Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 44 of 235
Found at i:14376999 original size:15 final size:17
Alignment explanation
Indices: 14376969--14377000 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
14376959 TTGATACTTG
14376969 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
14376986 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
14377001 AATTATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:14383353 original size:43 final size:43
Alignment explanation
Indices: 14383295--14383378 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
14383285 TGATATATGT
* * *
14383295 GGCATCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGAG
1 GGCATCCAAGATCGTTGAGTGGTCCGAGTTCATAATGGATGAG
*
14383338 GGCATCCAAGATCGTTGAGTGTTCCGAGTTCATAATGGATG
1 GGCATCCAAGATCGTTGAGTGGTCCGAGTTCATAATGGATG
14383379 TGATACATGT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.29
Consensus pattern (43 bp):
GGCATCCAAGATCGTTGAGTGGTCCGAGTTCATAATGGATGAG
Found at i:14391303 original size:29 final size:30
Alignment explanation
Indices: 14391246--14391303 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
14391236 CTTTTGAAAA
* * * *
14391246 TATTTATAAAAAGAGGCATCTAATTTTTAT
1 TATTTACAAAAAGAGGCAACCAAATTTTAT
14391276 TATTTACAAAAAGA-GCAACCAAATTTTA
1 TATTTACAAAAAGAGGCAACCAAATTTTA
14391304 AAAATACTTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 11 0.46
30 13 0.54
ACGTcount: A:0.45, C:0.10, G:0.09, T:0.36
Consensus pattern (30 bp):
TATTTACAAAAAGAGGCAACCAAATTTTAT
Found at i:14401190 original size:53 final size:53
Alignment explanation
Indices: 14401125--14401325 Score: 206
Period size: 53 Copynumber: 3.7 Consensus size: 53
14401115 TTTTTTAAAA
* * *
14401125 TTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAAC
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAC
* * * * * * **
14401178 TCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTTCCTTATAGTAGT
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G-AAC
* * *
14401233 TTATCAATGCCATGCCTTGACATGGTCTTACATGATTTCCTTGCCTTGCA-GAAC
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTT--ATGAAC
** *
14401287 TTACCAATGCCATGCCTTGGTATGGTCTTACTTGGTATC
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATC
14401326 TTTAAACCCT
Statistics
Matches: 118, Mismatches: 26, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
53 42 0.36
54 35 0.30
55 40 0.34
57 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.37
Consensus pattern (53 bp):
TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAC
Found at i:14411326 original size:27 final size:26
Alignment explanation
Indices: 14411277--14411350 Score: 76
Period size: 27 Copynumber: 2.8 Consensus size: 26
14411267 AGCATGGCTG
* * *
14411277 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
*
14411303 CCAGATACAGATATTGTGGTAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
* *
14411330 CTAGAATCAGATAATGTGGCA
1 CCAGAA-CAGATATTGTGGCA
14411351 AACCCACCTA
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
26 6 0.15
27 33 0.85
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:14411563 original size:22 final size:22
Alignment explanation
Indices: 14411515--14411573 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
14411505 GTAAATACGT
*
14411515 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
14411537 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
14411559 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
14411574 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:14411740 original size:27 final size:26
Alignment explanation
Indices: 14411661--14411743 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
14411651 TCAATCGGTC
* * *
14411661 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
14411687 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
14411714 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
14411741 AAC
1 AAC
14411744 GCTTCCTCCA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:14411961 original size:27 final size:28
Alignment explanation
Indices: 14411899--14411962 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 28
14411889 CAGTCACTTG
*
14411899 CCCACAAGGGCAAAACAGTCATTTAACA
1 CCCACAAGGGCAAAACAGTAATTTAACA
* ** *
14411927 CCC-TAAGGGCAAAATGGTAATTTTAC-
1 CCCACAAGGGCAAAACAGTAATTTAACA
14411953 CCCACAAGGG
1 CCCACAAGGG
14411963 TATCTCAGTA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
26 3 0.10
27 23 0.79
28 3 0.10
ACGTcount: A:0.38, C:0.27, G:0.19, T:0.17
Consensus pattern (28 bp):
CCCACAAGGGCAAAACAGTAATTTAACA
Found at i:14411973 original size:27 final size:27
Alignment explanation
Indices: 14411943--14412137 Score: 212
Period size: 27 Copynumber: 7.2 Consensus size: 27
14411933 GGGCAAAATG
* * *
14411943 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * **
14411970 GTAATTCTACCCTATAGGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
14411997 GTATTTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
** **
14412023 GATAATTCTACCCTACGGGGGTATTTTG
1 G-TAATTCTACCCTACAAGGGTATTTCA
* *
14412051 GTAATTCTATCCTATAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
14412078 GTAATTCTACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
14412105 GAAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
14412132 GTAATT
1 GTAATT
14412138 TCACAATCGA
Statistics
Matches: 137, Mismatches: 29, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
26 1 0.01
27 135 0.99
28 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:14411999 original size:54 final size:54
Alignment explanation
Indices: 14411941--14412137 Score: 288
Period size: 54 Copynumber: 3.6 Consensus size: 54
14411931 AAGGGCAAAA
* * *
14411941 TGGTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTT
* **
14411995 TGGTATTTCTACCCTACAAGGGTATTTC-GATAATTCTACCCTACGGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTATAGGGGTATTT
* *
14412049 TGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTT
* *
14412103 TAGAAATTCTACCCTACAAGGGTATTTCAGTAATT
1 TGGTAATTCTACCCTACAAGGGTATTTCAGTAATT
14412138 TCACAATCGA
Statistics
Matches: 126, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
53 1 0.01
54 124 0.98
55 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.37
Consensus pattern (54 bp):
TGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTT
Found at i:14412045 original size:81 final size:81
Alignment explanation
Indices: 14411945--14412137 Score: 235
Period size: 81 Copynumber: 2.4 Consensus size: 81
14411935 GCAAAATGGT
* * * * ** *
14411945 AATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTATAGGGGTATTTTGGTATTTCTACCCT
1 AATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCCT
*
14412010 ACAAGGGTA-TTTCGA
66 ACAAGGGTATTTTAGA
** ** *
14412025 TAATTCTACCCTACGGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCC
1 -AATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCC
* *
14412090 TATAGGGGTATTTTAGA
65 TACAAGGGTATTTTAGA
14412107 AATTCTACCCTACAAGGGTATTTCAGTAATT
1 AATTCTACCCTACAAGGGTATTTCAGTAATT
14412138 TCACAATCGA
Statistics
Matches: 92, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
81 87 0.95
82 5 0.05
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.37
Consensus pattern (81 bp):
AATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCCT
ACAAGGGTATTTTAGA
Found at i:14412178 original size:27 final size:27
Alignment explanation
Indices: 14412142--14412712 Score: 720
Period size: 27 Copynumber: 21.1 Consensus size: 27
14412132 GTAATTTCAC
*
14412142 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
14412169 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
14412196 AA-CTGAGGGTAAACCAGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
14412223 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
14412250 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
14412277 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
14412304 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
14412331 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
14412358 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
14412385 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
14412412 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
14412439 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
14412466 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
14412493 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
14412520 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
14412547 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
14412574 AATTGAGGGTAAAACGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
14412601 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
14412628 AA-CTGAGGGTAAAACGATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
14412655 AATTGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
14412682 AATCGATGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
14412709 AATC
1 AATC
14412713 AGGAGTACTT
Statistics
Matches: 468, Mismatches: 66, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
26 5 0.01
27 459 0.98
28 4 0.01
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:14412757 original size:108 final size:108
Alignment explanation
Indices: 14412132--14412712 Score: 986
Period size: 108 Copynumber: 5.4 Consensus size: 108
14412122 GGGTATTTCA
* * * *
14412132 GTAATTTCAC-AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA-CGATAATTTTGT
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAG-TAATTCTGT
* * *
14412195 AAACTGAGGGTAAACCAGTAATTCTATAAATCAAGGGTAAAACG
65 AAACTGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
14412239 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTA
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTA
14412304 AACTGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
66 AACTGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
14412347 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTA
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTA
14412412 AACTGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
66 AACTGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
14412455 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTA
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTA
14412520 AACTGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
66 AACTGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
* * * *
14412563 GTAATTTTACAAATTGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTATA
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTA
* **
14412628 AACTGAGGGTAAAACGATAATTCTGTAAATTGAGGGTAAAACG
66 AACTGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
* * *
14412671 GTAATTCTATAAATCGATGGTAAAACGGTAATTCTGTAAATC
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATC
14412713 AGGAGTACTT
Statistics
Matches: 452, Mismatches: 20, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
107 9 0.02
108 442 0.98
109 1 0.00
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (108 bp):
GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTA
AACTGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
Found at i:14416627 original size:15 final size:15
Alignment explanation
Indices: 14416604--14416659 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
14416594 AAAACACTAT
*
14416604 TGTTCATAAAATATC
1 TGTTAATAAAATATC
14416619 TGTTAATAAATACTAT-
1 TGTTAATAAA-A-TATC
*
14416635 TGTTCATAAAATATC
1 TGTTAATAAAATATC
14416650 TGTTAATAAA
1 TGTTAATAAA
14416660 CACTGGAACT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
14 3 0.09
15 19 0.54
16 10 0.29
17 3 0.09
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (15 bp):
TGTTAATAAAATATC
Found at i:14416634 original size:31 final size:31
Alignment explanation
Indices: 14416599--14416659 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
14416589 ACTCTAAAAC
14416599 ACTATTGTTCATAAAATATCTGTTAATAAAT
1 ACTATTGTTCATAAAATATCTGTTAATAAAT
14416630 ACTATTGTTCATAAAATATCTGTTAATAAA
1 ACTATTGTTCATAAAATATCTGTTAATAAA
14416660 CACTGGAACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.41
Consensus pattern (31 bp):
ACTATTGTTCATAAAATATCTGTTAATAAAT
