation
Indices: 8276262--8276325 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
8276252 CGTTTACAGT
*
8276262 AAAGGCTTCGGCCCAATAATATGAAATATGA
1 AAAGGCTTCGGCCCAATAATATGAAAAATGA
* **
8276293 AAAGGCTTCGGCCCAGTGTTATGAAAAATGA
1 AAAGGCTTCGGCCCAATAATATGAAAAATGA
8276324 AA
1 AA
8276326 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATAATATGAAAAATGA
Found at i:8280809 original size:31 final size:31
Alignment explanation
Indices: 8280771--8280834 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
8280761 GTAGAACTCT
8280771 TAAATAAAAAGATTGACGGTTTATGTGGTTC
1 TAAATAAAAAGATTGACGGTTTATGTGGTTC
*
8280802 TAAATAAAAAGATTGACGGTTTGTGTGGTTC
1 TAAATAAAAAGATTGACGGTTTATGTGGTTC
8280833 TA
1 TA
8280835 CTCAGGTACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.36
Consensus pattern (31 bp):
TAAATAAAAAGATTGACGGTTTATGTGGTTC
Found at i:8296797 original size:93 final size:92
Alignment explanation
Indices: 8296668--8296838 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 92
8296658 CGCCCATAAG
* ***
8296668 CGAACTCGGACTCAACTCAATGAGCCTGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCCTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
8296733 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTC-GATGCCTAGTTACATCTCA
*
8296761 CGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCCT-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
8296825 AACGAGTTCGATGC
65 AACGAGTTCGATGC
8296839 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
92 6 0.08
93 66 0.92
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCCTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGATGCCTAGTTACATCTCA
Found at i:8296829 original size:46 final size:46
Alignment explanation
Indices: 8296661--8296834 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
8296651 TGTAACCCGC
* * ***
8296661 CCATAAGCGAACTCGGACTCAACTCAATGAG-CCTGGGTGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
8296707 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
8296757 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
8296800 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCG
8296835 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 58 0.55
47 30 0.28
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:8300209 original size:46 final size:46
Alignment explanation
Indices: 8300142--8301190 Score: 1921
Period size: 46 Copynumber: 22.8 Consensus size: 46
8300132 TGTAACCCGC
* * *
8300142 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
8300188 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8300234 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8300280 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8300326 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8300372 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8300418 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8300464 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8300510 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8300556 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8300602 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8300648 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8300694 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8300740 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8300786 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8300832 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8300878 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8300924 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8300970 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
8301016 CCAGAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
8301062 CCAGAAGTGAACTCGGACTCAACTCAACGAG-TCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
8301111 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8301154 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
8301191 TGCTCAACCA
Statistics
Matches: 979, Mismatches: 13, Indels: 22
0.97 0.01 0.02
Matches are distributed among these distances:
42 2 0.00
43 4 0.00
44 1 0.00
45 9 0.01
46 950 0.97
47 6 0.01
48 1 0.00
49 4 0.00
50 2 0.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:8308670 original size:46 final size:46
Alignment explanation
Indices: 8308607--8309463 Score: 1610
Period size: 46 Copynumber: 18.6 Consensus size: 46
8308597 ACCCGCCCAT
* * * * * * *
8308607 AAGTGAACTCAGACTCAACTCAACGGGCTCGGGCGTTCACATCCAT
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
*
8308653 AAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCTGCATCCAG
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACAT-TC-GCATCCAG
8308699 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
8308745 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
8308791 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
8308837 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
8308883 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
8308929 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
8308975 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
8309021 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
8309067 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
8309113 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
8309159 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
8309205 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
8309251 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
8309297 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
8309343 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
8309389 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
8309435 AAGTGAACTCGGACTCAACTCAACGAGTT
1 AAGTGAACTCGGACTCAACTCAACGAGTT
8309464 TGGATGCTCA
Statistics
Matches: 799, Mismatches: 8, Indels: 8
0.98 0.01 0.01
Matches are distributed among these distances:
44 1 0.00
45 1 0.00
46 794 0.99
47 1 0.00
48 2 0.00
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.20
Consensus pattern (46 bp):
AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAG
Found at i:8309924 original size:30 final size:30
Alignment explanation
Indices: 8309890--8309949 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
8309880 ATTTAATACG
*
8309890 AACTTTAATAAAATTACACTTTTGCCCCTA
1 AACTTTAACAAAATTACACTTTTGCCCCTA
** *
8309920 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAACAAAATTACACTTTTGCCCCTA
8309950 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.05, T:0.38
Consensus pattern (30 bp):
AACTTTAACAAAATTACACTTTTGCCCCTA
Found at i:8311153 original size:26 final size:27
Alignment explanation
Indices: 8311073--8311182 Score: 125
Period size: 27 Copynumber: 4.1 Consensus size: 27
8311063 GGGCCGAAAT
*
8311073 AATGACCAAAATACCCTCATAGAGTAA
1 AATGACCAAAATACCCTCATAGGGTAA
* *
8311100 AATGACCGAAATACCCTCATAGGATAA
1 AATGACCAAAATACCCTCATAGGGTAA
*
8311127 AATGATCAAAATACCC-CATAGGGTAA
1 AATGACCAAAATACCCTCATAGGGTAA
* * * *
8311153 AATCAACGAAATACCC-CTATAAGGTAA
1 AATGACCAAAATACCCTC-ATAGGGTAA
8311180 AAT
1 AAT
8311183 AACTGTAATA
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 23 0.32
27 49 0.68
ACGTcount: A:0.47, C:0.21, G:0.13, T:0.19
Consensus pattern (27 bp):
AATGACCAAAATACCCTCATAGGGTAA
Found at i:8311192 original size:27 final size:27
Alignment explanation
Indices: 8311136--8311236 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
8311126 AAATGATCAA
* *
8311136 AATACCCC-ATAGGGTAAAATCAAC-GA
1 AATACCCCTATAAGGTAAAAT-AACTGT
8311162 AATACCCCTATAAGGTAAAATAACTGT
1 AATACCCCTATAAGGTAAAATAACTGT
* * *
8311189 AATACCCCTGTAGGGTAAAATGACTGT
1 AATACCCCTATAAGGTAAAATAACTGT
*
8311216 AATACCCCTGTAAGGTAAAAT
1 AATACCCCTATAAGGTAAAAT
8311237 GACTTATTTG
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
26 11 0.16
27 56 0.84
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.23
Consensus pattern (27 bp):
AATACCCCTATAAGGTAAAATAACTGT
Found at i:8311237 original size:27 final size:27
Alignment explanation
Indices: 8311162--8311240 Score: 131
Period size: 27 Copynumber: 2.9 Consensus size: 27
8311152 AAATCAACGA
* *
8311162 AATACCCCTATAAGGTAAAATAACTGT
1 AATACCCCTGTAAGGTAAAATGACTGT
*
8311189 AATACCCCTGTAGGGTAAAATGACTGT
1 AATACCCCTGTAAGGTAAAATGACTGT
8311216 AATACCCCTGTAAGGTAAAATGACT
1 AATACCCCTGTAAGGTAAAATGACT
8311241 TATTTGCCCT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.25
Consensus pattern (27 bp):
AATACCCCTGTAAGGTAAAATGACTGT
Found at i:8314513 original size:27 final size:27
Alignment explanation
Indices: 8314477--8314592 Score: 121
Period size: 27 Copynumber: 4.3 Consensus size: 27
8314467 GGTCGAAATG
8314477 ATGACTGAAATACCCTC-ATAGGGTAAA
1 ATGACTGAAATACCC-CGATAGGGTAAA
* *
8314504 ATGACCGAAATACCCCGATAAGGTAAA
1 ATGACTGAAATACCCCGATAGGGTAAA
*
8314531 ATGACTGTAATACCCCTG-TAGGGTAAA
1 ATGACTGAAATACCCC-GATAGGGTAAA
* * *
8314558 ATAACTGTAATACCCCTG-TAAGGTAAA
1 ATGACTGAAATACCCC-GATAGGGTAAA
*
8314585 GTGACTGA
1 ATGACTGA
8314593 TTTTCCCTAT
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
26 1 0.01
27 75 0.97
28 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.22
Consensus pattern (27 bp):
ATGACTGAAATACCCCGATAGGGTAAA
Found at i:8314557 original size:54 final size:54
Alignment explanation
Indices: 8314477--8314592 Score: 146
Period size: 54 Copynumber: 2.1 Consensus size: 54
8314467 GGTCGAAATG
*
8314477 ATGACTGAAATACCCTCATAGGGTAAAATGACCGAAATACCCC-GATAAGGTAAA
1 ATGACTGAAATACCCTCATAGGGTAAAATAACCGAAATACCCCTG-TAAGGTAAA
* * * *
8314531 ATGACTGTAATACCC-CTGTAGGGTAAAATAACTGTAATACCCCTGTAAGGTAAA
1 ATGACTGAAATACCCTC-ATAGGGTAAAATAACCGAAATACCCCTGTAAGGTAAA
*
8314585 GTGACTGA
1 ATGACTGA
8314593 TTTTCCCTAT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
53 1 0.02
54 51 0.96
55 1 0.02
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.22
Consensus pattern (54 bp):
ATGACTGAAATACCCTCATAGGGTAAAATAACCGAAATACCCCTGTAAGGTAAA
Found at i:8319964 original size:39 final size:39
Alignment explanation
Indices: 8319921--8320103 Score: 233
Period size: 39 Copynumber: 4.7 Consensus size: 39
8319911 GCACGTGGCT
* *
8319921 TGCGGACTTCAAGTCCGAATATATTTCCAGCATATAGCC
1 TGCGGACCTCATGTCCGAATATATTTCCAGCATATAGCC
* * *
8319960 TGCGGACCTCATGTCTGGATATATTCCCAGCATATAGCC
1 TGCGGACCTCATGTCCGAATATATTTCCAGCATATAGCC
* * * * *
8319999 TGTGGACTTCATGTTCGGATATATTTCCAGTATATAGCC
1 TGCGGACCTCATGTCCGAATATATTTCCAGCATATAGCC
*
8320038 TACGGACCTCATGTCCGAATATATTTCCAGCATATAGCC
1 TGCGGACCTCATGTCCGAATATATTTCCAGCATATAGCC
**
8320077 TGTAGACCTCATGTCC-AGATATATTTC
1 TGCGGACCTCATGTCCGA-ATATATTTC
8320104 AAATACCATG
Statistics
Matches: 123, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
38 1 0.01
39 122 0.99
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.32
Consensus pattern (39 bp):
TGCGGACCTCATGTCCGAATATATTTCCAGCATATAGCC
Found at i:8320037 original size:78 final size:78
Alignment explanation
Indices: 8319924--8320103 Score: 261
Period size: 78 Copynumber: 2.3 Consensus size: 78
8319914 CGTGGCTTGC
* * * * *
8319924 GGACTTCAAGTCCGAATATATTTCCAGCATATAGCCTGCGGACCTCATGTCTGGATATATTCCCA
1 GGACTTCATGTCCGGATATATTTCCAGCATATAGCCTACGGACCTCATGTCCGAATATATTCCCA
8319989 GCATATAGCCTGT
66 GCATATAGCCTGT
* * *
8320002 GGACTTCATGTTCGGATATATTTCCAGTATATAGCCTACGGACCTCATGTCCGAATATATTTCCA
1 GGACTTCATGTCCGGATATATTTCCAGCATATAGCCTACGGACCTCATGTCCGAATATATTCCCA
8320067 GCATATAGCCTGT
66 GCATATAGCCTGT
* * *
8320080 AGACCTCATGTCCAGATATATTTC
1 GGACTTCATGTCCGGATATATTTC
8320104 AAATACCATG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
78 90 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (78 bp):
GGACTTCATGTCCGGATATATTTCCAGCATATAGCCTACGGACCTCATGTCCGAATATATTCCCA
GCATATAGCCTGT
Found at i:8326702 original size:87 final size:87
Alignment explanation
Indices: 8326556--8326729 Score: 348
Period size: 87 Copynumber: 2.0 Consensus size: 87
8326546 TTTTTACAGC
8326556 AAGATCATTAATTCCCAAATCACGTACCTTCGGAATTTAACCGGATATAGCTCCTCGTTCAAATG
1 AAGATCATTAATTCCCAAATCACGTACCTTCGGAATTTAACCGGATATAGCTCCTCGTTCAAATG
8326621 CCTTCGGGACATAGCCCGGTTA
66 CCTTCGGGACATAGCCCGGTTA
