Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 32 of 235
Found at i:10185256 original size:82 final size:81
Alignment explanation
Indices: 10185085--10185265 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
10185075 GATTAAATTG
* *
10185085 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
10185150 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
10185166 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
10185230 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
10185248 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
10185266 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:10186718 original size:50 final size:48
Alignment explanation
Indices: 10186651--10186771 Score: 160
Period size: 50 Copynumber: 2.5 Consensus size: 48
10186641 GAGGCTGACT
*
10186651 CCATGTCCCAGACATGGTCTTACACTAGCTCTCGCAT-ATTTGTGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCT--CATAATGTG-GCCGATG
* *
10186701 CCATGTCCCAGATATGGTCTTACACTGGCTCTCATAATGTGGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGATG
10186749 -CATGTCCCAGACAT-G-CTTACACT
1 CCATGTCCCAGACATGGTCTTACACT
10186772 TGCACACAAA
Statistics
Matches: 66, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
45 8 0.12
46 1 0.02
47 13 0.20
48 10 0.15
49 4 0.06
50 30 0.45
ACGTcount: A:0.21, C:0.30, G:0.20, T:0.29
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGATG
Found at i:10203274 original size:48 final size:48
Alignment explanation
Indices: 10203221--10203354 Score: 250
Period size: 48 Copynumber: 2.8 Consensus size: 48
10203211 AATACAAAAC
10203221 ATTAAATAAAGATGCATTTAACAAACAAAACACATAATGAAGCAGATT
1 ATTAAATAAAGATGCATTTAACAAACAAAACACATAATGAAGCAGATT
10203269 ATTAAATAAAGATGCATTTAACAAACAAAACACATAATGAAGCAGATT
1 ATTAAATAAAGATGCATTTAACAAACAAAACACATAATGAAGCAGATT
* *
10203317 ATTAAATAAAGATGCATTTAACAAACAAAGCACGTAAT
1 ATTAAATAAAGATGCATTTAACAAACAAAACACATAAT
10203355 TAAAAATTGA
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 84 1.00
ACGTcount: A:0.54, C:0.13, G:0.10, T:0.23
Consensus pattern (48 bp):
ATTAAATAAAGATGCATTTAACAAACAAAACACATAATGAAGCAGATT
Found at i:10206983 original size:30 final size:30
Alignment explanation
Indices: 10206944--10207108 Score: 147
Period size: 30 Copynumber: 5.5 Consensus size: 30
10206934 ATCATCGATC
*
10206944 TATGAAAAGGGATGGCTTCGGTTATCAAAT
1 TATGAAAAGGGATGGCTTCGGCTATCAAAT
* * * * * *
10206974 TATGGAAAGGGAT-GCTGACGACCATTGAAAA
1 TATGAAAAGGGATGGCT-TCGGCTA-TCAAAT
* *
10207005 T-TGGAAAGGGATGGCTTCGGCCATCAAAT
1 TATGAAAAGGGATGGCTTCGGCTATCAAAT
** *
10207034 TATGAAAAGGGATGGCTTCGAATATC-TAT
1 TATGAAAAGGGATGGCTTCGGCTATCAAAT
* *
10207063 CTATGAAAAAGGATGGCTTTGGCTATCAAAT
1 -TATGAAAAGGGATGGCTTCGGCTATCAAAT
*
10207094 TATGAAAAAGGATGG
1 TATGAAAAGGGATGG
10207109 TGACGACCAT
Statistics
Matches: 108, Mismatches: 21, Indels: 12
0.77 0.15 0.09
Matches are distributed among these distances:
29 10 0.09
30 88 0.81
31 10 0.09
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.26
Consensus pattern (30 bp):
TATGAAAAGGGATGGCTTCGGCTATCAAAT
Found at i:10207022 original size:60 final size:60
Alignment explanation
Indices: 10206946--10207134 Score: 204
Period size: 60 Copynumber: 3.1 Consensus size: 60
10206936 CATCGATCTA
* *
10206946 TGAAAAGGGATGGCTTCGGTTATCAAATTATGGAAAGGGATGCTGACGACCATTGAAAAT
1 TGAAAAGGGATGGCTTCGGCTATCAAATTATGAAAAGGGATGCTGACGACCATTGAAAAT
* * * ** **
10207006 TGGAAAGGGATGGCTTCGGCCATCAAATTATGAAAAGGGATGGCT-TCGA--ATATCTATCT
1 TGAAAAGGGATGGCTTCGGCTATCAAATTATGAAAAGGGAT-GCTGACGACCAT-TGAAAAT
* * * *
10207065 ATGAAAAAGGATGGCTTTGGCTATCAAATTATGAAAAAGGATGGTGACGACCATTGAAAAAT
1 -TGAAAAGGGATGGCTTCGGCTATCAAATTATGAAAAGGGATGCTGACGACCATTG-AAAAT
10207127 TGAAAAGG
1 TGAAAAGG
10207135 ATGATGACGA
Statistics
Matches: 101, Mismatches: 21, Indels: 13
0.75 0.16 0.10
Matches are distributed among these distances:
58 2 0.02
59 5 0.05
60 79 0.78
61 11 0.11
62 4 0.04
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.25
Consensus pattern (60 bp):
TGAAAAGGGATGGCTTCGGCTATCAAATTATGAAAAGGGATGCTGACGACCATTGAAAAT
Found at i:10207155 original size:120 final size:120
Alignment explanation
Indices: 10206941--10207161 Score: 295
Period size: 120 Copynumber: 1.8 Consensus size: 120
10206931 GCAATCATCG
* * * *
10206941 ATCTATGAAAAGGGATGGCTTCGGTTATCAAATTATGGAAAGGGATGCTGACGACCATTGAAAAT
1 ATCTATGAAAAAGGATGGCTTCGGCTATCAAATTATGAAAAAGGATGCTGACGACCATTGAAAAT
* * * * *
10207006 TGGAAAGGGATGGCTTCGGCCATCAAATTATGAAAAGGGATGGCTTCGAATATCT
66 TGGAAAAGGATGGATACGACCATCAAATTATAAAAAGGGATGGCTTCGAATATCT
* *
10207061 ATCTATGAAAAAGGATGGCTTTGGCTATCAAATTATGAAAAAGGATGGTGACGACCATTGAAAAA
1 ATCTATGAAAAAGGATGGCTTCGGCTATCAAATTATGAAAAAGGATGCTGACGACCATTG-AAAA
10207126 TT-GAAAAGGAT-GATGACGACCAT-ATAATTATAAAAA
65 TTGGAAAAGGATGGAT-ACGACCATCA-AATTATAAAAA
10207162 AAAGATAGCT
Statistics
Matches: 87, Mismatches: 11, Indels: 6
0.84 0.11 0.06
Matches are distributed among these distances:
119 3 0.03
120 78 0.90
121 6 0.07
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.25
Consensus pattern (120 bp):
ATCTATGAAAAAGGATGGCTTCGGCTATCAAATTATGAAAAAGGATGCTGACGACCATTGAAAAT
TGGAAAAGGATGGATACGACCATCAAATTATAAAAAGGGATGGCTTCGAATATCT
Found at i:10207193 original size:120 final size:119
Alignment explanation
Indices: 10206945--10207194 Score: 263
Period size: 120 Copynumber: 2.1 Consensus size: 119
10206935 TCATCGATCT
* * *
10206945 ATGAAAAGGGATGGCTTCGGTTATCAAATTATGGAAAGGGATGCTGACGACCATTGAAAATTGGA
1 ATGAAAA-GGATGGCTTCGGCTATCAAATTATGAAAAAGGATGCTGACGACCATTGAAAATTGGA
* * * * * ** * * * *
10207010 AAGGGATGGCTTCGGCCATCAAATTATGAAAAGGGATGGCTTCGAATATCTATCT
65 AAAGGATGGATACGACCATCAAATTATAAAAAAAGATAGCTTCGAATATCAAACC
* *
10207065 ATGAAAAAGGATGGCTTTGGCTATCAAATTATGAAAAAGGATGGTGACGACCATTGAAAAATT-G
1 ATG-AAAAGGATGGCTTCGGCTATCAAATTATGAAAAAGGATGCTGACGACCATTG-AAAATTGG
**
10207129 AAAAGGAT-GATGACGACCAT-ATAATTATAAAAAAAAGATAGCTTCGGCTATCAAACC
64 AAAAGGATGGAT-ACGACCATCA-AATTAT-AAAAAAAGATAGCTTCGAATATCAAACC
10207186 ATGAAAAGG
1 ATGAAAAGG
10207195 GATAACTTCA
Statistics
Matches: 107, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
119 3 0.03
120 72 0.67
121 32 0.30
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.24
Consensus pattern (119 bp):
ATGAAAAGGATGGCTTCGGCTATCAAATTATGAAAAAGGATGCTGACGACCATTGAAAATTGGAA
AAGGATGGATACGACCATCAAATTATAAAAAAAGATAGCTTCGAATATCAAACC
Found at i:10211241 original size:15 final size:15
Alignment explanation
Indices: 10211221--10211258 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
10211211 CACAATCGCA
10211221 ACAAGTAATAAAGTG
1 ACAAGTAATAAAGTG
10211236 ACAAGTAATAAAGTG
1 ACAAGTAATAAAGTG
10211251 ACAAGTAA
1 ACAAGTAA
10211259 ATGTCGAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.55, C:0.08, G:0.18, T:0.18
Consensus pattern (15 bp):
ACAAGTAATAAAGTG
Found at i:10211400 original size:15 final size:15
Alignment explanation
Indices: 10211380--10211416 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
10211370 GATTTTAACT
10211380 AAGTAAAAAAGTGAC
1 AAGTAAAAAAGTGAC
*
10211395 AAGTAATAAAGTGAC
1 AAGTAAAAAAGTGAC
10211410 AAGTAAA
1 AAGTAAA
10211417 TGTCGAGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.59, C:0.05, G:0.19, T:0.16
Consensus pattern (15 bp):
AAGTAAAAAAGTGAC
Found at i:10211509 original size:157 final size:157
Alignment explanation
Indices: 10211223--10211544 Score: 635
Period size: 157 Copynumber: 2.1 Consensus size: 157
10211213 CAATCGCAAC
*
10211223 AAGTAATAAAGTGACAAGTAATAAAGTGACAAGTAAATGTCGAGTTATCGTACCCATAGAGACTG
1 AAGTAAAAAAGTGACAAGTAATAAAGTGACAAGTAAATGTCGAGTTATCGTACCCATAGAGACTG
10211288 TGAAAAGAATTATTTATGAATGCAATTAAAAACACTTTGGTGAAGAAAAATATTTTTATTTGAAG
66 TGAAAAGAATTATTTATGAATGCAATTAAAAACACTTTGGTGAAGAAAAATATTTTTATTTGAAG
10211353 AGGTGATTAAAAACTAAGATTTTAACT
131 AGGTGATTAAAAACTAAGATTTTAACT
10211380 AAGTAAAAAAGTGACAAGTAATAAAGTGACAAGTAAATGTCGAGTTATCGTACCCATAGAGACTG
1 AAGTAAAAAAGTGACAAGTAATAAAGTGACAAGTAAATGTCGAGTTATCGTACCCATAGAGACTG
10211445 TGAAAAGAATTATTTATGAATGCAATTAAAAACACTTTGGTGAAGAAAAATATTTTTATTTGAAG
66 TGAAAAGAATTATTTATGAATGCAATTAAAAACACTTTGGTGAAGAAAAATATTTTTATTTGAAG
10211510 AGGTGATTAAAAACTAAGATTTTAACT
131 AGGTGATTAAAAACTAAGATTTTAACT
10211537 AAGTAAAA
1 AAGTAAAA
10211545 TAAATAAAAA
Statistics
Matches: 164, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
157 164 1.00
ACGTcount: A:0.45, C:0.08, G:0.18, T:0.29
Consensus pattern (157 bp):
AAGTAAAAAAGTGACAAGTAATAAAGTGACAAGTAAATGTCGAGTTATCGTACCCATAGAGACTG
TGAAAAGAATTATTTATGAATGCAATTAAAAACACTTTGGTGAAGAAAAATATTTTTATTTGAAG
AGGTGATTAAAAACTAAGATTTTAACT
Found at i:10212899 original size:31 final size:31
Alignment explanation
Indices: 10212728--10212898 Score: 270
Period size: 31 Copynumber: 5.5 Consensus size: 31
10212718 TTTAACGGTT
*
10212728 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
* *
10212759 ACTGGGACAAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
10212790 ACTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
*
10212821 ACTGGGGCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
* * * *
10212852 TCTAGGCCGAAGCCTTTTCATAAATCATATT
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
10212883 ACTGGGCCGAAGCCTT
1 ACTGGGCCGAAGCCTT
10212899 TATTGTAAAC
Statistics
Matches: 127, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 127 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTATCATAAATCATATC
Found at i:10213146 original size:25 final size:25
Alignment explanation
Indices: 10213118--10213237 Score: 204
Period size: 25 Copynumber: 4.8 Consensus size: 25
10213108 CTCTTTTAAT
*
10213118 AACTGGGGAAAAGCCCTTTTCGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
10213143 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
10213168 AACTGGGGCAAAGCCCTTTTCGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
10213193 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
10213218 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
10213238 AGCACTTCCT
Statistics
Matches: 90, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 90 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:10214144 original size:27 final size:27
Alignment explanation
Indices: 10214044--10214127 Score: 134
Period size: 27 Copynumber: 3.1 Consensus size: 27
10214034 GGGCATATTC
* *
10214044 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
10214071 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
10214098 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
10214125 GTC
1 GTC
10214128 TTTTTACCTA
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
27 53 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:10214290 original size:27 final size:27
Alignment explanation
Indices: 10214250--10214482 Score: 254
Period size: 27 Copynumber: 8.7 Consensus size: 27
10214240 AGAAAGTCAA
** *
10214250 GGGTATTTCT-GTAATTTTGTAAATCAG
1 GGGTATTT-TGGTAATTTTACAAACCAG
** *
10214277 GGGTATTTTGGTAATTTTACAAATTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
10214304 GGGTATTTCGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
10214331 TGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
10214358 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
10214385 GGGTATTTTAGCAATTTTACAGACCA-
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * *
10214411 GGATATTTTGGTAATTTTACTAATCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* ** *
10214438 GGGTATTTTGATAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
10214465 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
10214483 GTAAATCGAG
Statistics
Matches: 174, Mismatches: 30, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 21 0.12
27 153 0.88
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:10214336 original size:54 final size:54
Alignment explanation
Indices: 10214168--10214482 Score: 276
Period size: 54 Copynumber: 5.8 Consensus size: 54
