Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 42 of 235
Found at i:13745254 original size:43 final size:43
Alignment explanation
Indices: 13745179--13745266 Score: 140
Period size: 43 Copynumber: 2.0 Consensus size: 43
13745169 CCTAATGATG
* * *
13745179 AATGTCTGGTTTACTCAATATATCCGGACTAACCCAGCTGTAC
1 AATGACTGGATTACTCAATATATCCGGACTAACCCAGCTGCAC
*
13745222 AATGACTGGATTACTCAATATATCCGGGCTAACCCAGCTGCAC
1 AATGACTGGATTACTCAATATATCCGGACTAACCCAGCTGCAC
13745265 AA
1 AA
13745267 CAACCTCCAC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (43 bp):
AATGACTGGATTACTCAATATATCCGGACTAACCCAGCTGCAC
Found at i:13747957 original size:20 final size:20
Alignment explanation
Indices: 13747929--13747967 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
13747919 TGTGAAACAA
13747929 TGTGATCTGAACTT-ATGAGT
1 TGTGATCTG-ACTTCATGAGT
*
13747949 TGTGGTCTGACTTCATGAG
1 TGTGATCTGACTTCATGAG
13747968 ATAAGTGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.21, C:0.13, G:0.28, T:0.38
Consensus pattern (20 bp):
TGTGATCTGACTTCATGAGT
Found at i:13757748 original size:25 final size:25
Alignment explanation
Indices: 13757719--13757766 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
13757709 TTATAATATG
* * *
13757719 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
13757744 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
13757767 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:13757817 original size:9 final size:9
Alignment explanation
Indices: 13757805--13757861 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
13757795 TTTGATAAAC
13757805 ATGATATGT
1 ATGATATGT
*
13757814 ATGATATGCAC
1 ATGATATG--T
*
13757825 ATGACATGT
1 ATGATATGT
*
13757834 ATGATATGCAC
1 ATGATATG--T
13757845 ATGATATGT
1 ATGATATGT
13757854 ATGATATG
1 ATGATATG
13757862 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:13757828 original size:20 final size:20
Alignment explanation
Indices: 13757803--13757865 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
13757793 ATTTTGATAA
13757803 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
13757823 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
13757843 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
13757863 ACA
1 ACA
13757866 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:13757989 original size:47 final size:47
Alignment explanation
Indices: 13757920--13758017 Score: 171
Period size: 47 Copynumber: 2.1 Consensus size: 47
13757910 AGGAAGCGCA
13757920 AAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTATT
13757967 AAAGGGCTTATGCCCCAGTTATTAAAAAAGGGCTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT-AAAAAGGGCTTTGCCCCAGTTATT
13758015 AAA
1 AAA
13758018 AGAGGCTAGG
Statistics
Matches: 49, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
47 23 0.47
48 16 0.33
49 10 0.20
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCCAGTTATT
Found at i:13758034 original size:25 final size:24
Alignment explanation
Indices: 13757919--13758038 Score: 174
Period size: 24 Copynumber: 5.0 Consensus size: 24
13757909 GAGGAAGCGC
13757919 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
13757943 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
13757967 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
13757990 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
13758015 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
13758039 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 1, Indels: 11
0.88 0.01 0.11
Matches are distributed among these distances:
23 29 0.33
24 30 0.34
25 21 0.24
26 9 0.10
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:13758266 original size:31 final size:31
Alignment explanation
Indices: 13758231--13758294 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
13758221 CGTTTACAGT
13758231 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
13758262 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
13758293 AA
1 AA
13758295 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:13762960 original size:26 final size:25
Alignment explanation
Indices: 13762931--13762982 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
13762921 TCCAAGTTAC
* *
13762931 AATCGGCTATGTAATGTTAATAATTA
1 AATCGACTAT-TAATATTAATAATTA
*
13762957 AATCGACTATTCATATTAATAATTA
1 AATCGACTATTAATATTAATAATTA
13762982 A
1 A
13762983 TTGGTTTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (25 bp):
AATCGACTATTAATATTAATAATTA
Found at i:13769151 original size:24 final size:23
Alignment explanation
Indices: 13769118--13769169 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 23
13769108 CCTCTTTTTC
13769118 TCTCTTTCTCAGGCAAAGGCAAA
1 TCTCTTTCTCAGGCAAAGGCAAA
*
13769141 TCTCATTTCTCAGGCAAATGCAAA
1 TCTC-TTTCTCAGGCAAAGGCAAA
13769165 TCTCT
1 TCTCT
13769170 CTTTCTAAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 5 0.19
24 22 0.81
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (23 bp):
TCTCTTTCTCAGGCAAAGGCAAA
Found at i:13773337 original size:32 final size:32
Alignment explanation
Indices: 13773299--13773387 Score: 90
Period size: 32 Copynumber: 2.8 Consensus size: 32
13773289 TTGAAATTTT
*
13773299 AGTTTGTTGGATTTTGAAATTATTGTGTCTTGA
1 AGTTTGTTGGATATTGAAATTATTGTGT-TTGA
** * * *
13773332 A-TTTGTTACATATTGAATTTATTATGTTTTA
1 AGTTTGTTGGATATTGAAATTATTGTGTTTGA
* *
13773363 AGGTTGTTGGATATTGAAATGATTG
1 AGTTTGTTGGATATTGAAATTATTG
13773388 ACAATGACAA
Statistics
Matches: 43, Mismatches: 12, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
31 4 0.09
32 38 0.88
33 1 0.02
ACGTcount: A:0.26, C:0.02, G:0.21, T:0.51
Consensus pattern (32 bp):
AGTTTGTTGGATATTGAAATTATTGTGTTTGA
Found at i:13777382 original size:13 final size:14
Alignment explanation
Indices: 13777361--13777425 Score: 55
Period size: 13 Copynumber: 4.7 Consensus size: 14
13777351 TTTAGCTATT
*
13777361 TTTATTTTTTTA-A
1 TTTAATTTTTTACA
13777374 TTTAA-TTTTTACA
1 TTTAATTTTTTACA
***
13777387 TTCTAATTTGACACA
1 TT-TAATTTTTTACA
13777402 TTCTAATTTTTTA-A
1 TT-TAATTTTTTACA
13777416 TTTAATTTTT
1 TTTAATTTTT
13777426 ATTTATATTA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
12 6 0.14
13 15 0.36
14 6 0.14
15 15 0.36
ACGTcount: A:0.28, C:0.08, G:0.02, T:0.63
Consensus pattern (14 bp):
TTTAATTTTTTACA
Found at i:13781489 original size:33 final size:33
Alignment explanation
Indices: 13781452--13781526 Score: 125
Period size: 33 Copynumber: 2.3 Consensus size: 33
13781442 CAAACATATG
13781452 AAGTAGTAATTAAATAATGCATGATATACAAAA
1 AAGTAGTAATTAAATAATGCATGATATACAAAA
* *
13781485 AAGTAATAATTAAATAATGCATGATATACAGAA
1 AAGTAGTAATTAAATAATGCATGATATACAAAA
13781518 AAG-AGTAAT
1 AAGTAGTAAT
13781527 ACAATATCAA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
32 5 0.13
33 34 0.87
ACGTcount: A:0.55, C:0.05, G:0.13, T:0.27
Consensus pattern (33 bp):
AAGTAGTAATTAAATAATGCATGATATACAAAA
Found at i:13781870 original size:19 final size:19
Alignment explanation
Indices: 13781811--13781874 Score: 55
Period size: 18 Copynumber: 3.5 Consensus size: 19
13781801 AAAAGAATTT
* *
13781811 ATAAAATAACACATAATAT
1 ATAAAATAATACATAATAA
**
13781830 A-AAAAT-AT-CATTTTAA
1 ATAAAATAATACATAATAA
13781846 AGTAAAATAATACATAATAA
1 A-TAAAATAATACATAATAA
13781866 AT-AAATAAT
1 ATAAAATAAT
13781875 TAATAATTTA
Statistics
Matches: 35, Mismatches: 6, Indels: 9
0.70 0.12 0.18
Matches are distributed among these distances:
16 6 0.17
17 1 0.03
18 17 0.49
19 4 0.11
20 7 0.20
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.30
Consensus pattern (19 bp):
ATAAAATAATACATAATAA
Found at i:13784259 original size:210 final size:210
Alignment explanation
Indices: 13783644--13784448 Score: 1362
Period size: 210 Copynumber: 3.8 Consensus size: 210
13783634 CTGCTTCTTT
* *
13783644 GATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTTCTTCATCGTAAACACGTGA
1 GATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
*
13783709 AAGCCAAATCAGCTATATCTTTGATCTGCTCCCCGTCGAGTACAGAGAGATAAGATCTGTCATCT
66 AAGCCAAATCAGCTATATCTTTGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCATCT
*
13783774 TGGATCTGCTTCAGCGTAAACATCTAGAGGTGAGATCTGCTATGTGTCTGCCTTCCATTC-GAGT
131 TGGATCTGCTTCAGCGTAAACATCTAGAGGTGAGATCTGCTATGTGTCTGCCTTCCA-TCAAAGT
13783838 GAAGATGCCAGACTTC
195 GAAGATGCCAGACTTC
13783854 GATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
1 GATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
* * *
13783919 AAGCCAAATCAGTTATATCTTTTAGATCTGCTCCCAGTTGAATACAGAGAGATAAGATCTGTCAT
66 AAGCCAAATCAGCTATATC-TTT-GATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCAT
* * * *
13783984 CTTGGATCTACTTCAGCGTAAACGTCTAAAGGTGAGATCTGCTATGTGCCTGCCTTCCATCAAAG
129 CTTGGATCTGCTTCAGCGTAAACATCTAGAGGTGAGATCTGCTATGTGTCTGCCTTCCATCAAAG
* *
13784049 TGAAGATGCCAGGCTTT
194 TGAAGATGCCAGACTTC
* * *
13784066 GATTTTTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTTATCGTAAACACATGA
1 GATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
* *
13784131 AAGCCAAATCAGCTATATCTTTGATCTGCTCCCTGTCGAGTACAGAGAGATAAGATCTGTCATCT
66 AAGCCAAATCAGCTATATCTTTGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCATCT
13784196 TGGATCTGCTTCAGCGTAAACATCTAGAGGTGAGATCTGCTATGTGTCTGCCTTCCATCAAAGTG
131 TGGATCTGCTTCAGCGTAAACATCTAGAGGTGAGATCTGCTATGTGTCTGCCTTCCATCAAAGTG
13784261 AAGATGCCAGACTTC
196 AAGATGCCAGACTTC
* *
13784276 GATTTGTTCTCTAACAATACAGAGACGACAAATTATCTTAGATTTGCTTCATCGTAAACACGTGA
1 GATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
*
13784341 AAGCCAAATCAGCTATATCTTTGATCTGCTCCCCGTCGAATACAAAGAGATAAGATCTGTCATCT
66 AAGCCAAATCAGCTATATCTTTGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCATCT
*
13784406 TGGATCTGCTTCAGCATAAACATCT-GAAGGTGAGATCTGCTAT
131 TGGATCTGCTTCAGCGTAAACATCTAG-AGGTGAGATCTGCTAT
13784449 ATTGCGGCCT
Statistics
Matches: 556, Mismatches: 35, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
209 1 0.00
210 357 0.64
211 8 0.01
212 190 0.34
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.30
Consensus pattern (210 bp):
GATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
AAGCCAAATCAGCTATATCTTTGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCATCT
TGGATCTGCTTCAGCGTAAACATCTAGAGGTGAGATCTGCTATGTGTCTGCCTTCCATCAAAGTG
AAGATGCCAGACTTC
Found at i:13790871 original size:28 final size:28
Alignment explanation
Indices: 13790833--13790889 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
13790823 TTTTCATTGA
*
13790833 TTTGTGCTTCCTTTAGTCAACAAGGCAT
1 TTTGTGCTTCCTTTAGTCAACAACGCAT
13790861 TTTGTGCTTCCTTTAGTCAACAACGCAT
1 TTTGTGCTTCCTTTAGTCAACAACGCAT
13790889 T
1 T
13790890 CCTGATGACG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.21, C:0.23, G:0.16, T:0.40
Consensus pattern (28 bp):
TTTGTGCTTCCTTTAGTCAACAACGCAT
Found at i:13792069 original size:19 final size:20
Alignment explanation
Indices: 13792045--13792092 Score: 62
Period size: 23 Copynumber: 2.3 Consensus size: 20
13792035 GATCAGTTGG
13792045 ACCTTT-GATTAATTAACAT
1 ACCTTTGGATTAATTAACAT
13792064 ACCTTTTTTGGATTAATTAACAT
