Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 28 of 235
Found at i:8874262 original size:21 final size:22
Alignment explanation
Indices: 8874221--8874272 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 22
8874211 CATACATTTT
* *
8874221 ATAC-TATTTATTAATTATAAC
1 ATACATATATATTAAGTATAAC
8874242 ATACATATATATTAAGT-TAAC
1 ATACATATATATTAAGTATAAC
*
8874263 ATATATATAT
1 ATACATATAT
8874273 GACATATATC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 17 0.63
22 10 0.37
ACGTcount: A:0.46, C:0.08, G:0.02, T:0.44
Consensus pattern (22 bp):
ATACATATATATTAAGTATAAC
Found at i:8874947 original size:36 final size:36
Alignment explanation
Indices: 8874893--8874977 Score: 109
Period size: 36 Copynumber: 2.3 Consensus size: 36
8874883 TTTTAAACTG
* *
8874893 TTATGTATATTATGTATGTTATGTACTATTATGTATA
1 TTATGTAT-GTATGTATGTTATGTAATATTATGTATA
*
8874930 TT-TGTATGTATGTTATGTTATGTAATGTTATGTATA
1 TTATGTATGTATG-TATGTTATGTAATATTATGTATA
*
8874966 TTATGTGTGTAT
1 TTATGTATGTAT
8874978 TTTTGTATGT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
35 4 0.10
36 28 0.67
37 10 0.24
ACGTcount: A:0.26, C:0.01, G:0.18, T:0.55
Consensus pattern (36 bp):
TTATGTATGTATGTATGTTATGTAATATTATGTATA
Found at i:8874957 original size:10 final size:9
Alignment explanation
Indices: 8874891--8874971 Score: 85
Period size: 9 Copynumber: 8.9 Consensus size: 9
8874881 GTTTTTAAAC
8874891 TGTTATGTA
1 TGTTATGTA
*
8874900 TATTATGTA
1 TGTTATGTA
8874909 TGTTATGTA
1 TGTTATGTA
*
8874918 CTATTATGTA
1 -TGTTATGTA
*
8874928 TATT-TGTA
1 TGTTATGTA
8874936 TG-TATGTTA
1 TGTTATG-TA
8874945 TGTTATGTAA
1 TGTTATGT-A
8874955 TGTTATGTA
1 TGTTATGTA
*
8874964 TATTATGT
1 TGTTATGT
8874972 GTGTATTTTT
Statistics
Matches: 62, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
7 1 0.02
8 7 0.11
9 33 0.53
10 21 0.34
ACGTcount: A:0.26, C:0.01, G:0.17, T:0.56
Consensus pattern (9 bp):
TGTTATGTA
Found at i:8874959 original size:15 final size:14
Alignment explanation
Indices: 8874891--8875079 Score: 71
Period size: 13 Copynumber: 13.6 Consensus size: 14
8874881 GTTTTTAAAC
8874891 TGTTATGTATAT-TA
1 TGTTATGT-TATGTA
8874905 TG-TATGTTATGTA
1 TGTTATGTTATGTA
*
8874918 CTATTATGTATATTTGTA
1 -TGTTATGT-TA--TGTA
8874936 TG-TATGTTATGTTA
1 TGTTATGTTATG-TA
*
8874950 TGTAATGTTATGTA
1 TGTTATGTTATGTA
* *
8874964 TATTATG-TGTGTA
1 TGTTATGTTATGTA
* *
8874977 T-TTTTG-TATGTT
1 TGTTATGTTATGTA
* *
8874989 TTTTATG-TGT-TA
1 TGTTATGTTATGTA
*
8875001 TATTACTGTTATGGT-
1 TGTTA-TGTTAT-GTA
*
8875016 TG-TATATTATGTA
1 TGTTATGTTATGTA
*
8875029 TGTCATAT-TTAATGTG
1 TGT--TATGTT-ATGTA
* *
8875045 TG-TATATTGTGTA
1 TGTTATGTTATGTA
8875058 TGTTATG-TATGTA
1 TGTTATGTTATGTA
8875071 TGTTATGTT
1 TGTTATGTT
8875080 TAGCACTGTT
Statistics
Matches: 133, Mismatches: 21, Indels: 42
0.68 0.11 0.21
Matches are distributed among these distances:
12 19 0.14
13 50 0.38
14 24 0.18
15 18 0.14
16 17 0.13
17 1 0.01
18 4 0.03
ACGTcount: A:0.23, C:0.02, G:0.19, T:0.57
Consensus pattern (14 bp):
TGTTATGTTATGTA
Found at i:8878505 original size:27 final size:27
Alignment explanation
Indices: 8878444--8878787 Score: 230
Period size: 27 Copynumber: 12.8 Consensus size: 27
8878434 AAGACCCCGG
* *
8878444 TTGTAAAATTA-CTGAAATTCCC-CAGT
1 TTGTAAAATTATC-GAAATACCCTTAGT
8878470 TTGTAAAATTATCGAAATACCCTTAGT
1 TTGTAAAATTATCGAAATACCCTTAGT
* * *
8878497 TTGTAAAATTATCGACATA-CCTCCAAT
1 TTGTAAAATTATCGAAATACCCT-TAGT
* * * * *
8878524 TTGTAAAATTACCAAAATATCCTCAAT
1 TTGTAAAATTATCGAAATACCCTTAGT
* * *
8878551 TTGTAAAATTA-CTGAAATACCCCTGGC
1 TTGTAAAATTATC-GAAATACCCTTAGT
**
8878578 TTGTAAAATTATCGAAATACCCCCAGT
1 TTGTAAAATTATCGAAATACCCTTAGT
* * *
8878605 TTGTAAAATTACCAAAATA-CTTTCAGT
1 TTGTAAAATTATCGAAATACCCTT-AGT
**
8878632 TTGTAAAATTATCGAAATACCACCGA-T
1 TTGTAAAATTATCGAAATACC-CTTAGT
* *
8878659 TTATAAAATTA-CTGAAATA-CCTTCGGT
1 TTGTAAAATTATC-GAAATACCCTT-AGT
8878686 TTGTAAAATTATCGAAATACCCCTTAG-
1 TTGTAAAATTATCGAAATA-CCCTTAGT
* * *
8878713 -TGTAAAATTA-CTAAAATA-CATTCGAT
1 TTGTAAAATTATC-GAAATACCCTTAG-T
*
8878739 TTGTAAAATTATTGAAATACCCCTGTAG-
1 TTGTAAAATTATCGAAATA-CCCT-TAGT
* *
8878767 -TGTAAAATTACCAAAATACCC
1 TTGTAAAATTATCGAAATACCC
8878788 CTGTAGGACA
Statistics
Matches: 251, Mismatches: 44, Indels: 46
0.74 0.13 0.13
Matches are distributed among these distances:
24 4 0.02
25 2 0.01
26 44 0.18
27 185 0.74
28 8 0.03
29 6 0.02
30 2 0.01
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (27 bp):
TTGTAAAATTATCGAAATACCCTTAGT
Found at i:8878533 original size:54 final size:54
Alignment explanation
Indices: 8878444--8878786 Score: 317
Period size: 54 Copynumber: 6.4 Consensus size: 54
8878434 AAGACCCCGG
*
8878444 TTGTAAAATTACTGAAATTCC-CCAGTTTGTAAAATTATCGAAATACCCTTAGT
1 TTGTAAAATTACTGAAATACCTCCAGTTTGTAAAATTATCGAAATACCCTTAGT
* * * * * * *
8878497 TTGTAAAATTA-TCGACATACCTCCAATTTGTAAAATTACCAAAATATCCTCAAT
1 TTGTAAAATTACT-GAAATACCTCCAGTTTGTAAAATTATCGAAATACCCTTAGT
* * **
8878551 TTGTAAAATTACTGAAATACC-CCTGGCTTGTAAAATTATCGAAATACCCCCAGT
1 TTGTAAAATTACTGAAATACCTCC-AGTTTGTAAAATTATCGAAATACCCTTAGT
** * * **
8878605 TTGTAAAATTACCAAAATACTTTCAGTTTGTAAAATTATCGAAATACCACCGA-T
1 TTGTAAAATTACTGAAATACCTCCAGTTTGTAAAATTATCGAAATACC-CTTAGT
* * *
8878659 TTATAAAATTACTGAAATACCTTCGGTTTGTAAAATTATCGAAATACCCCTTAG-
1 TTGTAAAATTACTGAAATACCTCCAGTTTGTAAAATTATCGAAATA-CCCTTAGT
* * * *
8878713 -TGTAAAATTACTAAAATACATTC-GATTTGTAAAATTATTGAAATACCCCTGTAG-
1 TTGTAAAATTACTGAAATACCTCCAG-TTTGTAAAATTATCGAAATA-CCCT-TAGT
**
8878767 -TGTAAAATTACCAAAATACC
1 TTGTAAAATTACTGAAATACC
8878787 CCTGTAGGAC
Statistics
Matches: 243, Mismatches: 37, Indels: 19
0.81 0.12 0.06
Matches are distributed among these distances:
52 2 0.01
53 63 0.26
54 171 0.70
55 7 0.03
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (54 bp):
TTGTAAAATTACTGAAATACCTCCAGTTTGTAAAATTATCGAAATACCCTTAGT
Found at i:8878582 original size:81 final size:81
Alignment explanation
Indices: 8878444--8878652 Score: 280
Period size: 81 Copynumber: 2.6 Consensus size: 81
8878434 AAGACCCCGG
** * * *
8878444 TTGTAAAATTACTGAAAT-TCCCCAGTTTGTAAAATTATCGAAATACCCTTAGTTTGTAAAATTA
1 TTGTAAAATTACCAAAATATCCTCAGTTTGTAAAATTATCGAAATACCCCTAGCTTGTAAAATTA
* *
8878508 TCGACATACCTCCAAT
66 TCGAAATACCCCCAAT
* *
8878524 TTGTAAAATTACCAAAATATCCTCAATTTGTAAAATTA-CTGAAATACCCCTGGCTTGTAAAATT
1 TTGTAAAATTACCAAAATATCCTCAGTTTGTAAAATTATC-GAAATACCCCTAGCTTGTAAAATT
*
8878588 ATCGAAATACCCCCAGT
65 ATCGAAATACCCCCAAT
*
8878605 TTGTAAAATTACCAAAATA-CTTTCAGTTTGTAAAATTATCGAAATACC
1 TTGTAAAATTACCAAAATATC-CTCAGTTTGTAAAATTATCGAAATACC
8878653 ACCGATTTAT
Statistics
Matches: 113, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
80 18 0.16
81 94 0.83
82 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (81 bp):
TTGTAAAATTACCAAAATATCCTCAGTTTGTAAAATTATCGAAATACCCCTAGCTTGTAAAATTA
TCGAAATACCCCCAAT
Found at i:8878666 original size:81 final size:80
Alignment explanation
Indices: 8878466--8878785 Score: 287
Period size: 81 Copynumber: 4.0 Consensus size: 80
8878456 TGAAATTCCC
** * * *
8878466 CAGTTTGTAAAATTA-TCGAAATACCCTTAGTTTGTAAAATTATCGACATACCTCCAATTTGTAA
1 CAGTTTGTAAAATTACT-GAAATACCCCGA-TTTGTAAAATTATCGAAATACCCCCAGTTTGTAA
*
8878530 AATTACCAAAATA-TCCT
64 AATTACCAAAATACT-TT
* **
8878547 CAATTTGTAAAATTACTGAAATACCCCTGGCTTGTAAAATTATCGAAATACCCCCAGTTTGTAAA
1 CAGTTTGTAAAATTACTGAAATACCCC-GATTTGTAAAATTATCGAAATACCCCCAGTTTGTAAA
8878612 ATTACCAAAATACTTT
65 ATTACCAAAATACTTT
* ** *
8878628 CAGTTTGTAAAATTA-TCGAAATACCACCGATTTATAAAATTA-CTGAAATACCTTCGGTTTGTA
1 CAGTTTGTAAAATTACT-GAAATACC-CCGATTTGTAAAATTATC-GAAATACCCCCAGTTTGTA
* * *
8878691 AAATTATCGAAATACCCCTT
63 AAATTACCAAAATA--CTTT
* ** * * *
8878711 -AG--TGTAAAATTACTAAAATACATTCGATTTGTAAAATTATTGAAATA-CCCCTGTAGTGTAA
1 CAGTTTGTAAAATTACTGAAATAC-CCCGATTTGTAAAATTATCGAAATACCCCCAGT-TTGTAA
8878772 AATTACCAAAATAC
64 AATTACCAAAATAC
8878786 CCCTGTAGGA
Statistics
Matches: 197, Mismatches: 30, Indels: 27
0.78 0.12 0.11
Matches are distributed among these distances:
78 1 0.01
79 4 0.02
80 54 0.27
81 129 0.65
82 6 0.03
83 3 0.02
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.33
Consensus pattern (80 bp):
CAGTTTGTAAAATTACTGAAATACCCCGATTTGTAAAATTATCGAAATACCCCCAGTTTGTAAAA
TTACCAAAATACTTT
Found at i:8878801 original size:107 final size:107
Alignment explanation
Indices: 8878582--8878801 Score: 234
Period size: 107 Copynumber: 2.0 Consensus size: 107
8878572 CCTGGCTTGT
*
8878582 AAAATTATCGAAATACCCCCAGTTTGTAAAATTACCAAAATACTTTCAGTTTGTAAAATTATCGA
1 AAAATTATCGAAATACCCCCAG-TTGTAAAATTACCAAAATACATTCAGTTTGTAAAATTATCGA
* ** * ** *
8878647 AATACCACCGATTTATAAAATTACTGAAATACCTTCGGTTTGT
65 AATACCACCGATGTATAAAATTACCAAAATACCTCCGGTAGGC
* * *
8878690 AAAATTATCGAAATACCCCTTAG-TGTAAAATTACTAAAATACATTC-GATTTGTAAAATTATTG
1 AAAATTATCGAAATACCCC-CAGTTGTAAAATTACCAAAATACATTCAG-TTTGTAAAATTATCG
* *
8878753 AAATACC-CCTG-TAGTGTAAAATTACCAAAATACC-CCTGTAGGAC
64 AAATACCACC-GAT-GTATAAAATTACCAAAATACCTCCGGTAGG-C
8878797 AAAAT
1 AAAAT
8878802 GACTGTTTTG
Statistics
Matches: 94, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
106 8 0.09
107 65 0.69
108 19 0.20
109 2 0.02
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.31
Consensus pattern (107 bp):
AAAATTATCGAAATACCCCCAGTTGTAAAATTACCAAAATACATTCAGTTTGTAAAATTATCGAA
ATACCACCGATGTATAAAATTACCAAAATACCTCCGGTAGGC
Found at i:8879252 original size:27 final size:28
Alignment explanation
Indices: 8879192--8879258 Score: 68
Period size: 27 Copynumber: 2.5 Consensus size: 28
8879182 AGTGGCTATG
* * *
8879192 TGCCTATCATATTTATTCATGACTCTGTA
1 TGCCGATCATATTTACTCATGA-GCTGTA
8879221 T--CGATCATATTTACTCATG-GCTGTA
1 TGCCGATCATATTTACTCATGAGCTGTA
*
8879246 TGCCGATTATATT
1 TGCCGATCATATT
8879259 AACGTCGCTG
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
25 6 0.19
27 25 0.78
29 1 0.03
ACGTcount: A:0.24, C:0.19, G:0.13, T:0.43
Consensus pattern (28 bp):
TGCCGATCATATTTACTCATGAGCTGTA
Found at i:8879574 original size:27 final size:27
Alignment explanation
Indices: 8879507--8879574 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 27
8879497 TATTACTAAG
* * *
8879507 ATGGGC-TAGGCCCAATTGATTCTGTT
1 ATGGGCTTTGGCCCAAATGATTCTGTA
* *
8879533 ATGGGCTGTGACCCAAATGATAT-TGTA
1 ATGGGCTTTGGCCCAAATGAT-TCTGTA
8879560 ATGGGCTTTGGCCCA
1 ATGGGCTTTGGCCCA
8879575 TTTATGCTCT
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
26 6 0.18
27 26 0.79
28 1 0.03
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (27 bp):
ATGGGCTTTGGCCCAAATGATTCTGTA
