Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 43 of 235
Found at i:14092064 original size:61 final size:61
Alignment explanation
Indices: 14091931--14092067 Score: 195
Period size: 61 Copynumber: 2.2 Consensus size: 61
14091921 GCTTCTTTTG
* *
14091931 AATCGATTGTTATGGTAGAATACTACTTCTTATTCTTTTGAATCAATTGTTTATATGTTTA
1 AATCGATTGTTATGTTAGAATACTACATCTTATTCTTTTGAATCAATTGTTTATATGTTTA
* * * * *
14091992 AATTGATTGTTATGTTGGAATATTACATCTTCTTCTTTTGGATCAATTGTTTATATGTTTA
1 AATCGATTGTTATGTTAGAATACTACATCTTATTCTTTTGAATCAATTGTTTATATGTTTA
14092053 AATCG-TCTGTTATGT
1 AATCGAT-TGTTATGT
14092068 AGCATGTTTA
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
60 1 0.01
61 66 0.99
ACGTcount: A:0.26, C:0.09, G:0.15, T:0.50
Consensus pattern (61 bp):
AATCGATTGTTATGTTAGAATACTACATCTTATTCTTTTGAATCAATTGTTTATATGTTTA
Found at i:14092600 original size:16 final size:15
Alignment explanation
Indices: 14092579--14092610 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
14092569 TAATAATATG
14092579 TATAATTATTCTATTA
1 TATAATTATT-TATTA
14092595 TATAATTATTTATTA
1 TATAATTATTTATTA
14092610 T
1 T
14092611 CAATTTATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (15 bp):
TATAATTATTTATTA
Found at i:14098157 original size:10 final size:10
Alignment explanation
Indices: 14098090--14098157 Score: 72
Period size: 10 Copynumber: 6.9 Consensus size: 10
14098080 ATAATTATTT
14098090 TTTAAAAAT-
1 TTTAAAAATA
14098099 TTTAAAAAT-
1 TTTAAAAATA
14098108 TTTAAAAA-A
1 TTTAAAAATA
14098117 TTATAAAACATA
1 TT-TAAAA-ATA
*
14098129 -TAAAGAAATA
1 TTTAA-AAATA
14098139 TTTAAAAATA
1 TTTAAAAATA
14098149 TTTAAAAAT
1 TTTAAAAAT
14098158 TAATTAATTA
Statistics
Matches: 51, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
9 19 0.37
10 24 0.47
11 7 0.14
12 1 0.02
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (10 bp):
TTTAAAAATA
Found at i:14100323 original size:21 final size:19
Alignment explanation
Indices: 14100307--14100343 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
14100297 TGCAAAAGTA
*
14100307 ATATTTTTTATTTCAAAAT
1 ATATTTTTTATGTCAAAAT
*
14100326 TTATTTTTTATGTCAAAA
1 ATATTTTTTATGTCAAAA
14100344 ACATAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (19 bp):
ATATTTTTTATGTCAAAAT
Found at i:14102107 original size:28 final size:27
Alignment explanation
Indices: 14102074--14102150 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
14102064 AGAGCCATCA
*
14102074 AAATGAGAGTGTTTTGTAGTGTATCTTC
1 AAATGAGAGTGTTTTGTAGTGTAT-TGC
* * *
14102102 AAATGAG-TTTTTTTGTAGTGGATTGC
1 AAATGAGAGTGTTTTGTAGTGTATTGC
*
14102128 AAATGGGAGTGTTTTGTAGTGTA
1 AAATGAGAGTGTTTTGTAGTGTA
14102151 CAACCGAATT
Statistics
Matches: 40, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
26 8 0.20
27 25 0.62
28 7 0.17
ACGTcount: A:0.25, C:0.04, G:0.29, T:0.43
Consensus pattern (27 bp):
AAATGAGAGTGTTTTGTAGTGTATTGC
Found at i:14102578 original size:88 final size:89
Alignment explanation
Indices: 14102417--14102647 Score: 338
Period size: 88 Copynumber: 2.6 Consensus size: 89
14102407 TTTAAAAAAA
** *
14102417 TTGTATTATTTTTGTATCTGTAAATCAAATTTAGTCTGTATTATTTGTTGTTCGAATTTTATATT
1 TTGTATT-TTTTTGTATCTGTAAATTTAATTTAGTCTGTATTATTTGTTGTTTGAATTTTATATT
* ** *
14102482 TTCGTGTATTAATTTTTTAGAATGT
65 TTCATGTATTAAAATTTTAGAATAT
*
14102507 TTGTATTTTTTTGTATCTGTAAATTTAA-TTAGTTTGTATTATTTGTTGTTTGAATTTTATATTT
1 TTGTATTTTTTTGTATCTGTAAATTTAATTTAGTCTGTATTATTTGTTGTTTGAATTTTATATTT
14102571 TCATGTATTAAAATTTTAGAATAT
66 TCATGTATTAAAATTTTAGAATAT
** * *
14102595 TTGTATTTTTTTGGGTCTGTAAATTTAATTTAGTCCGTATTATTTGTTATTTG
1 TTGTATTTTTTTGTATCTGTAAATTTAATTTAGTCTGTATTATTTGTTGTTTG
14102648 TGTCGAAACC
Statistics
Matches: 127, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
88 80 0.63
89 40 0.31
90 7 0.06
ACGTcount: A:0.24, C:0.04, G:0.13, T:0.58
Consensus pattern (89 bp):
TTGTATTTTTTTGTATCTGTAAATTTAATTTAGTCTGTATTATTTGTTGTTTGAATTTTATATTT
TCATGTATTAAAATTTTAGAATAT
Found at i:14103635 original size:17 final size:17
Alignment explanation
Indices: 14103581--14103696 Score: 133
Period size: 17 Copynumber: 6.5 Consensus size: 17
14103571 TCATATATTT
14103581 TAAGATTGTATATCATATC
1 TAAGATTG--TATCATATC
*
14103600 TAAGATTGCAATCATATC
1 TAAGATTG-TATCATATC
*
14103618 TAAGATTGTATTATATC
1 TAAGATTGTATCATATC
**
14103635 TAAGATTACAATCATATC
1 TAAGATT-GTATCATATC
14103653 TAAGATTGTATCATATC
1 TAAGATTGTATCATATC
*
14103670 TAAGATTGCATATCACATC
1 TAAGATTG--TATCATATC
14103689 TAAGATTG
1 TAAGATTG
14103697 CATATCATTG
Statistics
Matches: 84, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
17 30 0.36
18 30 0.36
19 24 0.29
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (17 bp):
TAAGATTGTATCATATC
Found at i:14103640 original size:35 final size:35
Alignment explanation
Indices: 14103581--14103696 Score: 178
Period size: 35 Copynumber: 3.2 Consensus size: 35
14103571 TCATATATTT
14103581 TAAGATTGTATATCATATCTAAGATTGCAATCATATC
1 TAAGATTGTAT-T-ATATCTAAGATTGCAATCATATC
*
14103618 TAAGATTGTATTATATCTAAGATTACAATCATATC
1 TAAGATTGTATTATATCTAAGATTGCAATCATATC
* *
14103653 TAAGATTGTATCATATCTAAGATTGCATATCACATC
1 TAAGATTGTATTATATCTAAGATTGCA-ATCATATC
14103689 TAAGATTG
1 TAAGATTG
14103697 CATATCATTG
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
35 47 0.64
36 16 0.22
37 11 0.15
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (35 bp):
TAAGATTGTATTATATCTAAGATTGCAATCATATC
Found at i:14103859 original size:19 final size:20
Alignment explanation
Indices: 14103823--14103860 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14103813 TTGGACTTCG
**
14103823 TTTTTTTTTGGGGTTTATTA
1 TTTTTTTTTGGGACTTATTA
14103843 TTTTTTTTT-GGACTTATT
1 TTTTTTTTTGGGACTTATT
14103861 TCTGGGCCCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.11, C:0.03, G:0.16, T:0.71
Consensus pattern (20 bp):
TTTTTTTTTGGGACTTATTA
Found at i:14104555 original size:207 final size:207
Alignment explanation
Indices: 14104098--14104811 Score: 1223
Period size: 207 Copynumber: 3.5 Consensus size: 207
14104088 AAATCTGCTT
* * * * *
14104098 CTTCAATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACATAAACAC
* * * *
14104163 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATATT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * ** * *
14104228 GGATC-TGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATATGTTTGCCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
14104292 GGAGACGCCAAA
196 GGAGACGCCAAA
*
14104304 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACATAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACATAAACAC
14104369 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
14104434 GAATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCAAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
14104499 GGAGACGCCAAA
196 GGAGACGCCAAA
*
14104511 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACATAAACAC
14104576 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
14104641 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
14104706 GGAGACGCCAAA
196 GGAGACGCCAAA
* * *
14104718 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACATAAACAC
14104783 GTGAAAGCCAAATCAGCTATGTCTTCGAT
66 GTGAAAGCCAAATCAGCTATGTCTTCGAT
14104812 CTGCTCTCCG
Statistics
Matches: 481, Mismatches: 26, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
206 124 0.26
207 357 0.74
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (207 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACATAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
GGAGACGCCAAA
Found at i:14104933 original size:131 final size:118
Alignment explanation
Indices: 14104628--14104933 Score: 342
Period size: 131 Copynumber: 2.5 Consensus size: 118
14104618 GCACAAGGAT
* * *
14104628 GCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCC
1 GCCAAATCATCTTGGATC-TGCTTCAGCAT-AACACCTGAAGGCCAGATCTGCTATGTGTCTGCC
*
14104693 CTCCGTCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGAT
64 CTCCGTCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGAC
* * * * * * *
14104748 GCCAAATCATCTTAGATTTGCTTCATCATAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATC
1 GCCAAATCATCTTGGATCTGCTTCAGCATAA-CACCTGAAGGCCAGATCTGCTATG---T-G-TC
* *
14104813 TGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGA
60 TGCCCTCCGTCGAATATGGAGACGCCAAA-------CTTCGATTTGTTCTCTGACAATACAGAGA
14104878 C
118 C
*
14104879 GCCAAATCATCTTGGATCTGCTTCAGCGTGAACACCTGAAGGCCAGATCTGCTAT
1 GCCAAATCATCTTGGATCTGCTTCAGCAT-AACACCTGAAGGCCAGATCTGCTAT
14104934 ACTTTAACCT
Statistics
Matches: 151, Mismatches: 21, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
118 2 0.01
119 28 0.19
120 15 0.10
122 1 0.01
123 1 0.01
124 29 0.19
131 73 0.48
132 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (118 bp):
GCCAAATCATCTTGGATCTGCTTCAGCATAACACCTGAAGGCCAGATCTGCTATGTGTCTGCCCT
CCGTCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGAC
Found at i:14105037 original size:84 final size:86
Alignment explanation
Indices: 14104940--14105144 Score: 310
Period size: 87 Copynumber: 2.4 Consensus size: 86
14104930 CTATACTTTA
14104940 ACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCA-TC-T-TCGATCTGCTCCACTACTGCTTAG
1 ACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCAGTCGTCTCGATCTGCTCCACTACTGCTTAG
14105002 GGAGATAAGATCCGCAATTTT
66 GGAGATAAGATCCGCAATTTT
* * *
14105023 GACCTGTTACCCTACTGCTTAGGGGATTAAGGCG-AGTCGTCGTTGATCTGTTCCACTACTGCTT
1 -ACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCAGTCGTC-TCGATCTGCTCCACTACTGCTT
* *
14105087 AGGGAGATAAGATCTGTAATTTT
64 AGGGAGATAAGATCCGCAATTTT
14105110 AGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGC
1 A-CCTGTTACCCTACTGCTTAGGGGGTTAAGGCGC
14105145 TGAATTTTGT
Statistics
Matches: 109, Mismatches: 6, Indels: 8
0.89 0.05 0.07
Matches are distributed among these distances:
83 1 0.01
84 34 0.31
85 1 0.01
86 1 0.01
87 72 0.66
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.31
Consensus pattern (86 bp):
ACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCAGTCGTCTCGATCTGCTCCACTACTGCTTAG
GGAGATAAGATCCGCAATTTT
Found at i:14105128 original size:43 final size:42
Alignment explanation
Indices: 14104991--14105133 Score: 125
Period size: 43 Copynumber: 3.3 Consensus size: 42
14104981 ATCTGCTCCA
*
14104991 CTACTGCTTAGGGAGATAAGATCCGCAATTTT-GACCTGTTACC
1 CTACTGCTTAGGGAGATAAGAT-CGTAATTTTAG-CCTGTTACC
** * *
14105034 CTACTGCTTAGGG-GATTAAGGCGAGTCGT-CGTTGA-TCTGTT-CC
1 CTACTGCTTAGGGAGA-TAA---GA-TCGTAATTTTAGCCTGTTACC
14105077 ACTACTGCTTAGGGAGATAAGATCTGTAATTTTAGCCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATC-GTAATTTTAGCCTGTTACC
14105121 CTACTGCTTAGGG
1 CTACTGCTTAGGG
14105134 GGTTAAGGCG
Statistics
Matches: 79, Mismatches: 9, Indels: 24
0.71 0.08 0.21
Matches are distributed among these distances:
40 2 0.03
41 4 0.05
42 5 0.06
43 36 0.46
44 23 0.29
45 4 0.05
46 4 0.05
47 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.32
Consensus pattern (42 bp):
CTACTGCTTAGGGAGATAAGATCGTAATTTTAGCCTGTTACC
Found at i:14105151 original size:43 final size:43
Alignment explanation
Indices: 14104936--14105152 Score: 112
Period size: 43 Copynumber: 5.1 Consensus size: 43
14104926 TCTGCTATAC
*
14104936 TTTAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGC---AT
1 TTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCTGAAT
* * * * * * *
14104976 CTTCGATCTGCT-CCACTACTGCTTAGGGAGATAAGATC-C-GCAAT
1 TTTAG-CCTGTTACC-CTACTGCTTAGGGGGTTAAG-GCGCTG-AAT
* * ***
14105020 TTT-GACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCG
1 TTTAG-CCTGTTACCCTACTGCTTAGGGGGTTAAGGCG-CT-GAAT
* * * * **
14105065 TTGA-TCTGTT-CCACTACTGCTTAGGGAGATAA-GATCTGTAAT
1 TTTAGCCTGTTACC-CTACTGCTTAGGGGGTTAAGGCGCTG-AAT
14105107 TTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCTGAAT
1 TTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCTGAAT
14105150 TTT
1 TTT
14105153 GTAATTTTCA
Statistics
Matches: 124, Mismatches: 36, Indels: 31
0.65 0.19 0.16
Matches are distributed among these distances:
40 4 0.03
41 24 0.19
42 6 0.05
43 54 0.44
44 33 0.27
45 2 0.02
46 1 0.01
ACGTcount: A:0.21, C:0.22, G:0.24, T:0.33
Consensus pattern (43 bp):
TTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCTGAAT
Found at i:14106098 original size:16 final size:15
Alignment explanation
Indices: 14106073--14106127 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 15
14106063 GGCCTCTTCA