1 ACC---TTTGGATTAATTAACAT
13792087 ACCTTT
1 ACCTTT
13792093 TTTTGACTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
19 3 0.12
20 3 0.12
22 3 0.12
23 16 0.64
ACGTcount: A:0.31, C:0.17, G:0.06, T:0.46
Consensus pattern (20 bp):
ACCTTTGGATTAATTAACAT
Found at i:13792077 original size:23 final size:23
Alignment explanation
Indices: 13792051--13792095 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
13792041 TTGGACCTTT
13792051 GATTAATTAACATACCTTTTTTG
1 GATTAATTAACATACCTTTTTTG
13792074 GATTAATTAACATACCTTTTTT
1 GATTAATTAACATACCTTTTTT
13792096 TGACTGACCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.31, C:0.13, G:0.07, T:0.49
Consensus pattern (23 bp):
GATTAATTAACATACCTTTTTTG
Found at i:13792163 original size:13 final size:13
Alignment explanation
Indices: 13792132--13792165 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
13792122 TTTGAATTTC
13792132 AATTT-ATTTAAT
1 AATTTAATTTAAT
13792144 AATTTTAATTTAAT
1 AA-TTTAATTTAAT
13792158 AATTTAAT
1 AATTTAAT
13792166 CCAATGAGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 2 0.10
13 9 0.45
14 9 0.45
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
AATTTAATTTAAT
Found at i:13794246 original size:23 final size:24
Alignment explanation
Indices: 13794208--13794252 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
13794198 TTTGCTCTTC
*
13794208 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
13794232 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
13794253 ACCTTACATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:13794545 original size:55 final size:54
Alignment explanation
Indices: 13794342--13794563 Score: 201
Period size: 55 Copynumber: 4.2 Consensus size: 54
13794332 CATGAATTTT
* * * *
13794342 CATGGTCTTACGTGGTATCCTT---TT-GAAACTTACC-ATTTCCATGTCTCGA
1 CATGGTCTTACATGGTATCCTTGCCTTAGAAACTTACCAATTGCCATGCCTTGA
* * *
13794391 CATGGTCTTACATGGTATCCTTGCCTTATG-AACTCACCAA-TGCGATGCCTTGG
1 CATGGTCTTACATGGTATCCTTGCCTTA-GAAACTTACCAATTGCCATGCCTTGA
* * * * **
13794444 CATGGTCTTACATGG-AACCTTTGCCTTATAGTAACTTA-TAAATGCCATTTCTTGA
1 CATGGTCTTACATGGTATCC-TTGCC-T-TAGAAACTTACCAATTGCCATGCCTTGA
* *
13794499 CATGGTCTTACATGGTATCCTTGCCTTAGAAACCTTACCAATTGCCACGCCTTGT
1 CATGGTCTTACATGGTATCCTTGCCTTAGAAA-CTTACCAATTGCCATGCCTTGA
13794554 CATGGTCTTA
1 CATGGTCTTA
13794564 TTAGGTATCC
Statistics
Matches: 137, Mismatches: 22, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
49 21 0.15
52 5 0.04
53 40 0.29
54 11 0.08
55 57 0.42
56 3 0.02
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
CATGGTCTTACATGGTATCCTTGCCTTAGAAACTTACCAATTGCCATGCCTTGA
Found at i:13805731 original size:13 final size:13
Alignment explanation
Indices: 13805713--13805737 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13805703 GGGAGGCAAC
13805713 ACGGCCGTGTGAT
1 ACGGCCGTGTGAT
13805726 ACGGCCGTGTGA
1 ACGGCCGTGTGA
13805738 AAATATAGCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.40, T:0.20
Consensus pattern (13 bp):
ACGGCCGTGTGAT
Found at i:13811304 original size:100 final size:100
Alignment explanation
Indices: 13811131--13811316 Score: 309
Period size: 100 Copynumber: 1.9 Consensus size: 100
13811121 AGGTCACATT
* * **
13811131 TGTAGTACTAACTACAGGCTACTACGTGTACTGGATAATTGGTCGCATGTGTAGTACTAAGTGCA
1 TGTAGTACTAACTACAAGCTACTACGTGTACCGGATAATTCATCGCATGTGTAGTACTAAGTGCA
*
13811196 GGCTACTATGCGTACCCGATAACTTCAATCACGTG
66 GGCTACTATGCGTACCAGATAACTTCAATCACGTG
* *
13811231 TGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTCATCGCATGTGTAGTACTAAGTGCA
1 TGTAGTACTAACTACAAGCTACTACGTGTACCGGATAATTCATCGCATGTGTAGTACTAAGTGCA
13811296 GGCTACTATGCGTACCAGATA
66 GGCTACTATGCGTACCAGATA
13811317 GCTTTGGCTA
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 79 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (100 bp):
TGTAGTACTAACTACAAGCTACTACGTGTACCGGATAATTCATCGCATGTGTAGTACTAAGTGCA
GGCTACTATGCGTACCAGATAACTTCAATCACGTG
Found at i:13811311 original size:49 final size:49
Alignment explanation
Indices: 13811131--13811316 Score: 228
Period size: 49 Copynumber: 3.8 Consensus size: 49
13811121 AGGTCACATT
* * * * **
13811131 TGTAGTACTAACTACAGGCTACTACGTGTACTGGATAATTGGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATTCATCGCATG
* * * *
13811180 TGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCAATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAA-TTC-ATCGCATG
* *
13811231 TGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTCATCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATTCATCGCATG
* *
13811280 TGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATA
13811317 GCTTTGGCTA
Statistics
Matches: 115, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 71 0.62
50 5 0.04
51 39 0.34
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (49 bp):
TGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATTCATCGCATG
Found at i:13820570 original size:37 final size:37
Alignment explanation
Indices: 13820520--13820708 Score: 270
Period size: 37 Copynumber: 5.1 Consensus size: 37
13820510 ACCTTTAGCT
* * *
13820520 CGGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
13820557 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* * *
13820594 TGGACATACTCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
*
13820631 CGGACAAAATCTCCACACGTAGTCATCAGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* * * * *
13820668 CGAACATACTCTCCACATGTAGTCATCGGGTCTCACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
13820705 CGGA
1 CGGA
13820709 ATATATTTCC
Statistics
Matches: 135, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 135 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:13820923 original size:47 final size:47
Alignment explanation
Indices: 13820871--13821150 Score: 407
Period size: 47 Copynumber: 6.0 Consensus size: 47
13820861 TTTCACACTA
* * * * *
13820871 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATCG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
13820918 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * *
13820965 GCCATTCTGCCTCATCACATATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
13821012 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
13821059 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* **
13821106 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
13821151 AAAATCCTAA
Statistics
Matches: 207, Mismatches: 26, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 207 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.31
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:13821070 original size:141 final size:140
Alignment explanation
Indices: 13820863--13821151 Score: 488
Period size: 141 Copynumber: 2.0 Consensus size: 140
13820853 CCTACATATT
*
13820863 TCACACTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATCGGCCATTCGGC
1 TCACA-TAGCCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATCGGCCATTCGGC
* * *
13820928 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCTGCCTCATCACATATATGCAT
65 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTCATCACATATATACAC
*
13820993 GTTCACATTCA
130 ATTCACATTCA
* *
13821004 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
1 TCACATA-GCCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATCGGCCATTCGGC
*
13821069 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
65 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTCATCACATATATACAC
13821134 ATTCACATTCA
130 ATTCACATTCA
13821145 TCACATA
1 TCACATA
13821152 AAATCCTAAA
Statistics
Matches: 139, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
140 2 0.01
141 137 0.99
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.31
Consensus pattern (140 bp):
TCACATAGCCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATCGGCCATTCGGCC
TTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTCATCACATATATACACA
TTCACATTCA
Found at i:13829398 original size:101 final size:101
Alignment explanation
Indices: 13828469--13829371 Score: 1666
Period size: 101 Copynumber: 9.0 Consensus size: 101
13828459 GTGAGGTCAT
* * * * ** * * *
13828469 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGGTAATT-GGTCGCATGTCTAGTACTAAG
1 GTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
13828533 TGCAGGCTACTATGCGTACCAGATAACCTTGATCAC
66 TGCAGGCTACTATGCGTACCAGATAACCTTGATCAC
13828569 GTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
* *
13828634 TGCAGGCTACTATGCGTACTAGATAGCCTTG-TCCAC
66 TGCAGGCTACTATGCGTACCAGATAACCTTGAT-CAC
13828670 GTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
13828735 TGCAGGCTACTATGCGTACCAGATAACCTTGATCAC
66 TGCAGGCTACTATGCGTACCAGATAACCTTGATCAC
13828771 GTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
13828836 TGCAGGCTACTATGCGTACCAGATAACCTTGATCAC
66 TGCAGGCTACTATGCGTACCAGATAACCTTGATCAC
13828872 GTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
13828937 TGCAGGCTACTATGCGTACCAGATAACCTTGATCAC
66 TGCAGGCTACTATGCGTACCAGATAACCTTGATCAC
13828973 GTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
13829038 TGCAGGCTACTATGCGTACCAGATAACCTTGATCAC
66 TGCAGGCTACTATGCGTACCAGATAACCTTGATCAC
13829074 GTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
13829139 TGCAGGCTACTATGCGTACCAGATAACCTTGATCAC
66 TGCAGGCTACTATGCGTACCAGATAACCTTGATCAC
13829175 GTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
13829240 TGCAGGCTACTATGCGTACCAGATAACCTTGATCAC
66 TGCAGGCTACTATGCGTACCAGATAACCTTGATCAC
13829276 GTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
* *
13829341 TGCAGGCTACTATGCGTACTAGATAGCCTTG
66 TGCAGGCTACTATGCGTACCAGATAACCTTG
13829372 TCTACAAGTG
Statistics
Matches: 785, Mismatches: 15, Indels: 5
0.98 0.02 0.01
Matches are distributed among these distances:
100 38 0.05
101 746 0.95
102 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (101 bp):
GTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
TGCAGGCTACTATGCGTACCAGATAACCTTGATCAC
Found at i:13832471 original size:15 final size:15
Alignment explanation
Indices: 13832453--13832485 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
13832443 TGGATTCTCG
13832453 TATCATGGATTTCTT
1 TATCATGGATTTCTT
*
13832468 TATCTTGGATTTCTT
1 TATCATGGATTTCTT
13832483 TAT
1 TAT
13832486 TCTGGGCTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.12, T:0.58
Consensus pattern (15 bp):
TATCATGGATTTCTT
Found at i:13835026 original size:40 final size:40
Alignment explanation
Indices: 13834940--13835118 Score: 267
Period size: 40 Copynumber: 4.5 Consensus size: 40
13834930 ACTACTTGCT
13834940 CAAATGCCTTCGGGAC-TAGCCCGGTTATAGT-ACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
13834978 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
13835018 CAAATGCCTTCAGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
13835058 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
13835097 CAAATGCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
13835119 TTGTTATCAT
Statistics
Matches: 129, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