10214158 CACCCTACAA
* * * * ** *
10214168 GGGTGTTTTGGTAAATCTACAAACCAAGGGTA-TTCAGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAACCAG
* * * * * ** *
10214221 TGGTATTCTT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATCAG
1 GGGTATT-TTGGTAA-TTTTACAAA-CCAAGGGTATTTCGGTAATTTTACAAACCAG
**
10214277 GGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAACCAG
* * * *
10214331 TGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAACCAG
* * * * * * * *
10214385 GGGTATTTTAGCAATTTTACAGACC-AGGATATTTTGGTAATTTTACTAATCAA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAACCAG
* ** **
10214438 GGGTATTTTGATAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTT
10214483 GTAAATCGAG
Statistics
Matches: 216, Mismatches: 40, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
53 50 0.23
54 121 0.56
55 18 0.08
56 27 0.12
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAACCAG
Found at i:10214462 original size:80 final size:80
Alignment explanation
Indices: 10214271--10214482 Score: 282
Period size: 80 Copynumber: 2.6 Consensus size: 80
10214261 TAATTTTGTA
** ** *
10214271 AATCAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTTACAAACCAGTGGTA
1 AATCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGTGATA
10214336 TTTTGGTAATTTTAC
66 TTTTGGTAATTTTAC
* * * *
10214351 AAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGCAATTTTACAGACCAG-GAT
1 AATC-AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGTGAT
10214415 ATTTTGGTAATTTTAC
65 ATTTTGGTAATTTTAC
* * **
10214431 TAATCAAGGGTATTTTGATAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 -AATCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTT
10214483 GTAAATCGAG
Statistics
Matches: 114, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
80 62 0.54
81 52 0.46
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (80 bp):
AATCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGTGATA
TTTTGGTAATTTTAC
Found at i:10214483 original size:27 final size:27
Alignment explanation
Indices: 10214165--10214550 Score: 219
Period size: 27 Copynumber: 14.3 Consensus size: 27
10214155 ATTCACCCTA
* * * * *
10214165 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* *
10214192 CAAGGGTA-TTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * *
10214218 CAATGGTATTCTTA-TAATTTTTAGAAAGT
1 CAAGGGTATT-TTAGTAA-TTTTATAAA-C
* *
10214247 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTATAAAC
* * * *
10214274 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
* ** *
10214301 TAAGGGTATTTCGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* *
10214328 C-AGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTAGTAATTTTATAAAC
* * * *
10214355 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * * *
10214382 CAGGGGTATTTTAGCAATTTTACAGAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * *
10214409 C-AGGATATTTTGGTAATTTTACT-AAT
1 CAAGGGTATTTTAGTAATTTTA-TAAAC
*
10214435 CAAGGGTATTTT-GATAATTTTGTAAAC
1 CAAGGGTATTTTAG-TAATTTTATAAAC
* *
10214462 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
* *** * * *
10214489 CGAGGGTAAAATAGTAATTCTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
*** * *
10214516 CAAGGGTAAAATAGTAATTCTATAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
*
10214543 CGAGGGTA
1 CAAGGGTA
10214551 AAACGGTGAT
Statistics
Matches: 296, Mismatches: 49, Indels: 28
0.79 0.13 0.08
Matches are distributed among these distances:
26 42 0.14
27 222 0.75
28 19 0.06
29 13 0.04
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTATAAAC
Found at i:10214551 original size:27 final size:27
Alignment explanation
Indices: 10214473--10214596 Score: 158
Period size: 27 Copynumber: 4.6 Consensus size: 27
10214463 AAGGGTATTT
*
10214473 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
10214500 TAGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
10214527 TAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** * *
10214554 CGGTGATTCTGTAAATTGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** *
10214581 CGGTAATTATGTAAAT
1 TAGTAATTCTGTAAAT
10214597 TGGGGGTACT
Statistics
Matches: 86, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 86 1.00
ACGTcount: A:0.40, C:0.06, G:0.22, T:0.31
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:10214569 original size:54 final size:54
Alignment explanation
Indices: 10214449--10214580 Score: 156
Period size: 54 Copynumber: 2.4 Consensus size: 54
10214439 GGTATTTTGA
* * *** * * *
10214449 TAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATAG
1 TAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAG
*
10214503 TAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAG
* **
10214557 TGATTCTGTAAATTGAGGGTAAAA
1 TAATTCTGTAAATCAAGGGTAAAA
10214581 CGGTAATTAT
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 66 1.00
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.33
Consensus pattern (54 bp):
TAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAG
Found at i:10218170 original size:40 final size:40
Alignment explanation
Indices: 10218115--10218332 Score: 318
Period size: 40 Copynumber: 5.5 Consensus size: 40
10218105 CGGATGATAA
* *
10218115 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
10218155 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
10218195 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
**
10218235 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
10218275 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
10218315 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
10218333 TACTTGGTTT
Statistics
Matches: 168, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 16 0.10
40 151 0.90
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:10225964 original size:40 final size:40
Alignment explanation
Indices: 10225909--10226858 Score: 1765
Period size: 40 Copynumber: 23.8 Consensus size: 40
10225899 GTCTCAACGA
*
10225909 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
1 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
10225949 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
1 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
10225989 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
1 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
10226029 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
1 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
10226069 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
1 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
10226109 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
1 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
10226149 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
1 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
10226189 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
1 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
10226229 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
1 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
10226269 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
1 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
10226309 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
1 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
10226349 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
1 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
10226389 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
1 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
10226429 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
1 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
10226469 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
1 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
10226509 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
1 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
10226549 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
1 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
10226589 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
1 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
10226629 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
1 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
10226669 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
1 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
*
10226709 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
* * * *
10226749 TGATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAG
1 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
* * * *
10226789 TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGG
1 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
* * ** *
10226829 TGTTATATTCGGGCTAGGTCCCGAAGAGCA
1 TGATGTACCCGGGCTAAGTCCCGAAGAGCA
10226859 ATCATGCTGG
Statistics
Matches: 896, Mismatches: 14, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 896 1.00
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAG
Found at i:10229243 original size:40 final size:40
Alignment explanation
Indices: 10229095--10229236 Score: 155
Period size: 40 Copynumber: 3.5 Consensus size: 40
10229085 ATGATGTCTA
* * * *
10229095 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCG
* * *
10229135 GACTAAGAT-CCGAAGACATTTGTGCGAGTTACTAAATTCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
*
10229175 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCG
*
10229215 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
10229237 AACGAGTAGC
Statistics
Matches: 85, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
39 1 0.01
40 74 0.87
41 10 0.12
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
Found at i:10229536 original size:49 final size:47
Alignment explanation
Indices: 10229461--10229849 Score: 598
Period size: 49 Copynumber: 8.1 Consensus size: 47
10229451 AAAGGTTGGT
10229461 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
10229508 AATGCGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATATGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
10229557 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
10229604 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATATGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
10229653 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
10229700 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATATGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
10229749 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
10229796 AATGTGAAAGTGTATATATATGTGATAAGGCCCAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
10229845 AATGT
1 AATGT
10229850 AACACCCCGA
Statistics
Matches: 312, Mismatches: 22, Indels: 14
0.90 0.06 0.04
Matches are distributed among these distances:
47 143 0.46
49 169 0.54
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:10229625 original size:96 final size:96
Alignment explanation
Indices: 10229461--10229849 Score: 751
Period size: 96 Copynumber: 4.1 Consensus size: 96
10229451 AAAGGTTGGT
*
10229461 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGCGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
10229526 TATGTGATAAGGCCTAATGGCCGATATGATG
66 TATGTGATAAGGCCTAATGGCCGATATGATG
10229557 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
10229622 TATGTGATAAGGCCTAATGGCCGATATGATG
66 TATGTGATAAGGCCTAATGGCCGATATGATG
10229653 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
10229718 TATGTGATAAGGCCTAATGGCCGATATGATG
66 TATGTGATAAGGCCTAATGGCCGATATGATG
10229749 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
10229814 TATGTGATAAGGCCCAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATATGATG
10229845 AATGT
1 AATGT
10229850 AACACCCCGA
Statistics
Matches: 290, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 290 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATATGATG
