Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 27 of 235
Found at i:8509431 original size:30 final size:30
Alignment explanation
Indices: 8509395--8509556 Score: 125
Period size: 30 Copynumber: 5.2 Consensus size: 30
8509385 GAAATTCATT
8509395 TTAAAAGCCTAGGGACTTAATTGTAAAATG
1 TTAAAAGCCTAGGGACTTAATTGTAAAATG
* * * * *
8509425 TTAAAAGTCTATGAAATTGAA-TG-AAATTCATT
1 TTAAAAGCCTAGGGACTT-AATTGTAAA---ATG
8509457 TTAAAAGCCTAGGGACTTAATTGTAAAATG
1 TTAAAAGCCTAGGGACTTAATTGTAAAATG
* * * * *
8509487 TTAAAAGTCTATGAAATTGAA-TG-AAATTCATT
1 TTAAAAGCCTAGGGACTT-AATTGTAAA---ATG
8509519 TTAAAAGCCTAGGGACTTAATTGTAAAATG
1 TTAAAAGCCTAGGGACTTAATTGTAAAATG
8509549 TTGAAAAG
1 TT-AAAAG
8509557 TTAAGGGCAA
Statistics
Matches: 99, Mismatches: 20, Indels: 25
0.69 0.14 0.17
Matches are distributed among these distances:
29 6 0.06
30 38 0.38
31 13 0.13
32 36 0.36
33 6 0.06
ACGTcount: A:0.42, C:0.08, G:0.17, T:0.33
Consensus pattern (30 bp):
TTAAAAGCCTAGGGACTTAATTGTAAAATG
Found at i:8509446 original size:62 final size:62
Alignment explanation
Indices: 8509373--8509557 Score: 361
Period size: 62 Copynumber: 3.0 Consensus size: 62
8509363 ATTCAATTTA
8509373 ATGAAATTGAATGAAATTCATTTTAAAAGCCTAGGGACTTAATTGTAAAATGTTAAAAGTCT
1 ATGAAATTGAATGAAATTCATTTTAAAAGCCTAGGGACTTAATTGTAAAATGTTAAAAGTCT
8509435 ATGAAATTGAATGAAATTCATTTTAAAAGCCTAGGGACTTAATTGTAAAATGTTAAAAGTCT
1 ATGAAATTGAATGAAATTCATTTTAAAAGCCTAGGGACTTAATTGTAAAATGTTAAAAGTCT
8509497 ATGAAATTGAATGAAATTCATTTTAAAAGCCTAGGGACTTAATTGTAAAATGTTGAAAAGT
1 ATGAAATTGAATGAAATTCATTTTAAAAGCCTAGGGACTTAATTGTAAAATGTT-AAAAGT
8509558 TAAGGGCAAA
Statistics
Matches: 122, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
62 116 0.95
63 6 0.05
ACGTcount: A:0.42, C:0.08, G:0.17, T:0.34
Consensus pattern (62 bp):
ATGAAATTGAATGAAATTCATTTTAAAAGCCTAGGGACTTAATTGTAAAATGTTAAAAGTCT
Found at i:8525916 original size:47 final size:47
Alignment explanation
Indices: 8525850--8527028 Score: 1899
Period size: 47 Copynumber: 25.1 Consensus size: 47
8525840 GAAATGATAG
*
8525850 TAAGGCCTAATGGCCGATGTGATGCATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
8525897 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
8525944 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
8525991 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAAATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
8526038 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAAATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
8526085 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
8526132 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
8526179 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
8526226 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
8526273 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
8526320 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
8526367 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
8526414 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
8526461 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
8526508 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
8526555 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
8526602 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
8526649 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
8526696 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
8526743 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
8526790 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
8526837 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
8526884 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
8526931 TAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATTTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
8526978 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
8527025 TAAG
1 TAAG
8527029 TCCCGAAGGG
Statistics
Matches: 1040, Mismatches: 92, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 1040 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:8527028 original size:94 final size:94
Alignment explanation
Indices: 8525850--8526977 Score: 2112
Period size: 94 Copynumber: 12.0 Consensus size: 94
8525840 GAAATGATAG
* * * *
8525850 TAAGGCCTAATGGCCGATGTGATGCATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
8525915 GTGATGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATGTGTGA
* * *
8525944 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* *
8526009 GTGATGAATGTGAAAGTGTAAATATGTGA
66 GTGATGAATGTGAAAGTGTATATGTGTGA
* * * *
8526038 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAAATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
8526103 GTGATGAATGTGAAAGTGTATATGTGTGA
66 GTGATGAATGTGAAAGTGTATATGTGTGA
8526132 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
8526197 GTGATGAATGTGAAAGTGTATATGTGTGA
66 GTGATGAATGTGAAAGTGTATATGTGTGA
8526226 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
8526291 GTGATGAATGTGAAAGTGTATATGTGTGA
66 GTGATGAATGTGAAAGTGTATATGTGTGA
8526320 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
8526385 GTGATGAATGTGAAAGTGTATATGTGTGA
66 GTGATGAATGTGAAAGTGTATATGTGTGA
8526414 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
8526479 GTGATGAATGTGAAAGTGTATATGTGTGA
66 GTGATGAATGTGAAAGTGTATATGTGTGA
8526508 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
8526573 GTGATGAATGTGAAAGTGTATATGTGTGA
66 GTGATGAATGTGAAAGTGTATATGTGTGA
8526602 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
8526667 GTGATGAATGTGAAAGTGTATATGTGTGA
66 GTGATGAATGTGAAAGTGTATATGTGTGA
8526696 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
8526761 GTGATGAATGTGAAAGTGTATATGTGTGA
66 GTGATGAATGTGAAAGTGTATATGTGTGA
8526790 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
8526855 GTGATGAATGTGAAAGTGTATATGTGTGA
66 GTGATGAATGTGAAAGTGTATATGTGTGA
8526884 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* *
8526949 GTGATGAATGTGAAACTGTATATTTGTGA
66 GTGATGAATGTGAAAGTGTATATGTGTGA
8526978 CGGGGCCGAG
Statistics
Matches: 1023, Mismatches: 11, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 1023 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
TAAGGCCTAATAGCGGATTTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:8527203 original size:37 final size:37
Alignment explanation
Indices: 8527147--8527225 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
8527137 CCGAGCTCTA
* *
8527147 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
8527184 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
8527221 AAGAC
1 AAGAC
8527226 TTCATAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:8532669 original size:46 final size:45
Alignment explanation
Indices: 8532499--8532671 Score: 147
Period size: 46 Copynumber: 3.8 Consensus size: 45
8532489 GTAACCCACC
* * * *
8532499 CCTAAGTGAACTCAGACTCAACTCAACGAGCTC-AGGCGTTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGA-ACATTCGCAT
* **
8532544 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGAATGCCTAGTT-ATAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGAA---C-A-TTCGCAT
* * * *
8532594 -CTCA-CGAACTCGGACTCAACTTAATGAGTTCGAACATTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
8532637 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCG
8532672 GATGCTCAAC
Statistics
Matches: 101, Mismatches: 16, Indels: 21
0.73 0.12 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 4 0.04
46 53 0.52
47 29 0.29
48 2 0.02
49 2 0.02
50 2 0.02
51 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (45 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
Found at i:8537685 original size:46 final size:46
Alignment explanation
Indices: 8537618--8537710 Score: 159
Period size: 46 Copynumber: 2.0 Consensus size: 46
8537608 CCAAAATGAT
* * *
8537618 TTCTATCGTACCGCTGGCACTCGGGTTTAACAAATCTCGAGTTCCC
1 TTCTACCGCACCGCTGGCACTCAGGTTTAACAAATCTCGAGTTCCC
8537664 TTCTACCGCACCGCTGGCACTCAGGTTTAACAAATCTCGAGTTCCC
1 TTCTACCGCACCGCTGGCACTCAGGTTTAACAAATCTCGAGTTCCC
8537710 T
1 T
8537711 ACACTGGCTG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.20, C:0.32, G:0.18, T:0.29
Consensus pattern (46 bp):
TTCTACCGCACCGCTGGCACTCAGGTTTAACAAATCTCGAGTTCCC
Found at i:8540199 original size:46 final size:45
Alignment explanation
Indices: 8540130--8540304 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 45
8540120 GTAACCCGCC
* *
8540130 CCTAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * *
8540175 CCATAAGTGAACTCGGACTTAACTCAACGAGTTCGAATGCCTAGTT-ACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCG---GAC--GTTCGCAT
* * * * *
8540225 -CTCA-CGAACTCGGACTTAACTCAACGAGTTCGAACATTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
8540268 CCGTAAGTGAACTCGGACTCAACTCAACAAGTTCGGA
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
8540305 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 15, Indels: 19
0.76 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 4 0.04
46 56 0.53
47 27 0.26
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:8540252 original size:93 final size:93
Alignment explanation
Indices: 8540137--8540307 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
8540127 GCCCCTAAGT
** * *
8540137 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTTAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
8540202 CGAGTTCGAATGCCTAGTTACATCTCAC
66 CAAGTTCGAATGCCTAGTTACATCTCAC
* * *
8540230 GAACTCGGACTTAACTCAACGAGTTCGAACATTCGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
8540295 CAAGTTCGGATGC
66 CAAGTTCGAATGC
8540308 TCAACCATCC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGTTCGAATGCCTAGTTACATCTCAC
Found at i:8544188 original size:28 final size:28
Alignment explanation
Indices: 8544156--8544217 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
8544146 TACTAGAATG
*
8544156 CCCCTATGTATGCAAAATTACCATTATA
1 CCCCTATGTATGCAAAATGACCATTATA
* *
8544184 CCCCTATGTATGCTAAATGACCTTTATA
1 CCCCTATGTATGCAAAATGACCATTATA
8544212 CCCCTA
1 CCCCTA
8544218 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (28 bp):
CCCCTATGTATGCAAAATGACCATTATA
Found at i:8544364 original size:28 final size:29
Alignment explanation
Indices: 8544323--8544385 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
8544313 AGGAAGCGTC
*
8544323 CTGGTGGCTATGCCACAAATTATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTAT
8544351 CTGGTGGC-ACTGCCACAAAATATCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGTAT
8544380 CTGGTG
1 CTGGTG
8544386 ACTCTGTCAC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 1 0.03
28 24 0.75
29 7 0.22
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (29 bp):
CTGGTGGCTATGCCACAAAATATCTGTAT
Found at i:8544396 original size:29 final size:28
Alignment explanation
Indices: 8544333--8544396 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
8544323 CTGGTGGCTA
* *
8544333 TGCCACAAATTATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
8544361 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
8544390 TGTCACA
1 TGCCACA
8544397 TTTTCTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 16 0.52