Found at i:8882754 original size:54 final size:54
Alignment explanation
Indices: 8882646--8882937 Score: 311
Period size: 54 Copynumber: 5.4 Consensus size: 54
8882636 AAGACCCCGG
* ** *
8882646 TTGTAAAATTACTGAAATA-CCCTGATTTGTAAAATTATCAAAATACCTCCAAT
1 TTGTAAAATTATTGAAATACCCCCAATTTGTAAAATTACCAAAATACCTCCAAT
* *
8882699 TTGTAAAATTATTTAAATACCCCCAATTTTTAAAATTACCAAAATACC-CCAAAT
1 TTGTAAAATTATTGAAATACCCCCAATTTGTAAAATTACCAAAATACCTCC-AAT
* * * * * *
8882753 TTATAAAATTACTGAAATACCCCTAGTTTGTAAAATTACTAAAATACC-CCTAGT
1 TTGTAAAATTATTGAAATACCCCCAATTTGTAAAATTACCAAAATACCTCC-AAT
* * * * * *
8882807 TTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACCTAAATACCTTCAGT
1 TTGTAAAATTATTGAAATACCCCCAATTTGTAAAATTACCAAAATACCTCCAAT
* * * * *
8882861 TGGTAAAATTATCGAAATACCCCCAGTTTGTAAAATTACCAAAATACCACCTAT
1 TTGTAAAATTATTGAAATACCCCCAATTTGTAAAATTACCAAAATACCTCCAAT
* **
8882915 TTATAAAATTACCGAAATACCCC
1 TTGTAAAATTATTGAAATACCCC
8882938 TATAGGGTAA
Statistics
Matches: 199, Mismatches: 37, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
53 19 0.10
54 179 0.90
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (54 bp):
TTGTAAAATTATTGAAATACCCCCAATTTGTAAAATTACCAAAATACCTCCAAT
Found at i:8882783 original size:81 final size:80
Alignment explanation
Indices: 8882646--8882939 Score: 299
Period size: 81 Copynumber: 3.6 Consensus size: 80
8882636 AAGACCCCGG
** ** * * *
8882646 TTGTAAAATTACTGAAATACCCTGATTTGTAAAATTA-TCAAAATACCTCC-AATTTGTAAAATT
1 TTGTAAAATTACCAAAATACCCCAATTTATAAAATTACT-GAAATACC-CCTAGTTTGTAAAATT
* *
8882709 ATTTAAATACCCCCAAT
64 ATTAAAATACCCCCAGT
*
8882726 TTTTAAAATTACCAAAATACCCCAAATTTATAAAATTACTGAAATACCCCTAGTTTGTAAAATTA
1 TTGTAAAATTACCAAAATACCCC-AATTTATAAAATTACTGAAATACCCCTAGTTTGTAAAATTA
* *
8882791 CTAAAATACCCCTAGT
65 TTAAAATACCCCCAGT
* * * * * *
8882807 TTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACCT-AAATA-CCTTCAGTTGGTAAAAT
1 TTGTAAAATTACCAAAATACCC-CAATTTATAAAATTA-CTGAAATACCCCT-AGTTTGTAAAAT
**
8882870 TATCGAAATACCCCCAGT
63 TATTAAAATACCCCCAGT
* *
8882888 TTGTAAAATTACCAAAATACCACCTATTTATAAAATTACCGAAATACCCCTA
1 TTGTAAAATTACCAAAATACC-CCAATTTATAAAATTACTGAAATACCCCTA
8882940 TAGGGTAAAA
Statistics
Matches: 176, Mismatches: 29, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
80 25 0.14
81 143 0.81
82 8 0.05
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (80 bp):
TTGTAAAATTACCAAAATACCCCAATTTATAAAATTACTGAAATACCCCTAGTTTGTAAAATTAT
TAAAATACCCCCAGT
Found at i:8882953 original size:27 final size:26
Alignment explanation
Indices: 8882646--8882940 Score: 261
Period size: 27 Copynumber: 11.0 Consensus size: 26
8882636 AAGACCCCGG
*
8882646 TTGTAAAATTACTGAAATA-CCCTGAT
1 TTGTAAAATTACCGAAATACCCCT-AT
* * *
8882672 TTGTAAAATTATCAAAATACCTCCAAT
1 TTGTAAAATTACCGAAATACC-CCTAT
*** *
8882699 TTGTAAAATTATTTAAATACCCCCAAT
1 TTGTAAAATTACCGAAATA-CCCCTAT
* * *
8882726 TTTTAAAATTACCAAAATACCCCAAAT
1 TTGTAAAATTACCGAAATACCCC-TAT
* *
8882753 TTATAAAATTACTGAAATACCCCTAGT
1 TTGTAAAATTACCGAAATACCCCTA-T
**
8882780 TTGTAAAATTACTAAAATACCCCTAGT
1 TTGTAAAATTACCGAAATACCCCTA-T
* *
8882807 TTGTAAAATTATCGAAATACCCTCGAT
1 TTGTAAAATTACCGAAATACCC-CTAT
* *
8882834 TTGTAAAATTACCTAAATA-CCTTCAGT
1 TTGTAAAATTACCGAAATACCCCT-A-T
* * *
8882861 TGGTAAAATTATCGAAATACCCCCAGT
1 TTGTAAAATTACCGAAATACCCCTA-T
*
8882888 TTGTAAAATTACCAAAATACCACCTAT
1 TTGTAAAATTACCGAAATACC-CCTAT
*
8882915 TTATAAAATTACCGAAATACCCCTAT
1 TTGTAAAATTACCGAAATACCCCTAT
8882941 AGGGTAAAAT
Statistics
Matches: 224, Mismatches: 35, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
26 29 0.13
27 184 0.82
28 11 0.05
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.33
Consensus pattern (26 bp):
TTGTAAAATTACCGAAATACCCCTAT
Found at i:8883287 original size:18 final size:19
Alignment explanation
Indices: 8883264--8883334 Score: 81
Period size: 22 Copynumber: 3.5 Consensus size: 19
8883254 TCTGATTATG
8883264 GCTCTGTGCCAAC-ATATA
1 GCTCTGTGCCAACAATATA
8883282 GCTCTGTGCCAACCTAAATATA
1 GCTCTGTGCCAA-C--AATATA
8883304 GCTCTGTGCCAACCTAAATATA
1 GCTCTGTGCCAA-C--AATATA
8883326 GCTCTGTGC
1 GCTCTGTGC
8883335 TATGTTGAAT
Statistics
Matches: 49, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
18 12 0.24
19 1 0.02
22 36 0.73
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (19 bp):
GCTCTGTGCCAACAATATA
Found at i:8883305 original size:22 final size:22
Alignment explanation
Indices: 8883277--8883334 Score: 116
Period size: 22 Copynumber: 2.6 Consensus size: 22
8883267 CTGTGCCAAC
8883277 ATATAGCTCTGTGCCAACCTAA
1 ATATAGCTCTGTGCCAACCTAA
8883299 ATATAGCTCTGTGCCAACCTAA
1 ATATAGCTCTGTGCCAACCTAA
8883321 ATATAGCTCTGTGC
1 ATATAGCTCTGTGC
8883335 TATGTTGAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (22 bp):
ATATAGCTCTGTGCCAACCTAA
Found at i:8883436 original size:27 final size:27
Alignment explanation
Indices: 8883372--8883447 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
8883362 GTATCTACCA
* * * *
8883372 ATGGCTATGTGCCTATCATATTTATTG
1 ATGGCTATGTGTCGATCATATTTACTC
* *
8883399 ATGACTCTGTGTCGATCATATTTACTC
1 ATGGCTATGTGTCGATCATATTTACTC
* *
8883426 ATGGCTGTGTGTCGATTATATT
1 ATGGCTATGTGTCGATCATATT
8883448 ACCCTCGTCG
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.21, C:0.16, G:0.20, T:0.43
Consensus pattern (27 bp):
ATGGCTATGTGTCGATCATATTTACTC
Found at i:8892267 original size:15 final size:15
Alignment explanation
Indices: 8892247--8892276 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8892237 AAATATAACT
8892247 TTAAAAGAAAAAAAA
1 TTAAAAGAAAAAAAA
*
8892262 TTAAAATAAAAAAAA
1 TTAAAAGAAAAAAAA
8892277 AAGCGAGTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (15 bp):
TTAAAAGAAAAAAAA
Found at i:8897903 original size:30 final size:30
Alignment explanation
Indices: 8897869--8897930 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
8897859 CTATACATAC
8897869 TAGAATTTGGCTCAAAATGCTTAGAGTTTT
1 TAGAATTTGGCTCAAAATGCTTAGAGTTTT
*
8897899 TAGAATTTGGCTCAAAATGCTTAGGGTTTT
1 TAGAATTTGGCTCAAAATGCTTAGAGTTTT
8897929 TA
1 TA
8897931 ATGTGATATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (30 bp):
TAGAATTTGGCTCAAAATGCTTAGAGTTTT
Found at i:8899720 original size:27 final size:27
Alignment explanation
Indices: 8899690--8899742 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
8899680 AGGCTTGGTG
8899690 AAGTAAGGATCGCCAATAGGCCTGGCA
1 AAGTAAGGATCGCCAATAGGCCTGGCA
*
8899717 AAGTAAGGATCGCCAGTAGGCCTGGC
1 AAGTAAGGATCGCCAATAGGCCTGGC
8899743 GAACTGGGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.32, T:0.15
Consensus pattern (27 bp):
AAGTAAGGATCGCCAATAGGCCTGGCA
Found at i:8903434 original size:40 final size:40
Alignment explanation
Indices: 8903379--8903459 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
8903369 TAGTAGCTAA
8903379 ACCCCTACTCTAAATTCCAACTGTAAGCTTCCTCATACCT
1 ACCCCTACTCTAAATTCCAACTGTAAGCTTCCTCATACCT
* *
8903419 ACCCCTACTCTAAATTCCAAGTGTGAGCTTCCTCATACCT
1 ACCCCTACTCTAAATTCCAACTGTAAGCTTCCTCATACCT
8903459 A
1 A
8903460 TGTTATCTTG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.27, C:0.36, G:0.07, T:0.30
Consensus pattern (40 bp):
ACCCCTACTCTAAATTCCAACTGTAAGCTTCCTCATACCT
Found at i:8908946 original size:8 final size:8
Alignment explanation
Indices: 8908912--8908982 Score: 92
Period size: 8 Copynumber: 9.1 Consensus size: 8
8908902 AATTTGTAGT
8908912 AATTTTTA
1 AATTTTTA
*
8908920 AA--TATA
1 AATTTTTA
*
8908926 AAATTTTA
1 AATTTTTA
*
8908934 TATTTTTA
1 AATTTTTA
8908942 AATTTTTA
1 AATTTTTA
*
8908950 AAATTTTA
1 AATTTTTA
8908958 AATTTTTA
1 AATTTTTA
8908966 AATTTTTA
1 AATTTTTA
8908974 AATTTTTA
1 AATTTTTA
8908982 A
1 A
8908983 TTAATTGATA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
6 5 0.09
8 49 0.91
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (8 bp):
AATTTTTA
Found at i:8909310 original size:21 final size:20
Alignment explanation
Indices: 8909282--8909320 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
8909272 AAATTTATAC
8909282 ATTTTTTCAAAATATTTTCA
1 ATTTTTTCAAAATATTTTCA
* *
8909302 ATTTATTTCCACATATTTT
1 ATTT-TTTCAAAATATTTT
8909321 TTATTATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.31, C:0.13, G:0.00, T:0.56
Consensus pattern (20 bp):
ATTTTTTCAAAATATTTTCA
Found at i:8913120 original size:21 final size:21
Alignment explanation
Indices: 8913081--8913122 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
8913071 TTTGCCTAAG
*
8913081 ATATGAATTGGTTTGAATTGA
1 ATATGAATTGGTTTAAATTGA
8913102 ATATGAATT-GTATTAAATTGA
1 ATATGAATTGGT-TTAAATTGA
8913123 GCTAAATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.43
Consensus pattern (21 bp):
ATATGAATTGGTTTAAATTGA
Found at i:8913628 original size:26 final size:26
Alignment explanation
Indices: 8913579--8913646 Score: 70
Period size: 26 Copynumber: 2.7 Consensus size: 26
8913569 CCTGATATAT
*
8913579 GGCTCTTCGTGAGCTTCACGATTAAA
1 GGCTCTTCGTGAGCTTCACAATTAAA
* *
8913605 GGCTCTTTGTGAGCTTC-CTAATTAAT
1 GGCTCTTCGTGAGCTTCAC-AATTAAA
8913631 GGCT-TTC-TGAAGCTTC
1 GGCTCTTCGTG-AGCTTC
8913647 TCGATATTGG
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
24 2 0.06
25 9 0.25
26 25 0.69
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GGCTCTTCGTGAGCTTCACAATTAAA
Found at i:8913670 original size:24 final size:25
Alignment explanation
Indices: 8913629--8913683 Score: 62
Period size: 24 Copynumber: 2.2 Consensus size: 25
8913619 TTCCTAATTA
*
8913629 ATGGCTTTCTGAAGCTTCTC-GATAT
1 ATGGCTTGCTGAAGCTTC-CAGATAT
8913654 -TGGCTTGCTTGAA-CTTCCAGATAT
1 ATGGCTTGC-TGAAGCTTCCAGATAT
8913678 ATGGCT
1 ATGGCT
8913684 ATCTAGAGCT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
23 1 0.04
24 16 0.62
25 9 0.35
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (25 bp):
ATGGCTTGCTGAAGCTTCCAGATAT
Found at i:8913705 original size:74 final size:73
Alignment explanation
Indices: 8913614--8913769 Score: 181
Period size: 74 Copynumber: 2.1 Consensus size: 73
8913604 AGGCTCTTTG
* * * *
8913614 TGAGCTTCCTAATTAATGGCT-TTCTGAAGCTTCTCGATATTGGCTTGCTTGAACTTCCAGATAT
1 TGAGCTTCCTAATTAATGGCTCTTC-GAAGCTACCCGATATTGGCTCGCATGAACTTCCAGAT-T
8913678 ATGGCTATCTA
64 ATGGCTAT-TA
* * * * *
8913689 -GAGCTTCCTGATTAATGGCTCTTCGGAGCTACCCGTTATTGGCTCGCATGAGCTTCCTGATTAT
1 TGAGCTTCCTAATTAATGGCTCTTCGAAGCTACCCGATATTGGCTCGCATGAACTTCCAGATTAT
*
8913753 GGCTCTTA
66 GGCTATTA
8913761 TGAGCTTCC
1 TGAGCTTCC
8913770 CATTTATGTG
Statistics
Matches: 69, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
72 2 0.03
73 16 0.23
