Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 45 of 235
Found at i:14683359 original size:29 final size:29
Alignment explanation
Indices: 14683315--14683393 Score: 86
Period size: 29 Copynumber: 2.7 Consensus size: 29
14683305 ATATGAATGT
* * *
14683315 TCTGGGCTTAACGGGCCATATAAATGTGA
1 TCTGGGCCTAATGGGCCATATAAAGGTGA
* * *
14683344 TTTGGGCCTAATGGGCCATATACAGGTGG
1 TCTGGGCCTAATGGGCCATATAAAGGTGA
* *
14683373 TCTGGACCTAGTGGGCCATAT
1 TCTGGGCCTAATGGGCCATAT
14683394 GAATATGACT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (29 bp):
TCTGGGCCTAATGGGCCATATAAAGGTGA
Found at i:14696407 original size:40 final size:40
Alignment explanation
Indices: 14696375--14696567 Score: 266
Period size: 40 Copynumber: 4.8 Consensus size: 40
14696365 GGATATGGCC
* *
14696375 ACTAGCACAAATGCCTTTGGGACTTAGCCCGG-ATGTAGTA
1 ACTAGCACAAATGCCTTCGGGACTTAACCCGGAAT-TAGTA
*
14696415 ACTCGCACAAATGCCTTCGGGACTTAACCCGGAATTAGTA
1 ACTAGCACAAATGCCTTCGGGACTTAACCCGGAATTAGTA
14696455 ACTCA-CACAAATGCCTTCGGGACTTAACCCGGAATTAGTA
1 ACT-AGCACAAATGCCTTCGGGACTTAACCCGGAATTAGTA
* *
14696495 ACTCA-CAAAAATGCCTTCGGGACTTAACCCGGAATTAGTC
1 ACT-AGCACAAATGCCTTCGGGACTTAACCCGGAATTAGTA
* *
14696535 ACTAGCGCAAAATGCCTTCGGGACTTAGCCCGG
1 ACTAGCAC-AAATGCCTTCGGGACTTAACCCGG
14696568 TTATCATCCA
Statistics
Matches: 140, Mismatches: 9, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 1 0.01
40 114 0.81
41 25 0.18
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (40 bp):
ACTAGCACAAATGCCTTCGGGACTTAACCCGGAATTAGTA
Found at i:14704605 original size:40 final size:41
Alignment explanation
Indices: 14704555--14704731 Score: 202
Period size: 40 Copynumber: 4.4 Consensus size: 41
14704545 CGTAAAGCCA
* * *
14704555 TCGGGCCTTAGCCCGGATA-TGGTCACTAGCACAAATGCCT
1 TCGGGACTTAGCCCGGATATTAGTAACTAGCACAAATGCCT
* *
14704595 TCGGGACTTAGCCCGGAT-GTAGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGATATTAGTAACTAGCACAAATGCCT
* * *
14704635 TCGGGACTTAACCCGGA-ATTAGTAACTCGTACAAATGCCT
1 TCGGGACTTAGCCCGGATATTAGTAACTAGCACAAATGCCT
* * *
14704675 TCGGGACTTAACCC-GAAATTAGTCACTAGTGCA-AAATGCCT
1 TCGGGACTTAGCCCGGATATTAGTAACTA--GCACAAATGCCT
14704716 TCGGGACTTAGCCCGG
1 TCGGGACTTAGCCCGG
14704732 TTATCATCCA
Statistics
Matches: 120, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
39 2 0.02
40 94 0.78
41 21 0.17
42 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (41 bp):
TCGGGACTTAGCCCGGATATTAGTAACTAGCACAAATGCCT
Found at i:14716847 original size:40 final size:40
Alignment explanation
Indices: 14716758--14716946 Score: 274
Period size: 40 Copynumber: 4.7 Consensus size: 40
14716748 TGGATGATAA
* *
14716758 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAATT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCG--AGTTACTAATT
* *
14716799 CCGGGTTAAGTCCCGAAGGCATTTTTGTGAGTTACTAATT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
*
14716839 CCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAATT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
14716879 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTACA-T
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATT
* *
14716919 CCGGGCTAAGTCCCAAAGGCATTTGTGC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC
14716947 TAGTGGCCAT
Statistics
Matches: 139, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
40 112 0.81
41 24 0.17
42 3 0.02
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:14716974 original size:120 final size:119
Alignment explanation
Indices: 14716758--14716984 Score: 264
Period size: 120 Copynumber: 1.9 Consensus size: 119
14716748 TGGATGATAA
* *
14716758 CCGGGCTAAGTCCCGAAGGCATTTTGCGCTAGTGACTAATTCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTTGCGC-AGTGACTAATTCCGGGCTAAGTCCCAAAGGCATTT
* * * * *
14716823 TTGTGAGTTACTAATTCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAATT
65 GTGTGAGTGACCAATTCCGGGCTAAGGCCCGAAGGC-TTTGTGTGAGTTACTAATT
* *
14716879 CCGGGTTAAGTCCCGAAGGCATTTGTGCG-AGTTACTACA-TCCGGGCTAAGTCCCAAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCAGTGACTA-ATTCCGGGCTAAGTCCCAAAGGCATT
* * *
14716942 TGTGCT-AGTGGCC-ATATCCGGGCTATGGCCCGATGGCTTTGTG
64 TGTG-TGAGTGACCAAT-TCCGGGCTAAGGCCCGAAGGCTTTGTG
14716985 AGTGGTTATA
Statistics
Matches: 90, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
119 8 0.09
120 53 0.59
121 25 0.28
122 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTTTGCGCAGTGACTAATTCCGGGCTAAGTCCCAAAGGCATTTG
TGTGAGTGACCAATTCCGGGCTAAGGCCCGAAGGCTTTGTGTGAGTTACTAATT
Found at i:14729967 original size:29 final size:29
Alignment explanation
Indices: 14729932--14729998 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
14729922 AGTCATATTC
* * *
14729932 ATATGGCCCACTAGGTCCAGACCACCTGT
1 ATATGGCCCACTAGGCCCAAACCACATGT
* * *
14729961 ATATGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCACTAGGCCCAAACCACATGT
14729990 ATATGGCCC
1 ATATGGCCC
14729999 GTTAAGCCCA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (29 bp):
ATATGGCCCACTAGGCCCAAACCACATGT
Found at i:14737755 original size:29 final size:28
Alignment explanation
Indices: 14737661--14737784 Score: 88
Period size: 29 Copynumber: 4.4 Consensus size: 28
14737651 AAATTCACAT
* * ** *
14737661 ACATGTATCTGGCCCATTAAACCCAGTC
1 ACATTTATATGGCCCATTAGGCCCAATC
* * * * *
14737689 ATATTCATATGGCCCATTAGGTCTAGACC
1 ACATTTATATGGCCCATTAGGCCCA-ATC
*
14737718 A-ACTATATATGGCCCATTAGGCCCAAATC
1 ACA-TTTATATGGCCCATTAGGCCC-AATC
* *
14737747 ACATTTATATGGCCCGTTAGGCCCAGTC
1 ACATTTATATGGCCCATTAGGCCCAATC
*
14737775 ACATTCATAT
1 ACATTTATAT
14737785 TCATGCTCAC
Statistics
Matches: 73, Mismatches: 19, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
28 30 0.41
29 41 0.56
30 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.28
Consensus pattern (28 bp):
ACATTTATATGGCCCATTAGGCCCAATC
Found at i:14738021 original size:16 final size:16
Alignment explanation
Indices: 14738000--14738056 Score: 60
Period size: 16 Copynumber: 3.6 Consensus size: 16
14737990 AAACTTTTAG
14738000 CTTTTCGGCATGTCGA
1 CTTTTCGGCATGTCGA
* *
14738016 CTTTTCTGCATGTTGA
1 CTTTTCGGCATGTCGA
* * *
14738032 CTTTTCTGCATTTCGG
1 CTTTTCGGCATGTCGA
*
14738048 CATTTCGGC
1 CTTTTCGGC
14738057 TTTTGCCAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.11, C:0.25, G:0.21, T:0.44
Consensus pattern (16 bp):
CTTTTCGGCATGTCGA
Found at i:14739300 original size:16 final size:16
Alignment explanation
Indices: 14739279--14739311 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
14739269 GAAAATTCGA
14739279 GATTTCAAGATTTTTG
1 GATTTCAAGATTTTTG
*
14739295 GATTTCAGGATTTTTG
1 GATTTCAAGATTTTTG
14739311 G
1 G
14739312 GGCATTACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.06, G:0.24, T:0.48
Consensus pattern (16 bp):
GATTTCAAGATTTTTG
Found at i:14741417 original size:43 final size:42
Alignment explanation
Indices: 14741337--14741474 Score: 125
Period size: 43 Copynumber: 3.2 Consensus size: 42
14741327 TGATTACATA
* *
14741337 TAAGACCATGTCTGGTACATTGGCATTGTATTGTGATTATGTG
1 TAAGACCATGTCTGGGACATTGGCATCGTA-TGTGATTATGTG
* *
14741380 TAAGACCATGTTTGGGACATTGGCATCGTTATATGATT-TCGTG
1 TAAGACCATGTCTGGGACATTGGCATCG-TATGTGATTAT-GTG
* * ** * * **
14741423 TAAAACCTTGTCCAGGACAGTGGCATCGATATGTGATAACATG
1 TAAGACCATGTCTGGGACATTGGCATCG-TATGTGATTATGTG
14741466 TAAGACCAT
1 TAAGACCAT
14741475 ATTTGGGATA
Statistics
Matches: 75, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
42 1 0.01
43 72 0.96
44 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACATTGGCATCGTATGTGATTATGTG
Found at i:14746379 original size:22 final size:24
Alignment explanation
Indices: 14746339--14746382 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
14746329 AAAAAGCAAA
14746339 AAGAAGAACACAAGAACAAAAACC
1 AAGAAGAACACAAGAACAAAAACC
14746363 AAGAAGAA-AC-AGAACAAAAA
1 AAGAAGAACACAAGAACAAAAA
14746383 TAACGTGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 10 0.50
23 2 0.10
24 8 0.40
ACGTcount: A:0.70, C:0.16, G:0.14, T:0.00
Consensus pattern (24 bp):
AAGAAGAACACAAGAACAAAAACC
Found at i:14750584 original size:27 final size:27
Alignment explanation
Indices: 14750546--14750888 Score: 266
Period size: 27 Copynumber: 12.7 Consensus size: 27
14750536 TTAGTTTATC
* *
14750546 AAATTACTAAAATGCCCTCAATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* * * * *
14750573 AAATTACTAAAAAACCGTTGGTTTATA
1 AAATTACTAAAATACCCTCGATTTGTA
*
14750600 AAATTA-TCAAAATACCC-CTGGTTTGTA
1 AAATTACT-AAAATACCCTC-GATTTGTA
* * *
14750627 AAATTACCAAAATACCC-CTAGTTTGTG
1 AAATTACTAAAATACCCTCGA-TTTGTA
* *
14750654 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACTAAAATACCCTC-GATTTGTA
*
14750681 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* * * * **
14750708 AAATTACCAAAATACCATTGGTTTACA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
14750735 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACTAAAATACCCTC-GATTTGTA
** *
14750762 AAATTACCGAAATACCC-CTGATTTGTG
1 AAATTACTAAAATACCCTC-GATTTGTA
* * * *
14750789 AAATTATTGAAATACCCTCAATTTGCA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
14750816 AAATTACTGAAATACCTTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
14750843 AAATTACTGAAATACCCTCGACTTGTAA
1 AAATTACTAAAATACCCTCGATTTGT-A
* *
14750871 AAATTACCAAAGTACCCT
1 AAATTACTAAAATACCCT
14750889 GAATTTACAA
Statistics
Matches: 260, Mismatches: 47, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
26 1 0.00
27 240 0.92
28 19 0.07
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTTGTA
Found at i:14750940 original size:27 final size:27
Alignment explanation
Indices: 14750681--14750941 Score: 163
Period size: 27 Copynumber: 9.6 Consensus size: 27
14750671 CTGATTTGTG
* * **
14750681 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTACA
** * * *
14750708 AAATTACCAAAATACCATTGGTTTACA
1 AAATTACTGAAATACCCTCGATTTACA
** * **
14750735 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACTGAAATACCCTC-GATTTACA
* ***
14750762 AAATTACCGAAATACCC-CTGATTTGTG
1 AAATTACTGAAATACCCTC-GATTTACA
* * *
14750789 AAATTATTGAAATACCCTCAATTTGCA
1 AAATTACTGAAATACCCTCGATTTACA
* **
14750816 AAATTACTGAAATACCTTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTACA
14750843 AAATTACTGAAATACCCTCGACTTGTA-A
1 AAATTACTGAAATACCCTCGA-TT-TACA
*
14750871 AAATTAC-CAAAGTACCCT-GAATTTACA
1 AAATTACTGAAA-TACCCTCG-ATTTACA
* ***
14750898 AAATTACCGTTTTACCCTCGATTTACA
1 AAATTACTGAAATACCCTCGATTTACA