29 15 0.48
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:8545499 original size:11 final size:10
Alignment explanation
Indices: 8545471--8545504 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
8545461 AGCCTGTAAG
8545471 TATTCTGAAT
1 TATTCTGAAT
*
8545481 TTTTCTGAAT
1 TATTCTGAAT
8545491 ATATTCTGAAT
1 -TATTCTGAAT
8545502 TAT
1 TAT
8545505 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:8551498 original size:11 final size:11
Alignment explanation
Indices: 8551478--8551511 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
8551468 AATTTTGAAC
*
8551478 TTACCGTTTCA
1 TTACCTTTTCA
8551489 TTACCTTTTC-
1 TTACCTTTTCA
8551499 TTACCTTTTCA
1 TTACCTTTTCA
8551510 TT
1 TT
8551512 TGTATAATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 10 0.48
11 11 0.52
ACGTcount: A:0.15, C:0.26, G:0.03, T:0.56
Consensus pattern (11 bp):
TTACCTTTTCA
Found at i:8552008 original size:33 final size:34
Alignment explanation
Indices: 8551929--8552010 Score: 85
Period size: 33 Copynumber: 2.4 Consensus size: 34
8551919 ACATTGTCAG
*
8551929 TCCAACCGAACACACAAGATGCTCACACGAGCCAA
1 TCCAACC-AACACACAAGATGCTCACAAGAGCCAA
** * * * *
8551964 TCCCTCAAACACACTA-ATGCTCATAAGAGCTAA
1 TCCAACCAACACACAAGATGCTCACAAGAGCCAA
8551997 TCCAACCAACACAC
1 TCCAACCAACACAC
8552011 CAAATAGAGT
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
33 25 0.68
34 8 0.22
35 4 0.11
ACGTcount: A:0.40, C:0.37, G:0.10, T:0.13
Consensus pattern (34 bp):
TCCAACCAACACACAAGATGCTCACAAGAGCCAA
Found at i:8557054 original size:29 final size:29
Alignment explanation
Indices: 8556991--8557058 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
8556981 TAATCAACCG
*
8556991 CGCACACTTAATGCCATGTACTTTAAACT
1 CGCACACTTAATGCCATGCACTTTAAACT
* * **
8557020 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAATGCCATGCACTTT-AAACT
8557049 CGCACACTTA
1 CGCACACTTA
8557059 CCTTTTCCGC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
28 3 0.09
29 29 0.91
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAATGCCATGCACTTTAAACT
Found at i:8557228 original size:29 final size:29
Alignment explanation
Indices: 8557165--8557232 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
8557155 TAATCAACCG
8557165 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
8557194 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
8557223 CGCACACTTA
1 CGCACACTTA
8557233 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:8557381 original size:29 final size:30
Alignment explanation
Indices: 8557334--8557412 Score: 101
Period size: 29 Copynumber: 2.7 Consensus size: 30
8557324 CTTAATAATC
8557334 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
* *
8557364 AACTCGCACACTAAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
8557393 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
8557413 ATCTCATGAC
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 31 0.76
30 4 0.10
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.24
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:8557406 original size:174 final size:174
Alignment explanation
Indices: 8556880--8557381 Score: 914
Period size: 174 Copynumber: 2.9 Consensus size: 174
8556870 AACTCAAGGT
* *
8556880 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
8556945 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAATGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
8557010 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
8557054 ACTTACCTTTTCCGCTGTCCAAATTCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
8557119 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
8557184 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
8557228 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
8557293 GAAAATATATATTGGGTTCGCACACATAATGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
* *
8557358 ACTTTAAACTCGCACACTAAGTGC
131 ACTTTAAACTCACACACTTAGTGC
8557382 TGTACAATTT
Statistics
Matches: 315, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 315 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:8562456 original size:30 final size:30
Alignment explanation
Indices: 8562422--8562479 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
8562412 TAGGCACTTC
*
8562422 CACACGGGT-GATCCACACTCCCATGTGTGA
1 CACACGGGTAGA-CCACACGCCCATGTGTGA
*
8562452 CACACGGGTAGACCACACGCCCGTGTGT
1 CACACGGGTAGACCACACGCCCATGTGT
8562480 CATGGCCATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.22, C:0.34, G:0.26, T:0.17
Consensus pattern (30 bp):
CACACGGGTAGACCACACGCCCATGTGTGA
Found at i:8566875 original size:12 final size:12
Alignment explanation
Indices: 8566858--8566892 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
8566848 TAAATTGCTA
8566858 ATGTGAAATGTT
1 ATGTGAAATGTT
8566870 ATGTGAAATGTT
1 ATGTGAAATGTT
8566882 ATGTGAAATGT
1 ATGTGAAATGT
8566893 GTTAACATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.26, T:0.40
Consensus pattern (12 bp):
ATGTGAAATGTT
Found at i:8566979 original size:39 final size:39
Alignment explanation
Indices: 8566925--8567118 Score: 307
Period size: 39 Copynumber: 5.0 Consensus size: 39
8566915 AAGACACTGA
8566925 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
8566964 AAATGTATCCGGGCTAAAGTCCCGCAAGCTTCGTGTTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
8567003 AAATATATCCGGGCCAAAGTCCCGTAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
8567042 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
8567081 AAATGTATCCGGGTTAAAGTCTCGCAGGCTTTGTGCTG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
8567119 ATAATATAAT
Statistics
Matches: 142, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 142 1.00
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:8576977 original size:15 final size:15
Alignment explanation
Indices: 8576954--8576983 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8576944 TTAAGAATTT
*
8576954 CTCCTTTTTTATTGA
1 CTCCCTTTTTATTGA
8576969 CTCCCTTTTTATTGA
1 CTCCCTTTTTATTGA
8576984 GATTTAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.23, G:0.07, T:0.57
Consensus pattern (15 bp):
CTCCCTTTTTATTGA
Found at i:8590515 original size:19 final size:19
Alignment explanation
Indices: 8590493--8590531 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
8590483 TTCAAAGTAA
*
8590493 AACACCATTATACACTTGT
1 AACACAATTATACACTTGT
8590512 AACACAATTATACACTTGT
1 AACACAATTATACACTTGT
8590531 A
1 A
8590532 CCTACTCTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.41, C:0.23, G:0.05, T:0.31
Consensus pattern (19 bp):
AACACAATTATACACTTGT
Found at i:8593657 original size:5 final size:5
Alignment explanation
Indices: 8593647--8593679 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
8593637 TAATCACATC
8593647 TTATT TTATT TTATT TTATT TTATT TTATT TTA
1 TTATT TTATT TTATT TTATT TTATT TTATT TTA
8593680 CAATAGCATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:8597180 original size:98 final size:98
Alignment explanation
Indices: 8596286--8597151 Score: 1678
Period size: 98 Copynumber: 8.8 Consensus size: 98
8596276 AGGTGTGTAT
8596286 GTGTAAGACCTGTCTGGGACATGGCATCAACACAGACAAGTGAGAGCCAGTGTAAGATCTGTCTA
1 GTGTAAGACCTGTCTGGGACATGGCATCAACACAGACAAGTGAGAGCCAGTGTAAGATCTGTCTA
8596351 GGACGTGGCATTGGCCTTGATATATGGAAGTCA
66 GGACGTGGCATTGGCCTTGATATATGGAAGTCA
8596384 GTGTAAGACCTGTCTGGGACATGGCATCAACACAGACAAGTGAGAGCCAGTGTAAGATCTGTCTA
1 GTGTAAGACCTGTCTGGGACATGGCATCAACACAGACAAGTGAGAGCCAGTGTAAGATCTGTCTA
8596449 GGACGTGGCATTGGCCTTGATATATGGAAGTCA
66 GGACGTGGCATTGGCCTTGATATATGGAAGTCA
8596482 GTGTAAGACCTGTCTGGGACATGGCATCAACACAGACAAGTGAGAGCCAGTGTAAGATCTGTCTA
1 GTGTAAGACCTGTCTGGGACATGGCATCAACACAGACAAGTGAGAGCCAGTGTAAGATCTGTCTA
8596547 GGACGTGGCATTGGCCTTGATATATGGAAGTCA
66 GGACGTGGCATTGGCCTTGATATATGGAAGTCA
8596580 GTGTAAGACCTGTCTGGGACATGGCATCAACACAGACAAGTGAGAGCCAGTGTAAGATCTGTCTA
1 GTGTAAGACCTGTCTGGGACATGGCATCAACACAGACAAGTGAGAGCCAGTGTAAGATCTGTCTA
8596645 GGACGTGGCATTGGCCTTGATATATGGAAGTCA
66 GGACGTGGCATTGGCCTTGATATATGGAAGTCA
8596678 GTGTAAGACCTGTCTGGGACATGGCATCAACACAGACAAGTGAGAGCCAGTGTAAGATCTGTCTA
1 GTGTAAGACCTGTCTGGGACATGGCATCAACACAGACAAGTGAGAGCCAGTGTAAGATCTGTCTA
8596743 GGACGTGGCATTGGCCTTGATATATGGAAGTCA
66 GGACGTGGCATTGGCCTTGATATATGGAAGTCA
8596776 GTGTAAGACCTGTCTGGGACATGGCATCAACACAGACAAGTGAGAGCCAGTGTAAGATCTGTCTA
1 GTGTAAGACCTGTCTGGGACATGGCATCAACACAGACAAGTGAGAGCCAGTGTAAGATCTGTCTA
8596841 GGACGTGGCATTGGCCTTGATATATGGAAGTCA
66 GGACGTGGCATTGGCCTTGATATATGGAAGTCA
8596874 GTGTAAGACCTGTCTGGGACATGGCATCAACACAGACAAGTGAGAGCCAGTGTAAGATCTGTCTA
1 GTGTAAGACCTGTCTGGGACATGGCATCAACACAGACAAGTGAGAGCCAGTGTAAGATCTGTCTA
8596939 GGACGTGGCATTGGCCTTGATATATGGAAGTCA
66 GGACGTGGCATTGGCCTTGATATATGGAAGTCA
8596972 GTGTAAGACCTGTCTGGGACATGGCATCAACACAGACAAGTGAGAGCCAGTGTAAGATCTGTCTA
1 GTGTAAGACCTGTCTGGGACATGGCATCAACACAGACAAGTGAGAGCCAGTGTAAGATCTGTCTA
8597037 GGACGTGGCATTGGCCTTGATATATGGAAGTCA
66 GGACGTGGCATTGGCCTTGATATATGGAAGTCA
* * * * *
8597070 GTGTAAGACCTGTCTGGGACATGGCATCGACACAGATAAGTGAGAGCTAGTGTAAGACCTGTCTG
1 GTGTAAGACCTGTCTGGGACATGGCATCAACACAGACAAGTGAGAGCCAGTGTAAGATCTGTCTA
*
8597135 GGACATGGCATTGGCCT
66 GGACGTGGCATTGGCCT
8597152 CAATGCATGG
Statistics
Matches: 762, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 762 1.00
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.23
Consensus pattern (98 bp):
GTGTAAGACCTGTCTGGGACATGGCATCAACACAGACAAGTGAGAGCCAGTGTAAGATCTGTCTA
GGACGTGGCATTGGCCTTGATATATGGAAGTCA
Found at i:8601314 original size:40 final size:40
Alignment explanation
Indices: 8601258--8601699 Score: 780
Period size: 40 Copynumber: 11.1 Consensus size: 40
8601248 CGGAATTTAA
** *
8601258 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
8601298 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
8601338 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
8601378 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
8601418 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
8601458 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
8601498 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
8601538 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
8601578 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
8601618 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
8601658 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
8601698 CC
1 CC
8601700 CGTTATCATC
Statistics
Matches: 389, Mismatches: 11, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
39 2 0.01
40 387 0.99
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:8604589 original size:40 final size:40
Alignment explanation
Indices: 8604544--8605539 Score: 1857
Period size: 40 Copynumber: 24.9 Consensus size: 40
8604534 CGAATACACG
* * * * *
8604544 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * ** * *
8604584 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
8604624 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
8604664 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
8604704 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
8604744 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