74 48 0.70
75 3 0.04
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (73 bp):
TGAGCTTCCTAATTAATGGCTCTTCGAAGCTACCCGATATTGGCTCGCATGAACTTCCAGATTAT
GGCTATTA
Found at i:8913706 original size:25 final size:22
Alignment explanation
Indices: 8913614--8913708 Score: 57
Period size: 25 Copynumber: 3.9 Consensus size: 22
8913604 AGGCTCTTTG
*
8913614 TGAGCTTCCTAATTAATGGCTTTC
1 TGAGCTTCCTGA-TAATGGC-TTC
*
8913638 TGAAGCTT-CTCGATATTGGCTTGC
1 TG-AGCTTCCT-GATAATGGCTT-C
* *
8913662 TTGAACTTCCAGATATATGGCTATC
1 -TGAGCTTCCTGATA-ATGGCT-TC
8913687 TAGAGCTTCCTGATTAATGGCT
1 T-GAGCTTCCTGA-TAATGGCT
8913709 CTTCGGAGCT
Statistics
Matches: 55, Mismatches: 7, Indels: 17
0.70 0.09 0.22
Matches are distributed among these distances:
23 2 0.04
24 20 0.36
25 30 0.55
26 3 0.05
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (22 bp):
TGAGCTTCCTGATAATGGCTTC
Found at i:8913755 original size:24 final size:24
Alignment explanation
Indices: 8913689--8913795 Score: 67
Period size: 24 Copynumber: 4.3 Consensus size: 24
8913679 TGGCTATCTA
* *
8913689 GAGCTTCCTGATTAATGGCTCTTC-G
1 GAGCTTCCTGATT-ATGGCTC-GCAT
* *
8913714 GAGCTACCCG-TTATTGGCTCGCAT
1 GAGCTTCCTGATTA-TGGCTCGCAT
**
8913738 GAGCTTCCTGATTATGGCTCTTAT
1 GAGCTTCCTGATTATGGCTCGCAT
* *
8913762 GAGCTTCC-CATTTATGTGCTCGTAT
1 GAGCTTCCTGA-TTATG-GCTCGCAT
8913787 GAGCATTCC
1 GAGC-TTCC
8913796 CAAATATGAA
Statistics
Matches: 66, Mismatches: 10, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
23 3 0.05
24 37 0.56
25 22 0.33
26 4 0.06
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (24 bp):
GAGCTTCCTGATTATGGCTCGCAT
Found at i:8913788 original size:25 final size:23
Alignment explanation
Indices: 8913714--8913797 Score: 78
Period size: 24 Copynumber: 3.4 Consensus size: 23
8913704 TGGCTCTTCG
* * *
8913714 GAGCTACCCGTTATTGGCTCGCAT
1 GAGCTTCCCATTA-TGGCTCGTAT
* *
8913738 GAGCTTCCTGATTATGGCTCTTAT
1 GAGCTTCC-CATTATGGCTCGTAT
8913762 GAGCTTCCCATTTATGTGCTCGTAT
1 GAGCTTCCCA-TTATG-GCTCGTAT
8913787 GAGCATTCCCA
1 GAGC-TTCCCA
8913798 AATATGAATT
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
23 1 0.02
24 28 0.57
25 14 0.29
26 6 0.12
ACGTcount: A:0.18, C:0.26, G:0.21, T:0.35
Consensus pattern (23 bp):
GAGCTTCCCATTATGGCTCGTAT
Found at i:8915828 original size:29 final size:29
Alignment explanation
Indices: 8915796--8915853 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
8915786 ATTCCAATGG
*
8915796 TTCCA-ACCAAAATCTCACTTATCCAAATA
1 TTCCATACCAAAATCTAACTTA-CCAAATA
* *
8915825 TTCCATATCATAATCTAACTTACCAAATA
1 TTCCATACCAAAATCTAACTTACCAAATA
8915854 CTATCTCATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 12 0.48
30 13 0.52
ACGTcount: A:0.41, C:0.28, G:0.00, T:0.31
Consensus pattern (29 bp):
TTCCATACCAAAATCTAACTTACCAAATA
Found at i:8916655 original size:23 final size:24
Alignment explanation
Indices: 8916603--8916656 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 24
8916593 TTGGTTAGAT
8916603 AATAAAATAATTAAGAATTAATTA
1 AATAAAATAATTAAGAATTAATTA
8916627 AATAAAAT-ATTAA-AA-TAATTA
1 AATAAAATAATTAAGAATTAATTA
8916648 GAATTAAAA
1 -AA-TAAAA
8916657 ATTCTAGGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
21 6 0.21
22 4 0.14
23 10 0.36
24 8 0.29
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (24 bp):
AATAAAATAATTAAGAATTAATTA
Found at i:8918095 original size:15 final size:15
Alignment explanation
Indices: 8918067--8918115 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
8918057 TTTTGTGAGC
*
8918067 TACCCTTATGCGAGA
1 TACCCTTGTGCGAGA
* *
8918082 TACTCTTGTGCGAGC
1 TACCCTTGTGCGAGA
* *
8918097 TACCCTTGAGCGAGC
1 TACCCTTGTGCGAGA
8918112 TACC
1 TACC
8918116 TAAGGGTGCA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.20, C:0.31, G:0.22, T:0.27
Consensus pattern (15 bp):
TACCCTTGTGCGAGA
Found at i:8918269 original size:18 final size:18
Alignment explanation
Indices: 8918246--8918295 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
8918236 CATTCCATTA
8918246 TGTGAATCTATACCTAAG
1 TGTGAATCTATACCTAAG
* *
8918264 TGTGAACCCT-TACC-AGG
1 TGTGAA-TCTATACCTAAG
*
8918281 TGTGAATCTAAACCT
1 TGTGAATCTATACCT
8918296 CATGTATGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 6
0.71 0.11 0.17
Matches are distributed among these distances:
16 2 0.08
17 11 0.44
18 10 0.40
19 2 0.08
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (18 bp):
TGTGAATCTATACCTAAG
Found at i:8918320 original size:36 final size:35
Alignment explanation
Indices: 8918246--8918324 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 35
8918236 CATTCCATTA
* * *
8918246 TGTGAATCTATACCTAAGTGTGAACCCTTACCAGG
1 TGTGAATCTAAACCTAAGTATGAACCCTTACCAAG
*
8918281 TGTGAATCTAAACCTCATGTATGAACCC-TACTCAAG
1 TGTGAATCTAAACCT-AAGTATGAACCCTTAC-CAAG
8918317 TGTGAATC
1 TGTGAATC
8918325 CCTTATTATT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
35 17 0.45
36 21 0.55
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (35 bp):
TGTGAATCTAAACCTAAGTATGAACCCTTACCAAG
Found at i:8918698 original size:31 final size:31
Alignment explanation
Indices: 8918663--8918722 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 31
8918653 ATTATTGCCA
8918663 GGCAA-TTCGAGGTGGTAGGTAATCATTGCAG
1 GGCAACTT-GAGGTGGTAGGTAATCATTGCAG
*
8918694 GGCAACTTGGGGTGGTAGGTAATCATTGC
1 GGCAACTTGAGGTGGTAGGTAATCATTGC
8918723 TGAGCAACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 25 0.93
32 2 0.07
ACGTcount: A:0.23, C:0.13, G:0.37, T:0.27
Consensus pattern (31 bp):
GGCAACTTGAGGTGGTAGGTAATCATTGCAG
Found at i:8926160 original size:18 final size:18
Alignment explanation
Indices: 8926137--8926172 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
8926127 GAAACTCTAT
8926137 ATCCTTCAGGGATTTTAA
1 ATCCTTCAGGGATTTTAA
*
8926155 ATCCTTCTGGGATTTTAA
1 ATCCTTCAGGGATTTTAA
8926173 TATAAATTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.42
Consensus pattern (18 bp):
ATCCTTCAGGGATTTTAA
Found at i:8940442 original size:27 final size:27
Alignment explanation
Indices: 8940412--8940465 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
8940402 AAATGAGGAG
8940412 AAAGTGTTCTGTATGGCAATCATCGCT
1 AAAGTGTTCTGTATGGCAATCATCGCT
*
8940439 AAAGTGTTCTGTATGGCGATCATCGCT
1 AAAGTGTTCTGTATGGCAATCATCGCT
8940466 TATCATCTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (27 bp):
AAAGTGTTCTGTATGGCAATCATCGCT
Found at i:8944262 original size:37 final size:37
Alignment explanation
Indices: 8944212--8944282 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
8944202 CAACGGTGGC
* *
8944212 ATCAATAACAACTCCAGGTAGCTAAGTACTACTTCTA
1 ATCAATAAAAACTCCAGGTAGCTAAGTACCACTTCTA
*
8944249 ATCAATAAAAACTCCAGGTAGCTCAGTACCACTT
1 ATCAATAAAAACTCCAGGTAGCTAAGTACCACTT
8944283 TTGAGTGTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.25
Consensus pattern (37 bp):
ATCAATAAAAACTCCAGGTAGCTAAGTACCACTTCTA
Found at i:8955410 original size:12 final size:13
Alignment explanation
Indices: 8955393--8955425 Score: 59
Period size: 12 Copynumber: 2.6 Consensus size: 13
8955383 ATGCTTTTAG
8955393 TTAGTTTTTG-TT
1 TTAGTTTTTGTTT
8955405 TTAGTTTTTGTTT
1 TTAGTTTTTGTTT
8955418 TTAGTTTT
1 TTAGTTTT
8955426 AATAAATGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 10 0.50
13 10 0.50
ACGTcount: A:0.09, C:0.00, G:0.15, T:0.76
Consensus pattern (13 bp):
TTAGTTTTTGTTT
Found at i:8957107 original size:24 final size:23
Alignment explanation
Indices: 8957051--8957144 Score: 102
Period size: 24 Copynumber: 4.0 Consensus size: 23
8957041 CTGCATCTCC
*
8957051 TATGAGCTTACCGATATATCAGCTCG
1 TATGAGCTTACTG-T-T-TCAGCTCG
* *
8957077 TAAGAGCTTACTGTTCTCAGCTTG
1 TATGAGCTTACTGTT-TCAGCTCG
8957101 TATGAGCTTACTG-TTCAGCTCG
1 TATGAGCTTACTGTTTCAGCTCG
8957123 T-TAGAGCTTACTGTTTCAGCTC
1 TAT-GAGCTTACTGTTTCAGCTC
8957145 AATAGAGTTT
Statistics
Matches: 60, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
21 1 0.02
22 18 0.30
23 9 0.15
24 20 0.33
25 1 0.02
26 11 0.18
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.36
Consensus pattern (23 bp):
TATGAGCTTACTGTTTCAGCTCG
Found at i:8957129 original size:22 final size:23
Alignment explanation
Indices: 8957069--8957159 Score: 105
Period size: 23 Copynumber: 4.0 Consensus size: 23
8957059 TACCGATATA
*
8957069 TCAGCTCGTAAGAGCTTACTGTT
1 TCAGCTCGTTAGAGCTTACTGTT
*
8957092 CTCAGCTTG-TATGAGCTTACTG-T
1 -TCAGCTCGTTA-GAGCTTACTGTT
8957115 TCAGCTCGTTAGAGCTTACTGTT
1 TCAGCTCGTTAGAGCTTACTGTT
** *
8957138 TCAGCTCAATAGAGTTTACTGT
1 TCAGCTCGTTAGAGCTTACTGT
8957160 CCATCAGCTC
Statistics
Matches: 58, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
22 17 0.29
23 24 0.41
24 17 0.29
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (23 bp):
TCAGCTCGTTAGAGCTTACTGTT
Found at i:8960549 original size:29 final size:29
Alignment explanation
Indices: 8960517--8960710 Score: 248
Period size: 29 Copynumber: 6.7 Consensus size: 29
8960507 TGGATAGTTT
*
8960517 CGACTATCAACTATGAAAAGGGATGGTGA
1 CGACCATCAACTATGAAAAGGGATGGTGA
*
8960546 CGACAATCAACTATGAAAAGGGATGGTGA
1 CGACCATCAACTATGAAAAGGGATGGTGA
* *
8960575 CGACCATCAACTATAAAAAAGGATGGTGA
1 CGACCATCAACTATGAAAAGGGATGGTGA
* * *
8960604 TGACCATTAATTGATGAAAAGGGATGGTGA
1 CGACCATCAACT-ATGAAAAGGGATGGTGA
*
8960634 CGACCATCAAATATGAAAAGGGATGGTGA
1 CGACCATCAACTATGAAAAGGGATGGTGA
* *
8960663 CGACCATTGAA-TATGAAAAGGGATAGTGA
1 CGACCA-TCAACTATGAAAAGGGATGGTGA
*
8960692 TGACCATCGAA-TATGAAAA
1 CGACCATC-AACTATGAAAA
8960711 TTTACGACCA
Statistics
Matches: 146, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
28 1 0.01
29 118 0.81
30 27 0.18
ACGTcount: A:0.41, C:0.13, G:0.26, T:0.20
Consensus pattern (29 bp):
CGACCATCAACTATGAAAAGGGATGGTGA
Found at i:8960649 original size:88 final size:88
Alignment explanation
Indices: 8960529--8960698 Score: 270
Period size: 88 Copynumber: 1.9 Consensus size: 88
8960519 ACTATCAACT
*
8960529 ATGAAAAGGGATGGTGACGACAATCAACTATGAAAAGGGATGGTGACGACCA-TCAACTATAAAA
1 ATGAAAAGGGATGGTGACGACAATCAAATATGAAAAGGGATGGTGACGACCATTCAA-TATAAAA
*
8960593 AAGGATGGTGATGACCATTAATTG
65 AAGGATAGTGATGACCATTAATTG
* * *
8960617 ATGAAAAGGGATGGTGACGACCATCAAATATGAAAAGGGATGGTGACGACCATTGAATATGAAAA
1 ATGAAAAGGGATGGTGACGACAATCAAATATGAAAAGGGATGGTGACGACCATTCAATATAAAAA
*
8960682 GGGATAGTGATGACCAT
66 AGGATAGTGATGACCAT
8960699 CGAATATGAA
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
88 72 0.96
89 3 0.04
ACGTcount: A:0.41, C:0.12, G:0.28, T:0.20
Consensus pattern (88 bp):
ATGAAAAGGGATGGTGACGACAATCAAATATGAAAAGGGATGGTGACGACCATTCAATATAAAAA