Found at i:10237011 original size:28 final size:28
Alignment explanation
Indices: 10236948--10237129 Score: 267
Period size: 28 Copynumber: 6.5 Consensus size: 28
10236938 ATATTAAGTC
*
10236948 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
10236975 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
10237003 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
10237031 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
10237059 CGCACACTTAGTACTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * * *
10237087 CGGACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
10237116 CGCACACTTAGTGC
1 CGCACACTTAGTGC
10237130 CAATCTCATG
Statistics
Matches: 140, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
27 21 0.15
28 101 0.72
29 18 0.13
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:10238863 original size:47 final size:47
Alignment explanation
Indices: 10238778--10239093 Score: 470
Period size: 47 Copynumber: 6.6 Consensus size: 47
10238768 GGTTGTCACA
*
10238778 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGACGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
*
10238827 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
10238874 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
10238921 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
* *
10238970 ATTAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * * * * *
10239017 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAATGGCCAACGTT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
10239064 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
10239094 TCCCGAAGGG
Statistics
Matches: 244, Mismatches: 21, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
47 185 0.76
49 59 0.24
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:10238893 original size:96 final size:94
Alignment explanation
Indices: 10238778--10239093 Score: 470
Period size: 96 Copynumber: 3.3 Consensus size: 94
10238768 GGTTGTCACA
*
10238778 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGACGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
10238843 ATATATGTGATAAGGCCTAATAGCCGATGTG
64 ATATATGTGATAAGGCCTAATGGCCGATGTG
* *
10238874 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
10238939 ATATATGTGATAAGGCCTAATGGCCGATGTG
64 ATATATGTGATAAGGCCTAATGGCCGATGTG
* *
10238970 ATTAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * * * *
10239035 ATATGTGACAGGGCCGAATGGCCAACGTT
66 ATATGTGATAAGGCCTAATGGCCGATGTG
* *
10239064 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
10239094 TCCCGAAGGG
Statistics
Matches: 200, Mismatches: 18, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
94 96 0.48
96 104 0.52
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:10239036 original size:143 final size:143
Alignment explanation
Indices: 10238778--10239093 Score: 537
Period size: 143 Copynumber: 2.2 Consensus size: 143
10238768 GGTTGTCACA
10238778 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGACGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGACGATGTGATGAATGTGAAAGTGT
*
10238843 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
66 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCG
*
10238908 AATGGCCAATGTG
131 AATGGCCAACGTG
* *
10238921 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATTAATGTGAAAGTGT
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGACGATGTGATGAATGTGAAAGTGT
* * *
10238986 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCG
66 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCG
*
10239051 AATGGCCAACGTT
131 AATGGCCAACGTG
*
10239064 ATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGAATGTGAAAGTGTATATATATGTGATAAG
10239094 TCCCGAAGGG
Statistics
Matches: 164, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
141 10 0.06
142 1 0.01
143 153 0.93
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (143 bp):
ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGACGATGTGATGAATGTGAAAGTGT
ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCG
AATGGCCAACGTG
Found at i:10243258 original size:46 final size:46
Alignment explanation
Indices: 10243186--10243273 Score: 140
Period size: 46 Copynumber: 1.9 Consensus size: 46
10243176 CATTGGGTGG
* *
10243186 TATGCGAGCCAGTGTAACACATGTCTGGCACATGCATGGGCCATGT
1 TATGAGAGCCAGTGTAACACATGTCTGGCACATGCATCGGCCATGT
* *
10243232 TATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC
1 TATGAGAGCCAGTGTAACACATGTCTGGCACATGCATCGGCC
10243274 TCAGGATATA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (46 bp):
TATGAGAGCCAGTGTAACACATGTCTGGCACATGCATCGGCCATGT
Found at i:10261360 original size:49 final size:47
Alignment explanation
Indices: 10261239--10261368 Score: 145
Period size: 49 Copynumber: 2.7 Consensus size: 47
10261229 CAAGATATAC
*
10261239 AAGCTAGTGTAAGACCTGTCTGGGACATGGCATCAACACAATAAGTG
1 AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAACACAATAAGTG
* * * * *
10261286 AGAGCCAGTGAAAGACTTGTCTGGGACATGGCATCAACCTCGATGTA-TGG
1 A-AGCCAGTGTAAGACCTGTCTGGGACATGGCATCAA-CACAAT-AAGT-G
* *
10261336 AAGCCAGTGTAAGACCTGCCTGGGACATCGCAT
1 AAGCCAGTGTAAGACCTGTCTGGGACATGGCAT
10261369 TGACTTGCAT
Statistics
Matches: 69, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
47 1 0.01
48 32 0.46
49 33 0.48
50 3 0.04
ACGTcount: A:0.30, C:0.22, G:0.28, T:0.21
Consensus pattern (47 bp):
AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAACACAATAAGTG
Found at i:10262562 original size:28 final size:29
Alignment explanation
Indices: 10262522--10262576 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
10262512 CACGAGCTAA
10262522 GACACAGGCGTGT-C-ATGGCCGTGTGAGG
1 GACACAGGCGTGTGCTA-GGCCGTGTGAGG
*
10262550 GACACGGGCGTGTGCTAGGCCGTGTGA
1 GACACAGGCGTGTGCTAGGCCGTGTGA
10262577 AAACCCCTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 12 0.50
29 11 0.46
30 1 0.04
ACGTcount: A:0.16, C:0.22, G:0.44, T:0.18
Consensus pattern (29 bp):
GACACAGGCGTGTGCTAGGCCGTGTGAGG
Found at i:10267062 original size:27 final size:27
Alignment explanation
Indices: 10267022--10267103 Score: 137
Period size: 27 Copynumber: 3.0 Consensus size: 27
10267012 CTTTAACATA
*
10267022 CCCTTTTGGAACTACCATCAAATCATT
1 CCCTTTTGGGACTACCATCAAATCATT
*
10267049 CCCTTTCGGGACTACCATCAAATCATT
1 CCCTTTTGGGACTACCATCAAATCATT
*
10267076 CCATTTTGGGACTACCATCAAATCATT
1 CCCTTTTGGGACTACCATCAAATCATT
10267103 C
1 C
10267104 TTTGAACTAC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (27 bp):
CCCTTTTGGGACTACCATCAAATCATT
Found at i:10270243 original size:93 final size:93
Alignment explanation
Indices: 10270084--10270255 Score: 238
Period size: 93 Copynumber: 1.8 Consensus size: 93
10270074 CGCCCCTAAG
* * *
10270084 TGAACTCGGACTCAACTCAACGAGCTCAGCCGTTCGCATAAATAAATGAGCTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATAAATAAATGAACTCGGACTCAACTCA
**
10270149 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAACTCGGATGCCTAGTTACATCTCA
* * ** *
10270177 TGAACTCGGACTCAACTCAACGAGTTC-GAACATTTGCATCCATAAGTGAACTCGGACTCAACTC
1 TGAACTCGGACTCAACTCAACGAGCTCAG-ACATTCGCATAAATAAATGAACTCGGACTCAACTC
10270241 AACGAACTCGGATGC
65 AACGAACTCGGATGC
10270256 TCAACCATCC
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
92 1 0.01
93 67 0.99
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATAAATAAATGAACTCGGACTCAACTCA
ACGAACTCGGATGCCTAGTTACATCTCA
Found at i:10270244 original size:46 final size:46
Alignment explanation
Indices: 10270080--10270245 Score: 169
Period size: 46 Copynumber: 3.6 Consensus size: 46
10270070 AACCCGCCCC
* * * *
10270080 TAAGTGAACTCGGACTCAACTCAACGAGCTC-AGCCGTTCGCATAAA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAGCCATTTGCAT-CA
* * * *
10270126 TAAATGAGCTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATC-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GA-GCC-ATTTGCATCA
* *
10270174 TCA-TGAACTCGGACTCAACTCAACGAGTTCGA-ACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAGCCATTTGCAT-CA
10270219 TAAGTGAACTCGGACTCAACTCAACGA
1 TAAGTGAACTCGGACTCAACTCAACGA
10270246 ACTCGGATGC
Statistics
Matches: 99, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 53 0.54
47 26 0.26
48 3 0.03
49 3 0.03
50 4 0.04
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGAGCCATTTGCATCA
Found at i:10276914 original size:43 final size:43
Alignment explanation
Indices: 10276853--10276939 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
10276843 AAATTACATG
* *
10276853 TGTCACGTACATCATGAACTCAGACCAACTCAATGAGCTCAGA
1 TGTCACATACATCATGAACTCAAACCAACTCAATGAGCTCAGA
* *
10276896 TGTCACATATATCATGAACTCAAACCAACTCAATGAGTTCAGA
1 TGTCACATACATCATGAACTCAAACCAACTCAATGAGCTCAGA
10276939 T
1 T
10276940 TATATAATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.37, C:0.25, G:0.14, T:0.24
Consensus pattern (43 bp):
TGTCACATACATCATGAACTCAAACCAACTCAATGAGCTCAGA
Found at i:10285567 original size:15 final size:14
Alignment explanation
Indices: 10285517--10285568 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 14
10285507 TAAATCGATT
10285517 TTAAATTAATATAA
1 TTAAATTAATATAA
*
10285531 -TAAGATT-TTATAA
1 TTAA-ATTAATATAA
10285544 GTTAAATTAATATAA
1 -TTAAATTAATATAA
10285559 TTAATATTAA
1 TTAA-ATTAA
10285569 AATTTTAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
13 8 0.26
14 10 0.32
15 13 0.42
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (14 bp):
TTAAATTAATATAA
Found at i:10285576 original size:28 final size:29
Alignment explanation
Indices: 10285514--10285580 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 29
10285504 ACTTAAATCG
* *
10285514 ATTTTAAATTAATATAATAAGATTTTATA
1 ATTTTAAATTAATATAATAAGATATTAAA
* *
10285543 A-GTTAAATTAATATAATTA-ATATTAAA
1 ATTTTAAATTAATATAATAAGATATTAAA
10285570 ATTTTAAATTA
1 ATTTTAAATTA
10285581 TTCACCCTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
27 7 0.22
28 24 0.75
29 1 0.03
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (29 bp):
ATTTTAAATTAATATAATAAGATATTAAA
Found at i:10290390 original size:27 final size:27
Alignment explanation
Indices: 10290360--10290537 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
10290350 ATATTGAGTC
* * * *
10290360 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
10290387 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
10290414 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
10290442 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
10290469 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
10290496 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
10290523 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
10290538 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:10290499 original size:82 final size:81
Alignment explanation
Indices: 10290381--10290536 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
10290371 TGCTATATAA
* *
10290381 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
10290446 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
10290463 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
10290527 CACTTAGTGC
65 CACTTAGTGC
10290537 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:10291036 original size:12 final size:12
Alignment explanation
Indices: 10291019--10291045 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
10291009 ATGGCATACT
10291019 TATGTATATATA
1 TATGTATATATA
10291031 TATGTATATATA
1 TATGTATATATA
10291043 TAT
1 TAT
10291046 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:10308920 original size:10 final size:10
Alignment explanation
Indices: 10308901--10308936 Score: 63
Period size: 10 Copynumber: 3.6 Consensus size: 10
10308891 ATATTGGCGG
10308901 TGGACAATGA
1 TGGACAATGA
*
10308911 TGGGCAATGA
1 TGGACAATGA
10308921 TGGACAATGA
1 TGGACAATGA
10308931 TGGACA
1 TGGACA