14106073 TTTTTCTTTTTCCTT
1 TTTTTCTTTTTCCTT
*
14106088 TTTTCTCTTTTTTCTT
1 TTTT-TCTTTTTCCTT
*
14106104 TTTATT-TTTTT-CTC
1 TTT-TTCTTTTTCCTT
14106118 TTTTTCTTTT
1 TTTTTCTTTT
14106128 ATTTTTTTGC
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
13 2 0.06
14 9 0.26
15 9 0.26
16 14 0.40
17 1 0.03
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTTCTTTTTCCTT
Found at i:14106105 original size:22 final size:22
Alignment explanation
Indices: 14106086--14106144 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
14106076 TTCTTTTTCC
*
14106086 TTTTTTCTCTTTTTTCTTTTTA
1 TTTTTTCTCTTTTTTCTTTTAA
*
14106108 TTTTTT-TCTCTTTTTCTTTTAT
1 TTTTTTCTCT-TTTTTCTTTTAA
14106130 TTTTTTGC-CTTTTTT
1 TTTTTT-CTCTTTTTT
14106145 TTTGAAATAG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
21 3 0.09
22 27 0.84
23 2 0.06
ACGTcount: A:0.03, C:0.14, G:0.02, T:0.81
Consensus pattern (22 bp):
TTTTTTCTCTTTTTTCTTTTAA
Found at i:14106128 original size:21 final size:21
Alignment explanation
Indices: 14106073--14106147 Score: 84
Period size: 21 Copynumber: 3.5 Consensus size: 21
14106063 GGCCTCTTCA
14106073 TTTTTCTTTT-TCCTTTTTTCTC
1 TTTTTCTTTTAT--TTTTTTCTC
14106095 TTTTTTCTTTTTATTTTTTTCTC
1 -TTTTTC-TTTTATTTTTTTCTC
14106118 TTTTTCTTTTATTTTTTTGC-C
1 TTTTTCTTTTATTTTTTT-CTC
14106139 TTTTT-TTTT
1 TTTTTCTTTT
14106148 GAAATAGAAG
Statistics
Matches: 49, Mismatches: 0, Indels: 9
0.84 0.00 0.16
Matches are distributed among these distances:
20 4 0.08
21 18 0.37
22 7 0.14
23 15 0.31
24 4 0.08
25 1 0.02
ACGTcount: A:0.03, C:0.15, G:0.01, T:0.81
Consensus pattern (21 bp):
TTTTTCTTTTATTTTTTTCTC
Found at i:14111947 original size:17 final size:18
Alignment explanation
Indices: 14111896--14112019 Score: 171
Period size: 17 Copynumber: 6.8 Consensus size: 18
14111886 TCATATCTTT
*
14111896 TAAGATTGTATATCATATC
1 TAAGATTG-CTATCATATC
*
14111915 TAAGATTGCAATCATATC
1 TAAGATTGCTATCATATC
14111933 TAAGATTG-TATCATATC
1 TAAGATTGCTATCATATC
*
14111950 TAAGATTGCAATCATATC
1 TAAGATTGCTATCATATC
14111968 TAAGATTG-TATCATATC
1 TAAGATTGCTATCATATC
*
14111985 TAAGATTGCATATCACATC
1 TAAGATTGC-TATCATATC
14112004 TAAGATTGCATATCAT
1 TAAGATTGC-TATCAT
14112020 TGAAGATTAT
Statistics
Matches: 95, Mismatches: 7, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
17 32 0.34
18 32 0.34
19 31 0.33
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (18 bp):
TAAGATTGCTATCATATC
Found at i:14111951 original size:35 final size:35
Alignment explanation
Indices: 14111896--14112011 Score: 196
Period size: 35 Copynumber: 3.2 Consensus size: 35
14111886 TCATATCTTT
14111896 TAAGATTGTATATCATATCTAAGATTGCAATCATATC
1 TAAGATTG--TATCATATCTAAGATTGCAATCATATC
14111933 TAAGATTGTATCATATCTAAGATTGCAATCATATC
1 TAAGATTGTATCATATCTAAGATTGCAATCATATC
*
14111968 TAAGATTGTATCATATCTAAGATTGCATATCACATC
1 TAAGATTGTATCATATCTAAGATTGCA-ATCATATC
14112004 TAAGATTG
1 TAAGATTG
14112012 CATATCATTG
Statistics
Matches: 77, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
35 54 0.70
36 15 0.19
37 8 0.10
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (35 bp):
TAAGATTGTATCATATCTAAGATTGCAATCATATC
Found at i:14114091 original size:19 final size:18
Alignment explanation
Indices: 14114054--14114106 Score: 65
Period size: 18 Copynumber: 2.9 Consensus size: 18
14114044 TAATTAAAAC
*
14114054 TTTATTTTG-AATGTCAA
1 TTTATTTTGTAATTTCAA
14114071 TTTTATTTTGTAATTTCAA
1 -TTTATTTTGTAATTTCAA
14114090 TTTATTTT-TAAATTTCA
1 TTTATTTTGT-AATTTCA
14114107 TTTGAATTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
17 1 0.03
18 24 0.75
19 7 0.22
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.60
Consensus pattern (18 bp):
TTTATTTTGTAATTTCAA
Found at i:14114103 original size:18 final size:18
Alignment explanation
Indices: 14114040--14114106 Score: 64
Period size: 18 Copynumber: 3.7 Consensus size: 18
14114030 ATTTCACTTT
** *
14114040 TTTTTAATTAAAACTTTA
1 TTTTTAATTTCAATTTTA
* *
14114058 TTTTGAATGTCAATTTTA
1 TTTTTAATTTCAATTTTA
14114076 TTTTGTAATTTCAA-TTTA
1 TTTT-TAATTTCAATTTTA
14114094 TTTTTAAATTTCA
1 TTTTT-AATTTCA
14114107 TTTGAATTTA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
17 1 0.03
18 32 0.80
19 7 0.17
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.58
Consensus pattern (18 bp):
TTTTTAATTTCAATTTTA
Found at i:14114310 original size:116 final size:112
Alignment explanation
Indices: 14114037--14114336 Score: 288
Period size: 116 Copynumber: 2.6 Consensus size: 112
14114027 TTCATTTCAC
*
14114037 TTTTTTTTAATTAAAACTTTATTTTGAATGTCAATTTTATTTTGTAATTTCAATTTATTTTTAAA
1 TTTTTTTTAATTAAAAC-TTATTTTGAATGTCAA--TT-TTTT-TCATTTCAATTT-TTTTTAAA
* *
14114102 TTTCATTTGAATTTAATTTTTTTTCTCATGTTATTTGAATTTCATTTCATTTT
60 TTTCATTTGAAGTTAATTTTTTTTCTCATGTTATTTAAATTTCATTTCATTTT
* * ** *
14114155 TTATTTTTAATTAAAAAATTCATTTTCTCATGTCGATTTTTTTCATTTCAATTTCTTTTTAAATT
1 TTTTTTTTAATT-AAAACTT-ATTTT-GAATGTCAATTTTTTTCATTTCAATTT-TTTTTAAATT
* * * *
14114220 TCATTTGAAGTTCA-TTTTTTTCTCATTTTCTTTAAATTTCATTTTACTTTTTTT
62 TCATTTGAAGTTAATTTTTTTTCTCATGTTATTTAAATTTCA-TTT-C--ATTTT
* * *
14114274 TTCTTTTTTAATTAAAACTTAGTTTGAATTTC-ATTTTTTTC---TC-ATTTTCTTTAAATTTCA
1 TT-TTTTTTAATTAAAACTTATTTTGAATGTCAATTTTTTTCATTTCAATTTTTTTTAAATTTCA
14114334 TTT
65 TTT
14114337 TACTTTTTTT
Statistics
Matches: 154, Mismatches: 20, Indels: 23
0.78 0.10 0.12
Matches are distributed among these distances:
111 15 0.10
112 4 0.03
113 2 0.01
115 24 0.16
116 45 0.29
117 9 0.06
118 19 0.12
119 21 0.14
120 15 0.10
ACGTcount: A:0.25, C:0.10, G:0.04, T:0.62
Consensus pattern (112 bp):
TTTTTTTTAATTAAAACTTATTTTGAATGTCAATTTTTTTCATTTCAATTTTTTTTAAATTTCAT
TTGAAGTTAATTTTTTTTCTCATGTTATTTAAATTTCATTTCATTTT
Found at i:14114312 original size:73 final size:73
Alignment explanation
Indices: 14114223--14114409 Score: 347
Period size: 73 Copynumber: 2.6 Consensus size: 73
14114213 TTAAATTTCA
*
14114223 TTTGAAGTTCATTTTTTTCTCATTTTCTTTAAATTTCATTTTACTTTTTTTTTCTTTTTTAATTA
1 TTTGAATTTCATTTTTTTCTCATTTTCTTTAAATTTCATTTTACTTTTTTTTTCTTTTTTAATTA
14114288 AAACTTAG
66 AAACTTAG
14114296 TTTGAATTTCATTTTTTTCTCATTTTCTTTAAATTTCATTTTACTTTTTTTTTCTTTTTTAATTA
1 TTTGAATTTCATTTTTTTCTCATTTTCTTTAAATTTCATTTTACTTTTTTTTTCTTTTTTAATTA
14114361 AAACTTAG
66 AAACTTAG
* *
14114369 TTTGAATTTCATTTTTTTCTCATTTTATTTGAATTTCATTT
1 TTTGAATTTCATTTTTTTCTCATTTTCTTTAAATTTCATTT
14114410 CAATTTGAAC
Statistics
Matches: 111, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 111 1.00
ACGTcount: A:0.21, C:0.11, G:0.04, T:0.64
Consensus pattern (73 bp):
TTTGAATTTCATTTTTTTCTCATTTTCTTTAAATTTCATTTTACTTTTTTTTTCTTTTTTAATTA
AAACTTAG
Found at i:14114417 original size:17 final size:17
Alignment explanation
Indices: 14114395--14114428 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
14114385 TTCTCATTTT
*
14114395 ATTTGAATTTCATTTCA
1 ATTTGAACTTCATTTCA
14114412 ATTTGAACTTCATTTCA
1 ATTTGAACTTCATTTCA
14114429 CCTTTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.15, G:0.06, T:0.50
Consensus pattern (17 bp):
ATTTGAACTTCATTTCA
Found at i:14114807 original size:6 final size:6
Alignment explanation
Indices: 14114794--14114863 Score: 53
Period size: 6 Copynumber: 12.7 Consensus size: 6
14114784 TTAATTATAT
* * *
14114794 TTTC-A TTTCAA TTTCTA -TTCAA TTTGAA TTTC-A TTT-TA TTTCAA
1 TTTCAA TTTCAA TTTCAA TTTCAA TTTCAA TTTCAA TTTCAA TTTCAA
* *
14114838 TTTCAA TTT-TA TTT-TA TTTCAA TTTC
1 TTTCAA TTTCAA TTTCAA TTTCAA TTTC
14114864 TTTTTAAATA
Statistics
Matches: 53, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
5 25 0.47
6 28 0.53
ACGTcount: A:0.26, C:0.13, G:0.01, T:0.60
Consensus pattern (6 bp):
TTTCAA
Found at i:14114836 original size:22 final size:22
Alignment explanation
Indices: 14114794--14114863 Score: 90
Period size: 22 Copynumber: 3.2 Consensus size: 22
14114784 TTAATTATAT
14114794 TTTC-ATTTCAATTTCTA-TTCAA
1 TTTCAATTTC-ATTT-TATTTCAA
*
14114816 TTTGAATTTCATTTTATTTCAA
1 TTTCAATTTCATTTTATTTCAA
*
14114838 TTTCAATTTTATTTTATTTCAA
1 TTTCAATTTCATTTTATTTCAA
14114860 TTTC
1 TTTC
14114864 TTTTTAAATA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
21 2 0.05
22 36 0.84
23 5 0.12
ACGTcount: A:0.26, C:0.13, G:0.01, T:0.60
Consensus pattern (22 bp):
TTTCAATTTCATTTTATTTCAA
Found at i:14114856 original size:16 final size:17
Alignment explanation
Indices: 14114792--14114862 Score: 74
Period size: 16 Copynumber: 4.2 Consensus size: 17
14114782 CTTTAATTAT
*
14114792 ATTTTCATTTCAATTTCT
1 ATTTT-ATTTCAATTTCA
** *
14114810 ATTCAATTTGAATTTC-
1 ATTTTATTTCAATTTCA
14114826 ATTTTATTTCAATTTCA
1 ATTTTATTTCAATTTCA
*
14114843 ATTTTATTT-TATTTCA
1 ATTTTATTTCAATTTCA
14114859 ATTT
1 ATTT
14114863 CTTTTTAAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
16 23 0.51
17 19 0.42
18 3 0.07
ACGTcount: A:0.27, C:0.11, G:0.01, T:0.61
Consensus pattern (17 bp):
ATTTTATTTCAATTTCA
Found at i:14115015 original size:23 final size:22
Alignment explanation
Indices: 14114989--14115037 Score: 80
Period size: 23 Copynumber: 2.2 Consensus size: 22
14114979 ATATAATTAC
*
14114989 ATTTTATTTTCATTTCATTTCCA
1 ATTTTAATTTCATTTCATTT-CA
14115012 ATTTTAATTTCATTTCATTTCA
1 ATTTTAATTTCATTTCATTTCA
14115034 ATTT
1 ATTT
14115038 CTTTTTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 6 0.24
23 19 0.76
ACGTcount: A:0.24, C:0.14, G:0.00, T:0.61
Consensus pattern (22 bp):
ATTTTAATTTCATTTCATTTCA
Found at i:14116760 original size:44 final size:44
Alignment explanation
Indices: 14116696--14116779 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
14116686 TTAATTGGGT
* *
14116696 ACTTAGTGTGCGAAATTGAGATAGCTTATG-TTACATATATTTGC
1 ACTTAGTATGCGAAACTGAGATAGCTT-TGATTACATATATTTGC
* *
14116740 ACTTAGTATGCGAGACTGAGATAGCTTTGATTATATATAT
1 ACTTAGTATGCGAAACTGAGATAGCTTTGATTACATATAT
14116780 ACATTGGCAC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 2 0.06
44 33 0.94
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (44 bp):
ACTTAGTATGCGAAACTGAGATAGCTTTGATTACATATATTTGC
Found at i:14124567 original size:2 final size:2
Alignment explanation
Indices: 14124560--14124586 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
14124550 TTTTTCAACT
14124560 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
14124587 TATGTGATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14126713 original size:24 final size:25
Alignment explanation
Indices: 14126664--14126717 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
14126654 TATAGAGTTT
*
14126664 TTCCTTTTTCTTTCTTTTCTCTTCC
1 TTCCTTTTTCTTTCTATTCTCTTCC
*
14126689 TTCCTTTTTTTTTC-ATTCGTC-TCC
1 TTCCTTTTTCTTTCTATTC-TCTTCC
14126713 TTCCT
1 TTCCT
14126718 CCTCTCTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 11 0.42
25 15 0.58
ACGTcount: A:0.02, C:0.31, G:0.02, T:0.65
Consensus pattern (25 bp):
TTCCTTTTTCTTTCTATTCTCTTCC
Found at i:14127551 original size:35 final size:35
Alignment explanation
Indices: 14127455--14127659 Score: 214
Period size: 35 Copynumber: 5.8 Consensus size: 35
14127445 AAAAAAATTA
* *
14127455 CCTTAGACGTGTCTATCCCAACCTTTTTAAGGATG
1 CCTTAGACGAGTCTATCCCAACCTTTTTAAGGTTG
* * ** *
14127490 CCTTAGACAAGGCTTATTTCAACTTTTTTAA-GTTG
1 CCTTAGACGAGTC-TATCCCAACCTTTTTAAGGTTG
* * * *
14127525 CCTTAGACGAGTCTATTCTAATCTTTTTTAAAGGTTA
1 CCTTAGACGAGTCTATCCCAA-CCTTTTT-AAGGTTG
* * *
14127562 CTTTAGACAAGGTTTATCCCAACCTTTTTAAGGTTG
1 CCTTAGACGA-GTCTATCCCAACCTTTTTAAGGTTG
* *
14127598 TCTTAGACGGGTCTATCCCAACCTTTTTAAGGTTG
1 CCTTAGACGAGTCTATCCCAACCTTTTTAAGGTTG
*
14127633 TCTTAGACGAGTCTATCCCAACCTTTT
1 CCTTAGACGAGTCTATCCCAACCTTTT
14127660 GTAAATGTCA
Statistics
Matches: 140, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
34 6 0.04
35 81 0.58
36 28 0.20
37 17 0.12
38 8 0.06
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (35 bp):
CCTTAGACGAGTCTATCCCAACCTTTTTAAGGTTG
Found at i:14127659 original size:108 final size:108
Alignment explanation
Indices: 14127468--14127664 Score: 263
Period size: 108 Copynumber: 1.8 Consensus size: 108
14127458 TAGACGTGTC
** *
14127468 TATCCCAACCTTTTTAAGGATGCCTTAGACAAGGCTTATTTCAACTTTTTTAAGTTGCCTTAGAC
1 TATCCCAACCTTTTTAAGGATGCCTTAGACAAGGCTTATCCCAACCTTTTTAAGTTGCCTTAGAC
* * * *
14127533 GAGTCTATTCTAATCTTTTTTAAAGGTTACTTTAGACAAGGTT
66 GAGTCTATCCCAACCTTTTGTAAAGGTTACTTTAGACAAGGTT
* * * *
14127576 TATCCCAACCTTTTTAAGGTTGTCTTAGAC--GGGTCTATCCCAACCTTTTTAAGGTTGTCTTAG
1 TATCCCAACCTTTTTAAGGATGCCTTAGACAAGGCT-TATCCCAACCTTTTTAA-GTTGCCTTAG
14127639 ACGAGTCTATCCCAACCTTTTGTAAA
64 ACGAGTCTATCCCAACCTTTTGTAAA