AGGATAGTGATGACCATTAATTG
Found at i:8963185 original size:42 final size:42
Alignment explanation
Indices: 8963134--8963287 Score: 166
Period size: 42 Copynumber: 3.6 Consensus size: 42
8963124 TAAGATTATG
*
8963134 TGTAAGACCATATCTGGGATATGACATCAATATGAGATTTCA
1 TGTAAGACCATATCTGGGATATGACATCGATATGAGATTTCA
* * ** * *
8963176 TGTAAGACCATATTTGCGATATGGTATCGATATGAGACTTCG
1 TGTAAGACCATATCTGGGATATGACATCGATATGAGATTTCA
* * * * *
8963218 TGTAAGACCATAGCTGGGCTATTGGCGTCGATACGAGATTAT-A
1 TGTAAGACCATATCTGGGATA-TGACATCGATATGAGATT-TCA
*
8963261 TGTAAGACCATATCTGGGACATGACAT
1 TGTAAGACCATATCTGGGATATGACAT
8963288 TGGTACGGTA
Statistics
Matches: 89, Mismatches: 21, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
42 56 0.63
43 32 0.36
44 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGACATCGATATGAGATTTCA
Found at i:8972318 original size:18 final size:18
Alignment explanation
Indices: 8972295--8972330 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
8972285 CCTTGAATGA
8972295 TCGAGCCTCCCGAAGAAT
1 TCGAGCCTCCCGAAGAAT
8972313 TCGAGCCTCCCGAAGAAT
1 TCGAGCCTCCCGAAGAAT
8972331 ATATGTGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.33, G:0.22, T:0.17
Consensus pattern (18 bp):
TCGAGCCTCCCGAAGAAT
Found at i:8984227 original size:19 final size:20
Alignment explanation
Indices: 8984187--8984235 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
8984177 ATTGCAAAAG
8984187 AAATTCAAAATAATTTTCAA
1 AAATTCAAAATAATTTTCAA
8984207 AAATTCAAAAT-ATTTAT-AA
1 AAATTCAAAATAATTT-TCAA
8984226 AAATTTCAAA
1 AAA-TTCAAA
8984236 TTTTCTATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
19 9 0.33
20 18 0.67
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (20 bp):
AAATTCAAAATAATTTTCAA
Found at i:8985716 original size:15 final size:15
Alignment explanation
Indices: 8985676--8985719 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
8985666 TAAATAATAC
*
8985676 ATAGTAATTAGATGAAA
1 ATAGTAATT--ATTAAA
8985693 ATA-TAATTATTAAA
1 ATAGTAATTATTAAA
8985707 ATAGTAATTATTA
1 ATAGTAATTATTA
8985720 TGAAAGTGCG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 8 0.32
15 9 0.36
16 5 0.20
17 3 0.12
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39
Consensus pattern (15 bp):
ATAGTAATTATTAAA
Found at i:8990757 original size:4 final size:4
Alignment explanation
Indices: 8990748--8990773 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
8990738 TTATGAAAGC
8990748 ATAA ATAA ATAA ATAA ATAA ATAA AT
1 ATAA ATAA ATAA ATAA ATAA ATAA AT
8990774 TACAAAGGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
ATAA
Found at i:8991473 original size:3 final size:3
Alignment explanation
Indices: 8991301--8991453 Score: 98
Period size: 3 Copynumber: 51.0 Consensus size: 3
8991291 AAATAGTACC
*
8991301 AAT AAT AAT AAAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAAG
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
* * * * * ** * * *
8991348 AAT AAC AAT AAT -AC AAG AAC AA- AAG AAT GGT GAT AAT AAT ACT ACT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
8991394 ACT AAA AAT AAT AAT GAT AGT AAT AGT AAT AA- AAGT AAAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T -AAT AAT AAT
8991440 -AT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT
8991454 GATGATGATG
Statistics
Matches: 120, Mismatches: 22, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
2 7 0.06
3 105 0.88
4 6 0.05
5 2 0.02
ACGTcount: A:0.62, C:0.04, G:0.07, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:8995186 original size:31 final size:32
Alignment explanation
Indices: 8995125--8995187 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
8995115 ATAATGTTTG
*
8995125 ATATAAGATGCAAAAGATTAATAAATTTAAAT
1 ATATAAGATACAAAAGATTAATAAATTTAAAT
*
8995157 ATATAA-ATACAACAGATTAA-AAATATTAAAT
1 ATATAAGATACAAAAGATTAATAAAT-TTAAAT
8995188 GTATTTTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 4 0.14
31 18 0.64
32 6 0.21
ACGTcount: A:0.59, C:0.05, G:0.06, T:0.30
Consensus pattern (32 bp):
ATATAAGATACAAAAGATTAATAAATTTAAAT
Found at i:8996470 original size:24 final size:24
Alignment explanation
Indices: 8996443--8996489 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
8996433 CTAAACCAAC
*
8996443 CACTAACTCCATCATCCCACTTGT
1 CACTAACTCCATCACCCCACTTGT
8996467 CACTAACTCCATCACCCCACTTG
1 CACTAACTCCATCACCCCACTTG
8996490 CCTGCAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.45, G:0.04, T:0.26
Consensus pattern (24 bp):
CACTAACTCCATCACCCCACTTGT
Found at i:8996629 original size:24 final size:26
Alignment explanation
Indices: 8996579--8996631 Score: 74
Period size: 24 Copynumber: 2.1 Consensus size: 26
8996569 TTTTTGGAGA
*
8996579 AAAAAGGAGAGAGATTCAAATACAAG
1 AAAAAGGAGAGACATTCAAATACAAG
*
8996605 AAAAA-GAGAGACTTTC-AATACAAG
1 AAAAAGGAGAGACATTCAAATACAAG
8996629 AAA
1 AAA
8996632 TACACGAGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 11 0.44
25 9 0.36
26 5 0.20
ACGTcount: A:0.58, C:0.09, G:0.19, T:0.13
Consensus pattern (26 bp):
AAAAAGGAGAGACATTCAAATACAAG
Found at i:9002754 original size:25 final size:25
Alignment explanation
Indices: 9002726--9002797 Score: 81
Period size: 25 Copynumber: 2.9 Consensus size: 25
9002716 CCAAACAAAA
* *
9002726 TACGCCATAAGGGGAACATACAGAG
1 TACGCCATAAAGGCAACATACAGAG
*
9002751 TACGCCATAAAGGCAACATACAGAA
1 TACGCCATAAAGGCAACATACAGAG
* * **
9002776 TATGCCACAAAGGTGACATACA
1 TACGCCATAAAGGCAACATACA
9002798 TAATCACGTG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.43, C:0.22, G:0.21, T:0.14
Consensus pattern (25 bp):
TACGCCATAAAGGCAACATACAGAG
Found at i:9004650 original size:24 final size:25
Alignment explanation
Indices: 9004623--9004670 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
9004613 CAAGTGAGCC
*
9004623 ATATCAGGAAGCTCAT-AAGAGCTT
1 ATATCAAGAAGCTCATGAAGAGCTT
*
9004647 ATATCAAGAGGCTCATGAAGAGCT
1 ATATCAAGAAGCTCATGAAGAGCT
9004671 GCGTTTGTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.23
Consensus pattern (25 bp):
ATATCAAGAAGCTCATGAAGAGCTT
Found at i:9006531 original size:75 final size:75
Alignment explanation
Indices: 9006413--9006553 Score: 185
Period size: 75 Copynumber: 1.9 Consensus size: 75
9006403 TTTTGTCAGA
* * * * *
9006413 TAAATGCATCTTTGATTAATGTCTTGCATTAATACATTTGCAT-CTTTAGAAACTTGCATTAAAT
1 TAAATACATCTTTGATTAATGTCTTGAATTAATACACTAGCATCCTTTA-AAACCTGCATTAAAT
9006477 GTCTTGTTTAT
65 GTCTTGTTTAT
* * * *
9006488 TAAATACATCTTTGTTTAATGTTTTGAATTAATACACTAGCATCCTTTAATACCTGCATTATATG
1 TAAATACATCTTTGATTAATGTCTTGAATTAATACACTAGCATCCTTTAAAACCTGCATTAAATG
9006553 T
66 T
9006554 TCTTCATATT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
75 51 0.91
76 5 0.09
ACGTcount: A:0.30, C:0.14, G:0.11, T:0.45
Consensus pattern (75 bp):
TAAATACATCTTTGATTAATGTCTTGAATTAATACACTAGCATCCTTTAAAACCTGCATTAAATG
TCTTGTTTAT
Found at i:9013408 original size:16 final size:16
Alignment explanation
Indices: 9013389--9013420 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
9013379 AATTGTTTTA
9013389 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
9013405 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
9013421 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:9013685 original size:50 final size:50
Alignment explanation
Indices: 9013675--9014557 Score: 1766
Period size: 50 Copynumber: 17.7 Consensus size: 50
9013665 ATCAATCTGG
9013675 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
1 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
9013725 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
1 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
9013775 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
1 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
9013825 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
1 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
9013875 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
1 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
9013925 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
1 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
9013975 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
1 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
9014025 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
1 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
9014075 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
1 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
9014125 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
1 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
9014175 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
1 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
9014225 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
1 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
9014275 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
1 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
9014325 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
1 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
9014375 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
1 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
9014425 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
1 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
9014475 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
1 TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
9014525 TACACGTAGTAGCCTACACTTAGTACTACACAC
1 TACACGTAGTAGCCTACACTTAGTACTACACAC
9014558 GTGATCAAAG
Statistics
Matches: 833, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 833 1.00
ACGTcount: A:0.36, C:0.28, G:0.10, T:0.26
Consensus pattern (50 bp):
TACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTAA
Found at i:9015039 original size:19 final size:20
Alignment explanation
Indices: 9015011--9015057 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
9015001 AAGAACAGGT
9015011 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
9015032 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
9015051 TATATAT
1 TATATAT
9015058 ACTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:9018427 original size:17 final size:16
Alignment explanation
Indices: 9018401--9018435 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
9018391 TATATATTTT
9018401 TTATTTTTAATTATAA
1 TTATTTTTAATTATAA
*
9018417 TTATATTTTAATTTTAA
1 TTAT-TTTTAATTATAA
9018434 TT
1 TT