8326643 AAGATCATTAATTCCCAAATCACGTACCTTCGGAATTTAACCGGATATAGCTCCTCGTTCAAATG
1 AAGATCATTAATTCCCAAATCACGTACCTTCGGAATTTAACCGGATATAGCTCCTCGTTCAAATG
8326708 CCTTCGGGACATAGCCCGGTTA
66 CCTTCGGGACATAGCCCGGTTA
8326730 TAGTAACTCG
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 87 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (87 bp):
AAGATCATTAATTCCCAAATCACGTACCTTCGGAATTTAACCGGATATAGCTCCTCGTTCAAATG
CCTTCGGGACATAGCCCGGTTA
Found at i:8326802 original size:79 final size:80
Alignment explanation
Indices: 8326704--8326886 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 80
8326694 TCCTCGTTCA
* *
8326704 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
8326767 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
* **
8326784 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
8326848 ATGGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
8326863 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
8326887 CATCATTCAA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:8326886 original size:40 final size:40
Alignment explanation
Indices: 8326702--8326886 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
8326692 GCTCCTCGTT
* *
8326702 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
8326742 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
8326782 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
8326821 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
8326862 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
8326887 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 79 0.64
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:8337492 original size:29 final size:29
Alignment explanation
Indices: 8337429--8337496 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
8337419 TAATCAACCG
8337429 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
8337458 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
8337487 CGCACACTTA
1 CGCACACTTA
8337497 CCTTTCCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:8337609 original size:174 final size:174
Alignment explanation
Indices: 8337318--8337647 Score: 561
Period size: 174 Copynumber: 1.9 Consensus size: 174
8337308 AACTCAAGGT
* * *
8337318 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTCCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
8337383 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATAC
* *
8337448 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 AATTTAAACCCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
8337492 ACTTACCTTTCCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTCCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
**
8337557 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCTGTAC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATAC
*
8337622 AATTTAAACCCGCACACTTAGTGCCA
131 AATTTAAACCCACACACTTAGTGCCA
8337648 ATCTCATGAC
Statistics
Matches: 145, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
174 145 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (174 bp):
ACTTACCTTTCCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATAC
AATTTAAACCCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:8353499 original size:44 final size:44
Alignment explanation
Indices: 8353448--8353691 Score: 223
Period size: 44 Copynumber: 5.6 Consensus size: 44
8353438 TATGTGTTAT
*
8353448 CGTGTAAGACCATGTCTGGGACGTTGGCATCGACTTATGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGACTTATGATTTA
* * * * * *
8353492 TGTGTAAGACCACATCTGGGATGCTGGCATTGACTCATGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGACTTATGATTTA
* * *
8353536 CGTGTAAGACCACATCTAGGACGTTGTCA-CTGACTTATGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATC-GACTTATGATTTA
* * * *
8353580 CGTGTAAGACCACTTCTGGGACATTTGCTTCGTA-TT-TGATTT-
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCG-ACTTATGATTTA
* * * *
8353622 CGTGTAAGACCATGCCTGGGACAG-TGGCATTGA-TATTTGA-TTA
1 CGTGTAAGACCACGTCTGGGAC-GTTGGCATCGACT-TATGATTTA
* *
8353665 CATGTAAGACCACGTCTGAGACGTTGG
1 CGTGTAAGACCACGTCTGGGACGTTGG
8353692 TATTGTACGA
Statistics
Matches: 161, Mismatches: 31, Indels: 17
0.77 0.15 0.08
Matches are distributed among these distances:
41 2 0.01
42 28 0.17
43 30 0.19
44 99 0.61
45 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (44 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGACTTATGATTTA
Found at i:8353641 original size:42 final size:43
Alignment explanation
Indices: 8353573--8353677 Score: 117
Period size: 43 Copynumber: 2.4 Consensus size: 43
8353563 CACTGACTTA
* * *
8353573 TGATTTACGTGTAAGACCACTTCTGGGACATTTGC-TTCG-TATT
1 TGATTT-CGTGTAAGACCACTCCTGGGACAGTGGCATT-GATATT
8353616 TGATTTCGTGTAAGACCA-TGCCTGGGACAGTGGCATTGATATT
1 TGATTTCGTGTAAGACCACT-CCTGGGACAGTGGCATTGATATT
* *
8353659 TGATTACATGTAAGACCAC
1 TGATTTCGTGTAAGACCAC
8353678 GTCTGAGACG
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
41 1 0.02
42 24 0.45
43 28 0.53
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (43 bp):
TGATTTCGTGTAAGACCACTCCTGGGACAGTGGCATTGATATT
Found at i:8357076 original size:80 final size:80
Alignment explanation
Indices: 8356940--8357099 Score: 248
Period size: 80 Copynumber: 2.0 Consensus size: 80
8356930 AAAAGGACAC
* * * *
8356940 ACAGGGAAGGAAGCAGGGAACTGCTCAAGGAAAGCCGATTGTTCCATCTCAGAAGCCAGATTCAT
1 ACAGGGAAGGAAGCAGGGAACTACTCAAGGAAAGCCAATTGATCCATCTCAAAAGCCAGATTCAT
*
8357005 CATTAAGACTGAAGA
66 CATCAAGACTGAAGA
* *
8357020 ACAGGGAAGGAAGTAGGGAACTACTCAAGGAAAGCCAATTGATCCATCTCAAAAGCCGGATTCAT
1 ACAGGGAAGGAAGCAGGGAACTACTCAAGGAAAGCCAATTGATCCATCTCAAAAGCCAGATTCAT
*
8357085 CATCAAGATTGAAGA
66 CATCAAGACTGAAGA
8357100 TCTCCCCTCA
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
80 72 1.00
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (80 bp):
ACAGGGAAGGAAGCAGGGAACTACTCAAGGAAAGCCAATTGATCCATCTCAAAAGCCAGATTCAT
CATCAAGACTGAAGA
Found at i:8361117 original size:55 final size:55
Alignment explanation
Indices: 8360986--8361117 Score: 147
Period size: 55 Copynumber: 2.4 Consensus size: 55
8360976 CATGGTCGTA
* * **