*
14750925 AAATTATTGAAATACCC
1 AAATTACTGAAATACCC
14750942 CTCTAGGGTA
Statistics
Matches: 190, Mismatches: 35, Indels: 18
0.78 0.14 0.07
Matches are distributed among these distances:
26 2 0.01
27 168 0.88
28 19 0.10
29 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTACA
Found at i:14750956 original size:27 final size:27
Alignment explanation
Indices: 14750926--14751065 Score: 208
Period size: 27 Copynumber: 5.2 Consensus size: 27
14750916 CGATTTACAA
* *
14750926 AATTATTGAAATACCCCTCTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
14750953 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
14750980 AATTACTGAAATACCCCTGTAGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
14751007 AATTACCGAAATACCCTTGTAGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
*
14751034 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
14751061 AATTA
1 AATTA
14751066 TCGAGATACC
Statistics
Matches: 104, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 104 1.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:14751075 original size:81 final size:81
Alignment explanation
Indices: 14750924--14751094 Score: 218
Period size: 81 Copynumber: 2.1 Consensus size: 81
14750914 CTCGATTTAC
** * * *
14750924 AAAATTATTGAAATACCCCTCTAGGGTAGAATTATTGAAATACCCCTGTAGGGTAGAATTACTGA
1 AAAATTACCGAAATACCCCTCTAGGGTAAAATTACTAAAATACCCCTGTAGGGTAGAATTACTGA
*
14750989 AATACCCCTGTAGGGT
66 AATACCCCTATAGGGT
* *
14751005 AAAATTACCGAAATACCCTTGTAGGGTAAAATTACTAAAATACCCCTGTAGGGTAGAATTA-TCG
1 AAAATTACCGAAATACCCCTCTAGGGTAAAATTACTAAAATACCCCTGTAGGGTAGAATTACT-G
* * *
14751069 AGATACCCTTATGGGGT
65 AAATACCCCTATAGGGT
*
14751086 AAAACTACC
1 AAAATTACC
14751095 ATTTTGCCCC
Statistics
Matches: 77, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 1 0.01
81 76 0.99
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (81 bp):
AAAATTACCGAAATACCCCTCTAGGGTAAAATTACTAAAATACCCCTGTAGGGTAGAATTACTGA
AATACCCCTATAGGGT
Found at i:14751077 original size:54 final size:54
Alignment explanation
Indices: 14750924--14751089 Score: 233
Period size: 54 Copynumber: 3.1 Consensus size: 54
14750914 CTCGATTTAC
* * * *
14750924 AAAATTATTGAAATACCCCTCTAGGGTAGAATTATTGAAATACCCCTGTAGGGT
1 AAAATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGT
* * *
14750978 AGAATTACTGAAATACCCCTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGT
1 AAAATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGT
* * * *
14751032 AAAATTACTAAAATACCCCTGTAGGGTAGAATTATCGAGATACCCTTATGGGGT
1 AAAATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGT
14751086 AAAA
1 AAAA
14751090 CTACCATTTT
Statistics
Matches: 98, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 98 1.00
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (54 bp):
AAAATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGT
Found at i:14754384 original size:43 final size:43
Alignment explanation
Indices: 14754219--14754374 Score: 172
Period size: 43 Copynumber: 3.7 Consensus size: 43
14754209 AGCTCATACA
* * ** * *
14754219 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCAC-ATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACATAATCACAAAAT-G
* * *
14754261 ATGCCAATGTCCCAGACATGGTCTTACACAAAATCATATAATG
1 ATGCCAATGTCCCAGACATGGTCTTACACATAATCACAAAATG
* * *
14754304 ATGCCAATCTCCCAGAGATGGTCTTACACATAATCACAAAATA
1 ATGCCAATGTCCCAGACATGGTCTTACACATAATCACAAAATG
*
14754347 ATGCCAATGACCCAGACATGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
14754375 TGGAATCACA
Statistics
Matches: 94, Mismatches: 18, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
42 5 0.05
43 87 0.93
44 2 0.02
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACATAATCACAAAATG
Found at i:14762113 original size:37 final size:37
Alignment explanation
Indices: 14762054--14762162 Score: 175
Period size: 37 Copynumber: 2.9 Consensus size: 37
14762044 AGCTCAGACG
*
14762054 AAATCTCCACACGA-AGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACAC-ATAGTCATCGGGTCTTACCCGGACA
14762091 AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
* *
14762128 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACATAGTCATCGGGTCTTACCCGGA
14762163 ATATATTTCC
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
36 1 0.01
37 67 0.99
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
Found at i:14762363 original size:48 final size:48
Alignment explanation
Indices: 14762309--14762568 Score: 237
Period size: 48 Copynumber: 5.7 Consensus size: 48
14762299 GCACATCGCC
* * *
14762309 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCG
1 TACATATTTCACATTAGCCATTCGGCCTTACCACATATACATATCTCA
*
14762357 TACATA--T----TT---CATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCCTTACCACATATACATATCTCA
* * * *
14762396 TACATATTTCACATTAGCCATTCGGCCTTATCACACATGCATGT-TC-
1 TACATATTTCACATTAGCCATTCGGCCTTACCACATATACATATCTCA
* * * * * * *
14762442 -ACAT-TCATCACATTGGCCATTCGGCCTTATCAC--A-CCACATCGCC
1 TACATAT-TTCACATTAGCCATTCGGCCTTACCACATATACATATCTCA
* *
14762486 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCCTTACCACATATACATATCTCA
*
14762534 TACATATTTCACATTAGCCATTCGGCCTTATCACA
1 TACATATTTCACATTAGCCATTCGGCCTTACCACA
14762569 CATGCATGTT
Statistics
Matches: 170, Mismatches: 25, Indels: 34
0.74 0.11 0.15
Matches are distributed among these distances:
39 35 0.21
41 1 0.01
42 4 0.02
43 2 0.01
44 1 0.01
45 57 0.34
46 2 0.01
47 3 0.02
48 65 0.38
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.33
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCCTTACCACATATACATATCTCA
Found at i:14762372 original size:39 final size:39
Alignment explanation
Indices: 14762327--14762406 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
14762317 TCACACTAGC
*
14762327 CATTCGGCTTTACCACATATACATATCTCGTACATATTT
1 CATTCGGCTTTACCACATATACATATCTCATACATATTT
14762366 CATTCGGCTTTACCACATATACATATCTCATACATATTT
1 CATTCGGCTTTACCACATATACATATCTCATACATATTT
14762405 CA
1 CA
14762407 CATTAGCCAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.38
Consensus pattern (39 bp):
CATTCGGCTTTACCACATATACATATCTCATACATATTT
Found at i:14762461 original size:45 final size:46
Alignment explanation
Indices: 14762396--14762610 Score: 219
Period size: 45 Copynumber: 4.7 Consensus size: 46
14762386 ACATATCTCA
*
14762396 TACATATTTCACATTAGCCATTCGGCCTTATCACACATGCATGTTC
1 TACATATATCACATTAGCCATTCGGCCTTATCACACATGCATGTTC
* *
14762442 -ACAT-TCATCACATTGGCCATTCGGCCTTATCACACCA--CATCG-CC
1 TACATAT-ATCACATTAGCCATTCGGCCTTATCACA-CATGCAT-GTTC
* * * * * * *
14762486 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC
1 TACATATATCACATTAGCCATTCGGCCTTATCACACATGCATGT-TC
*
14762533 ATACATATTTCACATTAGCCATTCGGCCTTATCACACATGCATGTTC
1 -TACATATATCACATTAGCCATTCGGCCTTATCACACATGCATGTTC
*
14762580 -ACAT-TCATCACATTGGCCATTCGGCCTTATC
1 TACATAT-ATCACATTAGCCATTCGGCCTTATC
14762611 TCATATATAT
Statistics
Matches: 139, Mismatches: 19, Indels: 23
0.77 0.10 0.13
Matches are distributed among these distances:
44 7 0.05
45 85 0.61
46 6 0.04
47 3 0.02
48 38 0.27
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.32
Consensus pattern (46 bp):
TACATATATCACATTAGCCATTCGGCCTTATCACACATGCATGTTC
Found at i:14770713 original size:33 final size:32
Alignment explanation
Indices: 14770676--14770777 Score: 105
Period size: 33 Copynumber: 3.1 Consensus size: 32
14770666 ATGTAAGACT
* *
14770676 ATAGCTGGACTATAGCATCCTGATGATAAGATC
1 ATAGCTGGGCTAT-GCATCATGATGATAAGATC
* * *
14770709 ATAGCTGGGTTATGGCATCTTGATGATAAAATC
1 ATAGCTGGGCTAT-GCATCATGATGATAAGATC
* * *
14770742 ATAGTTGGGCTATGACATTATGATGATAAGACC
1 ATAGCTGGGCTATG-CATCATGATGATAAGATC
14770775 ATA
1 ATA
14770778 ACCAGGTTAC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
32 1 0.02
33 56 0.98
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (32 bp):
ATAGCTGGGCTATGCATCATGATGATAAGATC
Found at i:14771346 original size:28 final size:26
Alignment explanation
Indices: 14771278--14771344 Score: 111
Period size: 26 Copynumber: 2.6 Consensus size: 26
14771268 CCCTCCCCCC
14771278 AAAAAAACCTAA-CCCAAAAAAAAAG
1 AAAAAAACCTAACCCCAAAAAAAAAG
14771303 AAAAAAACCTAACCCCAAAAAAAAA-
1 AAAAAAACCTAACCCCAAAAAAAAAG
14771328 AAGAAAAACCTAACCCC
1 AA-AAAAACCTAACCCC
14771345 CCCAAAAAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
25 14 0.35
26 26 0.65
ACGTcount: A:0.67, C:0.25, G:0.03, T:0.04
Consensus pattern (26 bp):
AAAAAAACCTAACCCCAAAAAAAAAG
Found at i:14771351 original size:28 final size:27
Alignment explanation
Indices: 14771278--14771354 Score: 99
Period size: 26 Copynumber: 3.0 Consensus size: 27
14771268 CCCTCCCCCC
14771278 AAAAAAACCTAA--CCCAAAAAAAAAG
1 AAAAAAACCTAACCCCCAAAAAAAAAG
14771303 AAAAAAACCTAA-CCCCAAAAAAAAA-
1 AAAAAAACCTAACCCCCAAAAAAAAAG
**
14771328 AAGAAAAACCTAACCCCCCCAAAAAAA
1 AA-AAAAACCTAACCCCCAAAAAAAAA
14771355 CCAAGAAACC
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
25 14 0.30
26 22 0.47
27 11 0.23
ACGTcount: A:0.68, C:0.26, G:0.03, T:0.04
Consensus pattern (27 bp):
AAAAAAACCTAACCCCCAAAAAAAAAG
Found at i:14773686 original size:12 final size:12
Alignment explanation
Indices: 14773669--14773704 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
14773659 ATTCATTTGA
14773669 CATTCATGCATT
1 CATTCATGCATT
14773681 CATTCATGCATT
1 CATTCATGCATT
*
14773693 CATTCATACATT
1 CATTCATGCATT
14773705 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:14787551 original size:40 final size:40
Alignment explanation
Indices: 14787507--14787734 Score: 343
Period size: 40 Copynumber: 5.7 Consensus size: 40
14787497 GCTACTTGCT
14787507 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
14787547 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
14787587 CAAATGCCTTCGGGACTTTGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
14787627 CAAATGCCGTCGGGACTTAGCCCGGATATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
14787667 CAAATGCCTTCGAG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
14787706 CAAATGCCTTTGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
14787735 CATCCGAATG
Statistics
Matches: 169, Mismatches: 16, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
38 1 0.01
39 31 0.18
40 136 0.80
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:14788611 original size:262 final size:263
Alignment explanation
Indices: 14788146--14788675 Score: 1044
Period size: 262 Copynumber: 2.0 Consensus size: 263