8604784 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
8604824 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
8604864 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
8604904 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
8604944 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
8604984 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
8605024 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
8605064 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
8605104 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
8605144 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
8605184 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
8605224 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
8605264 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
8605304 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
8605344 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
8605384 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
8605424 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
8605464 TCACTAGCATGAATGCTTTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
8605504 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGA
8605540 CATCATTCAA
Statistics
Matches: 937, Mismatches: 19, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 937 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:8605882 original size:29 final size:29
Alignment explanation
Indices: 8605843--8605921 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
8605833 CTTAATAATC
*
8605843 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
8605873 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
8605902 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
8605922 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:8607863 original size:37 final size:37
Alignment explanation
Indices: 8607813--8607891 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
8607803 TTATTACGAA
* * *
8607813 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
8607850 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
8607887 GTCTT
1 GTCTT
8607892 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:8608079 original size:47 final size:47
Alignment explanation
Indices: 8608010--8608516 Score: 978
Period size: 47 Copynumber: 10.7 Consensus size: 47
8608000 CCCTTCGGGA
* *
8608010 CTTATCACATTTATACACTTTCACATCCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8608057 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8608104 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8608151 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8608198 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8608245 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8608292 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8608339 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8608386 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8608433 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8608480 CTTATCACATATATATACACTTTCACATTCATCACAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACAT
8608517 AGAATCCTAA
Statistics
Matches: 456, Mismatches: 2, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
47 429 0.94
49 27 0.06
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:8609678 original size:18 final size:18
Alignment explanation
Indices: 8609655--8609696 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
8609645 CATATGCATT
8609655 TTTAATCACATCAAGCAA
1 TTTAATCACATCAAGCAA
8609673 TTTAATCACATCAAGCAA
1 TTTAATCACATCAAGCAA
8609691 TTTAAT
1 TTTAAT
8609697 ACAATTCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.43, C:0.19, G:0.05, T:0.33
Consensus pattern (18 bp):
TTTAATCACATCAAGCAA
Found at i:8619568 original size:46 final size:48
Alignment explanation
Indices: 8619489--8619616 Score: 145
Period size: 46 Copynumber: 2.7 Consensus size: 48
8619479 CATTGGGTGG
* * * * *
8619489 TATGCGAGCCAGTGTAACAAATGTTTGGCACATGCATCGG-C-CATGT
1 TATGAGAGCCAGTGTAAGACATGTTTGGAACATGCATCGGCCTCAGGT
*
8619535 TATGAGAGCCAGTGTAAGACATGTCTGGAACATGCATCGGCCTCAGGT
1 TATGAGAGCCAGTGTAAGACATGTTTGGAACATGCATCGGCCTCAGGT
* * *
8619583 TAT-ACAAGCTAGTGTAAGACCTGTTTGGAACATG
1 TATGA-GAGCCAGTGTAAGACATGTTTGGAACATG
8619617 GCGTCAGCAT
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 35 0.51
47 2 0.03
48 32 0.46
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.26
Consensus pattern (48 bp):
TATGAGAGCCAGTGTAAGACATGTTTGGAACATGCATCGGCCTCAGGT
Found at i:8619713 original size:49 final size:49
Alignment explanation
Indices: 8619650--8619766 Score: 137
Period size: 49 Copynumber: 2.4 Consensus size: 49
8619640 GTAAGAATTG
* *
8619650 TCTAGGACATGGCATCAACAC-CGATAGATGAGAGCCAATATAAGACCTT
1 TCTAGGACATGGCATCAAC-CTCGATAGATGAAAGCCAATATAAGACCTA
* ** * * *
8619699 TCTTGGACATGGCATCGGCCTCGATATATGAAAGTCAATGTAAGACCTA
1 TCTAGGACATGGCATCAACCTCGATAGATGAAAGCCAATATAAGACCTA
*
8619748 TCTAGGACACGGCATCAAC
1 TCTAGGACATGGCATCAAC
8619767 TTTAATGTGC
Statistics
Matches: 55, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
48 1 0.02
49 54 0.98
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.22
Consensus pattern (49 bp):
TCTAGGACATGGCATCAACCTCGATAGATGAAAGCCAATATAAGACCTA
Found at i:8621183 original size:27 final size:27
Alignment explanation
Indices: 8621145--8621205 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
8621135 GTTTCCAAAG
8621145 TATGATTTGGGCCTCGTAGGCCCATAT
1 TATGATTTGGGCCTCGTAGGCCCATAT
8621172 TATGATTTGGGCCTCGTAGGCCCATAT
1 TATGATTTGGGCCTCGTAGGCCCATAT
*
8621199 TAGGATT
1 TATGATT
8621206 CAACAGACCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.34
Consensus pattern (27 bp):
TATGATTTGGGCCTCGTAGGCCCATAT
Found at i:8623172 original size:24 final size:24
Alignment explanation
Indices: 8623140--8623195 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
8623130 TAATCAATCG
*
8623140 AATTTTCTAAAAAGTATTTTCCCA
1 AATTTTCTAAAAAGTATTTTCCAA
8623164 AATTTTCTAAAAAGTATTTTCCAA
1 AATTTTCTAAAAAGTATTTTCCAA
8623188 AATTTTCT
1 AATTTTCT
8623196 TTCTGTGCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.38, C:0.14, G:0.04, T:0.45
Consensus pattern (24 bp):
AATTTTCTAAAAAGTATTTTCCAA
Found at i:8632799 original size:9 final size:9
Alignment explanation
Indices: 8632785--8632819 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
8632775 GTAAATTGGA
8632785 AATTAAAAT
1 AATTAAAAT
8632794 AATTAAAAT
1 AATTAAAAT
8632803 AA-TATAAAT
1 AATTA-AAAT
8632812 AATTAAAA
1 AATTAAAA
8632820 AGAAAATATC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 2 0.08
9 20 0.83
10 2 0.08
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (9 bp):
AATTAAAAT
Found at i:8634093 original size:16 final size:16
Alignment explanation
Indices: 8634072--8634102 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8634062 AAACTCTCAA
8634072 ATAAATAACAAAAATT
1 ATAAATAACAAAAATT
*
8634088 ATAAATAAGAAAAAT
1 ATAAATAACAAAAAT
8634103 CGTAGTTTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.23
Consensus pattern (16 bp):
ATAAATAACAAAAATT
Found at i:8636131 original size:42 final size:42
Alignment explanation
Indices: 8636014--8636167 Score: 125
Period size: 43 Copynumber: 3.6 Consensus size: 42
8636004 GATATGTGAT
* * * * *
8636014 TTCGTGTAAGACCATATCTGGGAC-GTTGGCATTGATTTGTAAT
1 TTCGTGTAAGACCATGTCTGGGACAG-TGGCA-TCATATATAAG
* *
8636057 TTACGTGTAAGACCATGTTTGAGACA-TCGGCATCATATATAAG
1 TT-CGTGTAAGACCATGTCTGGGACAGT-GGCATCATATATAAG
* * *
8636100 TTCGTATAAGACCATGTCTGGGACAGTGGCATCGATATGT-GG
1 TTCGTGTAAGACCATGTCTGGGACAGTGGCATC-ATATATAAG
* *
8636142 TTACATGTAAGACCACGTCTGGGACA
1 TT-CGTGTAAGACCATGTCTGGGACA
8636168 TTGGTGTTGT
Statistics
Matches: 90, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
42 29 0.32
43 38 0.42
44 23 0.26
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (42 bp):
TTCGTGTAAGACCATGTCTGGGACAGTGGCATCATATATAAG
Found at i:8642652 original size:28 final size:28
Alignment explanation
Indices: 8642612--8642681 Score: 70
Period size: 28 Copynumber: 2.5 Consensus size: 28
8642602 GCAATCAAAT
* *
8642612 ATGGTACTCAGTGTACGAAATATTGAA-A
1 ATGGCACTTAGTGTACGAAATATT-AAGA
* *
8642640 ATGGCACTTAGTGTGCGAGATATTAAGA
1 ATGGCACTTAGTGTACGAAATATTAAGA
**
8642668 ATAACACTTAGTGT
1 ATGGCACTTAGTGT
8642682 GCAATCAAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 2 0.06
28 33 0.94
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTAAGA
Found at i:8642887 original size:34 final size:33
Alignment explanation
Indices: 8642849--8642912 Score: 92
Period size: 34 Copynumber: 1.9 Consensus size: 33
8642839 ATAATATTAT
** *
8642849 CGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTG
1 CGGGCTTCAAGCCTAGCAGGC-AAAATGCCGGTG
8642883 CGGGCTTCAAGCCTAGCAGGCAAAATGCCG
1 CGGGCTTCAAGCCTAGCAGGCAAAATGCCG
8642913 ATGAATGAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 8 0.30
34 19 0.70
ACGTcount: A:0.20, C:0.28, G:0.34, T:0.17
Consensus pattern (33 bp):
CGGGCTTCAAGCCTAGCAGGCAAAATGCCGGTG
Found at i:8650740 original size:26 final size:26
Alignment explanation
Indices: 8650711--8650762 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
8650701 AATTATCTAG
8650711 TATAATTTCTTTTTTAAACAAACTAA
1 TATAATTTCTTTTTTAAACAAACTAA
8650737 TATAATTTCTTTTTTAAACAAACTAA
1 TATAATTTCTTTTTTAAACAAACTAA
8650763 CATGTTTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.46
Consensus pattern (26 bp):
TATAATTTCTTTTTTAAACAAACTAA
Found at i:8650776 original size:25 final size:26
Alignment explanation
Indices: 8650712--8650777 Score: 71
Period size: 26 Copynumber: 2.6 Consensus size: 26
8650702 ATTATCTAGT
** *
8650712 ATAATTTCTTTTTTAAACAAACTAAT
1 ATAATTTCAATTTTAAACAAACTAAC
**
8650738 ATAATTTCTTTTTTAAACAAACTAAC
1 ATAATTTCAATTTTAAACAAACTAAC
*
8650764 AT-GTTTCAATTTTA
1 ATAATTTCAATTTTA
8650778 CCATTTATCT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
25 9 0.25
26 27 0.75
ACGTcount: A:0.39, C:0.12, G:0.02, T:0.47
Consensus pattern (26 bp):
ATAATTTCAATTTTAAACAAACTAAC
Found at i:8654366 original size:11 final size:11
Alignment explanation
Indices: 8654346--8654379 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
8654336 AATTTTGAAC
*
8654346 TTACCATTTCA
1 TTACCTTTTCA
8654357 TTACCTTTTC-
1 TTACCTTTTCA
8654367 TTACCTTTTCA
1 TTACCTTTTCA
8654378 TT
1 TT
8654380 TGTATAATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 10 0.48
11 11 0.52
ACGTcount: A:0.18, C:0.26, G:0.00, T:0.56
Consensus pattern (11 bp):
TTACCTTTTCA
Found at i:8654860 original size:33 final size:34
Alignment explanation
Indices: 8654781--8654862 Score: 85
Period size: 33 Copynumber: 2.4 Consensus size: 34
8654771 ATATTGTCAG
8654781 TCCAACCGAACACACAAGATGCTCACACGAGCCAA
1 TCCAACC-AACACACAAGATGCTCACACGAGCCAA
** * * * * *
8654816 TCCCTCAAACACACTA-ATGCTCATACGATCTAA
1 TCCAACCAACACACAAGATGCTCACACGAGCCAA
8654849 TCCAACCAACACAC
1 TCCAACCAACACAC
8654863 CAAATAGAGT
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
33 25 0.68
34 8 0.22
35 4 0.11
ACGTcount: A:0.39, C:0.38, G:0.09, T:0.15