10308937 TGGGTTGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.36, C:0.11, G:0.33, T:0.19
Consensus pattern (10 bp):
TGGACAATGA
Found at i:10347043 original size:25 final size:24
Alignment explanation
Indices: 10347009--10347090 Score: 87
Period size: 24 Copynumber: 3.4 Consensus size: 24
10346999 TTTGAAAGTC
10347009 CGCACACATAGTGCTCTTAC-TTAT-T
1 CGCACACATAGTGC-C--ACATTATCT
*
10347034 CGCACACATAGTGCCACATTTTCT
1 CGCACACATAGTGCCACATTATCT
** *
10347058 CGCACACATAGTGCCATGTAATCT
1 CGCACACATAGTGCCACATTATCT
10347082 CGCACACAT
1 CGCACACAT
10347091 TGCGCCGCAT
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
22 2 0.04
23 3 0.06
24 31 0.62
25 14 0.28
ACGTcount: A:0.27, C:0.32, G:0.13, T:0.28
Consensus pattern (24 bp):
CGCACACATAGTGCCACATTATCT
Found at i:10347082 original size:24 final size:24
Alignment explanation
Indices: 10347033--10347119 Score: 84
Period size: 24 Copynumber: 3.6 Consensus size: 24
10347023 TCTTACTTAT
**
10347033 TCGCACACATAGTGCCACATTTTC
1 TCGCACACATAGTGCCACATAATC
**
10347057 TCGCACACATAGTGCCATGTAATC
1 TCGCACACATAGTGCCACATAATC
* * * **
10347081 TCGCACACATTGCGCCGCATAGCC
1 TCGCACACATAGTGCCACATAATC
*
10347105 TTGCACACATAGTGC
1 TCGCACACATAGTGC
10347120 TGTATTTTCT
Statistics
Matches: 49, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.24
Consensus pattern (24 bp):
TCGCACACATAGTGCCACATAATC
Found at i:10354937 original size:26 final size:24
Alignment explanation
Indices: 10354881--10354944 Score: 92
Period size: 24 Copynumber: 2.7 Consensus size: 24
10354871 TCTTACTTAT
**
10354881 TCGCACACATAGTGCCAGGTTTTC
1 TCGCACACATAGTGCCAGGTAATC
*
10354905 TCGCACACATAGTGCCATGTAATC
1 TCGCACACATAGTGCCAGGTAATC
*
10354929 TCGCACACATTGTGCC
1 TCGCACACATAGTGCC
10354945 GCATAGCCTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (24 bp):
TCGCACACATAGTGCCAGGTAATC
Found at i:10367618 original size:46 final size:46
Alignment explanation
Indices: 10367565--10367740 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
10367555 TACTTGGGCA
10367565 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
10367611 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* * * * *
10367658 TCCGAGCTCGTTGAGTTGAGTCCAAGTTTACTTATGGATACGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
10367704 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
10367741 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 65 0.61
47 30 0.28
48 2 0.02
50 3 0.03
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:10367720 original size:93 final size:93
Alignment explanation
Indices: 10367561--10367733 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
10367551 GGGATACTTG
* * * *
10367561 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
10367626 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
10367654 GGCATCCGAGCTCGTTGAGTTGAGTCCAAGTTTACTTATGGATACGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
10367719 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
10367734 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:10373622 original size:46 final size:46
Alignment explanation
Indices: 10373559--10373678 Score: 141
Period size: 46 Copynumber: 2.6 Consensus size: 46
10373549 TGGTTGAGCA
* * * *
10373559 TCCGAACTCATTAAGTTGAGTCCGAGTTCAGCTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCTGAGTTCAGCTATGGATACGAACG
* * **
10373605 TCCGAACTCGTTGAGTTGAGTTTGAGTTCATTTATGGATACGAACG
1 TCCGAACTCATTGAGTTGAGTCTGAGTTCAGCTATGGATACGAACG
* * *
10373651 CCCGAGCTCATTGAGTTGATTCTGAGTT
1 TCCGAACTCATTGAGTTGAGTCTGAGTT
10373679 TACTTAGGGG
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 61 1.00
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCTGAGTTCAGCTATGGATACGAACG
Found at i:10392452 original size:27 final size:27
Alignment explanation
Indices: 10392422--10392562 Score: 173
Period size: 27 Copynumber: 5.2 Consensus size: 27
10392412 GTGATGAAGT
*
10392422 CACCAGATACAGATATTTTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
10392449 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
* *
10392476 CACCAGAT-CAGATAATTGTGGCATAAC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
*
10392503 CACCA-AGACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
10392530 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
10392557 CACCAG
1 CACCAG
10392563 GATGCTTCCT
Statistics
Matches: 99, Mismatches: 8, Indels: 14
0.82 0.07 0.12
Matches are distributed among these distances:
26 11 0.11
27 83 0.84
28 5 0.05
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:10392498 original size:54 final size:55
Alignment explanation
Indices: 10392422--10392562 Score: 225
Period size: 54 Copynumber: 2.6 Consensus size: 55
10392412 GTGATGAAGT
* *
10392422 CACCAGATACAGAT-ATTTTGGCAGAGCCACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAGACAGATATATGTGGCAGAGC
*
10392476 CACCAGATCAGATAATTGTGGCATAACCACCA-AGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAGACAGATATATGTGGCAGAGC
10392530 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
10392563 GATGCTTCCT
Statistics
Matches: 80, Mismatches: 4, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
53 6 0.08
54 74 0.93
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (55 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAGACAGATATATGTGGCAGAGC
Found at i:10394176 original size:26 final size:26
Alignment explanation
Indices: 10394146--10394196 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
10394136 AATTCCCATC
*
10394146 ATGGAACATTTACCTAACCCATTATA
1 ATGGAACATTTACATAACCCATTATA
*
10394172 ATGGAACATTTACATAACCTATTAT
1 ATGGAACATTTACATAACCCATTAT
10394197 CAATTTGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (26 bp):
ATGGAACATTTACATAACCCATTATA
Found at i:10399518 original size:27 final size:27
Alignment explanation
Indices: 10399470--10399628 Score: 166
Period size: 27 Copynumber: 5.9 Consensus size: 27
10399460 GCGAGGCTGC
* *
10399470 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
10399497 CAGATATTGTGGTAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
10399523 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
10399550 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
10399577 CAGATATATGTGGTAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
10399604 CAGATAATTGTAGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
10399629 GGTGCTTCCT
Statistics
Matches: 112, Mismatches: 12, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
26 10 0.09
27 97 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:10399629 original size:54 final size:54
Alignment explanation
Indices: 10399488--10399629 Score: 223
Period size: 54 Copynumber: 2.6 Consensus size: 54
10399478 GTGACGAAGT
* * *
10399488 CACCAGATACAGAT-ATTGTGGTAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
10399542 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGTAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
10399596 CACCAGATCAGATAATTGTAGCATAGCCACCAGG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGG
10399630 GTGCTTCCTC
Statistics
Matches: 82, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 5 0.06
54 77 0.94
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:10401253 original size:26 final size:26
Alignment explanation
Indices: 10401223--10401330 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
10401213 TGAAATTCCC
10401223 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
10401249 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
10401275 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
10401301 ATAATGGAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAACCCATT
10401327 ATCA
1 ATCA
10401331 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:10402967 original size:28 final size:29
Alignment explanation
Indices: 10402936--10403000 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 29
10402926 TATTTTTATG
10402936 TTTTTATTTCTATCTTT-TTTTAATCTAC
1 TTTTTATTTCTATCTTTCTTTTAATCTAC
* * *
10402964 TTTTTATTT-TATTTTTCTTTTATTTTAC
1 TTTTTATTTCTATCTTTCTTTTAATCTAC
10402992 -TTTTATTTC
1 TTTTTATTTC
10403001 ATCCTTAGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 14 0.44
28 18 0.56
ACGTcount: A:0.15, C:0.11, G:0.00, T:0.74
Consensus pattern (29 bp):
TTTTTATTTCTATCTTTCTTTTAATCTAC
Found at i:10402978 original size:11 final size:11
Alignment explanation
Indices: 10402916--10402999 Score: 50
Period size: 11 Copynumber: 7.7 Consensus size: 11
10402906 GTTTAAAGAC
10402916 TTTTATTTATTA
1 TTTTATTT-TTA
* *
10402928 TTTT-TATGT-
1 TTTTATTTTTA
*
10402937 TTTTATTTCTA
1 TTTTATTTTTA
*
10402948 TCTT-TTTTTA
1 TTTTATTTTTA
* *
10402958 ATCTACTTTTTA
1 TTTTA-TTTTTA
*
10402970 TTTTATTTTTC
1 TTTTATTTTTA
10402981 TTTTA-TTTTA
1 TTTTATTTTTA
10402991 CTTTTATTT
1 -TTTTATTT
10403000 CATCCTTAGG
Statistics
Matches: 53, Mismatches: 13, Indels: 12
0.68 0.17 0.15
Matches are distributed among these distances:
9 4 0.08
10 14 0.26
11 20 0.38
12 15 0.28
ACGTcount: A:0.17, C:0.07, G:0.01, T:0.75
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:10412083 original size:27 final size:26
Alignment explanation
Indices: 10412052--10412229 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
10412042 TAAATTGTAC
10412052 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
10412079 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
10412105 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
10412133 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
10412161 GGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
10412188 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
10412215 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
10412230 GACTCGATAT
Statistics
Matches: 131, Mismatches: 15, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.01
27 104 0.79
28 26 0.20
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:10412168 original size:82 final size:81
Alignment explanation
Indices: 10412053--10412208 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
10412043 AAATTGTACA
*
10412053 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
10412117 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
10412134 GCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
10412199 TGCGAGTTGA
65 TGCGAATTGA
10412209 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:10412220 original size:82 final size:81
Alignment explanation
Indices: 10412049--10412229 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
10412039 GATTAAATTG
*
10412049 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
10412114 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
10412130 TGCGGCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
10412194 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
10412212 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
10412230 GACTCGATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:10418916 original size:25 final size:25
Alignment explanation
Indices: 10418873--10418943 Score: 72
Period size: 25 Copynumber: 2.9 Consensus size: 25
10418863 TATGCTCATA
* *
10418873 CGAGCTGTA-AACGATAAGCTCCTT
1 CGAGCTGAATAACGGTAAGCTCCTT
*
10418897 CGAGCTGAATAACGGTAAGCTCTTT
1 CGAGCTGAATAACGGTAAGCTCCTT
* * **
10418922 TGAGTTGAATAATAGTAAGCTC
1 CGAGCTGAATAACGGTAAGCTC
10418944 AGACGAGTTG
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
24 8 0.21
25 31 0.79
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (25 bp):
CGAGCTGAATAACGGTAAGCTCCTT
Found at i:10422478 original size:38 final size:39
Alignment explanation
Indices: 10422394--10422564 Score: 168
Period size: 38 Copynumber: 4.4 Consensus size: 39
10422384 ATAAAATAAA
* *
10422394 TTGTGCTGAG-ATTGTATCCGGGCTTAAAAACCCGCAGGCT
1 TTGTGCTG-GTATTATATCCGGG-TTAAAATCCCGCAGGCT
*
10422434 TTGTGCTGGTAATATATCCGGGTT-AAATCCCGCAGGCT