8360986 GGCGAACCTGCTAAAACAACACGAGCGTGCAACATGCCAGTGCCTTGAAACCATG
1 GGCGAACCTGCCAAAACAACACGAGCGTGCAACACGCCAGTGCCAAGAAACCATG
* ** ** * * * *
8361041 GCCGAACCTATCAAATTAACACGAGTGTGCAACACGCCCGTGCCAAGCAACCGTG
1 GGCGAACCTGCCAAAACAACACGAGCGTGCAACACGCCAGTGCCAAGAAACCATG
8361096 GGCGAACCTGCCAAAACAACAC
1 GGCGAACCTGCCAAAACAACAC
8361118 AGGCGTGGCC
Statistics
Matches: 59, Mismatches: 18, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
55 59 1.00
ACGTcount: A:0.33, C:0.32, G:0.22, T:0.13
Consensus pattern (55 bp):
GGCGAACCTGCCAAAACAACACGAGCGTGCAACACGCCAGTGCCAAGAAACCATG
Found at i:8372232 original size:44 final size:42
Alignment explanation
Indices: 8372171--8372324 Score: 145
Period size: 43 Copynumber: 3.6 Consensus size: 42
8372161 TGTGTTATCG
*
8372171 TGTAAGACCACGTCTGGGACGTTGGTATCGACTTATGATTTACG
1 TGTAAGACCACGTCTGGGACGTTGGTATCGA-TT-TGATTTACA
* * * *
8372215 TGTAAGACCACTTCTGGGACATTGGCATTGTATTTGATTT-CA
1 TGTAAGACCACGTCTGGGACGTTGGTATCG-ATTTGATTTACA
*
8372257 TGTAAGACC-CTGCCTGGGACAG-TGGTATCGATATTTGA-TTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGTATCG--ATTTGATTTACA
* *
8372300 TGTAACACCACGTCTAGGACGTTGG
1 TGTAAGACCACGTCTGGGACGTTGG
8372325 CATTGTACGA
Statistics
Matches: 90, Mismatches: 13, Indels: 15
0.76 0.11 0.13
Matches are distributed among these distances:
41 1 0.01
42 26 0.29
43 33 0.37
44 29 0.32
45 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGTATCGATTTGATTTACA
Found at i:8382685 original size:68 final size:69
Alignment explanation
Indices: 8382613--8382760 Score: 162
Period size: 67 Copynumber: 2.2 Consensus size: 69
8382603 CATCATGTGT
* * * *
8382613 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTACAAGACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
8382675 ATGTAG
64 ATGTAG
* ** * *
8382681 ACAAGAGAGCT--ATGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCAT
1 ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCAT
8382744 GTAG
66 GTAG
8382748 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
8382761 GAGATAAACC
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
64 20 0.30
65 7 0.11
66 5 0.08
67 23 0.35
68 11 0.17
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.22
Consensus pattern (69 bp):
ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCAT
GTAG
Found at i:8382717 original size:64 final size:64
Alignment explanation
Indices: 8382637--8382820 Score: 167
Period size: 67 Copynumber: 2.8 Consensus size: 64
8382627 AGACATTATG
* * *
8382637 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTATGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
8382701 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
8382766 AA
63 AA
* * * * * *
8382768 ACCG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATG-CGTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
8382821 CGAACTATAT
Statistics
Matches: 95, Mismatches: 20, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 16 0.17
67 30 0.32
68 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.22
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:8385244 original size:29 final size:29
Alignment explanation
Indices: 8385202--8385261 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
8385192 CAATGAATCG
*
8385202 CTCACTGATGTATTTCTTTTGGAACTCCT
1 CTCACTGATGTATTTCTTTGGGAACTCCT
8385231 CTCACTGATGTATTTCTTTGGGAACTCCT
1 CTCACTGATGTATTTCTTTGGGAACTCCT
8385260 CT
1 CT
8385262 TGAAAGAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.17, C:0.25, G:0.15, T:0.43
Consensus pattern (29 bp):
CTCACTGATGTATTTCTTTGGGAACTCCT
Found at i:8391302 original size:15 final size:17
Alignment explanation
Indices: 8391272--8391303 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
8391262 TTGATACTTG
8391272 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
8391289 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
8391304 AGTTATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:8391894 original size:20 final size:21
Alignment explanation
Indices: 8391869--8391908 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
8391859 TGTTCATAGC
*
8391869 AAAAATTTTCTAAGT-TTTGT
1 AAAAATTTCCTAAGTGTTTGT
8391889 AAAAATTTCCTAAGTGTTTG
1 AAAAATTTCCTAAGTGTTTG
8391909 GTTTAGTCCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.35, C:0.07, G:0.12, T:0.45
Consensus pattern (21 bp):
AAAAATTTCCTAAGTGTTTGT
Found at i:8405570 original size:40 final size:40
Alignment explanation
Indices: 8405493--8405670 Score: 245
Period size: 40 Copynumber: 4.5 Consensus size: 40
8405483 AAACCAAGTA
* *
8405493 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
8405532 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
8405572 TCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
8405612 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
8405652 CCTTCGGGACGTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
8405671 TTATCATCCG
Statistics
Matches: 125, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
39 15 0.12
40 110 0.88
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:8406626 original size:65 final size:65
Alignment explanation
Indices: 8406522--8406650 Score: 249
Period size: 65 Copynumber: 2.0 Consensus size: 65
8406512 CTCTCGGCCA
*
8406522 CTCATTTCACAACTTAACAAAGCTTCAATTCGAAATCATTAGTGAGCATCAATTAACTTAAGCTG
1 CTCATTTCACAACTTAACAAAGCTTCAATTCGAAATCATTAGTGAGCATCAATTAAATTAAGCTG
8406587 CTCATTTCACAACTTAACAAAGCTTCAATTCGAAATCATTAGTGAGCATCAATTAAATTAAGCT
1 CTCATTTCACAACTTAACAAAGCTTCAATTCGAAATCATTAGTGAGCATCAATTAAATTAAGCT
8406651 ACCTTTAAAC
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (65 bp):
CTCATTTCACAACTTAACAAAGCTTCAATTCGAAATCATTAGTGAGCATCAATTAAATTAAGCTG
Found at i:8413907 original size:40 final size:40
Alignment explanation
Indices: 8413833--8414047 Score: 310
Period size: 40 Copynumber: 5.4 Consensus size: 40
8413823 CCAAGTACCC
* * *
8413833 TCGGGATTTAG-CCGGATATAGCT-ACTCACTCAAATGCCT
1 TCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCT
*
8413872 TCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCT
8413912 TCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCT
*
8413952 TCGGGACTTAGCCCAGATATAGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCT
* * * *
8413992 TCGGGGCTTAGCCCAGA-ATTAGTCACTAGCACAAATGCCT
1 TCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCT
8414032 TCGGGACTTAGCCCGG
1 TCGGGACTTAGCCCGG
8414048 TTATCATCCG
Statistics
Matches: 162, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 12 0.07
40 150 0.93
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCT
Found at i:8416063 original size:28 final size:27
Alignment explanation
Indices: 8416032--8416122 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
8416022 AGGAAGCGTC
*
8416032 CTGGTGGCTATGCCACAAATTATCTGTT
1 CTGGTGGC-ATGCCACAAAATATCTGTT
* *
8416060 CTGGTGGCCCTGCCACAAACTATCTGTT
1 CTGGTGG-CATGCCACAAAATATCTGTT
8416088 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCA-TGCCACAAAATATCTGT-T
8416117 CTGGTG
1 CTGGTG
8416123 ACTCTGTCAT
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 1 0.02
28 47 0.84
29 8 0.14
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.31
Consensus pattern (27 bp):
CTGGTGGCATGCCACAAAATATCTGTT
Found at i:8433157 original size:25 final size:25
Alignment explanation
Indices: 8433118--8433199 Score: 110
Period size: 25 Copynumber: 3.3 Consensus size: 25
8433108 CTTGTACATT
* * *
8433118 TATGCTCATACGAGCTGTGAATTGG
1 TATGCTCACATGAGCTGTAAATTGG
* *
8433143 TATGCTCACATGAGCTATAAATAGG
1 TATGCTCACATGAGCTGTAAATTGG
*
8433168 TATGCTCTCATGAGCTGTAAATTGG
1 TATGCTCACATGAGCTGTAAATTGG
8433193 TATGCTC
1 TATGCTC
8433200 TCACGAGTTG
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 49 1.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (25 bp):
TATGCTCACATGAGCTGTAAATTGG
Found at i:8433200 original size:25 final size:25
Alignment explanation
Indices: 8433129--8433202 Score: 112
Period size: 25 Copynumber: 3.0 Consensus size: 25
8433119 ATGCTCATAC
* *
8433129 GAGCTGTGAATTGGTATGCTCACAT
1 GAGCTGTAAATTGGTATGCTCTCAT
* *
8433154 GAGCTATAAATAGGTATGCTCTCAT
1 GAGCTGTAAATTGGTATGCTCTCAT
8433179 GAGCTGTAAATTGGTATGCTCTCA
1 GAGCTGTAAATTGGTATGCTCTCA
8433203 CGAGTTGTGG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.32
Consensus pattern (25 bp):
GAGCTGTAAATTGGTATGCTCTCAT
Found at i:8435346 original size:43 final size:43
Alignment explanation
Indices: 8435298--8435406 Score: 164
Period size: 43 Copynumber: 2.5 Consensus size: 43
8435288 CGGCATTTCA
** * *
8435298 CCTGCTAGGCTTGAAGCCCGATATCATTTCAGTGGCATTATAG
1 CCTGCTAGGCCCGAAGCCCGATATCATCTCACTGGCATTATAG
*
8435341 CCTGCTAGGCCCGAAGCCCGATATTATCTCACTGGCATTATAG
1 CCTGCTAGGCCCGAAGCCCGATATCATCTCACTGGCATTATAG
*
8435384 CCTGCTAGGCCCCAAGCCCGATA
1 CCTGCTAGGCCCGAAGCCCGATA
8435407 ATATTATTCA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (43 bp):
CCTGCTAGGCCCGAAGCCCGATATCATCTCACTGGCATTATAG
Found at i:8439076 original size:40 final size:40
Alignment explanation
Indices: 8439021--8439244 Score: 306
Period size: 40 Copynumber: 5.5 Consensus size: 40
8439011 TATTCGGATG
8439021 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
8439061 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
8439104 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
8439144 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
8439184 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
8439224 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
8439245 ATGCTTGGGT
Statistics
Matches: 165, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
39 13 0.08
40 114 0.69
41 1 0.01
43 37 0.22
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:8439164 original size:83 final size:80
Alignment explanation
Indices: 8439025--8439244 Score: 302
Period size: 83 Copynumber: 2.7 Consensus size: 80
8439015 CGGATGATAT
* **
8439025 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
8439090 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
*
8439108 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
8439173 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
8439188 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
8439245 ATGCTTGGGT
Statistics
Matches: 127, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
79 16 0.13
80 45 0.35
81 2 0.02
83 64 0.50
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:8439796 original size:100 final size:100
Alignment explanation
Indices: 8439623--8439821 Score: 362
Period size: 100 Copynumber: 2.0 Consensus size: 100
8439613 CTCGGGATTG
*
8439623 TCGAAGTCGAAGTCGTCCACACTATCTAAGCCCTTTTGGTACTCTTTTAGTTAAACGTTGATAAT
1 TCGAAGTCGAAATCGTCCACACTATCTAAGCCCTTTTGGTACTCTTTTAGTTAAACGTTGATAAT
8439688 GGCATGTATAGGACTAACATTTGTTGTTAATCAAA
66 GGCATGTATAGGACTAACATTTGTTGTTAATCAAA
* *
8439723 TCGAAGTCGAAATCGTCCTCACTGTCTAAGCCCTTTTGGTACTCTTTTAGTTAAACGTTGATAAT
1 TCGAAGTCGAAATCGTCCACACTATCTAAGCCCTTTTGGTACTCTTTTAGTTAAACGTTGATAAT
*
8439788 GGCATGTATAGGACTAACCTTTGTTGTTAATCAA
66 GGCATGTATAGGACTAACATTTGTTGTTAATCAA
8439822 GTACCTTTGG
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 95 1.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.36
Consensus pattern (100 bp):
TCGAAGTCGAAATCGTCCACACTATCTAAGCCCTTTTGGTACTCTTTTAGTTAAACGTTGATAAT
GGCATGTATAGGACTAACATTTGTTGTTAATCAAA
Found at i:8447453 original size:40 final size:40
Alignment explanation
Indices: 8447357--8447540 Score: 214
Period size: 40 Copynumber: 4.5 Consensus size: 40
8447347 TATTCAGATG
*
8447357 ATATCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGT-G--ACT
8447400 ATA-CCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCC-GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* **
8447440 ATATCTGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
8447480 ATATCCGGGCTAAGACCCGAACGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
8447520 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
8447541 ATACTTGGGT
Statistics
Matches: 124, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 12 0.10
40 74 0.60
41 3 0.02
42 3 0.02
43 31 0.25
44 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:8452265 original size:27 final size:26