38 17 0.13
39 48 0.37
40 64 0.50
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:13835076 original size:79 final size:79
Alignment explanation
Indices: 13834940--13835118 Score: 274
Period size: 79 Copynumber: 2.3 Consensus size: 79
13834930 ACTACTTGCT
*
13834940 CAAATGCCTTCGGGAC-TAGCCCGGTTATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
* *
13835003 TTATAGTAACTCGCA
66 AT-TAGTAACTAGCA
*
13835018 CAAATGCCTTCAGGACTTAGCCCGGATATAGTAGCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTA-CTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
13835082 AATTAGTCACTAGCA
65 AATTAGTAACTAGCA
13835097 CAAATGCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
13835119 TTGTTATCAT
Statistics
Matches: 92, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
78 15 0.16
79 56 0.61
80 21 0.23
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTAGCA
Found at i:13839385 original size:99 final size:99
Alignment explanation
Indices: 13838454--13839371 Score: 1610
Period size: 99 Copynumber: 9.3 Consensus size: 99
13838444 TGAGGTCACG
* * * * * * *
13838454 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCGCATGTCTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATAGTTAGGTCACGTGTGTAGTACTAAGT
* * * * * * *
13838518 GCAGGCTACTATGCGTACCCGATAACTTCGATCACG
66 GCAGACTACTACGTGTACCAGATAA-TT-GGTCGCA
13838554 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATAGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATAGTTAGGTCACGTGTGTAGTACTAAGT
13838619 GCAGACTACTACGTGTACCAGATAATTGGTCGCA
66 GCAGACTACTACGTGTACCAGATAATTGGTCGCA
***
13838653 TGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CTAGATAGCCTT--GTCACGTGTGTAGTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTATC-AGATAG--TTAGGTCACGTGTGTAGTACTA
13838715 AGTGCAGACTACTACGTGTACCAGATAATTGGTCGCA
63 AGTGCAGACTACTACGTGTACCAGATAATTGGTCGCA
13838752 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATAGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATAGTTAGGTCACGTGTGTAGTACTAAGT
13838817 GCAGACTACTACGTGTACCAGATAATTGGTCGCA
66 GCAGACTACTACGTGTACCAGATAATTGGTCGCA
13838851 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATAGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATAGTTAGGTCACGTGTGTAGTACTAAGT
13838916 GCAGACTACTACGTGTACCAGATAATTGGTCGCA
66 GCAGACTACTACGTGTACCAGATAATTGGTCGCA
13838950 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATAGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATAGTTAGGTCACGTGTGTAGTACTAAGT
13839015 GCAGACTACTACGTGTACCAGATAATTGGTCGCA
66 GCAGACTACTACGTGTACCAGATAATTGGTCGCA
13839049 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATAGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATAGTTAGGTCACGTGTGTAGTACTAAGT
13839114 GCAGACTACTACGTGTACCAGATAATTGGTCGCA
66 GCAGACTACTACGTGTACCAGATAATTGGTCGCA
13839148 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATAGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATAGTTAGGTCACGTGTGTAGTACTAAGT
13839213 GCAGACTACTACGTGTACCAGATAATTGGTCGCA
66 GCAGACTACTACGTGTACCAGATAATTGGTCGCA
13839247 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATAGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATAGTTAGGTCACGTGTGTAGTACTAAGT
13839312 GCAGACTACTACGTGTACCAGATAATTGGTCGCA
66 GCAGACTACTACGTGTACCAGATAATTGGTCGCA
13839346 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
13839372 TGCGTACTAG
Statistics
Matches: 791, Mismatches: 20, Indels: 15
0.96 0.02 0.02
Matches are distributed among these distances:
97 2 0.00
98 1 0.00
99 705 0.89
100 41 0.05
101 42 0.05
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (99 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATAGTTAGGTCACGTGTGTAGTACTAAGT
GCAGACTACTACGTGTACCAGATAATTGGTCGCA
Found at i:13869336 original size:13 final size:13
Alignment explanation
Indices: 13869318--13869342 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13869308 TTCAAACTAC
13869318 TTTTTATTTTTTA
1 TTTTTATTTTTTA
13869331 TTTTTATTTTTT
1 TTTTTATTTTTT
13869343 TAGCAGATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTATTTTTTA
Found at i:13875088 original size:28 final size:28
Alignment explanation
Indices: 13875048--13875117 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
13875038 ATAGTAAGTC
*
13875048 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
13875076 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
13875104 CGCACACTTAGTGC
1 CGCACACTTAGTGC
13875118 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:13893379 original size:33 final size:33
Alignment explanation
Indices: 13893337--13893402 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
13893327 ATGATTAAAA
*
13893337 TATATTAAACTAAATGCAATGATCCTTGATGTG
1 TATATTAAACTAAATGCAATGATCCCTGATGTG
13893370 TATATTAAACTAAATGCAATGATCCCTGATGTG
1 TATATTAAACTAAATGCAATGATCCCTGATGTG
13893403 ATTTACCCTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (33 bp):
TATATTAAACTAAATGCAATGATCCCTGATGTG
Found at i:13901243 original size:43 final size:43
Alignment explanation
Indices: 13901088--13901244 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 43
13901078 TGTGTTATCG
* * * * *
13901088 TGTAAGACCACGTTTGGAACGTTGGTATCGACT-TATGATTTACA
1 TGTAAGACCACGTCTGGGATGTTGGCATCGA-TATTTGA-TTACA
* * *
13901132 TGTAAGACCACGTCTGGGATGTTGGCATC-TTATTTGGTTTCA
1 TGTAAGACCACGTCTGGGATGTTGGCATCGATATTTGATTACA
* * *
13901174 TGTAAGACC-CTGCCTAGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGA-TGTTGGCATCGATATTTGATTACA
13901217 TGTAAGACCACGTCTGGGATGTTGGCAT
1 TGTAAGACCACGTCTGGGATGTTGGCAT
13901245 TGTATGAGCT
Statistics
Matches: 90, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
41 1 0.01
42 28 0.31
43 35 0.39
44 26 0.29
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGATGTTGGCATCGATATTTGATTACA
Found at i:13901586 original size:32 final size:32
Alignment explanation
Indices: 13901550--13901614 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
13901540 GATAAGTTTA
*
13901550 TTTGTATATGGCTTACTAAGCTTTTGAAAGCT
1 TTTGTATATGGCGTACTAAGCTTTTGAAAGCT
13901582 TTTGTATATGGCGTACTAAGCTTTTGAAAGCT
1 TTTGTATATGGCGTACTAAGCTTTTGAAAGCT
13901614 T
1 T
13901615 ATTTTTTTTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.43
Consensus pattern (32 bp):
TTTGTATATGGCGTACTAAGCTTTTGAAAGCT
Found at i:13902478 original size:15 final size:15
Alignment explanation
Indices: 13902458--13902488 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
13902448 ATCAAGCAAG
13902458 TTCTAGAATAACAAT
1 TTCTAGAATAACAAT
13902473 TTCTAGAATAACAAT
1 TTCTAGAATAACAAT
13902488 T
1 T
13902489 CGATACTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.13, G:0.06, T:0.35
Consensus pattern (15 bp):
TTCTAGAATAACAAT
Found at i:13904269 original size:55 final size:55
Alignment explanation
Indices: 13904151--13904271 Score: 154
Period size: 55 Copynumber: 2.2 Consensus size: 55
13904141 ATGTAGGCCT
* *
13904151 ACGCCCGTGTTAATCTGACAGGTTTGCCCACGGTTGCTCGGCACGGGTGTGTCGC
1 ACGCCCGTGTTAATCTGACAGGTTTGCCCACGGTTGCTCGGCACGGGCGTGTCAC
* * * * *
13904206 ACGTCCGTGTTAATTTGTCAGGTTTGGCCACGGTTTC-CAGGCACGGGCGTGTCAC
1 ACGCCCGTGTTAATCTGACAGGTTTGCCCACGGTTGCTC-GGCACGGGCGTGTCAC
*
13904261 ATGCCCGTGTT
1 ACGCCCGTGTT
13904272 GTTTTGGCAA
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 1 0.02
55 55 0.98
ACGTcount: A:0.13, C:0.27, G:0.31, T:0.28
Consensus pattern (55 bp):
ACGCCCGTGTTAATCTGACAGGTTTGCCCACGGTTGCTCGGCACGGGCGTGTCAC
Found at i:13904645 original size:53 final size:53
Alignment explanation
Indices: 13904574--13904677 Score: 181
Period size: 53 Copynumber: 2.0 Consensus size: 53
13904564 ATACTCCTCA
*
13904574 TTCCTTCTATGAATCTCATCAAAATAAGGTTTTAGGCGGGTATTGTTTACCTT
1 TTCCTGCTATGAATCTCATCAAAATAAGGTTTTAGGCGGGTATTGTTTACCTT
* *
13904627 TTCCTGCTATGAATCTCATCAAAATAAGGTTTTAGGTGGGTATTTTTTACC
1 TTCCTGCTATGAATCTCATCAAAATAAGGTTTTAGGCGGGTATTGTTTACC
13904678 CTAAAAGTGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.25, C:0.16, G:0.17, T:0.41
Consensus pattern (53 bp):
TTCCTGCTATGAATCTCATCAAAATAAGGTTTTAGGCGGGTATTGTTTACCTT
Found at i:13911715 original size:44 final size:43
Alignment explanation
Indices: 13911624--13911744 Score: 188
Period size: 44 Copynumber: 2.8 Consensus size: 43
13911614 ATTTATTTAA
13911624 AAAAGCACCGCTAAAAGTCATGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCACCGCTAAAAGTCATGGCTTTTAGCGGCGTTTGTGGG
* * * *
13911667 AAAAGCGCTGCTAAAAGTAATGGCTTTTTAGCGGCGTTTGTGGT
1 AAAAGCACCGCTAAAAGTCATGGC-TTTTAGCGGCGTTTGTGGG
*
13911711 AAAAGCACCGCTAAAAGTCTTGGCTTTTAGCGGC
1 AAAAGCACCGCTAAAAGTCATGGCTTTTAGCGGC
13911745 ACTTTTTTTG
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
43 31 0.45
44 38 0.55
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.27
Consensus pattern (43 bp):
AAAAGCACCGCTAAAAGTCATGGCTTTTAGCGGCGTTTGTGGG
Found at i:13911781 original size:87 final size:86
Alignment explanation
Indices: 13911624--13911788 Score: 206
Period size: 87 Copynumber: 1.9 Consensus size: 86
13911614 ATTTATTTAA
* * *
13911624 AAAAGCACCGCTAAAAGTCATGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAAGTAATG
1 AAAAGCACCGCTAAAAGTCATGGCTTTTAGCGGCCTTTGTGGGAAAAGCGCCGCTAAAAGCAATG
*
13911689 GCTTTTTAGCGGCGTTTGTGGT
66 AC-TTTTAGCGGCGTTTGTGGT
* * ** * *
13911711 AAAAGCACCGCTAAAAGTCTTGGCTTTTAGCGGCACTTTTTTTGCAAA-CGCCGCTAAAAGCCAT
1 AAAAGCACCGCTAAAAGTCATGGCTTTTAGCGGC-CTTTGTGGGAAAAGCGCCGCTAAAAGCAAT
*
13911775 TACTTTTAGCGGCG
65 GACTTTTAGCGGCG
13911789 CTTTTTCCAC
Statistics
Matches: 66, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
86 11 0.17
87 47 0.71
88 8 0.12
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.28
Consensus pattern (86 bp):
AAAAGCACCGCTAAAAGTCATGGCTTTTAGCGGCCTTTGTGGGAAAAGCGCCGCTAAAAGCAATG
ACTTTTAGCGGCGTTTGTGGT
Found at i:13912191 original size:21 final size:20
Alignment explanation
Indices: 13912167--13912214 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
13912157 TTTTGCTCTG
13912167 CTCTGCTGCCATCGCT-GCTGC
1 CTCTGCT-CCATCGCTCG-TGC
*
13912188 CTCTGCCTCCCTCGCTCGTGC
1 CTCTG-CTCCATCGCTCGTGC
13912209 CTCTGC
1 CTCTGC
13912215 CTCTCTCGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 1 0.04
21 20 0.83
22 3 0.12
ACGTcount: A:0.02, C:0.48, G:0.21, T:0.29
Consensus pattern (20 bp):
CTCTGCTCCATCGCTCGTGC
Found at i:13912215 original size:21 final size:21
Alignment explanation
Indices: 13912178--13912274 Score: 90
Period size: 21 Copynumber: 4.6 Consensus size: 21
13912168 TCTGCTGCCA
*
13912178 TCGCTGCTGCCTCTGCCTCCC
1 TCGCTGTTGCCTCTGCCTCCC
*
13912199 TCGCTCG-TGCCTCTGCCTCTC
1 TCGCT-GTTGCCTCTGCCTCCC
* *
13912220 TCGCTGTTGTCGCTGCCTCCC
1 TCGCTGTTGCCTCTGCCTCCC
* *
13912241 TCGCTGCTG-CTGCTACCTCCC
1 TCGCTGTTGCCT-CTGCCTCCC
* *
13912262 TCTCTGCTGCCTC
1 TCGCTGTTGCCTC
13912275 CGCTCTAAGT
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
20 2 0.03
21 59 0.92
22 3 0.05
ACGTcount: A:0.01, C:0.47, G:0.20, T:0.32
Consensus pattern (21 bp):
TCGCTGTTGCCTCTGCCTCCC
Found at i:13912714 original size:13 final size:14
Alignment explanation