14127665 TGTCAGCATT
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
106 3 0.04
107 14 0.18
108 59 0.78
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.39
Consensus pattern (108 bp):
TATCCCAACCTTTTTAAGGATGCCTTAGACAAGGCTTATCCCAACCTTTTTAAGTTGCCTTAGAC
GAGTCTATCCCAACCTTTTGTAAAGGTTACTTTAGACAAGGTT
Found at i:14128965 original size:31 final size:31
Alignment explanation
Indices: 14128927--14128986 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
14128917 TAACTGAAGT
14128927 ATAATTCAAAATATTCTTACAATAATGTTAA
1 ATAATTCAAAATATTCTTACAATAATGTTAA
14128958 ATAATTCAAAATATTCTTACAATAATGTT
1 ATAATTCAAAATATTCTTACAATAATGTT
14128987 TAAAGTTACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.47, C:0.10, G:0.03, T:0.40
Consensus pattern (31 bp):
ATAATTCAAAATATTCTTACAATAATGTTAA
Found at i:14130202 original size:27 final size:27
Alignment explanation
Indices: 14130119--14130214 Score: 88
Period size: 27 Copynumber: 3.5 Consensus size: 27
14130109 GAATATCCAA
* *
14130119 CCCAAACACACTCAGAATAATATAAATCCT
1 CCCAAACACAC-CAGTAT-AT-TATATCCT
* * *
14130149 -CCATAACAC-CTAGTATAATATAGCCT
1 CCCA-AACACACCAGTATATTATATCCT
14130175 CCCAAACACACCAGTATATTATATCCT
1 CCCAAACACACCAGTATATTATATCCT
*
14130202 CCCTAACACACCA
1 CCCAAACACACCA
14130215 ATAAGGCATT
Statistics
Matches: 54, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
26 11 0.20
27 30 0.56
28 4 0.07
29 4 0.07
30 5 0.09
ACGTcount: A:0.41, C:0.33, G:0.04, T:0.22
Consensus pattern (27 bp):
CCCAAACACACCAGTATATTATATCCT
Found at i:14130607 original size:13 final size:13
Alignment explanation
Indices: 14130589--14130615 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14130579 ACGCGTTTAC
14130589 TCCTCAACGATCT
1 TCCTCAACGATCT
14130602 TCCTCAACGATCT
1 TCCTCAACGATCT
14130615 T
1 T
14130616 TTCTTTTCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.37, G:0.07, T:0.33
Consensus pattern (13 bp):
TCCTCAACGATCT
Found at i:14130758 original size:17 final size:18
Alignment explanation
Indices: 14130728--14130761 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14130718 AATTTTTATT
*
14130728 CAATTTATTCCCTAATTC
1 CAATTTAATCCCTAATTC
14130746 CAATTTAAT-CCTAATT
1 CAATTTAATCCCTAATT
14130762 AACTCTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.32, C:0.24, G:0.00, T:0.44
Consensus pattern (18 bp):
CAATTTAATCCCTAATTC
Found at i:14131396 original size:3 final size:3
Alignment explanation
Indices: 14131388--14131432 Score: 63
Period size: 3 Copynumber: 14.7 Consensus size: 3
14131378 ATCAAATAGA
* *
14131388 AAT AAT AAT AAT AAT AAC AAT AAT AAC AAT AAT AAT AATT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AA
14131433 AATCTAAGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
3 34 0.92
4 3 0.08
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:14137254 original size:18 final size:18
Alignment explanation
Indices: 14137227--14137467 Score: 112
Period size: 18 Copynumber: 13.9 Consensus size: 18
14137217 GATATTTATT
*
14137227 TATGTTAGTTATGTAAAA
1 TATGTAAGTTATGTAAAA
*
14137245 AATGTAAGTTATG-AAAA
1 TATGTAAGTTATGTAAAA
14137262 TTATGTAAGTTATG-----
1 -TATGTAAGTTATGTAAAA
14137276 TA---AA-TTATGTAAAA
1 TATGTAAGTTATGTAAAA
* *
14137290 AATGTAAGTTACG-AAAA
1 TATGTAAGTTATGTAAAA
* *
14137307 TTATGTAAATTATGTAAAT
1 -TATGTAAGTTATGTAAAA
*
14137326 TATGTAAGTTATGTAAAT
1 TATGTAAGTTATGTAAAA
**
14137344 TATGTAAGTTATGTAAGT
1 TATGTAAGTTATGTAAAA
* * * **
14137362 TATGATATGATATAT-ATT
1 TATG-TAAGTTATGTAAAA
* **
14137380 TATATAAGTTATGTAAGT
1 TATGTAAGTTATGTAAAA
* * **
14137398 TATGTATGTTATGTGAGG
1 TATGTAAGTTATGTAAAA
**
14137416 TATGTAAGTTATGATATGA
1 TATGTAAGTTATG-TAAAA
* * **
14137435 TATAT-ATTTATGTAAGG
1 TATGTAAGTTATGTAAAA
14137452 TATGTAAGTTATGTAA
1 TATGTAAGTTATGTAA
14137468 TTTTAAAGAA
Statistics
Matches: 173, Mismatches: 34, Indels: 32
0.72 0.14 0.13
Matches are distributed among these distances:
9 5 0.03
10 2 0.01
13 2 0.01
14 1 0.01
17 24 0.14
18 123 0.71
19 16 0.09
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.42
Consensus pattern (18 bp):
TATGTAAGTTATGTAAAA
Found at i:14137265 original size:9 final size:9
Alignment explanation
Indices: 14137235--14137365 Score: 145
Period size: 9 Copynumber: 14.6 Consensus size: 9
14137225 TTTATGTTAG
14137235 TTATGTAAA
1 TTATGTAAA
** *
14137244 AAATGTAAG
1 TTATGTAAA
*
14137253 TTATGAAAA
1 TTATGTAAA
*
14137262 TTATGTAAG
1 TTATGTAAA
14137271 TTATGTAAA
1 TTATGTAAA
14137280 TTATGTAAA
1 TTATGTAAA
** *
14137289 AAATGTAAG
1 TTATGTAAA
* *
14137298 TTACGAAAA
1 TTATGTAAA
14137307 TTATGTAAA
1 TTATGTAAA
14137316 TTATGTAAA
1 TTATGTAAA
*
14137325 TTATGTAAG
1 TTATGTAAA
14137334 TTATGTAAA
1 TTATGTAAA
*
14137343 TTATGTAAG
1 TTATGTAAA
*
14137352 TTATGTAAG
1 TTATGTAAA
14137361 TTATG
1 TTATG
14137366 ATATGATATA
Statistics
Matches: 99, Mismatches: 23, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 99 1.00
ACGTcount: A:0.44, C:0.01, G:0.16, T:0.40
Consensus pattern (9 bp):
TTATGTAAA
Found at i:14137265 original size:27 final size:27
Alignment explanation
Indices: 14137246--14137411 Score: 156
Period size: 27 Copynumber: 6.1 Consensus size: 27
14137236 TATGTAAAAA
14137246 ATGTAAGTTATGAAAATTATGTAAGTT
1 ATGTAAGTTATGAAAATTATGTAAGTT
* *
14137273 ATGTAAATTATGTAAAA-AATGTAAGTT
1 ATGTAAGTTATG-AAAATTATGTAAGTT
* * * * *
14137300 ACGAAAATTATGTAAATTATGTAAATT
1 ATGTAAGTTATGAAAATTATGTAAGTT
*
14137327 ATGTAAGTTATGTAAATTATGTAAGTT
1 ATGTAAGTTATGAAAATTATGTAAGTT
* * * *
14137354 ATGTAAGTTATG-ATATGATATATATTT
1 ATGTAAGTTATGAAAATTATGTA-AGTT
* * * *
14137381 ATATAAGTTATGTAAGTTATGTATGTT
1 ATGTAAGTTATGAAAATTATGTAAGTT
14137408 ATGT
1 ATGT
14137412 GAGGTATGTA
Statistics
Matches: 112, Mismatches: 23, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
26 10 0.09
27 92 0.82
28 10 0.09
ACGTcount: A:0.40, C:0.01, G:0.16, T:0.43
Consensus pattern (27 bp):
ATGTAAGTTATGAAAATTATGTAAGTT
Found at i:14137358 original size:63 final size:63
Alignment explanation
Indices: 14137253--14137467 Score: 261
Period size: 63 Copynumber: 3.4 Consensus size: 63
14137243 AAAATGTAAG
* * * * * * * *
14137253 TTATGAAAATTATGTAAGTTATGTAAATTATGTAAAAAATGTAAGTTACGAAAATTATGTA-AA
1 TTATGTAAATTATGTAAGTTATGTAAATTATGTAAGATATGTAAGTTATG-ATATGATATATAT
*
14137316 TTATGTAAATTATGTAAGTTATGTAAATTATGTAAGTTATGTAAGTTATGATATGATATATAT
1 TTATGTAAATTATGTAAGTTATGTAAATTATGTAAGATATGTAAGTTATGATATGATATATAT
* * ** * *
14137379 TTATATAAGTTATGTAAGTTATGTATGTTATGTGAGGTATGTAAGTTATGATATGATATATAT
1 TTATGTAAATTATGTAAGTTATGTAAATTATGTAAGATATGTAAGTTATGATATGATATATAT
**
14137442 TTATGTAAGGTATGTAAGTTATGTAA
1 TTATGTAAATTATGTAAGTTATGTAA
14137468 TTTTAAAGAA
Statistics
Matches: 133, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
62 7 0.05
63 126 0.95
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.43
Consensus pattern (63 bp):
TTATGTAAATTATGTAAGTTATGTAAATTATGTAAGATATGTAAGTTATGATATGATATATAT
Found at i:14137391 original size:9 final size:9
Alignment explanation
Indices: 14137379--14137467 Score: 81
Period size: 9 Copynumber: 9.9 Consensus size: 9
14137369 TGATATATAT
*
14137379 TTATATAAG
1 TTATGTAAG
14137388 TTATGTAAG
1 TTATGTAAG
*
14137397 TTATGTATG
1 TTATGTAAG
*
14137406 TTATGTGAG
1 TTATGTAAG
*
14137415 GTATGTAAG
1 TTATGTAAG
*
14137424 TTATGATATG
1 TTATG-TAAG
* * *
14137434 ATATAT-AT
1 TTATGTAAG
14137442 TTATGTAAG
1 TTATGTAAG
*
14137451 GTATGTAAG
1 TTATGTAAG
14137460 TTATGTAA
1 TTATGTAA
14137468 TTTTAAAGAA
Statistics
Matches: 61, Mismatches: 17, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
8 4 0.07
9 51 0.84
10 6 0.10
ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45
Consensus pattern (9 bp):
TTATGTAAG
Found at i:14140092 original size:238 final size:238
Alignment explanation
Indices: 14139669--14140107 Score: 566
Period size: 240 Copynumber: 1.8 Consensus size: 238
14139659 AAACGGCGAT
* * *
14139669 GTTTTAATTAAACTAACATGTTTTTGTGGCGTTTTTTAAAAAGCGCCACTAAAGGTCTATCTATT
1 GTTTTAATTAAACTAAAATGTTTTTGTGGCGTTTTCTAAAAAGCGCCACTAAAGGTCGATCTATT
**
14139734 GCGGCGTTTTTTATAAAGCACCGCTAAAGCCACTAAAGATGCAAATTTGAACGGCGTCGTTTTAC
66 GCGGCGTTTTTTATAAAGCACCGCTAAAGCCACTAAAGATGCAAATTAAAACGGCGTCGTTTTAC
** * *
14139799 TTAAAGTAAATTATTTTTTGCGGTGTTTTTCTACCTAGCACCGCTAATTCTCGATCTATTACGGT
131 TTAAAGTAAATTATTTCGTGCGGTGTTTTTCTACCAAGCACCGCTAATACTCGATCTATTACGGT
14139864 GTTTTTCATGTAGCGCCGCTAATTCCCTACCTAAACTAATGTC
196 GTTTTTCATGTAGCGCCGCTAATTCCCTACCTAAACTAATGTC
* * * * *
14139907 GTTTTAATTAAAGTAAAATGTTTTTTTGTGGCGTTTTCTCAAAAGTGCCACTGAAGGTCGATCTT
1 GTTTTAATTAAACTAAAATG--TTTTTGTGGCGTTTTCTAAAAAGCGCCACTAAAGGTCGATCTA
* * * * *
14139972 TTGCGGCTTTTTTTA-AAAGGCGCCGTTAAAGCCACTAAAGATGCAACTTAAAACGGTG-CAGTT
64 TTGCGGCGTTTTTTATAAA-GCACCGCTAAAGCCACTAAAGATGCAAATTAAAACGGCGTC-GTT
* * *
14140035 TT-TTTAAAGTAAATTGTTTCGTG-GGCT-TTTTT-TAACCAAGCGCCGCTAATACTCGATCTAT
127 TTACTTAAAGTAAATTATTTCGTGCGG-TGTTTTTCT-ACCAAGCACCGCTAATACTCGATCTAT
**
14140096 TGTGGTGTTTTT
190 TACGGTGTTTTT
14140108 TGCCTAGTGC
Statistics
Matches: 171, Mismatches: 24, Indels: 12
0.83 0.12 0.06
Matches are distributed among these distances:
237 1 0.01
238 59 0.35
239 22 0.13
240 89 0.52
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (238 bp):
GTTTTAATTAAACTAAAATGTTTTTGTGGCGTTTTCTAAAAAGCGCCACTAAAGGTCGATCTATT
GCGGCGTTTTTTATAAAGCACCGCTAAAGCCACTAAAGATGCAAATTAAAACGGCGTCGTTTTAC
TTAAAGTAAATTATTTCGTGCGGTGTTTTTCTACCAAGCACCGCTAATACTCGATCTATTACGGT
GTTTTTCATGTAGCGCCGCTAATTCCCTACCTAAACTAATGTC
Found at i:14140468 original size:14 final size:14
Alignment explanation
Indices: 14140418--14140473 Score: 58
Period size: 14 Copynumber: 4.0 Consensus size: 14
14140408 AACCTTGAAG
*
14140418 CTTAAACCCTAGAC
1 CTTAAACCCTAAAC
* *
14140432 CTTAAACCCAAAAT
1 CTTAAACCCTAAAC
** *
14140446 AATATACCCTAAAC
1 CTTAAACCCTAAAC
14140460 CTTAAACCCTAAAC
1 CTTAAACCCTAAAC
14140474 TATACACTTC
Statistics
Matches: 31, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.45, C:0.32, G:0.02, T:0.21
Consensus pattern (14 bp):
CTTAAACCCTAAAC
Found at i:14140693 original size:21 final size:20
Alignment explanation
Indices: 14140669--14140714 Score: 65
Period size: 22 Copynumber: 2.2 Consensus size: 20
14140659 CACTAAGACC
14140669 CTAACCATAAATCTTAAAACA
1 CTAACCATAAATC-TAAAACA
*
14140690 CTAAACCATAAATCTAAAATA
1 CT-AACCATAAATCTAAAACA
14140711 CTAA
1 CTAA
14140715 ACATTAAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 2 0.09
21 10 0.43
22 11 0.48
ACGTcount: A:0.54, C:0.22, G:0.00, T:0.24
Consensus pattern (20 bp):
CTAACCATAAATCTAAAACA
Found at i:14140715 original size:21 final size:22
Alignment explanation
Indices: 14140671--14140716 Score: 76
Period size: 21 Copynumber: 2.1 Consensus size: 22
14140661 CTAAGACCCT
14140671 AACCATAAATCTTAAAACACTA
1 AACCATAAATCTTAAAACACTA
*
14140693 AACCATAAATC-TAAAATACTA
1 AACCATAAATCTTAAAACACTA
14140714 AAC
1 AAC
14140717 ATTAAGCCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.57, C:0.22, G:0.00, T:0.22
Consensus pattern (22 bp):
AACCATAAATCTTAAAACACTA
Found at i:14140735 original size:7 final size:7
Alignment explanation
Indices: 14140723--14140773 Score: 57
Period size: 7 Copynumber: 7.1 Consensus size: 7
14140713 AAACATTAAG
14140723 CCATAAA
1 CCATAAA
14140730 CCATAAA
1 CCATAAA
*
14140737 CCCTAAAA
1 CCAT-AAA
14140745 CCATAAA
1 CCATAAA
*
14140752 CCATAGA
1 CCATAAA
*
14140759 CCTTAAA
1 CCATAAA
*
14140766 CCTTAAA
1 CCATAAA
14140773 C
1 C
14140774 ATTAAATCTT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
7 32 0.84
8 6 0.16
ACGTcount: A:0.49, C:0.31, G:0.02, T:0.18
Consensus pattern (7 bp):
CCATAAA
Found at i:14140800 original size:21 final size:22
Alignment explanation
Indices: 14140723--14140800 Score: 81
Period size: 21 Copynumber: 3.6 Consensus size: 22
14140713 AAACATTAAG
*
14140723 CCATAAACCATAAACCCTAAAA
1 CCATAAACCATAAACCTTAAAA
*
14140745 CCATAAACCATAGACCTT-AAA
1 CCATAAACCATAAACCTTAAAA
* *
14140766 CCTTAAA-CATTAAATCTTAAAA
1 CCATAAACCA-TAAACCTTAAAA
*
14140788 CC-TAAACCCTAAA
1 CCATAAACCATAAA
14140801 ATAAAATTAC
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
20 2 0.04
21 23 0.49
22 22 0.47
ACGTcount: A:0.50, C:0.28, G:0.01, T:0.21
Consensus pattern (22 bp):
CCATAAACCATAAACCTTAAAA
Found at i:14140801 original size:14 final size:15
Alignment explanation
Indices: 14140727--14140801 Score: 59
Period size: 14 Copynumber: 5.2 Consensus size: 15
14140717 ATTAAGCCAT
14140727 AAACCATAAACCCTA
1 AAACCATAAACCCTA
*
14140742 AAACCATAAACCAT-