1 TTGTGCTGGTATTATATCCGGGTTAAAATCCCGCAGGCT
* * ** *
10422472 TCGTGCTGGTATTATATCTGGGTT-AAATCATGCAGGCC
1 TTGTGCTGGTATTATATCCGGGTTAAAATCCCGCAGGCT
* * * * *
10422510 TAGTGCTGGTATTATATCTGAGTTGAAAGTCCCGTAGGCT
1 TTGTGCTGGTATTATATCCGGGTT-AAAATCCCGCAGGCT
*
10422550 TTGTGCTGGTGTTAT
1 TTGTGCTGGTATTAT
10422565 GTTTGGATTT
Statistics
Matches: 110, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
38 67 0.61
39 3 0.03
40 40 0.36
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.34
Consensus pattern (39 bp):
TTGTGCTGGTATTATATCCGGGTTAAAATCCCGCAGGCT
Found at i:10425403 original size:13 final size:13
Alignment explanation
Indices: 10425385--10425409 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10425375 AATTGGATGC
10425385 TATTATTATTTTT
1 TATTATTATTTTT
10425398 TATTATTATTTT
1 TATTATTATTTT
10425410 GTATGTCTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
TATTATTATTTTT
Found at i:10427259 original size:27 final size:27
Alignment explanation
Indices: 10427229--10427290 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
10427219 ATTTACTAAA
10427229 ATACCCCTAAGTATG-AAAATTACCATT
1 ATACCCCTAAG-ATGCAAAATTACCATT
* *
10427256 ATA-CCCTTAGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCATT
10427282 ATACCCCTA
1 ATACCCCTA
10427291 GGGTTAGTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 2 0.07
26 21 0.70
27 7 0.23
ACGTcount: A:0.37, C:0.26, G:0.08, T:0.29
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCATT
Found at i:10427454 original size:28 final size:28
Alignment explanation
Indices: 10427398--10427455 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
10427388 GGAAGCGTTC
**
10427398 TGGTGGCTATGCCACAAATATCTGTTTT
1 TGGTGGCTATGCCACAAATATCTAATTT
*
10427426 TGGTGGCTCTGCCACAAATATCTAATTT
1 TGGTGGCTATGCCACAAATATCTAATTT
10427454 TG
1 TG
10427456 TGCCACAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.38
Consensus pattern (28 bp):
TGGTGGCTATGCCACAAATATCTAATTT
Found at i:10433222 original size:43 final size:42
Alignment explanation
Indices: 10433175--10433273 Score: 110
Period size: 42 Copynumber: 2.3 Consensus size: 42
10433165 TCCCAAACGT
*
10433175 GGTCTTACATGTAACCAAATATCTATGCC-ACTATCCCAGACAG
1 GGTCTTACATGTAACCAAATA-CGATGCCGA-TATCCCAGACAG
* * * * *
10433218 GGTCTTACATGAAATCAAATACGATGCCGATGTCTCAGACAT
1 GGTCTTACATGTAACCAAATACGATGCCGATATCCCAGACAG
*
10433260 GGTCTTACACGTAA
1 GGTCTTACATGTAA
10433274 ATCATAAGTC
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
42 27 0.57
43 20 0.43
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.26
Consensus pattern (42 bp):
GGTCTTACATGTAACCAAATACGATGCCGATATCCCAGACAG
Found at i:10433301 original size:44 final size:42
Alignment explanation
Indices: 10433209--10433317 Score: 130
Period size: 44 Copynumber: 2.5 Consensus size: 42
10433199 ATGCCACTAT
* * * *
10433209 CCCAGACAGGGTCTTACATGAAATCAAATACGATGCCGATGT
1 CCCAGACATGGTCTTACACGAAATCAAATACGATGCCAATGC
*
10433251 CTCAGACATGGTCTTACACGTAAATCATAAGT-CGATGCCAATGC
1 CCCAGACATGGTCTTACACG-AAATCA-AA-TACGATGCCAATGC
*
10433295 CCCAGACATGGTCTTGCACGAAA
1 CCCAGACATGGTCTTACACGAAA
10433318 ACACATATCG
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
42 17 0.30
43 9 0.16
44 30 0.53
45 1 0.02
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (42 bp):
CCCAGACATGGTCTTACACGAAATCAAATACGATGCCAATGC
Found at i:10438146 original size:33 final size:33
Alignment explanation
Indices: 10438104--10438170 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
10438094 TACCCATGAT
*
10438104 AGCTGAATTATTATAATGCCCCTAGTAGCCCAC
1 AGCTGAATTACTATAATGCCCCTAGTAGCCCAC
*
10438137 AGCTGAATTACTATAATGCCCCTAGTATCCCAC
1 AGCTGAATTACTATAATGCCCCTAGTAGCCCAC
10438170 A
1 A
10438171 TTTATTAACT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.27
Consensus pattern (33 bp):
AGCTGAATTACTATAATGCCCCTAGTAGCCCAC
Found at i:10447207 original size:48 final size:48
Alignment explanation
Indices: 10447145--10448153 Score: 1847
Period size: 48 Copynumber: 21.0 Consensus size: 48
10447135 TATATATGTG
* *
10447145 TGGTAAATCTGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
*
10447193 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
10447241 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
10447289 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
10447337 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
10447385 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
10447433 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
10447481 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
10447529 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
10447577 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
10447625 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
10447673 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
10447721 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
10447769 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
10447817 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
10447865 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
*
10447913 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
* * * *
10447961 TGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATATATATG
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
* * * * *
10448009 TGGTAAAGCCGAATGGCTAATATGAAATATATATGAGATATGAATATG
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
*
10448057 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATT
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
* * * * *
10448105 TGGTAAAGCTGAATGGCTAATGTGAAATATGTAGGAGATGTGTGTATA
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
10448153 T
1 T
10448154 TGTGGCCGAA
Statistics
Matches: 939, Mismatches: 22, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 939 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATA
Found at i:10448339 original size:37 final size:37
Alignment explanation
Indices: 10448284--10448460 Score: 300
Period size: 37 Copynumber: 4.8 Consensus size: 37
10448274 GGAAATATAT
*
10448284 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10448321 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10448358 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10448395 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
10448432 TCCGGGTAAGACCCGATAACTGCGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
10448461 GGACTATTCG
Statistics
Matches: 132, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 132 1.00
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:10449780 original size:23 final size:23
Alignment explanation
Indices: 10449748--10449820 Score: 59
Period size: 23 Copynumber: 3.4 Consensus size: 23
10449738 AGAGTGATAT
10449748 ATTCGGGCTAAGTCCCGAAGAGC
1 ATTCGGGCTAAGTCCCGAAGAGC
* * *
10449771 ATTCGTGCT-AGT---G-ATA-T
1 ATTCGGGCTAAGTCCCGAAGAGC
*
10449788 ATCCGGGCTAAGTCCCGAAGAGC
1 ATTCGGGCTAAGTCCCGAAGAGC
*
10449811 ATTCGTGCTA
1 ATTCGGGCTA
10449821 GTGATATACC
Statistics
Matches: 35, Mismatches: 9, Indels: 12
0.62 0.16 0.21
Matches are distributed among these distances:
17 7 0.20
18 5 0.14
19 1 0.03
21 1 0.03
22 5 0.14
23 16 0.46
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (23 bp):
ATTCGGGCTAAGTCCCGAAGAGC
Found at i:10449943 original size:40 final size:40
Alignment explanation
Indices: 10449740--10449929 Score: 256
Period size: 40 Copynumber: 4.8 Consensus size: 40
10449730 GAGAATTGAG
*
10449740 AGTGATATATTCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
10449780 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
10449820 AGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
10449860 AGAGTTATA-CCAGGGTTAAGTCCGGAAGAACATTCGTGCT
1 AGTGATATATCC-GGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
10449900 GGTGTTATATCCGGGCTCGGTCCCGAAGAG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAG
10449930 AAATCATGCT
Statistics
Matches: 132, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
39 2 0.02
40 128 0.97
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:10453997 original size:48 final size:48
Alignment explanation
Indices: 10453926--10454127 Score: 323
Period size: 48 Copynumber: 4.2 Consensus size: 48
10453916 CAAGACAAAT
* * * *
10453926 ATATATATGTGTGGTAATGCCGAACGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
10453974 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
10454022 ATATATATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
10454070 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
10454118 ATGTGTATAT
1 ATATGTATAT
10454128 ATTGTGGCCG
Statistics
Matches: 144, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 144 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:10454315 original size:37 final size:37
Alignment explanation
Indices: 10454260--10455102 Score: 1470
Period size: 37 Copynumber: 22.8 Consensus size: 37
10454250 GGAAATATAT
*
10454260 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10454297 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10454334 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10454371 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10454408 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10454445 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10454482 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10454519 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10454556 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10454593 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10454630 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10454667 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10454704 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10454741 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10454778 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10454815 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10454852 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10454889 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10454926 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10454963 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10455000 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
10455037 TCCGGGTAAGACCCGATGACTACCTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10455074 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
10455103 GGACTATTCG
Statistics
Matches: 761, Mismatches: 45, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 761 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:10454454 original size:111 final size:111
Alignment explanation
Indices: 10454260--10455102 Score: 1625
Period size: 111 Copynumber: 7.6 Consensus size: 111
10454250 GGAAATATAT
10454260 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATGTCCGGGTAAGACCTGATGACTACGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATGTCCGGGTAAGACCTGATGACTACGTGTG
10454325 GAGATTATGTTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
66 GAGATTATGTTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
10454371 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATGTCCGGGTAAGACCTGATGACTACGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATGTCCGGGTAAGACCTGATGACTACGTGTG
10454436 GAGATTATGTTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
66 GAGATTATGTTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
10454482 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATGTCCGGGTAAGACCTGATGACTACGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATGTCCGGGTAAGACCTGATGACTACGTGTG
10454547 GAGATTATGTTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
66 GAGATTATGTTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