Alignment explanation
Indices: 8452235--8452342 Score: 94
Period size: 27 Copynumber: 4.0 Consensus size: 26
8452225 AGCATCTTGA
8452235 TGGCTACGCCACAATTATCTGATCTGG
1 TGGCT-CGCCACAATTATCTGATCTGG
* * *
8452262 TGGCTTTGCCA-TATATATCTGTTCTGG
1 TGGC-TCGCCACAAT-TATCTGATCTGG
8452289 TGGCTCTGCCACAATTATCTGTATCTGG
1 TGGCTC-GCCACAATTATCTG-ATCTGG
* * *
8452317 TGACTCTGTCAC-ATTATCTGTTCTGG
1 TGGCTC-GCCACAATTATCTGATCTGG
8452343 CAGCCATGCT
Statistics
Matches: 67, Mismatches: 9, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
26 8 0.12
27 41 0.61
28 18 0.27
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (26 bp):
TGGCTCGCCACAATTATCTGATCTGG
Found at i:8453931 original size:23 final size:23
Alignment explanation
Indices: 8453905--8454003 Score: 103
Period size: 23 Copynumber: 4.3 Consensus size: 23
8453895 TGATGATCAT
8453905 TAAGCTCAAATGAGTTGAAACAG
1 TAAGCTCAAATGAGTTGAAACAG
* *
8453928 TAAGCTC-TATCGAGCTG-AACAG
1 TAAGCTCAAAT-GAGTTGAAACAG
* * *
8453950 TAAGCTCATACGAGTTGAAACGG
1 TAAGCTCAAATGAGTTGAAACAG
* *
8453973 TAAGCTCCAATGAGTTAAAAACAG
1 TAAGCTCAAATGAGTT-GAAACAG
8453997 TAAGCTC
1 TAAGCTC
8454004 TTACGAGCTG
Statistics
Matches: 62, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
22 19 0.31
23 31 0.50
24 12 0.19
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.22
Consensus pattern (23 bp):
TAAGCTCAAATGAGTTGAAACAG
Found at i:8454672 original size:21 final size:20
Alignment explanation
Indices: 8454648--8454691 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 20
8454638 AAACTGGTAT
*
8454648 ATCTATCATTAAACCTTTATA
1 ATCTATCATTAAACATTTA-A
8454669 ATCTATCATTAAACATTTAA
1 ATCTATCATTAAACATTTAA
8454689 ATC
1 ATC
8454692 CTCAATCATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (20 bp):
ATCTATCATTAAACATTTAA
Found at i:8458678 original size:38 final size:38
Alignment explanation
Indices: 8458593--8458771 Score: 207
Period size: 38 Copynumber: 4.7 Consensus size: 38
8458583 AAAACCAAAC
* * *
8458593 ATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAGAT
1 ATAATACCAGCACGAAGCCTGCGGGA-TTT-AACCCAGAT
* *
8458633 ATAATACCAGCACTAGGCCTGCGGGATTTAACCCAGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCAGAT
* * *
8458671 ATAATACCAGCACGAAGCCTGCAGGATTTAACTCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCAGAT
* * *
8458709 ATATTACCAGCACGAAGCCTGTGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCAGAT
* *
8458747 ATAATTCCAGCA-TATAGCCTGCGGG
1 ATAATACCAGCACGA-AGCCTGCGGG
8458772 TCTTTAAGCC
Statistics
Matches: 120, Mismatches: 18, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
37 1 0.01
38 94 0.78
39 3 0.03
40 22 0.18
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.21
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTGCGGGATTTAACCCAGAT
Found at i:8458717 original size:76 final size:78
Alignment explanation
Indices: 8458593--8458758 Score: 228
Period size: 76 Copynumber: 2.2 Consensus size: 78
8458583 AAAACCAAAC
* * * *
8458593 ATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAGATATAATACCAGCACTAGGCCTGCGGG
1 ATAATACCAGCACGAAGCCTACAGGACTTTAAACTCAGATATAATACCAGCACGAAGCCTGCGGG
8458658 ATTTAACCCAGAT
66 ATTTAACCCAGAT
* * * *
8458671 ATAATACCAGCACGAAGCCTGCAGGA-TTT-AACTCGGATATATTACCAGCACGAAGCCTGTGGG
1 ATAATACCAGCACGAAGCCTACAGGACTTTAAACTCAGATATAATACCAGCACGAAGCCTGCGGG
*
8458734 ATTTAACCCGGAT
66 ATTTAACCCAGAT
*
8458747 ATAATTCCAGCA
1 ATAATACCAGCA
8458759 TATAGCCTGC
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
76 52 0.67
77 3 0.04
78 23 0.29
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.21
Consensus pattern (78 bp):
ATAATACCAGCACGAAGCCTACAGGACTTTAAACTCAGATATAATACCAGCACGAAGCCTGCGGG
ATTTAACCCAGAT
Found at i:8462975 original size:57 final size:59
Alignment explanation
Indices: 8462907--8463023 Score: 157
Period size: 57 Copynumber: 2.0 Consensus size: 59
8462897 GTGCCCACTG
* *
8462907 ACCGATCTCGCACACATAGTGCTCGGTTGAA-GAACTCGCACACACAGTGCCTC-AATT
1 ACCGATCTCGCACACATAGTGCTCAGTTAAAGGAACTCGCACACACAGTGCCTCTAATT
* * * * *
8462964 ACCGATTTCGCACATATTGTGCTCAGTTAAAGGAATTTGCACACACAGTGCCTCTAATT
1 ACCGATCTCGCACACATAGTGCTCAGTTAAAGGAACTCGCACACACAGTGCCTCTAATT
8463023 A
1 A
8463024 TTCGCACACA
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
57 26 0.51
58 20 0.39
59 5 0.10
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (59 bp):
ACCGATCTCGCACACATAGTGCTCAGTTAAAGGAACTCGCACACACAGTGCCTCTAATT
Found at i:8463232 original size:43 final size:43
Alignment explanation
Indices: 8463183--8463307 Score: 205
Period size: 43 Copynumber: 2.9 Consensus size: 43
8463173 CACCGGCATT
** *
8463183 AAGCCTGCTAGGCACGAACACCCGAATACACATCACTGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACTGACACG
* *
8463226 GAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACTGACACG
8463269 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACTGA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACTGA
8463308 GTTTCATGCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 75 1.00
ACGTcount: A:0.32, C:0.34, G:0.23, T:0.11
Consensus pattern (43 bp):
AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACTGACACG
Found at i:8464951 original size:38 final size:37
Alignment explanation
Indices: 8464866--8465059 Score: 174
Period size: 38 Copynumber: 5.0 Consensus size: 37
8464856 AAACCCAAAC
* * * *
8464866 ATAACACCAGCATAAAGCCTACGGGACTTTAAACTCAGAT
1 ATAATACCAGCAT-AAGCCTGCGGGA-TTT-AACCCGGAT
* * *
8464906 ATGATACCAGTACTAGGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCA-TAAGCCTGCGGGATTTAACCCGGAT
* *
8464944 ATAATACCAGCATGAAGCCTGCAGGATTTAACCTGGAT
1 ATAATACCAGCAT-AAGCCTGCGGGATTTAACCCGGAT
* * * *
8464982 ATATTACCAACACGAAGCCTACGGGATTTAACCCGGAT
1 ATAATACCAGCA-TAAGCCTGCGGGATTTAACCCGGAT
*
8465020 ATAAT-CCAGCATATAGCCTGCGGGTCTTTAAGCCCGGAT
1 ATAATACCAGCATA-AGCCTGCGGG-ATTTAA-CCCGGAT
8465059 A
1 A
8465060 CACATCAAAT
Statistics
Matches: 125, Mismatches: 23, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
36 1 0.01
37 15 0.12
38 78 0.62
39 11 0.09
40 19 0.15