Found at i:14429763 original size:47 final size:47
Alignment explanation
Indices: 14429711--14430310 Score: 869
Period size: 47 Copynumber: 12.6 Consensus size: 47
14429701 GATAATTGTG
*
14429711 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
14429758 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
14429807 ATGTGAAAGTGTATATATGTGATAAGGCCCAATGGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
14429854 ATGTGAAAGTGTATATATATGTGATAAGGCCCAATGGCCGATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
14429903 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
14429950 ATGTGAAAGTCTATATATGTGATAAGGCCGAATGGCC-AGTGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGA-TGTGATGA
14429997 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
14430046 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGTCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
14430093 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
14430140 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
14430189 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
14430238 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
14430285 ATGTGAAAGTGTATAAATATGATAAG
1 ATGTGAAAGTATATATATGTGATAAG
14430311 TCCCGAAGGG
Statistics
Matches: 509, Mismatches: 34, Indels: 20
0.90 0.06 0.04
Matches are distributed among these distances:
46 1 0.00
47 278 0.55
49 229 0.45
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:14429813 original size:96 final size:96
Alignment explanation
Indices: 14429711--14430310 Score: 899
Period size: 96 Copynumber: 6.3 Consensus size: 96
14429701 GATAATTGTG
*
14429711 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
14429776 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
14429807 ATGTGAAAGTGTATATATGTGATAAGGCCCAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
14429872 ATGTGATAAGGCCCAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
14429903 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA--GTCTATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
14429966 ATGTGATAAGGCCGAATGGCC-AGTGTGATGA
66 ATGTGATAAGGCCTAATGGCCGA-TGTGATGA
14429997 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
14430060 ATATGTGATAAGGCCTAATAGTCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
14430093 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
14430158 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
14430189 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * *
14430252 ATATGTGACAGGGCCGAGTGGCCAACGTGATGG
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
14430285 ATGTGAAAGTGTATAAATATGATAAG
1 ATGTGAAAGTATATATATGTGATAAG
14430311 TCCCGAAGGG
Statistics
Matches: 463, Mismatches: 31, Indels: 22
0.90 0.06 0.04
Matches are distributed among these distances:
93 1 0.00
94 105 0.23
96 308 0.67
97 1 0.00
98 48 0.10
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (96 bp):
ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:14430310 original size:143 final size:143
Alignment explanation
Indices: 14429711--14430305 Score: 1014
Period size: 143 Copynumber: 4.1 Consensus size: 143
14429701 GATAATTGTG
14429711 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
* *
14429774 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCCAA
64 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
*
14429839 TGGCCGATGTGATGA
129 TGGCCAATGTGATGA
*
14429854 ATGTGAAAGTGTATATATATGTGATAAGGCCCAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
14429919 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTCTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
*
14429984 GCCAGTGTGATGA
131 GCCAATGTGATGA
14429997 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
14430062 ATGTGATAAGGCCTAATAGTCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
14430127 GCCAATGTGATGA
131 GCCAATGTGATGA
14430140 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
* * * *
14430205 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAG
64 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
* *
14430270 TGGCCAACGTGATGG
129 TGGCCAATGTGATGA
*
14430285 ATGTGAAAGTGTATAAATATG
1 ATGTGAAAGTGTATATATATG
14430306 ATAAGTCCCG
Statistics
Matches: 430, Mismatches: 18, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
143 282 0.66
144 2 0.00
145 146 0.34
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
GCCAATGTGATGA
Found at i:14433469 original size:47 final size:48
Alignment explanation
Indices: 14433381--14433597 Score: 184
Period size: 47 Copynumber: 4.6 Consensus size: 48
14433371 GTAAGGTGCC
* * * * *
14433381 GATGCCATGTCCTAGACACGGTCTTACATTGGCTCAT-ATCTCAAGTA
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCATCATCTCAAGCA
14433428 GATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCATAG-A
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCATCATCTCA-AGCA
* * * *
14433475 CGATG-CATATCCCAGACAT-GTCTTACACTGGCTTA-CGTCTCGAAGCCA
1 -GATGCCATGTCCCAGACATGGTCTTACACTGACTCATCATCTC-AAG-CA
* * * * *
14433523 -ATG-CATGTCCCTGACAT-GTCTTACACT-AGTCCTCTTCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCATCATCTCAA-GCA
*
14433568 GATGCCATGTCCTAGACATGGTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
14433598 AGCTCTCACA
Statistics
Matches: 141, Mismatches: 17, Indels: 23
0.78 0.09 0.13
Matches are distributed among these distances:
45 4 0.03
46 56 0.40
47 64 0.45
48 17 0.12
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTCATCATCTCAAGCA
Found at i:14433527 original size:46 final size:46
Alignment explanation
Indices: 14433437--14433549 Score: 131
Period size: 46 Copynumber: 2.4 Consensus size: 46
14433427 AGATGCCATG
*
14433437 TCCCAGACATGGTCTTACACTGACTATCATCTCATAGACGATGCATA
1 TCCCAGACAT-GTCTTACACTGACTATCATCTCATAGACAATGCATA
* * * *
14433484 TCCCAGACATGTCTTACACTGGCT-TACGTCTCGA-AGCCAATGCATG
1 TCCCAGACATGTCTTACACTGACTAT-CATCTC-ATAGACAATGCATA
*
14433530 TCCCTGACATGTCTTACACT
1 TCCCAGACATGTCTTACACT
14433550 AGTCCTCTTC
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
45 1 0.02
46 46 0.79
47 11 0.19
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (46 bp):
TCCCAGACATGTCTTACACTGACTATCATCTCATAGACAATGCATA
Found at i:14435348 original size:108 final size:110
Alignment explanation
Indices: 14435204--14435404 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
14435194 ATCCTTTTGA
* * *
14435204 AACTTACCATTGCTATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATGA-A-CTCACCAA
1 AACTTACCAATGCCATGTCTCGACATGGTATTACATGGTATCCTTGCCTTA-GACACCTCACCAA
14435267 -TGCCATGCCTTAGCATGGTCTTACATGGGACCTTTACCTTATAGT
65 CTGCCATGCCTTAGCATGGTCTTACATGGGACCTTTACCTTATAGT
* * *
14435312 AACTTATCAATGCCATGTCTTGACATGGTATTACATGGTATCCTTGCCTTAGACACCTTACCAAC
1 AACTTACCAATGCCATGTCTCGACATGGTATTACATGGTATCCTTGCCTTAGACACCTCACCAAC
* *
14435377 TTCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTAGCATGGTCTTACATGG
14435405 TATCTTTAAA
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 2 0.02
108 47 0.57
109 7 0.09
110 26 0.32
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTCGACATGGTATTACATGGTATCCTTGCCTTAGACACCTCACCAAC
TGCCATGCCTTAGCATGGTCTTACATGGGACCTTTACCTTATAGT
Found at i:14435362 original size:55 final size:54
Alignment explanation
Indices: 14435157--14435408 Score: 232
Period size: 55 Copynumber: 4.7 Consensus size: 54
14435147 ACACGGGTAC
* * * * *
14435157 CTTACCATTGCCATGACTTGCCATGGTCTTACGTGGTATCCTT---TT-GA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
* * * *
14435206 CTTACCATTGCTATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTAT-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
* * *
14435259 CTCACCAATGCCATGCCTT-AGCATGGTCTTACATGGGA-CCTTTACCTTATAGTAA
1 CTTACCAATGCCATGCCTTGA-CATGGTCTTACATGGTATCC-TTGCCTTATAG-AA
* * * * * *
14435314 CTTATCAATGCCATGTCTTGACATGGTATTACATGGTATCCTTGCCTTAGACAC
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
* *
14435368 CTTACCAACTTCCATGCCTTGGCATGGTCTTACATGGTATC
1 CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATC
14435409 TTTAAACCCT
Statistics
Matches: 164, Mismatches: 27, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
49 38 0.23
52 5 0.03
53 40 0.24
54 9 0.05
55 69 0.42
56 3 0.02
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
Found at i:14444490 original size:22 final size:22
Alignment explanation
Indices: 14444459--14444505 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
14444449 AAAGAAATCC
14444459 CAAGTAACTGTCTCTTTCGGTA
1 CAAGTAACTGTCTCTTTCGGTA
*
14444481 CAAGTGACTGTCTCTTTCGGTA
1 CAAGTAACTGTCTCTTTCGGTA
14444503 CAA
1 CAA
14444506 CTGATACAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.34
Consensus pattern (22 bp):
CAAGTAACTGTCTCTTTCGGTA
Found at i:14446718 original size:55 final size:54
Alignment explanation
Indices: 14446527--14446782 Score: 240
Period size: 55 Copynumber: 4.8 Consensus size: 54
14446517 ACACGGGTAC
* * * * *
14446527 CTTACCATTTCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TT-T-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG-AA
* * **
14446577 CTTACCATTGCCATGTCTCAACATGGTCTTACATGGTATCCTTGCCTTAT-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
* * * *
14446630 CTCACCAATGCCATGCCTTGGCATAGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG-AA
* * * * *
14446685 CTTATCAATGCCATGTCTTGACATGGTATTACATGATATCCTTGCCTTAGA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
*
14446738 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
14446783 AAATCCTAAT
Statistics
Matches: 168, Mismatches: 28, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
50 37 0.22
52 2 0.01
53 45 0.27
54 10 0.06
55 72 0.43
56 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
Found at i:14446725 original size:108 final size:110
Alignment explanation
Indices: 14446575--14446775 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
14446565 TCCTTTTTGA
* * *
14446575 AACTTACCATTGCCATGTCTCAACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTCAACATGGTATTACATGATATCCTTGCCTTA-GAAACCTCACCAA
14446638 -TGCCATGCCTTGGCATAGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATAGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
14446683 AACTTATCAATGCCATGTCTTGACATGGTATTACATGATATCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTCAACATGGTATTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
14446748 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATAGTCTTACATGG
14446776 TATCCTTAAA
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.57
109 7 0.09
110 27 0.33
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.33
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTCAACATGGTATTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATAGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:14448277 original size:29 final size:28
Alignment explanation
Indices: 14448234--14448323 Score: 119
Period size: 29 Copynumber: 3.1 Consensus size: 28
14448224 GTGAGCATGA
14448234 ATATAAAGTGATTTGGGCCTAACGGGCC
1 ATATAAAGTGATTTGGGCCTAACGGGCC
**
14448262 ATATAAAGGTGATTTGGGCCTAATAGGCC
1 ATATAAA-GTGATTTGGGCCTAACGGGCC
*
14448291 ATATGAATA-TGATTTGGGCCTGACGGGCC
1 ATAT-AA-AGTGATTTGGGCCTAACGGGCC
14448320 ATAT
1 ATAT
14448324 GAATGAGATG
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
28 7 0.13
29 44 0.81
30 2 0.04
31 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.28
Consensus pattern (28 bp):
ATATAAAGTGATTTGGGCCTAACGGGCC
Found at i:14451849 original size:43 final size:43
Alignment explanation
Indices: 14451682--14451853 Score: 181
Period size: 43 Copynumber: 4.0 Consensus size: 43
14451672 ATATTGTACA
* * * *
14451682 ATGCCAACGTCCCAGACGTAGTCTTACATGAAATCACATGTCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCACATATCG
*
14451725 ATGCCACTGTCCCAGACAG-GGTCTTACACG-AATCACA-ATTACG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGAAATCACATA-T-CG
* * * *
14451768 ATGCCAATGTCTCAAACATGGTCTTACTCGAAATCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCACATATCG
* *
14451811 ATGCCAATGTCCTAGATGTGGTCTTACACGAGAA-CACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGA-AATCACATATCG
14451854 GAAATCCTAT
Statistics
Matches: 106, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