1 AAACCATAAACCCTA
* * *
14140756 AGACCTTAAA-CCTT
1 AAACCATAAACCCTA
* *
14140770 AAA-CATTAAATCTTA
1 AAACCA-TAAACCCTA
14140785 AAACC-TAAACCCTA
1 AAACCATAAACCCTA
14140799 AAA
1 AAA
14140802 TAAAATTACT
Statistics
Matches: 46, Mismatches: 10, Indels: 9
0.71 0.15 0.14
Matches are distributed among these distances:
13 3 0.07
14 24 0.52
15 18 0.39
16 1 0.02
ACGTcount: A:0.52, C:0.27, G:0.01, T:0.20
Consensus pattern (15 bp):
AAACCATAAACCCTA
Found at i:14140906 original size:40 final size:41
Alignment explanation
Indices: 14140823--14140974 Score: 191
Period size: 41 Copynumber: 3.7 Consensus size: 41
14140813 TTTTTTTGCG
* * * *
14140823 GCCACTACTGCTTGGCCTTTTGCGGTGTTTTTACCATAAAC
1 GCCACTAATGCTTGACCTTTTGCGGCGTTTTTATCATAAAC
* * *
14140864 GCCCCTAATGCTTGACCTTTTGTGGAG-TTTTATCATAAAC
1 GCCACTAATGCTTGACCTTTTGCGGCGTTTTTATCATAAAC
*
14140904 GCCACTAATGCTTGACATTTTGCGGCGTTTTTATCATAAAC
1 GCCACTAATGCTTGACCTTTTGCGGCGTTTTTATCATAAAC
* *
14140945 G-CAGTTAATGCTTGACCTTTTGTGGCGTTT
1 GCCA-CTAATGCTTGACCTTTTGCGGCGTTT
14140975 CCGCTATAAC
Statistics
Matches: 96, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
40 37 0.39
41 59 0.61
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (41 bp):
GCCACTAATGCTTGACCTTTTGCGGCGTTTTTATCATAAAC
Found at i:14140958 original size:81 final size:81
Alignment explanation
Indices: 14140823--14140974 Score: 223
Period size: 81 Copynumber: 1.9 Consensus size: 81
14140813 TTTTTTTGCG
* * * * *
14140823 GCCACTACTGCTTGGCCTTTTGCGGTGTTTTTACCATAAACGCCCCTAATGCTTGACCTTTTGTG
1 GCCACTAATGCTTGACATTTTGCGGCGTTTTTACCATAAACGCACCTAATGCTTGACCTTTTGTG
14140888 GAGTTTTATCATAAAC
66 GAGTTTTATCATAAAC
* **
14140904 GCCACTAATGCTTGACATTTTGCGGCGTTTTTATCATAAACGCAGTTAATGCTTGACCTTTTGTG
1 GCCACTAATGCTTGACATTTTGCGGCGTTTTTACCATAAACGCACCTAATGCTTGACCTTTTGTG
*
14140969 GCGTTT
66 GAGTTT
14140975 CCGCTATAAC
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 62 1.00
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (81 bp):
GCCACTAATGCTTGACATTTTGCGGCGTTTTTACCATAAACGCACCTAATGCTTGACCTTTTGTG
GAGTTTTATCATAAAC
Found at i:14145409 original size:21 final size:21
Alignment explanation
Indices: 14145383--14145437 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
14145373 CTTACACCAT
14145383 GTTGTGGATAAACCACTCATC
1 GTTGTGGATAAACCACTCATC
*
14145404 GTTGTGGATGAAA-CACTCGTC
1 GTTGTGGAT-AAACCACTCATC
*
14145425 GTTGTAGATAAAC
1 GTTGTGGATAAAC
14145438 TGCTCATCAG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 3 0.10
21 24 0.80
22 3 0.10
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (21 bp):
GTTGTGGATAAACCACTCATC
Found at i:14146598 original size:5 final size:5
Alignment explanation
Indices: 14146575--14146628 Score: 58
Period size: 5 Copynumber: 11.0 Consensus size: 5
14146565 CAAATATGAT
* * *
14146575 AGAAA AGAAGA GGACA AGAAA AG-AT A-AAA AGAAA AGAAA AGAAA AGAAA
1 AGAAA AGAA-A AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA
14146624 AGAAA
1 AGAAA
14146629 TATAGGATGA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
4 4 0.10
5 33 0.82
6 3 0.08
ACGTcount: A:0.74, C:0.02, G:0.22, T:0.02
Consensus pattern (5 bp):
AGAAA
Found at i:14147634 original size:18 final size:19
Alignment explanation
Indices: 14147594--14147634 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
14147584 AAGACTAACT
*
14147594 AAAT-ATAAATTATTTTTA
1 AAATAATAAATTATTATTA
14147612 AAATAATAAA-TATTATTA
1 AAATAATAAATTATTATTA
*
14147630 TAATA
1 AAATA
14147635 TTATTTTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
AAATAATAAATTATTATTA
Found at i:14150636 original size:40 final size:40
Alignment explanation
Indices: 14150483--14150668 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
14150473 TTGAATGATG
* * * *
14150483 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAA
* * *
14150523 TCCGGACTAAGAT-CCGAAGACATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
14150563 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
14150603 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
14150644 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
14150669 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 118 0.91
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:14150675 original size:80 final size:79
Alignment explanation
Indices: 14150536--14150701 Score: 194
Period size: 80 Copynumber: 2.1 Consensus size: 79
14150526 GGACTAAGAT
* **
14150536 CCGAAGACATTTGTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT
*
14150600 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
* * *
14150616 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGC
1 CCGAAGGCATTTGTACGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGC
* *
14150679 TATATCCGGTTAAATT
64 TAAATCCGGTTAAATC
14150695 CCGAAGG
1 CCGAAGG
14150702 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
79 17 0.23
80 55 0.74
81 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:14152687 original size:8 final size:8
Alignment explanation
Indices: 14152665--14152698 Score: 59
Period size: 8 Copynumber: 4.1 Consensus size: 8
14152655 GTACAAAGAA
14152665 ATTTTGTG
1 ATTTTGTG
14152673 TATTTTGTG
1 -ATTTTGTG
14152682 ATTTTGTG
1 ATTTTGTG
14152690 ATTTTGTG
1 ATTTTGTG
14152698 A
1 A
14152699 ATTAGGGACT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 17 0.68
9 8 0.32
ACGTcount: A:0.15, C:0.00, G:0.24, T:0.62
Consensus pattern (8 bp):
ATTTTGTG
Found at i:14159093 original size:21 final size:21
Alignment explanation
Indices: 14159052--14159093 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
14159042 AATTGAGGTA
*
14159052 AAAGAAAAAAAAGAGAGTTTT
1 AAAGAAAAAAAAGAGAATTTT
*
14159073 AAAGAGAAAAGAAGA-AATTTT
1 AAAGA-AAAAAAAGAGAATTTT
14159094 CTATTTAGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.62, C:0.00, G:0.19, T:0.19
Consensus pattern (21 bp):
AAAGAAAAAAAAGAGAATTTT
Found at i:14161778 original size:18 final size:19
Alignment explanation
Indices: 14161755--14161792 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
14161745 CACCGTATCG
14161755 GTAATAGTAACGGTA-ACA
1 GTAATAGTAACGGTACACA
*
14161773 GTAATAGTAGCGGTACACA
1 GTAATAGTAACGGTACACA
14161792 G
1 G
14161793 AGTACCTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.21
Consensus pattern (19 bp):
GTAATAGTAACGGTACACA
Found at i:14170416 original size:24 final size:24
Alignment explanation
Indices: 14170395--14170439 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
14170385 TTATTTTAGC
14170395 TCTTA-TAAAAAAATATAATTTAA
1 TCTTACTAAAAAAATATAATTTAA
* *
14170418 TTTTACTCAAAAAATATAATTT
1 TCTTACTAAAAAAATATAATTT
14170440 TATTTTATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (24 bp):
TCTTACTAAAAAAATATAATTTAA
Found at i:14171365 original size:33 final size:33
Alignment explanation
Indices: 14171310--14171389 Score: 79
Period size: 33 Copynumber: 2.4 Consensus size: 33
14171300 ATTTTGAAAA
** * *
14171310 AAATATATAAAATATAAAAATATAAATTTTTAT
1 AAATATATAAAAGCTAAAAATATAAATATATAT
* * **
14171343 AAATATATAAAAGCTTATAATATTTATATATAT
1 AAATATATAAAAGCTAAAAATATAAATATATAT
*
14171376 AAATATAAAAAAGC
1 AAATATATAAAAGC
14171390 ATGTAAATTT
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (33 bp):
AAATATATAAAAGCTAAAAATATAAATATATAT
Found at i:14183411 original size:20 final size:22
Alignment explanation
Indices: 14183370--14183411 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
14183360 ATAAAAGGGA
14183370 AAAAAATATAATAATATATTAT
1 AAAAAATATAATAATATATTAT
*
14183392 AAAAAAT-TAAT-ATATTTTAT
1 AAAAAATATAATAATATATTAT
14183412 GTTTAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
21 4 0.21
22 7 0.37
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
AAAAAATATAATAATATATTAT
Found at i:14183738 original size:17 final size:17
Alignment explanation
Indices: 14183712--14183745 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14183702 CTTTTCAAAT
*
14183712 CAAACTCCAATAACTTA
1 CAAACACCAATAACTTA
*
14183729 CAAACACCAATATCTTA
1 CAAACACCAATAACTTA
14183746 TTTACATCCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.29, G:0.00, T:0.24
Consensus pattern (17 bp):
CAAACACCAATAACTTA
Found at i:14193316 original size:18 final size:18
Alignment explanation
Indices: 14193293--14193330 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
14193283 ACATGGCTCA
14193293 CTTGAACTCCCTGTTATG
1 CTTGAACTCCCTGTTATG
*
14193311 CTTGAACTCCTTGTTATG
1 CTTGAACTCCCTGTTATG
14193329 CT
1 CT
14193331 ATCTAGAGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.26, G:0.16, T:0.42
Consensus pattern (18 bp):
CTTGAACTCCCTGTTATG
Found at i:14193463 original size:25 final size:25
Alignment explanation
Indices: 14193425--14193473 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
14193415 TTTAGCCTGG
14193425 ATGAGCTTCTTGATACATGGCTCAC
1 ATGAGCTTCTTGATACATGGCTCAC
*
14193450 ATGAGCATTC-TGATATATGGCTCA
1 ATGAGC-TTCTTGATACATGGCTCA
14193474 AGAGTGTGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 19 0.86
26 3 0.14
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (25 bp):
ATGAGCTTCTTGATACATGGCTCAC
Found at i:14193627 original size:81 final size:82
Alignment explanation
Indices: 14193492--14193657 Score: 298
Period size: 81 Copynumber: 2.0 Consensus size: 82
14193482 CTTCCTAATT
*
14193492 ATGTGCCCTATTTGGGTACCCCTGGATATGAATTGATCGATTTCAGTTTTGTACACTTTAAGTGT
1 ATGTGCCCTATTTGGGTACCCCTAGATATGAATTGATCGATTTCAGTTTTGTACACTTTAAGTGT
14193557 ACTACTTGAAC-TATCC
66 ACTACTTGAACATATCC
* *
14193573 ATGTGCCCTATTTGGGTGCCCCTAGATATGAATTGATGGATTTCAGTTTTGTACACTTTAAGTGT
1 ATGTGCCCTATTTGGGTACCCCTAGATATGAATTGATCGATTTCAGTTTTGTACACTTTAAGTGT
14193638 ACTACTTGAACATATCC
66 ACTACTTGAACATATCC
14193655 ATG
1 ATG
14193658 GGTGAAGTTC
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
81 73 0.90
82 8 0.10
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (82 bp):
ATGTGCCCTATTTGGGTACCCCTAGATATGAATTGATCGATTTCAGTTTTGTACACTTTAAGTGT
ACTACTTGAACATATCC
Found at i:14196815 original size:49 final size:49
Alignment explanation
Indices: 14196737--14196934 Score: 175
Period size: 49 Copynumber: 4.0 Consensus size: 49
14196727 TAGCCAAAGC
* *
14196737 TATCTGGTACATATAGTTGCCTGCACTTAGTACTACACATGCAACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCAACCAAT
* ** * * ** *
14196786 TATCCGGTACATGTAGTAGCCTACACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCAACC-AAT
* * * ***
14196836 CATCTGAT-CACGTAGTAGCCTGCACTTAGTACTACACACGTG-ATTGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA--TGCAACCAA-T
* * *
14196886 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCAACCAAT
14196935 AATCATAGCC
Statistics
Matches: 115, Mismatches: 28, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
49 72 0.63
50 14 0.12
51 29 0.25
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCAACCAAT
Found at i:14206845 original size:64 final size:64
Alignment explanation
Indices: 14206590--14206834 Score: 454
Period size: 64 Copynumber: 3.8 Consensus size: 64
14206580 ATATTCATAA
* * *
14206590 CACATCTAGTTAGGAGCATTTGACTCATTTCGATTATAGCATCCTAATTATTTAACATAAGCAT
1 CACATCTAGTTAGGAGCATTTAATTCATTTCGATCATAGCATCCTAATTATTTAACATAAGCAT
14206654 CACATCTAGTTAGGAGCATTTAATTCATTTCGATCATAGCATCCTAATTATTTAACATAAGCAT
1 CACATCTAGTTAGGAGCATTTAATTCATTTCGATCATAGCATCCTAATTATTTAACATAAGCAT
14206718 CACATCTAGTTAGGAGCATTTAATTCATTTCGATCATAGCATCCTAATTATTTAACATAAGCAT
1 CACATCTAGTTAGGAGCATTTAATTCATTTCGATCATAGCATCCTAATTATTTAACATAAGCAT
*
14206782 CACATCTAGTTAGGAGCATTTAATTCATTTTGATCATAGCATCCTAATTATTT
1 CACATCTAGTTAGGAGCATTTAATTCATTTCGATCATAGCATCCTAATTATTT
14206835 GGAAAAAGCA
Statistics
Matches: 177, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 177 1.00
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.37
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTAATTCATTTCGATCATAGCATCCTAATTATTTAACATAAGCAT
Found at i:14207041 original size:88 final size:88
Alignment explanation
Indices: 14206939--14207567 Score: 891
Period size: 88 Copynumber: 7.1 Consensus size: 88
14206929 AAGTTGCAGC
*
14206939 GGAGCAAATCGAAGACGGTAAGCTTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAG
1 GGAGCAAATCGAAGACGGTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAG
14207004 ATCTTGTCTCCCTAAACAGTAGT
66 ATCTTGTCTCCCTAAACAGTAGT
*
14207027 GGAGCAAATCGAAGACGGTAAGCTTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAG
1 GGAGCAAATCGAAGACGGTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAG
14207092 ATCTTGTCTCCCTAAACAGTAGT
66 ATCTTGTCTCCCTAAACAGTAGT
* * *
14207115 GGAGCAAATCGAAGACGGTAAGCCTTAACCTCCTAAGTAGTAGGGTAGCAGGCTGAAGATTGCAG
1 GGAGCAAATCGAAGACGGTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAG
*** *
14207180 ATCTTGTCTCCCTGAAGTTGCAGT
66 ATCTTGTCTCCCT-AAACAGTAGT
* * * * * * *
14207204 GGAACAGATCAAAGACGGCAAGCCTTAATCCCCTAAGTAGTAGGGTAATAGGCTAAAGATTGTAG
1 GGAGCAAATCGAAGACGGTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAG
*** * *
14207269 ATCTTGTCTCCCTGAAGTTGCAGC
66 ATCTTGTCTCCCT-AAACAGTAGT
* * **
14207293 GGAGCAAATCGAATACGGCAAGCCTTAACCCCCTAAACAGTAGGGTAACAGGCTGAAGATTGTAG
1 GGAGCAAATCGAAGACGGTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAG
14207358 ATCTTGTCTCCCTAAACAGTAGT
66 ATCTTGTCTCCCTAAACAGTAGT
* * *
14207381 GGAGCAAATCAAAGACAGTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGCAG
1 GGAGCAAATCGAAGACGGTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAG
***
14207446 ATCTTGTCTCCCTGAAGTTGTAGT
66 ATCTTGTCTCCCT-AAACAGTAGT
* * * *
14207470 GGAACAGATCAAAGACGGTGAA-CCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGACTGTA
1 GGAGCAAATCGAAGACGGT-AAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTA
*
14207534 GATTTTGTCTCCCTAAACAGTAGT
65 GATCTTGTCTCCCTAAACAGTAGT
14207558 GGAGCAAATC
1 GGAGCAAATC
14207568 AACCCCCTAA
Statistics
Matches: 484, Mismatches: 54, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
88 253 0.52
89 229 0.47
90 2 0.00
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (88 bp):
GGAGCAAATCGAAGACGGTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAG
ATCTTGTCTCCCTAAACAGTAGT
Found at i:14207385 original size:266 final size:265
Alignment explanation
Indices: 14206912--14207567 Score: 1017
Period size: 266 Copynumber: 2.5 Consensus size: 265
14206902 GGTTAATTCA
* * * * * * *
14206912 CAGATCTTGTCTCCTTGAAGTTGCAGCGGAGCAAATCGAAGACGGTAAGCTTTAACCCCCTAAGT
1 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACGGCAAGCCTTAACCCCCTAAGT
* *
14206977 AGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGCAAATCGAAGA
66 AGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAAACAGCAGCGGAGCAAATCGAAGA
* * **
14207042 CGGTAAGCTTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAA
131 CGGCAAGCCTTAACCCCCTAAACAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAA
* * * *
14207107 ACAGTAGTGGAGCAAATCGAAGACGGTAAGCCTTAACCTCCTAAGTAGTAGGGTAGCAGGCTGAA
196 ACAGTAGTGGAGCAAATCAAAGACAGTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAA
14207172 GATTG
261 GATTG
*
14207177 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACGGCAAGCCTTAATCCCCTAAGT
1 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACGGCAAGCCTTAACCCCCTAAGT
* * *** *
14207242 AGTAGGGTAATAGGCTAAAGATTGTAGATCTTGTCTCCCTGAAGTTGCAGCGGAGCAAATCGAAT
66 AGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCT-AAACAGCAGCGGAGCAAATCGAAG
14207307 ACGGCAAGCCTTAACCCCCTAAACAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTA
130 ACGGCAAGCCTTAACCCCCTAAACAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTA
14207372 AACAGTAGTGGAGCAAATCAAAGACAGTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGA
195 AACAGTAGTGGAGCAAATCAAAGACAGTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGA
14207437 AGATTG
260 AGATTG
* *
14207443 CAGATCTTGTCTCCCTGAAGTTGTAGTGGAACAGATCAAAGACGGTGAA-CCTTAACCCCCTAAG
1 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACGG-CAAGCCTTAACCCCCTAAG
* * * *
14207507 TAGTAGGGTAACAGGCTGAAGACTGTAGATTTTGTCTCCCTAAACAGTAGTGGAGCAAATC
65 TAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAAACAGCAGCGGAGCAAATC
14207568 AACCCCCTAA
Statistics
Matches: 353, Mismatches: 36, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
265 110 0.31
266 241 0.68
267 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (265 bp):
CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACGGCAAGCCTTAACCCCCTAAGT
AGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAAACAGCAGCGGAGCAAATCGAAGA
CGGCAAGCCTTAACCCCCTAAACAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAA
ACAGTAGTGGAGCAAATCAAAGACAGTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAA
GATTG
Found at i:14207548 original size:44 final size:44
Alignment explanation
Indices: 14206969--14207549 Score: 169
Period size: 44 Copynumber: 13.1 Consensus size: 44
14206959 AGCTTTAACC
*
14206969 CCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCT
1 CCCTAAGTAGTAGGGTAACAGGCTGAAGACTGTAGATCTTGTCT
** * ** * * *
14207013 CCCTAAACAGTAGTGG-AGCA-AATCGAAGACGGTA-AGCTT-TAACC
1 CCCTAAGTAGTAG-GGTAACAGGCT-GAAGACTGTAGATCTTGT--CT
*
14207057 CCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCT
1 CCCTAAGTAGTAGGGTAACAGGCTGAAGACTGTAGATCTTGTCT
** * ** * * **
14207101 CCCTAAACAGTAGTGG-AGCA-AATCGAAGACGGTA-AGCCTTAAC-
1 CCCTAAGTAGTAG-GGTAACAGGCT-GAAGACTGTAGA-TCTTGTCT
* * *
14207144 CTCCTAAGTAGTAGGGTAGCAGGCTGAAGATTGCAGATCTTGTCT
1 C-CCTAAGTAGTAGGGTAACAGGCTGAAGACTGTAGATCTTGTCT
* * * * * * * *
14207189 CCCTGAAGTTGCAGTGG-AACA-GATCAAAGACGGCA-AGCCTTAATC-
1 CCCT-AAGTAGTAG-GGTAACAGGCT-GAAGACTGTAGA-TCTT-GTCT
* * *
14207234 CCCTAAGTAGTAGGGTAATAGGCTAAAGATTGTAGATCTTGTCT
1 CCCTAAGTAGTAGGGTAACAGGCTGAAGACTGTAGATCTTGTCT
* * * ** * * * * ** *
14207278 CCCTGAAGTTGCAGCGG-AGCA-AATCGAATACGGCA-AGCCTTAACC
1 CCCT-AAGTAGTAG-GGTAACAGGCT-GAAGACTGTAGA-TCTTGTCT
** *
14207323 CCCTAAACAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCT
1 CCCTAAGTAGTAGGGTAACAGGCTGAAGACTGTAGATCTTGTCT
** * ** * * * ** *
14207367 CCCTAAACAGTAGTGG-AGCA-AATCAAAGACAGTA-AGCCTTAACC
1 CCCTAAGTAGTAG-GGTAACAGGCT-GAAGACTGTAGA-TCTTGTCT
* *
14207411 CCCTAAGTAGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCT
1 CCCTAAGTAGTAGGGTAACAGGCTGAAGACTGTAGATCTTGTCT
* * * * * ** *
14207455 CCCTGAAGTTGTAGTGG-AACA-GATCAAAGACGGT-GAACCTTAACC
1 CCCT-AAGTAGTAG-GGTAACAGGCT-GAAGACTGTAG-ATCTTGTCT
*
14207500 CCCTAAGTAGTAGGGTAACAGGCTGAAGACTGTAGATTTTGTCT
1 CCCTAAGTAGTAGGGTAACAGGCTGAAGACTGTAGATCTTGTCT
14207544 CCCTAA
1 CCCTAA
14207550 ACAGTAGTGG
Statistics
Matches: 364, Mismatches: 128, Indels: 90
0.63 0.22 0.15
Matches are distributed among these distances:
42 1 0.00
43 24 0.07
44 234 0.64
45 96 0.26
46 9 0.02
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (44 bp):
CCCTAAGTAGTAGGGTAACAGGCTGAAGACTGTAGATCTTGTCT
Found at i:14207548 original size:177 final size:177
Alignment explanation
Indices: 14206912--14207808 Score: 1007
Period size: 177 Copynumber: 5.2 Consensus size: 177
14206902 GGTTAATTCA
* * * *
14206912 CAGATCTTGTCTCCTTGAAGTTGCAGCGGAGCAAATCGAAGACGGTAAGCTTTAACCCCCTAAGT
1 CAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGTAAGCCTTAACCCCCTAAGT
*
14206977 AGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGCAAATCGAAGA
66 AGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGCAAATCAAAGA
* *
14207042 CGGTAAGCTTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTG
131 CAGTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTG
* *** *
14207089 TAGATCTTGTCTCCCT-AAACAGTAGTGGAGCAAATCGAAGACGGTAAGCCTTAACCTCCTAAGT
1 CAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGTAAGCCTTAACCCCCTAAGT
* * *** * * *
14207153 AGTAGGGTAGCAGGCTGAAGATTGCAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCAAAG
66 AGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCT-AAACAGTAGTGGAGCAAATCAAAG
* * * * *
14207218 ACGGCAAGCCTTAATCCCCTAAGTAGTAGGGTAATAGGCTAAAGATTG
130 ACAGTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTG
* * * * * **
14207266 TAGATCTTGTCTCCCTGAAGTTGCAGCGGAGCAAATCGAATACGGCAAGCCTTAACCCCCTAAAC
1 CAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGTAAGCCTTAACCCCCTAAGT
14207331 AGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGCAAATCAAAGA
66 AGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGCAAATCAAAGA
14207396 CAGTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTG
131 CAGTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTG
* * *
14207443 CAGATCTTGTCTCCCTGAAGTTGTAGTGGAACAGATCAAAGACGGTGAA-CCTTAACCCCCTAAG
1 CAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGT-AAGCCTTAACCCCCTAAG
* *
14207507 TAGTAGGGTAACAGGCTGAAGACTGTAGATTTTGTCTCCCTAAACAGTAGTGGAG-----C--A-
65 TAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGCAAATCAAAG
**
14207564 A-A-T----C--AACCCCCTAAGTAGTAGGGTAATGGGCTGAAGATTG
130 ACAGTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTG
* * * * * * * * **
14207604 CAGATCTTGTCTCCCAGAAGTTGTAGTGGAACAGATCAAAGATGGTGAGCCTTGACCCCTTAAAC
1 CAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGTAAGCCTTAACCCCCTAAGT
** * ** * *
14207669 AGTAGGGTAACAGGCT-AA-ATTACAGATCTTATCTCCCTAAGTAGTAGTTGAG-AGGATCAAAG
66 AGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGCA-AATCAAAG
* ** *
14207731 ACAATGAA-CCTTAACCCCCTAAACAGTAGGGTAACAGGCTG-AGAATTA
130 ACAGT-AAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAG-ATTG
* *
14207779 CA-AGTCTTGTCTCACT-AAGTAGTAGTGGAG
1 CAGA-TCTTGTCTCCCTGAAGTTGTAGTGGAG
14207809 TAGGTTGAAA
Statistics
Matches: 614, Mismatches: 84, Indels: 47
0.82 0.11 0.06
Matches are distributed among these distances:
159 26 0.04
160 3 0.00
161 106 0.17
163 1 0.00
164 1 0.00
166 1 0.00
167 2 0.00
168 2 0.00
169 2 0.00
170 1 0.00
172 1 0.00
173 1 0.00
174 15 0.02
175 40 0.07
176 79 0.13
177 255 0.42
178 78 0.13
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.24
Consensus pattern (177 bp):
CAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGTAAGCCTTAACCCCCTAAGT
AGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGCAAATCAAAGA
CAGTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTG
Found at i:14223774 original size:129 final size:129
Alignment explanation
Indices: 14223544--14223800 Score: 383
Period size: 129 Copynumber: 2.0 Consensus size: 129
14223534 AGAACAAAGG
14223544 TATTCAAATTTCAATTCCATTTTTCTTCTCTTAGAACAATTCCATGGAAAATTTTAGATCCAAAT
1 TATTCAAATTTCAATTCCATTTTTCTTCTCTTAGAACAATTCCATGGAAAATTTTAGATCCAAAT
* * * *
14223609 CATGTAAGGGAGGAAAGACTCAACAAATAGAGAGCAAGAATGGCATCAATGGCATGCAAGATCT
66 CATGTAAGGAAGGAAAGACTCAACAAATAAAGAGCAAGAATGGCATCAATGACATACAAGATCT
* * * *
14223673 TATTCAAATTTCAATTCCCTTTTTGTTCTTTTAGAACAATTCCATGGAAAATTTTAGATTCAAAT
1 TATTCAAATTTCAATTCCATTTTTCTTCTCTTAGAACAATTCCATGGAAAATTTTAGATCCAAAT
* * *
14223738 CATGT-AGGAAAAGG-AAGGCTCAAGAAATAAATAGCAAGAATGGCATCAATGACATACAAGATC
66 CATGTAAGG--AAGGAAAGACTCAACAAATAAAGAGCAAGAATGGCATCAATGACATACAAGATC
14223801 AAAGGTGTTA
Statistics
Matches: 115, Mismatches: 11, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
128 3 0.03
129 109 0.95
130 3 0.03
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.30
Consensus pattern (129 bp):
TATTCAAATTTCAATTCCATTTTTCTTCTCTTAGAACAATTCCATGGAAAATTTTAGATCCAAAT
CATGTAAGGAAGGAAAGACTCAACAAATAAAGAGCAAGAATGGCATCAATGACATACAAGATCT
Found at i:14228800 original size:15 final size:15
Alignment explanation
Indices: 14228780--14228812 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
14228770 TTTAATTCGA
14228780 TATTTACAACAATCG
1 TATTTACAACAATCG
*
14228795 TATTTACACCAATCG
1 TATTTACAACAATCG
14228810 TAT
1 TAT
14228813 ATTCGAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.36, C:0.21, G:0.06, T:0.36
Consensus pattern (15 bp):
TATTTACAACAATCG
Found at i:14231700 original size:486 final size:486
Alignment explanation
Indices: 14230789--14231758 Score: 1288
Period size: 486 Copynumber: 2.0 Consensus size: 486
14230779 AGAACGGGGG
* * ** ** *
14230789 AAACTTCCACGTTGTTAAATCTTAGTCTGATAAGTTTGAGGAATTATGTACAATGTGAGACAACA
1 AAACTTCAACATTGTTAAATCTTAGTCTGATAAGTTCAAGGAAAAATGTACAATGCGAGACAACA
* * * *
14230854 AATGTGCATGGAAAATCATGACTTCTGTTAAGAAGAAGATAGGGTTGTGGACCATAAATAAGTTT
66 AATGTGCATGGAAAATCAAGACTTATGTTAAGAAGAAGATAAGGTTGTGAACCATAAATAAGTTT
** * ** *
14230919 ACCGCTCTGTATACGTGTGTTGTTGTGGGTACTGTGTCAAGACTGTATTATATTTGGGTGTTGAA
131 ACCGCTCTACATACATGTGTTGTCATGGGTACTGTGTCAAGACTGTACTATATTTGGGTGTTGAA
* * * *
14230984 TTCCTAACTTTAACGTACTCGTGTTATTGCAAGTATTTCCCAAAATCATTCGAAATTGGATTCGG
196 TTCCTAACTTTAACGTACTCGTGTTATTGCAAGTATTTCACAAAATCATTCAAAATTGAATTCAG
14231049 AGATGATAATAAATATAATACTACCTATGGTGAAAATGAGTCCTAGGATTGCTGTGTCAATTTTA
261 AGATGATAATAAATATAATACTACCTATGGTGAAAATGAGTCCTAGGATTGCTGTGTCAATTTTA
* * * * *
14231114 ATTACAAATATTCGTAGCCAGTTCGATTACATGTCATCGTACCGCAAAGCGTGGATCACAAAACA
326 ATTACAAATACTCGTAGCCAGTTCGATTACACGTCATCATACCGCAAAACATGGATCACAAAACA
* * *
14231179 TAAAGCACTAGAGAAGATGCATAATGGGTGGGATGTGTCATACAATGATTTGTGGCAGTGGTGTC