10454593 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATGTCCGGGTAAGACCTGATGACTACGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATGTCCGGGTAAGACCTGATGACTACGTGTG
10454658 GAGATTATGTTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
66 GAGATTATGTTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
10454704 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATGTCCGGGTAAGACCTGATGACTACGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATGTCCGGGTAAGACCTGATGACTACGTGTG
10454769 GAGATTATGTTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
66 GAGATTATGTTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
10454815 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATGTCCGGGTAAGACCTGATGACTACGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATGTCCGGGTAAGACCTGATGACTACGTGTG
10454880 GAGATTATGTTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
66 GAGATTATGTTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
10454926 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATGTCCGGGTAAGACCTGATGACTACGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATGTCCGGGTAAGACCTGATGACTACGTGTG
10454991 GAGATTATG-TCTGGGTAAGACCCGATGACTACGTGTGGAGATTATG
66 GAGATTATGTTC-GGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * * * *
10455037 TCCGGGTAAGACCCGATGACTACCTGTGGAGATTTTGTCCGGGTAAGACCCGATAACTACGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATGTCCGGGTAAGACCTGATGACTACGTGTG
10455102 G
66 G
10455103 GGACTATTCG
Statistics
Matches: 726, Mismatches: 5, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
110 2 0.00
111 724 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.25
Consensus pattern (111 bp):
TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATGTCCGGGTAAGACCTGATGACTACGTGTG
GAGATTATGTTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:10456819 original size:48 final size:48
Alignment explanation
Indices: 10456765--10456989 Score: 378
Period size: 48 Copynumber: 4.7 Consensus size: 48
10456755 CTAGCCGAAT
* *
10456765 CACTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAATTCA
*
10456813 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAATTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAATTCA
10456861 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAATTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAATTCA
* * *
10456909 CATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAATTCA
* *
10456957 CATTAGCAATTCGGCTTTACCACATATACATAT
1 CACTAGCCATTCGGCTTTACCACATATACATAT
10456990 ATATTTATCT
Statistics
Matches: 168, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 168 1.00
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.33
Consensus pattern (48 bp):
CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAATTCA
Found at i:10464076 original size:18 final size:18
Alignment explanation
Indices: 10464051--10464100 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
10464041 TTGGGTTGTA
10464051 TGGG-CCACATGGGCGTG
1 TGGGCCCACATGGGCGTG
* ***
10464068 TTGGCCCACATAAACGTG
1 TGGGCCCACATGGGCGTG
10464086 TGGGCCCACATGGGC
1 TGGGCCCACATGGGC
10464101 TTGCATGATG
Statistics
Matches: 24, Mismatches: 8, Indels: 1
0.73 0.24 0.03
Matches are distributed among these distances:
17 3 0.12
18 21 0.88
ACGTcount: A:0.18, C:0.28, G:0.36, T:0.18
Consensus pattern (18 bp):
TGGGCCCACATGGGCGTG
Found at i:10476529 original size:27 final size:27
Alignment explanation
Indices: 10476499--10476913 Score: 512
Period size: 27 Copynumber: 15.4 Consensus size: 27
10476489 TAATAAAGAG
*
10476499 AAATTACCGAAACACCCTCAATTTGTA
1 AAATTACCGAAACACCCTCGATTTGTA
* * *
10476526 AAATTATCGAAACACCCTTGA-TTGTG
1 AAATTACCGAAACACCCTCGATTTGTA
** * *
10476552 AAATTACTAAAATACCCTCGATTTGTG
1 AAATTACCGAAACACCCTCGATTTGTA
* *
10476579 AAATTATCGAAACACCTTCGATTTGTA
1 AAATTACCGAAACACCCTCGATTTGTA
* * *
10476606 AAATTATCAAAACACCCTTGATTTGTA
1 AAATTACCGAAACACCCTCGATTTGTA
* *
10476633 AAATTACCGAAACACCCTCAAATTGTA
1 AAATTACCGAAACACCCTCGATTTGTA
* * * *
10476660 AAATTACTGAAATACCCTCAAATTGTA
1 AAATTACCGAAACACCCTCGATTTGTA
*
10476687 AAATTATCGAAACACCCTCGATTTG-A
1 AAATTACCGAAACACCCTCGATTTGTA
* * * *
10476713 AAATTACCAAAATACACTCGATTTGTG
1 AAATTACCGAAACACCCTCGATTTGTA
*
10476740 AAATTACAGAAACACCCTCGATTTGTA
1 AAATTACCGAAACACCCTCGATTTGTA
* *
10476767 AAATTACCGAAACACCTTTGATTTGTA
1 AAATTACCGAAACACCCTCGATTTGTA
*
10476794 AAATTACCGAAACACCCTCGACTTGTA
1 AAATTACCGAAACACCCTCGATTTGTA
10476821 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACCGAAACACCCTCGATTTGTA
*
10476848 AAATTACCGAAACACCCTCAATTTGTA
1 AAATTACCGAAACACCCTCGATTTGTA
* *
10476875 AAATTACTGAAACACCC-CTTATTTGTA
1 AAATTACCGAAACACCCTC-GATTTGTA
*
10476902 AAATTATCGAAA
1 AAATTACCGAAA
10476914 TAATCTTGTA
Statistics
Matches: 333, Mismatches: 52, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
26 43 0.13
27 290 0.87
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACCGAAACACCCTCGATTTGTA
Found at i:10476764 original size:161 final size:161
Alignment explanation
Indices: 10476499--10476881 Score: 590
Period size: 161 Copynumber: 2.4 Consensus size: 161
10476489 TAATAAAGAG
* *
10476499 AAATTACCGAAACACCCTCAATTTGTAAAATTATCGAAACACCCTTGATTGTG-AAATTACTAAA
1 AAATTACCGAAACACCCTCAATTTGTAAAATTATCGAAACACCCTCGATT-TGAAAATTACCAAA
* * *
10476563 ATACCCTCGATTTGTGAAATTATCGAAACACCTTCGATTTGTAAAATTATCAAAACACCCTTGAT
65 ATACACTCGATTTGTGAAATTATCGAAACACCCTCGATTTGTAAAATTACCAAAACACCCTTGAT
10476628 TTGTAAAATTACCGAAACACCCTCAAATTGTA
130 TTGTAAAATTACCGAAACACCCTCAAATTGTA
* * *
10476660 AAATTACTGAAATACCCTCAAATTGTAAAATTATCGAAACACCCTCGATTTGAAAATTACCAAAA
1 AAATTACCGAAACACCCTCAATTTGTAAAATTATCGAAACACCCTCGATTTGAAAATTACCAAAA
* *
10476725 TACACTCGATTTGTGAAATTA-CAGAAACACCCTCGATTTGTAAAATTACCGAAACACCTTTGAT
66 TACACTCGATTTGTGAAATTATC-GAAACACCCTCGATTTGTAAAATTACCAAAACACCCTTGAT
* *
10476789 TTGTAAAATTACCGAAACACCCTCGACTTGTA
130 TTGTAAAATTACCGAAACACCCTCAAATTGTA
* * *
10476821 AAATTACCGAAACACCCTCGATTTGTAAAATTACCGAAACACCCTCAATTTGTAAAATTAC
1 AAATTACCGAAACACCCTCAATTTGTAAAATTATCGAAACACCCTCGATTTG-AAAATTAC
10476882 TGAAACACCC
Statistics
Matches: 201, Mismatches: 18, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
160 3 0.01
161 190 0.95
162 8 0.04
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (161 bp):
AAATTACCGAAACACCCTCAATTTGTAAAATTATCGAAACACCCTCGATTTGAAAATTACCAAAA
TACACTCGATTTGTGAAATTATCGAAACACCCTCGATTTGTAAAATTACCAAAACACCCTTGATT
TGTAAAATTACCGAAACACCCTCAAATTGTA
Found at i:10476928 original size:27 final size:27
Alignment explanation
Indices: 10476898--10476986 Score: 81
Period size: 27 Copynumber: 3.3 Consensus size: 27
10476888 ACCCCTTATT
*
10476898 TGTAAAATTATCGAAATAATCTTGTAG
1 TGTAAAATTATCGAAATAACCTTGTAG
* **
10476925 TGTAAAATTA-CTAAAATGCCCTTGTAG
1 TGTAAAATTATC-GAAATAACCTTGTAG
* * * *
10476952 TGTAAAATGATCGACATACCCCTGTAG
1 TGTAAAATTATCGAAATAACCTTGTAG
*
10476979 GGTAAAAT
1 TGTAAAAT
10476987 GATTGTTTTG
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.02
27 48 0.96
28 1 0.02
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.31
Consensus pattern (27 bp):
TGTAAAATTATCGAAATAACCTTGTAG
Found at i:10482861 original size:40 final size:40
Alignment explanation
Indices: 10482758--10482973 Score: 273
Period size: 40 Copynumber: 5.5 Consensus size: 40
10482748 CGGATGATAA
* *
10482758 CCGGGCTAAGTCCCGAAGGCATTTGTGC-TGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
10482797 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
10482836 CCGGGCTAAGTCCCGAAGGTATTTGTGTGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
10482876 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
* * *
10482917 -CGGGCTAAGTCCTGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
10482956 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
10482974 TGCTTGGTTT
Statistics
Matches: 157, Mismatches: 14, Indels: 12
0.86 0.08 0.07
Matches are distributed among these distances:
38 17 0.11
39 44 0.28
40 95 0.61
41 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:10498869 original size:51 final size:51
Alignment explanation
Indices: 10498814--10498937 Score: 146
Period size: 51 Copynumber: 2.4 Consensus size: 51
10498804 CGATCACGTT
* *
10498814 TGTGGTACTAAGTGCAGGCCACTATGTGTAA-AAGATAGCTTTG-TTCAAGAG
1 TGTGGTACTATGTGCAGGCCACTATGTG-AAGAAGATAGCTTTGATACAA-AG
* * * *
10498865 TGTGGTACTATGTGAAGGGCACTTTGTGAAGAAGGTAGCTTTGACTACAAAG
1 TGTGGTACTATGTGCAGGCCACTATGTGAAGAAGATAGCTTTGA-TACAAAG
10498917 -GTGGTACTATGTGCAGGCCAC
1 TGTGGTACTATGTGCAGGCCAC
10498938 CGGGCATCCG
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
50 2 0.03
51 54 0.87
52 2 0.03
53 4 0.06
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (51 bp):
TGTGGTACTATGTGCAGGCCACTATGTGAAGAAGATAGCTTTGATACAAAG
Found at i:10500877 original size:40 final size:40
Alignment explanation
Indices: 10500822--10500959 Score: 217
Period size: 40 Copynumber: 3.5 Consensus size: 40
10500812 CGGATGATAA
10500822 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
10500862 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
10500902 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
10500942 -CTGGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
10500960 TACTTGGTTT
Statistics
Matches: 92, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
39 18 0.20
40 74 0.80
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:10505450 original size:15 final size:13
Alignment explanation
Indices: 10505430--10505484 Score: 56
Period size: 15 Copynumber: 3.8 Consensus size: 13
10505420 GTCAGTCTGA
10505430 TTGGATTTTCTTGTT
1 TTGGA-TTTCTT-TT
10505445 TTGGATTTCTTTAT
1 TTGGATTTCTTT-T
10505459 GTTGGATTTCTATATT
1 -TTGGATTTCT-T-TT
10505475 TTGGATTTCT
1 TTGGATTTCT
10505485 CCATTATGGA
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
13 1 0.03
14 7 0.19
15 25 0.69
16 2 0.06
17 1 0.03
ACGTcount: A:0.13, C:0.07, G:0.18, T:0.62
Consensus pattern (13 bp):
TTGGATTTCTTTT
Found at i:10506113 original size:18 final size:18
Alignment explanation
Indices: 10506090--10506125 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
10506080 TATCCTCAAA
*
10506090 GCCCTATCAGGATCATCC
1 GCCCTATCAGGATAATCC
10506108 GCCCTATCAGGATAATCC
1 GCCCTATCAGGATAATCC
10506126 TTGTCTTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.36, G:0.17, T:0.22
Consensus pattern (18 bp):
GCCCTATCAGGATAATCC
Found at i:10508870 original size:42 final size:42
Alignment explanation
Indices: 10508806--10508975 Score: 232
Period size: 42 Copynumber: 4.0 Consensus size: 42
10508796 GTTACTCGGG
* *
10508806 AATCTCGCACACTAAATGCCAATGCGTAGCCGAAGCTAACTC
1 AATCTCGCACACTAAATGCCAATGCATAGCCGAAGCTATCTC
** * *
10508848 AATAACGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTT
1 AATCTCGCACACTAAATGCCAATGCATAGCCGAAGCTATCTC
*
10508890 GATCTCGCACACTAAATGCCAATGCATAGCCGAAGCTATCTC
1 AATCTCGCACACTAAATGCCAATGCATAGCCGAAGCTATCTC
* * * * *
10508932 GATCTCGCACAGTAAGTGCCAACGCATAGCCAAAGCTATCTC
1 AATCTCGCACACTAAATGCCAATGCATAGCCGAAGCTATCTC
10508974 AA
1 AA
10508976 ATATTTTCGT
Statistics
Matches: 112, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 112 1.00
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.20
Consensus pattern (42 bp):
AATCTCGCACACTAAATGCCAATGCATAGCCGAAGCTATCTC
Found at i:10508948 original size:84 final size:84
Alignment explanation
Indices: 10508807--10508972 Score: 260
Period size: 84 Copynumber: 2.0 Consensus size: 84
10508797 TTACTCGGGA
* *
10508807 ATCTCGCACACTAAATGCCAATGCGTAGCCGAAGCTAACTCAATAACGCACACTAAGTGCCAATG
1 ATCTCGCACACTAAATGCCAATGCATAGCCGAAGCTAACTCAATAACGCACACTAAGTGCCAACG
*
10508872 CATAGCCGAAGCTATCTTG
66 CATAGCCAAAGCTATCTTG
* * ** *
10508891 ATCTCGCACACTAAATGCCAATGCATAGCCGAAGCTATCTCGATCTCGCACAGTAAGTGCCAACG
1 ATCTCGCACACTAAATGCCAATGCATAGCCGAAGCTAACTCAATAACGCACACTAAGTGCCAACG
10508956 CATAGCCAAAGCTATCT
66 CATAGCCAAAGCTATCT
10508973 CAAATATTTT
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