42 8 0.08
43 86 0.81
44 11 0.10
45 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCACATATCG
Found at i:14454567 original size:30 final size:30
Alignment explanation
Indices: 14454532--14454613 Score: 146
Period size: 30 Copynumber: 2.7 Consensus size: 30
14454522 CTTCTTCGGT
*
14454532 AAAATGACCATTTTGCCCCTAGACCTTGAC
1 AAAATGACCATTTTACCCCTAGACCTTGAC
*
14454562 AAAATGACCATTTTACCCCTAAACCTTGAC
1 AAAATGACCATTTTACCCCTAGACCTTGAC
14454592 AAAATGACCATTTTACCCCTAG
1 AAAATGACCATTTTACCCCTAG
14454614 GCTCAAAAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.34, C:0.29, G:0.10, T:0.27
Consensus pattern (30 bp):
AAAATGACCATTTTACCCCTAGACCTTGAC
Found at i:14457155 original size:40 final size:40
Alignment explanation
Indices: 14457125--14457310 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
14457115 GCTACTCGTT
* *
14457125 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
14457165 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
14457205 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * *
14457245 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TTAGTAAC-TCGCA
*
14457286 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
14457311 CATCATTCAA
Statistics
Matches: 132, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
39 3 0.02
40 115 0.87
41 14 0.11
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:14464507 original size:30 final size:30
Alignment explanation
Indices: 14464454--14464546 Score: 86
Period size: 30 Copynumber: 3.2 Consensus size: 30
14464444 TAAAGGTGAT
* * *
14464454 TTGGGCCTAATGGGTCATGTGAATATGAAA
1 TTGGGCCTGATGGGCCATATGAATATGAAA
* *
14464484 TTGGGCCTGATAGGCCATATGAATGTG-AA
1 TTGGGCCTGATGGGCCATATGAATATGAAA
* * *
14464513 TCGGGTC-GATGGGCCATAT-AA-ATGAGA
1 TTGGGCCTGATGGGCCATATGAATATGAAA
14464540 TTGGGCC
1 TTGGGCC
14464547 AAGTGGGCCA
Statistics
Matches: 50, Mismatches: 12, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
26 2 0.04
27 8 0.16
28 11 0.22
29 7 0.14
30 22 0.44
ACGTcount: A:0.27, C:0.14, G:0.32, T:0.27
Consensus pattern (30 bp):
TTGGGCCTGATGGGCCATATGAATATGAAA
Found at i:14465262 original size:54 final size:54
Alignment explanation
Indices: 14465203--14465367 Score: 155
Period size: 54 Copynumber: 3.1 Consensus size: 54
14465193 TTAAATTCTC
14465203 CCCTGTTTCAGGGTTCGACTGCTCTGACCTTCATGCATTACAACTTATATATCT
1 CCCTGTTTCAGGGTTCGACTGCTCTGACCTTCATGCATTACAACTTATATATCT
* * * * * ** * *
14465257 CCCTG-TACAGGGCTTC-AATACT-T-ATTCCTACA-G-TTTATTAGTTAAAT-TCT
1 CCCTGTTTCAGGG-TTCGACTGCTCTGA--CCTTCATGCATTACAACTTATATATCT
*
14465307 CCCCTGTTTCAGGGTTCGACTGCTCTGACCTTCATGCATTACGACTTATATATCT
1 -CCCTGTTTCAGGGTTCGACTGCTCTGACCTTCATGCATTACAACTTATATATCT
14465362 CCCTGT
1 CCCTGT
14465368 ACAGGGCTTC
Statistics
Matches: 82, Mismatches: 18, Indels: 22
0.67 0.15 0.18
Matches are distributed among these distances:
50 3 0.04
51 18 0.22
52 17 0.21
53 17 0.21
54 24 0.29
55 3 0.04
ACGTcount: A:0.21, C:0.27, G:0.15, T:0.38
Consensus pattern (54 bp):
CCCTGTTTCAGGGTTCGACTGCTCTGACCTTCATGCATTACAACTTATATATCT
Found at i:14465362 original size:105 final size:105
Alignment explanation
Indices: 14465180--14465388 Score: 409
Period size: 105 Copynumber: 2.0 Consensus size: 105
14465170 GGCCAATTAG
14465180 TACAGTTTATTAGTTAAATTCTCCCCTGTTTCAGGGTTCGACTGCTCTGACCTTCATGCATTACA
1 TACAGTTTATTAGTTAAATTCTCCCCTGTTTCAGGGTTCGACTGCTCTGACCTTCATGCATTACA
14465245 ACTTATATATCTCCCTGTACAGGGCTTCAATACTTATTCC
66 ACTTATATATCTCCCTGTACAGGGCTTCAATACTTATTCC
*
14465285 TACAGTTTATTAGTTAAATTCTCCCCTGTTTCAGGGTTCGACTGCTCTGACCTTCATGCATTACG
1 TACAGTTTATTAGTTAAATTCTCCCCTGTTTCAGGGTTCGACTGCTCTGACCTTCATGCATTACA
14465350 ACTTATATATCTCCCTGTACAGGGCTTCAATACTTATTC
66 ACTTATATATCTCCCTGTACAGGGCTTCAATACTTATTC
14465389 NNNNNNNNNN
Statistics
Matches: 103, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
105 103 1.00
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.38
Consensus pattern (105 bp):
TACAGTTTATTAGTTAAATTCTCCCCTGTTTCAGGGTTCGACTGCTCTGACCTTCATGCATTACA
ACTTATATATCTCCCTGTACAGGGCTTCAATACTTATTCC
Found at i:14476609 original size:86 final size:86
Alignment explanation
Indices: 14476464--14476635 Score: 326
Period size: 86 Copynumber: 2.0 Consensus size: 86
14476454 GTGTTATCCA
14476464 ACCAAAATTCAGCTTGCTCGGCGTCGTCGCTGTCCGTAGCTTTAAATTCAGTAGCCCCGTGTTTT
1 ACCAAAATTCAGCTTGCTCGGCGTCGTCGCTGTCCGTAGCTTTAAATTCAGTAGCCCCGTGTTTT
14476529 CAGATTCTATCAACTGGGGGC
66 CAGATTCTATCAACTGGGGGC
14476550 ACCAAAATTCAGCTTGCTCGGCGTCGTCGCTGTCCGTAGCTTTAAATTCAGTAGCCCCGTGTTTT
1 ACCAAAATTCAGCTTGCTCGGCGTCGTCGCTGTCCGTAGCTTTAAATTCAGTAGCCCCGTGTTTT
* *
14476615 CAGATTCTGTCAATTGGGGGC
66 CAGATTCTATCAACTGGGGGC
14476636 TTATTTGACC
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
86 84 1.00
ACGTcount: A:0.19, C:0.26, G:0.24, T:0.31
Consensus pattern (86 bp):
ACCAAAATTCAGCTTGCTCGGCGTCGTCGCTGTCCGTAGCTTTAAATTCAGTAGCCCCGTGTTTT
CAGATTCTATCAACTGGGGGC
Found at i:14477688 original size:72 final size:72
Alignment explanation
Indices: 14477569--14477705 Score: 213
Period size: 72 Copynumber: 1.9 Consensus size: 72
14477559 CTTCTAATTA
* * * *
14477569 TCTCTGGTTAATTTATAGTGAATTTCCAAAGTCATATCAGGGGATCCAGAAATCGCTCTGGCCCT
1 TCTCTGGTTAATTTATAATGAATTTCCAAAGTCATAACAGGGAATCCAGAAACCGCTCTGGCCCT
14477634 ATTACTC
66 ATTACTC
*
14477641 TCTCTGGTTAATTTATAATGAATTTCCAAAGTCGA-AACAGGGAATCCAGAAACCGTTCTGGCCC
1 TCTCTGGTTAATTTATAATGAATTTCCAAAGTC-ATAACAGGGAATCCAGAAACCGCTCTGGCCC
14477705 T
65 T
14477706 GTCTTACGAG
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
72 58 0.98
73 1 0.02
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.31
Consensus pattern (72 bp):
TCTCTGGTTAATTTATAATGAATTTCCAAAGTCATAACAGGGAATCCAGAAACCGCTCTGGCCCT
ATTACTC
Found at i:14478642 original size:40 final size:40
Alignment explanation
Indices: 14478580--14478758 Score: 247
Period size: 40 Copynumber: 4.5 Consensus size: 40
14478570 AAACCAAGTA
* * *
14478580 CCTTCGGGATTTA-ACCGGATATAGCTA-CTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TACCTCGCACAAATG
**
14478619 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTACCTCGCACAAATG
14478659 CCTTCGGGACTTAGCCCGGATATAGTACCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTACCTCGCACAAATG
* *
14478699 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTACCTCGCACAAATG
*
14478739 CCTTCGAGACTTAGCCCGGA
1 CCTTCGGGACTTAGCCCGGA
14478759 ATTAGTCACT
Statistics
Matches: 128, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
39 15 0.12
40 113 0.88
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTACCTCGCACAAATG
Found at i:14483548 original size:40 final size:40
Alignment explanation
Indices: 14483503--14483731 Score: 243
Period size: 40 Copynumber: 5.8 Consensus size: 40
14483493 GGATATAGCT
* **
14483503 ACTCGCTCAAATGCCTTCGAAACATAGCCCGG--TTAGTGTA
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGATTTA--GTA
* *
14483543 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGATTTAGTA
* *
14483583 ATTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGATTTAGTA
* * *
14483623 ACTCACACAAATGCCTTCGGG--ATTGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGATTTAGTA
* * ** *
14483661 ACTCGCACAAATGCCTTCGGGAC-TTGCCCAGAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGATTTAGTA
* * *
14483700 ACTAGCGCAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGG
14483732 TTATCATACA
Statistics
Matches: 163, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
38 34 0.21
39 33 0.20
40 93 0.57
42 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACATAGCCCGGATTTAGTA
Found at i:14483624 original size:80 final size:79
Alignment explanation
Indices: 14483491--14483731 Score: 285
Period size: 80 Copynumber: 3.1 Consensus size: 79
14483481 CGGAATTTAA
* ** * *
14483491 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGAAACATAGCCCGG-TTAGTGTAACTCGCACAAT
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTA--GTAACTCGCACAAA
14483554 TGCCTTCGGGACTTAGC
63 TGCCTTCGGGACTTAGC
* * *
14483571 CCGGATTTAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAATG
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCACAAATG
14483636 CCTTCGGGA-TT-GC
65 CCTTCGGGACTTAGC
* * * * *
14483649 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT-GCCCAGAACTAGTCACTAGCGCAAATG
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC-GGATTAGTAACTCGCACAAATG
14483713 CCTTCGGGACTTAGC
65 CCTTCGGGACTTAGC
14483728 CCGG
1 CCGG
14483732 TTATCATACA
Statistics
Matches: 139, Mismatches: 16, Indels: 13
0.83 0.10 0.08
Matches are distributed among these distances:
77 27 0.19
78 41 0.29
79 9 0.06
80 59 0.42
82 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCACAAATGC
CTTCGGGACTTAGC
Found at i:14492274 original size:46 final size:45
Alignment explanation
Indices: 14492222--14492396 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
14492212 TGTAACCCGC
*
14492222 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * * *
14492268 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** * **
14492314 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
*
14492361 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
14492397 ATGCCCAAAT
Statistics
Matches: 103, Mismatches: 21, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
45 1 0.01
46 68 0.66
47 32 0.31
48 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:14492342 original size:93 final size:93
Alignment explanation
Indices: 14492230--14492401 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
14492220 GCCCATAAGT
** *
14492230 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
14492295 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
14492323 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
14492388 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
14492402 CAAATGTCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:14494818 original size:15 final size:15
Alignment explanation
Indices: 14494792--14494847 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
14494782 CAAGGAAACC
14494792 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
14494807 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
14494822 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
14494837 GAATAAAGAAA
1 GAATAAAGAAA
14494848 CCCAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:14499716 original size:21 final size:22
Alignment explanation
Indices: 14499690--14499730 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
14499680 TCACTTGAAT
14499690 AGGGGC-ACACGCCCGTGTGGA
1 AGGGGCAACACGCCCGTGTGGA
*
14499711 AGGGGCAACACGTCCGTGTG
1 AGGGGCAACACGCCCGTGTG
14499731 ACCATTCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.20, C:0.27, G:0.41, T:0.12
Consensus pattern (22 bp):
AGGGGCAACACGCCCGTGTGGA
Found at i:14500887 original size:47 final size:47
Alignment explanation
Indices: 14500813--14501034 Score: 143
Period size: 47 Copynumber: 4.7 Consensus size: 47
14500803 GTAAGGTCCC
* * * *
14500813 GATGTCATGTCCTAGACACGGTCTTACACTGGCTCAT-ATCTCAAGTA
1 GATGCCATGTCCCAGACA-TGTCTTACACTGGCTCATCATCTCAAGCA
* * *
14500860 GATGCCATGTCCCAGACATAGTCTTACACTGACT-ATCATCTCGTAGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCATCTC-AAGCA
* * * * * *
14500908 GACG-CATGTCCTAGACATGTCTTACACTGGCTTAT-GTCTCGAGGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTC-AAGCA
* * * * *
14500954 GATG-CATATCCCTGACATGTCTTACACTAGC-CCTCGTCTCAATGCCA
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCAA-G-CA
* * *
14501001 -ATGCCATGTCCCAAACATAGTTTTACACTAGCTC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTC
14501035 TTACAAATGA
Statistics
Matches: 139, Mismatches: 26, Indels: 18
0.76 0.14 0.10
Matches are distributed among these distances:
45 2 0.01
46 58 0.42
47 61 0.44
48 17 0.12
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCAAGCA
Found at i:14500948 original size:46 final size:46
Alignment explanation
Indices: 14500818--14500981 Score: 149
Period size: 47 Copynumber: 3.5 Consensus size: 46
14500808 GTCCCGATGT
* * **
14500818 CATGTCCTAGACACGGTCTTACACTGGCTCATATCTCAAGTAGATG-C-
1 CATGTCCTAGACA-TGTCTTACACTGGCTTATATCTC--GTAGCCGACG
* *
14500865 CATGTCCCAGACATAGTCTTACACTGAC-TATCATCTCGTAGCCGACG