391 GAAAGCACTAAAGAAGATGCATAATAGGTGGGATGTGTCATACAATGATTTGTGGCAGTGGTGTC
*
14231244 AGGTACTAGAGAAGTACGTTCCAGATTGCGT
456 AGATACTAGAGAAGTACGTTCCAGATTGCGT
* *
14231275 AAACTTCAACATTGTTAAATCTTAGTCTGATAAGTTCAAGGAAAAATGTGCAATGCGAGACAACT
1 AAACTTCAACATTGTTAAATCTTAGTCTGATAAGTTCAAGGAAAAATGTACAATGCGAGACAACA
* *
14231340 GATGTGCATGGAAAATCACAG-CTTATGTTAAGAAGAAGATAAGGTTGTGAACCATAAA-ATGAT
66 AATGTGCATGGAAAATCA-AGACTTATGTTAAGAAGAAGATAAGGTTGTGAACCATAAATAAG-T
**
14231403 TTATTGCT-TCACATACATGTGTTGTCATGGGTACTGTGTCAAGACTGTACTATATTTGGGTGTT
129 TTACCGCTCT-ACATACATGTGTTGTCATGGGTACTGTGTCAAGACTGTACTATATTTGGGTGTT
* * * * * ***
14231467 GAATTCCTAATTTTAAGGTACTTGTGTTGTTGCAGGTATTTCACGGGATCA-TCTAAAATTGAAT
193 GAATTCCTAACTTTAACGTACTCGTGTTATTGCAAGTATTTCACAAAATCATTC-AAAATTGAAT
**
14231531 TCAGAGATGATCGTAAATATAATACTACCTATGGTGAAAATGAGTACC-AGGATT-CTTGTGTCA
257 TCAGAGATGATAATAAATATAATACTACCTATGGTGAAAATGAGT-CCTAGGATTGC-TGTGTCA
* * *
14231594 ATTTTAATTACAAATAGCT-GTAGCTAGTTCGATTACACGTCGTCATATCGCAAAACATGGATCA
320 ATTTTAATTACAAATA-CTCGTAGCCAGTTCGATTACACGTCATCATACCGCAAAACATGGATCA
* ** * * * * *
14231658 CAGAGTAGAAGGCATTAAAGAATATGCATAATAGGTGGGATGTGTCGTACAATGCTTTGTGGCAG
384 CAAAACAGAAAGCACTAAAGAAGATGCATAATAGGTGGGATGTGTCATACAATGATTTGTGGCAG
* * *
14231723 TGGTGTTAGATACTGGAGAAGTATGTTCCAGATTGC
449 TGGTGTCAGATACTAGAGAAGTACGTTCCAGATTGC
14231759 ATAACTAATC
Statistics
Matches: 417, Mismatches: 60, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
485 6 0.01
486 407 0.98
487 4 0.01
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (486 bp):
AAACTTCAACATTGTTAAATCTTAGTCTGATAAGTTCAAGGAAAAATGTACAATGCGAGACAACA
AATGTGCATGGAAAATCAAGACTTATGTTAAGAAGAAGATAAGGTTGTGAACCATAAATAAGTTT
ACCGCTCTACATACATGTGTTGTCATGGGTACTGTGTCAAGACTGTACTATATTTGGGTGTTGAA
TTCCTAACTTTAACGTACTCGTGTTATTGCAAGTATTTCACAAAATCATTCAAAATTGAATTCAG
AGATGATAATAAATATAATACTACCTATGGTGAAAATGAGTCCTAGGATTGCTGTGTCAATTTTA
ATTACAAATACTCGTAGCCAGTTCGATTACACGTCATCATACCGCAAAACATGGATCACAAAACA
GAAAGCACTAAAGAAGATGCATAATAGGTGGGATGTGTCATACAATGATTTGTGGCAGTGGTGTC
AGATACTAGAGAAGTACGTTCCAGATTGCGT
Found at i:14236938 original size:62 final size:62
Alignment explanation
Indices: 14236827--14236946 Score: 145
Period size: 62 Copynumber: 1.9 Consensus size: 62
14236817 GTAAAGTAAA
* ** *
14236827 GGGACCATAATTGAAATTGAACCATTATTTTATAATATAAAATAGTAGGACACATGTCAAAG
1 GGGACCAAAATTGAAATTGAACCATTATAATATAATATAAAATAATAGGACACATGTCAAAG
* * *
14236889 GGGACCAAAATTGGAATTGGACCATTATAATATAATGA-AGAAA-AATAGGACACCTGTC
1 GGGACCAAAATTGAAATTGAACCATTATAATATAAT-ATA-AAATAATAGGACACATGTC
14236947 CTGTAGGGCT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
62 45 0.92
63 4 0.08
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.26
Consensus pattern (62 bp):
GGGACCAAAATTGAAATTGAACCATTATAATATAATATAAAATAATAGGACACATGTCAAAG
Found at i:14237642 original size:39 final size:39
Alignment explanation
Indices: 14237586--14237662 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
14237576 ATAATTTTTG
**
14237586 TGGAAATGACTTGGATAAGAAAGTTTATGAAAGGAATTA
1 TGGAAATGACTCAGATAAGAAAGTTTATGAAAGGAATTA
14237625 TGGAAATGACTCAGATAAGAAAGTTTATGAAAGGAATT
1 TGGAAATGACTCAGATAAGAAAGTTTATGAAAGGAATT
14237663 TGATATTGGC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.44, C:0.04, G:0.25, T:0.27
Consensus pattern (39 bp):
TGGAAATGACTCAGATAAGAAAGTTTATGAAAGGAATTA
Found at i:14239580 original size:24 final size:24
Alignment explanation
Indices: 14239501--14239590 Score: 94
Period size: 24 Copynumber: 3.7 Consensus size: 24
14239491 TAGCTATCCA
*
14239501 GAGCTTCCCGTTATATGGCTCTTTGT
1 GAGCTTCCCG--ATATGGTTCTTTGT
* *
14239527 GAGCTTTCCGATA--GTCTCTTTAT
1 GAGCTTCCCGATATGGT-TCTTTGT
14239550 GAGCTTCCCGATATGGTTCTTTGT
1 GAGCTTCCCGATATGGTTCTTTGT
*
14239574 GAACTTCCCGATTATGG
1 GAGCTTCCCGA-TATGG
14239591 CTCCTATGGG
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
22 1 0.02
23 18 0.33
24 19 0.35
25 7 0.13
26 9 0.17
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.40
Consensus pattern (24 bp):
GAGCTTCCCGATATGGTTCTTTGT
Found at i:14249063 original size:15 final size:16
Alignment explanation
Indices: 14249036--14249065 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14249026 TTAATTAACT
14249036 AACAAACACAAAAAAG
1 AACAAACACAAAAAAG
14249052 AACAAA-ACAAAAAA
1 AACAAACACAAAAAA
14249066 ATAACCGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.80, C:0.17, G:0.03, T:0.00
Consensus pattern (16 bp):
AACAAACACAAAAAAG
Found at i:14257458 original size:24 final size:24
Alignment explanation
Indices: 14257431--14257477 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
14257421 CTGAATGTGT
*
14257431 GCCACACACGGCCTAGACACACGG
1 GCCACACACGACCTAGACACACGG
14257455 GCCACACACGACCTAGACACACG
1 GCCACACACGACCTAGACACACG
14257478 CCCGTGTGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.32, C:0.43, G:0.21, T:0.04
Consensus pattern (24 bp):
GCCACACACGACCTAGACACACGG
Found at i:14260453 original size:9 final size:9
Alignment explanation
Indices: 14260439--14260468 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
14260429 TCTGAATACT
14260439 CCACCTCTC
1 CCACCTCTC
14260448 CCACCTCTC
1 CCACCTCTC
*
14260457 CCACCTCCC
1 CCACCTCTC
14260466 CCA
1 CCA
14260469 ATTCCTCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.13, C:0.70, G:0.00, T:0.17
Consensus pattern (9 bp):
CCACCTCTC
Found at i:14264657 original size:50 final size:50
Alignment explanation
Indices: 14264527--14264768 Score: 245
Period size: 50 Copynumber: 4.8 Consensus size: 50
14264517 AGCCGAAGCT
** * * *
14264527 ATCTGATACGTATAGTAGCCTGCACTTAGTACTACACATGCGACC-AACA
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * *
14264576 ATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTCACC
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * * *
14264626 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTC
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CC
* * ** * *
14264677 AT-TGAGTACGCATAGTAGTCTGCACTTAGTACTACACATTTGACTTAACT
1 ATCTGA-TACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * * **
14264727 GTATGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTG
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTG
14264769 TATTCACAAT
Statistics
Matches: 156, Mismatches: 33, Indels: 7
0.80 0.17 0.04
Matches are distributed among these distances:
49 39 0.25
50 78 0.50
51 39 0.25
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (50 bp):
ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
Found at i:14264742 original size:101 final size:99
Alignment explanation
Indices: 14264539--14264768 Score: 275
Period size: 101 Copynumber: 2.3 Consensus size: 99
14264529 CTGATACGTA
* *
14264539 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTACACATAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATCCGGTACACATAGTAGCCTGCACTTA
* *
14264604 GTACTACACACGTGACCTCACCATCTGATACACG
66 GTACTACACACGTGACCTAACCATATGATACACG
* * * *
14264638 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTC-AT-TGAGTACGCATAGTAGTCTGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA--CAATCCG-GTACACATAGTAGCCTGCA
** * ** * *
14264701 CTTAGTACTACACATTTGACTTAACTGTATGGTACATG
62 CTTAGTACTACACACGTGACCTAACCATATGATACACG
14264739 TAGTAGCCTGCACTTAGTACTACACACGTG
1 TAGTAGCCTGCACTTAGTACTACACACGTG
14264769 TATTCACAAT
Statistics
Matches: 112, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
99 29 0.26
100 4 0.04
101 78 0.70
102 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGTGACCTAACCATATGATACACG
Found at i:14268178 original size:20 final size:20
Alignment explanation
Indices: 14268153--14268198 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
14268143 ATGAAAATCC
* *
14268153 ATAAAATGGTGAAATTGGCT
1 ATAAAATGGGGAAATTGGAT
14268173 ATAAAATGGGGAAATTGGAT
1 ATAAAATGGGGAAATTGGAT
14268193 ATAAAA
1 ATAAAA
14268199 CAGAATCACA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.48, C:0.02, G:0.24, T:0.26
Consensus pattern (20 bp):
ATAAAATGGGGAAATTGGAT
Found at i:14280488 original size:19 final size:19
Alignment explanation
Indices: 14280464--14280502 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
14280454 GCCTAATTAT
14280464 ACTCTTAGGCAACCTTGGC
1 ACTCTTAGGCAACCTTGGC
14280483 ACTCTTAGGCAACCTTGGC
1 ACTCTTAGGCAACCTTGGC
14280502 A
1 A
14280503 TAACTCATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.26
Consensus pattern (19 bp):
ACTCTTAGGCAACCTTGGC
Found at i:14287245 original size:56 final size:56
Alignment explanation
Indices: 14287159--14287278 Score: 213
Period size: 56 Copynumber: 2.1 Consensus size: 56
14287149 ACAAGGGATG
* *
14287159 ATGGGCAAAACATGTCGTGTAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
14287215 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
14287271 ATGGGCAA
1 ATGGGCAA
14287279 NNNNNNNNNN
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 61 1.00
ACGTcount: A:0.43, C:0.09, G:0.24, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:14291062 original size:39 final size:40
Alignment explanation
Indices: 14290962--14291385 Score: 207
Period size: 40 Copynumber: 10.6 Consensus size: 40
14290952 TCGAATGATG
* * *
14290962 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
14291001 ATCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
14291042 TCCGGGCTAA-ACCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
14291081 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* ** * * *
14291120 AACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-T-GT
1 -TCCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTAAT
* * * * *
14291160 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-T-GT
1 -TCCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTAAT
** * * *
14291200 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-T-GT
1 -TCCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTAAT
* * * * *
14291240 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-T-GT
1 -TCCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTAAT
** * * *
14291280 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-T-GT
1 -TCCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTAAT
* * * * *
14291320 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-T-GT
1 -TCCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTAAT
14291360 ATCCGGGCTAAGTCCCGAAGAGCATT
1 -TCCGGGCTAAGTCCCGAAG-GCATT
14291386 CATGCTAGTG
Statistics
Matches: 342, Mismatches: 35, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
39 33 0.10
40 288 0.84
41 21 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:14291432 original size:40 final size:40
Alignment explanation
Indices: 14291088--14291503 Score: 627
Period size: 40 Copynumber: 10.4 Consensus size: 40
14291078 AAATCTGGGT
* * * * *
14291088 TAAGTCCCGAAG-GCATTTGTGCGAGTTACTATAACCGGGC
1 TAAGTCCCGAAGAGCATTCGTGCTAGTGA-TGTATCCGGGC
*
14291128 TAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGC
1 TAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGC
*
14291168 TAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGC
1 TAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGC
*
14291208 TAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGC
1 TAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGC
*
14291248 TAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGC
1 TAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGC
*
14291288 TAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGC
1 TAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGC
*
14291328 TAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGC
1 TAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGC
*
14291368 TAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGC
1 TAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGC
* * *
14291408 TAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGC
1 TAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGC
** * * *
14291448 TAAACCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGC
1 TAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGC
*
14291488 TAGGTCCCGAAGAGCA
1 TAAGTCCCGAAGAGCA
14291504 ATCATGCTGG
Statistics
Matches: 344, Mismatches: 31, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 332 0.97
41 12 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGC
Found at i:14294533 original size:49 final size:47
Alignment explanation