14788136 TTTTAATCAC
*
14788146 ATTGAGCAATTTAATACAGTTAATCTAACATTTCCTCATGTGCACCTTTATGACCGAATACACAC
1 ATTGAGCAATTTAATACAATTAATCTAACATTTCCTCATGTGCACCTTTATGACCGAATACACAC
14788211 ATCATTAACCTAATATCAATTAATTAAGCACTTTAACAAATTCTCCTTGAGCCGATTATCTAAGT
66 ATCATTAACCTAATATCAATTAATTAAGCACTTTAACAAATTCTCCTTGAGCCGATTATCTAAGT
14788276 CAAGATAGATTCATCATTATGCTCGCCTATAACCGAATACATGCTACACCAATCTATCTCATGTG
131 CAAGATAGATTCATCATTATGCTCGCCTATAACCGAATACATGCTACACCAATCTATCTCATGTG
14788341 GCCGAATATGCATGTCTATGTTGAGGCCAATTATATGCTTAATACTTCCTACAAATATGGTTACT
196 GCCGAATATGCATGTCTATGTTGAGGCCAATTATATGCTTAATACTTCCTACAAATATGGTTACT
14788406 T-T
261 TGT
14788408 ATTGAGCAATTTAATACAATTAATCTAACATTTCCTCATGTGCACCTTTATGACCGAATACACAC
1 ATTGAGCAATTTAATACAATTAATCTAACATTTCCTCATGTGCACCTTTATGACCGAATACACAC
14788473 ATCATTAACCTAATATCAATTAATTAAGCACTTTAACAAATTCTCCTTGAGCCGATTATCTAAGT
66 ATCATTAACCTAATATCAATTAATTAAGCACTTTAACAAATTCTCCTTGAGCCGATTATCTAAGT
14788538 CAAGATAGATTCATCATTATGCTCGCCTATAACCGAATACATGCTACACCAATCTATCTCATGTG
131 CAAGATAGATTCATCATTATGCTCGCCTATAACCGAATACATGCTACACCAATCTATCTCATGTG
14788603 GCCGAATATGCATGTCTATGTTGAGGCCAATTATATGCTTAATACTTCCTACAAATATGGTTACT
196 GCCGAATATGCATGTCTATGTTGAGGCCAATTATATGCTTAATACTTCCTACAAATATGGTTACT
14788668 TGT
261 TGT
14788671 ATTGA
1 ATTGA
14788676 CTACATACCA
Statistics
Matches: 266, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
262 260 0.98
263 6 0.02
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.34
Consensus pattern (263 bp):
ATTGAGCAATTTAATACAATTAATCTAACATTTCCTCATGTGCACCTTTATGACCGAATACACAC
ATCATTAACCTAATATCAATTAATTAAGCACTTTAACAAATTCTCCTTGAGCCGATTATCTAAGT
CAAGATAGATTCATCATTATGCTCGCCTATAACCGAATACATGCTACACCAATCTATCTCATGTG
GCCGAATATGCATGTCTATGTTGAGGCCAATTATATGCTTAATACTTCCTACAAATATGGTTACT
TGT
Found at i:14793461 original size:57 final size:58
Alignment explanation
Indices: 14793331--14793473 Score: 173
Period size: 57 Copynumber: 2.5 Consensus size: 58
14793321 CTCATTTATG
* * * * **
14793331 AAAGGATTTAGCCTGGACGGGTAATCCTAATATAAGCCCTTTCGAGCATATGTTATGG
1 AAAGGATTTAGCCTGGACTGGTAATCCTAATACAAGCCCTTTAGAGCATATGTCATAA
** * *
14793389 ATTGTATTTAGCCTGGACTGGTAATCC-AGAT-CAAGCTCTTTAGAGCATATGTCATAA
1 AAAGGATTTAGCCTGGACTGGTAATCCTA-ATACAAGCCCTTTAGAGCATATGTCATAA
14793446 AAAGGATTTAGCCTGGACTGGTAATCCT
1 AAAGGATTTAGCCTGGACTGGTAATCCT
14793474 GTTGTCTATA
Statistics
Matches: 70, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
57 45 0.64
58 25 0.36
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.31
Consensus pattern (58 bp):
AAAGGATTTAGCCTGGACTGGTAATCCTAATACAAGCCCTTTAGAGCATATGTCATAA
Found at i:14804860 original size:40 final size:39
Alignment explanation
Indices: 14804776--14804960 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
14804766 TCGAATGATG
* * * *
14804776 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
14804816 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
14804856 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
14804895 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
14804936 -CCGGGCTATGTCTCGAAGGCATTTG
1 TCCGGGCTAAGTC-CGAAGGCATTTG
14804961 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 36 0.29
40 79 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:14804912 original size:79 final size:81
Alignment explanation
Indices: 14804776--14804958 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
14804766 TCGAATGATG
* *
14804776 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
14804840 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
14804855 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
14804917 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* * *
14804935 ACCGGGCTATGTCTCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
14804959 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 29 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:14804982 original size:79 final size:79
Alignment explanation
Indices: 14804829--14804993 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
14804819 GGACTAAGAT
* **
14804829 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
14804894 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
14804908 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCTCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* * *
14804971 TATAT-CTGGTTAAATT
63 TAAATCCGGGTTAAATC
14804987 CCGAAGG
1 CCGAAGG
14804994 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 50 0.68
80 21 0.29
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:14806916 original size:27 final size:26
Alignment explanation
Indices: 14806872--14806923 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
14806862 CTTGCTGCAA
*
14806872 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
14806899 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
14806924 GCAGCCTTGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:14814387 original size:27 final size:26
Alignment explanation
Indices: 14814343--14814394 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
14814333 CTCGCTGCAA
*
14814343 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
14814370 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
14814395 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:14814535 original size:71 final size:70
Alignment explanation
Indices: 14814326--14814518 Score: 293
Period size: 71 Copynumber: 2.8 Consensus size: 70
14814316 GGAAGCGTTT
* *
14814326 TGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCAC---ATATATCTGTTCTGGTGACTTCGTCACA
1 TGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACTATATATATATGTTCTGGTGACTTCGTCACA
14814388 ATATC
66 ATATC
* *
14814393 TGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACTTATATATATATGTTTTGGTGACTTCGTCAT
1 TGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCAC-TATATATATATGTTCTGGTGACTTCGTCAC
14814458 AATATC
65 AATATC
* *
14814464 TGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATATATTTATTCTGGTG
1 TGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCAC-TATATATATATGTTCTGGTG
14814519 GCCTAGCCAC
Statistics
Matches: 114, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
67 33 0.29
71 81 0.71
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (70 bp):
TGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACTATATATATATGTTCTGGTGACTTCGTCACA
ATATC
Found at i:14815929 original size:41 final size:43
Alignment explanation
Indices: 14815852--14816009 Score: 189
Period size: 44 Copynumber: 3.7 Consensus size: 43
14815842 AGCTTGTACA
* * * *
14815852 ATGCCAACGTCCCAGACGTAGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
*
14815895 ATGCCATTGTCCCAGA-G-GGTCTTACACGAAATCAAATAT-G
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
* *
14815935 ATGCCAATGTCCTAGACGTGGTCTTACACGTAAATCATAA-GTCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACG-AAATCA-AATATCG
* *
14815979 ATGCCAACGTCCCAGATGTGGTCTTACACGA
1 ATGCCAATGTCCCAGACGTGGTCTTACACGA
14816010 TAACACATAT
Statistics
Matches: 99, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
40 15 0.15
41 20 0.20
42 12 0.12
43 22 0.22
44 30 0.30
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
Found at i:14824265 original size:33 final size:32
Alignment explanation
Indices: 14824235--14824308 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 32
14824225 ATGGTACAAC
14824235 ATGAAAAGGTTAT-GTACACTTTGTGTGTACAT
1 ATGAAAAGGTT-TGGTACACTTTGTGTGTACAT
* * * *
14824267 TTGGAAAGGTTTGGTATACTTTGTGTATACCAT
1 ATGAAAAGGTTTGGTACACTTTGTGTGTA-CAT
14824300 ATGAAAAGG
1 ATGAAAAGG
14824309 AAAGGTTTAC
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
31 1 0.03
32 23 0.68
33 10 0.29
ACGTcount: A:0.31, C:0.08, G:0.24, T:0.36
Consensus pattern (32 bp):
ATGAAAAGGTTTGGTACACTTTGTGTGTACAT
Found at i:14828143 original size:23 final size:23
Alignment explanation
Indices: 14828117--14828169 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
14828107 CTGCCTTTTG
*
14828117 ATGGATTCGGTGTGATATTGGGA
1 ATGGATTCGATGTGATATTGGGA
*
14828140 ATGGATTCGATTTGATATTGGGA
1 ATGGATTCGATGTGATATTGGGA
14828163 ATGGATT
1 ATGGATT
14828170 GGTTAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.25, C:0.04, G:0.34, T:0.38
Consensus pattern (23 bp):
ATGGATTCGATGTGATATTGGGA
Found at i:14830140 original size:101 final size:101
Alignment explanation
Indices: 14829965--14830374 Score: 802
Period size: 101 Copynumber: 4.1 Consensus size: 101
14829955 TAACTGGTAC
*
14829965 AAAAGATTTTGTATGAAGCTCATAACAGTGCAATGTCAGTTCATCCAGGTAGTAATAAAATGTAT
1 AAAAGATTTTGTATGAAGCTCATAACGGTGCAATGTCAGTTCATCCAGGTAGTAATAAAATGTAT
14830030 AATGATTTGAAAAAGATGTATTGGTGGCTGGGAATG
66 AATGATTTGAAAAAGATGTATTGGTGGCTGGGAATG
14830066 AAAAGATTTTGTATGAAGCTCATAACGGTGCAATGTCAGTTCATCCAGGTAGTAATAAAATGTAT
1 AAAAGATTTTGTATGAAGCTCATAACGGTGCAATGTCAGTTCATCCAGGTAGTAATAAAATGTAT
14830131 AATGATTTGAAAAAGATGTATTGGTGGCTGGGAATG
66 AATGATTTGAAAAAGATGTATTGGTGGCTGGGAATG
14830167 AAAAGATTTTGTATGAAGCTCATAACGGTGCAATGTCAGTTCATCCAGGTAGTAATAAAATGTAT
1 AAAAGATTTTGTATGAAGCTCATAACGGTGCAATGTCAGTTCATCCAGGTAGTAATAAAATGTAT
14830232 AATGATTTGAAAAAGATGTATTGGTGGCTGGGAATG
66 AATGATTTGAAAAAGATGTATTGGTGGCTGGGAATG
14830268 AAAAGATTTTGTATGAAGCTCATAACGGTGCAATGTCAGTTCATCCAGGTAGTAATAAAATGTAT
1 AAAAGATTTTGTATGAAGCTCATAACGGTGCAATGTCAGTTCATCCAGGTAGTAATAAAATGTAT
*
14830333 AATGATTTGAAAAAGATGTATTGGTGGCCGGGAATG
66 AATGATTTGAAAAAGATGTATTGGTGGCTGGGAATG
14830369 AAAAGA
1 AAAAGA
14830375 GATATTTTTG
Statistics
Matches: 307, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 307 1.00
ACGTcount: A:0.37, C:0.09, G:0.24, T:0.30
Consensus pattern (101 bp):
AAAAGATTTTGTATGAAGCTCATAACGGTGCAATGTCAGTTCATCCAGGTAGTAATAAAATGTAT
AATGATTTGAAAAAGATGTATTGGTGGCTGGGAATG
Found at i:14831962 original size:40 final size:40
Alignment explanation
Indices: 14831884--14832107 Score: 283
Period size: 40 Copynumber: 5.5 Consensus size: 40
14831874 ACCCAAGTAT
* * *
14831884 CTTCGGGATTTAG-CCGGATATAG-CAACTCGTACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * **
14831923 CTTCGGGTCTTAGCTCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
14831963 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
14832003 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* * *
14832046 CTTCGGGACTTAGCCCGGACATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