1 CATGTCCTAGACAT-GTCTTACACTGGCTTAT-ATCTCGTAGCCGACG
* *
14500912 CATGTCCTAGACATGTCTTACACTGGCTTATGTCTCG-AGGCCGATG
1 CATGTCCTAGACATGTCTTACACTGGCTTATATCTCGTA-GCCGACG
*
14500958 CATATCCCT-GACATGTCTTACACT
1 CATGT-CCTAGACATGTCTTACACT
14500982 AGCCCTCGTC
Statistics
Matches: 99, Mismatches: 11, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
45 6 0.06
46 45 0.45
47 48 0.48
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
CATGTCCTAGACATGTCTTACACTGGCTTATATCTCGTAGCCGACG
Found at i:14507071 original size:26 final size:26
Alignment explanation
Indices: 14507036--14507088 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14507026 ATACCAGCAT
14507036 ATATATTTAGCATTTACTATAATTAA
1 ATATATTTAGCATTTACTATAATTAA
14507062 ATATATTTAGCATTTACTATAATTAA
1 ATATATTTAGCATTTACTATAATTAA
14507088 A
1 A
14507089 CACGTCTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.45
Consensus pattern (26 bp):
ATATATTTAGCATTTACTATAATTAA
Found at i:14514903 original size:43 final size:43
Alignment explanation
Indices: 14514819--14514905 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
14514809 AAGTCGTACA
**
14514819 ATGCCAATGTCCCAGACGTGGTCTTACATGTAGTCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGTAAACACATATCG
* * *
14514862 ATGCCATTGTCCCAGACAG-GGTCTTACTTGTAAACAGATATCG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACATGTAAACACATATCG
14514905 A
1 A
14514906 AATCACATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
43 37 0.97
44 1 0.03
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATGTAAACACATATCG
Found at i:14519792 original size:41 final size:41
Alignment explanation
Indices: 14519731--14520248 Score: 984
Period size: 41 Copynumber: 12.6 Consensus size: 41
14519721 TACTCGAATG
* * * *
14519731 ATATCCGGGCTAAG-TCCCGAAGACTTTTGTGCTAAGCGACT
1 ATATCCGGACTAAGAT-CCGAAGGCATTTGCGCTAAGCGACT
14519772 ATATCCGGACTAAGATCCGAAGGCATTTGCGCTAAGCGACT
1 ATATCCGGACTAAGATCCGAAGGCATTTGCGCTAAGCGACT
14519813 ATATCCGGACTAAGATCCGAAGGCATTTGCGCTAAGCGACT
1 ATATCCGGACTAAGATCCGAAGGCATTTGCGCTAAGCGACT
14519854 ATATCCGGACTAAGATCCGAAGGCATTTGCGCTAAGCGACT
1 ATATCCGGACTAAGATCCGAAGGCATTTGCGCTAAGCGACT
14519895 ATATCCGGACTAAGATCCGAAGGCATTTGCGCTAAGCGACT
1 ATATCCGGACTAAGATCCGAAGGCATTTGCGCTAAGCGACT
14519936 ATATCCGGACTAAGATCCGAAGGCATTTGCGCTAAGCGACT
1 ATATCCGGACTAAGATCCGAAGGCATTTGCGCTAAGCGACT
14519977 ATATCCGGACTAAGATCCGAAGGCATTTGCGCTAAGCGACT
1 ATATCCGGACTAAGATCCGAAGGCATTTGCGCTAAGCGACT
14520018 ATATCCGGACTAAGATCCGAAGGCATTTGCGCTAAGCGACT
1 ATATCCGGACTAAGATCCGAAGGCATTTGCGCTAAGCGACT
14520059 ATATCCGGACTAAGATCCGAAGGCATTTGCGCTAAGCGACT
1 ATATCCGGACTAAGATCCGAAGGCATTTGCGCTAAGCGACT
14520100 ATATCCGGACTAAGATCCGAAGGCATTTGCGCTAAGCGACT
1 ATATCCGGACTAAGATCCGAAGGCATTTGCGCTAAGCGACT
14520141 ATATCCGGACTAAGATCCGAAGGCATTTGCGCTAAGCGACT
1 ATATCCGGACTAAGATCCGAAGGCATTTGCGCTAAGCGACT
14520182 ATATCCGGACTAAGATCCGAAGGCATTTGCGCTAAGCGACT
1 ATATCCGGACTAAGATCCGAAGGCATTTGCGCTAAGCGACT
14520223 ATATCCGGACTAAGATCCGAAGGCAT
1 ATATCCGGACTAAGATCCGAAGGCAT
14520249 ACTTCAGTTG
Statistics
Matches: 472, Mismatches: 4, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
41 471 1.00
42 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.22
Consensus pattern (41 bp):
ATATCCGGACTAAGATCCGAAGGCATTTGCGCTAAGCGACT
Found at i:14522057 original size:40 final size:41
Alignment explanation
Indices: 14521922--14522107 Score: 245
Period size: 41 Copynumber: 4.6 Consensus size: 41
14521912 TACTCGAATG
* *
14521922 ATATCCGGGCTAAG-TCCCGAAGACTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAAGCGACT
* *
14521963 ATATCCGGACTAAGATCCGAAGGCATTTGCGCTAAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAAGCGACT
*
14522004 ATATCCGGACTAAGATCCGAAGGCATTTGTGCT-AGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAAGCGACT
* * *
14522044 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCT-AGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAAGCGACT
*
14522084 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
14522108 CTTGTGCGAG
Statistics
Matches: 132, Mismatches: 10, Indels: 7
0.89 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 63 0.48
41 67 0.51
42 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAAGCGACT
Found at i:14522067 original size:81 final size:79
Alignment explanation
Indices: 14521922--14522143 Score: 243
Period size: 81 Copynumber: 2.8 Consensus size: 79
14521912 TACTCGAATG
* *
14521922 ATATCCGGGCTAAG-TCCCGAAGACTTTTGTGCTAAGCGACTATATCCGGACTAAGAT-CCGAAG
1 ATATCCGGGCTAAGAT-CCGAAGGC-TTTGTGCT-AGCGACTATATCCGGGCTAAG-TCCCGAAG
* *
14521985 GCATTTGCGCTAAGCGACT
62 GCATTTACGCT-AGCGACC
*
14522004 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGATCCGAAGGC-TTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
* *
14522069 TTTATGCTAGTGACC
65 TTTACGCTAGCGACC
* * * * ** *
14522084 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGATCCGAAGGCTTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAG
14522144 ATGCTTGATT
Statistics
Matches: 122, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
78 14 0.11
79 16 0.13
80 28 0.23
81 35 0.29
82 28 0.23
83 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGATCCGAAGGCTTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCAT
TTACGCTAGCGACC
Found at i:14523924 original size:27 final size:27
Alignment explanation
Indices: 14523876--14523969 Score: 116
Period size: 27 Copynumber: 3.5 Consensus size: 27
14523866 AAGGGCATTT
* *
14523876 TAGTCATTTTACCACATAAGGGCAAAA
1 TAGTCATTTTACCTCATGAGGGCAAAA
* *
14523903 TAGTCATTTTATCTCATGAGGGAAAAA
1 TAGTCATTTTACCTCATGAGGGCAAAA
* * *
14523930 TAGTCATATTACCTCCTGAAGGCAAAA
1 TAGTCATTTTACCTCATGAGGGCAAAA
*
14523957 TATTCATTTTACC
1 TAGTCATTTTACC
14523970 CTACAGGGGT
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (27 bp):
TAGTCATTTTACCTCATGAGGGCAAAA
Found at i:14523990 original size:27 final size:27
Alignment explanation
Indices: 14523960--14524025 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
14523950 GGCAAAATAT
*
14523960 TCATTTTACCCTACAGGGGTATTACAG
1 TCATTTTACCCTACAGGAGTATTACAG
* * *
14523987 TCATTTTACCCTATAGGAGTATTTCGG
1 TCATTTTACCCTACAGGAGTATTACAG
*
14524014 TCATTCTACCCT
1 TCATTTTACCCT
14524026 GTGGGGGCAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (27 bp):
TCATTTTACCCTACAGGAGTATTACAG
Found at i:14524037 original size:27 final size:27
Alignment explanation
Indices: 14523986--14524099 Score: 111
Period size: 27 Copynumber: 4.2 Consensus size: 27
14523976 GGGTATTACA
* * * *
14523986 GTCATTTTACCCTATAGGAGTATTTCG
1 GTCATTCTACCCTATGGGGGCATTTCG
*
14524013 GTCATTCTACCCTGTGGGGGCATTTCG
1 GTCATTCTACCCTATGGGGGCATTTCG
* * *
14524040 GTCATTCTAACCTATGGGGGTATTTCA
1 GTCATTCTACCCTATGGGGGCATTTCG
* * * * *
14524067 GTCATTCTACTCGATGAGGGTATTTCA
1 GTCATTCTACCCTATGGGGGCATTTCG
14524094 GTCATT
1 GTCATT
14524100 TTACAACATA
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 74 1.00
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.38
Consensus pattern (27 bp):
GTCATTCTACCCTATGGGGGCATTTCG
Found at i:14524044 original size:54 final size:54
Alignment explanation
Indices: 14523984--14524103 Score: 143
Period size: 54 Copynumber: 2.2 Consensus size: 54
14523974 AGGGGTATTA
* *
14523984 CAGTCATTTTACCCTATAGGAGTATTTCGGTCATTCTACCCTG-TGGGGGCATTT
1 CAGTCATTTTACCCTATAGGAGTATTTCAGTCATTCTACCC-GATGAGGGCATTT
* * * * * * *
14524038 CGGTCATTCTAACCTATGGGGGTATTTCAGTCATTCTACTCGATGAGGGTATTT
1 CAGTCATTTTACCCTATAGGAGTATTTCAGTCATTCTACCCGATGAGGGCATTT
14524092 CAGTCATTTTAC
1 CAGTCATTTTAC
14524104 AACATAAGAG
Statistics
Matches: 53, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
53 1 0.02
54 52 0.98
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.38
Consensus pattern (54 bp):
CAGTCATTTTACCCTATAGGAGTATTTCAGTCATTCTACCCGATGAGGGCATTT
Found at i:14532274 original size:79 final size:81
Alignment explanation
Indices: 14532138--14532320 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
14532128 TCGAATGATG
* *
14532138 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
14532202 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
14532217 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
14532279 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
14532297 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
14532321 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:14532336 original size:40 final size:40
Alignment explanation
Indices: 14532139--14532322 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
14532129 CGAATGATGT
* * * *
14532139 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
14532179 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
14532219 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
14532257 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
14532298 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
14532323 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:14532344 original size:79 final size:79
Alignment explanation
Indices: 14532191--14532355 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
14532181 GGACTAAGAT
* **
14532191 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
14532256 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
14532270 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
14532333 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
14532349 CCGAAGG
1 CCGAAGG
14532356 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:14539715 original size:40 final size:41
Alignment explanation
Indices: 14539618--14539722 Score: 117
Period size: 40 Copynumber: 2.6 Consensus size: 41
14539608 CGAATGATGT
*
14539618 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAA
* * * * *
14539658 CCGGACTAAGAT-TCGAAGGCATTTGTGC-GAGTTACTATAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACCATAA
*
14539698 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
14539723 AACGAGTAGC
Statistics
Matches: 53, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
39 1 0.02
40 44 0.83
41 8 0.15
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (41 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAA
Found at i:14541273 original size:229 final size:229
Alignment explanation
Indices: 14540872--14541330 Score: 918
Period size: 229 Copynumber: 2.0 Consensus size: 229
14540862 TAATTGGCTG
14540872 AACCAAAAATTCTAGAAAAAAATATGTAGATGGACATATGAATCTAGTTTTAGGGAAAAATTACG
1 AACCAAAAATTCTAGAAAAAAATATGTAGATGGACATATGAATCTAGTTTTAGGGAAAAATTACG
14540937 AAACTGATTTTTGAGTTTTAGAACTCAAGATATGATTTTTAAGGTGTCAGTGACACAGTTAGCCA
66 AAACTGATTTTTGAGTTTTAGAACTCAAGATATGATTTTTAAGGTGTCAGTGACACAGTTAGCCA
14541002 ACTGCCTGGAAATTTTTAAAATGGACTGTAAAAGTAAATGAATTAAGTCGGTTAGCACCTCGTGT
131 ACTGCCTGGAAATTTTTAAAATGGACTGTAAAAGTAAATGAATTAAGTCGGTTAGCACCTCGTGT
14541067 TCGACTCCGGAAACGGTCTCGGGTACGGGGTGTT
196 TCGACTCCGGAAACGGTCTCGGGTACGGGGTGTT
14541101 AACCAAAAATTCTAGAAAAAAATATGTAGATGGACATATGAATCTAGTTTTAGGGAAAAATTACG
1 AACCAAAAATTCTAGAAAAAAATATGTAGATGGACATATGAATCTAGTTTTAGGGAAAAATTACG
14541166 AAACTGATTTTTGAGTTTTAGAACTCAAGATATGATTTTTAAGGTGTCAGTGACACAGTTAGCCA
66 AAACTGATTTTTGAGTTTTAGAACTCAAGATATGATTTTTAAGGTGTCAGTGACACAGTTAGCCA
14541231 ACTGCCTGGAAATTTTTAAAATGGACTGTAAAAGTAAATGAATTAAGTCGGTTAGCACCTCGTGT
131 ACTGCCTGGAAATTTTTAAAATGGACTGTAAAAGTAAATGAATTAAGTCGGTTAGCACCTCGTGT
14541296 TCGACTCCGGAAACGGTCTCGGGTACGGGGTGTT
196 TCGACTCCGGAAACGGTCTCGGGTACGGGGTGTT
14541330 A
1 A
14541331 CAGGCAGTTT
Statistics
Matches: 230, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
229 230 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.30
Consensus pattern (229 bp):
AACCAAAAATTCTAGAAAAAAATATGTAGATGGACATATGAATCTAGTTTTAGGGAAAAATTACG
AAACTGATTTTTGAGTTTTAGAACTCAAGATATGATTTTTAAGGTGTCAGTGACACAGTTAGCCA
ACTGCCTGGAAATTTTTAAAATGGACTGTAAAAGTAAATGAATTAAGTCGGTTAGCACCTCGTGT
TCGACTCCGGAAACGGTCTCGGGTACGGGGTGTT
Found at i:14551313 original size:47 final size:47
Alignment explanation
Indices: 14551256--14551346 Score: 164
Period size: 47 Copynumber: 1.9 Consensus size: 47
14551246 GAAATTAAAG
14551256 CTTATCGAGTCTAGTTTTTCATAGAAGAAACGGTGTAAGCAATGGAT
1 CTTATCGAGTCTAGTTTTTCATAGAAGAAACGGTGTAAGCAATGGAT
* *
14551303 CTTATTGAGTCTAGTTTTTTATAGAAGAAACGGTGTAAGCAATG