Consensus pattern (34 bp):
TCCAACCAACACACAAGATGCTCACACGAGCCAA
Found at i:8659675 original size:27 final size:26
Alignment explanation
Indices: 8659638--8659749 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
8659628 AGCATGGCTG
* *
8659638 CCAGAACAGATAATGTGACAAAGTCA
1 CCAGAACAGATAATGTGACAGAGCCA
*
8659664 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGACAGAGCCA
* *
8659692 CTAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
* * *
8659719 CTAGATCAGATAATTGTGACATAGCCA
1 CCAGAACAGATAA-TGTGACAGAGCCA
8659746 CCAG
1 CCAG
8659750 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.72
28 15 0.20
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:8659729 original size:54 final size:54
Alignment explanation
Indices: 8659640--8659746 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 54
8659630 CATGGCTGCC
* *
8659640 AGAACAGATAATGTGACAAAGTCACCAGATACAGATAATCGTGGCAGAGCCACT
1 AGAACAGATAATGTGACAAAGCCACCAGATACAGATAATCGTGACAGAGCCACT
* * * * *
8659694 AGAACAGATATATGTGGCAGAGCCACTAGAT-CAGATAATTGTGACATAGCCAC
1 AGAACAGATA-ATGTGACAAAGCCACCAGATACAGATAATCGTGACAGAGCCAC
8659747 CAGGACGCTT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
54 29 0.64
55 16 0.36
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.19
Consensus pattern (54 bp):
AGAACAGATAATGTGACAAAGCCACCAGATACAGATAATCGTGACAGAGCCACT
Found at i:8662836 original size:40 final size:40
Alignment explanation
Indices: 8662777--8662860 Score: 134
Period size: 40 Copynumber: 2.1 Consensus size: 40
8662767 CTCAGCTTTC
*
8662777 ACTT-GTTGGCATGTCAGACATTTCCCTCCAAACTCCGTT
1 ACTTCGTTGGCATGTCAGACATTTCCCTACAAACTCCGTT
* *
8662816 ACTTCGTTGGTATTTCAGACATTTCCCTACAAACTCCGTT
1 ACTTCGTTGGCATGTCAGACATTTCCCTACAAACTCCGTT
8662856 ACTTC
1 ACTTC
8662861 TCATTTAAGT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
39 4 0.10
40 37 0.90
ACGTcount: A:0.21, C:0.30, G:0.13, T:0.36
Consensus pattern (40 bp):
ACTTCGTTGGCATGTCAGACATTTCCCTACAAACTCCGTT
Found at i:8667506 original size:27 final size:27
Alignment explanation
Indices: 8667476--8667582 Score: 119
Period size: 27 Copynumber: 3.9 Consensus size: 27
8667466 GGCTGCCAAA
* * *
8667476 ACAGATAATGTGACAGAGTCACTAGAT
1 ACAGATAATGTGGCAGAGCCACCAGAT
* *
8667503 ACAGACAATCGTGGTAGAGCCACCAGA-
1 ACAGATAAT-GTGGCAGAGCCACCAGAT
8667530 ACAGATATATGTGGCAGAGCCACCAGAT
1 ACAGATA-ATGTGGCAGAGCCACCAGAT
*
8667558 -CAGATAATTGTGGCATAGCCACCAG
1 ACAGATAA-TGTGGCAGAGCCACCAG
8667583 GACGCTTCCT
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
26 1 0.01
27 52 0.76
28 15 0.22
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.18
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGCCACCAGAT
Found at i:8667578 original size:54 final size:54
Alignment explanation
Indices: 8667475--8667582 Score: 137
Period size: 54 Copynumber: 2.0 Consensus size: 54
8667465 TGGCTGCCAA
* * *
8667475 AACAGATAATGTGACAGAGTCACTAGATACAGACAATCGTGGTAGAGCCACCAG
1 AACAGATAATGTGACAGAGCCACCAGATACAGACAATCGTGGCAGAGCCACCAG
* * * *
8667529 AACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAG
1 AACAGATA-ATGTGACAGAGCCACCAGATACAGACAATCGTGGCAGAGCCACCAG
8667583 GACGCTTCCT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
54 29 0.63
55 17 0.37
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (54 bp):
AACAGATAATGTGACAGAGCCACCAGATACAGACAATCGTGGCAGAGCCACCAG
Found at i:8670569 original size:30 final size:30
Alignment explanation
Indices: 8670535--8670592 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
8670525 TAGGTACTTC
8670535 CACACAGGT-GATCCACACGCCCATGTGTGA
1 CACACAGGTAGA-CCACACGCCCATGTGTGA
* *
8670565 CACACGGGTAGACCACACGCCCGTGTGT
1 CACACAGGTAGACCACACGCCCATGTGT
8670593 CATGGCCGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.24, C:0.34, G:0.26, T:0.16
Consensus pattern (30 bp):
CACACAGGTAGACCACACGCCCATGTGTGA
Found at i:8671523 original size:71 final size:71
Alignment explanation
Indices: 8671404--8671539 Score: 209
Period size: 71 Copynumber: 1.9 Consensus size: 71
8671394 GGATTCTTGG
* ** * *
8671404 GACATGTCATCGACACAGATAAGTGAGAGCCAGTGTAAGATTTGTCTGGAACGTGGCATCGGCCT
1 GACATGGCATCGACACAGATAAGTGAGAGCCAGTGTAAGACCTCTCTGGAACATGGCATCGGCCT
8671469 TGATAT
66 TGATAT
* *
8671475 GACATGGCATCGACACAGATAAGTGAGAGCCAGTGTAAGACCTCTCTGGGACATGGCATTGGCCT
1 GACATGGCATCGACACAGATAAGTGAGAGCCAGTGTAAGACCTCTCTGGAACATGGCATCGGCCT
8671540 CGATGCATGG
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
71 58 1.00
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (71 bp):
GACATGGCATCGACACAGATAAGTGAGAGCCAGTGTAAGACCTCTCTGGAACATGGCATCGGCCT
TGATAT
Found at i:8674882 original size:49 final size:49
Alignment explanation
Indices: 8674823--8674951 Score: 145
Period size: 49 Copynumber: 2.6 Consensus size: 49
8674813 TTGTTGTGTG
* * **
8674823 TCAGTGTAAGACTTGTCTAGGACATGGCATTGACAC-CGATAGATGTGA-
1 TCAGTGTAAGACCTGTCTAGGACATGGCATCGAC-CTCGATAGATGAAAC
* * * *
8674871 TCCAGTGTAAGACCTGTTTGGGACATGGCATCGGCCTCGATATATGAAAC
1 T-CAGTGTAAGACCTGTCTAGGACATGGCATCGACCTCGATAGATGAAAC
*
8674921 TCAGTGTAAGACCTGTCTAGGACACGGCATC
1 TCAGTGTAAGACCTGTCTAGGACATGGCATC
8674952 AACTTTAATG
Statistics
Matches: 67, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
48 2 0.03
49 64 0.96
50 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (49 bp):
TCAGTGTAAGACCTGTCTAGGACATGGCATCGACCTCGATAGATGAAAC
Found at i:8681419 original size:27 final size:27
Alignment explanation
Indices: 8681389--8681566 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
8681379 ATATTGAGCC
* *
8681389 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
8681416 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
8681443 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
8681471 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
8681498 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
8681525 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
8681552 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
8681567 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 102 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:8681528 original size:82 final size:81
Alignment explanation
Indices: 8681410--8681565 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
8681400 TGCTATATAA
* * *
8681410 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
8681475 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
8681492 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
8681556 CACTTAGTGC
65 CACTTAGTGC
8681566 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 19 0.29
82 47 0.71
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:8689467 original size:27 final size:27
Alignment explanation
Indices: 8689437--8689614 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
8689427 ATATTGAGCC
* *
8689437 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
8689464 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
8689491 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
8689519 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
8689546 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
8689573 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
8689600 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
8689615 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 102 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:8689576 original size:82 final size:81
Alignment explanation
Indices: 8689458--8689613 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
8689448 TGCTATATAA
* * *
8689458 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
8689523 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
8689540 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
8689604 CACTTAGTGC
65 CACTTAGTGC
8689614 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 19 0.29
82 47 0.71
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:8695371 original size:39 final size:40
Alignment explanation
Indices: 8695276--8695537 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
8695266 TTGAATGATG
*
8695276 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
8695314 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
8695355 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
8695394 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
8695433 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
8695472 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
8695511 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
8695538 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:8701621 original size:13 final size:13
Alignment explanation
Indices: 8701603--8701629 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8701593 GAAGTAATCA
8701603 CACACGGGCGTGT
1 CACACGGGCGTGT
8701616 CACACGGGCGTGT
1 CACACGGGCGTGT
8701629 C
1 C
8701630 CTTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:8708986 original size:20 final size:21
Alignment explanation
Indices: 8708942--8708993 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
8708932 AAGCTTGCAG
* **
8708942 CACGGGCGTGTCTTAGGGTCA
1 CACGGGTGTGTCTTAGGACCA
8708963 CACGGGTGTGTCTTA-GACCA
1 CACGGGTGTGTCTTAGGACCA
8708983 CACGGGTGTGT
1 CACGGGTGTGT
8708994 GTGTCTTGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.15, C:0.23, G:0.37, T:0.25
Consensus pattern (21 bp):
CACGGGTGTGTCTTAGGACCA
Found at i:8715747 original size:6 final size:6
Alignment explanation
Indices: 8715738--8715766 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
8715728 ACATACACAG
8715738 TCAGAT TCAGAT TCAGAT TCAGAT TCAGA
1 TCAGAT TCAGAT TCAGAT TCAGAT TCAGA
8715767 CCTATGTCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (6 bp):
TCAGAT
Found at i:8717920 original size:20 final size:20
Alignment explanation
Indices: 8717854--8717920 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
8717844 ATTTTAGTAA
*
8717854 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
** *
8717874 ACATGACCTGTATGCTATGC
1 ACATGATATGTATGATATGC
8717894 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
8717914 ACATGAT
1 ACATGAT
8717921 GTATTCATAA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:8718247 original size:31 final size:31
Alignment explanation
Indices: 8718211--8718274 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
8718201 CGTTTATAGT
* *
8718211 AAAGGCTTCGGCCTAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
8718242 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
8718273 AA
1 AA
8718275 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:8720553 original size:43 final size:43
Alignment explanation
Indices: 8720394--8720562 Score: 160
Period size: 43 Copynumber: 3.9 Consensus size: 43
8720384 CATAGGGTTC
* * *
8720394 CGATATGTGATTTCATGTAAGACCACATCTGGGACATTGGCAT
1 CGATATGTAATTACATGTAAGACCACGTCTGGGACATTGGCAT
* * * * * * *
8720437 TGATTTGTAATTTACGTTTAAGACCATGTTTGAGACATTGGCAT
1 CGATATGTAA-TTACATGTAAGACCACGTCTGGGACATTGGCAT
* * * * * *
8720481 C-ATTTATAAGTCCATGTAAGACCATGTCTGGGACAGTGGCAT
1 CGATATGTAATTACATGTAAGACCACGTCTGGGACATTGGCAT