14832086 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
14832108 CATCCGAATA
Statistics
Matches: 161, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 12 0.07
40 113 0.70
41 1 0.01
43 35 0.22
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:14832070 original size:83 final size:80
Alignment explanation
Indices: 14831884--14832107 Score: 283
Period size: 83 Copynumber: 2.8 Consensus size: 80
14831874 ACCCAAGTAT
* * * * *
14831884 CTTCGGGATTTAG-CCGGATATAG-CAACTCGTACAAATGCCTTCGGGTCTTAGCTCGGATATAG
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
**
14831947 TCACTAGCATGAATGC
65 TCACTAGCACAAATGC
*
14831963 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
14832027 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
* * *
14832046 CTTCGGGACTTAGCCCGGACATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
14832108 CATCCGAATA
Statistics
Matches: 127, Mismatches: 12, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
79 13 0.10
80 47 0.37
81 1 0.01
83 66 0.52
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:14838250 original size:104 final size:104
Alignment explanation
Indices: 14838070--14838322 Score: 506
Period size: 104 Copynumber: 2.4 Consensus size: 104
14838060 TGTTACATAG
14838070 AAAATTCAAAATGTGAGGTCCTTATATGGCAATTAGGCCATTGATGAAAAACATGTAGATATTTT
1 AAAATTCAAAATGTGAGGTCCTTATATGGCAATTAGGCCATTGATGAAAAACATGTAGATATTTT
14838135 TAGTGACGCATCCATGGAAAATTGAAAAGATGCAAGGAC
66 TAGTGACGCATCCATGGAAAATTGAAAAGATGCAAGGAC
14838174 AAAATTCAAAATGTGAGGTCCTTATATGGCAATTAGGCCATTGATGAAAAACATGTAGATATTTT
1 AAAATTCAAAATGTGAGGTCCTTATATGGCAATTAGGCCATTGATGAAAAACATGTAGATATTTT
14838239 TAGTGACGCATCCATGGAAAATTGAAAAGATGCAAGGAC
66 TAGTGACGCATCCATGGAAAATTGAAAAGATGCAAGGAC
14838278 AAAATTCAAAATGTGAGGTCCTTATATGGCAATTAGGCCATTGAT
1 AAAATTCAAAATGTGAGGTCCTTATATGGCAATTAGGCCATTGAT
14838323 AGAATAAAAC
Statistics
Matches: 149, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
104 149 1.00
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.28
Consensus pattern (104 bp):
AAAATTCAAAATGTGAGGTCCTTATATGGCAATTAGGCCATTGATGAAAAACATGTAGATATTTT
TAGTGACGCATCCATGGAAAATTGAAAAGATGCAAGGAC
Found at i:14839960 original size:13 final size:13
Alignment explanation
Indices: 14839910--14839972 Score: 63
Period size: 13 Copynumber: 4.5 Consensus size: 13
14839900 AGAATTGCCT
14839910 ACGGGCTGGCCAC
1 ACGGGCTGGCCAC
*
14839923 ACGGCCATGGGAGCCAC
1 ACGGGC-T--G-GCCAC
*
14839940 ACGGGCTGGCTAC
1 ACGGGCTGGCCAC
*
14839953 ATGGGCTGGCCAC
1 ACGGGCTGGCCAC
14839966 ACGGGCT
1 ACGGGCT
14839973 TGTGCCCCTA
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
13 26 0.65
14 2 0.05
16 2 0.05
17 10 0.25
ACGTcount: A:0.17, C:0.33, G:0.38, T:0.11
Consensus pattern (13 bp):
ACGGGCTGGCCAC
Found at i:14846616 original size:30 final size:30
Alignment explanation
Indices: 14846582--14846642 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
14846572 TCCTTAACTC
14846582 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
14846612 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
14846642 A
1 A
14846643 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:14860921 original size:42 final size:42
Alignment explanation
Indices: 14860820--14860977 Score: 183
Period size: 43 Copynumber: 3.7 Consensus size: 42
14860810 ATCTCGTACA
** * *
14860820 ATGCCAAAATCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATAT-G
*
14860863 ATGCCACTGTCCCAGACAG-GGTCTTACACGAAATCAAATATG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGAAATCAAATATG
* *
14860905 ATGCCAATGTCCCAGACGTGGTATTACACGTAAATCATAATTTG
1 ATGCCAATGTCCCAGACGTGGTCTTACACG-AAATCA-AATATG
* * *
14860949 ATGCCAACGTCCCCGACGTAGTCTTACAC
1 ATGCCAATGTCCCAGACGTGGTCTTACAC
14860978 AATAACACAT
Statistics
Matches: 99, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
41 1 0.01
42 27 0.27
43 40 0.40
44 31 0.31
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATG
Found at i:14881776 original size:44 final size:43
Alignment explanation
Indices: 14881631--14881791 Score: 168
Period size: 43 Copynumber: 3.7 Consensus size: 43
14881621 AAATCTCGTA
* *
14881631 CAATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCAAATATT
1 CAATGCCAATGTCCCAGACGTGGTCTTACACGTAAATC-AAT-TT
* * * * * *
14881675 -GATACCACTGTCCCAGACAG-GGTCTTACAC-AAAATCAAATA
1 CAATGCCAATGTCCCAGAC-GTGGTCTTACACGTAAATCAATTT
*
14881716 CGATGCCAATGTCCCAGACGTGGTCTTACACGTAAATCATATTT
1 CAATGCCAATGTCCCAGACGTGGTCTTACACGTAAATCA-ATTT
*
14881760 CAATGCCAATGTCCCAGACGTGGTTTTACACG
1 CAATGCCAATGTCCCAGACGTGGTCTTACACG
14881792 ATAACACATA
Statistics
Matches: 96, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
41 2 0.02
42 28 0.29
43 33 0.34
44 33 0.34
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACGTGGTCTTACACGTAAATCAATTT
Found at i:14884740 original size:24 final size:24
Alignment explanation
Indices: 14884708--14884865 Score: 113
Period size: 24 Copynumber: 6.5 Consensus size: 24
14884698 TCGATTTCGG
14884708 ACACATAGTGCTATTCAAATCCGC
1 ACACATAGTGCTATTCAAATCCGC
* * ** * *
14884732 ACACTTAGTGCCACGCTAACCCGC
1 ACACATAGTGCTATTCAAATCCGC
** *
14884756 ACACATAGTGCCT-TAGAAATCCAC
1 ACACATAGTG-CTATTCAAATCCGC
* * * *
14884780 ACGCTCGTATTGAC-ATTCAAATCAGC
1 A--CACATAGTG-CTATTCAAATCCGC
*
14884806 ACACATAGTGCTATTCAATTCCGC
1 ACACATAGTGCTATTCAAATCCGC
*
14884830 ACACATAGTGCCATTCAAAATCCGC
1 ACACATAGTGCTATTC-AAATCCGC
*
14884855 ACACTTAGTGC
1 ACACATAGTGC
14884866 CAATGTCATT
Statistics
Matches: 98, Mismatches: 30, Indels: 11
0.71 0.22 0.08
Matches are distributed among these distances:
23 1 0.01
24 64 0.65
25 18 0.18
26 15 0.15
ACGTcount: A:0.32, C:0.31, G:0.14, T:0.23
Consensus pattern (24 bp):
ACACATAGTGCTATTCAAATCCGC
Found at i:14892100 original size:24 final size:24
Alignment explanation
Indices: 14892050--14892112 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
14892040 CAATCAATTT
* * *
14892050 CGCACACATAGTGCTATTCAAATC
1 CGCACACATAGTGCCATGCAAACC
* *
14892074 CGCACACTTAGTGCCATGCTAACC
1 CGCACACATAGTGCCATGCAAACC
14892098 CGCACACATAGTGCC
1 CGCACACATAGTGCC
14892113 TTAGAAATCC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.29, C:0.35, G:0.16, T:0.21
Consensus pattern (24 bp):
CGCACACATAGTGCCATGCAAACC
Found at i:14892166 original size:24 final size:25
Alignment explanation
Indices: 14892138--14892212 Score: 73
Period size: 24 Copynumber: 3.1 Consensus size: 25
14892128 CTCGTATTGA
14892138 CATTCAAATT-AGCACAAATAGTGC
1 CATTCAAATTCAGCACAAATAGTGC
* * *
14892162 TATTC-AATTCCGCACACATAGTGC
1 CATTCAAATTCAGCACAAATAGTGC
* * **
14892186 CATTCAAAATCCGCACACTTAGTGC
1 CATTCAAATTCAGCACAAATAGTGC
14892211 CA
1 CA
14892213 ATGTCATTTC
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
23 4 0.09
24 20 0.47
25 19 0.44
ACGTcount: A:0.35, C:0.28, G:0.12, T:0.25
Consensus pattern (25 bp):
CATTCAAATTCAGCACAAATAGTGC
Found at i:14911439 original size:52 final size:52
Alignment explanation
Indices: 14911324--14911428 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 52
14911314 TGTCTTATTA
*
14911324 AAAATCATATGAACTTACAATTTCCCATAATATCCATAATCATAGAAATCAC
1 AAAATCATATGAACTTACAATTTCCCACAATATCCATAATCATAGAAATCAC
14911376 AAAATCATATGAACTTACAATTTCCCACAATATCCATAATCATAGAAATCAC
1 AAAATCATATGAACTTACAATTTCCCACAATATCCATAATCATAGAAATCAC
14911428 A
1 A
14911429 TTTATGTATG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.47, C:0.22, G:0.04, T:0.28
Consensus pattern (52 bp):
AAAATCATATGAACTTACAATTTCCCACAATATCCATAATCATAGAAATCAC
Found at i:14922351 original size:49 final size:49
Alignment explanation
Indices: 14922282--14922430 Score: 212
Period size: 49 Copynumber: 3.1 Consensus size: 49
14922272 GAAATGATAG
14922282 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
14922331 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * *
14922380 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
14922427 TAAG
1 TAAG
14922431 TCCCGAAGGG
Statistics
Matches: 89, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 8 0.09
48 1 0.01
49 80 0.90
ACGTcount: A:0.32, C:0.09, G:0.32, T:0.28
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:14922605 original size:37 final size:37
Alignment explanation
Indices: 14922549--14922627 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
14922539 CCGAGCTCTA
* * *
14922549 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
14922586 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
14922623 AAGAC
1 AAGAC
14922628 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:14924892 original size:46 final size:46
Alignment explanation
Indices: 14924833--14924931 Score: 112
Period size: 46 Copynumber: 2.2 Consensus size: 46
14924823 GATGAACAAG
* * * *
14924833 AAGCTTTATTGAGCTAAAAATGGTAAGCTCTATTGAGCT-AAACAGT
1 AAGCTTTATTGAGCT-AAAACGGTAAGCTCCAATAAGCTGAAACAGT
* *
14924879 AAGCTCTT-TTGAGCTGAACCGGTAAGCTCCAATAAGCTGAAACAGT
1 AAGCT-TTATTGAGCTAAAACGGTAAGCTCCAATAAGCTGAAACAGT
14924925 AAGCTTT
1 AAGCTTT
14924932 TACGAGCTGT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
45 19 0.42
46 24 0.53
47 2 0.04
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.28
Consensus pattern (46 bp):
AAGCTTTATTGAGCTAAAACGGTAAGCTCCAATAAGCTGAAACAGT
Found at i:14924907 original size:23 final size:22
Alignment explanation
Indices: 14924833--14924907 Score: 78
Period size: 22 Copynumber: 3.3 Consensus size: 22
14924823 GATGAACAAG
* *
14924833 AAGCTTTATTGAGCTAAAAATGGT
1 AAGCTCTATTGAGCT--AAACGGT
*
14924857 AAGCTCTATTGAGCTAAACAGT
1 AAGCTCTATTGAGCTAAACGGT
* *
14924879 AAGCTCTTTTGAGCTGAACCGGT
1 AAGCTCTATTGAGCT-AAACGGT
14924902 AAGCTC
1 AAGCTC
14924908 CAATAAGCTG
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
22 19 0.43
23 11 0.25
24 14 0.32
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.29
Consensus pattern (22 bp):
AAGCTCTATTGAGCTAAACGGT
Found at i:14924939 original size:46 final size:45
Alignment explanation
Indices: 14924854--14924940 Score: 113
Period size: 45 Copynumber: 1.9 Consensus size: 45
14924844 AGCTAAAAAT
* * * *
14924854 GGTAAGCTCTATTGAGCTAAACAGTAAGCTCTTTTGAGCTGAACC
1 GGTAAGCTCCAATAAGCTAAACAGTAAGCTCTTTCGAGCTGAACC
14924899 GGTAAGCTCCAATAAGCTGAAACAGTAAGCT-TTTACGAGCTG
1 GGTAAGCTCCAATAAGCT-AAACAGTAAGCTCTTT-CGAGCTG
14924941 TGGTGAGTCC
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
45 18 0.50
46 18 0.50
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (45 bp):