9018436 TTAATATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
TTATTTTTAATTATAA
Found at i:9018438 original size:6 final size:6
Alignment explanation
Indices: 9018399--9018440 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
9018389 TATATATATT
* * *
9018399 TTTTAT TTTTAA TTATAA TTAT-A TTTTAA TTTTAA TTTTAA T
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA T
9018441 ATAATCAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
5 4 0.12
6 28 0.88
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
TTTTAA
Found at i:9018464 original size:28 final size:29
Alignment explanation
Indices: 9018405--9018470 Score: 73
Period size: 28 Copynumber: 2.3 Consensus size: 29
9018395 TATTTTTTAT
* *
9018405 TTTTAATTATAATTATATTTTAATTTTAA
1 TTTTAATTATAATCATATTTTAATTATAA
*
9018434 TTTTAA-TATAATCA-ATTTTTATTATATA
1 TTTTAATTATAATCATATTTTAATTATA-A
9018462 TTTTCAATT
1 TTTT-AATT
9018471 TGTGTATTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
27 10 0.32
28 12 0.39
29 8 0.26
30 1 0.03
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (29 bp):
TTTTAATTATAATCATATTTTAATTATAA
Found at i:9018468 original size:20 final size:20
Alignment explanation
Indices: 9018418--9018471 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
9018408 TAATTATAAT
*
9018418 TATATTTT-AATTTTAATTT
1 TATATTTTCAATTTTAATTA
** *
9018437 TAATATAATCAATTTTTATTA
1 T-ATATTTTCAATTTTAATTA
9018458 TATATTTTCAATTT
1 TATATTTTCAATTT
9018472 GTGTATTGTT
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
19 1 0.04
20 16 0.59
21 10 0.37
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (20 bp):
TATATTTTCAATTTTAATTA
Found at i:9018554 original size:42 final size:42
Alignment explanation
Indices: 9018468--9018555 Score: 106
Period size: 42 Copynumber: 2.1 Consensus size: 42
9018458 TATATTTTCA
**
9018468 ATTTGTGTATTGTTTTAAGAATTGTTTTAATATCATTTTTTT
1 ATTTGTGTATTGTTTTAAGAATTGTTTTAATATCATTTGATT
* * * *
9018510 ATTTGTTTATTGTTTTAATATTTGTTTTAA-ATGTATTTGATT
1 ATTTGTGTATTGTTTTAAGAATTGTTTTAATAT-CATTTGATT
9018552 ATTT
1 ATTT
9018556 AATATATTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
41 2 0.05
42 37 0.95
ACGTcount: A:0.24, C:0.01, G:0.11, T:0.64
Consensus pattern (42 bp):
ATTTGTGTATTGTTTTAAGAATTGTTTTAATATCATTTGATT
Found at i:9019662 original size:16 final size:16
Alignment explanation
Indices: 9019641--9019671 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9019631 TTAAAATATA
9019641 TTAAAAATTATTATTT
1 TTAAAAATTATTATTT
*
9019657 TTAAAATTTATTATT
1 TTAAAAATTATTATT
9019672 CAAATAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TTAAAAATTATTATTT
Found at i:9031942 original size:30 final size:30
Alignment explanation
Indices: 9031857--9031953 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
9031847 TAAACTAAAA
* *
9031857 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
* * * * *
9031887 TGAGCTGAGATTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
*
9031917 TGAGCTAAGGTTTAGCTCGTGAGCTGAA-T
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
9031946 ATGAGCTA
1 -TGAGCTA
9031954 GGAGTGAGCT
Statistics
Matches: 53, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 1 0.02
30 52 0.98
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
Found at i:9034238 original size:30 final size:30
Alignment explanation
Indices: 9034184--9034268 Score: 109
Period size: 30 Copynumber: 2.8 Consensus size: 30
9034174 TTCTTTTGTT
*
9034184 TCAATTTCTTTTTCATCTTCTTTTTCACTC
1 TCAATTTCTTTTTCATCTTCTTTTTCAATC
**
9034214 TCAAATTTCTTTTTGTTC-TCTTTTTCAATC
1 TC-AATTTCTTTTTCATCTTCTTTTTCAATC
* *
9034244 TCATTTTCTTTTTCATTTTCTTTTT
1 TCAATTTCTTTTTCATCTTCTTTTT
9034269 GCTTTTCAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
29 11 0.24
30 22 0.48
31 13 0.28
ACGTcount: A:0.13, C:0.21, G:0.01, T:0.65
Consensus pattern (30 bp):
TCAATTTCTTTTTCATCTTCTTTTTCAATC
Found at i:9034275 original size:12 final size:12
Alignment explanation
Indices: 9034244--9034268 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9034234 TTTTTCAATC
9034244 TCATTTTCTTTT
1 TCATTTTCTTTT
9034256 TCATTTTCTTTT
1 TCATTTTCTTTT
9034268 T
1 T
9034269 GCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:9034286 original size:12 final size:12
Alignment explanation
Indices: 9034271--9034301 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
9034261 TTCTTTTTGC
9034271 TTTTCAAAGGCT
1 TTTTCAAAGGCT
9034283 TTTTCAAAGGCT
1 TTTTCAAAGGCT
9034295 TTTTCAA
1 TTTTCAA
9034302 GTTCTCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:9034381 original size:5 final size:5
Alignment explanation
Indices: 9034352--9034411 Score: 52
Period size: 5 Copynumber: 11.4 Consensus size: 5
9034342 TTGCCTCTCA
*
9034352 TTTCT TTT-T ATTTCAT TTTCAT TTTCT TTT-T CTTCT TTTGCTT TTTCT
1 TTTCT TTTCT -TTTC-T TTTC-T TTTCT TTTCT TTTCT TTT-C-T TTTCT
9034400 TTTCT TTTCT TT
1 TTTCT TTTCT TT
9034412 ATTTTCTCTT
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
4 4 0.09
5 26 0.55
6 12 0.26
7 5 0.11
ACGTcount: A:0.05, C:0.17, G:0.02, T:0.77
Consensus pattern (5 bp):
TTTCT
Found at i:9034389 original size:31 final size:30
Alignment explanation
Indices: 9034353--9034411 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
9034343 TGCCTCTCAT
9034353 TTCTTTT-TATTTCATTTTCATTTTCTTTTTC
1 TTCTTTTCTATTTC-TTTTC-TTTTCTTTTTC
*
9034384 TTCTTTTGCTTTTTCTTTTCTTTTCTTT
1 TTCTTTT-CTATTTCTTTTCTTTTCTTT
9034412 ATTTTCTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
31 15 0.60
32 5 0.20
33 5 0.20
ACGTcount: A:0.05, C:0.17, G:0.02, T:0.76
Consensus pattern (30 bp):
TTCTTTTCTATTTCTTTTCTTTTCTTTTTC
Found at i:9034421 original size:21 final size:21
Alignment explanation
Indices: 9034367--9034422 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 21
9034357 TTTTATTTCA
*
9034367 TTTTCATTTTCT-TTTTCTTC
1 TTTTGATTTTCTCTTTTCTTC
*
9034387 TTTTGCTTTT-TCTTTTCTT-
1 TTTTGATTTTCTCTTTTCTTC
*
9034406 TTCTTTATTTTCTCTTT
1 TT-TTGATTTTCTCTTT
9034423 ACAAGAATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
19 3 0.10
20 21 0.72
21 5 0.17
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (21 bp):
TTTTGATTTTCTCTTTTCTTC
Found at i:9035889 original size:32 final size:33
Alignment explanation
Indices: 9035823--9035935 Score: 115
Period size: 32 Copynumber: 3.5 Consensus size: 33
9035813 AAGAGCAATA
* * ** *
9035823 TTGTTATCATTTAACAAGATG-CTAGTCGATAT
1 TTGTTATCATTTCACAAAATGAAAAGTTGATAT
* * *
9035855 TTGTTATCATTTTATAAAAT-TAAAGTTG-TAAT
1 TTGTTATCATTTCACAAAATGAAAAGTTGAT-AT
*
9035887 TTGTTATAATTTCACAAAATGAAAAGTTGATAT
1 TTGTTATCATTTCACAAAATGAAAAGTTGATAT
9035920 TTGTTATCATTTCACA
1 TTGTTATCATTTCACA
9035936 GAACCGTACG
Statistics
Matches: 66, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
31 1 0.02
32 40 0.61
33 24 0.36
34 1 0.02
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.44
Consensus pattern (33 bp):
TTGTTATCATTTCACAAAATGAAAAGTTGATAT
Found at i:9047092 original size:49 final size:49
Alignment explanation
Indices: 9046967--9047244 Score: 385
Period size: 49 Copynumber: 5.6 Consensus size: 49
9046957 ATAACTTCGA
* * * **
9046967 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GG
9047017 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGG
* * * * * **
9047066 TCGCATGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GG
* *
9047116 TCACGTGTGTAGTACTAAGTGCGGGCTACTACGTGTTCCGGATAATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGG
9047165 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGG
* * *
9047214 TCGCATGTGTAGTACTAAGTGTAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
9047245 TGCGTACCAG
Statistics
Matches: 201, Mismatches: 26, Indels: 3
0.87 0.11 0.01
Matches are distributed among these distances:
49 119 0.59
50 82 0.41
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (49 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGG
Found at i:9047110 original size:99 final size:99
Alignment explanation
Indices: 9046967--9047244 Score: 432
Period size: 99 Copynumber: 2.8 Consensus size: 99
9046957 ATAACTTCGA
*
9046967 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
9047032 TAAGTGCAGGCTACTACGTGTACCGGATAATTGG
66 TAAGTGCAGGCTACTACGTGTACCGGATAATTGG
*
9047066 TCGCATGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
* *
9047131 TAAGTGCGGGCTACTACGTGTTCCGGATAATTGG
66 TAAGTGCAGGCTACTACGTGTACCGGATAATTGG
* * * * ** * *
9047165 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
*
9047229 TAAGTGTAGGCTACTA
66 TAAGTGCAGGCTACTA
9047245 TGCGTACCAG
Statistics
Matches: 164, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
98 29 0.18
99 135 0.82
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (99 bp):
TCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
TAAGTGCAGGCTACTACGTGTACCGGATAATTGG
Found at i:9047236 original size:148 final size:149
Alignment explanation
Indices: 9046967--9047244 Score: 488
Period size: 148 Copynumber: 1.9 Consensus size: 149
9046957 ATAACTTCGA
* **
9046967 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTAGGTCACGTGTGTAGTAC
9047032 TAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGTAGGCTACTA
66 TAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGTAGGCTACTA
9047097 CGTGTATCAGATGGTTAGG
131 CGTGTATCAGATGGTTAGG
* *
9047116 TCACGTGTGTAGTACTAAGTGCGGGCTACTACGTGT-TCCGGATAATT-GGTCACGTGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAT-CAGATAATTAGGTCACGTGTGTAGTA
9047179 CTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGTAGGCTACT
65 CTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGTAGGCTACT
9047244 A
130 A
9047245 TGCGTACCAG
Statistics
Matches: 123, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
148 83 0.67
149 40 0.33
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (149 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTAGGTCACGTGTGTAGTAC
TAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGTAGGCTACTA
CGTGTATCAGATGGTTAGG
Found at i:9049981 original size:5 final size:6
Alignment explanation
Indices: 9049947--9050014 Score: 56
Period size: 5 Copynumber: 11.7 Consensus size: 6
9049937 TAATCAGTTC
* *
9049947 AATATT AA-ATT AATATA AATATT -ATATT AAT-TT AATATT AAGA-T
1 AATATT AATATT AATATT AATATT AATATT AATATT AATATT AATATT
9049991 AATCACTTT AATATT AA-ATT AATA
1 AAT-A--TT AATATT AATATT AATA
9050015 AAATACTATT
Statistics
Matches: 50, Mismatches: 4, Indels: 16
0.71 0.06 0.23