Indices: 13912689--13912717 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
13912679 TGATGAATTG
13912689 AATTAAACAATTAT
1 AATTAAACAATTAT
13912703 AATTAAAC-ATTAT
1 AATTAAACAATTAT
13912716 AA
1 AA
13912718 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:13912906 original size:17 final size:16
Alignment explanation
Indices: 13912884--13912922 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
13912874 AAAATATTAT
13912884 TTAATAGTAGAAAGTAA
1 TTAATAGTAGAAAG-AA
* *
13912901 TTAATATTTGAAAGAA
1 TTAATAGTAGAAAGAA
13912917 TTAATA
1 TTAATA
13912923 AATTCATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.36
Consensus pattern (16 bp):
TTAATAGTAGAAAGAA
Found at i:13916557 original size:36 final size:36
Alignment explanation
Indices: 13916506--13916581 Score: 116
Period size: 36 Copynumber: 2.1 Consensus size: 36
13916496 AAGTAAGCTT
* *
13916506 TGTAAGTTATCTAAGTTATGTTATGATATACATTTA
1 TGTAAGGTATCTAAGTTATGATATGATATACATTTA
* *
13916542 TGTAAGGTATGTAAGTTATGATATGATATATATTTA
1 TGTAAGGTATCTAAGTTATGATATGATATACATTTA
13916578 TGTA
1 TGTA
13916582 TTATGTAAGT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.34, C:0.03, G:0.17, T:0.46
Consensus pattern (36 bp):
TGTAAGGTATCTAAGTTATGATATGATATACATTTA
Found at i:13916598 original size:43 final size:43
Alignment explanation
Indices: 13916539--13916715 Score: 219
Period size: 43 Copynumber: 3.9 Consensus size: 43
13916529 TGATATACAT
* *
13916539 TTATGTAAGGTATGTAAGTTATGATATGATATATATTTATGTA
1 TTATGTAAGTTGTGTAAGTTATGATATGATATATATTTATGTA
13916582 TTATGTAAGTTGTGTAAGTTATGATATGATATATATTTATGTA
1 TTATGTAAGTTGTGTAAGTTATGATATGATATATATTTATGTA
* *
13916625 TTTTGTAAGGTATATAAGTTATGTAAGTTATTATATGATATATATTTATGTA
1 TTATGTAA-G--T-T--G---TGTAAGTTATGATATGATATATATTTATGTA
* *
13916677 TTATGTAAGTTTTGTAAGTTATTATATGATATATATTTA
1 TTATGTAAGTTGTGTAAGTTATGATATGATATATATTTA
13916716 ACATTAAGAT
Statistics
Matches: 119, Mismatches: 6, Indels: 18
0.83 0.04 0.13
Matches are distributed among these distances:
43 75 0.63
44 1 0.01
46 1 0.01
47 1 0.01
48 1 0.01
49 2 0.02
51 1 0.01
52 37 0.31
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (43 bp):
TTATGTAAGTTGTGTAAGTTATGATATGATATATATTTATGTA
Found at i:13916681 original size:95 final size:95
Alignment explanation
Indices: 13916544--13916715 Score: 308
Period size: 95 Copynumber: 1.8 Consensus size: 95
13916534 TACATTTATG
13916544 TAAGGTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAT
1 TAAGGTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAT
13916609 GATATATATTTATGTATTTTGTAAGGTATA
66 GATATATATTTATGTATTTTGTAAGGTATA
* * * *
13916639 TAAGTTATGTAAGTTATTATATGATATATATTTATGTATTATGTAAGTTTTGTAAGTTATTATAT
1 TAAGGTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAT
13916704 GATATATATTTA
66 GATATATATTTA
13916716 ACATTAAGAT
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
95 73 1.00
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.49
Consensus pattern (95 bp):
TAAGGTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAT
GATATATATTTATGTATTTTGTAAGGTATA
Found at i:13916695 original size:52 final size:52
Alignment explanation
Indices: 13916583--13916698 Score: 178
Period size: 52 Copynumber: 2.2 Consensus size: 52
13916573 ATTTATGTAT
* *
13916583 TATGTAAGTTGTGTAAGTTATGATATGATATATATTTATGTATTTTGTAAGG
1 TATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGG
* * *
13916635 TATATAAGTTATGTAAGTTATTATATGATATATATTTATGTATTATGTAAGT
1 TATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGG
*
13916687 TTTGTAAGTTAT
1 TATGTAAGTTAT
13916699 TATATGATAT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 57 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (52 bp):
TATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGG
Found at i:13920025 original size:19 final size:20
Alignment explanation
Indices: 13919991--13920029 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
13919981 AAGAAATTTG
*
13919991 TCTAATATGATTAAAAATAT
1 TCTAAAATGATTAAAAATAT
13920011 TCTAAAATG-TTAAAAATAT
1 TCTAAAATGATTAAAAATAT
13920030 ATATGTTCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.38
Consensus pattern (20 bp):
TCTAAAATGATTAAAAATAT
Found at i:13920141 original size:24 final size:24
Alignment explanation
Indices: 13920107--13920291 Score: 125
Period size: 24 Copynumber: 8.0 Consensus size: 24
13920097 ATACTATCTC
*
13920107 TATATGACTATATCCATAGCCAGA
1 TATATGTCTATATCCATAGCCAGA
*
13920131 TATATGTCTATATCCATAGCCAGG
1 TATATGTCTATATCCATAGCCAGA
* * ** * * *
13920155 TATCTTTAAAGATAC-TATCTC---
1 TATATGTCTATATCCATAGC-CAGA
*
13920176 TATATGACTATATCCATAGCCAGA
1 TATATGTCTATATCCATAGCCAGA
*
13920200 TATATGTCTATATCCATAGCCAGG
1 TATATGTCTATATCCATAGCCAGA
* * ** * * *
13920224 TATCTTTAAAGATAC-TATCTC---
1 TATATGTCTATATCCATAGC-CAGA
*
13920245 TATATGACTATATCCATAGCCAGA
1 TATATGTCTATATCCATAGCCAGA
13920269 TATATGTCTATATCCATAGCCAG
1 TATATGTCTATATCCATAGCCAG
13920292 GTATCTTTAA
Statistics
Matches: 116, Mismatches: 35, Indels: 20
0.68 0.20 0.12
Matches are distributed among these distances:
21 18 0.16
22 6 0.05
23 6 0.05
24 86 0.74
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.34
Consensus pattern (24 bp):
TATATGTCTATATCCATAGCCAGA
Found at i:13920156 original size:69 final size:69
Alignment explanation
Indices: 13920083--13920317 Score: 470
Period size: 69 Copynumber: 3.4 Consensus size: 69
13920073 TATGTATTTT
13920083 AGGTATCTTTAAAGATACTATCTCTATATGACTATATCCATAGCCAGATATATGTCTATATCCAT
1 AGGTATCTTTAAAGATACTATCTCTATATGACTATATCCATAGCCAGATATATGTCTATATCCAT
13920148 AGCC
66 AGCC
13920152 AGGTATCTTTAAAGATACTATCTCTATATGACTATATCCATAGCCAGATATATGTCTATATCCAT
1 AGGTATCTTTAAAGATACTATCTCTATATGACTATATCCATAGCCAGATATATGTCTATATCCAT
13920217 AGCC
66 AGCC
13920221 AGGTATCTTTAAAGATACTATCTCTATATGACTATATCCATAGCCAGATATATGTCTATATCCAT
1 AGGTATCTTTAAAGATACTATCTCTATATGACTATATCCATAGCCAGATATATGTCTATATCCAT
13920286 AGCC
66 AGCC
13920290 AGGTATCTTTAAAGATACTATCTCTATA
1 AGGTATCTTTAAAGATACTATCTCTATA
13920318 CTATCTTTAA
Statistics
Matches: 166, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 166 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.35
Consensus pattern (69 bp):
AGGTATCTTTAAAGATACTATCTCTATATGACTATATCCATAGCCAGATATATGTCTATATCCAT
AGCC
Found at i:13921472 original size:18 final size:19
Alignment explanation
Indices: 13921438--13921474 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
13921428 CTTTGGATGC
*
13921438 TTAGGGATTTGGGGAAATT
1 TTAGGGATTTAGGGAAATT
13921457 TTAGGGA-TTAGGGAAATT
1 TTAGGGATTTAGGGAAATT
13921475 GGGGGAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.30, C:0.00, G:0.35, T:0.35
Consensus pattern (19 bp):
TTAGGGATTTAGGGAAATT
Found at i:13921876 original size:14 final size:14
Alignment explanation
Indices: 13921841--13921877 Score: 67
Period size: 13 Copynumber: 2.7 Consensus size: 14
13921831 TATTATCTCT
13921841 TAAATAATTTAATC
1 TAAATAATTTAATC
13921855 TAAA-AATTTAATC
1 TAAATAATTTAATC
13921868 TAAATAATTT
1 TAAATAATTT
13921878 CATTTTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.43
Consensus pattern (14 bp):
TAAATAATTTAATC
Found at i:13922166 original size:14 final size:14
Alignment explanation
Indices: 13922128--13922206 Score: 54
Period size: 14 Copynumber: 5.6 Consensus size: 14
13922118 TTTATTAACC
*
13922128 CTAAACCCCAAACA
1 CTAAACCCTAAACA
* **
13922142 CTATATTCTAAACA
1 CTAAACCCTAAACA
13922156 CTAAACCCTAAA-A
1 CTAAACCCTAAACA
* *
13922169 CTATAAACCT-TACA
1 CTA-AACCCTAAACA
* *
13922183 CATAAACTCTAAACC
1 C-TAAACCCTAAACA
13922198 CTAAACCCT
1 CTAAACCCT
13922207 TAAGCCGTAA
Statistics
Matches: 47, Mismatches: 14, Indels: 8
0.68 0.20 0.12
Matches are distributed among these distances:
13 5 0.11
14 37 0.79
15 5 0.11
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.22
Consensus pattern (14 bp):
CTAAACCCTAAACA
Found at i:13923391 original size:11 final size:12
Alignment explanation
Indices: 13923364--13923393 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
13923354 GCTTTTATAA
13923364 AAAAACGCCGCT
1 AAAAACGCCGCT
*
13923376 AAAAATGCCGCT
1 AAAAACGCCGCT
13923388 AAAAAC
1 AAAAAC
13923394 CTATTTTGCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.27, G:0.13, T:0.10
Consensus pattern (12 bp):
AAAAACGCCGCT
Found at i:13926334 original size:17 final size:19
Alignment explanation
Indices: 13926292--13926335 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
13926282 ACGAAATTTT
*
13926292 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
13926311 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
13926329 AA-TATTA
1 AATTATTA
13926336 CTGCATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:13928674 original size:19 final size:20
Alignment explanation
Indices: 13928629--13928674 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
13928619 GCTGTTTTGT
*
13928629 TATGGGCCAACTGTATTGAA
1 TATGGCCCAACTGTATTGAA
*
13928649 -ATAGGCCCAACTGTGTT-AA
1 TAT-GGCCCAACTGTATTGAA
13928668 TATGGCC
1 TATGGCC
13928675 AAGGCCCAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (20 bp):
TATGGCCCAACTGTATTGAA
Found at i:13928743 original size:60 final size:59
Alignment explanation
Indices: 13928667--13928803 Score: 161
Period size: 60 Copynumber: 2.3 Consensus size: 59
13928657 AACTGTGTTA
* * *
13928667 ATATGGCCAAGGCCCAATATA-TCTCGACT-TGTAATAGGGCTACGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GA-TATGTAA-AGGGCTACGGCCCAGATTAATACTG
* * *
13928727 ATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGATA-TGTAAAGGGCTACGGCCCAGATTAATACTG
13928787 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
13928804 GTTAACACTG
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
59 1 0.01
60 51 0.76
61 15 0.22
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATACTCTGATATGTAAAGGGCTACGGCCCAGATTAATACTG
Found at i:13930695 original size:132 final size:130
Alignment explanation
Indices: 13930450--13930714 Score: 334
Period size: 132 Copynumber: 2.0 Consensus size: 130
13930440 TAATTATTCA
* * *
13930450 TTTAAAAATTCTTTAAAACGAAGGCGATGCCCGATATTTGACAATTCGCGAAACCGTGCCCTATC
1 TTTAAAAATTATTTAAAACGAAGGCAACGCCCGATATTTGACAATTCGCGAAACCGTGCCCTATC
* * *
13930515 GTGCTGGGTTGCAATTTCTCGTTTGCTCTAAATAATCGAATGAACCTTTTGGAATTTCATTCATG
66 GTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATGAACC-TTTAGAATTTCACTCATG
13930580 TC
130 -C
* * * * * * * *
13930582 TTTAAAAATTATTTAAAATGAAGGCAACGCCCTATGTTTGGCAATTCGGGGAATCGTGCCTTATC
1 TTTAAAAATTATTTAAAACGAAGGCAACGCCCGATATTTGACAATTCGCGAAACCGTGCCCTATC
* * * *
13930647 GTGCTGGGTTGCAATTTCTTGTTTGTTCAAAATAATCG-ATTATTCCTTTAGAATTTCACTCATG
66 GTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATGA-ACCTTTAGAATTTCACTCATG
13930711 C
130 C
13930712 TTT
1 TTT
13930715 CTAAATTCTA
Statistics
Matches: 114, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
130 4 0.04
131 19 0.17
132 91 0.80
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (130 bp):
TTTAAAAATTATTTAAAACGAAGGCAACGCCCGATATTTGACAATTCGCGAAACCGTGCCCTATC
GTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATGAACCTTTAGAATTTCACTCATGC
Found at i:13931991 original size:194 final size:194
Alignment explanation
Indices: 13931662--13932049 Score: 776
Period size: 194 Copynumber: 2.0 Consensus size: 194
13931652 AAATTTTATC
13931662 TTATAACCATTTTTGTACAAATTATAATGATTTTATAAAACAGAACAGGGGACCCCGAAGTCATT
1 TTATAACCATTTTTGTACAAATTATAATGATTTTATAAAACAGAACAGGGGACCCCGAAGTCATT
13931727 TGACTCTATCCCACGCCACTTCAAATATCTCATTATCAGCAATTCTTTTGTTTACACGGTTTCTT
66 TGACTCTATCCCACGCCACTTCAAATATCTCATTATCAGCAATTCTTTTGTTTACACGGTTTCTT
13931792 TTATAAGAAACTAGACTCATTAAGCTTTAATTATATAATTTATTCAGCTTCTAACTCAACTCCA
131 TTATAAGAAACTAGACTCATTAAGCTTTAATTATATAATTTATTCAGCTTCTAACTCAACTCCA
13931856 TTATAACCATTTTTGTACAAATTATAATGATTTTATAAAACAGAACAGGGGACCCCGAAGTCATT
1 TTATAACCATTTTTGTACAAATTATAATGATTTTATAAAACAGAACAGGGGACCCCGAAGTCATT
13931921 TGACTCTATCCCACGCCACTTCAAATATCTCATTATCAGCAATTCTTTTGTTTACACGGTTTCTT
66 TGACTCTATCCCACGCCACTTCAAATATCTCATTATCAGCAATTCTTTTGTTTACACGGTTTCTT
13931986 TTATAAGAAACTAGACTCATTAAGCTTTAATTATATAATTTATTCAGCTTCTAACTCAACTCCA
131 TTATAAGAAACTAGACTCATTAAGCTTTAATTATATAATTTATTCAGCTTCTAACTCAACTCCA
13932050 ACAATTTATG
Statistics
Matches: 194, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
194 194 1.00
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.37
Consensus pattern (194 bp):
TTATAACCATTTTTGTACAAATTATAATGATTTTATAAAACAGAACAGGGGACCCCGAAGTCATT
TGACTCTATCCCACGCCACTTCAAATATCTCATTATCAGCAATTCTTTTGTTTACACGGTTTCTT
TTATAAGAAACTAGACTCATTAAGCTTTAATTATATAATTTATTCAGCTTCTAACTCAACTCCA
Found at i:13932715 original size:26 final size:26
Alignment explanation
Indices: 13932686--13932745 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
13932676 TTCCTTTGAA
* * *
13932686 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
13932712 TCATTTTCAATATCTCGCACACTAAGTG
1 TCA--TTCAATATCTCGCACACTAAGTG
*
13932740 CCATTC
1 TCATTC
13932746 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 6 0.21
28 22 0.79
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.37
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:13932731 original size:28 final size:28
Alignment explanation
Indices: 13932700--13932771 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
13932690 TCGATATTTT
* *
13932700 GCACACTAAGTGTCATTTTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
13932728 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
13932756 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
13932772 ATTTGATTGC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:13936958 original size:38 final size:38
Alignment explanation
Indices: 13936913--13937032 Score: 161
Period size: 38 Copynumber: 3.1 Consensus size: 38
13936903 TTTAAACTCA
* *
13936913 GATATAATACTAGCACTAGGCCTGCGGGATTTAACCCG
1 GATATAATACCAGCACTAAGCCTGCGGGATTTAACCCG
*
13936951 GATATAATACCAGCACGAAGCCTGCGGGATTTAACCCG
1 GATATAATACCAGCACTAAGCCTGCGGGATTTAACCCG
* *
13936989 GATATAATTCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCG
1 GATATAATACCAGCACTA-AGCCTGCGGG-ATTTAA-CCCG
13937029 GATA
1 GATA
13937033 CAATCTCAGC
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
37 1 0.01
38 59 0.81
39 5 0.07
40 8 0.11
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.23
Consensus pattern (38 bp):
GATATAATACCAGCACTAAGCCTGCGGGATTTAACCCG
Found at i:13941915 original size:28 final size:28
Alignment explanation
Indices: 13941881--13942063 Score: 186
Period size: 28 Copynumber: 6.5 Consensus size: 28
13941871 AACCGATCTT
* *
13941881 GCACACACAGTGCTTGGTTACGGAACTT
1 GCACACACAGTGCTCGGTTACGGAACTC
**** * *
13941909 GCACACACAGTGCCTCAACAACTGATCTC
1 GCACACACAGTG-CTCGGTTACGGAACTC
*
13941938 GCACACACAGTGCTCGGTTACGAAACTC
1 GCACACACAGTGCTCGGTTACGGAACTC
***** * *
13941966 GCACACACAGTGCCTTAACAACCGATCTC
1 GCACACACAGTG-CTCGGTTACGGAACTC
*
13941995 GCACACACAGTGCTTGGTTACGGAACTC
1 GCACACACAGTGCTCGGTTACGGAACTC
13942023 GCACACACAGTGCTCGGTTACGGAACTC
1 GCACACACAGTGCTCGGTTACGGAACTC
*
13942051 ACACACACAGTGC
1 GCACACACAGTGC
13942064 CTATGTTCAC
Statistics
Matches: 122, Mismatches: 31, Indels: 4
0.78 0.20 0.03
Matches are distributed among these distances:
28 82 0.67
29 40 0.33
ACGTcount: A:0.28, C:0.33, G:0.20, T:0.19
Consensus pattern (28 bp):
GCACACACAGTGCTCGGTTACGGAACTC
Found at i:13941942 original size:57 final size:57
Alignment explanation
Indices: 13941851--13942035 Score: 289
Period size: 57 Copynumber: 3.2 Consensus size: 57
13941841 GATCTCATTT
* * *
13941851 CACACACTTAGTGCCCCAACAACCGATCTTGCACACACAGTGCTTGGTTACGGAACTTG
1 CACACAC--AGTGCCTCAACAACCGATCTCGCACACACAGTGCTTGGTTACGGAACTCG
* * *
13941910 CACACACAGTGCCTCAACAACTGATCTCGCACACACAGTGCTCGGTTACGAAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTTGGTTACGGAACTCG
*
13941967 CACACACAGTGCCTTAACAACCGATCTCGCACACACAGTGCTTGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTTGGTTACGGAACTCG
13942024 CACACACAGTGC
1 CACACACAGTGC
13942036 TCGGTTACGG
Statistics
Matches: 116, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
57 109 0.94
59 7 0.06
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.19
Consensus pattern (57 bp):
CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTTGGTTACGGAACTCG
Found at i:13941997 original size:29 final size:29
Alignment explanation
Indices: 13941868--13942007 Score: 112
Period size: 29 Copynumber: 4.9 Consensus size: 29
13941858 TTAGTGCCCC
*
13941868 AACAACCGATCTTGCACACACAGTG-CTT
1 AACAACCGATCTCGCACACACAGTGCCTT
**** * * * *
13941896 GGTTACGGAACTTGCACACACAGTGCCTC
1 AACAACCGATCTCGCACACACAGTGCCTT
*
13941925 AACAACTGATCTCGCACACACAGTGCTCGGTT
1 AACAACCGATCTCGCACACACAGTGC-C--TT
13941957 -ACGAA---A-CTCGCACACACAGTGCCTT
1 AAC-AACCGATCTCGCACACACAGTGCCTT
13941982 AACAACCGATCTCGCACACACAGTGC
1 AACAACCGATCTCGCACACACAGTGC
13942008 TTGGTTACGG
Statistics
Matches: 87, Mismatches: 15, Indels: 19
0.72 0.12 0.16
Matches are distributed among these distances:
25 4 0.05
26 2 0.02
27 1 0.01
28 36 0.41
29 38 0.44
30 1 0.01
31 2 0.02
32 3 0.03
ACGTcount: A:0.30, C:0.34, G:0.18, T:0.19
Consensus pattern (29 bp):
AACAACCGATCTCGCACACACAGTGCCTT
Found at i:13943615 original size:39 final size:38
Alignment explanation
Indices: 13943562--13943651 Score: 153
Period size: 39 Copynumber: 2.3 Consensus size: 38
13943552 ATCATGCTCA
*
13943562 ATGATTCGCACACAACCGTTCAAATTAGCAATTATAAG
1 ATGATTCGCACACAACCGCTCAAATTAGCAATTATAAG
13943600 ATGATTCTGCACACAACCGCTCAAATTAGCAATTATAAG
1 ATGATTC-GCACACAACCGCTCAAATTAGCAATTATAAG
13943639 ATGATTCCGCACA
1 ATGATT-CGCACA
13943652 TAGTCCACCC
Statistics
Matches: 49, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
38 7 0.14
39 41 0.84
40 1 0.02
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26
Consensus pattern (38 bp):
ATGATTCGCACACAACCGCTCAAATTAGCAATTATAAG
Found at i:13944084 original size:26 final size:26
Alignment explanation
Indices: 13944055--13944114 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
13944045 TCCCTTTGAA
* * *
13944055 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
13944081 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
13944109 CCATTC
1 TCATTC
13944115 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:13944100 original size:28 final size:28
Alignment explanation
Indices: 13944069--13944140 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
13944059 TCGATATTTT
*
13944069 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
13944097 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
13944125 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
13944141 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:13949677 original size:31 final size:30
Alignment explanation
Indices: 13949613--13949679 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 30
13949603 GTCAATCTAC
13949613 ATAAATAATATACATAAAATAAAAACTTAAT
1 ATAAATAATATACATAAAATAAAAAC-TAAT
*
13949644 ATAAATAATTGATACATGAAAATACAAA-T-AT
1 ATAAATAA-T-ATACAT-AAAATAAAAACTAAT
13949675 ATAAA
1 ATAAA
13949680 AGTATTTGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
31 15 0.47
32 2 0.06
33 6 0.19
34 9 0.28
ACGTcount: A:0.63, C:0.06, G:0.03, T:0.28
Consensus pattern (30 bp):
ATAAATAATATACATAAAATAAAAACTAAT
Found at i:13950911 original size:5 final size:5
Alignment explanation
Indices: 13950903--13950944 Score: 61
Period size: 5 Copynumber: 8.6 Consensus size: 5
13950893 CTAATTTAAT
13950903 AATAA AATAA AATAA AATAA AA-ATA AAT-A AATAA AATAA AAT
1 AATAA AATAA AATAA AATAA AATA-A AATAA AATAA AATAA AAT
13950945 GATATCTTCC
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 5 0.15
5 29 0.85
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:13951596 original size:44 final size:44
Alignment explanation
Indices: 13951546--13951783 Score: 157
Period size: 44 Copynumber: 5.4 Consensus size: 44
13951536 GCTCTATTGC
*
13951546 AACTTCAGGGAGATAAGACTTGTTTCTTGAACTTGCTCCACTGT
1 AACTTCAGGGAGATAAGACTTGTATCTTGAACTTGCTCCACTGT
* * * * * *
13951590 AACTTCAGGGAGATAAGGCTGGTAGCTT-AAATCTGCTCCATTGC
1 AACTTCAGGGAGATAAGACTTGTATCTTGAACT-TGCTCCACTGT
** * * ** * *
13951634 CGCTACATGGAGATAAGA-TTCACCATCTTCGATC-TGCTCCACTACT
1 AACTTCAGGGAGATAAGACTT--GTATCTT-GAACTTGCTCCACT-GT
* * ** *
13951680 -GCTT-AGGGAGATAA-AATCTGTAAT-TTTCAGTCTGCTCCACTGT
1 AACTTCAGGGAGATAAGACT-TGT-ATCTTGAACT-TGCTCCACTGT
* *
13951723 AACTTCAAGGAGATAAGACTTGTATCTTGAACTTGCTCCACTGC
1 AACTTCAGGGAGATAAGACTTGTATCTTGAACTTGCTCCACTGT
13951767 AACTTCAGGGAGATAAG
1 AACTTCAGGGAGATAAG
13951784 GCTGGTGGCT
Statistics
Matches: 141, Mismatches: 38, Indels: 30
0.67 0.18 0.14
Matches are distributed among these distances:
43 8 0.06
44 98 0.70
45 32 0.23
46 2 0.01
47 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (44 bp):
AACTTCAGGGAGATAAGACTTGTATCTTGAACTTGCTCCACTGT
Found at i:13951640 original size:177 final size:177
Alignment explanation
Indices: 13951367--13951885 Score: 743
Period size: 177 Copynumber: 2.9 Consensus size: 177
13951357 ACTCTGCTGA
* * * * * *
13951367 AACTTGAAGGAGATAAGAATTGGTAAT-TTTAACCTACTCCACTGCAACTTCAGGGAGATAAGGT
1 AACTTCAAGGAGATAAGACTT-GT-ATCTTGAACTTGCTCCACTGCAACTTCAGGGAGATAAGGC
* * * *
13951431 TTGTGGTCTTAAATCTGCTCCATTGCCGCTACATGGAGATAAAATTCACTGTCTTCGATCTACTC
64 TGGTGG-CTTAAATCTGCTCCATTGCCGCTACATGGAGATAAGATTCACTATCTTCGATCTGCTC
* * * * *
13951496 CACTATTGCTTAGGGAGATAAGATATGCAATTTTTAGCCTGCTCTATTGC
128 CACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAGCCTGCTCCACTGC
* * *
13951546 AACTTCAGGGAGATAAGACTTGTTTCTTGAACTTGCTCCACTGTAACTTCAGGGAGATAAGGCTG
1 AACTTCAAGGAGATAAGACTTGTATCTTGAACTTGCTCCACTGCAACTTCAGGGAGATAAGGCTG
* *
13951611 GTAGCTTAAATCTGCTCCATTGCCGCTACATGGAGATAAGATTCACCATCTTCGATCTGCTCCAC
66 GTGGCTTAAATCTGCTCCATTGCCGCTACATGGAGATAAGATTCACTATCTTCGATCTGCTCCAC
* * * *
13951676 TACTGCTTAGGGAGATAAAATCTGTAATTTTCAGTCTGCTCCACTGT
131 TACTGCTTAGGGAGATAAGATCTGCAATTTTCAGCCTGCTCCACTGC
13951723 AACTTCAAGGAGATAAGACTTGTATCTTGAACTTGCTCCACTGCAACTTCAGGGAGATAAGGCTG
1 AACTTCAAGGAGATAAGACTTGTATCTTGAACTTGCTCCACTGCAACTTCAGGGAGATAAGGCTG
* ** *