* *
8720523 CGATATGTGATTACATGTAAGACTACGTCTGGGACATTGG
1 CGATATGTAATTACATGTAAGACCACGTCTGGGACATTGG
8720563 TGTTGTACGA
Statistics
Matches: 97, Mismatches: 27, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
42 27 0.28
43 44 0.45
44 26 0.27
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.33
Consensus pattern (43 bp):
CGATATGTAATTACATGTAAGACCACGTCTGGGACATTGGCAT
Found at i:8726065 original size:39 final size:40
Alignment explanation
Indices: 8725902--8726083 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
8725892 TTGAATGCTG
* * *
8725902 TCCGGGCTAAGTCCCGAAGGC-TT-GTGCTAAGTGAC-AATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAA-A
** * * *
8725941 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
**
8725981 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
8726021 TCCGGGTTAAGTCCCGAAGGCATTC-TGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
8726060 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
8726084 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 51 0.42
40 64 0.53
41 6 0.05
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:8726103 original size:79 final size:78
Alignment explanation
Indices: 8725974--8726118 Score: 182
Period size: 79 Copynumber: 1.8 Consensus size: 78
8725964 TTGTGCGAGA
* * ** ** * *
8725974 TACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAA
1 TACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAATCC-GGTTAAATCCCGAA
8726039 GGCATTCTGTGAGT
65 GGCATTCTGTGAGT
* * *
8726053 TACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATATCCGGTTAAATCCCGAAG
1 TACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAATCCGGTTAAATCCCGAAG
8726118 G
66 G
8726119 TACGTGATTT
Statistics
Matches: 55, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
78 15 0.27
79 40 0.73
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
TACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAATCCGGTTAAATCCCGAAG
GCATTCTGTGAGT
Found at i:8731683 original size:19 final size:19
Alignment explanation
Indices: 8731659--8731702 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
8731649 ATTTTGAAGT
*
8731659 TGAAAATACA-TGTTTGTTA
1 TGAAAA-ACAGTGTTTATTA
*
8731678 TGAAAAACAGTGTTTATTG
1 TGAAAAACAGTGTTTATTA
8731697 TGAAAA
1 TGAAAA
8731703 CTTATTTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.41, C:0.05, G:0.18, T:0.36
Consensus pattern (19 bp):
TGAAAAACAGTGTTTATTA
Found at i:8732274 original size:27 final size:27
Alignment explanation
Indices: 8732242--8732320 Score: 149
Period size: 27 Copynumber: 2.9 Consensus size: 27
8732232 GTACAATATA
8732242 TGTGGCAAAGCCACCAGTAACAGTAAT
1 TGTGGCAAAGCCACCAGTAACAGTAAT
8732269 TGTGGCAAAGCCACCAGTAACAGTAAT
1 TGTGGCAAAGCCACCAGTAACAGTAAT
*
8732296 TGTGGCAAAACCACCAGTAACAGTA
1 TGTGGCAAAGCCACCAGTAACAGTA
8732321 CTTTCTCCAT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.18
Consensus pattern (27 bp):
TGTGGCAAAGCCACCAGTAACAGTAAT
Found at i:8732519 original size:26 final size:26
Alignment explanation
Indices: 8732490--8732541 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
8732480 ACGGTCATTC
* *
8732490 TACCCTTCGGGGGTATTTCGATAATT
1 TACCCATCGAGGGTATTTCGATAATT
8732516 TACCCATCGAGGGTATTTCGATAATT
1 TACCCATCGAGGGTATTTCGATAATT
8732542 AAGGCCCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.37
Consensus pattern (26 bp):
TACCCATCGAGGGTATTTCGATAATT
Found at i:8736969 original size:11 final size:11
Alignment explanation
Indices: 8736949--8736982 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
8736939 AATTTTGAAC
8736949 TTACCGTTTCA
1 TTACCGTTTCA
*
8736960 TTACCTTTTC-
1 TTACCGTTTCA
8736970 TTACCGTTTCA
1 TTACCGTTTCA
8736981 TT
1 TT
8736983 TGTATAATAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.15, C:0.26, G:0.06, T:0.53
Consensus pattern (11 bp):
TTACCGTTTCA
Found at i:8737479 original size:32 final size:34
Alignment explanation
Indices: 8737401--8737481 Score: 85
Period size: 32 Copynumber: 2.4 Consensus size: 34
8737391 ACATTGTCAG
*
8737401 TCCAACCGAACACACAAGATGCTCACACGAGCCAA
1 TCCAACC-AACACACAAGATGCTCACAAGAGCCAA
** * * *
8737436 TCCCTCAAACACAC-A-ATGCTCATAAGAGCTAA
1 TCCAACCAACACACAAGATGCTCACAAGAGCCAA
8737468 TCCAACCAACACAC
1 TCCAACCAACACAC
8737482 CAAATAGAGT
Statistics
Matches: 37, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
32 25 0.68
33 1 0.03
34 7 0.19
35 4 0.11
ACGTcount: A:0.41, C:0.37, G:0.10, T:0.12
Consensus pattern (34 bp):
TCCAACCAACACACAAGATGCTCACAAGAGCCAA
Found at i:8738452 original size:20 final size:21
Alignment explanation
Indices: 8738414--8738452 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
8738404 GAAGTTAAAA
8738414 TGTTTTAATTTCACTTTTATT
1 TGTTTTAATTTCACTTTTATT
8738435 TGTTTTAATTTC-CTTTTA
1 TGTTTTAATTTCACTTTTA
8738453 ATTACAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.18, C:0.10, G:0.05, T:0.67
Consensus pattern (21 bp):
TGTTTTAATTTCACTTTTATT
Found at i:8744489 original size:215 final size:214
Alignment explanation
Indices: 8744106--8744538 Score: 785
Period size: 215 Copynumber: 2.0 Consensus size: 214
8744096 CATAGATGAT
* *
8744106 TGATAAACCATAATATATACATATTTTTACCCCGTGCTTGGCATATTTATGGATGATTTTTCCTT
1 TGATAAAACATAATATATACATATTTTTACCCCATGCTTGGCATATTTATGGATGATTTTTCCTT
8744171 GGTTTCATTGAATTTGATGCTCCTAATCCTTTAATTTCATGTTTTATACTTAGAAAAGCTTAGGA
66 GGTTTCATTGAATTTGATGCTCCTAATCCTTTAATTTCATGTTTTATACTTAGAAAAGCTTAGGA
*
8744236 TAGCAAAAAGAGTGAGAAATGGGCCAAAAACAGACAAATTAGGCCTAAATCAGTGTTTCACACGG
131 TAGCAAAAAGAGTGAGAAACGGGCCAAAAACAGACAAATTAGGCCTAAATCAGTGTTTCACACGG
8744301 GCTAGGCACTTCCACATGGG
196 G-TAGGCACTTCCACATGGG
*
8744321 TGATAAAATATAATATATACATATTTTTACCCCATGCTTGGCATATTTATGGATGATTTTTCCTT
1 TGATAAAACATAATATATACATATTTTTACCCCATGCTTGGCATATTTATGGATGATTTTTCCTT
* *
8744386 GGTTTCATTGAATTTGATGCTCCTAATCCTTTAATTTCGTGTTTTATACTTAGGAAAGCTTAGGA
66 GGTTTCATTGAATTTGATGCTCCTAATCCTTTAATTTCATGTTTTATACTTAGAAAAGCTTAGGA
* *
8744451 TAGCAAAAAGAGTGAGAAACGGGCCATAAACGGACAAATTAGGCCTAAATCAGTGTTTCACACGG
131 TAGCAAAAAGAGTGAGAAACGGGCCAAAAACAGACAAATTAGGCCTAAATCAGTGTTTCACACGG
8744516 GTAGGCACTTCCACATGGG
196 GTAGGCACTTCCACATGGG
8744535 TGAT
1 TGAT
8744539 CCACACGCCA
Statistics
Matches: 210, Mismatches: 8, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
214 22 0.10
215 188 0.90
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (214 bp):
TGATAAAACATAATATATACATATTTTTACCCCATGCTTGGCATATTTATGGATGATTTTTCCTT
GGTTTCATTGAATTTGATGCTCCTAATCCTTTAATTTCATGTTTTATACTTAGAAAAGCTTAGGA
TAGCAAAAAGAGTGAGAAACGGGCCAAAAACAGACAAATTAGGCCTAAATCAGTGTTTCACACGG
GTAGGCACTTCCACATGGG
Found at i:8751929 original size:21 final size:20
Alignment explanation
Indices: 8751885--8751929 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
8751875 ATAAGCCATG
* * *
8751885 AACACGGGCGTGGAGAACCT
1 AACACGGGCATGGAGAAACA
8751905 AACACGGGCATGGGAGAAACA
1 AACACGGGCAT-GGAGAAACA
8751926 AACA
1 AACA
8751930 AAAGTGTACA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.40, C:0.22, G:0.31, T:0.07
Consensus pattern (20 bp):
AACACGGGCATGGAGAAACA
Found at i:8752211 original size:19 final size:20
Alignment explanation
Indices: 8752173--8752213 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
8752163 ACCAGCCACC
* *
8752173 CTTTTTTTTCTCTTTTCTTT
1 CTTTATTTTCTCTTTCCTTT
8752193 CTTTATTTT-TCTTTCCTTT
1 CTTTATTTTCTCTTTCCTTT
8752212 CT
1 CT
8752214 CTCTTTTCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (20 bp):
CTTTATTTTCTCTTTCCTTT
Found at i:8752220 original size:19 final size:20
Alignment explanation
Indices: 8752178--8752221 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
8752168 CCACCCTTTT
* *
8752178 TTTTCTCTTTTCTTTCTTTA
1 TTTTCTCTTTCCTTTCTCTA
*
8752198 TTTT-TCTTTCCTTTCTCTC
1 TTTTCTCTTTCCTTTCTCTA
8752217 TTTTC
1 TTTTC
8752222 CCTTCTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.02, C:0.25, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTTCTCTTTCCTTTCTCTA
Found at i:8754225 original size:6 final size:6
Alignment explanation
Indices: 8754210--8754243 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
8754200 TTTCAACTTG
*
8754210 TTTTTC TTTTTA -TTTTA TTTTTA TTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
8754244 GCGTTTCTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:8754225 original size:12 final size:12
Alignment explanation
Indices: 8754210--8754243 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
8754200 TTTCAACTTG
*
8754210 TTTTTCTTTTTA
1 TTTTTATTTTTA
8754222 -TTTTATTTTTA
1 TTTTTATTTTTA
8754233 TTTTTATTTTT
1 TTTTTATTTTT
8754244 GCGTTTCTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTATTTTTA
Found at i:8754230 original size:17 final size:17
Alignment explanation
Indices: 8754210--8754242 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8754200 TTTCAACTTG
*
8754210 TTTTTCTTTTTATTTTA
1 TTTTTATTTTTATTTTA
8754227 TTTTTATTTTTATTTT
1 TTTTTATTTTTATTTT
8754243 TGCGTTTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.85
Consensus pattern (17 bp):
TTTTTATTTTTATTTTA
Found at i:8758918 original size:31 final size:31
Alignment explanation
Indices: 8758874--8758949 Score: 116
Period size: 31 Copynumber: 2.5 Consensus size: 31
8758864 TCATAAAGTA
*
8758874 TCACACGCTCGTGTAAGTGGGCCGTGTAGAC
1 TCACACGCCCGTGTAAGTGGGCCGTGTAGAC
* * *
8758905 TCACATGCCCGTGTAAGTGGGTCGTGTGGAC
1 TCACACGCCCGTGTAAGTGGGCCGTGTAGAC
8758936 TCACACGCCCGTGT
1 TCACACGCCCGTGT
8758950 GACATGTGGC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.24
Consensus pattern (31 bp):
TCACACGCCCGTGTAAGTGGGCCGTGTAGAC
Found at i:8766712 original size:55 final size:55
Alignment explanation
Indices: 8766652--8766756 Score: 142
Period size: 55 Copynumber: 1.9 Consensus size: 55
8766642 GCCGTGGGCA
8766652 ACACTGACTTATCAACACGGCCATGGCA-CACACCCGTGCT-GCCTACCCGTGGATG
1 ACACTGACTTATCAACACGGCCATGG-AGCACACCCGTG-TGGCCTACCCGTGGATG
* * * *
8766707 ACACTGTCTTTTTAACACGGCCATGGAGCACGCCCGTGTGGCCTACCCGT
1 ACACTGACTTATCAACACGGCCATGGAGCACACCCGTGTGGCCTACCCGT
8766757 ATACAACTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
54 2 0.05
55 42 0.95
ACGTcount: A:0.21, C:0.35, G:0.23, T:0.21
Consensus pattern (55 bp):
ACACTGACTTATCAACACGGCCATGGAGCACACCCGTGTGGCCTACCCGTGGATG
Found at i:8769205 original size:2 final size:2
Alignment explanation
Indices: 8769198--8769232 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8769188 GATGTTACAT
8769198 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
8769233 TTTTGGTCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:8771073 original size:13 final size:12
Alignment explanation
Indices: 8771044--8771069 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8771034 GTAATGGACA
8771044 TTGGACATTTAT
1 TTGGACATTTAT
8771056 TTGGACATTTAT
1 TTGGACATTTAT
8771068 TT
1 TT
8771070 TGGAGATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54
Consensus pattern (12 bp):
TTGGACATTTAT
Found at i:8772726 original size:49 final size:49
Alignment explanation
Indices: 8772621--8772937 Score: 205
Period size: 49 Copynumber: 6.6 Consensus size: 49
8772611 TGATGTGTTT
* * *