Matches are distributed among these distances:
5 23 0.46
6 22 0.44
8 1 0.02
9 4 0.08
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.44
Consensus pattern (6 bp):
AATATT
Found at i:9050013 original size:20 final size:18
Alignment explanation
Indices: 9049947--9050072 Score: 68
Period size: 20 Copynumber: 6.9 Consensus size: 18
9049937 TAATCAGTTC
*
9049947 AATATTAAATTAATA-TA
1 AATATTAAATTAATATTT
*
9049964 AATATTATATT-A-ATTT
1 AATATTAAATTAATATTT
9049980 AATATTAAGA-TAATCACTTT
1 AATATTAA-ATTAAT-A-TTT
**
9050000 AATATTAAATTAATAAAAT
1 AATATTAAATTAAT-ATTT
*
9050019 ACTATTAAGA-TAAGTA-TT
1 AATATTAA-ATTAA-TATTT
*
9050037 AA-ATTAAATTTAATATTA
1 AATATTAAA-TTAATATTT
*
9050055 AACTATTAAAATAATATT
1 AA-TATTAAATTAATATT
9050073 ATTTTTAGAA
Statistics
Matches: 84, Mismatches: 11, Indels: 26
0.69 0.09 0.21
Matches are distributed among these distances:
15 1 0.01
16 11 0.13
17 19 0.23
18 8 0.10
19 21 0.25
20 24 0.29
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.42
Consensus pattern (18 bp):
AATATTAAATTAATATTT
Found at i:9050060 original size:37 final size:36
Alignment explanation
Indices: 9049998--9050073 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
9049988 GATAATCACT
*
9049998 TTAATATTAAATTAATAAAATACTATTAAGATAAGTA
1 TTAATATTAAATTAATAAAATACTATTAAAATAA-TA
*
9050035 TTAA-ATTAAATTTAATATTAA-ACTATTAAAATAATA
1 TTAATATTAAA-TTAATA-AAATACTATTAAAATAATA
9050071 TTA
1 TTA
9050074 TTTTTAGAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 11 0.31
37 22 0.63
38 2 0.06
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (36 bp):
TTAATATTAAATTAATAAAATACTATTAAAATAATA
Found at i:9052125 original size:18 final size:17
Alignment explanation
Indices: 9052099--9052132 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
9052089 CATATCGCAA
9052099 GCCCATGTGGGCCCACAC
1 GCCCATGT-GGCCCACAC
*
9052117 GCCCGTGTGGCCCACA
1 GCCCATGTGGCCCACA
9052133 TAGCCCAGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.15, C:0.44, G:0.29, T:0.12
Consensus pattern (17 bp):
GCCCATGTGGCCCACAC
Found at i:9052138 original size:18 final size:18
Alignment explanation
Indices: 9052096--9052139 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
9052086 ACCCATATCG
9052096 CAAGCCCATGTGGGCCCA
1 CAAGCCCATGTGGGCCCA
* *
9052114 CACGCCCGTGT-GGCCCA
1 CAAGCCCATGTGGGCCCA
9052131 CATAGCCCA
1 CA-AGCCCA
9052140 GACATGGCCT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.20, C:0.43, G:0.25, T:0.11
Consensus pattern (18 bp):
CAAGCCCATGTGGGCCCA
Found at i:9059601 original size:23 final size:22
Alignment explanation
Indices: 9059575--9059698 Score: 108
Period size: 23 Copynumber: 5.5 Consensus size: 22
9059565 AGCTCATTTA
9059575 AGCTTACTGATTTAGCTCGAAAG
1 AGCTTACTG-TTTAGCTCGAAAG
*
9059598 AGCTTACTGTTCAGCTC-AATAG
1 AGCTTACTGTTTAGCTCGAA-AG
* * * *
9059620 AGCTTACCGTTTCAACTCGTATG
1 AGCTTACTGTTT-AGCTCGAAAG
* * *
9059643 AGCTTACTGTTCATCTCGATAG
1 AGCTTACTGTTTAGCTCGAAAG
*
9059665 AGCTTACCGTTTTAGCTC-AATAG
1 AGCTTACTG-TTTAGCTCGAA-AG
9059688 AGCTTACTGTT
1 AGCTTACTGTT
9059699 CATCAGCTCA
Statistics
Matches: 79, Mismatches: 17, Indels: 11
0.74 0.16 0.10
Matches are distributed among these distances:
21 2 0.03
22 36 0.46
23 40 0.51
24 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.35
Consensus pattern (22 bp):
AGCTTACTGTTTAGCTCGAAAG
Found at i:9059624 original size:45 final size:44
Alignment explanation
Indices: 9059549--9059700 Score: 164
Period size: 45 Copynumber: 3.4 Consensus size: 44
9059539 TACAGGTCAG
* * *
9059549 AAGAGCATACTGTTTCAGCTCATTTA-AGCTTACTGATTTAGCTCGA
1 AAGAGCTTACTG-TTCAGCTCA-ATAGAGCTTACCG-TTTAGCTCGA
* *
9059595 AAGAGCTTACTGTTCAGCTCAATAGAGCTTACCGTTTCAACTCGT
1 AAGAGCTTACTGTTCAGCTCAATAGAGCTTACCGTTT-AGCTCGA
* * *
9059640 ATGAGCTTACTGTTCATCTCGATAGAGCTTACCGTTTTAGCTC-A
1 AAGAGCTTACTGTTCAGCTCAATAGAGCTTACCG-TTTAGCTCGA
9059684 ATAGAGCTTACTGTTCA
1 A-AGAGCTTACTGTTCA
9059701 TCAGCTCAGG
Statistics
Matches: 91, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
44 6 0.07
45 71 0.78
46 14 0.15
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (44 bp):
AAGAGCTTACTGTTCAGCTCAATAGAGCTTACCGTTTAGCTCGA
Found at i:9065380 original size:18 final size:18
Alignment explanation
Indices: 9065357--9065393 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
9065347 TACCATGTAA
9065357 ATGGTATATTAACAACAT
1 ATGGTATATTAACAACAT
9065375 ATGGTATATTAACAACAT
1 ATGGTATATTAACAACAT
9065393 A
1 A
9065394 AGGACCTCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (18 bp):
ATGGTATATTAACAACAT
Found at i:9065517 original size:13 final size:13
Alignment explanation
Indices: 9065501--9065525 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9065491 CACACAAACG
9065501 ATTAAATTTTCAT
1 ATTAAATTTTCAT
9065514 ATTAAATTTTCA
1 ATTAAATTTTCA
9065526 CACATATTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTAAATTTTCAT
Found at i:9068353 original size:27 final size:27
Alignment explanation
Indices: 9068314--9068387 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
9068304 TCTCGCCCAT
* * *
9068314 AGGGGCATTTCGGTAATTTTACAAGTCG
1 AGGGGTATTTCGGTAATTTCACAAAT-G
*
9068342 A-GGGTATTTCGGTAATTTCACAAATT
1 AGGGGTATTTCGGTAATTTCACAAATG
*
9068368 AGGGGTATTTTGGTAATTTC
1 AGGGGTATTTCGGTAATTTC
9068388 CCTTTATTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
26 1 0.03
27 38 0.95
28 1 0.03
ACGTcount: A:0.26, C:0.11, G:0.26, T:0.38
Consensus pattern (27 bp):
AGGGGTATTTCGGTAATTTCACAAATG
Found at i:9073712 original size:40 final size:40
Alignment explanation
Indices: 9073654--9073880 Score: 400
Period size: 40 Copynumber: 5.7 Consensus size: 40
9073644 AGCATTGGAT
9073654 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
9073694 TATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
9073734 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * *
9073774 TATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATGT
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
9073814 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
9073854 TATGTCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
9073881 ATGTGTTTGC
Statistics
Matches: 177, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 177 1.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:9080813 original size:37 final size:37
Alignment explanation
Indices: 9080763--9080841 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
9080753 TTATTACGAA
* * *
9080763 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
9080800 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
9080837 GTCTT
1 GTCTT
9080842 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:9081070 original size:47 final size:47
Alignment explanation
Indices: 9080959--9081369 Score: 768
Period size: 47 Copynumber: 8.7 Consensus size: 47
9080949 GCCCTTCGGG
*
9080959 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
9081009 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
9081056 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
9081103 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
9081150 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
9081197 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
9081244 ACTTTCACATTCATCACATCGGCCATTGGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
9081291 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
9081338 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
9081370 ATACTATCAT
Statistics
Matches: 356, Mismatches: 5, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
47 318 0.89
49 34 0.10
50 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:9081307 original size:25 final size:25
Alignment explanation
Indices: 9081231--9081309 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
9081221 ATTAGGCCTT
9081231 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
**** ***
9081256 ATCACAT-CGGCCA-TTGGGCATT-
1 ATCACATATATACACTTTCACATTC
9081278 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
9081303 ATCACAT
1 ATCACAT
9081310 CGGCCATTAG
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:9083785 original size:35 final size:35
Alignment explanation
Indices: 9083746--9083814 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
9083736 TCCGACTAGG
9083746 GTCACTTTAGGGGTGTCACAACTCTTCCCCCCTTC
1 GTCACTTTAGGGGTGTCACAACTCTTCCCCCCTTC
*
9083781 GTCACTTTAGTGGTGTCACAACTCTTCCCCCCTT
1 GTCACTTTAGGGGTGTCACAACTCTTCCCCCCTT
9083815 TAGGGATTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.14, C:0.36, G:0.16, T:0.33
Consensus pattern (35 bp):
GTCACTTTAGGGGTGTCACAACTCTTCCCCCCTTC
Found at i:9085221 original size:40 final size:40
Alignment explanation
Indices: 9084935--9085275 Score: 366
Period size: 40 Copynumber: 8.5 Consensus size: 40
9084925 AGCATGATTA
* * * *
9084935 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* ** * *
9084975 CTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
9085015 CCCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* * *
9085055 CTCCTCGGGACTTAGCCCGGATATATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
9085095 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* * *
9085135 CTCTTCGGGACTTAGCTCGGATACATCGCTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
** * * *
9085175 CTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAATG
* ** *
9085216 C-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAG
1 CTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACGAATG
9085256 C-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
9085276 CATCATTCGA
Statistics
Matches: 255, Mismatches: 41, Indels: 10
0.83 0.13 0.03
Matches are distributed among these distances:
39 3 0.01
40 233 0.91
41 19 0.07
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
Found at i:9085622 original size:29 final size:29
Alignment explanation
Indices: 9085583--9085661 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
9085573 CTTAATAATC
*
9085583 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
* *
9085613 AACTCGCACACTTGGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
9085642 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
9085662 ATCTCACAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
28 3 0.07
29 36 0.86
30 3 0.07
ACGTcount: A:0.27, C:0.33, G:0.16, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:9096718 original size:29 final size:29
Alignment explanation