1 CTTATCGAGTCTAGTTTTTCATAGAAGAAACGGTGTAAGCAATG
14551347 AATTTGTAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (47 bp):
CTTATCGAGTCTAGTTTTTCATAGAAGAAACGGTGTAAGCAATGGAT
Found at i:14554221 original size:20 final size:20
Alignment explanation
Indices: 14554192--14554229 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14554182 AAAATGTGAG
14554192 AAGTAAAAGTT-TAGGGGGA
1 AAGTAAAAGTTCTAGGGGGA
14554211 AAGTAAAAAGTTCTAGGGG
1 AAGT-AAAAGTTCTAGGGG
14554230 TTGAGGGAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 7 0.41
21 6 0.35
ACGTcount: A:0.42, C:0.03, G:0.34, T:0.21
Consensus pattern (20 bp):
AAGTAAAAGTTCTAGGGGGA
Found at i:14554326 original size:29 final size:29
Alignment explanation
Indices: 14554282--14554351 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
14554272 TTTTTTTTTG
* *
14554282 GGGGGGGGGGA-ATGGGGATGGGGGGGAA
1 GGGGGGGGGGATGTGGGGATGGGGGAGAA
* *
14554310 GGGGGGGGGGATGTGGGTATGGGGTAGAA
1 GGGGGGGGGGATGTGGGGATGGGGGAGAA
* *
14554339 GGGAGGTGGGATG
1 GGGGGGGGGGATG
14554352 AGAAAGGAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
28 11 0.31
29 24 0.69
ACGTcount: A:0.17, C:0.00, G:0.70, T:0.13
Consensus pattern (29 bp):
GGGGGGGGGGATGTGGGGATGGGGGAGAA
Found at i:14555391 original size:3 final size:3
Alignment explanation
Indices: 14555383--14555420 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
14555373 AAAACTGCAA
*
14555383 AAG AAG AAG GAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
14555421 TCCAGGTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:14563146 original size:45 final size:45
Alignment explanation
Indices: 14563095--14563185 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
14563085 TTTGTTTTTC
* *
14563095 ATAAAAGATAATTGAAAATTTAAAAATTTGTCCACGTTTAAAATG
1 ATAAAAGATAATTAAAAAATTAAAAATTTGTCCACGTTTAAAATG
*
14563140 ATAAAAGATAATTAAAAAATTAAAAATTTGTTCACGTTTAAAATG
1 ATAAAAGATAATTAAAAAATTAAAAATTTGTCCACGTTTAAAATG
14563185 A
1 A
14563186 CAATAACATA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.52, C:0.05, G:0.10, T:0.33
Consensus pattern (45 bp):
ATAAAAGATAATTAAAAAATTAAAAATTTGTCCACGTTTAAAATG
Found at i:14563202 original size:40 final size:40
Alignment explanation
Indices: 14563158--14563235 Score: 147
Period size: 40 Copynumber: 1.9 Consensus size: 40
14563148 TAATTAAAAA
*
14563158 ATTAAAAATTTGTTCACGTTTAAAATGACAATAACATAAG
1 ATTAAAAATTTGTTCACATTTAAAATGACAATAACATAAG
14563198 ATTAAAAATTTGTTCACATTTAAAATGACAATAACATA
1 ATTAAAAATTTGTTCACATTTAAAATGACAATAACATA
14563236 GGACATAGAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.49, C:0.10, G:0.08, T:0.33
Consensus pattern (40 bp):
ATTAAAAATTTGTTCACATTTAAAATGACAATAACATAAG
Found at i:14564396 original size:64 final size:65
Alignment explanation
Indices: 14564313--14564442 Score: 244
Period size: 64 Copynumber: 2.0 Consensus size: 65
14564303 AAAATTGAGA
14564313 TTTTAGATTTTTTTTTTCATCCAAGATTTTTTTTTTTTAGAATTTTGGTCATTTGAGTTAGTGCT
1 TTTTAGATTTTTTTTTTCATCCAAGATTTTTTTTTTTTAGAATTTTGGTCATTTGAGTTAGTGCT
*
14564378 TTTTA-ATTTTTTTTTTCATGCAAGATTTTTTTTTTTTAGAATTTTGGTCATTTGAGTTAGTGCT
1 TTTTAGATTTTTTTTTTCATCCAAGATTTTTTTTTTTTAGAATTTTGGTCATTTGAGTTAGTGCT
14564442 T
1 T
14564443 AATTGGTTCA
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
64 59 0.92
65 5 0.08
ACGTcount: A:0.18, C:0.07, G:0.14, T:0.61
Consensus pattern (65 bp):
TTTTAGATTTTTTTTTTCATCCAAGATTTTTTTTTTTTAGAATTTTGGTCATTTGAGTTAGTGCT
Found at i:14578136 original size:8 final size:8
Alignment explanation
Indices: 14578125--14578248 Score: 54
Period size: 8 Copynumber: 15.8 Consensus size: 8
14578115 TTAATAATAT
14578125 TTATATTA
1 TTATATTA
14578133 TTATA-T-
1 TTATATTA
14578139 TTATATTA
1 TTATATTA
*
14578147 ATATATTTCGA
1 TTATA-TT--A
*
14578158 TT-TATAAA
1 TTATAT-TA
14578166 TCTATATT-
1 T-TATATTA
14578174 TCTATATTA
1 T-TATATTA
14578183 TT-TATT-
1 TTATATTA
*
14578189 TTATTATTC
1 TTA-TATTA
*
14578198 TATCTATTA
1 T-TATATTA
14578207 TTATATTA
1 TTATATTA
14578215 TCTAT-TTA
1 T-TATATTA
14578223 -TATATTA
1 TTATATTA
14578230 TT-T-TTA
1 TTATATTA
14578236 -TATATTA
1 TTATATTA
14578243 TTATAT
1 TTATAT
14578249 ATATATTTAT
Statistics
Matches: 90, Mismatches: 7, Indels: 38
0.67 0.05 0.28
Matches are distributed among these distances:
5 1 0.01
6 14 0.16
7 13 0.14
8 40 0.44
9 14 0.16
10 6 0.07
11 2 0.02
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.61
Consensus pattern (8 bp):
TTATATTA
Found at i:14578225 original size:45 final size:45
Alignment explanation
Indices: 14578176--14578304 Score: 108
Period size: 47 Copynumber: 2.8 Consensus size: 45
14578166 TCTATATTTC
*
14578176 TATATTATTTATTTTATTATT-CTATCTAT-TATTATATTATCTATT
1 TATATTATTTATTTTATTATTACTATATATATATT-TATT-TCTATT
*
14578221 TATA-TA-TTATTTTTATATATTATTATATATATATTTATTTCTATT
1 TATATTATTTA-TTTTAT-TATTACTATATATATATTTATTTCTATT
* *
14578266 TAGTTATTATTTA-GTTATTATTTA-TATTTAGTATATTTA
1 TA--TATTATTTATTTTATTA-TTACTATATA-TATATTTA
14578305 GAATTTATTA
Statistics
Matches: 70, Mismatches: 4, Indels: 18
0.76 0.04 0.20
Matches are distributed among these distances:
43 3 0.04
44 8 0.11
45 16 0.23
46 17 0.24
47 21 0.30
48 2 0.03
49 3 0.04
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (45 bp):
TATATTATTTATTTTATTATTACTATATATATATTTATTTCTATT
Found at i:14578246 original size:23 final size:23
Alignment explanation
Indices: 14578176--14578256 Score: 69
Period size: 23 Copynumber: 3.4 Consensus size: 23
14578166 TCTATATTTC
*
14578176 TATATTATTTATT-T-TATTATTC
1 TATATTATTT-TTATATATTATTA
* *
14578198 TAT-CTATTATTATATTATCTATTTA
1 TATATTATTTTTATA-TAT-TA-TTA
14578223 TATATTATTTTTATATATTATTA
1 TATATTATTTTTATATATTATTA
14578246 TATATATATTT
1 TATAT-TATTT
14578257 ATTTCTATTT
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
20 2 0.04
21 5 0.11
22 3 0.06
23 11 0.23
24 9 0.19
25 8 0.17
26 9 0.19
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (23 bp):
TATATTATTTTTATATATTATTA
Found at i:14578278 original size:11 final size:11
Alignment explanation
Indices: 14578262--14578289 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
14578252 TATTTATTTC
14578262 TATTTAGTTAT
1 TATTTAGTTAT
14578273 TATTTAGTTAT
1 TATTTAGTTAT
14578284 TATTTA
1 TATTTA
14578290 TATTTAGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (11 bp):
TATTTAGTTAT
Found at i:14578303 original size:43 final size:42
Alignment explanation
Indices: 14578178--14578324 Score: 118
Period size: 43 Copynumber: 3.3 Consensus size: 42
14578168 TATATTTCTA
* * *
14578178 TATTATTTATTTTATTATTCTATCTATTATTATATTATCTATTTAT
1 TATTATTTA-GTTATTATTATATAT-TTA-TATATT-TCTATTTAT
* *
14578224 ATATTATTTTTA-TATATTATTATATATATATTTATTTCTATTTAGT
1 -TATTA--TTTAGT-TATTATTATATATTTATATATTTCTATTTA-T
**
14578270 TATTATTTAGTTATTATT-TATATTTAGTATATTTAGAATTTAT
1 TATTATTTAGTTATTATTATATATTTA-TATATTT-CTATTTAT
14578313 TATTATTTAGTT
1 TATTATTTAGTT
14578325 TAAGTTAAAT
Statistics
Matches: 85, Mismatches: 8, Indels: 18
0.77 0.07 0.16
Matches are distributed among these distances:
42 7 0.08
43 30 0.35
44 6 0.07
45 13 0.15
46 6 0.07
47 8 0.09
48 11 0.13
49 4 0.05
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (42 bp):
TATTATTTAGTTATTATTATATATTTATATATTTCTATTTAT
Found at i:14578322 original size:17 final size:17
Alignment explanation
Indices: 14578274--14578322 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
14578264 TTTAGTTATT
*
14578274 ATTTAGTTATTATTTA-T
1 ATTTA-TTATTATTTAGA
*
14578291 ATTTAGTA-TATTTAGA
1 ATTTATTATTATTTAGA
14578307 ATTTATTATTATTTAG
1 ATTTATTATTATTTAG
14578323 TTTAAGTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 6 0.22
16 9 0.33
17 12 0.44
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (17 bp):
ATTTATTATTATTTAGA
Found at i:14578352 original size:31 final size:33
Alignment explanation
Indices: 14578317--14578387 Score: 92
Period size: 33 Copynumber: 2.2 Consensus size: 33
14578307 ATTTATTATT
* *
14578317 ATTTAGTTTAAGT-TAAATAGAA-AAATTAATA
1 ATTTAATTTAAGTATAAATAAAATAAATTAATA
* *
14578348 ATTTAATTTAAGTATAATTAAAATAAATTATTA
1 ATTTAATTTAAGTATAAATAAAATAAATTAATA
14578381 ATTTAAT
1 ATTTAAT
14578388 AATTTAGAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 12 0.35
32 7 0.21
33 15 0.44
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.44
Consensus pattern (33 bp):
ATTTAATTTAAGTATAAATAAAATAAATTAATA
Found at i:14583315 original size:17 final size:16
Alignment explanation
Indices: 14583277--14583316 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
14583267 AAAAGTGATG
14583277 TTTTAATAGCTAAAGA
1 TTTTAATAGCTAAAGA
*
14583293 TGTTTAATAGCTATAGAA
1 T-TTTAATAGCTAAAG-A
14583311 TTTTAA
1 TTTTAA
14583317 ATGGAGGTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 18 0.86
18 2 0.10
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.42
Consensus pattern (16 bp):
TTTTAATAGCTAAAGA
Found at i:14591072 original size:6 final size:6
Alignment explanation
Indices: 14591049--14591164 Score: 85
Period size: 6 Copynumber: 18.8 Consensus size: 6
14591039 TATCAAAACT
* * * *
14591049 AGAATC AAAATG AGAATC AGAATC AGAATC AG-GTGAC AGAATT AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * * *
14591098 AAAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGTATC AGGTAA-C
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC A-G-AATC
14591148 AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
14591165 GTGAATGCAA
Statistics
Matches: 85, Mismatches: 16, Indels: 18
0.71 0.13 0.15
Matches are distributed among these distances:
5 4 0.05
6 70 0.82
7 8 0.09
8 3 0.04
ACGTcount: A:0.48, C:0.13, G:0.20, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:14591090 original size:37 final size:37
Alignment explanation
Indices: 14591049--14591155 Score: 135
Period size: 37 Copynumber: 2.9 Consensus size: 37
14591039 TATCAAAACT
* *
14591049 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGAATCAGGTGAC
* * *
14591086 AGAATTAGAATCAAAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGAATCAGGTGAC
*
14591123 AGAATCAGAATCAGTATCAGGTAA-CAGAATCAG
1 AGAATCAGAATCAGAATCA-G-AATCAGAATCAG
14591156 AATCAGAATG
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
37 48 0.81
38 9 0.15
39 2 0.03
ACGTcount: A:0.48, C:0.13, G:0.21, T:0.19
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGAATCAGGTGAC
Found at i:14591128 original size:25 final size:25
Alignment explanation
Indices: 14591100--14591164 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
14591090 TTAGAATCAA
* *
14591100 AATCAGAATCAGAATTAGGTGACAG
1 AATCAGAATCAGAATCAGGTAACAG
*
14591125 AATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
14591150 AATCAGAATCAGAAT
1 AATCAGAATCAGAAT
14591165 GTGAATGCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.46, C:0.14, G:0.20, T:0.20
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTAACAG
Found at i:14591157 original size:31 final size:31
Alignment explanation
Indices: 14591061--14591164 Score: 106
Period size: 31 Copynumber: 3.4 Consensus size: 31
14591051 AATCAAAATG
* *
14591061 AGAATCAGAATCAGAATCAGGTGACAGAATT
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
* * *
14591092 AGAATCAAAATCAGAATCA-G-AATTAG-GTGAC
1 AGAATCAGAATCAGAATCAGGTAA-CAGAAT--C
*
14591123 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
14591154 AGAATCAGAAT
1 AGAATCAGAAT
14591165 GTGAATGCAA
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
29 2 0.03
30 3 0.05
31 47 0.81
32 3 0.05
33 3 0.05
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:14591322 original size:27 final size:26
Alignment explanation
Indices: 14591282--14591417 Score: 155
Period size: 27 Copynumber: 5.0 Consensus size: 26
14591272 AACATGGCTG
* * *
14591282 CCAGAACAAATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
14591308 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
* *
14591335 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
14591362 CCAGAAACAGAATATTGTGGCAGAGCCA
1 CCAG-AACAG-ATATTGTGGCAGAGCCA
* * *
14591390 CCAGAATCAGATAATGTAGCAAAGCCA
1 CCAGAA-CAGATATTGTGGCAGAGCCA
14591417 C
1 C
14591418 TTAACAGAAT
Statistics
Matches: 95, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
26 11 0.12
27 57 0.60
28 24 0.25
29 3 0.03
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:14591416 original size:55 final size:54