13951788 GTGGCTTAAATCTGGTCCATTGCCGCTACATGGAGATAAGATTTGCTATCTTTGATCTGCTCCAC
66 GTGGCTTAAATCTGCTCCATTGCCGCTACATGGAGATAAGATTCACTATCTTCGATCTGCTCCAC
*
13951853 TACTACTTAGGGAGATAAGATCTGCAATTTTCA
131 TACTGCTTAGGGAGATAAGATCTGCAATTTTCA
13951886 CTGGTGTTGC
Statistics
Matches: 303, Mismatches: 36, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
177 247 0.82
178 38 0.13
179 18 0.06
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.31
Consensus pattern (177 bp):
AACTTCAAGGAGATAAGACTTGTATCTTGAACTTGCTCCACTGCAACTTCAGGGAGATAAGGCTG
GTGGCTTAAATCTGCTCCATTGCCGCTACATGGAGATAAGATTCACTATCTTCGATCTGCTCCAC
TACTGCTTAGGGAGATAAGATCTGCAATTTTCAGCCTGCTCCACTGC
Found at i:13957987 original size:21 final size:21
Alignment explanation
Indices: 13957944--13957987 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
13957934 GAAATGCAAG
*
13957944 AAAAGAATATTTGCTCAGGAT
1 AAAAGAATATTTGCTCAGAAT
* *
13957965 AAAAGAATATTTTCTTAGAAT
1 AAAAGAATATTTGCTCAGAAT
13957986 AA
1 AA
13957988 GACATAAAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.48, C:0.07, G:0.14, T:0.32
Consensus pattern (21 bp):
AAAAGAATATTTGCTCAGAAT
Found at i:13966733 original size:16 final size:16
Alignment explanation
Indices: 13966712--13966753 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
13966702 CTAATTTAAT
*
13966712 AATAAAATAAAATAAA
1 AATAAAATAAAACAAA
13966728 AAT-AAATAAAAACAAA
1 AATAAAAT-AAAACAAA
13966744 AATAAAATAA
1 AATAAAATAA
13966754 TATCTTCCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 4 0.17
16 15 0.65
17 4 0.17
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.17
Consensus pattern (16 bp):
AATAAAATAAAACAAA
Found at i:13973255 original size:207 final size:207
Alignment explanation
Indices: 13972900--13973314 Score: 812
Period size: 207 Copynumber: 2.0 Consensus size: 207
13972890 TTTTGAAATC
*
13972900 TTCGTAGCTCGGTTTACTTATTTTTACCATTAGTTCGAGTTAGGGTTTATGTTTAAAAATTTACC
1 TTCGTAGCTCGGTTTACTTATTTCTACCATTAGTTCGAGTTAGGGTTTATGTTTAAAAATTTACC
13972965 CATGAATGATAGGCATGTATTTTGTTGTTTGATGGTAGAATATGAATGTTTGAAGTTAGGGGAAC
66 CATGAATGATAGGCATGTATTTTGTTGTTTGATGGTAGAATATGAATGTTTGAAGTTAGGGGAAC
13973030 GATCTTTTCTAAGCGATTTTTAACGAAAACGGACAAAACGACATAATTGATAAAAATACCTATTG
131 GATCTTTTCTAAGCGATTTTTAACGAAAACGGACAAAACGACATAATTGATAAAAATACCTATTG
13973095 TTCATAACTATG
196 TTCATAACTATG
13973107 TTCGTAGCTCGGTTTACTTATTTCTACCATTAGTTCGAGTTAGGGTTTATGTTTAAAAATTTACC
1 TTCGTAGCTCGGTTTACTTATTTCTACCATTAGTTCGAGTTAGGGTTTATGTTTAAAAATTTACC
*
13973172 CATGAATGATAGGCATGTATTTTGTTGTTTTATGGTAGAATATGAATGTTTGAAGTTAGGGGAAC
66 CATGAATGATAGGCATGTATTTTGTTGTTTGATGGTAGAATATGAATGTTTGAAGTTAGGGGAAC
13973237 GATCTTTTCTAAGCGATTTTTAACGAAAACGGACAAAACGACATAATTGATAAAAATACCTATTG
131 GATCTTTTCTAAGCGATTTTTAACGAAAACGGACAAAACGACATAATTGATAAAAATACCTATTG
13973302 TTCATAACTATG
196 TTCATAACTATG
13973314 T
1 T
13973315 GTTAGAGTGA
Statistics
Matches: 206, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
207 206 1.00
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (207 bp):
TTCGTAGCTCGGTTTACTTATTTCTACCATTAGTTCGAGTTAGGGTTTATGTTTAAAAATTTACC
CATGAATGATAGGCATGTATTTTGTTGTTTGATGGTAGAATATGAATGTTTGAAGTTAGGGGAAC
GATCTTTTCTAAGCGATTTTTAACGAAAACGGACAAAACGACATAATTGATAAAAATACCTATTG
TTCATAACTATG
Found at i:13975569 original size:41 final size:40
Alignment explanation
Indices: 13975513--13975660 Score: 215
Period size: 41 Copynumber: 3.6 Consensus size: 40
13975503 TAAAAACAGA
*
13975513 GCGCTCTTGGCAAAACGCCGCTGAAAACCAGAGCATTAGCG
1 GCGCTTTTGGCAAAACGCCGCT-AAAACCAGAGCATTAGCG
* * *
13975554 GCGCTTTTGGAAAAACGCCGCTAAAAACAGAGCAATAGCG
1 GCGCTTTTGGCAAAACGCCGCTAAAACCAGAGCATTAGCG
13975594 GCGCTTTTGGCAAAACGCCGCTAAAAACCAGAGCATTAGCG
1 GCGCTTTTGGCAAAACGCCGCT-AAAACCAGAGCATTAGCG
* * *
13975635 GCGCTTTCGACAAAACGCCACTAAAA
1 GCGCTTTTGGCAAAACGCCGCTAAAA
13975661 GTCATATAAC
Statistics
Matches: 96, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
40 41 0.43
41 55 0.57
ACGTcount: A:0.34, C:0.27, G:0.24, T:0.16
Consensus pattern (40 bp):
GCGCTTTTGGCAAAACGCCGCTAAAACCAGAGCATTAGCG
Found at i:13975823 original size:25 final size:25
Alignment explanation
Indices: 13975789--13975838 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
13975779 AGAGATAGTA
13975789 TTGAATTTAAAATATCGAATTAATT
1 TTGAATTTAAAATATCGAATTAATT
13975814 TTGAATTTAAAATATCGAATTAATT
1 TTGAATTTAAAATATCGAATTAATT
13975839 ATCATTATAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.44
Consensus pattern (25 bp):
TTGAATTTAAAATATCGAATTAATT
Found at i:13975882 original size:21 final size:22
Alignment explanation
Indices: 13975855--13975935 Score: 94
Period size: 21 Copynumber: 3.6 Consensus size: 22
13975845 ATAGTTTAAG
13975855 GTTTAGGGTTTAAGATATATGA
1 GTTTAGGGTTTAAGATATATGA
* *
13975877 -TTTAGGGTTTAAGGTTTATGA
1 GTTTAGGGTTTAAGATATATGA
*
13975898 GTTAACTATGGTTTAAGATATAT-A
1 GTT---TAGGGTTTAAGATATATGA
13975922 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
13975936 GTTTAGGAGT
Statistics
Matches: 49, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
21 29 0.59
22 2 0.04
24 4 0.08
25 14 0.29
ACGTcount: A:0.30, C:0.01, G:0.26, T:0.43
Consensus pattern (22 bp):
GTTTAGGGTTTAAGATATATGA
Found at i:13975914 original size:46 final size:46
Alignment explanation
Indices: 13975861--13975951 Score: 157
Period size: 46 Copynumber: 2.0 Consensus size: 46
13975851 TAAGGTTTAG
*
13975861 GGTTTAAGATATAT-GATTTAGGGTTTAAGGTTTATGAGTTAACTAT
1 GGTTTAAGATATATAG-TTTAGGGTTTAAGGTTTAGGAGTTAACTAT
13975907 GGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAGGAGTTAACTA
1 GGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAGGAGTTAACTA
13975952 GTATTTGAAG
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
46 42 0.98
47 1 0.02
ACGTcount: A:0.31, C:0.02, G:0.25, T:0.42
Consensus pattern (46 bp):
GGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAGGAGTTAACTAT
Found at i:13976029 original size:22 final size:22
Alignment explanation
Indices: 13975991--13976039 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
13975981 TTTAGGGGTT
*
13975991 AGGG-TTGGAGTTTAAGGTGTA
1 AGGGTTTGGAGTTAAAGGTGTA
* *
13976012 AGGGTTTGGGGTTAAAGGTTTA
1 AGGGTTTGGAGTTAAAGGTGTA
13976034 AGGGTT
1 AGGGTT
13976040 AGTGTTTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 4 0.17
22 20 0.83
ACGTcount: A:0.22, C:0.00, G:0.43, T:0.35
Consensus pattern (22 bp):
AGGGTTTGGAGTTAAAGGTGTA
Found at i:13978599 original size:20 final size:20
Alignment explanation
Indices: 13978574--13978614 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
13978564 TTACTATAAA
13978574 TCTTATTGGTAAAATTTTGC
1 TCTTATTGGTAAAATTTTGC
13978594 TCTTATTGGTAAAATTTTGC
1 TCTTATTGGTAAAATTTTGC
13978614 T
1 T
13978615 ATCTGTCCTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.10, G:0.15, T:0.51
Consensus pattern (20 bp):
TCTTATTGGTAAAATTTTGC
Found at i:13979924 original size:17 final size:18
Alignment explanation
Indices: 13979902--13979935 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
13979892 TACATGTGGG
13979902 GGAATATGGAG-TCAACT
1 GGAATATGGAGTTCAACT
13979919 GGAATATGGAGTTCAAC
1 GGAATATGGAGTTCAAC
13979936 ATTTTGGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.24
Consensus pattern (18 bp):
GGAATATGGAGTTCAACT
Found at i:13980406 original size:43 final size:43
Alignment explanation
Indices: 13980249--13980397 Score: 192
Period size: 43 Copynumber: 3.5 Consensus size: 43
13980239 TTTTTTAAGA
* *
13980249 TCATGGTTTTTAGCGGCGTTTGAGAAAAAAGCGCCGCTAAAGG
1 TCATGGTCTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGG
* *** *
13980292 TCATGGTTTTTAGCGGCGTTT-TTTTAAAAGCGCCGCTAAAAG
1 TCATGGTCTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGG
* * * *
13980334 TCTTAGTCTTTAGCGGCATTTGCGAAAAAAGCGCCGCTAAAGG
1 TCATGGTCTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGG
13980377 TCATGGTCTTTAGCGGCGTTT
1 TCATGGTCTTTAGCGGCGTTT
13980398 TTTCAAAAAA
Statistics
Matches: 88, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
42 33 0.38
43 55 0.62
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
TCATGGTCTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGG
Found at i:13986449 original size:51 final size:51
Alignment explanation
Indices: 13986393--13986493 Score: 193
Period size: 51 Copynumber: 2.0 Consensus size: 51
13986383 GAGAGAGATT
*
13986393 CCGGTTGAACATTCGGAAAAATCGAATAAAATAGAGGGAGCGTAGCTAGGC
1 CCGGTTGAACATTCAGAAAAATCGAATAAAATAGAGGGAGCGTAGCTAGGC
13986444 CCGGTTGAACATTCAGAAAAATCGAATAAAATAGAGGGAGCGTAGCTAGG
1 CCGGTTGAACATTCAGAAAAATCGAATAAAATAGAGGGAGCGTAGCTAGG
13986494 TCACATGTAC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.39, C:0.15, G:0.29, T:0.18
Consensus pattern (51 bp):
CCGGTTGAACATTCAGAAAAATCGAATAAAATAGAGGGAGCGTAGCTAGGC
Found at i:13990910 original size:66 final size:66
Alignment explanation
Indices: 13990804--13991040 Score: 474
Period size: 66 Copynumber: 3.6 Consensus size: 66
13990794 ACAACTGTGT
13990804 AGCATGCCCATAAACTAATTTAATTCTAAAAAGGTTGGAGTAGTTGAACAGAAATTGAATTATAT
1 AGCATGCCCATAAACTAATTTAATTCTAAAAAGGTTGGAGTAGTTGAACAGAAATTGAATTATAT
13990869 G
66 G
13990870 AGCATGCCCATAAACTAATTTAATTCTAAAAAGGTTGGAGTAGTTGAACAGAAATTGAATTATAT
1 AGCATGCCCATAAACTAATTTAATTCTAAAAAGGTTGGAGTAGTTGAACAGAAATTGAATTATAT
13990935 G
66 G
13990936 AGCATGCCCATAAACTAATTTAATTCTAAAAAGGTTGGAGTAGTTGAACAGAAATTGAATTATAT
1 AGCATGCCCATAAACTAATTTAATTCTAAAAAGGTTGGAGTAGTTGAACAGAAATTGAATTATAT
13991001 G
66 G
13991002 AGCATGCCCATAAACTAATTTAATTCTAAAAAGGTTGGA
1 AGCATGCCCATAAACTAATTTAATTCTAAAAAGGTTGGA
13991041 ATAGGGTTAC
Statistics
Matches: 171, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 171 1.00
ACGTcount: A:0.41, C:0.11, G:0.18, T:0.30
Consensus pattern (66 bp):
AGCATGCCCATAAACTAATTTAATTCTAAAAAGGTTGGAGTAGTTGAACAGAAATTGAATTATAT
G
Found at i:14008412 original size:96 final size:96
Alignment explanation
Indices: 14008342--14008941 Score: 1102
Period size: 96 Copynumber: 6.3 Consensus size: 96
14008332 GATAATTGTG
14008342 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATAT
14008405 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCGAATGGCCAATGTGATGA
14008436 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATAT
14008501 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCGAATGGCCAATGTGATGA
14008532 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATAT
14008597 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCGAATGGCCAATGTGATGA
14008628 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATAT
14008693 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCGAATGGCCAATGTGATGA
14008724 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATAT
14008789 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCGAATGGCCAATGTGATGA
*
14008820 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATAT
* ** * *
14008885 ATGTGA-CAGAGCCGAGGGGCCAACGTGATGG
66 ATGTGATAAG-GCCGAATGGCCAATGTGATGA
14008916 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
14008942 TCCCGAAGGG
Statistics
Matches: 497, Mismatches: 6, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