GGTAAGCTCCAATAAGCTAAACAGTAAGCTCTTTCGAGCTGAACC
Found at i:14930551 original size:16 final size:16
Alignment explanation
Indices: 14930532--14930591 Score: 75
Period size: 16 Copynumber: 3.7 Consensus size: 16
14930522 GAGTTTTCAT
*
14930532 AGTCTATAGTAGTCTC
1 AGTCTATAGTTGTCTC
* *
14930548 AGTCTATAGTTTTTCAC
1 AGTCTATAG-TTGTCTC
*
14930565 AATCTATAGTTGTCTC
1 AGTCTATAGTTGTCTC
14930581 AGTCTATAGTT
1 AGTCTATAGTT
14930592 TTTCATAGTT
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
16 24 0.67
17 12 0.33
ACGTcount: A:0.25, C:0.17, G:0.15, T:0.43
Consensus pattern (16 bp):
AGTCTATAGTTGTCTC
Found at i:14930572 original size:17 final size:17
Alignment explanation
Indices: 14930550--14930596 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 17
14930540 GTAGTCTCAG
14930550 TCTATAGTTTTTCACAA
1 TCTATAGTTTTTCACAA
* * *
14930567 TCTATAG-TTGTCTCAG
1 TCTATAGTTTTTCACAA
14930583 TCTATAGTTTTTCA
1 TCTATAGTTTTTCA
14930597 TAGTTTATAG
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
16 13 0.54
17 11 0.46
ACGTcount: A:0.23, C:0.17, G:0.11, T:0.49
Consensus pattern (17 bp):
TCTATAGTTTTTCACAA
Found at i:14930606 original size:33 final size:33
Alignment explanation
Indices: 14930525--14930608 Score: 132
Period size: 33 Copynumber: 2.5 Consensus size: 33
14930515 CTATCTAGAG
*
14930525 TTTTCATAGTCTATAGTAGTCTCAGTCTATAGT
1 TTTTCATAGTCTATAGTTGTCTCAGTCTATAGT
* *
14930558 TTTTCACAATCTATAGTTGTCTCAGTCTATAGT
1 TTTTCATAGTCTATAGTTGTCTCAGTCTATAGT
*
14930591 TTTTCATAGTTTATAGTT
1 TTTTCATAGTCTATAGTT
14930609 TAAATCTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.24, C:0.14, G:0.13, T:0.49
Consensus pattern (33 bp):
TTTTCATAGTCTATAGTTGTCTCAGTCTATAGT
Found at i:14938674 original size:42 final size:42
Alignment explanation
Indices: 14938574--14938679 Score: 110
Period size: 42 Copynumber: 2.5 Consensus size: 42
14938564 CAATGCCGAC
* * *
14938574 GTCCCAGACGTGATCTTACATGCAATCAAATATCGATGCCACT
1 GTCCCAAACGTGGTCTTACAT-CAATCAAATATCGATGCCAAT
* *
14938617 GTCCTAGAAAG-GGTCTTACA-CTAATTCAAATA-CGATGCCAAT
1 GTCCCA-AACGTGGTCTTACATC-AA-TCAAATATCGATGCCAAT
14938659 GTCCCAAACGTGGTCTTACAT
1 GTCCCAAACGTGGTCTTACAT
14938680 ATAAATCATA
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
41 4 0.08
42 25 0.49
43 20 0.39
44 2 0.04
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (42 bp):
GTCCCAAACGTGGTCTTACATCAATCAAATATCGATGCCAAT
Found at i:14941704 original size:46 final size:46
Alignment explanation
Indices: 14941651--14941826 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
14941641 TATTTGGGCA
14941651 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * * *
14941697 TCCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* * *
14941744 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
14941790 CCCGAGCTCGTTGAGTTGATTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14941827 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 66 0.61
47 30 0.28
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:14944788 original size:15 final size:15
Alignment explanation
Indices: 14944749--14944828 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
14944739 GTATCTTGGG
*
14944749 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
14944764 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
14944779 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
14944794 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
14944809 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
14944823 TTTCTT
1 TTTCTT
14944829 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:14944818 original size:30 final size:30
Alignment explanation
Indices: 14944740--14944827 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
14944730 CATAGTATCG
* * *
14944740 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
14944770 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
14944800 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
14944828 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:14947269 original size:46 final size:46
Alignment explanation
Indices: 14947216--14947389 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 46
14947206 TATTTGGGCA
14947216 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAGCG
* * * *
14947262 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CGT-GAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATG---CGA-GCG
* * * *
14947309 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAGCG
* * * * *
14947355 CCCGAGCTCGTTGAGTTGAGTTCGATTTCGCTTAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
14947390 GGGCGGGTTA
Statistics
Matches: 104, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
46 61 0.59
47 30 0.29
49 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAGCG
Found at i:14947371 original size:93 final size:93
Alignment explanation
Indices: 14947212--14947384 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
14947202 GGGATATTTG
* *
14947212 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAG
14947277 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * *
14947305 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAG
* *
14947370 TTGAGTTCGATTTCG
66 TTGAGTCCGAGTTCG
14947385 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:14950481 original size:27 final size:26
Alignment explanation
Indices: 14950441--14950552 Score: 118
Period size: 27 Copynumber: 4.2 Consensus size: 26
14950431 AGGAAGTGTC
*
14950441 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
14950468 CTGGTGGCTCTGCCACATATATCT-ATT
1 CTGGTGGCTCTGCCACAT-TATCTGA-T
*
14950495 CTGGTGGCACTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * * *
14950523 TTGGTGACTCTGTCACATTATCTGCT
1 CTGGTGGCTCTGCCACATTATCTGAT
14950549 CTGG
1 CTGG
14950553 CAGCCTTGCT
Statistics
Matches: 72, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
26 7 0.10
27 49 0.68
28 15 0.21
29 1 0.01
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:14950545 original size:54 final size:54
Alignment explanation
Indices: 14950441--14950545 Score: 142
Period size: 54 Copynumber: 1.9 Consensus size: 54
14950431 AGGAAGTGTC
*
14950441 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
* * *
14950495 CTGGTGGC-ACTGCCACGATTATCTGTATTTGGTGACTCTGTCACAT-TATCT
1 CTGGTGGCTA-TGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCT
14950546 GCTCTGGCAG
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
53 1 0.02
54 27 0.60
55 17 0.38
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
Found at i:14951946 original size:45 final size:45
Alignment explanation
Indices: 14951882--14951974 Score: 168
Period size: 45 Copynumber: 2.1 Consensus size: 45
14951872 ATACGATATG
*
14951882 AGTACAAGAGTCGCTAGTGGAAGAAGCCGTGGACGGGGCCGAGGA
1 AGTACAAGAGTCGCTAGTGGAAGAAGCCGTGGACGAGGCCGAGGA
*
14951927 AGTACAAGAGTCGCTAGTGGAAGAGGCCGTGGACGAGGCCGAGGA
1 AGTACAAGAGTCGCTAGTGGAAGAAGCCGTGGACGAGGCCGAGGA
14951972 AGT
1 AGT
14951975 GCTCGAGCGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.29, C:0.17, G:0.42, T:0.12
Consensus pattern (45 bp):
AGTACAAGAGTCGCTAGTGGAAGAAGCCGTGGACGAGGCCGAGGA
Found at i:14957229 original size:16 final size:16
Alignment explanation
Indices: 14957208--14957240 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
14957198 AACTAAATTC
14957208 TCTGCTCATCTCTTCT
1 TCTGCTCATCTCTTCT
*
14957224 TCTGCTCATCTGTTCT
1 TCTGCTCATCTCTTCT
14957240 T
1 T
14957241 TTTCTTTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.33, G:0.09, T:0.52
Consensus pattern (16 bp):
TCTGCTCATCTCTTCT
Found at i:14958510 original size:27 final size:27
Alignment explanation
Indices: 14958409--14958510 Score: 109
Period size: 27 Copynumber: 3.7 Consensus size: 27
14958399 AGCATCCTGA
* *
14958409 TGGCTATGCCACAATTATCT-AATCTGG
1 TGGCTCTGCCAC-ATTATCTGTATCTGG
*
14958436 TGGCTCTGCCACATATATCTAT-TCTGG
1 TGGCTCTGCCACAT-TATCTGTATCTGG
*
14958463 TGGCACTGCCACGATTATCTGTATCTGG
1 TGGCTCTGCCAC-ATTATCTGTATCTGG
* *
14958491 TGACTCTGTCACATTATCTG
1 TGGCTCTGCCACATTATCTG
14958511 CTCTGGCAGC
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
26 2 0.03
27 46 0.72
28 16 0.25
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
TGGCTCTGCCACATTATCTGTATCTGG
Found at i:14961159 original size:43 final size:42
Alignment explanation
Indices: 14961112--14961273 Score: 159
Period size: 43 Copynumber: 3.8 Consensus size: 42
14961102 AATGCCAACC
* *
14961112 TCCCAGACGTGGTCTTACATGCCATCACATATCGATGCCACTA
1 TCCCAGACGTGGTCTTACATG-AATCACATATCGATGCCACTG
* * *
14961155 TCCCAGATAG-GGTCTTACATGAATCAAATAT-GATGCCAATG
1 TCCCAGA-CGTGGTCTTACATGAATCACATATCGATGCCACTG
* * * *
14961196 TCCCAAACATGGTCTTACATGTAATCACATTTTGATGCCAAC-G
1 TCCCAGACGTGGTCTTACATG-AATCACATATCGATGCC-ACTG
* *
14961239 TCCTAGACGTGGTCTTACATGAGAACACATATCGA
1 TCCCAGACGTGGTCTTACATGA-ATCACATATCGA
14961274 AAATCCTATG
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
41 25 0.26
42 17 0.18
43 52 0.54
44 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (42 bp):
TCCCAGACGTGGTCTTACATGAATCACATATCGATGCCACTG
Found at i:14963663 original size:28 final size:28
Alignment explanation
Indices: 14963632--14963698 Score: 125
Period size: 28 Copynumber: 2.4 Consensus size: 28
14963622 CTTTATTAGA
14963632 GGCTTTGCCACGTAATTACTGCTCTGGT
1 GGCTTTGCCACGTAATTACTGCTCTGGT
*
14963660 GGCTTTGCCACGTAATTACTGCTTTGGT
1 GGCTTTGCCACGTAATTACTGCTCTGGT
14963688 GGCTTTGCCAC
1 GGCTTTGCCAC
14963699 ATTTACTGTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.13, C:0.25, G:0.25, T:0.36
Consensus pattern (28 bp):
GGCTTTGCCACGTAATTACTGCTCTGGT
Found at i:14964810 original size:25 final size:24
Alignment explanation
Indices: 14964782--14964830 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
14964772 CATACATTTT
*
14964782 ATTTATTTCACATTTTAGTCCCTAA
1 ATTTATTTCACAATTTAG-CCCTAA
* *
14964807 ATTTTTTTTACAATTTAGCCCTAA
1 ATTTATTTCACAATTTAGCCCTAA
14964831 TTACTCAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.29, C:0.18, G:0.04, T:0.49
Consensus pattern (24 bp):
ATTTATTTCACAATTTAGCCCTAA
Found at i:14967848 original size:48 final size:48
Alignment explanation
Indices: 14967796--14968032 Score: 348
Period size: 48 Copynumber: 4.9 Consensus size: 48
14967786 AATCCACATG
* * * * *
14967796 TCATCACCGATGCCATGTCCCAGACATGGTCATACACTGGCATACATA
1 TCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCACATATA
** * *
14967844 TCATCGCAAATGCCATGTCCCAAACATGGTCTTACACAGGCACATATG
1 TCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCACATATA
*
14967892 TCATCGCTGATGCCATGTCCCAGACATGGTCTTACACAGGCACATATA
1 TCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCACATATA
*
14967940 TCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAAGCACATATA
1 TCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCACATATA
* * *
14967988 TAATTGTCGATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
1 TCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
14968033 TTAGCATGGT
Statistics
Matches: 170, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 170 1.00
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.24
Consensus pattern (48 bp):
TCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCACATATA
Found at i:14967893 original size:96 final size:96
Alignment explanation
Indices: 14967756--14968031 Score: 356
Period size: 96 Copynumber: 2.9 Consensus size: 96
14967746 TTAAAGTACC
* ** * * * *
14967756 AATGCCATATCCCCGACATGGTCTTACATGAATC-CACATGTCATCACCGATGCCATGTCCCAGA
1 AATGCCATGTCCCAAACATGGTCTTACA-CAAGCACATATGTCATCGCCGATGCCATGTCCCAGA
* * *
14967820 CATGGTCATACACTGGCATACATATCATCGCA
65 CATGGTCTTACACAGGCACACATATCATCGCA
* *
14967852 AATGCCATGTCCCAAACATGGTCTTACACAGGCACATATGTCATCGCTGATGCCATGTCCCAGAC
1 AATGCCATGTCCCAAACATGGTCTTACACAAGCACATATGTCATCGCCGATGCCATGTCCCAGAC
* *
14967917 ATGGTCTTACACAGGCACATATATCATCGCC
66 ATGGTCTTACACAGGCACACATATCATCGCA
* * * * * *
14967948 GATGCCATGTCCCAGACATGGTCTTACACAAGCACATATATAATTGTCGATGCCATGTCCCAGAC
1 AATGCCATGTCCCAAACATGGTCTTACACAAGCACATATGTCATCGCCGATGCCATGTCCCAGAC
14968013 ATGGTCTTACACAGGCACA
66 ATGGTCTTACACAGGCACA
14968032 TTTAGCATGG
Statistics
Matches: 157, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
95 2 0.01
96 155 0.99
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (96 bp):
AATGCCATGTCCCAAACATGGTCTTACACAAGCACATATGTCATCGCCGATGCCATGTCCCAGAC
ATGGTCTTACACAGGCACACATATCATCGCA
Found at i:14974935 original size:14 final size:13
Alignment explanation
Indices: 14974917--14974948 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
14974907 AATATTTTAT
14974917 TTGTTCTTAATTA
1 TTGTTCTTAATTA
14974930 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
14974944 TTGTT
1 TTGTT
14974949 TTGATATTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:14985469 original size:48 final size:48
Alignment explanation
Indices: 14985315--14985462 Score: 224
Period size: 48 Copynumber: 3.1 Consensus size: 48
14985305 ATATATACAC
* **
14985315 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
** *
14985363 GGCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
* *
14985411 ATCTCATACATATTTTACATTAGTCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
14985459 ATCT
1 ATCT
14985463 TGTACATCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 89 1.00
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.38
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:14987739 original size:23 final size:23
Alignment explanation
Indices: 14987707--14987750 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
14987697 AAAATTTCAC
* *
14987707 ACATGTAATTTCACATATAATAG
1 ACATGAAATTTAACATATAATAG
*
14987730 ACATGAAATTTAACATTTAAT
1 ACATGAAATTTAACATATAAT
14987751 TATTTTTACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.36
Consensus pattern (23 bp):
ACATGAAATTTAACATATAATAG
Found at i:14997975 original size:40 final size:39
Alignment explanation
Indices: 14997927--14998035 Score: 103
Period size: 40 Copynumber: 2.7 Consensus size: 39
14997917 TTAAGCTCAT
* * *
14997927 ATGGGGAGCTTAGCTGATACACGGTTTACCACTAAGGTC
1 ATGGGGAGCTTAGCTAATACACAGCTTACCACTAAGGTC
* * *
14997966 ATGGAGGAGCTTTGCTAATACACAGCTTGCCACTAAGCTC
1 ATGG-GGAGCTTAGCTAATACACAGCTTACCACTAAGGTC
* *
14998006 TTATGGGGAGCTTCA-CTAATAGATAGCTTA
1 --ATGGGGAGCTT-AGCTAATACACAGCTTA
14998036 TAAAATCATT
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
39 4 0.07
40 29 0.52
41 19 0.34
42 4 0.07
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (39 bp):
ATGGGGAGCTTAGCTAATACACAGCTTACCACTAAGGTC
Found at i:14998463 original size:104 final size:104
Alignment explanation
Indices: 14998316--14998522 Score: 272
Period size: 104 Copynumber: 2.0 Consensus size: 104
14998306 TGAAGATTAC
* * * * * *
14998316 CGATCACTAGCACTTTTGAAAACTTAGTATAGCACTTATTTATAATGAAACTTGATCACTCACAC
1 CGATCACTAGCACATTTGAAAACTTAGTATAGAACATACTTATAACGAAACCTGATCACTCACAC
* *
14998381 TTTTGAAAACTTAGTATGGAGCATACTCATAAAGGAACT
66 TTTTGAAAACTTAGTATGGAACAAACTCATAAAGGAACT
* * * * *
14998420 CGATCACTTA-CACATTTGAAAACTTATTATGGAACATACTTATAACGGAGCCTGATCATTCACA
1 CGATCAC-TAGCACATTTGAAAACTTAGTATAGAACATACTTATAACGAAACCTGATCACTCACA
*
14998484 CTTTTGAAAACTTAGTATGGAACAAACTCATAATGGAAC
65 CTTTTGAAAACTTAGTATGGAACAAACTCATAAAGGAAC
14998523 CTTATCACTC
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
104 86 0.98
105 2 0.02
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.30
Consensus pattern (104 bp):
CGATCACTAGCACATTTGAAAACTTAGTATAGAACATACTTATAACGAAACCTGATCACTCACAC
TTTTGAAAACTTAGTATGGAACAAACTCATAAAGGAACT
Found at i:14998503 original size:52 final size:52
Alignment explanation
Indices: 14998317--14998534 Score: 242
Period size: 52 Copynumber: 4.2 Consensus size: 52
14998307 GAAGATTACC
* * * * * * *
14998317 GATCACT-AGCACTTTTGAAAACTTAGTATAGCACTTATTTATAATGAAACTT
1 GATCACTCA-CACTTTTGAAAACTTAGTATGGAACATACTCATAATGGAACCT
* *
14998369 GATCACTCACACTTTTGAAAACTTAGTATGGAGCATACTCATAAAGGAA-CT
1 GATCACTCACACTTTTGAAAACTTAGTATGGAACATACTCATAATGGAACCT
* * * * * *
14998420 CGATCACTTACACATTTGAAAACTTATTATGGAACATACTTATAACGGAGCCT
1 -GATCACTCACACTTTTGAAAACTTAGTATGGAACATACTCATAATGGAACCT
* *
14998473 GATCATTCACACTTTTGAAAACTTAGTATGGAACAAACTCATAATGGAACCT
1 GATCACTCACACTTTTGAAAACTTAGTATGGAACATACTCATAATGGAACCT
*
14998525 TATCACTCAC
1 GATCACTCAC
14998535 CAGAAAATAG
Statistics
Matches: 137, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
51 1 0.01
52 133 0.97
53 3 0.02
ACGTcount: A:0.37, C:0.20, G:0.13, T:0.31
Consensus pattern (52 bp):
GATCACTCACACTTTTGAAAACTTAGTATGGAACATACTCATAATGGAACCT
Found at i:15000938 original size:27 final size:27
Alignment explanation
Indices: 15000908--15001085 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
15000898 ATATTGAGTC
* * * *
15000908 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
15000935 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
15000962 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
15000990 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
15001017 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
15001044 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
15001071 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
15001086 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:15001047 original size:82 final size:81
Alignment explanation
Indices: 15000929--15001084 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
15000919 TGCTATATAA
* *
15000929 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
15000994 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
15001011 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
15001075 CACTTAGTGC
65 CACTTAGTGC
15001085 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:15009001 original size:27 final size:27
Alignment explanation
Indices: 15008971--15009148 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
15008961 ATATTGAGTC
* * * *
15008971 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
15008998 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
15009025 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
15009053 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
15009080 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
15009107 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
15009134 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
15009149 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:15009110 original size:82 final size:81
Alignment explanation
Indices: 15008992--15009147 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
15008982 TGCTATATAA
* *
15008992 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
15009057 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
15009074 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
15009138 CACTTAGTGC
65 CACTTAGTGC
15009148 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:15027569 original size:29 final size:29
Alignment explanation
Indices: 15027527--15027586 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
15027517 CATAAAGTCT
* *
15027527 TTGTAGTTGCTCTCTTTCAATGTAAAACC
1 TTGTAATTACTCTCTTTCAATGTAAAACC
*
15027556 TTGTAATTACTCTCTTTCAATGTAAAGCC
1 TTGTAATTACTCTCTTTCAATGTAAAACC
15027585 TT
1 TT
15027587 TCTCTGGATG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.25, C:0.20, G:0.12, T:0.43
Consensus pattern (29 bp):
TTGTAATTACTCTCTTTCAATGTAAAACC
Found at i:15028392 original size:17 final size:18
Alignment explanation
Indices: 15028365--15028398 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
15028355 AATTAAATAT
15028365 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
15028383 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
15028399 TAAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:15028478 original size:15 final size:15
Alignment explanation
Indices: 15028458--15028489 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
15028448 TGATAAAAAT
15028458 TAATAGATATAATTA
1 TAATAGATATAATTA
15028473 TAATAGATATAATTA
1 TAATAGATATAATTA
15028488 TA
1 TA
15028490 TATTAAACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (15 bp):
TAATAGATATAATTA
Found at i:15031795 original size:24 final size:24
Alignment explanation
Indices: 15031749--15031813 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 24
15031739 ATAGTAGGTT
* *** *
15031749 GGAGTGATTTATGGAGTGTATCAC
1 GGAGAGATTTATGGAGAAAATCAA
15031773 GGAGAGATATTA-GGAGAAAATCAA
1 GGAGAGAT-TTATGGAGAAAATCAA
*
15031797 GGAGTGATTTATGGAGA
1 GGAGAGATTTATGGAGA
15031814 GATTTAAGAA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
23 3 0.09
24 27 0.82
25 3 0.09
ACGTcount: A:0.35, C:0.05, G:0.34, T:0.26
Consensus pattern (24 bp):
GGAGAGATTTATGGAGAAAATCAA
Found at i:15033078 original size:27 final size:27