Indices: 9096648--9096712 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
9096638 AAAGCATGAC
9096648 TATGAATGTGATTTGGGCCTAATCGGCCA
1 TATGAATGTGATTTGGGCCTAATCGGCCA
* *
9096677 TACGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATCGGCCA
9096706 TATGAAT
1 TATGAAT
9096713 AAGATTGGGC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATCGGCCA
Found at i:9112440 original size:29 final size:29
Alignment explanation
Indices: 9112408--9112464 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
9112398 GCATGACTAT
*
9112408 GAATGTGATTTGGGCCTAATGGGCCATAC
1 GAATGTGATTTAGGCCTAATGGGCCATAC
9112437 GAATGTGATTTAGGCCTAATGGGCCATA
1 GAATGTGATTTAGGCCTAATGGGCCATA
9112465 TGAGTGAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (29 bp):
GAATGTGATTTAGGCCTAATGGGCCATAC
Found at i:9114632 original size:15 final size:15
Alignment explanation
Indices: 9114612--9114642 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
9114602 TAAAAAGTTT
9114612 ATTTTAATCAAGATG
1 ATTTTAATCAAGATG
9114627 ATTTTAATCAAGATG
1 ATTTTAATCAAGATG
9114642 A
1 A
9114643 CATAATTGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.13, T:0.39
Consensus pattern (15 bp):
ATTTTAATCAAGATG
Found at i:9122715 original size:20 final size:20
Alignment explanation
Indices: 9122692--9122731 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
9122682 ACATTAAGTT
9122692 TAAG-TTTATTACAAACTTAC
1 TAAGCTTTA-TACAAACTTAC
*
9122712 TAAGCTTTATACAAGCTTAC
1 TAAGCTTTATACAAACTTAC
9122732 CTCATTTTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.38, C:0.17, G:0.07, T:0.38
Consensus pattern (20 bp):
TAAGCTTTATACAAACTTAC
Found at i:9123253 original size:10 final size:10
Alignment explanation
Indices: 9123238--9123264 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
9123228 TGAATAGGCA
9123238 TAAATGGGTG
1 TAAATGGGTG
9123248 TAAATGGGTG
1 TAAATGGGTG
9123258 TAAATGG
1 TAAATGG
9123265 TATGGCTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.37, T:0.30
Consensus pattern (10 bp):
TAAATGGGTG
Found at i:9127726 original size:27 final size:27
Alignment explanation
Indices: 9127635--9127701 Score: 125
Period size: 27 Copynumber: 2.5 Consensus size: 27
9127625 TAGGGCAAAT
*
9127635 CAGTCATTTTACCTTACAGGGGTATTA
1 CAGTCATTTTACCCTACAGGGGTATTA
9127662 CAGTCATTTTACCCTACAGGGGTATTA
1 CAGTCATTTTACCCTACAGGGGTATTA
9127689 CAGTCATTTTACC
1 CAGTCATTTTACC
9127702 GTATAGGGAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.36
Consensus pattern (27 bp):
CAGTCATTTTACCCTACAGGGGTATTA
Found at i:9127748 original size:27 final size:27
Alignment explanation
Indices: 9127718--9127818 Score: 150
Period size: 27 Copynumber: 3.7 Consensus size: 27
9127708 GGATATTTTG
9127718 GTCATTTTATCTCATAAGGGCAAAATC
1 GTCATTTTATCTCATAAGGGCAAAATC
* *
9127745 GTCATTTTATCACATAAGGGAAAAATC
1 GTCATTTTATCTCATAAGGGCAAAATC
* *
9127772 GTCATTTTATCGCATAAGGGCAAAATA
1 GTCATTTTATCTCATAAGGGCAAAATC
9127799 GTCA-TTTAGTCTCATAAGGG
1 GTCATTTTA-TCTCATAAGGG
9127819 TTCAAGTACG
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
26 4 0.06
27 63 0.94
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.32
Consensus pattern (27 bp):
GTCATTTTATCTCATAAGGGCAAAATC
Found at i:9127972 original size:17 final size:18
Alignment explanation
Indices: 9127924--9127972 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
9127914 ATTATGTGGG
9127924 CCTATGTGGGCCCACACC
1 CCTATGTGGGCCCACACC
9127942 CCTATGTGGGCCCACACC
1 CCTATGTGGGCCCACACC
9127960 CCTATGT-GGCCCA
1 CCTATGTGGGCCCA
9127973 ATAAGCCCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
17 6 0.19
18 25 0.81
ACGTcount: A:0.16, C:0.43, G:0.22, T:0.18
Consensus pattern (18 bp):
CCTATGTGGGCCCACACC
Found at i:9134900 original size:39 final size:40
Alignment explanation
Indices: 9134855--9135039 Score: 178
Period size: 40 Copynumber: 4.7 Consensus size: 40
9134845 GCTCCTCGTT
* * *
9134855 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
9134895 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
9134934 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * * * *
9134974 CAAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAAC-TCGCA
* *
9135015 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAACCCGGA
9135040 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 37 0.30
40 74 0.61
41 11 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:9134955 original size:40 final size:39
Alignment explanation
Indices: 9134822--9135039 Score: 165
Period size: 40 Copynumber: 5.5 Consensus size: 39
9134812 AAATCACGTA
* * **
9134822 CCTTCGGGATTTAA-CCGGATATAGCTCCTCGTTCA-AATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCG--CACAATG
* * * * *
9134861 CCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAATG
* *
9134900 CCTTCGGGACATAACCCGGATTTAACAACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCAC-AATG
* * *
9134940 CCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCAC-AATG
* * * * *
9134980 CCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCACAAAG
1 CCTTCGGGA-CTTAACCCGGATTTA-GCAAC-TCGCACAATG
*
9135020 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
9135040 CAGCATTCAA
Statistics
Matches: 143, Mismatches: 29, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
38 2 0.01
39 48 0.34
40 85 0.59
41 8 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (39 bp):
CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAATG
Found at i:9149655 original size:274 final size:274
Alignment explanation
Indices: 9149166--9149711 Score: 1083
Period size: 274 Copynumber: 2.0 Consensus size: 274
9149156 GGATTTTTAG
9149166 AGGGCATCTCTTACACACTTTATCAACAAGTACGCATTGACCCAAAGGGTTTGACACTCGAATTA
1 AGGGCATCTCTTACACACTTTATCAACAAGTACGCATTGACCCAAAGGGTTTGACACTCGAATTA
9149231 CGAACTCAGTAGACTCAACAGGTAGAGTCTTACTGGATGCTAAGGTTTCGCATACATATGAATGA
66 CGAACTCAGTAGACTCAACAGGTAGAGTCTTACTGGATGCTAAGGTTTCGCATACATATGAATGA
9149296 GTAGAGCCAGGGTCAATCAATGCAATCACATTAGTATCAAAGAGAGTGAAGGTACCAGTGATGAC
131 GTAGAGCCAGGGTCAATCAATGCAATCACATTAGTATCAAAGAGAGTGAAGGTACCAGTGATGAC
9149361 GTCAGGGGAGGATGCCTCCTCTCGTGCGCGAATGGCATATGCTCTAGCAGGAGTACGGTTCTCGG
196 GTCAGGGGAGGATGCCTCCTCTCGTGCGCGAATGGCATATGCTCTAGCAGGAGTACGGTTCTCGG
*
9149426 CTCGGACAACCGCA
261 CTCGAACAACCGCA
9149440 AGGGCATCTCTTACACACTTTATCAACAAGTACGCATTGACCCAAAGGGTTTGACACTCGAATTA
1 AGGGCATCTCTTACACACTTTATCAACAAGTACGCATTGACCCAAAGGGTTTGACACTCGAATTA
9149505 CGAACTCAGTAGACTCAACAGGTAGAGTCTTACTGGATGCTAAGGTTTCGCATACATATGAATGA
66 CGAACTCAGTAGACTCAACAGGTAGAGTCTTACTGGATGCTAAGGTTTCGCATACATATGAATGA
9149570 GTAGAGCCAGGGTCAATCAATGCAATCACATTAGTATCAAAGAGAGTGAAGGTACCAGTGATGAC
131 GTAGAGCCAGGGTCAATCAATGCAATCACATTAGTATCAAAGAGAGTGAAGGTACCAGTGATGAC
9149635 GTCAGGGGAGGATGCCTCCTCTCGTGCGCGAATGGCATATGCTCTAGCAGGAGTACGGTTCTCGG
196 GTCAGGGGAGGATGCCTCCTCTCGTGCGCGAATGGCATATGCTCTAGCAGGAGTACGGTTCTCGG
9149700 CTCGAACAACCG
261 CTCGAACAACCG
9149712 TATCAGAGGT
Statistics
Matches: 271, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
274 271 1.00
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (274 bp):
AGGGCATCTCTTACACACTTTATCAACAAGTACGCATTGACCCAAAGGGTTTGACACTCGAATTA
CGAACTCAGTAGACTCAACAGGTAGAGTCTTACTGGATGCTAAGGTTTCGCATACATATGAATGA
GTAGAGCCAGGGTCAATCAATGCAATCACATTAGTATCAAAGAGAGTGAAGGTACCAGTGATGAC
GTCAGGGGAGGATGCCTCCTCTCGTGCGCGAATGGCATATGCTCTAGCAGGAGTACGGTTCTCGG
CTCGAACAACCGCA
Found at i:9157196 original size:28 final size:28
Alignment explanation
Indices: 9157165--9157321 Score: 145
Period size: 28 Copynumber: 5.5 Consensus size: 28
9157155 CTGACTGATT
*
9157165 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * *
9157193 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTCGATTA-AAGAAC
*
9157222 TCGCACACATAGTGCTCGATTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * ** *
9157250 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTG-CTCGATTAAAGAAC
* * *
9157279 TGGCACACATAGTGCTCGGTTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* *
9157307 TTGCACACACAGTGC
1 TCGCACACATAGTGC
9157322 CTCATGATTC
Statistics
Matches: 101, Mismatches: 24, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
27 1 0.01
28 55 0.54
29 44 0.44
30 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGATTAAAGAAC
Found at i:9157225 original size:29 final size:29
Alignment explanation
Indices: 9157192--9157293 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
9157182 GATTAAAGAA
9157192 CTCGCACACATAGTGCCTCAATTACCAAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
* **
9157221 CTCGCACACATAGTG-CTCGATTGAAGAA-
1 CTCGCACACATAGTGCCTCAATT-ACCAAT
* **
9157249 CTCGCACACATAGTGCCTCAACTACTGAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
*
9157278 CTGGCACACATAGTGC
1 CTCGCACACATAGTGC
9157294 TCGGTTGAAG
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
28 23 0.38
29 38 0.62
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACCAAT
Found at i:9157232 original size:57 final size:57
Alignment explanation
Indices: 9157165--9157325 Score: 241
Period size: 57 Copynumber: 2.8 Consensus size: 57
9157155 CTGACTGATT
* * *
9157165 TCGCACACATAGCGCTCGATTAAAGAACTCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
**
9157222 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* * * *
9157279 TGGCACACATAGTGCTCGGTTGAAGAACTTGCACACACAGTGCCTCA
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCA
9157326 TGATTCCAGC
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 95 1.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (57 bp):
TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
Found at i:9157398 original size:40 final size:40
Alignment explanation
Indices: 9157353--9158284 Score: 1747
Period size: 40 Copynumber: 23.3 Consensus size: 40
9157343 CCTTCGAGGT
* *
9157353 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
* * *
9157393 TTAGCCCGGATATATCACCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
9157433 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
9157473 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
9157513 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
9157553 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
9157593 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
9157633 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
9157673 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
9157713 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
9157753 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