Alignment explanation
Indices: 14591306--14591417 Score: 163
Period size: 55 Copynumber: 2.1 Consensus size: 54
14591296 GTGACAGAGT
* * * *
14591306 CACCAGATACAGATATTGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGC
1 CACCAGAAACAGATATTGTGGCAGAGCCACCAGATCAGATATATGTAGCAAAGC
14591360 CACCAGAAACAGAATATTGTGGCAGAGCCACCAGAATCAGATA-ATGTAGCAAAGC
1 CACCAGAAACAG-ATATTGTGGCAGAGCCACCAG-ATCAGATATATGTAGCAAAGC
14591415 CAC
1 CAC
14591418 TTAACAGAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
54 11 0.21
55 33 0.63
56 8 0.15
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (54 bp):
CACCAGAAACAGATATTGTGGCAGAGCCACCAGATCAGATATATGTAGCAAAGC
Found at i:14591623 original size:22 final size:22
Alignment explanation
Indices: 14591575--14591633 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
14591565 GTAAATACAT
*
14591575 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
14591597 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
14591619 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
14591634 CGAAAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:14592010 original size:27 final size:27
Alignment explanation
Indices: 14591962--14592391 Score: 549
Period size: 27 Copynumber: 15.9 Consensus size: 27
14591952 GGGCAAAATG
* * * *
14591962 GTAATTTTACCCCAC-GAGGGTATCTCG
1 GTAATTCTACCCTACAG-GGGTATTTCA
* *
14591989 GTAATTCTACCCTACAGAGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
14592016 GTATTTCTACCCTACAAGGGTATTTAA
1 GTAATTCTACCCTACAGGGGTATTTCA
14592043 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
14592070 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
14592097 GTAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
14592124 GTAATTCTACCTTACATGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
14592151 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
14592178 ATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
14592205 GTAATTCTACCTTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
14592232 ATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
14592259 GTAATTCTACCTTACAGGAGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
14592286 GTAATTCTAACCTATAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
14592312 GATAATTCTACCTTACAGGAGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * *
14592340 GTAATTCTACCTTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
14592367 GTAATTCTACCTTACAGGGGTATTT
1 GTAATTCTACCCTACAGGGGTATTT
14592392 TGAGGTATTT
Statistics
Matches: 352, Mismatches: 48, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
26 1 0.00
27 349 0.99
28 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:14593341 original size:24 final size:25
Alignment explanation
Indices: 14593309--14593369 Score: 83
Period size: 24 Copynumber: 2.5 Consensus size: 25
14593299 TGTTACATTC
*
14593309 GAGCTTACTGTTCT-CAGCTC-GTCA
1 GAGCTTACTGTTCTCCAGCTCAAT-A
14593333 GAGCTTACTGTT-TCCAGCTCAATA
1 GAGCTTACTGTTCTCCAGCTCAATA
14593357 GAGCTTACTGTTC
1 GAGCTTACTGTTC
14593370 ATTAGCTCTG
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
23 1 0.03
24 31 0.94
25 1 0.03
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (25 bp):
GAGCTTACTGTTCTCCAGCTCAATA
Found at i:14596381 original size:13 final size:13
Alignment explanation
Indices: 14596363--14596387 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14596353 GTAAGTGATT
14596363 TTGATGATTTTTC
1 TTGATGATTTTTC
14596376 TTGATGATTTTT
1 TTGATGATTTTT
14596388 GTACTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:14597209 original size:46 final size:47
Alignment explanation
Indices: 14597065--14597375 Score: 177
Period size: 47 Copynumber: 6.5 Consensus size: 47
14597055 ATTGTGAGTT
* * * * * *
14597065 AGTGTAAGA-CATGCCTGGGACATGCATCAACCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCTCGTAAAGAGAGCC
* * * *
14597111 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTG-AGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCAGCCTCGTA-AAGAGAGCC
*
14597159 AGTGTAAGA-CATGTCTAGGACATGCATCAGCCTCGTAAAGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCTCGTAAAG-AGAGCC
* * * * ** *
14597205 AGTGTAAGACCATGTCTGGGACCTGGCACCGAGAC-GGATATGCGAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATC-AGCCTCG-TA-AAGAGAGCC
* * * * * * * * *
14597255 AGTGTAACACCATGTATGGGACATGGCGTCGGCCCCGATGACGATAGTC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCAGCCTCG-TAAAGAGAGCC
* * * * * *
14597304 AGTGTAAGACCATCTCTGGGACATGGCAAC-GACTTG-AGACATGAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCAGCCTCGTAAAGA-GAGCC
14597351 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
14597376 GCATTGGTAT
Statistics
Matches: 202, Mismatches: 50, Indels: 26
0.73 0.18 0.09
Matches are distributed among these distances:
46 35 0.17
47 66 0.33
48 31 0.15
49 38 0.19
50 32 0.16
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATCAGCCTCGTAAAGAGAGCC
Found at i:14597225 original size:94 final size:94
Alignment explanation
Indices: 14597064--14597375 Score: 292
Period size: 94 Copynumber: 3.3 Consensus size: 94
14597054 TATTGTGAGT
* * * * *
14597064 TAGTGTAAGA-CATGCCTGGGACATGCATCAACCACATTATGAGAGCCAGTGTAAGACCATGTCT
1 TAGTGTAAGACCATGTCTGGGACATGCATCAGCCACGTAAAGAGAGCCAGTGTAAGACCATGTCT
*
14597128 GGGACATGGCATCAGCATTGAGACGAGAGC
66 GGGACATGGCAACAG-ATTGAGACGAGAGC
* *
14597158 TAGTGTAAGA-CATGTCTAGGACATGCATCAGCCTCGTAAAGTA-AGCCAGTGTAAGACCATGTC
1 TAGTGTAAGACCATGTCTGGGACATGCATCAGCCACGTAAAG-AGAGCCAGTGTAAGACCATGTC
* * ** *
14597221 TGGGACCTGGCACCGAGACGGATATGCGAGAGC
65 TGGGACATGGCAAC-AGATTGAGA--CGAGAGC
* * * * * * * * * *
14597254 TAGTGTAACACCATGTATGGGACATGGCGTCGGCCCCGATGACGATAGTCAGTGTAAGACCATCT
1 TAGTGTAAGACCATGTCTGGGACAT-GCATCAGCCACG-TAAAGAGAGCCAGTGTAAGACCATGT
14597319 CTGGGACATGGCAAC-GACTTGAGAC-ATGAGC
64 CTGGGACATGGCAACAGA-TTGAGACGA-GAGC
*
14597350 CAGTGTAAGACCATGTCTGGGACATG
1 TAGTGTAAGACCATGTCTGGGACATG
14597376 GCATTGGTAT
Statistics
Matches: 178, Mismatches: 30, Indels: 19
0.78 0.13 0.08
Matches are distributed among these distances:
94 70 0.39
95 5 0.03
96 43 0.24
97 14 0.08
98 13 0.07
99 33 0.19
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.21
Consensus pattern (94 bp):
TAGTGTAAGACCATGTCTGGGACATGCATCAGCCACGTAAAGAGAGCCAGTGTAAGACCATGTCT
GGGACATGGCAACAGATTGAGACGAGAGC
Found at i:14597369 original size:47 final size:49
Alignment explanation
Indices: 14597106--14597379 Score: 228
Period size: 47 Copynumber: 5.7 Consensus size: 49
14597096 CACATTATGA
*
14597106 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CATTGAGACGA-
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGAC-TCGAGACGAT
* * * *
14597154 GAGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCAGCCTCGTA-AAG-T
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGACTCG-AGACGAT
* * * * *
14597200 AAGCCAGTGTAAGACCATGTCTGGGACCTGGCACCGAGAC-GGATATGCGA-
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-AGACTCGAGA--CGAT
* * * * * * *
14597250 GAGCTAGTGTAACACCATGTATGGGACATGGCGTCGGCCCCGATGACGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGACTCGA-GACGAT
* * * *
14597300 -AGTCAGTGTAAGACCATCTCTGGGACATGGCAAC-GACTTGAGAC-AT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGACTCGAGACGAT
14597346 GAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
14597380 TGGTATTATA
Statistics
Matches: 176, Mismatches: 36, Indels: 29
0.73 0.15 0.12
Matches are distributed among these distances:
46 25 0.14
47 61 0.35
48 23 0.13
49 35 0.20
50 31 0.18
51 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.30, T:0.20
Consensus pattern (49 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGACTCGAGACGAT
Found at i:14604035 original size:13 final size:13
Alignment explanation
Indices: 14604017--14604041 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14604007 GTAAGTGATT
14604017 TTGATGATTTTTC
1 TTGATGATTTTTC
14604030 TTGATGATTTTT
1 TTGATGATTTTT
14604042 GTACTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:14604874 original size:94 final size:99
Alignment explanation
Indices: 14604756--14605029 Score: 266
Period size: 96 Copynumber: 2.8 Consensus size: 99
14604746 ATATTATGAG
* * * * *
14604756 AGCCAGTGTCAGACCATGTCTGGGACATGGCATCGGCAT-TA-AGACGAGAGCTAGTGTAATA-T
1 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATGGATAGACGAGAGCTAGTGTAAGACC
* * *
14604818 GTGTCTGGGACATG-CATCGGCCTTG-TGAA-G-T
66 ATATCTGGGACATGACATCGGCCTCGAT-AACGAT
* * *
14604849 AAGCC-GATGTAAGACCATGTTTGGGACATGGCATGGGCATGGATATACGAGAGCTTGTGTAAGA
1 -AGCCAG-TGTAAGACCATGTTTGGGACATGGCATCGGCATGGATAGACGAGAGCTAGTGTAAGA
*
14604913 CCATATTTGGGACATGACATCGGCCTCGATAACGAT
64 CCATATCTGGGACATGACATCGGCCTCGATAACGAT
* ** *
14604949 AGTCAGTGTAAGACCATGTTTGGGACATGGCATCAAC-TTG--AGAC-ATGAGCTAGTGTAAGAC
1 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATGGATAGACGA-GAGCTAGTGTAAGAC
* *
14605010 CATGTCTGGGACATGGCATC
65 CATATCTGGGACATGACATC
14605030 AGTATTATAC
Statistics
Matches: 148, Mismatches: 22, Indels: 18
0.79 0.12 0.10
Matches are distributed among these distances:
93 1 0.01
94 34 0.23
95 2 0.01
96 51 0.34
97 11 0.07
98 14 0.09
99 33 0.22
100 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (99 bp):
AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATGGATAGACGAGAGCTAGTGTAAGACC
ATATCTGGGACATGACATCGGCCTCGATAACGAT
Found at i:14604914 original size:50 final size:49
Alignment explanation
Indices: 14604856--14605029 Score: 169
Period size: 49 Copynumber: 3.6 Consensus size: 49
14604846 AGTAAGCCGA
* * *
14604856 TGTAAGACCATGTTTGGGACATGGCATGGGCATGGATATACGAGAG-CTTG
1 TGTAAGACCATGTTTGGGACATGGCATCGGCATCGATA-ACGAGAGTC-AG
* * * *
14604906 TGTAAGACCATATTTGGGACATGACATCGGCCTCGATAACGATAGTCAG
1 TGTAAGACCATGTTTGGGACATGGCATCGGCATCGATAACGAGAGTCAG
** * *
14604955 TGTAAGACCATGTTTGGGACATGGCATCAAC-TTGA-GAC-ATGAG-CTAG
1 TGTAAGACCATGTTTGGGACATGGCATCGGCATCGATAACGA-GAGTC-AG
*
14605002 TGTAAGACCATGTCTGGGACATGGCATC
1 TGTAAGACCATGTTTGGGACATGGCATC
14605030 AGTATTATAC
Statistics
Matches: 106, Mismatches: 15, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
46 2 0.02
47 33 0.31
48 3 0.03
49 34 0.32
50 34 0.32
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (49 bp):
TGTAAGACCATGTTTGGGACATGGCATCGGCATCGATAACGAGAGTCAG
Found at i:14604971 original size:49 final size:50
Alignment explanation
Indices: 14604753--14605029 Score: 188
Period size: 47 Copynumber: 5.7 Consensus size: 50
14604743 GCCATATTAT
* * * * *
14604753 GAGAGCCAGTGTCAGACCATGTCTGGGACATGGCATCGGCAT-TA-AGAC
1 GAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCGATATAC
* ** * * *
14604801 GAGAGCTAGTGTAATA-TGTGTCTGGGACAT-GCATCGGCCTTG-TGA-A-
1 GAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCGAT-ATAC
* * *
14604847 GTA-AGC-CGATGTAAGACCATGTTTGGGACATGGCATGGGCATGGATATAC
1 G-AGAGCTAG-TGTAAGACCATGTTTGGGACATGGCATCGGCATCGATATAC
* * * *
14604897 GAGAGCTTGTGTAAGACCATATTTGGGACATGACATCGGCCTCGATA-AC
1 GAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCGATATAC
* ** * *
14604946 GATAG-TCAGTGTAAGACCATGTTTGGGACATGGCATCAAC-TTG--AGAC
1 GAGAGCT-AGTGTAAGACCATGTTTGGGACATGGCATCGGCATCGATATAC
*
14604993 -ATGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
1 GA-GAGCTAGTGTAAGACCATGTTTGGGACATGGCATC
14605030 AGTATTATAC
Statistics
Matches: 183, Mismatches: 30, Indels: 33
0.74 0.12 0.13
Matches are distributed among these distances:
45 1 0.01
46 21 0.11
47 58 0.32
48 28 0.15
49 37 0.20
50 37 0.20
51 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.24
Consensus pattern (50 bp):
GAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCGATATAC
Found at i:14607507 original size:14 final size:14
Alignment explanation
Indices: 14607488--14607524 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
14607478 AACTTTCAAG
14607488 ATAATTCAAAACTC
1 ATAATTCAAAACTC
14607502 ATAATTCAAAACTC
1 ATAATTCAAAACTC
14607516 ATATATTCA
1 ATA-ATTCA
14607525 TATTCCGGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.49, C:0.19, G:0.00, T:0.32
Consensus pattern (14 bp):
ATAATTCAAAACTC
Found at i:14607755 original size:38 final size:38
Alignment explanation
Indices: 14607696--14607941 Score: 168
Period size: 38 Copynumber: 6.0 Consensus size: 38