84 74 1.00
ACGTcount: A:0.33, C:0.30, G:0.17, T:0.20
Consensus pattern (84 bp):
ATCTCGCACACTAAATGCCAATGCATAGCCGAAGCTAACTCAATAACGCACACTAAGTGCCAACG
CATAGCCAAAGCTATCTTG
Found at i:10518082 original size:40 final size:40
Alignment explanation
Indices: 10518003--10518164 Score: 164
Period size: 40 Copynumber: 4.0 Consensus size: 40
10517993 TGGATGATAA
* * ** *
10518003 CCGGACTAAGATCCGAAGGCATTCGTGCAAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
* * * *
10518043 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-CTATAT
* *
10518083 CCGGGCTAAGACTCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
* * * * *
10518123 CTGGGATAAGACCCGAAGGCATTTGTGTGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
10518163 CC
1 CC
10518165 CGCTAAATCC
Statistics
Matches: 100, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
39 2 0.02
40 96 0.96
41 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
Found at i:10526038 original size:40 final size:40
Alignment explanation
Indices: 10525959--10526086 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 40
10525949 CGGATGATAA
* * ** *
10525959 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
* * *
10525999 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
*
10526039 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
10526079 CC-GGCTAA
1 CCGGGCTAA
10526087 ATCCCGATGA
Statistics
Matches: 74, Mismatches: 12, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
39 8 0.11
40 64 0.86
41 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
Found at i:10529597 original size:28 final size:28
Alignment explanation
Indices: 10529565--10529619 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
10529555 CCCATTACTC
*
10529565 ACAAGTACTTAGTACCTTTGTGAACTAG
1 ACAAGTACTTAGTACCTTTGTAAACTAG
10529593 ACAAGTACTTAGTACCTTTGTAAACTA
1 ACAAGTACTTAGTACCTTTGTAAACTA
10529620 CAACACACAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.33
Consensus pattern (28 bp):
ACAAGTACTTAGTACCTTTGTAAACTAG
Found at i:10532966 original size:42 final size:42
Alignment explanation
Indices: 10532920--10533020 Score: 112
Period size: 42 Copynumber: 2.4 Consensus size: 42
10532910 CCAACTATGA
* ** *
10532920 TCTTACACGAAGTCTCACATCAATGCCATGTCCCAAACATGG
1 TCTTACACGAAATCTCACATCAATGCCACATCCCAAACACGG
* * * * *
10532962 TCTTATACGAAATCACATATCGATGCCGCATCCCAAACACGG
1 TCTTACACGAAATCTCACATCAATGCCACATCCCAAACACGG
*
10533004 TGTTACACGAAATCTCA
1 TCTTACACGAAATCTCA
10533021 TACCGAAGTA
Statistics
Matches: 47, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.33, C:0.30, G:0.14, T:0.24
Consensus pattern (42 bp):
TCTTACACGAAATCTCACATCAATGCCACATCCCAAACACGG
Found at i:10533052 original size:42 final size:42
Alignment explanation
Indices: 10533006--10533096 Score: 101
Period size: 42 Copynumber: 2.2 Consensus size: 42
10532996 AAACACGGTG
* *
10533006 TTACACGAAATCTCATACCGAAGTAATATCCCAGATATAGTC
1 TTACACGAAATCTCATACCGAAGCAATATCCCAGACATAGTC
** * * ** *
10533048 TTACACGGGATCTCATATCGATGCCCTATCCCAGACATGGTC
1 TTACACGAAATCTCATACCGAAGCAATATCCCAGACATAGTC
10533090 TTACACG
1 TTACACG
10533097 TATCACAATT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.26
Consensus pattern (42 bp):
TTACACGAAATCTCATACCGAAGCAATATCCCAGACATAGTC
Found at i:10533148 original size:37 final size:36
Alignment explanation
Indices: 10533066--10533213 Score: 181
Period size: 37 Copynumber: 4.0 Consensus size: 36
10533056 GATCTCATAT
* * *
10533066 CGATGCCCTATCCCAGAC-ATGGTCTTACACGTATCA
1 CGATGCCATAGCCCAG-CTATGGTCTTACATGTATCA
* *
10533102 CAATTCCATAGCCCAGCTATGGTCTTACATGTCATCA
1 CGATGCCATAGCCCAGCTATGGTCTTACATGT-ATCA
*
10533139 CGATGCCATAGCCCAGCTATGGTCTTACATGTTATTA
1 CGATGCCATAGCCCAGCTATGGTCTTACATG-TATCA
* *
10533176 CTATGCCATAGCCCAGCTATGGTCTTACACGTACTCA
1 CGATGCCATAGCCCAGCTATGGTCTTACATGTA-TCA
10533213 C
1 C
10533214 ATGTATTGCC
Statistics
Matches: 97, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
35 1 0.01
36 27 0.28
37 68 0.70
38 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.28
Consensus pattern (36 bp):
CGATGCCATAGCCCAGCTATGGTCTTACATGTATCA
Found at i:10533161 original size:73 final size:74
Alignment explanation
Indices: 10533066--10533204 Score: 201
Period size: 74 Copynumber: 1.9 Consensus size: 74
10533056 GATCTCATAT
* * *
10533066 CGATGCCCTATCCCAGACATGGTCTTACACG-TATCACAATTCCATAGCCCAGCTATGGTCTTAC
1 CGATGCCATAGCCCAGACATGGTCTTACACGTTATCACAATGCCATAGCCCAGCTATGGTCTTAC
10533130 ATGTCATCA
66 ATGTCATCA
* * *
10533139 CGATGCCATAGCCCAG-CTATGGTCTTACATGTTATTACTATGCCATAGCCCAGCTATGGTCTTA
1 CGATGCCATAGCCCAGAC-ATGGTCTTACACGTTATCACAATGCCATAGCCCAGCTATGGTCTTA
10533203 CA
65 CA
10533205 CGTACTCACA
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
72 1 0.02
73 26 0.45
74 31 0.53
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (74 bp):
CGATGCCATAGCCCAGACATGGTCTTACACGTTATCACAATGCCATAGCCCAGCTATGGTCTTAC
ATGTCATCA
Found at i:10535273 original size:32 final size:32
Alignment explanation
Indices: 10535230--10535296 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
10535220 TACTCAATTG
*
10535230 AATTTTCGTACATACCTGTACCATCTCGTACC
1 AATTTTCGTACATACCTATACCATCTCGTACC
*
10535262 AATTTTTGTACATACCTATACCATCTCGTACC
1 AATTTTCGTACATACCTATACCATCTCGTACC
10535294 AAT
1 AAT
10535297 CTCACACTCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.28, C:0.28, G:0.07, T:0.36
Consensus pattern (32 bp):
AATTTTCGTACATACCTATACCATCTCGTACC
Found at i:10535426 original size:42 final size:42
Alignment explanation
Indices: 10535362--10535483 Score: 181
Period size: 42 Copynumber: 2.9 Consensus size: 42
10535352 TTACTTGGGA
* * * **
10535362 ATCTTGCACACTAAGTGCCAATGCGTTGCCGAAGCTATCTTG
1 ATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCCCG
*
10535404 ATCTCGCACACTAAGTGCCAATGCATAACCGAAGCTATCCCG
1 ATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCCCG
*
10535446 ATCTCGCACACTAAGTGCCAATACATAGCCGAAGCTAT
1 ATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCTAT
10535484 ATCAAATATT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.23
Consensus pattern (42 bp):
ATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCCCG
Found at i:10537724 original size:50 final size:51
Alignment explanation
Indices: 10537654--10537840 Score: 178
Period size: 51 Copynumber: 3.7 Consensus size: 51
10537644 TGATTTTACG
* * * * *
10537654 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACTAGAT-GGTTAGG
1 TCACATGTGTAGTACTAAGTGCAGGCCACTATGTGTACCAGATAGCTTAGA
* * * * *
10537704 TCGCATGTGTAGTACTAAGTGCAGGCCACGATGCGTACCCGATAGCTTCGA
1 TCACATGTGTAGTACTAAGTGCAGGCCACTATGTGTACCAGATAGCTTAGA
* * ** * *
10537755 TCACATGTGTGGTACTAAGTGTAGGCCACTATGTGTAAAAGATAGCTTTGG
1 TCACATGTGTAGTACTAAGTGCAGGCCACTATGTGTACCAGATAGCTTAGA
* * * * *
10537806 TCACAAGTGTGGTACTATGTGAAGGCCACTTTGTG
1 TCACATGTGTAGTACTAAGTGCAGGCCACTATGTG
10537841 AAAAAGGTAG
Statistics
Matches: 112, Mismatches: 24, Indels: 1
0.82 0.18 0.01
Matches are distributed among these distances:
50 36 0.32
51 76 0.68
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (51 bp):
TCACATGTGTAGTACTAAGTGCAGGCCACTATGTGTACCAGATAGCTTAGA
Found at i:10537835 original size:51 final size:51
Alignment explanation
Indices: 10537744--10537885 Score: 178
Period size: 51 Copynumber: 2.8 Consensus size: 51
10537734 ATGCGTACCC
* * * * *
10537744 GATAGCTTCGATCACATGTGTGGTACTAAGTGTAGGCCACTATGTGTAAAA
1 GATAGCTTTGGTCACAAGTGTGGTACTATGTGTAGGCCACTATGTGAAAAA
* *
10537795 GATAGCTTTGGTCACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAAAA
1 GATAGCTTTGGTCACAAGTGTGGTACTATGTGTAGGCCACTATGTGAAAAA
* * *
10537846 GGTAGCTTT-GACTACAAGGGTGGTACTATGTGTAGGCCAC
1 GATAGCTTTGGTC-ACAAGTGTGGTACTATGTGTAGGCCAC
10537886 CGGGCATTTG
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
50 2 0.03
51 77 0.97
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (51 bp):
GATAGCTTTGGTCACAAGTGTGGTACTATGTGTAGGCCACTATGTGAAAAA
Found at i:10542458 original size:30 final size:30
Alignment explanation
Indices: 10542422--10542481 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
10542412 TTCATATTGA
10542422 TTATTTGGGTTGTAACCCTAATCAATTATG
1 TTATTTGGGTTGTAACCCTAATCAATTATG
10542452 TTATTTGGGTTGTAACCCTAATCAATTATG
1 TTATTTGGGTTGTAACCCTAATCAATTATG
10542482 CATGCATGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.43
Consensus pattern (30 bp):
TTATTTGGGTTGTAACCCTAATCAATTATG
Found at i:10545398 original size:27 final size:27
Alignment explanation
Indices: 10545368--10545544 Score: 158
Period size: 27 Copynumber: 6.5 Consensus size: 27
10545358 AAATTGTACA
* * *
10545368 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
10545395 GCACTCAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
10545422 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
** *
10545449 GCACTAAGTGTGCGAGCCTGACTATGTA
1 GCACTAAGTGTGCGA-ATTGACTATGTG
* * *
10545477 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * * *
10545504 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACTATGTG
*
10545531 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
10545545 GGCTCAATGT
Statistics
Matches: 122, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 99 0.81
28 23 0.19
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:10545481 original size:82 final size:81
Alignment explanation
Indices: 10545368--10545523 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
10545358 AAATTGTACA
** * * *
10545368 GCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGGGTGCGACCTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
10545432 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
10545449 GCACTAAGTGTGCGAGCCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGGGTGCGA-CCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
10545514 TGCGAGTTGA
65 TGCGAATTGA
10545524 TTATATAGCA
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGGGTGCGACCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:10545535 original size:82 final size:81
Alignment explanation
Indices: 10545364--10545544 Score: 193
Period size: 82 Copynumber: 2.2 Consensus size: 81
10545354 GATTAAATTG
* ** * * *
10545364 TACAGCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGACCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
10545429 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
10545445 TGCGGCACTAAGTGTGCGAGCCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGA-CCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
10545509 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
10545527 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
10545545 GGCTCAATGT
Statistics
Matches: 80, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
81 17 0.21
82 63 0.79
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGACCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:10552012 original size:20 final size:20
Alignment explanation
Indices: 10551986--10552039 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
10551976 AACTTACAAG
10551986 ATGTATGGGTAGAAATAAAC
1 ATGTATGGGTAGAAATAAAC
* * *
10552006 TTGTATGGGTAGAACTTAAC
1 ATGTATGGGTAGAAATAAAC
*
10552026 ATGTATGGATAGAA
1 ATGTATGGGTAGAA
10552040 GTGGAGTTGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.39, C:0.06, G:0.26, T:0.30
Consensus pattern (20 bp):
ATGTATGGGTAGAAATAAAC
Found at i:10552022 original size:42 final size:40
Alignment explanation
Indices: 10551958--10552039 Score: 92
Period size: 42 Copynumber: 2.0 Consensus size: 40
10551948 AGCATTGCAG
* *
10551958 ATAAACTTGTACCGATACAACTTACAAGATGTATGGGTAGAA
1 ATAAACTTGTACCGATACAACTT--AACATGTATGGATAGAA
** * *
10552000 ATAAACTTGTATGGGTAGAACTTAACATGTATGGATAGAA
1 ATAAACTTGTACCGATACAACTTAACATGTATGGATAGAA
10552040 GTGGAGTTGT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
40 15 0.44
42 19 0.56
ACGTcount: A:0.40, C:0.11, G:0.21, T:0.28