9157793 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
9157833 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
9157873 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
9157913 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
9157953 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
9157993 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
9158033 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
9158073 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
9158113 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
*
9158153 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
* * * *
9158193 TTAGCCCGGATATATCGCTAGCACGAATGCTCTTCGAGAC
1 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
* * *
9158233 TTAGCTCGGATACATCACTAGCATGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
9158273 TTAGCCCGGATA
1 TTAGCCCGGATA
9158285 TAACATACTG
Statistics
Matches: 878, Mismatches: 14, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 878 1.00
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATACATCACTAGCACGCATGCTCTTCGGGAC
Found at i:9162493 original size:5 final size:5
Alignment explanation
Indices: 9162458--9162486 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
9162448 CCAATTTGAG
9162458 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
9162487 AATAAAAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:9168072 original size:39 final size:40
Alignment explanation
Indices: 9167972--9168156 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
9167962 TTGAATGATG
* * *
9167972 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
** *
9168011 ATCCGAACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
9168052 TCCGGGCTAAG-CCCGAAGGCATTTGCGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
9168091 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
9168130 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
9168157 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 35 0.29
40 75 0.62
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:9168178 original size:79 final size:79
Alignment explanation
Indices: 9168025--9168179 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
9168015 GAACTAAGAT
* * **
9168025 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGCGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
9168090 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
9168104 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
9168167 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
9168180 ATTCTAAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.59
80 25 0.38
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:9177275 original size:222 final size:222
Alignment explanation
Indices: 9176889--9177334 Score: 883
Period size: 222 Copynumber: 2.0 Consensus size: 222
9176879 CAAACAAAAA
9176889 CACACATAGTAAGCTATCATTGCTCAGTAAGTCATAAGCAAATAAATAATTCAATGTTAATATCA
1 CACACATAGTAAGCTATCATTGCTCAGTAAGTCATAAGCAAATAAATAATTCAATGTTAATATCA
9176954 ACTCAACTTAACCAAACTAATTTATGCTATCATAATCACATTTAATTTCAAGATCAAGATTTCAT
66 ACTCAACTTAACCAAACTAATTTATGCTATCATAATCACATTTAATTTCAAGATCAAGATTTCAT
*
9177019 ATATAACATATACTTCCGTATACAAACTATACCTTGGCCGAATATGCATGTTTCTATTATCAAAG
131 ATATAACATATACTTCCGTATACAAACTATACCTTGGCCGAATATACATGTTTCTATTATCAAAG
9177084 TAACATTCAATTTCAAAACCATAGTAC
196 TAACATTCAATTTCAAAACCATAGTAC
9177111 CACACATAGTAAGCTATCATTGCTCAGTAAGTCATAAGCAAATAAATAATTCAATGTTAATATCA
1 CACACATAGTAAGCTATCATTGCTCAGTAAGTCATAAGCAAATAAATAATTCAATGTTAATATCA
9177176 ACTCAACTTAACCAAACTAATTTATGCTATCATAATCACATTTAATTTCAAGATCAAGATTTCAT
66 ACTCAACTTAACCAAACTAATTTATGCTATCATAATCACATTTAATTTCAAGATCAAGATTTCAT
9177241 ATATAACATATACTTCCGTATACAAACTATACCTTGGCCGAATATACATGTTTCTATTATCAAAG
131 ATATAACATATACTTCCGTATACAAACTATACCTTGGCCGAATATACATGTTTCTATTATCAAAG
9177306 TAACATTCAATTTCAAAACCATAGTAC
196 TAACATTCAATTTCAAAACCATAGTAC
9177333 CA
1 CA
9177335 TTTATAACCG
Statistics
Matches: 223, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
222 223 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (222 bp):
CACACATAGTAAGCTATCATTGCTCAGTAAGTCATAAGCAAATAAATAATTCAATGTTAATATCA
ACTCAACTTAACCAAACTAATTTATGCTATCATAATCACATTTAATTTCAAGATCAAGATTTCAT
ATATAACATATACTTCCGTATACAAACTATACCTTGGCCGAATATACATGTTTCTATTATCAAAG
TAACATTCAATTTCAAAACCATAGTAC
Found at i:9177738 original size:41 final size:43
Alignment explanation
Indices: 9177634--9177788 Score: 134
Period size: 41 Copynumber: 3.6 Consensus size: 43
9177624 TCGTACAATG
* * * ** *
9177634 CCAATGTCCCAGACGTGGTCTTACATGCTATCTCATATCGATG
1 CCAATGTCCCAGACATGGTCTTACACGCAATCAAATATCGATA
* *
9177677 CCACTGTCCCAGACAGGGTCTTACACG-AATCAAATAT-GATA
1 CCAATGTCCCAGACATGGTCTTACACGCAATCAAATATCGATA
* * * *
9177718 CTAATGTCCCAGACATGGTCTTACACGTAACCACATATATCGATG
1 CCAATGTCCCAGACATGGTCTTACACGCAATCA-A-ATATCGATA
* * * *
9177763 CCGACGTCCCAGACGTAGTCTTACAC
1 CCAATGTCCCAGACATGGTCTTACAC
9177789 AAGAACACAT
Statistics
Matches: 90, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
41 27 0.30
42 11 0.12
43 24 0.27
44 4 0.04
45 24 0.27
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.25
Consensus pattern (43 bp):
CCAATGTCCCAGACATGGTCTTACACGCAATCAAATATCGATA
Found at i:9178041 original size:15 final size:15
Alignment explanation
Indices: 9178017--9178046 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9178007 GTTCTTGATC
9178017 TAAACATATTCAAAT
1 TAAACATATTCAAAT
*
9178032 TAAACTTATTCAAAT
1 TAAACATATTCAAAT
9178047 ATATTTTCAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAACATATTCAAAT
Found at i:9188568 original size:47 final size:47
Alignment explanation
Indices: 9188510--9188676 Score: 182
Period size: 47 Copynumber: 3.6 Consensus size: 47
9188500 TTTGGGCATA
*
9188510 CGAACTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGAATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGAATC
* ** * * *
9188557 CGAACTTGTTGAGTTGAGTTTGAGTTCACT--TATG-GA-T-GCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTAACTAG-GAA--TC
* *
9188603 CGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGAATC
9188650 CGAACTCGTTGAGTTGAGTCCGAGTTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC
9188677 ACTTGTGGAT
Statistics
Matches: 97, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 28 0.29
47 56 0.58
48 2 0.02
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.31
Consensus pattern (47 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGAATC
Found at i:9188619 original size:93 final size:93
Alignment explanation
Indices: 9188514--9188722 Score: 355
Period size: 93 Copynumber: 2.2 Consensus size: 93
9188504 GGCATACGAA
* * **
9188514 CTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGAATCCGAACTTGTTGAGTTGAGTTTG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGAATCCGAACTCGTTGAGTTGAGTCCG
*
9188579 AGTTCACTTATGGATGCGAATGTCCGAG
66 AGTTCACTTATGGATGCGAATGCCCGAG
*
9188607 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGAATCCGAACTCGTTGAGTTGAGTCCG
*
9188672 AGTTCACTTGTGGATGCGAATGCCCGAG
66 AGTTCACTTATGGATGCGAATGCCCGAG
9188700 CTCGTTGAGTTGAGTCCGAGTTC
1 CTCGTTGAGTTGAGTCCGAGTTC
9188723 ACTTATGGGC
Statistics
Matches: 109, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 109 1.00
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.31
Consensus pattern (93 bp):
CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGAATCCGAACTCGTTGAGTTGAGTCCG
AGTTCACTTATGGATGCGAATGCCCGAG
Found at i:9188628 original size:46 final size:46
Alignment explanation
Indices: 9188555--9188730 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
9188545 TAACTAGGAA
* **
9188555 TCCGAACTTGTTGAGTTGAGTTTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
9188601 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
9188646 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
9188694 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
9188731 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.56
47 28 0.26
48 2 0.02
50 5 0.05
51 2 0.02
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:9197976 original size:66 final size:66
Alignment explanation
Indices: 9197870--9198002 Score: 230
Period size: 66 Copynumber: 2.0 Consensus size: 66
9197860 ACAAAAATGG
* *
9197870 ACATGGCAGGTGAAATCTCAAAGTTATGCATTAAGGGTATTTTAGTAATTTGGCTAATAAGGACA
1 ACATGGCAGGTGAAATCTCAAACTTATGCATTAAGGGTATTTTAGTAATTTGGATAATAAGGACA
9197935 A
66 A
* *
9197936 ACATGGTAGGTGAAATCTCAAACTTATGCATTAAGGGTATTTTAGTAATTTGGATATTAAGGACA
1 ACATGGCAGGTGAAATCTCAAACTTATGCATTAAGGGTATTTTAGTAATTTGGATAATAAGGACA
9198001 A
66 A
9198002 A
1 A
9198003 ATTAACTAAA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.37, C:0.10, G:0.22, T:0.32
Consensus pattern (66 bp):
ACATGGCAGGTGAAATCTCAAACTTATGCATTAAGGGTATTTTAGTAATTTGGATAATAAGGACA
A
Found at i:9208898 original size:47 final size:47
Alignment explanation
Indices: 9208847--9209262 Score: 760
Period size: 47 Copynumber: 8.8 Consensus size: 47
9208837 GATAATTGTG
9208847 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
9208894 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
9208943 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
9208992 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
9209039 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
9209086 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
9209133 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
9209180 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
9209227 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
9209263 AATTGTGTCA
Statistics
Matches: 364, Mismatches: 3, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
47 268 0.74
49 96 0.26
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:9211330 original size:37 final size:37
Alignment explanation
Indices: 9211277--9211413 Score: 238
Period size: 37 Copynumber: 3.7 Consensus size: 37
9211267 CGAATAGTCC
* * *
9211277 CCACACGTAGTTATCGGGTCTTACCCGGACAAAACCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
9211314 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
9211351 CCACACGTAGTCATCGGGTCTTACTCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
9211388 CCACACGTAGTCATCGGGTCTTACCC
1 CCACACGTAGTCATCGGGTCTTACCC
9211414 AGAATATATT
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 95 1.00
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Done.