Alignment explanation
Indices: 15033048--15033225 Score: 175
Period size: 27 Copynumber: 6.6 Consensus size: 27
15033038 AACTGTTTAG
* *
15033048 ATTATCGAAATACCCTCGGTTTGTAAA
1 ATTACCGAAATACCCTCAGTTTGTAAA
* * *
15033075 ATTACCGACATACCCTCGGTTTGAAAA
1 ATTACCGAAATACCCTCAGTTTGTAAA
*
15033102 ATTACCGAAATACCCCCCAGTTTGTAAA
1 ATTACCGAAATA-CCCTCAGTTTGTAAA
15033130 ATTACC-AAGATACCC-CAGTTTGTAAA
1 ATTACCGAA-ATACCCTCAGTTTGTAAA
* * *
15033156 ATAACCGAAATACCCCCAATATT-TAAA
1 ATTACCGAAATACCCTCAGT-TTGTAAA
* * *
15033183 ATTGCCAAAATACCCT-TGTTAGTGTAAA
1 ATTACCGAAATACCCTCAGTT--TGTAAA
15033211 ATTACCGAAATACCC
1 ATTACCGAAATACCC
15033226 CTATAGGGTA
Statistics
Matches: 126, Mismatches: 17, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
25 1 0.01
26 23 0.18
27 62 0.49
28 40 0.32
ACGTcount: A:0.38, C:0.24, G:0.11, T:0.27
Consensus pattern (27 bp):
ATTACCGAAATACCCTCAGTTTGTAAA
Found at i:15033143 original size:55 final size:54
Alignment explanation
Indices: 15033048--15033226 Score: 193
Period size: 55 Copynumber: 3.3 Consensus size: 54
15033038 AACTGTTTAG
* * * * * * *
15033048 ATTATCGAAATACCCTCGGTTTGTAAAATTACCGACATACCCTCGGTTTGAAAA
1 ATTACCGAAATACCCCCAGTTTGTAAAATTACCAAAATACCCTCAGTTTGTAAA
*
15033102 ATTACCGAAATACCCCCCAGTTTGTAAAATTACCAAGATACCC-CAGTTTGTAAA
1 ATTACCGAAATA-CCCCCAGTTTGTAAAATTACCAAAATACCCTCAGTTTGTAAA
* * * *
15033156 ATAACCGAAATACCCCCAATATT-TAAAATTGCCAAAATACCCT-TGTTAGTGTAAA
1 ATTACCGAAATACCCCCAGT-TTGTAAAATTACCAAAATACCCTCAGTT--TGTAAA
15033211 ATTACCGAAATACCCC
1 ATTACCGAAATACCCC
15033227 TATAGGGTAA
Statistics
Matches: 107, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
53 27 0.25
54 33 0.31
55 47 0.44
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.27
Consensus pattern (54 bp):
ATTACCGAAATACCCCCAGTTTGTAAAATTACCAAAATACCCTCAGTTTGTAAA
Found at i:15033687 original size:27 final size:26
Alignment explanation
Indices: 15033657--15033746 Score: 83
Period size: 27 Copynumber: 3.4 Consensus size: 26
15033647 GTGCAAATCG
*
15033657 TATTTACCAGTGGCTATGTGCCTATCA
1 TATTTACCA-TGGCTATGTGCCGATCA
** * * *
15033684 TATTTATTAATGACTCTGTGTCGATCA
1 TATTTA-CCATGGCTATGTGCCGATCA
*
15033711 TATTTACCCATGGCTATGTGCCGATTA
1 TATTTA-CCATGGCTATGTGCCGATCA
15033738 TA-TTACCAT
1 TATTTACCAT
15033747 CACTGATGGC
Statistics
Matches: 49, Mismatches: 13, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
25 4 0.08
26 3 0.06
27 41 0.84
28 1 0.02
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (26 bp):
TATTTACCATGGCTATGTGCCGATCA
Found at i:15033787 original size:32 final size:32
Alignment explanation
Indices: 15033715--15033803 Score: 94
Period size: 32 Copynumber: 2.8 Consensus size: 32
15033705 CGATCATATT
* *
15033715 TACCCATGGCTATGTGCCG-ATTATATTACCA
1 TACCGATGGCTATGTGCCGAATTATATTAACA
* *
15033746 TCACTGATGGCTATGTGCCGAATT-TATTAGAGA
1 T-ACCGATGGCTATGTGCCGAATTATATTA-ACA
*
15033779 TACCGATGGCTTTGTGCC-AATTATA
1 TACCGATGGCTATGTGCCGAATTATA
15033804 ATACCGTTAC
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
31 5 0.10
32 38 0.79
33 5 0.10
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (32 bp):
TACCGATGGCTATGTGCCGAATTATATTAACA
Found at i:15047279 original size:27 final size:26
Alignment explanation
Indices: 15047239--15047333 Score: 100
Period size: 27 Copynumber: 3.5 Consensus size: 26
15047229 AGCATGGCTG
* * *
15047239 CCAGAACAGTTATTGTGATAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
* *
15047265 CTAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* *
15047292 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
15047319 CCAGAAACAGATATT
1 CCAG-AACAGATATT
15047334 TGCACCTTAG
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
26 11 0.19
27 40 0.68
28 8 0.14
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:15047344 original size:28 final size:28
Alignment explanation
Indices: 15047287--15047352 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
15047277 ATTGTGGCAG
***
15047287 AGCCACCAG-AACAGATATTTGTGGCAT
1 AGCCACCAGAAACAGATATTTGCACCAT
*
15047314 AGCCACCAGAAACAGATATTTGCACCTT
1 AGCCACCAGAAACAGATATTTGCACCAT
15047342 AGCCACCAGAA
1 AGCCACCAGAA
15047353 CGCTTCCTCC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 9 0.26
28 25 0.74
ACGTcount: A:0.36, C:0.27, G:0.18, T:0.18
Consensus pattern (28 bp):
AGCCACCAGAAACAGATATTTGCACCAT
Found at i:15060250 original size:55 final size:55
Alignment explanation
Indices: 15060150--15060323 Score: 142
Period size: 55 Copynumber: 3.2 Consensus size: 55
15060140 TTAAGGATAC
* * *
15060150 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAAT
1 CATGTAAGACCATGCCAAGACATGGCAATTGGTAAGCTTTATAAGGCAAGGAAAT
* * ***
15060205 CATGTAAGACTATGTCAAGACATGGC-ATTGGTAA-CTTACTATAAGGCAAAGG-TCC
1 CATGTAAGACCATGCCAAGACATGGCAATTGGTAAGCTT--TATAAGGC-AAGGAAAT
* * * * * * *
15060260 CATGTAAGACCATGCCAAGGCATGG-TATTGGTGAG-TTCAGAAGGCAAGGATAC
1 CATGTAAGACCATGCCAAGACATGGCAATTGGTAAGCTTTATAAGGCAAGGAAAT
15060313 CATGTCAAGAC
1 CATGT-AAGAC
15060324 ATGGCAATGG
Statistics
Matches: 97, Mismatches: 15, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
52 4 0.04
53 15 0.15
54 13 0.13
55 61 0.63
56 4 0.04
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (55 bp):
CATGTAAGACCATGCCAAGACATGGCAATTGGTAAGCTTTATAAGGCAAGGAAAT
Found at i:15069405 original size:39 final size:41
Alignment explanation
Indices: 15069310--15069493 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 41
15069300 TTGAATGATG
*
15069310 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
*
15069349 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATA
15069389 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* *
15069428 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* *
15069468 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
15069494 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 9, Indels: 19
0.82 0.06 0.12
Matches are distributed among these distances:
39 54 0.43
40 61 0.48
41 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:15069445 original size:79 final size:81
Alignment explanation
Indices: 15069310--15069493 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
15069300 TTGAATGATG
15069310 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
15069373 TGTGCGAGA-TACTA-A
66 TGTGCGA-ATTACTATA
* * **
15069388 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
15069449 ATTTGTGCGAATTACTATA
63 ATTTGTGCGAATTACTATA
* *
15069468 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
15069494 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 11 0.12
79 58 0.63
80 23 0.25
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
TGTGCGAATTACTATA
Found at i:15069515 original size:79 final size:79
Alignment explanation
Indices: 15069362--15069526 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
15069352 GGACTAAGAT
* ** *
15069362 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
15069427 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
15069441 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
15069503 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
15069520 CCGAAGG
1 CCGAAGG
15069527 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.04
79 46 0.62
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:15070969 original size:55 final size:52
Alignment explanation
Indices: 15070869--15071058 Score: 177
Period size: 55 Copynumber: 3.5 Consensus size: 52
15070859 TTAAGGATAC
* * * * *
15070869 CATGTAAGACCATGCCAAGACATGGAAATCGGTGACGTTTC-TAAGGCAAGGAAAT
1 CATGTAAGACCATGTCAAGACATGG-CATTGAT-AAG-TTCATAAGGCAAGG-AAT
* *
15070924 CATGTAAGACTATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGG-TT
1 CATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-C-ATAAGGC-AAGGAAT
* * * * *
15070978 CTATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATAC
1 C-ATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGCAAGGA-AT
15071032 CATGTAAGACCATGTCAAGACATGGCA
1 CATGTAAGACCATGTCAAGACATGGCA
15071059 ATGGTAAGGT
Statistics
Matches: 112, Mismatches: 16, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
52 6 0.05
53 34 0.30
54 8 0.07
55 60 0.54
56 4 0.04
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (52 bp):
CATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGCAAGGAAT
Found at i:15071284 original size:16 final size:16
Alignment explanation
Indices: 15071263--15071293 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15071253 ATAAATTTGA
15071263 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
15071279 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
15071294 AGTGGAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:15074900 original size:27 final size:27
Alignment explanation
Indices: 15074869--15075046 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
15074859 TAAATTGTAC
*
15074869 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
15074896 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
15074922 ATGCACTAAGTGTGCGGATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
15074950 GGCACTAAGTGTGCGAGATGGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * * *
15074978 GGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
15075005 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
15075032 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
15075047 GGCTCAATAA
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
27 101 0.81
28 24 0.19
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:15074983 original size:82 final size:81
Alignment explanation
Indices: 15074870--15075019 Score: 212
Period size: 82 Copynumber: 1.8 Consensus size: 81
15074860 AAATTGTACA
* * * *
15074870 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
15074934 TGCGGATTGACCATGCG
65 TGCGGATTGACCATGCG
** *
15074951 GCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-ATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
15075016 TGCG
65 TGCG
15075020 AGTTGATTAT
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
81 15 0.25
82 44 0.73
83 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGGATTGACCATGCG
Found at i:15075037 original size:82 final size:81
Alignment explanation
Indices: 15074866--15075046 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
15074856 GATTAAATTG
* * * *
15074866 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