14607686 TTTCAAATTA
* *
14607696 ACATGTATAACCATGGCATATCCACTTAGCACCACATT
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCACATT
* *
14607734 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATGA
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCAC----AT-T
* * * * **
14607777 ATCAATATATGTAACCGTTGCATACCCACTTAGCATCATGTT
1 A-C-ATGT-T-TAACCGTGGCATATCCACTTAGCACCACATT
* * *
14607819 ACATGTTTAACCATGGTATATCCACTTAGCACCACGTTAATG
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCAC----ATT
* *
14607861 ACTCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 A--C-ATGT-T-TAACCGTGGCATATCCACTTAGCACCACATT
* * *
14607904 ACACGTATAACCGTGGTATATCCACTTAGCACCACATT
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCACATT
14607942 TTTCATTCCG
Statistics
Matches: 159, Mismatches: 31, Indels: 36
0.70 0.14 0.16
Matches are distributed among these distances:
38 83 0.52
39 1 0.01
40 5 0.03
41 2 0.01
42 5 0.03
43 4 0.03
44 2 0.01
45 6 0.04
46 2 0.01
47 49 0.31
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.29
Consensus pattern (38 bp):
ACATGTTTAACCGTGGCATATCCACTTAGCACCACATT
Found at i:14607806 original size:85 final size:85
Alignment explanation
Indices: 14607703--14607938 Score: 382
Period size: 85 Copynumber: 2.8 Consensus size: 85
14607693 TTAACATGTA
* *
14607703 TAACCATGGCATATCCACTTAGCACCACATTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
14607768 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
* * * * *
14607788 TAACCGTTGCATACCCACTTAGCATCATGTTACATGTTTAACCATGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
*
14607853 CGTTAATGACTCAATATATG
66 CGTTAATGAATCAATATATG
* *
14607873 TAACCGTGGCATATCCACTTAGCACCACGTTACACGTATAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
14607938 C
66 C
14607939 ATTTTTCATT
Statistics
Matches: 136, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
85 136 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.29
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
CGTTAATGAATCAATATATG
Found at i:14607810 original size:47 final size:47
Alignment explanation
Indices: 14607741--14607904 Score: 184
Period size: 47 Copynumber: 3.7 Consensus size: 47
14607731 ATTACATGTT
*
14607741 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * * * *
14607788 TAACCGTTGCATACCCACTTAGCATCATG-T--T--A-C-ATGT-T-
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * *
14607826 TAACCATGGTATATCCACTTAGCACCACGTTAATGACTCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
14607873 TAACCGTGGCATATCCACTTAGCACCACGTTA
1 TAACCGTGGCATATCCACTTAGCACCACGTTA
14607905 CACGTATAAC
Statistics
Matches: 92, Mismatches: 16, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
38 23 0.25
39 2 0.02
40 3 0.03
41 2 0.02
42 1 0.01
44 2 0.02
45 3 0.03
46 2 0.02
47 54 0.59
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (47 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:14610204 original size:15 final size:15
Alignment explanation
Indices: 14610186--14610227 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
14610176 GAAGTCCAGA
14610186 ATAAGGAAATCCAAG
1 ATAAGGAAATCCAAG
* *
14610201 ATAAAGAAATCCATG
1 ATAAGGAAATCCAAG
14610216 ATAAGGAAATCC
1 ATAAGGAAATCC
14610228 CATTTACAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.52, C:0.14, G:0.17, T:0.17
Consensus pattern (15 bp):
ATAAGGAAATCCAAG
Found at i:14613521 original size:38 final size:38
Alignment explanation
Indices: 14613478--14613693 Score: 189
Period size: 38 Copynumber: 5.2 Consensus size: 38
14613468 TTGCAAATTA
14613478 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* * *
14613516 ACATGTTTAACCGTGGTATATCCACTTGGCACCACGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
*
14613557 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
* * *
14613601 ACATGTTTAACCGTGGTATATCCACTTGGCACCACGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
* *
14613642 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCATGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
14613686 ACATGTAT
1 ACATGTAT
14613694 CCATATGTGT
Statistics
Matches: 143, Mismatches: 17, Indels: 36
0.73 0.09 0.18
Matches are distributed among these distances:
38 61 0.43
39 2 0.01
40 7 0.05
41 4 0.03
42 2 0.01
43 2 0.01
44 4 0.03
45 6 0.04
46 2 0.01
47 53 0.37
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:14613574 original size:47 final size:47
Alignment explanation
Indices: 14613523--14613734 Score: 262
Period size: 47 Copynumber: 4.7 Consensus size: 47
14613513 GTTACATGTT
*
14613523 TAACCGTGGTATATCCACTTGGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
* *
14613570 TAACCGTGGCATATCCACTTAGCACCACG-T--T--A-C-ATGT-T-
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
*
14613608 TAACCGTGGTATATCCACTTGGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * * * *
14613655 TAACCGTGGCATATCCACTTAGCACCATGTTACATGTATCCATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
*
14613703 TAATCGTGGTATATCCACTTAGCACCACGTTA
1 TAACCGTGGTATATCCACTTAGCACCACGTTA
14613735 CACGTATAAT
Statistics
Matches: 140, Mismatches: 15, Indels: 19
0.80 0.09 0.11
Matches are distributed among these distances:
38 27 0.19
39 2 0.01
40 3 0.02
41 2 0.01
42 1 0.01
43 1 0.01
44 2 0.01
45 3 0.02
46 2 0.01
47 56 0.40
48 41 0.29
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (47 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:14613584 original size:85 final size:85
Alignment explanation
Indices: 14613485--14613691 Score: 405
Period size: 85 Copynumber: 2.4 Consensus size: 85
14613475 TTAACATGTA
14613485 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTGGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTGGCACCA
14613550 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
14613570 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTGGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTGGCACCA
14613635 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
*
14613655 TAACCGTGGCATATCCACTTAGCACCATGTTACATGT
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT
14613692 ATCCATATGT
Statistics
Matches: 121, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 121 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTGGCACCA
CGTTAATGAATCAATATATG
Found at i:14613718 original size:48 final size:48
Alignment explanation
Indices: 14613603--14613741 Score: 190
Period size: 48 Copynumber: 2.9 Consensus size: 48
14613593 ACCACGTTAC
* * *
14613603 ATGTTTAACCGTGGTATATCCACTTGGCACCACGTTA-ATGAATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* * * *
14613650 ATATGTAACCGTGGCATATCCACTTAGCACCATGTTACATGTATCCAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* *
14613698 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACACGTAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTAT
14613742 AATTATGGTA
Statistics
Matches: 79, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
47 32 0.41
48 47 0.59
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.32
Consensus pattern (48 bp):
ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
Found at i:14613732 original size:133 final size:132
Alignment explanation
Indices: 14613523--14613768 Score: 357
Period size: 133 Copynumber: 1.9 Consensus size: 132
14613513 GTTACATGTT
* *
14613523 TAACCGTGGTATATCCACTTGGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
* * * *
14613588 TTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTGGCACCACGTTAATGAATCAATATA
66 TTAGCACCACGTTACACGTATAACCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATA
14613653 TG
131 TG
* * * * * *
14613655 TAACCGTGGCATATCCACTTAGCACCATGTTACATGTATCCATATGTGTAATCGTGGTATATCCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAACCGTGGCATATCCA
**
14613720 CTTAGCACCACGTTACACGTATAATTATGGTATATCCACTTAGCACCAC
65 CTTAGCACCACGTTACACGTATAACCATGGTATATCCACTTAGCACCAC
14613769 ATTTTTTCAT
Statistics
Matches: 99, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
132 29 0.29
133 70 0.71
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (132 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
TTAGCACCACGTTACACGTATAACCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATA
TG
Found at i:14616168 original size:46 final size:45
Alignment explanation
Indices: 14616116--14616206 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 45
14616106 TCTATTGCCT
*
14616116 AAATTTTGCCTCCCATTCTCCACTATTTTCTTCCCATTTTCATCCC
1 AAATTTTGCCTCCCATTCTCCACTATTTT-ATCCCATTTTCATCCC
** *
14616162 AAATTTTGCCTCTTATTCTCCACTATTTTATCCCTTTTTCATCCC
1 AAATTTTGCCTCCCATTCTCCACTATTTTATCCCATTTTCATCCC
14616207 TTTTCTAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
45 14 0.34
46 27 0.66
ACGTcount: A:0.18, C:0.34, G:0.02, T:0.46
Consensus pattern (45 bp):
AAATTTTGCCTCCCATTCTCCACTATTTTATCCCATTTTCATCCC
Found at i:14619140 original size:42 final size:42
Alignment explanation
Indices: 14619036--14619186 Score: 130
Period size: 43 Copynumber: 3.5 Consensus size: 42
14619026 CTAAGAGCAC
* * * *
14619036 GTCTGGGACATTGGCATCG-ACTTCTGTTTTATGTGTAAGACCAT
1 GTCTGGGACAGTGGCATCGTA--TCTGATTT-CGTGTAAGACCCT
*
14619080 GTCTGGGACA-TCGACATCGTATCTGATTTCGTGTAAGACCCT
1 GTCTGGGACAGT-GGCATCGTATCTGATTTCGTGTAAGACCCT
* * * *
14619122 GTCTGGGACAGTGGCATCGATGTTTGATTGCATGTAAGACCAC-
1 GTCTGGGACAGTGGCATCG-TATCTGATTTCGTGTAAGACC-CT
14619165 GTCTGGGAC-GTTGGCATCGTAT
1 GTCTGGGACAG-TGGCATCGTAT
14619187 ATGCTTCTCG
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
42 30 0.33
43 43 0.47
44 17 0.19
45 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.32
Consensus pattern (42 bp):
GTCTGGGACAGTGGCATCGTATCTGATTTCGTGTAAGACCCT
Found at i:14619757 original size:23 final size:25
Alignment explanation
Indices: 14619731--14619781 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 25
14619721 TTTGGCTTGA
*
14619731 TTATGG-ATATGTT-TATGAATG-AG
1 TTATGGTATAAGTTATATG-ATGAAG
14619754 TTATGGTATAAGTTATATGATGAAG
1 TTATGGTATAAGTTATATGATGAAG
14619779 TTA
1 TTA
14619782 AGTTTATGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 6 0.25
24 9 0.38
25 9 0.38
ACGTcount: A:0.33, C:0.00, G:0.24, T:0.43
Consensus pattern (25 bp):
TTATGGTATAAGTTATATGATGAAG
Found at i:14626364 original size:30 final size:31
Alignment explanation
Indices: 14626316--14626373 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 31
14626306 TTTTCGAGCC
14626316 TAGGGGAAAAATCATAATTCTG-CAAAGGTT
1 TAGGGGAAAAATCATAATTCTGCCAAAGGTT
* ** *
14626346 TAGGGGCAAAATTGTAATTTTGCCAAAG
1 TAGGGGAAAAATCATAATTCTGCCAAAG
14626374 TTTGAGTTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
30 18 0.78
31 5 0.22
ACGTcount: A:0.38, C:0.10, G:0.24, T:0.28
Consensus pattern (31 bp):
TAGGGGAAAAATCATAATTCTGCCAAAGGTT
Found at i:14627256 original size:47 final size:47
Alignment explanation
Indices: 14627136--14627257 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
14627126 GCATTGGCAC
*
14627136 TAAGACAAGGATACCATGTAAGACCACGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
14627183 TAAGACAAGGATACCATGTGAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* * * *
14627230 TAAGATAAAGATATCATGTAAAACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
14627258 CCAAGGCTTG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:14627362 original size:55 final size:54
Alignment explanation
Indices: 14627244--14627432 Score: 202
Period size: 55 Copynumber: 3.5 Consensus size: 54
14627234 ATAAAGATAT
* * * * * *
14627244 CATGTAAAACCATGCCAAGGCTTGGCATTGATAAGTTCTATAAGGC-AAGGAAAT
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGG-TAC
* * * *
14627298 CATGGAAGACCATGTCAAGACATGGCATTGATGATTTACTATAAGGCAAAGGTCC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGCAAAGGTAC
* * * *
14627353 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAATGATAC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGGTAC
* *
14627406 CACGTAAGACCATGTCAAGACATGGCA
1 CATGTAAGACCATGCCAAGACATGGCA
14627433 ATGGTAAGTT
Statistics
Matches: 112, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
53 36 0.32
54 31 0.28
55 41 0.37
56 4 0.04
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (54 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGGTAC
Found at i:14627444 original size:53 final size:54
Alignment explanation
Indices: 14627236--14627443 Score: 211
Period size: 53 Copynumber: 3.9 Consensus size: 54
14627226 TTGGTAAGAT
* * * *
14627236 AAAGATATCATGTAAAACCATGCCAAGGCTTGGCATTGATAAGTTCTATAAGGC
1 AAAGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * * * * *
14627290 AAGGAAATCATGGAAGACCATGTCAAGACATGGCATTGATGATTTACTATAAGGC
1 AAAGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGC
* * * * *
14627345 AAAGGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAAGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * * *
14627398 AATGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAAGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
14627444 AAAAAGGAAA
Statistics
Matches: 126, Mismatches: 27, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
53 45 0.36
54 37 0.29
55 44 0.35
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.23
Consensus pattern (54 bp):
AAAGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:14636908 original size:135 final size:135
Alignment explanation
Indices: 14636666--14636930 Score: 374
Period size: 135 Copynumber: 2.0 Consensus size: 135
14636656 AAATAGGTGA
* *
14636666 TGTGACAGCCCTAAAATGACCCTAGTTGGAAAGCGGTTTCGGGACCGCTAAACCGAGTCACCAAA
1 TGTGACAGCCCTAAAATGACCCTAGTCGGAAAGCGGTTTCGGGACCACTAAACCGAGTCACCAAA
* * *
14636731 TTATTTGAATATGATATTTATTGTCTAAAATATGTGAATATGAATGTGTGAAAGTTTTAAGCTTC
66 TTATTTGAATATGATACTTATTGTCTAAAATATGTGAATATGAATGTGTGAAAATTTCAAGCTTC
14636796 GATTT
131 GATTT
* * *
14636801 TGTGACAGCCC-AAAGTTGACCCTAGTCGGGAAGTGGTTTCGGGACCACTAAACCGAGTCACCGA
1 TGTGACAGCCCTAAA-ATGACCCTAGTCGGAAAGCGGTTTCGGGACCACTAAACCGAGTCACC-A
* * * *
14636865 AA-TGTTTGAATGTGATACTTATTGTGTAGAATATGT-AATTATGAATGTGTGAAAATTTCAAGC
64 AATTATTTGAATATGATACTTATTGTCTAAAATATGTGAA-TATGAATGTGTGAAAATTTCAAGC
14636928 TTC
128 TTC
14636931 AATTGGGTTG
Statistics
Matches: 115, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
134 5 0.04
135 107 0.93
136 3 0.03
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.31
Consensus pattern (135 bp):
TGTGACAGCCCTAAAATGACCCTAGTCGGAAAGCGGTTTCGGGACCACTAAACCGAGTCACCAAA
TTATTTGAATATGATACTTATTGTCTAAAATATGTGAATATGAATGTGTGAAAATTTCAAGCTTC
GATTT
Found at i:14657334 original size:14 final size:15
Alignment explanation
Indices: 14657315--14657357 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
14657305 GCAACAAAAA
14657315 ATAAAAAGAAAAACT
1 ATAAAAAGAAAAACT
**
14657330 A-AAAACTAAAAACT
1 ATAAAAAGAAAAACT
14657344 ATAAGAAAGAAAAA
1 ATAA-AAAGAAAAA
14657358 TGAATAAACT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
14 12 0.55
15 3 0.14
16 7 0.32
ACGTcount: A:0.74, C:0.07, G:0.07, T:0.12
Consensus pattern (15 bp):
ATAAAAAGAAAAACT
Found at i:14658989 original size:43 final size:43
Alignment explanation
Indices: 14658940--14659106 Score: 176
Period size: 43 Copynumber: 3.9 Consensus size: 43
14658930 GATTACCGAG
* * *
14658940 ATGTGATTCCATGTAAGACCATGTCTGGGTCATTGGCATTATT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCATT
* ** * *
14658983 TTGTGATTATGTGTAAGACCATCTCTGGGAGATTGGCATCATT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCATT
* ***
14659026 ATATGATTTTGTGTAAGACCATGTCTGGGACATTGGCATCGA-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATC-ATT
* * *
14659069 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT
14659107 TGTATGAGCT
Statistics
Matches: 103, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
42 6 0.06
43 96 0.93
44 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.35
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCATT
Found at i:14662269 original size:27 final size:27
Alignment explanation
Indices: 14662249--14662399 Score: 189
Period size: 27 Copynumber: 5.6 Consensus size: 27
14662239 TACCCCATAA
*
14662249 GGGTATCTCGATAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
* * *
14662276 GGGTATTT-TAGTAATTTTACCCTACAA
1 GGGTATTTCGA-TAATTCTACCCTACAG
* *
14662303 GGGTATTTCGGTAATTTTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
14662330 GGGTATTTC-AGTAATTCTACCCTACAG
1 GGGTATTTCGA-TAATTCTACCCTACAG
* *
14662357 GGGTATTTCAATAATTCTACCCTAGAG
1 GGGTATTTCGATAATTCTACCCTACAG
*
14662384 GGGTATTTCAATAATT
1 GGGTATTTCGATAATT
14662400 TTGTAAATCG
Statistics
Matches: 110, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
26 1 0.01
27 108 0.98
28 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGGTATTTCGATAATTCTACCCTACAG
Found at i:14662278 original size:54 final size:54
Alignment explanation
Indices: 14662220--14662386 Score: 138
Period size: 54 Copynumber: 3.1 Consensus size: 54
14662210 TTAACACCCT
* * *
14662220 AGGGGCAAAATGGTAGTTTTACCCCATAAGGGTATCTCGATAATTCTACCCTAC
1 AGGGGCAAAATAGTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTAC
* *** * * * *
14662274 AGGGGTATTTTAGTAATTTTACCCTACAAGGGTATTTCGGTAATTTTACCCTAC
1 AGGGGCAAAATAGTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTAC
* ** * * * * * *
14662328 AGGGG-TATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTAG
1 AGGGGCAAAAT-AGTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTAC
14662382 AGGGG
1 AGGGG
14662387 TATTTCAATA
Statistics
Matches: 93, Mismatches: 19, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
53 3 0.03
54 90 0.97
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (54 bp):
AGGGGCAAAATAGTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTAC
Found at i:14662387 original size:54 final size:54
Alignment explanation
Indices: 14662247--14662399 Score: 225
Period size: 54 Copynumber: 2.8 Consensus size: 54
14662237 TTTACCCCAT
* * *
14662247 AAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTTAGTAATTTTACCCTAC
1 AAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTAC
* *
14662301 AAGGGTATTTCGGTAATTTTACCCTACAGGGGTATTTCAGTAATTCTACCCTAC
1 AAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTAC
* * * *
14662355 AGGGGTATTTCAATAATTCTACCCTAGAGGGGTATTTCAATAATT
1 AAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATT
14662400 TTGTAAATCG
Statistics
Matches: 88, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 88 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.35
Consensus pattern (54 bp):
AAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTAC
Found at i:14662414 original size:27 final size:27
Alignment explanation
Indices: 14662384--14662644 Score: 163
Period size: 27 Copynumber: 9.6 Consensus size: 27
14662374 TACCCTAGAG
*
14662384 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTTCAGTAATTTTGTAAATCGA
*** *
14662411 GGGTAAAACGGTAATTTTGTAAATTC-A
1 GGGTATTTCAGTAATTTTGTAAA-TCGA
*
14662438 GGGTACTTT-GGTAATTTT-TACAAGTCGA
1 GGGTA-TTTCAGTAATTTTGTA-AA-TCGA
**
14662466 GGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTGTAAATCGA
* * *
14662493 AGGTATTTCAGTAATTTTGCAAATTGA
1 GGGTATTTCAGTAATTTTGTAAATCGA
* ***
14662520 GGGTATTTCAATAATTTCACAAATC-A
1 GGGTATTTCAGTAATTTTGTAAATCGA
* ** *
14662546 GGGGTATTTCGGTAATTTTACAAA-CCA
1 -GGGTATTTCAGTAATTTTGTAAATCGA
** * *
14662573 GGGGTATTTTGGTAATTTTGTAAACCAA
1 -GGGTATTTCAGTAATTTTGTAAATCGA
* ** ** *
14662601 TGGTATTTTGGTAATTTTACAAGTCGA
1 GGGTATTTCAGTAATTTTGTAAATCGA
*
14662628 GGGTATTTTAGTAATTT
1 GGGTATTTCAGTAATTT
14662645 CACAAATCAG
Statistics
Matches: 191, Mismatches: 34, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
26 4 0.02
27 166 0.87
28 20 0.10
29 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTGTAAATCGA
Found at i:14662649 original size:27 final size:27
Alignment explanation
Indices: 14662437--14662779 Score: 266
Period size: 27 Copynumber: 12.7 Consensus size: 27
14662427 TTGTAAATTC
* * *
14662437 AGGGTACTTTGGTAATTTTTACAAGTCG
1 AGGGTATTTTAGTAA-TTTTACAAATCG
*
14662465 AGGGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTTAGTAATTTTACAAATCG
* * * *
14662492 AAGGTATTTCAGTAATTTTGCAAATTG
1 AGGGTATTTTAGTAATTTTACAAATCG
* * *
14662519 AGGGTATTTCAATAATTTCACAAATC-
1 AGGGTATTTTAGTAATTTTACAAATCG
** *
14662545 AGGGGTATTTCGGTAATTTTACAAA-CC
1 A-GGGTATTTTAGTAATTTTACAAATCG
* ** * *
14662572 AGGGGTATTTTGGTAATTTTGTAAACCA
1 A-GGGTATTTTAGTAATTTTACAAATCG
* * *
14662600 ATGGTATTTTGGTAATTTTACAAGTCG
1 AGGGTATTTTAGTAATTTTACAAATCG
*
14662627 AGGGTATTTTAGTAATTTCACAAATC-
1 AGGGTATTTTAGTAATTTTACAAATCG
* * *
14662653 AGGGGTATTTTGGTAATTTCACAAA-CT
1 A-GGGTATTTTAGTAATTTTACAAATCG
* *
14662680 AGGGGTATTTTGGTAATTTTACAAA-CC
1 A-GGGTATTTTAGTAATTTTACAAATCG
* * *
14662707 AGGGGTATTTT-GATAATTTTATAAACCA
1 A-GGGTATTTTAG-TAATTTTACAAATCG
* * *
14662735 ACGGTTTTTTAGTAATTTTACAAATTG
1 AGGGTATTTTAGTAATTTTACAAATCG
*
14662762 AGGGCATTTTAGTAATTT
1 AGGGTATTTTAGTAATTT
14662780 GATAAACTAA
Statistics
Matches: 264, Mismatches: 43, Indels: 17
0.81 0.13 0.05
Matches are distributed among these distances:
26 5 0.02
27 242 0.92
28 17 0.06
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTTAGTAATTTTACAAATCG
Found at i:14666968 original size:22 final size:24
Alignment explanation
Indices: 14666943--14666986 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
14666933 TGGCACGTTA
14666943 TTTTTGTTC-TGT-TTCTTCTTGG
1 TTTTTGTTCTTGTGTTCTTCTTGG
14666965 TTTTTGTTCTTGTGTTCTTCTT
1 TTTTTGTTCTTGTGTTCTTCTT
14666987 TTTGCTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 9 0.45
23 3 0.15
24 8 0.40
ACGTcount: A:0.00, C:0.14, G:0.16, T:0.70
Consensus pattern (24 bp):
TTTTTGTTCTTGTGTTCTTCTTGG
Found at i:14671947 original size:43 final size:43
Alignment explanation
Indices: 14671843--14671988 Score: 125
Period size: 43 Copynumber: 3.4 Consensus size: 43
14671833 CAATGTCATA
* * ** * *
14671843 TCCCAAATATGGTCTTACATGTTATCACATATCGATGCCACTG
1 TCCCAAACATGGTCTTACACGAAATCACATAACGATGCCAATG
*** * * *
14671886 TCCTGGACAAGGTTTTACACGAAATCATATAACGATGCCAATG
1 TCCCAAACATGGTCTTACACGAAATCACATAACGATGCCAATG
*
14671929 TCCCAAACATGGTCTTACAC-ATAATCACA-ATACAATGCCAATG
1 TCCCAAACATGGTCTTACACGA-AATCACATA-ACGATGCCAATG
* *
14671972 TACCAGACATGGTCTTA
1 TCCCAAACATGGTCTTA
14671989 TATGTAATCA
Statistics
Matches: 80, Mismatches: 21, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
42 2 0.03
43 78 0.98
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (43 bp):
TCCCAAACATGGTCTTACACGAAATCACATAACGATGCCAATG
Found at i:14674035 original size:16 final size:16
Alignment explanation
Indices: 14674014--14674046 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
14674004 ATGTAATGCC
14674014 CCAAAAATCCTGAAAT
1 CCAAAAATCCTGAAAT
*
14674030 CCAAAAATCTTGAAAT
1 CCAAAAATCCTGAAAT
14674046 C
1 C
14674047 TCGAATTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.24, G:0.06, T:0.21
Consensus pattern (16 bp):
CCAAAAATCCTGAAAT
Found at i:14675302 original size:16 final size:16
Alignment explanation
Indices: 14675283--14675325 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
14675273 AAATGCCGAA
14675283 ATGCAGAAAAGTCAAC
1 ATGCAGAAAAGTCAAC
*
14675299 ATGCAGAAAAGTCGAC
1 ATGCAGAAAAGTCAAC
*
14675315 ATGCCGAAAAG
1 ATGCAGAAAAG
14675326 CTAAAAGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.47, C:0.19, G:0.23, T:0.12
Consensus pattern (16 bp):
ATGCAGAAAAGTCAAC
Found at i:14675596 original size:29 final size:28
Alignment explanation
Indices: 14675541--14675602 Score: 88
Period size: 29 Copynumber: 2.2 Consensus size: 28
14675531 GTGAGCATGA
*
14675541 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGACTGGGCCTAACGGGCC
* *
14675569 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-CTGGGCCTAACGGGCC
14675598 ATATA
1 ATATA
14675603 TAGTTGGTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 11 0.37
29 19 0.63
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (28 bp):
ATATAAATGTGACTGGGCCTAACGGGCC
Found at i:14683335 original size:27 final size:28
Alignment explanation
Indices: 14683305--14683365 Score: 70
Period size: 29 Copynumber: 2.2 Consensus size: 28
14683295 GTGAGGATGA
* *
14683305 ATATGAATGT-TCTGGGCTTAACGGGCC
1 ATATAAATGTATCTGGGCCTAACGGGCC
* *
14683332 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGT-ATCTGGGCCTAACGGGCC
14683361 ATATA
1 ATATA
14683366 CAGGTGGTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 9 0.32
29 19 0.68
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (28 bp):
ATATAAATGTATCTGGGCCTAACGGGCC
Done.