41 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (37 bp):
ATAATACCAGCATAAGCCTGCGGGATTTAACCCGGAT
Found at i:8466961 original size:120 final size:120
Alignment explanation
Indices: 8466748--8466988 Score: 464
Period size: 120 Copynumber: 2.0 Consensus size: 120
8466738 AGTCATTTTG
8466748 ACCCTGTCCTACATCACTTCAAATATATTATTATCGGAAATTATTTTGCTTACATGGTTTCTTTT
1 ACCCTGTCCTACATCACTTCAAATATATTATTATCGGAAATTATTTTGCTTACATGGTTTCTTTT
*
8466813 ATAAGAAACTAGACTCATTAAGCTTTAATTACATAATTTATTCAGGTTATAACTC
66 ATAAGAAACTAGACTCATTAAGCTTTAATTACATAATTTATTCAGCTTATAACTC
*
8466868 ACCCTGTCCTACATCACTTCAAATTTATTATTATCGGAAATTATTTTGCTTACATGGTTTCTTTT
1 ACCCTGTCCTACATCACTTCAAATATATTATTATCGGAAATTATTTTGCTTACATGGTTTCTTTT
8466933 ATAAGAAACTAGACTCATTAAGCTTTAATTACATAATTTATTCAGCTTATAACTC
66 ATAAGAAACTAGACTCATTAAGCTTTAATTACATAATTTATTCAGCTTATAACTC
8466988 A
1 A
8466989 ACTCCCAAAT
Statistics
Matches: 119, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 119 1.00
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.41
Consensus pattern (120 bp):
ACCCTGTCCTACATCACTTCAAATATATTATTATCGGAAATTATTTTGCTTACATGGTTTCTTTT
ATAAGAAACTAGACTCATTAAGCTTTAATTACATAATTTATTCAGCTTATAACTC
Found at i:8470859 original size:47 final size:47
Alignment explanation
Indices: 8470800--8470911 Score: 143
Period size: 47 Copynumber: 2.4 Consensus size: 47
8470790 TAACCGTGGT
*
8470800 ATATCCACTTAGCACCACGTTAATGAATCGATATATGTAACCGTAAC
1 ATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTAAC
* * * * ***
8470847 ATATCCACTTAGCACCACGTTACTGTATCAATATGTGTAATCGTGGT
1 ATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTAAC
*
8470894 ATATCCACTTAGTACCAC
1 ATATCCACTTAGCACCAC
8470912 ATTTTTTCAT
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.30
Consensus pattern (47 bp):
ATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTAAC
Found at i:8471425 original size:52 final size:52
Alignment explanation
Indices: 8471363--8471465 Score: 197
Period size: 52 Copynumber: 2.0 Consensus size: 52
8471353 AAGGTTCAGA
8471363 AATTAAACTTCATCCTATTTTCTTATGTTTTATGACATGCTGATCATTTTTC
1 AATTAAACTTCATCCTATTTTCTTATGTTTTATGACATGCTGATCATTTTTC
*
8471415 AATTAAACTTCATCCTATTTTCTTATTTTTTATGACATGCTGATCATTTTT
1 AATTAAACTTCATCCTATTTTCTTATGTTTTATGACATGCTGATCATTTTT
8471466 TCCTTCTATA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.25, C:0.17, G:0.07, T:0.51
Consensus pattern (52 bp):
AATTAAACTTCATCCTATTTTCTTATGTTTTATGACATGCTGATCATTTTTC
Found at i:8476676 original size:50 final size:50
Alignment explanation
Indices: 8476570--8476700 Score: 147
Period size: 50 Copynumber: 2.6 Consensus size: 50
8476560 CATGTGAGCT
* * *
8476570 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGAAAGAGGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGAAAGAAGAAAGCC
* * * * * *
8476620 AATGTAAGACCATGTTTGGGATATGGCATCGGC-CTCGATATAAGAAAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGAAAGAAGAAAGCC
**
8476670 AGTGTAAGACCATGTCTGTTACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
8476701 ACTCGATATG
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
49 1 0.02
50 65 0.98
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.22
Consensus pattern (50 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGAAAGAAGAAAGCC
Found at i:8476799 original size:43 final size:43
Alignment explanation
Indices: 8476703--8476815 Score: 129
Period size: 43 Copynumber: 2.6 Consensus size: 43
8476693 TGGCATCGAC
* **
8476703 TCGATATGTGATTACATGTAAGACCATGTCTGGGATATTGGCA
1 TCGATATGTGATTACATGTAAGACCATGTCTGGGACAGAGGCA
* * * * *
8476746 TAG-TATTGTGATTTCGTGTAAGACCTTGTGTGGGACAGAGGCA
1 TCGATA-TGTGATTACATGTAAGACCATGTCTGGGACAGAGGCA
*
8476789 TCGATATGTGATAACATGTAAGACCAT
1 TCGATATGTGATTACATGTAAGACCAT
8476816 ATCTAGGATA
Statistics
Matches: 55, Mismatches: 13, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
42 2 0.04
43 51 0.93
44 2 0.04
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.32
Consensus pattern (43 bp):
TCGATATGTGATTACATGTAAGACCATGTCTGGGACAGAGGCA
Found at i:8480204 original size:46 final size:46
Alignment explanation
Indices: 8480149--8480268 Score: 213
Period size: 46 Copynumber: 2.6 Consensus size: 46
8480139 GTTTGGGCAT
8480149 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
8480195 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
8480241 CCGAACTCGTTGAGTTGAGTCCGAGTTC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC
8480269 GAGAGATGTA
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:8482580 original size:47 final size:47
Alignment explanation
Indices: 8482462--8482580 Score: 157
Period size: 47 Copynumber: 2.5 Consensus size: 47
8482452 GTTTAACCAT
* * *
8482462 GTATATCCACTTAGCACCACGTTAATGAATCGATATATGTAACCGTA
1 GTATATCCACTTAGCACCACGTTACTGAATCAATATAGGTAACCGTA
** * * * *
8482509 ACATATCCACTTAGCACCACGTTACTGTATCAATATGGGTAATCGTG
1 GTATATCCACTTAGCACCACGTTACTGAATCAATATAGGTAACCGTA
8482556 GTATATCCACTTAGCACCACGTTAC
1 GTATATCCACTTAGCACCACGTTAC
8482581 ACGTATAACC
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 61 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.29
Consensus pattern (47 bp):
GTATATCCACTTAGCACCACGTTACTGAATCAATATAGGTAACCGTA
Found at i:8484690 original size:208 final size:208
Alignment explanation
Indices: 8484068--8484697 Score: 1210
Period size: 208 Copynumber: 3.0 Consensus size: 208
8484058 GCATCTCTGT
* * *
8484068 CTCTAATTGATATTCCCGTAGAAGCAGTAGAACTAGGATGATAATCTCTAAATTTCTTTGATGCT
1 CTCTAATTGAAATTCCCGCAAAAGCAGTAGAACTAGGATGATAATCTCTAAATTTCTTTGATGCT
8484133 GACTGATGCGATTTGCCCGCAAATCTTTCTAGAATCTCTAGACTCAGTATCGGCTTTTCTTTTCT
66 GACTGATGCGATTTGCCCGCAAATCTTTCTAGAATCTCTAGACTCAGTATCGGCTTTTCTTTTCT
8484198 CTTTGCACATCTCTTCGGCTTCACAAGCTTAGTCAAACAAAACAACAAACTCTTTCAGCTCAAGA
131 CTTTGCACATCTCTTCGGCTTCACAAGCTTAGTCAAACAAAACAACAAACTCTTTCAGCTCAAGA
8484263 ATTCCAAATAACA
196 ATTCCAAATAACA
8484276 CTCTAATTGAAATTCCCGCAAAAGCAGTAGAACTAGGATGATAATCTCTAAATTTC--TGATGCT
1 CTCTAATTGAAATTCCCGCAAAAGCAGTAGAACTAGGATGATAATCTCTAAATTTCTTTGATGCT
8484339 GACTGATGCGATTTGCCCGCAAATCTTTCTAGAATCTCTAGACTCAGTATCGGCTTTTCTTTTCT