8772621 GCTAGTGTAAGACCTGTCTGGGACATGGCTTCTGCGCCAATAGATGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCGCCAAGAGATGAGA
* * * * *
8772670 GCCAGTGTAAGACCTGTTTGGGACACGGAATCGGC-CTCAAGATATGCA-A
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCGC-CAAGAGATG-AGA
** * *
8772719 GCTAGTGTAAGACCTGTCTGGGACATGGCATC-G-G-CTTGAG--GTGT
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCGCCAAGAGATGAGA
* * *
8772763 G-TATGTGTAAGACCTGTCTGGGACATGGCATCGAC-AC-AGATAAGTGAGA
1 GCTA-GTGTAAGACCTGTCTGGGACATGGCATCGGCGCCAAGA-GA-TGAGA
* * * ** * *
8772812 GCCAGTATAAGATCTGTCTGGGACATGGCATCGGC-CTTGATATATG-GAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCGC-CAAGAGATGAG-A
* * *
8772861 G-TCAGTGTAAGACCTGTCTGGGACATGGCATCGAC-AC-AGATAAGTGAGA
1 GCT-AGTGTAAGACCTGTCTGGGACATGGCATCGGCGCCAAGA-GA-TGAGA
*
8772910 GCCAGTGTAAGACCTGTCTGGGACATGG
1 GCTAGTGTAAGACCTGTCTGGGACATGG
8772938 TATTGGCCTC
Statistics
Matches: 208, Mismatches: 39, Indels: 42
0.72 0.13 0.15
Matches are distributed among these distances:
43 2 0.01
44 30 0.14
45 2 0.01
46 4 0.02
47 2 0.01
48 4 0.02
49 158 0.76
50 4 0.02
51 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.23
Consensus pattern (49 bp):
GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCGCCAAGAGATGAGA
Found at i:8772881 original size:142 final size:142
Alignment explanation
Indices: 8772625--8772893 Score: 375
Period size: 142 Copynumber: 1.9 Consensus size: 142
8772615 GTGTTTGCTA
* * * *
8772625 GTGTAAGACCTGTCTGGGACATGGCTTCTGCGCCAATAGATGAGAGCCAGTGTAAGACCTGTTTG
1 GTGTAAGACCTGTCTGGGACATGGCATCTGCGACAATAGATGAGAGCCAGTATAAGACCTGTCTG
8772690 GGACACGGAATCGGCCTCAAGATATGCAAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCT
66 GGACACGGAATCGGCCTCAAGATATGCAAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCT
8772755 TGAGGTGTGTAT
131 TGAGGTGTGTAT
*
8772767 GTGTAAGACCTGTCTGGGACATGGCATC-GAC-ACAGATA-AGTGAGAGCCAGTATAAGATCTGT
1 GTGTAAGACCTGTCTGGGACATGGCATCTG-CGACA-ATAGA-TGAGAGCCAGTATAAGACCTGT
* * ** * *
8772829 CTGGGACATGGCATCGGCCTTGATATATGGAAG-TCAGTGTAAGACCTGTCTGGGACATGGCATC
63 CTGGGACACGGAATCGGCCTCAAGATATGCAAGCT-AGTGTAAGACCTGTCTGGGACATGGCATC
8772893 G
127 G
8772894 ACACAGATAA
Statistics
Matches: 112, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
141 5 0.04
142 107 0.96
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.24
Consensus pattern (142 bp):
GTGTAAGACCTGTCTGGGACATGGCATCTGCGACAATAGATGAGAGCCAGTATAAGACCTGTCTG
GGACACGGAATCGGCCTCAAGATATGCAAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCT
TGAGGTGTGTAT
Found at i:8772891 original size:98 final size:98
Alignment explanation
Indices: 8772726--8772989 Score: 358
Period size: 98 Copynumber: 2.7 Consensus size: 98
8772716 CAAGCTAGTG
* * *
8772726 TAAGACCTGTCTGGGACATGGCATCGG-CTTGAGGTGT-GTA-T--GTGTAAGACCTGTCTGGGA
1 TAAGACCTGTCTGGGACATGGCATCGGCCTTGATGTATGGAAGTCAGTGTAAGACCTGTCTGGGA
8772786 CATGGCATCGACACAGATAAGTGAGAGCCAGTA
66 CATGGCATCGACACAGATAAGTGAGAGCCAGTA
* *
8772819 TAAGATCTGTCTGGGACATGGCATCGGCCTTGATATATGGAAGTCAGTGTAAGACCTGTCTGGGA
1 TAAGACCTGTCTGGGACATGGCATCGGCCTTGATGTATGGAAGTCAGTGTAAGACCTGTCTGGGA
*
8772884 CATGGCATCGACACAGATAAGTGAGAGCCAGTG
66 CATGGCATCGACACAGATAAGTGAGAGCCAGTA
* * * * * * * * *
8772917 TAAGACCTGTCTGGGACATGGTATTGGCCTCGATGCATGGAAGTCAATTTAATACTTGTTTGGGA
1 TAAGACCTGTCTGGGACATGGCATCGGCCTTGATGTATGGAAGTCAGTGTAAGACCTGTCTGGGA
8772982 CATGGCAT
66 CATGGCAT
8772990 TTACTTAGAT
Statistics
Matches: 149, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
93 26 0.17
94 7 0.05
95 2 0.01
96 1 0.01
98 113 0.76
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (98 bp):
TAAGACCTGTCTGGGACATGGCATCGGCCTTGATGTATGGAAGTCAGTGTAAGACCTGTCTGGGA
CATGGCATCGACACAGATAAGTGAGAGCCAGTA
Found at i:8776289 original size:106 final size:105
Alignment explanation
Indices: 8776086--8776289 Score: 241
Period size: 107 Copynumber: 1.9 Consensus size: 105
8776076 CATGCGAGAC
* * *
8776086 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGGGATATACAAGCTAGTGCAAGAC
1 GAGAGCCAGTGTAAGACATGTCTGGAACATGCATCGGCCTC-GGATATACAAACTAGTGCAAGAC
* * * * * **
8776151 CTGTTTGGGACATGGCGTTAGCTTATTGTGTGCCGATAGAT
65 CTGTCTGGGACACGGCATCAACTTATAATGTGCCGATAGAT
* * *
8776192 GAGAGCCAGTGTAAGACCTGTCTGGAACATGGCATCGGCCTC-GATATATGAAACTCAGTGTAAG
1 GAGAGCCAGTGTAAGACATGTCTGGAACAT-GCATCGGCCTCGGATATA-CAAACT-AGTGCAAG
8776256 ACCTGTCTGGGACACGGCATCAACTT-TAATGTGC
63 ACCTGTCTGGGACACGGCATCAACTTATAATGTGC
8776290 TAGCTAATGT
Statistics
Matches: 82, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
105 6 0.07
106 37 0.45
107 39 0.48
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (105 bp):
GAGAGCCAGTGTAAGACATGTCTGGAACATGCATCGGCCTCGGATATACAAACTAGTGCAAGACC
TGTCTGGGACACGGCATCAACTTATAATGTGCCGATAGAT
Found at i:8777581 original size:20 final size:21
Alignment explanation
Indices: 8777542--8777581 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
8777532 GTCATGTGAG
* *
8777542 CCACACGGGCATATTGCCCTT
1 CCACACGGACATAGTGCCCTT
8777563 CCACACGGACAT-GTGCCCT
1 CCACACGGACATAGTGCCCT
8777582 ATTTCAAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.20, C:0.40, G:0.20, T:0.20
Consensus pattern (21 bp):
CCACACGGACATAGTGCCCTT
Found at i:8781622 original size:40 final size:40
Alignment explanation
Indices: 8781577--8781801 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
8781567 CTTGCACAAG
* * *
8781577 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
8781617 GCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * * *
8781657 GCCTTCGAGTTTTAGCCCGGATATAATCGCTAGCGCAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
8781697 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * *
8781737 GCCTTCGGATCTTAGCCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
* *
8781778 GCCTTTGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
8781802 CATTCGAATA
Statistics
Matches: 156, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 126 0.81
41 29 0.19
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:8781690 original size:80 final size:79
Alignment explanation
Indices: 8781541--8781801 Score: 267
Period size: 80 Copynumber: 3.3 Consensus size: 79
8781531 CTCAAGTAAT
* * * * * * * *
8781541 CTTCTGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTC-GGTCTTAGCCCGGATATAGT
*
8781604 CACTAGCATAAATGC
65 CACTAGCACAAATGC
* * * *
8781619 CTTCGGGACTTAGCCCGGATATAATC-GCTAGCACAAATGCCTTCGAGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATAT-AGCAACTAGCACAAATGCCTTCG-GTCTTAGCCCGGATATAG
* *
8781683 TCGCTAGCGCAAATGC
64 TCACTAGCACAAATGC
* * * *
8781699 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGCCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGG-TCTTAGCCCGGATATAGT
*
8781764 CACCTAGCACAAAAGC
65 CA-CTAGCACAAATGC
*
8781780 CTTTGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
8781802 CATTCGAATA
Statistics
Matches: 150, Mismatches: 26, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
78 11 0.07
79 18 0.12
80 90 0.60
81 31 0.21
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGTCTTAGCCCGGATATAGTC
ACTAGCACAAATGC
Found at i:8789769 original size:40 final size:40
Alignment explanation
Indices: 8789714--8789898 Score: 183
Period size: 40 Copynumber: 4.6 Consensus size: 40
8789704 CTTTCACAAG
* ** *
8789714 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAAT
* *
8789754 GCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAAT
* * * *
8789794 GCCTTCGGGTCTTAGCACGGATA-AAGCAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCACAAAT
*** * * * *
8789834 GCCTTCAAATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAATCA-CTAGCACAAAT
*
8789875 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
8789899 CATTCGAATA
Statistics
Matches: 113, Mismatches: 29, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
39 3 0.03
40 82 0.73
41 28 0.25
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAAT
Found at i:8792963 original size:27 final size:27
Alignment explanation
Indices: 8792933--8793110 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
8792923 ATATTGAGTC
* *
8792933 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
8792960 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
8792987 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
8793015 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
8793042 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
8793069 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
8793096 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
8793111 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:8793072 original size:82 final size:81
Alignment explanation
Indices: 8792954--8793109 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
8792944 TGCTATATAA
* *
8792954 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
8793019 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
8793036 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
8793100 CACTTAGTGC
65 CACTTAGTGC
8793110 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:8802349 original size:43 final size:43
Alignment explanation
Indices: 8802288--8802375 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
8802278 TATAAAGTGG
8802288 ATGCGTTAGTGATTGCATACGTTACATGATATTTTGGATTCGT
1 ATGCGTTAGTGATTGCATACGTTACATGATATTTTGGATTCGT
8802331 ATGCGTTAGTGATTGCATACGTTACATGATATTTTGGATTCGT
1 ATGCGTTAGTGATTGCATACGTTACATGATATTTTGGATTCGT
8802374 AT
1 AT
8802376 TTAGATGTTG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.24, C:0.11, G:0.23, T:0.42
Consensus pattern (43 bp):
ATGCGTTAGTGATTGCATACGTTACATGATATTTTGGATTCGT
Found at i:8802543 original size:16 final size:16
Alignment explanation
Indices: 8802522--8802558 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
8802512 GGAAGATGTT
8802522 ATATGGATTGTGGTTG
1 ATATGGATTGTGGTTG
8802538 ATATGGATTGTGGTTG
1 ATATGGATTGTGGTTG
8802554 ATATG
1 ATATG
8802559 ATTTTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.22, C:0.00, G:0.35, T:0.43
Consensus pattern (16 bp):
ATATGGATTGTGGTTG
Found at i:8803432 original size:48 final size:48
Alignment explanation
Indices: 8803368--8803649 Score: 296
Period size: 48 Copynumber: 5.9 Consensus size: 48
8803358 ATGTGAGTAT
* *
8803368 TGAGATCCCGTATAAGACCATATCTGTGATATGGCATCGGCATCAAAA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATCAAAA
* * * *
8803416 TGAGATCTCGTGTAAGACAATATCTAGGATATGGCATCAGCATCAAAA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATCAAAA
* ** * *
8803464 TGAAATCCCGTGTAAGACCATATCTGGGATATGGCATCAACATCGAGA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATCAAAA
* * * * * **
8803512 TGAGATCCCATGTAAAATCATATTTGGGATATGGCATTGGCATCAGTA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATCAAAA
* * ** *
8803560 TGA-AGTCCCATGTAAGACCATATCTGGGATATGGCATTGGCATTGATA
1 TGAGA-TCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATCAAAA
* * * * *
8803608 TGAGGTCCCGTATAAGACCATGTTTGGGACATGGCATCGGCA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCA
8803650 CCATTATGAG
Statistics
Matches: 195, Mismatches: 37, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