94 15 0.03
95 5 0.01
96 477 0.96
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATAT
ATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:14017086 original size:45 final size:45
Alignment explanation
Indices: 14017025--14017185 Score: 250
Period size: 45 Copynumber: 3.6 Consensus size: 45
14017015 TGTACAGTAC
* * *
14017025 TATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCTGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCAGGTGAGATAA
*
14017070 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCAGGAGAGATAA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCAGGTGAGATAA
* * *
14017115 TATTCGGGCCTTTGAGCCTAGCAAGCTATACTGCCGGTGAGATAA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCAGGTGAGATAA
*
14017160 TATTCGAGCCTTTGAGCCTAGCAGGC
1 TATTCGGGCCTTTGAGCCTAGCAGGC
14017186 AAAATACCAG
Statistics
Matches: 106, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 106 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCAGGTGAGATAA
Found at i:14020338 original size:30 final size:30
Alignment explanation
Indices: 14020293--14020352 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
14020283 ATTTAATACG
*
14020293 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
14020323 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
14020353 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:14027870 original size:45 final size:46
Alignment explanation
Indices: 14027782--14027873 Score: 168
Period size: 45 Copynumber: 2.0 Consensus size: 46
14027772 TAAAACTTGT
14027782 TGATTTGAATATTGTACAGTACTATATTCGGGCCTTTGAGCCTAGCA
1 TGATTTGAATATTGTACAGTAC-ATATTCGGGCCTTTGAGCCTAGCA
14027829 TGATTTGAATATTGTACAGTAC-TATTCGGGCCTTTGAGCCTAGCA
1 TGATTTGAATATTGTACAGTACATATTCGGGCCTTTGAGCCTAGCA
14027874 GGCTATAACG
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
45 23 0.51
47 22 0.49
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (46 bp):
TGATTTGAATATTGTACAGTACATATTCGGGCCTTTGAGCCTAGCA
Found at i:14027902 original size:45 final size:45
Alignment explanation
Indices: 14027848--14028068 Score: 340
Period size: 45 Copynumber: 5.0 Consensus size: 45
14027838 TATTGTACAG
*
14027848 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAACGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
14027893 TACTCTTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
14027938 TATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCAGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
14027983 TAATATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
14028028 TATTATTCGGGCC-TTGAGCCTAGCAGG-TGA-AATGCCGGTGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCT-ATAATGCCGGTGA
14028069 ATGAATTTAG
Statistics
Matches: 164, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
43 11 0.07
44 15 0.09
45 138 0.84
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:14029390 original size:17 final size:17
Alignment explanation
Indices: 14029357--14029390 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
14029347 TTCTGGCGTA
14029357 GTTTTGGTTTATCGTGT
1 GTTTTGGTTTATCGTGT
14029374 GTTTTCGGTTTAT-GTGT
1 GTTTT-GGTTTATCGTGT
14029391 TTGTCATTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.06, C:0.06, G:0.29, T:0.59
Consensus pattern (17 bp):
GTTTTGGTTTATCGTGT
Found at i:14036205 original size:27 final size:27
Alignment explanation
Indices: 14036174--14036351 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
14036164 TAAATTGTAC
14036174 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
14036201 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14036227 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
14036255 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
14036283 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14036310 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
14036337 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
14036352 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:14036288 original size:82 final size:81
Alignment explanation
Indices: 14036175--14036330 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
14036165 AAATTGTACA
* *
14036175 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
14036239 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
14036256 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
14036321 TGCGAGTTGA
65 TGCGAATTGA
14036331 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:14036342 original size:82 final size:81
Alignment explanation
Indices: 14036171--14036351 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
14036161 GATTAAATTG
* *
14036171 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
14036236 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
14036252 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
14036316 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
14036334 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
14036352 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:14039886 original size:232 final size:232
Alignment explanation
Indices: 14039480--14039942 Score: 917
Period size: 232 Copynumber: 2.0 Consensus size: 232
14039470 CGAAATAATC
*
14039480 CGAGTTGAGTCTGCGGACTTAAGGGGGTTGCCAGCTGTAATATCAGCAATGTTGGCCCAAAAATA
1 CGAGTTGAGTCTACGGACTTAAGGGGGTTGCCAGCTGTAATATCAGCAATGTTGGCCCAAAAATA
14039545 TGTAAGAAAAGGGTACGAAGCATACCTTGCGTATGTACTTGATGACAAAGAGTTAGGAAAGAAAC
66 TGTAAGAAAAGGGTACGAAGCATACCTTGCGTATGTACTTGATGACAAAGAGTTAGGAAAGAAAC
14039610 CCGAATCTGTGCCGGTGGTTTGTGAATACCCGGATGTTTTTCCTGAAGAATTACCGGGTTTGCCA
131 CCGAATCTGTGCCGGTGGTTTGTGAATACCCGGATGTTTTTCCTGAAGAATTACCGGGTTTGCCA
14039675 CCTGTTCGGGAGATAGAGTTTGGTATTGAGCTTGTAT
196 CCTGTTCGGGAGATAGAGTTTGGTATTGAGCTTGTAT
14039712 CGAGTTGAGTCTACGGACTTAAGGGGGTTGCCAGCTGTAATATCAGCAATGTTGGCCCAAAAATA
1 CGAGTTGAGTCTACGGACTTAAGGGGGTTGCCAGCTGTAATATCAGCAATGTTGGCCCAAAAATA
14039777 TGTAAGAAAAGGGTACGAAGCATACCTTGCGTATGTACTTGATGACAAAGAGTTAGGAAAGAAAC
66 TGTAAGAAAAGGGTACGAAGCATACCTTGCGTATGTACTTGATGACAAAGAGTTAGGAAAGAAAC
14039842 CCGAATCTGTGCCGGTGGTTTGTGAATACCCGGATGTTTTTCCTGAAGAATTACCGGGTTTGCCA
131 CCGAATCTGTGCCGGTGGTTTGTGAATACCCGGATGTTTTTCCTGAAGAATTACCGGGTTTGCCA
14039907 CCTGTTCGGGAGATAGAGTTTGGTATTGAGCTTGTA
196 CCTGTTCGGGAGATAGAGTTTGGTATTGAGCTTGTA
14039943 CCTGGAACTA
Statistics
Matches: 230, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
232 230 1.00
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (232 bp):
CGAGTTGAGTCTACGGACTTAAGGGGGTTGCCAGCTGTAATATCAGCAATGTTGGCCCAAAAATA
TGTAAGAAAAGGGTACGAAGCATACCTTGCGTATGTACTTGATGACAAAGAGTTAGGAAAGAAAC
CCGAATCTGTGCCGGTGGTTTGTGAATACCCGGATGTTTTTCCTGAAGAATTACCGGGTTTGCCA
CCTGTTCGGGAGATAGAGTTTGGTATTGAGCTTGTAT
Found at i:14042870 original size:53 final size:53
Alignment explanation
Indices: 14042787--14042893 Score: 205
Period size: 53 Copynumber: 2.0 Consensus size: 53
14042777 TGGTTTCGGG
*
14042787 ACCGCTAAACCGAGTCACCGAAAGGTTTGAATGTGATGTTTATTATCTAGAAT
1 ACCGCTAAACCGAGTCACCGAAAGGGTTGAATGTGATGTTTATTATCTAGAAT
14042840 ACCGCTAAACCGAGTCACCGAAAGGGTTGAATGTGATGTTTATTATCTAGAAT
1 ACCGCTAAACCGAGTCACCGAAAGGGTTGAATGTGATGTTTATTATCTAGAAT
14042893 A
1 A
14042894 TGTAATCATG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (53 bp):
ACCGCTAAACCGAGTCACCGAAAGGGTTGAATGTGATGTTTATTATCTAGAAT
Found at i:14043332 original size:70 final size:72
Alignment explanation
Indices: 14043230--14043371 Score: 270
Period size: 71 Copynumber: 2.0 Consensus size: 72
14043220 GTGAAAGTAA
14043230 GAAGGAAAAACAAAAAAAAAAAGTGTCCATC-TTCTTCATTTCCCCTTGGCCGAATGTTCTAAAG
1 GAAGGAAAAACAAAAAAAAAAAGTGTCCATCTTTCTTCATTTCCCCTTGGCCGAATGTTCTAAAG
14043294 AAGAAAG
66 AAGAAAG
14043301 GAAGGAAAAAC-AAAAAAAAAAGTGTCCATCTTTCTTCATTTCCCCTTGGCCGAATGTTCTAAAG
1 GAAGGAAAAACAAAAAAAAAAAGTGTCCATCTTTCTTCATTTCCCCTTGGCCGAATGTTCTAAAG
14043365 AAGAAAG
66 AAGAAAG
14043372 AAAAAAAATT
Statistics
Matches: 70, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
70 19 0.27
71 51 0.73
ACGTcount: A:0.42, C:0.18, G:0.17, T:0.23
Consensus pattern (72 bp):
GAAGGAAAAACAAAAAAAAAAAGTGTCCATCTTTCTTCATTTCCCCTTGGCCGAATGTTCTAAAG
AAGAAAG
Found at i:14044686 original size:82 final size:81
Alignment explanation
Indices: 14044573--14044728 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
14044563 AAATTGTACA
* * * *
14044573 GCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGGGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
14044637 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
14044654 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGGGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
14044719 TGCGAGTTGA
65 TGCGAATTGA
14044729 TTGTATAGCA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 15 0.23
82 49 0.77
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGGGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:14044730 original size:27 final size:27
Alignment explanation
Indices: 14044573--14044728 Score: 161
Period size: 27 Copynumber: 5.7 Consensus size: 27
14044563 AAATTGTACA
* * *
14044573 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
14044600 GCACTCAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
14044627 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
14044654 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
14044682 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
14044709 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
14044729 TTGTATAGCA
Statistics
Matches: 107, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
27 83 0.78
28 24 0.22
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:14044739 original size:27 final size:27
Alignment explanation
Indices: 14044572--14044749 Score: 151
Period size: 27 Copynumber: 6.6 Consensus size: 27
14044562 TAAATTGTAC
* * *
14044572 AGCACTAAGGGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * ** *
14044599 TGCACTCAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
* ** *
14044625 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* *
14044653 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
14044681 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
14044708 GGCACTAAGTGTGCGAGTTGATTGTAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
14044735 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
14044750 GGCTCAATAT
Statistics
Matches: 122, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
27 99 0.81
28 23 0.19
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:14044740 original size:82 final size:81
Alignment explanation
Indices: 14044565--14044749 Score: 201
Period size: 82 Copynumber: 2.3 Consensus size: 81
14044555 GCGGGATTAA
* * * * *
14044565 ATTGTACAGCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
14044630 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
14044646 ACCATGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
14044710 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