Indices: 14294394--14295106 Score: 792
Period size: 47 Copynumber: 14.7 Consensus size: 47
14294384 TTAGGATTCT
* * *
14294394 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCG
* *
14294441 ATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCG
*
14294488 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCCAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCG
*
14294537 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCCAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCG
*
14294586 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCCAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCG
*
14294635 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCCAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCG
*
14294684 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCCAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCG
*
14294733 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTG--TATATA--TG-T-----GATAAGGCCGAATGGCCG
* * *
14294790 ATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCG
* * *
14294837 ATGTGATGAAAGTGAACA-TGTATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCG
* * * * *
14294884 ATGTGATGAAAGTGAACA-TGTGTATGTGTGATAAGACCGAATGGCCA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCG
* * * * *
14294931 ATGTGATGAAAGT-AAACATGTATATGTGTGATAAAGCCGAATGGCCA
1 ATGTGATGAATGTGAAA-GTGTATATATGTGATAAGGCCGAATGGCCG
* * * * *
14294978 ATGTGATGAAAGTGAACAG-GTGTATGTGTGATAAGGCCGAGTGGCCA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCG
* * * * *
14295025 ATGTGATGAATGTGAGCA-TGTGTATGTGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGA-AAGTGTATATATGTGATAAGGCCGAATGGCCG
*
14295072 ATGTGATGAATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
14295107 TCCCGAAGGG
Statistics
Matches: 616, Mismatches: 31, Indels: 38
0.90 0.05 0.06
Matches are distributed among these distances:
45 1 0.00
46 4 0.01
47 313 0.51
48 2 0.00
49 251 0.41
51 2 0.00
52 2 0.00
53 2 0.00
55 4 0.01
57 34 0.06
58 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCG
Found at i:14295281 original size:37 final size:37
Alignment explanation
Indices: 14295225--14295304 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
14295215 CCGGGCTCTA
* * *
14295225 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACTCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
14295262 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTACGTGTGGAGATTATGTCCGGGT
14295299 AAGACT
1 AAGACT
14295305 TCGTAATAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:14301477 original size:39 final size:40
Alignment explanation
Indices: 14301432--14301640 Score: 116
Period size: 41 Copynumber: 5.2 Consensus size: 40
14301422 CGGGGTTTAG
* * *
14301432 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
14301471 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
14301511 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* **** * * *
14301551 CCGGATGTAGTTGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
** * * * *
14301592 CCGGATATAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
14301633 CCGGATAT
1 CCGGATAT
14301641 CATTCGAGTA
Statistics
Matches: 148, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
39 18 0.12
40 60 0.41
41 67 0.45
42 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:14301582 original size:41 final size:41
Alignment explanation
Indices: 14301455--14301640 Score: 252
Period size: 41 Copynumber: 4.6 Consensus size: 41
14301445 CTCGCACAAG
* * * * * *
14301455 GCCTTCGGGTCTTAACCCGGATATGGTCAC-TAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
14301495 GCCTTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
* * *
14301535 GCCTTC-GGATCTTAGTCCGGATGTAGTTGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGCTTAGCACAAAA
14301576 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
14301617 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
14301641 CATTCGAGTA
Statistics
Matches: 131, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 3 0.02
40 58 0.44
41 67 0.51
42 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (41 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
Found at i:14301589 original size:81 final size:82
Alignment explanation
Indices: 14301485--14301638 Score: 249
Period size: 81 Copynumber: 1.9 Consensus size: 82
14301475 ATATGGTCAC
* * *
14301485 TAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAATGCCTTC-GGATCTT
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTCGGGA-CTT
*
14301548 AGTCCGGATGTAGTTGCT
65 AGCCCGGATGTAGTTGCT
14301566 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTCGGGACTTA
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTCGGGACTTA
14301631 GCCCGGAT
66 GCCCGGAT
14301639 ATCATTCGAG
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
81 38 0.57
82 26 0.39
83 3 0.04
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (82 bp):
TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTCGGGACTTA
GCCCGGATGTAGTTGCT
Found at i:14330199 original size:27 final size:28
Alignment explanation
Indices: 14330096--14330251 Score: 119
Period size: 27 Copynumber: 5.8 Consensus size: 28
14330086 TGTCTGCCAA
* *
14330096 GACTTCCCCATG-TCTAATGTCCCGACG
1 GACTTCCCCATGTTCTAGTGTCTCGACG
* * * **
14330123 GACTTCCCTATGTT-TAGTATCCCGATA
1 GACTTCCCCATGTTCTAGTGTCTCGACG
* * *
14330150 GACTTCCCCATGTTC-AATTTCTCGATG
1 GACTTCCCCATGTTCTAGTGTCTCGACG
*
14330177 GACTTCCCCATGTTCT-GTGTCTCGAAG
1 GACTTCCCCATGTTCTAGTGTCTCGACG
* * *
14330204 GA-TGTCTCCGTGTT-TAGTGTCTCAACG
1 GACT-TCCCCATGTTCTAGTGTCTCGACG
*
14330231 GACTTTCCCATGTT-TAGTGTC
1 GACTTCCCCATGTTCTAGTGTC
14330252 CCAATAGACT
Statistics
Matches: 103, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
26 2 0.02
27 99 0.96
28 2 0.02
ACGTcount: A:0.17, C:0.28, G:0.19, T:0.35
Consensus pattern (28 bp):
GACTTCCCCATGTTCTAGTGTCTCGACG
Found at i:14330271 original size:27 final size:27
Alignment explanation
Indices: 14330211--14330274 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
14330201 AAGGATGTCT
* *
14330211 CCGTGTTTAGTGTCTCAACGGACTTTC
1 CCGTGTTTAGTGTCCCAACAGACTTTC
* *
14330238 CCATGTTTAGTGTCCCAATAGAC-TTC
1 CCGTGTTTAGTGTCCCAACAGACTTTC
14330264 CTCGTGTTTAG
1 C-CGTGTTTAG
14330275 CATCCTAGCG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 4 0.13
27 27 0.87
ACGTcount: A:0.17, C:0.25, G:0.20, T:0.38
Consensus pattern (27 bp):
CCGTGTTTAGTGTCCCAACAGACTTTC
Found at i:14330413 original size:45 final size:45
Alignment explanation
Indices: 14330357--14330442 Score: 118
Period size: 45 Copynumber: 1.9 Consensus size: 45
14330347 CGTGTTTTAA
* *
14330357 CATGATGCCATAACATCTTTTAGTTATGATCTTACTCATTTCAAT
1 CATGATGCCATAACATCTTTCAATTATGATCTTACTCATTTCAAT
* * * *
14330402 CATGATTCCATAGCATCTTTCAATTGTGGTCTTACTCATTT
1 CATGATGCCATAACATCTTTCAATTATGATCTTACTCATTT
14330443 TAAGTGTATA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 35 1.00
ACGTcount: A:0.26, C:0.21, G:0.10, T:0.43
Consensus pattern (45 bp):
CATGATGCCATAACATCTTTCAATTATGATCTTACTCATTTCAAT
Found at i:14333387 original size:44 final size:43
Alignment explanation
Indices: 14333319--14333466 Score: 155
Period size: 43 Copynumber: 3.4 Consensus size: 43
14333309 TGTGTTGTCG
*
14333319 TGTAAGACCACGTCT-ACGACGTTGGCATC-AACTTATGATTTACA
1 TGTAAGACCACGTCTGA-GATGTTGGCATCGAA-TT-TGATTTACA
*
14333363 TGTAAGACCACGTCTGAGATGTTGGCATCGTATTTGATTT-CGA
1 TGTAAGACCACGTCTGAGATGTTGGCATCGAATTTGATTTAC-A
* *
14333406 -GTAAGACCATGTCTGGGATAG-TGGCATCGATATTTGA-TTACA
1 TGTAAGACCACGTCTGAGAT-GTTGGCATCGA-ATTTGATTTACA
*
14333448 TATAAGACCACGTCTGAGA
1 TGTAAGACCACGTCTGAGA
14333467 CTTTGGAATT
Statistics
Matches: 89, Mismatches: 8, Indels: 15
0.79 0.07 0.13
Matches are distributed among these distances:
42 29 0.33
43 30 0.34
44 28 0.31
45 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30
Consensus pattern (43 bp):
TGTAAGACCACGTCTGAGATGTTGGCATCGAATTTGATTTACA
Found at i:14342028 original size:30 final size:30
Alignment explanation
Indices: 14341994--14342051 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
14341984 TCCTTAACTC
14341994 AAACTTTTGCAAAATTACAATTTTGCCCGT
1 AAACTTTTGCAAAATTACAATTTTGCCCGT
* * *
14342024 AAACTTTTGCATATTTACACTTTTGCCC
1 AAACTTTTGCAAAATTACAATTTTGCCC
14342052 CTAGGCTCGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCGT
Found at i:14347234 original size:43 final size:42
Alignment explanation
Indices: 14347124--14347240 Score: 137
Period size: 43 Copynumber: 2.8 Consensus size: 42
14347114 GTGTTGTTTT
** * *
14347124 GTAAGACCACATCTGGGACGTTGGCATCGTATTTGATTTCAT
1 GTAAGACCATGTCTGGGACGTTGGCATCGTATTTGATTACAC
* *
14347166 GTAAGACCCTGTCTAGGACAG-TGGCATCGATATTTGATTACAC
1 GTAAGACCATGTCTGGGAC-GTTGGCATCG-TATTTGATTACAC
* *
14347209 GTAAGACCATGTCCGGGACGTTGGCATTGTAT
1 GTAAGACCATGTCTGGGACGTTGGCATCGTAT
14347241 GAGCTTTCTG
Statistics
Matches: 62, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
42 27 0.44
43 35 0.56
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.30
Consensus pattern (42 bp):
GTAAGACCATGTCTGGGACGTTGGCATCGTATTTGATTACAC
Found at i:14350754 original size:27 final size:27
Alignment explanation
Indices: 14350735--14350921 Score: 223
Period size: 27 Copynumber: 6.9 Consensus size: 27
14350725 CCTTGCTTTG
14350735 TAGAATTACCATTTTACCCTCGATTTA
1 TAGAATTACCATTTTACCCTCGATTTA
* *
14350762 TAGAATTACCATTTCACCCTCAATTTA
1 TAGAATTACCATTTTACCCTCGATTTA
* * *
14350789 AAAAATTACTATTTTACCCTCGATTTA
1 TAGAATTACCATTTTACCCTCGATTTA
*
14350816 TAAAATTACCATTTTACCCTCGATTTA
1 TAGAATTACCATTTTACCCTCGATTTA
* * *
14350843 CAGAATTACCGTTTTACCCTCTATTTA
1 TAGAATTACCATTTTACCCTCGATTTA
* * *
14350870 CAAAATTAGCATTTTACCCTC-AGTTTA
1 TAGAATTACCATTTTACCCTCGA-TTTA
* * *
14350897 CAAAATTATCATTTTACCCTCGATT
1 TAGAATTACCATTTTACCCTCGATT
14350922 GTTAAATTAC
Statistics
Matches: 141, Mismatches: 17, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 139 0.99
28 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.05, T:0.40
Consensus pattern (27 bp):
TAGAATTACCATTTTACCCTCGATTTA
Found at i:14350803 original size:54 final size:54
Alignment explanation
Indices: 14350738--14350921 Score: 260
Period size: 54 Copynumber: 3.4 Consensus size: 54
14350728 TGCTTTGTAG
* * *
14350738 AATTACCATTTTACCCTCGATTTATAGAATTACCATTTCACCCTCAATTTAAAA
1 AATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCAATTTACAA
* * *
14350792 AATTACTATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCAATTTACAA
* * * * *
14350846 AATTACCGTTTTACCCTCTATTTACAAAATTAGCATTTTACCCTCAGTTTACAA
1 AATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCAATTTACAA
*
14350900 AATTATCATTTTACCCTCGATT
1 AATTACCATTTTACCCTCGATT
14350922 GTTAAATTAC
Statistics
Matches: 113, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 113 1.00
ACGTcount: A:0.32, C:0.23, G:0.05, T:0.40
Consensus pattern (54 bp):
AATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCAATTTACAA
Found at i:14350848 original size:81 final size:81
Alignment explanation
Indices: 14350738--14350921 Score: 273
Period size: 81 Copynumber: 2.3 Consensus size: 81
14350728 TGCTTTGTAG
*
14350738 AATTACCATTTTACCCTCGATTTATAGAATTACCATTTCACCCTCAATTTAAAAAATTA-CTATT
1 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTCACCCTCAATTTAAAAAATTAGC-ATT
*
14350802 TTACCCTC-GATTTATAA
65 TTACCCTCAG-TTTACAA
* * * *
14350819 AATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCTATTTACAAAATTAGCATTT
1 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTCACCCTCAATTTAAAAAATTAGCATTT
14350884 TACCCTCAGTTTACAA
66 TACCCTCAGTTTACAA
*
14350900 AATTATCATTTTACCCTCGATT
1 AATTACCATTTTACCCTCGATT
14350922 GTTAAATTAC
Statistics
Matches: 94, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
81 92 0.98
82 2 0.02
ACGTcount: A:0.32, C:0.23, G:0.05, T:0.40
Consensus pattern (81 bp):
AATTACCATTTTACCCTCGATTTACAGAATTACCATTTCACCCTCAATTTAAAAAATTAGCATTT
TACCCTCAGTTTACAA
Found at i:14350983 original size:27 final size:27
Alignment explanation
Indices: 14350953--14351157 Score: 281
Period size: 27 Copynumber: 7.6 Consensus size: 27
14350943 TGTAGGATAG
14350953 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
14350980 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
14351007 AATTACGAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
14351034 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