47 1 0.01
48 194 0.99
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (48 bp):
TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATCAAAA
Found at i:8803611 original size:96 final size:96
Alignment explanation
Indices: 8803380--8803735 Score: 328
Period size: 96 Copynumber: 3.8 Consensus size: 96
8803370 AGATCCCGTA
* * * * * * *
8803380 TAAGACCATATCTGTGATATGGCATCGGCATCAAAATGAGATCTCGTGTAAGACAATATCTAGGA
1 TAAGACCATATCTGGGATATGGCATCGGCATCGATATGAGATCCCATGTAAGACCATATCTGGGA
* * * * *
8803445 TATGGCATCAGCATCAAAATGAAATCCCGTG
66 CATGGCATCGGCATCAATATGAAGTCCCATG
** * * * *
8803476 TAAGACCATATCTGGGATATGGCATCAACATCGAGATGAGATCCCATGTAAAATCATATTTGGGA
1 TAAGACCATATCTGGGATATGGCATCGGCATCGATATGAGATCCCATGTAAGACCATATCTGGGA
* * *
8803541 TATGGCATTGGCATCAGTATGAAGTCCCATG
66 CATGGCATCGGCATCAATATGAAGTCCCATG
* * * * * * *
8803572 TAAGACCATATCTGGGATATGGCATTGGCATTGATATGAGGTCCCGTATAAGACCATGTTTGGGA
1 TAAGACCATATCTGGGATATGGCATCGGCATCGATATGAGATCCCATGTAAGACCATATCTGGGA
* * * *
8803637 CATGGCATCGGCACCATTATG-AGGCTTCATG
66 CATGGCATCGGCATCAATATGAAGTC-CCATG
* * * * *
8803668 TAAGACCATAGCTGGG-T-T-G--TTGGCATCGATGTGAGATCTCATGTAAGACCATGTCTGGGA
1 TAAGACCATATCTGGGATATGGCATCGGCATCGATATGAGATCCCATGTAAGACCATATCTGGGA
8803728 CATGGCAT
66 CATGGCAT
8803736 TGAAATCTTT
Statistics
Matches: 216, Mismatches: 43, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
91 42 0.19
93 1 0.00
94 1 0.00
95 4 0.02
96 168 0.78
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (96 bp):
TAAGACCATATCTGGGATATGGCATCGGCATCGATATGAGATCCCATGTAAGACCATATCTGGGA
CATGGCATCGGCATCAATATGAAGTCCCATG
Found at i:8805475 original size:31 final size:31
Alignment explanation
Indices: 8805453--8805524 Score: 135
Period size: 31 Copynumber: 2.3 Consensus size: 31
8805443 CGGGCTGAGG
8805453 ACACGGGCGTGTGTGACCACACGGCCTACCC
1 ACACGGGCGTGTGTGACCACACGGCCTACCC
*
8805484 ACACGGGCGTGTGTGACCACACGACCTACCC
1 ACACGGGCGTGTGTGACCACACGGCCTACCC
8805515 ACACGGGCGT
1 ACACGGGCGT
8805525 ATGACTCTCC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.21, C:0.38, G:0.29, T:0.12
Consensus pattern (31 bp):
ACACGGGCGTGTGTGACCACACGGCCTACCC
Found at i:8807907 original size:138 final size:138
Alignment explanation
Indices: 8807748--8808448 Score: 1093
Period size: 138 Copynumber: 5.1 Consensus size: 138
8807738 TAGAAAAAGG
*
8807748 AATTATATTATTTTCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTAA
1 AATTATATTCTTTTCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTAA
* * * *
8807813 TATAACTGTTTATATTAATAAATTCGGTAAAATATATAAAATTACTATTTTGTATGAATCAAATT
66 TATAATTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
8807878 CATATATT
131 CATATATT
* *
8807886 AATTATATTCTTTTCAAAAGAATATTAA-TTTCTATGTCTTTTATATTTTGA-TCAAAATTAGTT
1 AATTATATTCTTTTCAAAAGAATATTAATTTTC-ATGTCTTTTATATTTTGACT-GAAATTAATT
* *
8807949 AATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAGTCAAA
64 AATATAATTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAA
8808014 TTCATATATATT
129 TTC--ATATATT
* * *
8808026 AATTATATTCTTTTCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGGCTGAAATTAATTCA
1 AATTATATTCTTTTCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTAA
* *
8808091 TATAACTATTTATATTAATAAATTCGGTAAAATATATACAACTAATATTTTGTATGAATCAAATT
66 TATAATTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
8808156 CATATATT
131 CATATATT
* * * * * * *
8808164 ACTTATATTCTTTCCAAAAGAATATCAATTTCCATATCTTTTATATTTTGACCGAAATTAATTCA
1 AATTATATTCTTTTCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTAA
* *
8808229 TATAATTATTTATATTAATAAATTCTGTAAAATATATACAAGTAATATTTTGTATGAATCAAATT
66 TATAATTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
8808294 CATATATT
131 CATATATT
*
8808302 AATTATATTC-TTTCTAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTA
1 AATTATATTCTTTTC-AAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTA
*
8808366 ATATAATTATTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTTGTATGAATCAAA
65 ATATAATTATTTATATTAATAAATTCGGTAAAATATATACAATTAATA-TTTTGTATGAATCAAA
*
8808431 TTTATATATT
129 TTCATATATT
8808441 AATTATAT
1 AATTATAT
8808449 CTATGTTCTC
Statistics
Matches: 521, Mismatches: 34, Indels: 15
0.91 0.06 0.03
Matches are distributed among these distances:
137 8 0.02
138 353 0.68
139 33 0.06
140 123 0.24
141 4 0.01
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.46
Consensus pattern (138 bp):
AATTATATTCTTTTCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTAA
TATAATTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATT
Found at i:8808159 original size:67 final size:67
Alignment explanation
Indices: 8808085--8808310 Score: 180
Period size: 67 Copynumber: 3.3 Consensus size: 67
8808075 GGCTGAAATT
* *
8808085 AATTCATATAACTATTTATATTAATAAATTCGGTAAAATATATACAACTAATATTTTGTATGAAT
1 AATTCATATAATTATTTATATTAATAAATTCCGTAAAATATATACAACTAATATTTTGTATGAAT
8808150 CA
66 CA
* * ** * *
8808152 AATTCATAT-ATTACTTATATT-CT---TTCCAAAAGAATATCAATTTCCATATCTTTTATATTT
1 AATTCATATAATTATTTATATTAATAAATTCCGTAA-AATAT--A--TACA-A-C--TAATATTT
* *
8808212 TG-ACCGAAAT-T
57 TGTA-TG-AATCA
* *
8808223 AATTCATATAATTATTTATATTAATAAATTCTGTAAAATATATACAAGTAATATTTTGTATGAAT
1 AATTCATATAATTATTTATATTAATAAATTCCGTAAAATATATACAACTAATATTTTGTATGAAT
8808288 CA
66 CA
*
8808290 AATTCATAT-ATTAATTATATT
1 AATTCATATAATTATTTATATT
8808311 CTTTCTAAAA
Statistics
Matches: 120, Mismatches: 21, Indels: 37
0.67 0.12 0.21
Matches are distributed among these distances:
62 5 0.04
63 5 0.04
65 2 0.02
66 24 0.20
67 31 0.26
68 2 0.02
69 1 0.01
70 2 0.02
71 22 0.18
72 14 0.12
73 2 0.02
75 5 0.04
76 5 0.04
ACGTcount: A:0.42, C:0.10, G:0.05, T:0.44
Consensus pattern (67 bp):
AATTCATATAATTATTTATATTAATAAATTCCGTAAAATATATACAACTAATATTTTGTATGAAT
CA
Found at i:8808245 original size:278 final size:276
Alignment explanation
Indices: 8807748--8808448 Score: 1134
Period size: 278 Copynumber: 2.5 Consensus size: 276
8807738 TAGAAAAAGG
*
8807748 AATTATATTATTTTCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTAA
1 AATTATATTCTTTTCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTAA
* * *
8807813 TATAACTGTTTATATTAATAAATTCGGTAAAATATATAAAATTACTATTTTGTATGAATCAAATT
66 TATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
* * * * *
8807878 CATATATTAATTATATTCTTTTCAAAAGAATATTAATTTCTATGTCTTTTATATTTTGATCAAAA
131 CATATATTAATTATATTCTTTCCAAAAGAATATCAATTTCCATATCTTTTATATTTTGACCAAAA
* * *
8807943 TTAGTTAATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGA
196 TTAATTAATATAATTATTTATATTAATAAATTCGGTAAAATATATACAAGTAATATTTTGTATGA
*
8808008 GTCAAATTCATATATATT
261 ATCAAATTC--ATATATT
* * *
8808026 AATTATATTCTTTTCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGGCTGAAATTAATTCA
1 AATTATATTCTTTTCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTAA
*
8808091 TATAACTATTTATATTAATAAATTCGGTAAAATATATACAACTAATATTTTGTATGAATCAAATT
66 TATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
* *
8808156 CATATATTACTTATATTCTTTCCAAAAGAATATCAATTTCCATATCTTTTATATTTTGACCGAAA
131 CATATATTAATTATATTCTTTCCAAAAGAATATCAATTTCCATATCTTTTATATTTTGACCAAAA
* *
8808221 TTAATTCATATAATTATTTATATTAATAAATTCTGTAAAATATATACAAGTAATATTTTGTATGA
196 TTAATTAATATAATTATTTATATTAATAAATTCGGTAAAATATATACAAGTAATATTTTGTATGA
8808286 ATCAAATTCATATATT
261 ATCAAATTCATATATT
*
8808302 AATTATATTC-TTTCTAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTA
1 AATTATATTCTTTTC-AAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTA
* *
8808366 ATATAATTATTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTTGTATGAATCAAA
65 ATATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATA-TTTTGTATGAATCAAA
*
8808431 TTTATATATTAATTATAT
129 TTCATATATTAATTATAT
8808449 CTATGTTCTC
Statistics
Matches: 391, Mismatches: 30, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
275 4 0.01
276 107 0.27
277 32 0.08
278 248 0.63
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.46
Consensus pattern (276 bp):
AATTATATTCTTTTCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTAA
TATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATTAATTATATTCTTTCCAAAAGAATATCAATTTCCATATCTTTTATATTTTGACCAAAA
TTAATTAATATAATTATTTATATTAATAAATTCGGTAAAATATATACAAGTAATATTTTGTATGA
ATCAAATTCATATATT
Found at i:8809548 original size:20 final size:21
Alignment explanation
Indices: 8809518--8809570 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
8809508 TCGAAACCAT
*
8809518 TATATCAATACTTA-TTGAAAA
1 TATATCGATACTTAGTT-AAAA
8809539 -ATATCGATACTTAGTTAAAA
1 TATATCGATACTTAGTTAAAA
*
8809559 TGTATCGATACT
1 TATATCGATACT
8809571 CTTGGGACTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.38
Consensus pattern (21 bp):
TATATCGATACTTAGTTAAAA
Found at i:8813691 original size:21 final size:21
Alignment explanation
Indices: 8813665--8813705 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
8813655 GGAGTCTTTT
8813665 ACTTAGTTAAATATGCATTTG
1 ACTTAGTTAAATATGCATTTG
*
8813686 ACTTAGTTAATTATGCATTT
1 ACTTAGTTAAATATGCATTT
8813706 TACTGATCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.10, G:0.12, T:0.46
Consensus pattern (21 bp):
ACTTAGTTAAATATGCATTTG
Found at i:8819934 original size:138 final size:138
Alignment explanation
Indices: 8819681--8819941 Score: 407
Period size: 138 Copynumber: 1.9 Consensus size: 138
8819671 ATGTCATTAG
* * *
8819681 GGTTACCATGTTTCAGGTGCTGGTCCTTAATATCCTACCGATGGCTAAGGTCCGGCATTAGTTGC
1 GGTTACCATGTTTCAGGTGCTGGTCCTGAATATCCTACCAATGGCTAAGGTCCGACATTAGTTGC
* *
8819746 GGATACTCATCATCTTGTGTGAGCAACATCATATAGCTTACATTCTGACCGTTAGCTTGTGTGAG
66 GAATACTCATCAACTTGTGTGAGCAACATCATATAGCTTACATTCTGACCGTTAGCTTGTGTGAG
8819811 CAGACCCA
131 CAGACCCA
* * *
8819819 GGTTACCATGTTTCAGGTGCTGGTCCTGAATGTCCTACCAATGGCTGAGGTCTGACATTAGTTGC
1 GGTTACCATGTTTCAGGTGCTGGTCCTGAATATCCTACCAATGGCTAAGGTCCGACATTAGTTGC
* * *
8819884 GAATACTCATTAACTTGTGTGAGCAGCATCATGTAGCTTACATT-TCGACCGTTAGCTT
66 GAATACTCATCAACTTGTGTGAGCAACATCATATAGCTTACATTCT-GACCGTTAGCTT
8819942 ATATGAGTAG
Statistics
Matches: 111, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
137 1 0.01
138 110 0.99
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.32
Consensus pattern (138 bp):
GGTTACCATGTTTCAGGTGCTGGTCCTGAATATCCTACCAATGGCTAAGGTCCGACATTAGTTGC
GAATACTCATCAACTTGTGTGAGCAACATCATATAGCTTACATTCTGACCGTTAGCTTGTGTGAG
CAGACCCA
Found at i:8849200 original size:43 final size:44
Alignment explanation
Indices: 8849139--8849253 Score: 155
Period size: 44 Copynumber: 2.6 Consensus size: 44
8849129 AGTTCGTACA
8849139 ATGCCAAC-GTCCCAGACGTGGTCTTACATGT-AATCA-AATATCG
1 ATGCC-ACTGTCCCAGACGTGGTCTTACATGTAAATCATAA-ATCG
*
8849182 ATGCCACTGTCCCAGACGTGGTCTTACATGTAAATCATAAGTCG
1 ATGCCACTGTCCCAGACGTGGTCTTACATGTAAATCATAAATCG
* **
8849226 ATGCCAATGTCTAAGACGTGGTCTTACA
1 ATGCCACTGTCCCAGACGTGGTCTTACA
8849254 CGATAACACA
Statistics
Matches: 65, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
42 2 0.03
43 28 0.43
44 33 0.51
45 2 0.03
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (44 bp):
ATGCCACTGTCCCAGACGTGGTCTTACATGTAAATCATAAATCG
Found at i:8851000 original size:6 final size:6
Alignment explanation
Indices: 8850989--8851044 Score: 76