66 GACTGATGCGATTTGCCCGCAAATCTTTCTAGAATCTCTAGACTCAGTATCGGCTTTTCTTTTCT
8484404 CTTTGCACATCTCTTCGGCTTCACAAGCTTAGTCAAACAAAACAACAAACTCTTTCAGCTCAAGA
131 CTTTGCACATCTCTTCGGCTTCACAAGCTTAGTCAAACAAAACAACAAACTCTTTCAGCTCAAGA
8484469 ATTCCAAATAACA
196 ATTCCAAATAACA
8484482 CTCTAATTGAAATTCCCGCAAAAGCAGTAGAACTAGGATGATAATCTCTAAATTTCTTTGATGCT
1 CTCTAATTGAAATTCCCGCAAAAGCAGTAGAACTAGGATGATAATCTCTAAATTTCTTTGATGCT
*
8484547 GACTGATGCGATTTGCTCGCAAATCTTTCTAGAATCTCTAGACTCAGTATCGGCTTTTCTTTTCT
66 GACTGATGCGATTTGCCCGCAAATCTTTCTAGAATCTCTAGACTCAGTATCGGCTTTTCTTTTCT
8484612 CTTTGCACATCTCTTCGGCTTCACAAGCTTAGTCAAACAAAACAACAAACTCTTTCAGCTCAAGA
131 CTTTGCACATCTCTTCGGCTTCACAAGCTTAGTCAAACAAAACAACAAACTCTTTCAGCTCAAGA
8484677 ATTCCAAATAACA
196 ATTCCAAATAACA
8484690 CTCTAATT
1 CTCTAATT
8484698 TCTTCATTCA
Statistics
Matches: 416, Mismatches: 4, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
206 206 0.50
208 210 0.50
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.32
Consensus pattern (208 bp):
CTCTAATTGAAATTCCCGCAAAAGCAGTAGAACTAGGATGATAATCTCTAAATTTCTTTGATGCT
GACTGATGCGATTTGCCCGCAAATCTTTCTAGAATCTCTAGACTCAGTATCGGCTTTTCTTTTCT
CTTTGCACATCTCTTCGGCTTCACAAGCTTAGTCAAACAAAACAACAAACTCTTTCAGCTCAAGA
ATTCCAAATAACA
Found at i:8487065 original size:22 final size:22
Alignment explanation
Indices: 8487008--8487099 Score: 107
Period size: 22 Copynumber: 4.1 Consensus size: 22
8486998 CCTGAGCTAA
*
8487008 TGAATAGTAAGCTCTAAT-GAGC
1 TGAACAGTAAGCTCT-ATCGAGC
* *
8487030 TAAAACGGTAAGCTCTATCGAGC
1 T-GAACAGTAAGCTCTATCGAGC
*
8487053 TGAACAGTAAGCTCTGTCGAGC
1 TGAACAGTAAGCTCTATCGAGC
8487075 TGAACAGTAAGCTC-ATACGAGC
1 TGAACAGTAAGCTCTAT-CGAGC
8487097 TGA
1 TGA
8487100 TATATCGGAA
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
21 1 0.02
22 43 0.72
23 16 0.27
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.23
Consensus pattern (22 bp):
TGAACAGTAAGCTCTATCGAGC
Found at i:8487075 original size:45 final size:44
Alignment explanation
Indices: 8487008--8487099 Score: 107
Period size: 45 Copynumber: 2.1 Consensus size: 44
8486998 CCTGAGCTAA
* *
8487008 TGAATAGTAAGCTCTAATGAGCTAAAACGGTAAGCTC-TATCGAGC
1 TGAACAGTAAGCTCTAATGAGCT-AAACAGTAAGCTCATA-CGAGC
* *
8487053 TGAACAGTAAGCTCT-GTCGAGCTGAACAGTAAGCTCATACGAGC
1 TGAACAGTAAGCTCTAAT-GAGCTAAACAGTAAGCTCATACGAGC
8487097 TGA
1 TGA
8487100 TATATCGGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
44 20 0.49
45 21 0.51
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.23
Consensus pattern (44 bp):
TGAACAGTAAGCTCTAATGAGCTAAACAGTAAGCTCATACGAGC
Found at i:8490985 original size:65 final size:65
Alignment explanation
Indices: 8490904--8491108 Score: 410
Period size: 65 Copynumber: 3.2 Consensus size: 65
8490894 ATTTACGACC
8490904 GTACAAAGCCTCGTAAGGTGCCATCTTAATACTTGATTGAAAACTATTGTTGTAAGCGAATTCAA
1 GTACAAAGCCTCGTAAGGTGCCATCTTAATACTTGATTGAAAACTATTGTTGTAAGCGAATTCAA
8490969 GTACAAAGCCTCGTAAGGTGCCATCTTAATACTTGATTGAAAACTATTGTTGTAAGCGAATTCAA
1 GTACAAAGCCTCGTAAGGTGCCATCTTAATACTTGATTGAAAACTATTGTTGTAAGCGAATTCAA
8491034 GTACAAAGCCTCGTAAGGTGCCATCTTAATACTTGATTGAAAACTATTGTTGTAAGCGAATTCAA
1 GTACAAAGCCTCGTAAGGTGCCATCTTAATACTTGATTGAAAACTATTGTTGTAAGCGAATTCAA
8491099 GTACAAAGCC
1 GTACAAAGCC
8491109 GGTGCTAAAA
Statistics
Matches: 140, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 140 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.30
Consensus pattern (65 bp):
GTACAAAGCCTCGTAAGGTGCCATCTTAATACTTGATTGAAAACTATTGTTGTAAGCGAATTCAA
Found at i:8496483 original size:27 final size:27
Alignment explanation
Indices: 8496453--8496630 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
8496443 ATATTGAGTC
* *
8496453 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
8496480 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
8496507 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
8496535 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* * **
8496562 TGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
8496589 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
8496616 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
8496631 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:8504594 original size:27 final size:27
Alignment explanation
Indices: 8504564--8504741 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
8504554 ATATTGAGTC
* * * *
8504564 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
8504591 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
8504618 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
8504646 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
8504673 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
8504700 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
8504727 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
8504742 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:8504703 original size:82 final size:81
Alignment explanation
Indices: 8504585--8504740 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
8504575 TGCTATATAA
* *
8504585 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
8504650 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
8504667 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
8504731 CACTTAGTGC
65 CACTTAGTGC
8504741 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:8505242 original size:12 final size:12
Alignment explanation
Indices: 8505225--8505250 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8505215 ATGGCATACT
8505225 TATGTATATATA
1 TATGTATATATA
8505237 TATGTATATATA
1 TATGTATATATA
8505249 TA
1 TA
8505251 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:8506654 original size:27 final size:27
Alignment explanation
Indices: 8506624--8506675 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
8506614 TTCATATATA
* * *
8506624 TCATAGGGGCATATCAGTCATTTTACC
1 TCATAGGAGCATAACAATCATTTTACC
*
8506651 TCATAGGAGTATAACAATCATTTTA
1 TCATAGGAGCATAACAATCATTTTA
8506676 TTGAATTGGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (27 bp):
TCATAGGAGCATAACAATCATTTTACC
Done.