14351061 AATTACCTAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
14351088 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
**
14351115 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
14351142 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
14351158 TTGACTTTCT
Statistics
Matches: 159, Mismatches: 15, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
26 5 0.03
27 150 0.94
28 4 0.03
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:14351180 original size:29 final size:27
Alignment explanation
Indices: 14351123--14351216 Score: 98
Period size: 27 Copynumber: 3.4 Consensus size: 27
14351113 AAAATTACCA
* * * *
14351123 AAATACCCCTGATTTACAAAATTACAG
1 AAATACCCTTGCTTTATAAAATTATAG
*
14351150 AAATACCCTTGACTTTCTAAAAATTATAG
1 AAATACCCTTG-CTTTAT-AAAATTATAG
* * *
14351179 AAATACCATTGGTTTATAAAATTATTG
1 AAATACCCTTGCTTTATAAAATTATAG
14351206 AAATACCCTTG
1 AAATACCCTTG
14351217 GTTTGTAGAT
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
27 29 0.53
28 7 0.13
29 19 0.35
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATACCCTTGCTTTATAAAATTATAG
Found at i:14351200 original size:56 final size:55
Alignment explanation
Indices: 14350953--14351216 Score: 207
Period size: 54 Copynumber: 4.8 Consensus size: 55
14350943 TGTAGGATAG
* * * * * *
14350953 AATTACCAAAATACCCCTAGTTTGTAAAATTACCA-AAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCACTGGTTTATAAAATTA-CAGAAATACCCTTGAATTTCTAA
* * * * * * *
14351007 AATTACGAAAATACCCCTAGTTTGTAAAATTACCA-AAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCACTGGTTTATAAAATTA-CAGAAATACCCTTGAATTTCTAA
* * * * * *
14351061 AATTACCTAAATACCACTGGTTTGTGAAATTACCGAAATACCC-TCAATTTGTAA
1 AATTACCAAAATACCACTGGTTTATAAAATTACAGAAATACCCTTGAATTTCTAA
* * * *
14351115 AATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTTGACTTTCTAAA
1 AATTACCAAAATACCACTGGTTTATAAAATTACAGAAATACCCTTGAATTTCT-AA
* * **
14351171 AATTA-TAGAAATACCATTGGTTTATAAAATTATTGAAATACCCTTG
1 AATTACCA-AAATACCACTGGTTTATAAAATTACAGAAATACCCTTG
14351217 GTTTGTAGAT
Statistics
Matches: 180, Mismatches: 25, Indels: 8
0.85 0.12 0.04
Matches are distributed among these distances:
53 2 0.01
54 132 0.73
55 7 0.04
56 39 0.22
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (55 bp):
AATTACCAAAATACCACTGGTTTATAAAATTACAGAAATACCCTTGAATTTCTAA
Found at i:14352180 original size:24 final size:25
Alignment explanation
Indices: 14352148--14352215 Score: 111
Period size: 24 Copynumber: 2.8 Consensus size: 25
14352138 GGAAGTGCTA
*
14352148 AAAGGGCTCTGCCCCAGTTTA-CCG
1 AAAGGGCTCTGCCCCAGTTTATCAG
14352172 AAAGGGCTCTGCCCCAGTTTATCAG
1 AAAGGGCTCTGCCCCAGTTTATCAG
*
14352197 AAAGGGCTTTGCCCCAGTT
1 AAAGGGCTCTGCCCCAGTT
14352216 ATTAAAAGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
24 21 0.51
25 20 0.49
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (25 bp):
AAAGGGCTCTGCCCCAGTTTATCAG
Found at i:14352422 original size:42 final size:42
Alignment explanation
Indices: 14352363--14352454 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
14352353 TAGTCTCCCC
*
14352363 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
*
14352405 AAATGGGCTTGTATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
14352447 AAATGGGC
1 AAATGGGC
14352455 CTAAGGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:14352521 original size:31 final size:31
Alignment explanation
Indices: 14352478--14352561 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
14352468 CGTTTACAGT
*
14352478 AAAGGCTTCGGCCCAGTGATATGATTTTTGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
14352509 AAAGACTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
14352540 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
14352562 TCAAGACTAA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
30 5 0.10
31 45 0.90
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:14352712 original size:134 final size:134
Alignment explanation
Indices: 14352540--14352807 Score: 536
Period size: 134 Copynumber: 2.0 Consensus size: 134
14352530 TGATTTATGA
14352540 AAAGGCTTCGGCCCAGTATATGTCAAGACTAAATAGGGCTTTGGCCCAGATTGTACTGATACCGT
1 AAAGGCTTCGGCCCAGTATATGTCAAGACTAAATAGGGCTTTGGCCCAGATTGTACTGATACCGT
14352605 GTTATTTACTGTTTGTTTGTTATTGGGATTACACATTGAGTTTTCGTAAACTCACCCTGTTTCTA
66 GTTATTTACTGTTTGTTTGTTATTGGGATTACACATTGAGTTTTCGTAAACTCACCCTGTTTCTA
14352670 ACTG
131 ACTG
14352674 AAAGGCTTCGGCCCAGTATATGTCAAGACTAAATAGGGCTTTGGCCCAGATTGTACTGATACCGT
1 AAAGGCTTCGGCCCAGTATATGTCAAGACTAAATAGGGCTTTGGCCCAGATTGTACTGATACCGT
14352739 GTTATTTACTGTTTGTTTGTTATTGGGATTACACATTGAGTTTTCGTAAACTCACCCTGTTTCTA
66 GTTATTTACTGTTTGTTTGTTATTGGGATTACACATTGAGTTTTCGTAAACTCACCCTGTTTCTA
14352804 ACTG
131 ACTG
14352808 TGCAGGTAAT
Statistics
Matches: 134, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
134 134 1.00
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.37
Consensus pattern (134 bp):
AAAGGCTTCGGCCCAGTATATGTCAAGACTAAATAGGGCTTTGGCCCAGATTGTACTGATACCGT
GTTATTTACTGTTTGTTTGTTATTGGGATTACACATTGAGTTTTCGTAAACTCACCCTGTTTCTA
ACTG
Found at i:14355798 original size:15 final size:17
Alignment explanation
Indices: 14355768--14355799 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
14355758 TTGATACTTG
14355768 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
14355785 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
14355800 AATTATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:14355900 original size:12 final size:14
Alignment explanation
Indices: 14355883--14355916 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
14355873 CTGTTTAAAC
14355883 ATGCCATTG-A-TT
1 ATGCCATTGAACTT
14355895 ATGCCATTGAACTT
1 ATGCCATTGAACTT
14355909 ATGCCATT
1 ATGCCATT
14355917 TATTTTTTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 9 0.45
13 1 0.05
14 10 0.50
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (14 bp):
ATGCCATTGAACTT
Found at i:14360168 original size:47 final size:47
Alignment explanation
Indices: 14360095--14360339 Score: 364
Period size: 47 Copynumber: 5.2 Consensus size: 47
14360085 AGATATGTAA
*
14360095 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTCTAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * *
14360142 ATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
14360189 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * * * * *
14360236 ATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTATAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * * *
14360283 ATGTGATAAGGCCGAATGGCCAATGTGATGGATATGAAAGTGTACAA
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
14360330 ATGTGATAAG
1 ATGTGATAAG
14360340 TCCCGAAGGG
Statistics
Matches: 177, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 177 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
Found at i:14362292 original size:27 final size:26
Alignment explanation
Indices: 14362234--14362346 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 26
14362224 AGGAAGCGTC
* *
14362234 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
14362262 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
14362289 CTGGTGGCTCTGCCACGATTATCTATAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
14362317 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
14362343 CTGG
1 CTGG
14362347 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
26 7 0.09
27 37 0.49
28 32 0.42
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:14362319 original size:55 final size:54
Alignment explanation
Indices: 14362234--14362346 Score: 156
Period size: 55 Copynumber: 2.1 Consensus size: 54
14362224 AGGAAGCGTC
*
14362234 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * * *
14362289 CTGGTGGCTCTGCCAC-GATTATCTATATCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCT-GATCTGGTGACTCTGCCACATTATCTGTT
14362343 CTGG
1 CTGG
14362347 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
54 19 0.37
55 33 0.63
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:14366838 original size:48 final size:48
Alignment explanation
Indices: 14366683--14367018 Score: 252
Period size: 48 Copynumber: 7.0 Consensus size: 48
14366673 AGGGTAAAAT
* * *
14366683 GCCGATGCCATG-TCCGAGACATGGTCTTACACTAGCTCTCATACATCG-G
1 GCCGATGCCATGTTCC-AAACATGGTCTTACACTGGCTCACAT--ATCGAG
* * * * ** * ** * * *
14366732 TGCCAATGCCAGGTCCCAGACATGGTCTTACACTAACACATTTAACAAT
1 -GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAG
* *
14366781 GCC-AGTGCCATGTTCCAAATATGGTCTTACACTGGCTCACATATTGAG
1 GCCGA-TGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAG
* * * * *
14366829 GCCAATGCCATGTTCCAAACATGGTCGTACACTGGCTCACATAACAAT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAG
*** ** * *
14366877 AATGATGTTATGTTCCAAACATGGTCTTACACTGGCTCGCATATTCCAG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATA-TCGAG
* * *
14366926 TGCCGATGCCATGTCCCAGACATGGTCTTTCACTGG--CACATATCGAG
1 -GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAG
* *
14366973 GCCGATGCCATG-TCGCAAACATGGTCTTACATTGGCTCTCATATCG
1 GCCGATGCCATGTTC-CAAACATGGTCTTACACTGGCTCACATATCG
14367019 CCATGGTTTA
Statistics
Matches: 221, Mismatches: 56, Indels: 20
0.74 0.19 0.07
Matches are distributed among these distances:
45 1 0.00
46 29 0.13
47 5 0.02
48 123 0.56
49 3 0.01
50 58 0.26
51 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAG
Found at i:14366870 original size:98 final size:98
Alignment explanation
Indices: 14366686--14367016 Score: 284
Period size: 96 Copynumber: 3.4 Consensus size: 98
14366676 GTAAAATGCC
* * * * * *
14366686 GATGCCATG-TCCGAGACATGGTCTTACACTAGCTCTCATACAT-CGGTGCCAATGCCAGGTCCC
1 GATGCCATGTTCC-AAACATGGTCTTACACTGGCTCACATA-TTCCAGTGCCAATGCCATGTCCC
** ** *
14366749 AGACATGGTCTTACACTAACACATTTAACAATGCCA-
64 AGACATGGTCTTACACTGGCACACATAACAAT--AAT
* * * *
14366785 G-TGCCATGTTCCAAATATGGTCTTACACTGGCTCACATATT-GAG-GCCAATGCCATGTTCCAA
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATTCCAGTGCCAATGCCATGTCCCAG
* *
14366847 ACATGGTCGTACACTGGCTCACATAACAATAAT
66 ACATGGTCTTACACTGGCACACATAACAATAAT
** * *
14366880 GATGTTATGTTCCAAACATGGTCTTACACTGGCTCGCATATTCCAGTGCCGATGCCATGTCCCAG
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATTCCAGTGCCAATGCCATGTCCCAG
* * * ****
14366945 ACATGGTCTTTCACTGG--CACATATCGAGGCC
66 ACATGGTCTTACACTGGCACACATAACAATAAT
* *
14366976 GATGCCATG-TCGCAAACATGGTCTTACATTGGCTCTCATAT
1 GATGCCATGTTC-CAAACATGGTCTTACACTGGCTCACATAT
14367017 CGCCATGGTT
Statistics
Matches: 189, Mismatches: 37, Indels: 15
0.78 0.15 0.06
Matches are distributed among these distances:
94 1 0.01
95 3 0.02
96 117 0.62
97 4 0.02
98 60 0.32
99 4 0.02
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (98 bp):
GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATTCCAGTGCCAATGCCATGTCCCAG
ACATGGTCTTACACTGGCACACATAACAATAAT
Found at i:14367636 original size:21 final size:21
Alignment explanation
Indices: 14367607--14367655 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
14367597 CATCATTACC
*
14367607 AAGCCTAGCCAAAACTGATTT
1 AAGCTTAGCCAAAACTGATTT
14367628 AAGCTTAGCCAAAACTGATTT
1 AAGCTTAGCCAAAACTGATTT
14367649 AAGCTTA
1 AAGCTTA
14367656 TAGCAACTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (21 bp):
AAGCTTAGCCAAAACTGATTT
Found at i:14369782 original size:43 final size:43
Alignment explanation
Indices: 14369723--14369817 Score: 113
Period size: 43 Copynumber: 2.2 Consensus size: 43
14369713 TGATTTTGTA
* *
14369723 TAAGACCATGTCTGGGACATTA-GCATCGATATGA-GATTACATG
1 TAAGACCATGTCTGGGACA-GAGGCATCGATAT-ATGATAACATG
* * *
14369766 TAAGACCCTGTTTGGGATAGAGGCATCGATATATGATAACATG
1 TAAGACCATGTCTGGGACAGAGGCATCGATATATGATAACATG
14369809 TAAGACCAT
1 TAAGACCAT
14369818 ATCTAGGATA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
42 2 0.05
43 42 0.95
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACAGAGGCATCGATATATGATAACATG
Found at i:14369827 original size:43 final size:43
Alignment explanation
Indices: 14369745--14369827 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
14369735 TGGGACATTA
* * * * *
14369745 GCATCGATATGAGATTACATGTAAGACCCTGTTTGGGATAGAG
1 GCATCGATATGAGATAACATGTAAGACCATATCTAGGATAGAG
14369788 GCATCGATAT-ATGATAACATGTAAGACCATATCTAGGATA
1 GCATCGATATGA-GATAACATGTAAGACCATATCTAGGATA
14369828 TGGCATTGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 1 0.03
43 33 0.97
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (43 bp):
GCATCGATATGAGATAACATGTAAGACCATATCTAGGATAGAG
Done.