Consensus pattern (40 bp):
ATAAACTTGTACCGATACAACTTAACATGTATGGATAGAA
Found at i:10553462 original size:70 final size:70
Alignment explanation
Indices: 10553346--10553510 Score: 228
Period size: 70 Copynumber: 2.4 Consensus size: 70
10553336 GAGATTAAAA
* * *
10553346 TTAACATTAAAATTAA--TTTTTAATTAAAATAGTGAGAAAGTGAGCTATGGGAGTATTTTCTAG
1 TTAAGATTAAAATTAACTTTTTTAATAAAAATAGTGAGAAAGTGAGCTATGAGAGTATTTTCTAG
10553409 TCAAT
66 TCAAT
*
10553414 TTAAGATTAAAATTAACTTTTTTAATAAAAATAGTGA-ATAAGTGAGCTATGAGAGTGTTTTCTA
1 TTAAGATTAAAATTAACTTTTTTAATAAAAATAGTGAGA-AAGTGAGCTATGAGAGTATTTTCTA
*
10553478 GTCAGT
65 GTCAAT
* * *
10553484 GTAGGATTAAAATTAACTTTTTAAATA
1 TTAAGATTAAAATTAACTTTTTTAATA
10553511 GTGAAGAAAT
Statistics
Matches: 86, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
68 15 0.17
69 1 0.01
70 70 0.81
ACGTcount: A:0.40, C:0.05, G:0.16, T:0.39
Consensus pattern (70 bp):
TTAAGATTAAAATTAACTTTTTTAATAAAAATAGTGAGAAAGTGAGCTATGAGAGTATTTTCTAG
TCAAT
Found at i:10554792 original size:27 final size:27
Alignment explanation
Indices: 10554762--10554820 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
10554752 AATCGGATTG
* **
10554762 TTCTTTCAGCGTTTGCCATTTTTACCA
1 TTCTTTCAGAGTTTGCCACATTTACCA
* *
10554789 TTCTTTTAGAGTTTGTCACATTTACCA
1 TTCTTTCAGAGTTTGCCACATTTACCA
10554816 TTCTT
1 TTCTT
10554821 CCCTTTCTGG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.17, C:0.22, G:0.10, T:0.51
Consensus pattern (27 bp):
TTCTTTCAGAGTTTGCCACATTTACCA
Found at i:10554955 original size:26 final size:26
Alignment explanation
Indices: 10554918--10555010 Score: 141
Period size: 26 Copynumber: 3.6 Consensus size: 26
10554908 CCATAGATCA
* * *
10554918 CCACGAAGGCTTCCATTTCAGTTACG
1 CCACAAAGGCTTCCACTTCAGATACG
* *
10554944 CCACAAAAGCTTCCACTTCAGATACA
1 CCACAAAGGCTTCCACTTCAGATACG
10554970 CCACAAAGGCTTCCACTTCAGATACG
1 CCACAAAGGCTTCCACTTCAGATACG
10554996 CCACAAAGGCTTCCA
1 CCACAAAGGCTTCCA
10555011 TTTTCTGACG
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 60 1.00
ACGTcount: A:0.31, C:0.34, G:0.14, T:0.20
Consensus pattern (26 bp):
CCACAAAGGCTTCCACTTCAGATACG
Found at i:10568236 original size:43 final size:42
Alignment explanation
Indices: 10568164--10568325 Score: 170
Period size: 43 Copynumber: 3.8 Consensus size: 42
10568154 CAGAAAGACC
10568164 ATACAATGCCAACGTCCCAGAC-GTGGTCTTACATGTAATCAA
1 ATACAATGCCAACGTCCCAGACAG-GGTCTTACATGTAATCAA
* * * *
10568206 ATATCAATGTC-ACTGTCCTAGACAGGGTCTTACATGAAATCAG
1 ATA-CAATGCCAAC-GTCCCAGACAGGGTCTTACATGTAATCAA
* *
10568249 ATACAATGCCAACGTCCCAGACATGGTCTTACACGTAAGTCATA
1 ATACAATGCCAACGTCCCAGACAGGGTCTTACATGTAA-TCA-A
*
10568293 AGT-CAATGCCAACGTCACAGAC-GTGGTCTTACA
1 A-TACAATGCCAACGTCCCAGACAG-GGTCTTACA
10568326 CGATAACACA
Statistics
Matches: 100, Mismatches: 12, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
42 32 0.32
43 38 0.38
44 29 0.29
45 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (42 bp):
ATACAATGCCAACGTCCCAGACAGGGTCTTACATGTAATCAA
Found at i:10574040 original size:48 final size:48
Alignment explanation
Indices: 10573963--10574092 Score: 190
Period size: 48 Copynumber: 2.7 Consensus size: 48
10573953 CTCGTACACT
* *
10573963 AAGTGCTAATATCATGGCCCAAAGCCAAATCAATAAAGGTCGCACCCG
1 AAGTGCTAATATCATGGCCCAAAGTCAAATCAATAAAGCTCGCACCCG
*
10574011 AAGTG-TCAATATCATGGCCCTAAGTCAAATCAATAAAGCTCGCACCCG
1 AAGTGCT-AATATCATGGCCCAAAGTCAAATCAATAAAGCTCGCACCCG
* * *
10574059 AAGTGCTGATATCATGGCTCGAAGTCAAATCAAT
1 AAGTGCTAATATCATGGCCCAAAGTCAAATCAAT
10574093 GTATCCCCTA
Statistics
Matches: 74, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
47 1 0.01
48 72 0.97
49 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (48 bp):
AAGTGCTAATATCATGGCCCAAAGTCAAATCAATAAAGCTCGCACCCG
Found at i:10586867 original size:11 final size:11
Alignment explanation
Indices: 10586853--10586877 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
10586843 TTCAATTTGG
10586853 TTTTTATTTTA
1 TTTTTATTTTA
10586864 TTTTTATTTTA
1 TTTTTATTTTA
10586875 TTT
1 TTT
10586878 CTAAATTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTTATTTTA
Found at i:10598060 original size:51 final size:52
Alignment explanation
Indices: 10598004--10598108 Score: 133
Period size: 57 Copynumber: 2.0 Consensus size: 52
10597994 TCACTATTCA
* *
10598004 CAAAGTGCAAA-T-AATGATAAGCACCGAAGTGCAAAATAATAATGATAAGAC
1 CAAAGTGCAAATTAAACGATAAGCACCAAAGTGCAAAATAAT-ATGATAAGAC
10598055 CAAAGTGCAAATTTTTACAACGATAAGCACCAAAGTGCAAAATAATATGATAAG
1 CAAAGTGCAAA---TTA-AACGATAAGCACCAAAGTGCAAAATAATATGATAAG
10598109 TGTGCTAATT
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
51 11 0.24
55 1 0.02
56 8 0.17
57 26 0.57
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (52 bp):
CAAAGTGCAAATTAAACGATAAGCACCAAAGTGCAAAATAATATGATAAGAC
Found at i:10599162 original size:21 final size:23
Alignment explanation
Indices: 10599123--10599164 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
10599113 TAATAAGTCC
*
10599123 TTAAGCCATCCATCTTTACACTT
1 TTAAGCCATCCATCATTACACTT
10599146 TTAA-CCAT-CATCATTACAC
1 TTAAGCCATCCATCATTACAC
10599165 CTTAAAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 10 0.56
22 4 0.22
23 4 0.22
ACGTcount: A:0.31, C:0.31, G:0.02, T:0.36
Consensus pattern (23 bp):
TTAAGCCATCCATCATTACACTT
Found at i:10605594 original size:17 final size:18
Alignment explanation
Indices: 10605572--10605608 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
10605562 ATAATATGTG
10605572 TTAATTAATATTT-AATT
1 TTAATTAATATTTAAATT
*
10605589 TTAATTATTATTTAAATT
1 TTAATTAATATTTAAATT
10605607 TT
1 TT
10605609 GGTTTTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TTAATTAATATTTAAATT
Found at i:10611672 original size:13 final size:13
Alignment explanation
Indices: 10611654--10611697 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
10611644 AATTAATAAA
10611654 TTCTTTTTGAGTT
1 TTCTTTTTGAGTT
* *
10611667 TTCTTTTTAAGAAT
1 TTCTTTTTGAG-TT
10611681 TTC-TTTTGAGTT
1 TTCTTTTTGAGTT
10611693 TTCTT
1 TTCTT
10611698 GTGGAAGAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
12 4 0.16
13 17 0.68
14 4 0.16
ACGTcount: A:0.14, C:0.09, G:0.11, T:0.66
Consensus pattern (13 bp):
TTCTTTTTGAGTT
Found at i:10612575 original size:25 final size:26
Alignment explanation
Indices: 10612530--10612580 Score: 95
Period size: 25 Copynumber: 2.0 Consensus size: 26
10612520 TGAAAAAAAG
10612530 TAAATTTATATTTTTTTTCTAAGTAT
1 TAAATTTATATTTTTTTTCTAAGTAT
10612556 TAAATTTATA-TTTTTTTCTAAGTAT
1 TAAATTTATATTTTTTTTCTAAGTAT
10612581 CATTTAATCT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (26 bp):
TAAATTTATATTTTTTTTCTAAGTAT
Found at i:10615014 original size:40 final size:40
Alignment explanation
Indices: 10614102--10615007 Score: 1724
Period size: 40 Copynumber: 22.7 Consensus size: 40
10614092 TACCAGCTCG
* * * * * *
10614102 TAGCCTGCGGGTCTCT-AGCCCAGATAGCATTCTAGCACA
1 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
* * *
10614141 AAGCCTGCAGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
10614181 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
10614221 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
10614261 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
10614301 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
10614341 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
10614381 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
10614421 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
10614461 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
10614501 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
10614541 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
10614581 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
10614621 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
10614661 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
10614701 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
10614741 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
10614781 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
10614821 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
10614861 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
10614901 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
10614941 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
10614981 TAGCTTGCGGGTCTTTAAGCCCGGATA
1 TAGCTTGCGGGTCTTTAAGCCCGGATA
10615008 CAATTCCTCA
Statistics
Matches: 856, Mismatches: 10, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
39 13 0.02
40 843 0.98
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (40 bp):
TAGCTTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
Found at i:10620156 original size:68 final size:68
Alignment explanation
Indices: 10620047--10620184 Score: 267
Period size: 68 Copynumber: 2.0 Consensus size: 68
10620037 TCTCTGGGCA
10620047 CAACAGAAATTAGCGTATTCCACCAATAGTAGGCAGAATCACGTAGCAAAGATATAGCACATTTT
1 CAACAGAAATTAGCGTATTCCACCAATAGTAGGCAGAATCACGTAGCAAAGATATAGCACATTTT
10620112 AGG
66 AGG
*
10620115 CAACAGAAATTAGCGTATTCCACCAATAGTATGCAGAATCACGTAGCAAAGATATAGCACATTTT
1 CAACAGAAATTAGCGTATTCCACCAATAGTAGGCAGAATCACGTAGCAAAGATATAGCACATTTT
10620180 AGG
66 AGG
10620183 CA
1 CA
10620185 TTCATCGGGT
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.22
Consensus pattern (68 bp):
CAACAGAAATTAGCGTATTCCACCAATAGTAGGCAGAATCACGTAGCAAAGATATAGCACATTTT
AGG
Found at i:10621614 original size:39 final size:40
Alignment explanation
Indices: 10621559--10621654 Score: 99
Period size: 40 Copynumber: 2.4 Consensus size: 40
10621549 TTCTAGCACC
** *
10621559 AGCCTGCGGGAATTTAAACCCGG-TATA-ATACCAGC-TCGT
1 AGCCTGCGGGTCTTTAAACCCGGATA-ACATACCAGCAT-AT
* * *
10621598 AGCCTGCGGGTCTTTAAGCCTGGATAACATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAACCCGGATAACATACCAGCATAT
10621638 AGCCTGCGGGTCTTTAA
1 AGCCTGCGGGTCTTTAA
10621655 GGCCGAATAC
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
39 20 0.42
40 27 0.56
41 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAACCCGGATAACATACCAGCATAT
Found at i:10625018 original size:16 final size:16
Alignment explanation
Indices: 10624972--10625027 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
10624962 AGTACAATTT
10624972 ATAATAA-AGTACATAA
1 ATAATAATAGTA-ATAA
* *
10624988 ATAATGAT-GACAATAA
1 ATAATAATAG-TAATAA
10625004 ATAATAATAGTAAT-A
1 ATAATAATAGTAATAA
10625019 ATAATAATA
1 ATAATAATA
10625028 ACAATATATC
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
15 10 0.30
16 21 0.64
17 2 0.06
ACGTcount: A:0.61, C:0.04, G:0.07, T:0.29
Consensus pattern (16 bp):
ATAATAATAGTAATAA
Found at i:10625120 original size:24 final size:23
Alignment explanation
Indices: 10625067--10625128 Score: 58
Period size: 24 Copynumber: 2.7 Consensus size: 23
10625057 ATCTAAATTT
*
10625067 TAAAATATATATATAAAAAGGATAA
1 TAAAATA-ATATATAAAAA-GACAA
10625092 T-AAATAGATATATAAATAA-ACAA
1 TAAAATA-ATATATAAA-AAGACAA
10625115 TAAAATAATA-ATAA
1 TAAAATAATATATAA
10625129 TAATACTCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
22 4 0.12
23 7 0.21
24 19 0.58
25 3 0.09
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.27
Consensus pattern (23 bp):
TAAAATAATATATAAAAAGACAA
Found at i:10625337 original size:4 final size:4
Alignment explanation
Indices: 10625328--10625355 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
10625318 AAAATTAAAA
10625328 TAAT TAAT TAAT TAAT TAAT TAAT TAAT
1 TAAT TAAT TAAT TAAT TAAT TAAT TAAT
10625356 ACATCAAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
TAAT
Found at i:10625441 original size:4 final size:4
Alignment explanation
Indices: 10625432--10625458 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
10625422 TTGAGCTAAA
10625432 AATT AATT AATT AATT AATT AATT AAT
1 AATT AATT AATT AATT AATT AATT AAT
10625459 ACATCAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
AATT
Done.