Period size: 6 Copynumber: 9.3 Consensus size: 6
8850979 CCTGTAATAG
* * *
8850989 CATATA CATATA CATATA CATATA CAAAAA CATATA CATATA CAAATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
*
8851037 TATATA CA
1 CATATA CA
8851045 CATCATTCAA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.55, C:0.16, G:0.00, T:0.29
Consensus pattern (6 bp):
CATATA
Found at i:8851012 original size:18 final size:18
Alignment explanation
Indices: 8850989--8851044 Score: 85
Period size: 18 Copynumber: 3.1 Consensus size: 18
8850979 CCTGTAATAG
*
8850989 CATATACATATACATATA
1 CATATACAAATACATATA
*
8851007 CATATACAAAAACATATA
1 CATATACAAATACATATA
*
8851025 CATATACAAATATATATA
1 CATATACAAATACATATA
8851043 CA
1 CA
8851045 CATCATTCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.55, C:0.16, G:0.00, T:0.29
Consensus pattern (18 bp):
CATATACAAATACATATA
Found at i:8853164 original size:47 final size:48
Alignment explanation
Indices: 8853091--8853315 Score: 230
Period size: 47 Copynumber: 4.8 Consensus size: 48
8853081 AGGGTAAGGT
* *
8853091 GCCGATGCCATGTCCTAGACACGGTCTTACACTGGCTCATATCTC-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAA
* * * *
8853138 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ACCATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-TATCTCGAA
* * * *
8853186 GCCGATG-CATGTCCCAGACAT-GTCTTACATTGGTTTATATCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAA
* * * * *
8853232 GTCGATG-CATGTCCCAGACAT-GTCTTACACTAGCCCTTGTCTC-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAA
**
8853277 TGCCGATGCCATGTCTTAGACATGGTCTTACACTGGCTC
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC
8853316 TCATAATGTG
Statistics
Matches: 145, Mismatches: 27, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
45 1 0.01
46 59 0.41
47 65 0.45
48 20 0.14
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAA
Found at i:8853228 original size:46 final size:46
Alignment explanation
Indices: 8853091--8853356 Score: 186
Period size: 47 Copynumber: 5.7 Consensus size: 46
8853081 AGGGTAAGGT
* * * * *
8853091 GCCGATGCCATGTCCTAGACACGGTCTTACACTGGCTCATATCTCAA
1 GCCGATGCCATGTCCCAGACA-TGTCTTACACTGGATTATATCTCGA
* * *
8853138 GTCGATGCCATGTCCCAGACATGGTCTTACACT-GACTACCATCTCGTA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGATTA-TATCTCG-A
* *
8853186 GCCGATG-CATGTCCCAGACATGTCTTACATTGGTTTATATCTCGA
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGATTATATCTCGA
* *** * *
8853231 GGTCGATG-CATGTCCCAGACATGTCTTACACTAGCCCT-TGTCTCAA
1 -GCCGATGCCATGTCCCAGACATGTCTTACACT-GGATTATATCTCGA
** * *
8853277 TGCCGATGCCATGTCTTAGACATGGTCTTACACTGGCTCTCATAATGT-G-
1 -GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGAT-T-AT-ATCTCGA
* *
8853326 GCCAATG-CATGTCCTAGACATGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGTCTTACACT
8853357 AGCTCACACA
Statistics
Matches: 176, Mismatches: 31, Indels: 25
0.76 0.13 0.11
Matches are distributed among these distances:
45 1 0.01
46 68 0.39
47 80 0.45
48 24 0.14
50 1 0.01
51 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (46 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTGGATTATATCTCGA
Found at i:8853351 original size:140 final size:141
Alignment explanation
Indices: 8853093--8853354 Score: 343
Period size: 140 Copynumber: 1.9 Consensus size: 141
8853083 GGTAAGGTGC
* * * *
8853093 CGATGCCATGTCCTAGACACGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAGAC
1 CGATGCCATGTCCCAGACACGGTCTTACACTAGCCCATATCTCAAGCCGATGCCATGTCCCAGAC
* *
8853158 ATGGTCTTACACTGACTACCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACATTGGTTTA
66 ATGGTCTTACACTGACTACCATATCGTAGCCAATGCATGTCCCAGACATGTCTTACATTGGTTTA
8853223 TATCTCGAGGT
131 TATCTCGAGGT
* * * **
8853234 CGATG-CATGTCCCAGACA-TGTCTTACACTAGCCCTTGTCTCAATGCCGATGCCATGTCTTAGA
1 CGATGCCATGTCCCAGACACGGTCTTACACTAGCCCATATCTCAA-GCCGATGCCATGTCCCAGA
* * *
8853297 CATGGTCTTACACTGGCT-CTCATAAT-GTGGCCAATGCATGTCCTAGACATGTCTTACA
65 CATGGTCTTACACTGACTAC-CAT-ATCGTAGCCAATGCATGTCCCAGACATGTCTTACA
8853355 CTAGCTCACA
Statistics
Matches: 104, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
139 21 0.20
140 77 0.74
141 6 0.06
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (141 bp):
CGATGCCATGTCCCAGACACGGTCTTACACTAGCCCATATCTCAAGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTGACTACCATATCGTAGCCAATGCATGTCCCAGACATGTCTTACATTGGTTTA
TATCTCGAGGT
Found at i:8854820 original size:4 final size:4
Alignment explanation
Indices: 8854782--8854808 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
8854772 TAACTAAAGA
8854782 TAAT TAAT TAAT TAAT TAAT TAAT TAA
1 TAAT TAAT TAAT TAAT TAAT TAAT TAA
8854809 AGCTTAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
TAAT
Found at i:8854830 original size:15 final size:13
Alignment explanation
Indices: 8854785--8854840 Score: 51
Period size: 15 Copynumber: 3.9 Consensus size: 13
8854775 CTAAAGATAA
8854785 TTAATTAATTAA-
1 TTAATTAATTAAG
8854797 TTAATTAATTAAAG
1 TTAATTAATT-AAG
8854811 CTTAATTAATCTAATG
1 -TTAATTAAT-TAA-G
8854827 TTAAGCTTAATTAA
1 TTAA--TTAATTAA
8854841 CAAAGTTAGT
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
12 10 0.27
13 2 0.05
15 15 0.41
16 5 0.14
17 5 0.14
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (13 bp):
TTAATTAATTAAG
Found at i:8854834 original size:21 final size:19
Alignment explanation
Indices: 8854782--8854840 Score: 70
Period size: 21 Copynumber: 3.2 Consensus size: 19
8854772 TAACTAAAGA
8854782 TAATTAATT-AA--TTAAT
1 TAATTAATTAAAGCTTAAT
8854798 TAATTAATTAAAGCTTAAT
1 TAATTAATTAAAGCTTAAT
*
8854817 TAATCTAATGTTAAGCTTAAT
1 TAAT-TAAT-TAAAGCTTAAT
8854838 TAA
1 TAA
8854841 CAAAGTTAGT
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
16 9 0.24
17 2 0.05
19 9 0.24
20 4 0.11
21 13 0.35
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (19 bp):
TAATTAATTAAAGCTTAAT
Found at i:8855649 original size:21 final size:19
Alignment explanation
Indices: 8855619--8855680 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 19
8855609 TATACTAGAT
8855619 AGGCCAAGTACAAATACTTG
1 AGGCCAAGTAC-AATACTTG
* *
8855639 AGGACTAAGTATCAATACTTAT
1 AGG-CCAAGTA-CAATACTT-G
8855661 AGGCCAAGTACCAATACTTG
1 AGGCCAAGTA-CAATACTTG
8855681 CCTCTCAAGT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
20 3 0.09
21 27 0.79
22 4 0.12
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (19 bp):
AGGCCAAGTACAATACTTG
Found at i:8857700 original size:83 final size:83
Alignment explanation
Indices: 8857561--8857719 Score: 255
Period size: 83 Copynumber: 1.9 Consensus size: 83
8857551 AGTATTTCAC
* * * * *
8857561 TGTAACACCCCTAACCCCTCTCTATCGTTAGATTAAGGTCACGGGCATTACTAACCAATTAGAAC
1 TGTAACACCCCTAACCCCTCTCCATCATCAGATTAAGGTCACAGGCATTACTAACCAATCAGAAC
8857626 ATTTAATTTCAAACTAAA
66 ATTTAATTTCAAACTAAA
* *
8857644 TGTAACACCCCTGACCCCTCTCCATCATCAGATTAGGGTCACAGGCATTACTAACCAATCAGAAC
1 TGTAACACCCCTAACCCCTCTCCATCATCAGATTAAGGTCACAGGCATTACTAACCAATCAGAAC
8857709 ATTTAATTTCA
66 ATTTAATTTCA
8857720 TCGCAAGCGA
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
83 69 1.00
ACGTcount: A:0.33, C:0.28, G:0.11, T:0.28
Consensus pattern (83 bp):
TGTAACACCCCTAACCCCTCTCCATCATCAGATTAAGGTCACAGGCATTACTAACCAATCAGAAC
ATTTAATTTCAAACTAAA
Found at i:8858375 original size:21 final size:20
Alignment explanation
Indices: 8858336--8858375 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
8858326 TCAATTACCA
* *
8858336 ACATTTAACCTATTTAAAAC
1 ACATTTAACATACTTAAAAC
8858356 ACATTTAAACATACTTAAAA
1 ACATTT-AACATACTTAAAA
8858376 GATGCCAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (20 bp):
ACATTTAACATACTTAAAAC
Found at i:8862177 original size:37 final size:37
Alignment explanation
Indices: 8862127--8862205 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
8862117 TTATTACGAA
* * *
8862127 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
8862164 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
8862201 GTCTT
1 GTCTT
8862206 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:8862402 original size:47 final size:47
Alignment explanation
Indices: 8862324--8862752 Score: 682
Period size: 47 Copynumber: 9.1 Consensus size: 47
8862314 CCCTTTGGGA
* * * * * *
8862324 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
8862371 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8862418 CTTATCTCATATATACACTTTCACATTCATCACATC-G-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8862463 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8862512 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8862561 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8862608 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8862655 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8862702 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8862749 CTTA
1 CTTA
8862753 CTATCATTTC
Statistics
Matches: 361, Mismatches: 17, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
45 14 0.04
46 1 0.00
47 282 0.78
48 1 0.00
49 63 0.17
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:8862669 original size:190 final size:188
Alignment explanation
Indices: 8862324--8862752 Score: 702
Period size: 190 Copynumber: 2.3 Consensus size: 188
8862314 CCCTTTGGGA
* * * * * * *
8862324 CTTATCACATT-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACA
1 CTTATCACATTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
8862388 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTTCACATTCATCACAT
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTTCACATTCATCACAT
8862453 CGCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 CGCATTAGGCCCTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8862512 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATAC
1 CTTATCACAT-TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
8862577 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTTCACATTCATCACA
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTTCACATTCATCACA
* *
8862642 TCGGCCATTAGGCCTTATCTC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
130 TC-G-CATTAGGCCCTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8862702 CTTATCAC-GTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 CTTATCACATTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
8862753 CTATCATTTC
Statistics
Matches: 226, Mismatches: 11, Indels: 8
0.92 0.04 0.03
Matches are distributed among these distances:
188 52 0.23
189 1 0.00
190 158 0.70
191 1 0.00
192 14 0.06
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (188 bp):
CTTATCACATTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTTCACATTCATCACAT
CGCATTAGGCCCTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:8865919 original size:24 final size:24
Alignment explanation
Indices: 8865892--8865938 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
8865882 AGCAAGTATT
8865892 AGTTTAACTATACATGCCATTATG
1 AGTTTAACTATACATGCCATTATG
8865916 AGTTTAACTATACATGCCATTAT
1 AGTTTAACTATACATGCCATTAT
8865939 ATAATTTGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (24 bp):
AGTTTAACTATACATGCCATTATG
Done.