14044728 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
14044750 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 21, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
81 18 0.22
82 63 0.78
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:14047198 original size:21 final size:21
Alignment explanation
Indices: 14047147--14047198 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
14047137 TTTTGCCTAA
14047147 GATG-TAAATTGGACTAAATT
1 GATGTTAAATTGGACTAAATT
* * *
14047167 GA-GTATGAATTGTATTAAATT
1 GATGT-TAAATTGGACTAAATT
14047188 GATGTTAAATT
1 GATGTTAAATT
14047199 TACTCATATA
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
19 1 0.04
20 2 0.08
21 20 0.80
22 2 0.08
ACGTcount: A:0.38, C:0.02, G:0.19, T:0.40
Consensus pattern (21 bp):
GATGTTAAATTGGACTAAATT
Found at i:14047800 original size:24 final size:23
Alignment explanation
Indices: 14047764--14047808 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
14047754 CTATTACATG
*
14047764 GCTCTTTGCGAGCATTCCTAATAT
1 GCTCTTCGCGAGC-TTCCTAATAT
* *
14047788 GCTCTTCGTGAGCTTTCTAAT
1 GCTCTTCGCGAGCTTCCTAAT
14047809 TAAAAGTTCT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 7 0.39
24 11 0.61
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.40
Consensus pattern (23 bp):
GCTCTTCGCGAGCTTCCTAATAT
Found at i:14050619 original size:28 final size:28
Alignment explanation
Indices: 14050588--14050653 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
14050578 CCATTACAGA
* *
14050588 AACAGTATCAGGTGGGCCTTAGCCCAAT
1 AACAGAATCAGGTGGGCCTAAGCCCAAT
*
14050616 AACAGAATCAAGTGGGCCTAAGCCCAAT
1 AACAGAATCAGGTGGGCCTAAGCCCAAT
14050644 -ACAGAATCAG
1 AACAGAATCAG
14050654 TATCAGATGC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 9 0.26
28 25 0.74
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.17
Consensus pattern (28 bp):
AACAGAATCAGGTGGGCCTAAGCCCAAT
Found at i:14052961 original size:12 final size:11
Alignment explanation
Indices: 14052917--14052968 Score: 52
Period size: 11 Copynumber: 4.8 Consensus size: 11
14052907 AGAAATTTAA
14052917 TTTTTTTTC-T
1 TTTTTTTTCTT
* *
14052927 TTTATGTTCTT
1 TTTTTTTTCTT
**
14052938 TTAATTTTCTT
1 TTTTTTTTCTT
*
14052949 TTTTTTTTCCT
1 TTTTTTTTCTT
14052960 TTTTTTTTC
1 TTTTTTTTC
14052969 ATTCCCTTCT
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
10 7 0.21
11 27 0.79
ACGTcount: A:0.06, C:0.12, G:0.02, T:0.81
Consensus pattern (11 bp):
TTTTTTTTCTT
Found at i:14053932 original size:23 final size:22
Alignment explanation
Indices: 14053890--14053934 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
14053880 ACATACAACG
*
14053890 AGGAGTATTATTCTTCATTAAA
1 AGGAGTATTATTCATCATTAAA
14053912 AGGAGCTATTA-TCATCAATTAAA
1 AGGAG-TATTATTCATC-ATTAAA
14053935 GGGAACATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (22 bp):
AGGAGTATTATTCATCATTAAA
Found at i:14058905 original size:43 final size:43
Alignment explanation
Indices: 14058734--14058906 Score: 134
Period size: 43 Copynumber: 4.0 Consensus size: 43
14058724 ACATAGGATT
* * * * * * *
14058734 TCGATATATGATTTCGTGTAAGACCACGTTTGGGACATTGTCA
1 TCGATATTTGATTACATGTAAGACCATGTCTGGAACATTGGCA
* * * **
14058777 TCGAT-TTGAGATTTACATGTAAGACCATGCCTGGGACATCAGCA
1 TCGATATT-TGA-TTACATGTAAGACCATGTCTGGAACATTGGCA
*** * * * *
14058821 TCG-TATTTGATTTTGTGTAAGACCCTGTCTGGGATAGTGGCA
1 TCGATATTTGATTACATGTAAGACCATGTCTGGAACATTGGCA
*
14058863 TCGATATTTGATTACATGTAAGACCATGTCTGGAACGTTGGCA
1 TCGATATTTGATTACATGTAAGACCATGTCTGGAACATTGGCA
14058906 T
1 T
14058907 TGTACGAGTT
Statistics
Matches: 98, Mismatches: 28, Indels: 8
0.73 0.21 0.06
Matches are distributed among these distances:
42 27 0.28
43 42 0.43
44 29 0.30
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (43 bp):
TCGATATTTGATTACATGTAAGACCATGTCTGGAACATTGGCA
Found at i:14065840 original size:20 final size:20
Alignment explanation
Indices: 14065815--14065858 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
14065805 GGCTGAGGAT
14065815 ACGGGCGTGTCCCAAGCCAC
1 ACGGGCGTGTCCCAAGCCAC
14065835 ACGGGCGTGTCCCAAGCCAC
1 ACGGGCGTGTCCCAAGCCAC
14065855 ACGG
1 ACGG
14065859 CCCACCCACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.20, C:0.39, G:0.32, T:0.09
Consensus pattern (20 bp):
ACGGGCGTGTCCCAAGCCAC
Found at i:14067126 original size:83 final size:83
Alignment explanation
Indices: 14067031--14067195 Score: 321
Period size: 83 Copynumber: 2.0 Consensus size: 83
14067021 TAGTCAATAG
14067031 GACTTATATGAGAAAATTTTAAAATGTGATAGATCAATGCATGAGGACCTATTAGTGCATGTGGA
1 GACTTATATGAGAAAATTTTAAAATGTGATAGATCAATGCATGAGGACCTATTAGTGCATGTGGA
14067096 AGAAAAAGGGGACTTGCA
66 AGAAAAAGGGGACTTGCA
*
14067114 GACTTATATGAGAAAATTTTAAAATGTGATAGGTCAATGCATGAGGACCTATTAGTGCATGTGGA
1 GACTTATATGAGAAAATTTTAAAATGTGATAGATCAATGCATGAGGACCTATTAGTGCATGTGGA
14067179 AGAAAAAGGGGACTTGC
66 AGAAAAAGGGGACTTGC
14067196 GTGTCAAAGT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 81 1.00
ACGTcount: A:0.38, C:0.10, G:0.26, T:0.27
Consensus pattern (83 bp):
GACTTATATGAGAAAATTTTAAAATGTGATAGATCAATGCATGAGGACCTATTAGTGCATGTGGA
AGAAAAAGGGGACTTGCA
Found at i:14068796 original size:27 final size:27
Alignment explanation
Indices: 14068765--14068942 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
14068755 TGAATTGTAC
14068765 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
14068792 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14068818 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
14068846 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
14068874 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14068901 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
14068928 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
14068943 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:14068830 original size:54 final size:55
Alignment explanation
Indices: 14068740--14068942 Score: 216
Period size: 54 Copynumber: 3.7 Consensus size: 55
14068730 GAGATTGGCG
* * *
14068740 CTAAGTGTGCGGGATTGAAT-TGTACAGCACTAAGTGTGCGATTTGACTATGTTGCA
1 CTAAGTGTGC-GAATTGAATATG-ATAGCACTAAGTGTGCGATTTGACTATGTAGCA
* * * **
14068796 CTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCGGCA
1 CTAAGTGTGCGAATTGAATATGATAGCACTAAGTGTGCGATTTGACTATGTAGCA
* * * *
14068850 CTAAGTGTGCGAGTTTGACTATG-TAGCACTAAGTGTGCGATTTGATTACGTAGCA
1 CTAAGTGTGCGA-ATTGAATATGATAGCACTAAGTGTGCGATTTGACTATGTAGCA
* * *
14068905 CTAAGTGTGCGAGTTGATTAT-ATAGCACTGAGTGTGCG
1 CTAAGTGTGCGAATTGAATATGATAGCACTAAGTGTGCG
14068943 GACTCAATAT
Statistics
Matches: 124, Mismatches: 19, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
54 61 0.49
55 51 0.41
56 12 0.10
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (55 bp):
CTAAGTGTGCGAATTGAATATGATAGCACTAAGTGTGCGATTTGACTATGTAGCA
Found at i:14068933 original size:82 final size:81
Alignment explanation
Indices: 14068740--14068942 Score: 237
Period size: 82 Copynumber: 2.5 Consensus size: 81
14068730 GAGATTGGCG
* * *
14068740 CTAAGTGTGCGGGATTGAATTGTACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTG
1 CTAAGTGTGCGAG-TTG-ATTATACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTG
*
14068805 CGAAATGAATATGATGCA
64 CGAAATGAATACGATGCA
* ** * *
14068823 CTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGC
1 CTAAGTGTGCGAGTTGATTATACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGC
** *
14068888 GATTTGATTACG-TAGCA
65 GAAATGAATACGAT-GCA
* *
14068905 CTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 CTAAGTGTGCGAGTTGATTATACAGCACTAAGTGTGCG
14068943 GACTCAATAT
Statistics
Matches: 99, Mismatches: 19, Indels: 5
0.80 0.15 0.04
Matches are distributed among these distances:
81 19 0.19
82 69 0.70
83 11 0.11
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (81 bp):
CTAAGTGTGCGAGTTGATTATACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCG
AAATGAATACGATGCA
Found at i:14079567 original size:39 final size:39
Alignment explanation
Indices: 14079513--14079592 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
14079503 TTGAGATTTT
14079513 TGTTGAATGAGTTTCTGGGTGAGAAACCAAAGAGTTCAA
1 TGTTGAATGAGTTTCTGGGTGAGAAACCAAAGAGTTCAA
14079552 TGTTGAATGAGTTTCTGGGTGAGAAACCAAAGAGTTCAA
1 TGTTGAATGAGTTTCTGGGTGAGAAACCAAAGAGTTCAA
14079591 TG
1 TG
14079593 ATAGAATGGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.29
Consensus pattern (39 bp):
TGTTGAATGAGTTTCTGGGTGAGAAACCAAAGAGTTCAA
Found at i:14080337 original size:15 final size:15
Alignment explanation
Indices: 14080317--14080359 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
14080307 TCTTGTAAAT
*
14080317 TGGATTTCCTTATCA
1 TGGATTTCTTTATCA
* *
14080332 TGGATTTATTTATCT
1 TGGATTTCTTTATCA
14080347 TGGATTTCTTTAT
1 TGGATTTCTTTAT
14080360 TCTGGGCTTC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.19, C:0.12, G:0.14, T:0.56
Consensus pattern (15 bp):
TGGATTTCTTTATCA
Found at i:14089552 original size:44 final size:41
Alignment explanation
Indices: 14089482--14089607 Score: 103
Period size: 42 Copynumber: 3.0 Consensus size: 41
14089472 TTCCGATATA
** ** *
14089482 TGATTTTGTATAAGACCACATCTGGGATGTTGGCATCGATT
1 TGATTTTGCGTAAGACCATGTCTGGGAAGTTGGCATCGATT
* *
14089523 TGAGATTTATGCGTAAGACCATGTTTGGGACA-TCGGCATCGTATT
1 T--GATTT-TGCGTAAGACCATGTCTGGGA-AGTTGGCATCG-ATT
* *
14089568 TGATTTTGTGTAAGACCTTGTCTGGGACAG-TGGCATCGAT
1 TGATTTTGCGTAAGACCATGTCTGGGA-AGTTGGCATCGAT
14089608 ATTTGATTAC
Statistics
Matches: 68, Mismatches: 11, Indels: 12
0.75 0.12 0.13
Matches are distributed among these distances:
41 3 0.04
42 27 0.40
43 10 0.15
44 24 0.35
45 4 0.06
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (41 bp):
TGATTTTGCGTAAGACCATGTCTGGGAAGTTGGCATCGATT
Found at i:14089594 original size:42 final size:43
Alignment explanation
Indices: 14089512--14089615 Score: 124
Period size: 42 Copynumber: 2.4 Consensus size: 43
14089502 TCTGGGATGT
*
14089512 TGGCATCG-ATTTGAGATTTATGCGTAAGACCATGTTTGGGACA-
1 TGGCATCGTATTT--GATTTATGCGTAAGACCATGTCTGGGACAG
* *
14089555 TCGGCATCGTATTTGATTT-TGTGTAAGACCTTGTCTGGGACAG
1 T-GGCATCGTATTTGATTTATGCGTAAGACCATGTCTGGGACAG
14089598 TGGCATCGATATTTGATT
1 TGGCATCG-TATTTGATT
14089616 ACATGTAAGA
Statistics
Matches: 54, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
42 27 0.50
43 16 0.30
44 7 0.13
45 4 0.07
ACGTcount: A:0.22, C:0.14, G:0.27, T:0.37
Consensus pattern (43 bp):
TGGCATCGTATTTGATTTATGCGTAAGACCATGTCTGGGACAG
Found at i:14089625 original size:43 final size:42
Alignment explanation
Indices: 14089535--14089638 Score: 120
Period size: 43 Copynumber: 2.5 Consensus size: 42
14089525 AGATTTATGC
* ***
14089535 GTAAGACCATGTTTGGGACATCGGCATCGTATTTGATTTTGT
1 GTAAGACCATGTCTGGGACATCGGCATCGTATTTGATTACAT
*
14089577 GTAAGACCTTGTCTGGGACAGT-GGCATCGATATTTGATTACAT
1 GTAAGACCATGTCTGGGACA-TCGGCATCG-TATTTGATTACAT
* *
14089620 GTAAGACCACGTCTAGGAC
1 GTAAGACCATGTCTGGGAC
14089639 GTTGGTGTTG
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
42 25 0.48
43 27 0.52
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (42 bp):
GTAAGACCATGTCTGGGACATCGGCATCGTATTTGATTACAT
Done.