15074931 GTGTGCGGATTGACCA
66 GTGTGCGGATTGACCA
* * ** *
15074947 TGCGGCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-ATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-GCACT
**
15075011 AAGTGTGC-GAGTTGATTA
64 AAGTGTGCGGA-TTGACCA
* *
15075029 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
15075047 GGCTCAATAA
Statistics
Matches: 82, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
81 20 0.24
82 62 0.76
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGGATTGACCA
Found at i:15078608 original size:14 final size:14
Alignment explanation
Indices: 15078589--15078616 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
15078579 TCGAATGTTA
15078589 TAGAAATAGGCATG
1 TAGAAATAGGCATG
15078603 TAGAAATAGGCATG
1 TAGAAATAGGCATG
15078617 CTATGCAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.29, T:0.21
Consensus pattern (14 bp):
TAGAAATAGGCATG
Found at i:15093263 original size:37 final size:37
Alignment explanation
Indices: 15093213--15093289 Score: 118
Period size: 37 Copynumber: 2.1 Consensus size: 37
15093203 TTATTACGAA
* * *
15093213 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
15093250 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
15093287 GTC
1 GTC
15093290 CTTAGAACTC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.22
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:15093497 original size:47 final size:47
Alignment explanation
Indices: 15093410--15093895 Score: 654
Period size: 47 Copynumber: 10.6 Consensus size: 47
15093400 CCCTTCGGGA
* * * * * *
15093410 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
15093457 CCTGTCGCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15093504 CTTATCACATATATACACTTTCACATTCATCACACCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15093551 CTTAACACATATATACACTTTCACATTCATCACACCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15093598 CTTAACACATATATACACTTTCACATTCATCACACCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15093645 CTTAACACATATATACACTTTCACATTCATCACACCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15093692 CTTA--AC------AC-CTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
15093730 CTTATCACGCATATACACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15093777 CTTATCACATATAT---CTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
15093821 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15093868 CTTATCACATATATATACACTTTCACAT
1 CTTATCAC--ATATATACACTTTCACAT
15093896 ATGGGTTTAA
Statistics
Matches: 397, Mismatches: 28, Indels: 26
0.88 0.06 0.06
Matches are distributed among these distances:
38 32 0.08
39 2 0.01
40 2 0.01
44 40 0.10
45 2 0.01
46 2 0.01
47 301 0.76
49 16 0.04
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:15097252 original size:39 final size:39
Alignment explanation
Indices: 15097180--15097299 Score: 150
Period size: 39 Copynumber: 3.1 Consensus size: 39
15097170 GGACTTTAGC
* * * * * *
15097180 CCGGACATATTTCCAGCACGTAGACTACAGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
* **
15097219 CCGGTTATAATTCCAGCACATAGCCTGCGGACCTTTTGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
*
15097258 CCGGATATAATTCCAGCACATAGCCTGCGGACCGTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
15097297 CCG
1 CCG
15097300 AATAAACATC
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 68 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
Found at i:15104913 original size:39 final size:39
Alignment explanation
Indices: 15104756--15104918 Score: 202
Period size: 39 Copynumber: 4.2 Consensus size: 39
15104746 GGACTTTAGC
* * * * * *
15104756 CCGGACATATTTCCAGTACGTAGCCTACGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
** * *
15104795 -CTAATTATAATTCCAGCATATAGCCTGCGGACCTTAAGT
1 CCGGA-TATAATTCCAGCACATAGCCTGCGGACCCTAAGT
* *
15104834 CTGGATATAATTCTAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
15104873 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
15104912 CCGGATA
1 CCGGATA
15104919 AACATCACTG
Statistics
Matches: 106, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
38 2 0.02
39 103 0.97
40 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:15105183 original size:39 final size:39
Alignment explanation
Indices: 15105140--15105236 Score: 140
Period size: 39 Copynumber: 2.5 Consensus size: 39
15105130 ATGTAGCCTA
* *
15105140 CGGACCTTAAGTCCAGTTATAATTCCAGCACATAGACTG
1 CGGACCTTAAGTCCAGATATAATTCCAACACATAGACTG
* *
15105179 CGGACCTTAAGTCCGGATATAATTCCAACACATAGCCTG
1 CGGACCTTAAGTCCAGATATAATTCCAACACATAGACTG
* *
15105218 CGGACCCTAAGTCCGGATA
1 CGGACCTTAAGTCCAGATA
15105237 AACATCACTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 53 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (39 bp):
CGGACCTTAAGTCCAGATATAATTCCAACACATAGACTG
Found at i:15110321 original size:16 final size:16
Alignment explanation
Indices: 15110297--15110327 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15110287 CTTCTTCACT
15110297 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
15110313 TACTTACTTACTTAA
1 TACTCACTTACTTAA
15110328 TCAAACTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:15110444 original size:23 final size:24
Alignment explanation
Indices: 15110406--15110450 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
15110396 TTTGCTCTTC
*
15110406 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
15110430 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
15110451 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:15110650 original size:53 final size:54
Alignment explanation
Indices: 15110519--15110769 Score: 239
Period size: 55 Copynumber: 4.7 Consensus size: 54
15110509 ACACAGGTAC
* * * *
15110519 CTTACCATTGCCATGACTTGCCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
15110568 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATGCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * * *
15110621 CTCACCAATGCCATGCCTTGGCATCGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * * *
15110676 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTTCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
15110729 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTAT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTAT
15110770 ATTTAAACCC
Statistics
Matches: 164, Mismatches: 27, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
49 37 0.23
50 1 0.01
52 1 0.01
53 48 0.29
54 10 0.06
55 65 0.40
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:15110710 original size:108 final size:110
Alignment explanation
Indices: 15110566--15110766 Score: 291
Period size: 108 Copynumber: 1.8 Consensus size: 110
15110556 ATCCTTTTGA
* * *
15110566 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATGCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
15110629 -TGCCATGCCTTGGCATCGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATCGTCTTACATGGGACCTTTGCCTTATAGT
* * * *
15110674 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTTCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
* *
15110739 TTCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATCGTCTTACATGG
15110767 TATATTTAAA
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.58
109 7 0.09
110 26 0.32
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATCGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:15115541 original size:44 final size:44
Alignment explanation
Indices: 15115493--15115695 Score: 106
Period size: 43 Copynumber: 4.7 Consensus size: 44
15115483 CTTCGATCTT
15115493 CTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCCC
1 CTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCCC
* * * *
15115537 CTCTCTGAC-AATA-GAGAGATGCCAAATC---ATCTT-AGATCCA
1 CTCTCCGTCAAATATG-GAGATGCCAAATCTGTTTCTTCA-ATCCC
* * * * * * **
15115577 CT-TCAGAGT-AAACACCT-GA-AGGTCAGATCTGCTATGTCTTCGATCTT
1 CTCTC--CGTCAAATA--TGGAGATGCCAAATCTG-T-T-TCTTCAATCCC
15115624 CTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCCC
1 CTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCCC
* *
15115668 CTCTCTGAC-AATA-GAGAGATGCCAAATC
1 CTCTCCGTCAAATATG-GAGATGCCAAATC
15115696 ATCTTGGATC
Statistics
Matches: 115, Mismatches: 24, Indels: 41
0.64 0.13 0.23
Matches are distributed among these distances:
39 3 0.03
40 10 0.09
41 11 0.10
42 4 0.03
43 34 0.30
44 22 0.19
45 2 0.02
46 5 0.04
47 22 0.19
48 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (44 bp):
CTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCCC
Found at i:15115544 original size:220 final size:220
Alignment explanation
Indices: 15115160--15115617 Score: 666
Period size: 220 Copynumber: 2.1 Consensus size: 220
15115150 NNNNNNNNGT
* ***
15115160 CAGATCTGCTATGTCTTCGATTTGCTCCTGGTAAACACAAGAATGCCAAATAATATTGTTTCTGC
1 CAGATCTGCTATGTCTTCAATTTGCTCCTGGTAAACACAAGAATGCCAAATAATATTGGACCTGC
* *
15115225 TTTGATGTGAAAACAACCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAA
66 TTCGATGTGAAAACAACCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATAA
** ****
15115290 AGATGCCAAATCTATTTCTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATC
131 AGATGCCAAATCTATTTCTTCAATCCCCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATC
* *
15115355 TACTTCA-ATGTAATCACCTGAAGGC
196 CACTTCAGA-GTAAACACCTGAAGGC
* * * * *
15115380 CAGATCTGCTATGTCTTCAATTTGCTCCTTGTAAACAGAATAATGCCAAATCATCTTGGACCTGC
1 CAGATCTGCTATGTCTTCAATTTGCTCCTGGTAAACACAAGAATGCCAAATAATATTGGACCTGC
* * **
15115445 TTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTTCTCTCCGTCAAATATGG
66 TTCGATGTGAAAACAACCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATAA
* *
15115510 AGATGCCAAATCTGTTTCTTCAATCCCCTCTCTGACAATAGAGAGATGCCAAATCATCTTAGATC
131 AGATGCCAAATCTATTTCTTCAATCCCCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATC
*
15115575 CACTTCAGAGTAAACACCTGAAGGT
196 CACTTCAGAGTAAACACCTGAAGGC
15115600 CAGATCTGCTATGTCTTC
1 CAGATCTGCTATGTCTTC
15115618 GATCTTCTCT
Statistics
Matches: 211, Mismatches: 26, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
220 210 1.00
221 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (220 bp):
CAGATCTGCTATGTCTTCAATTTGCTCCTGGTAAACACAAGAATGCCAAATAATATTGGACCTGC
TTCGATGTGAAAACAACCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATAA
AGATGCCAAATCTATTTCTTCAATCCCCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATC
CACTTCAGAGTAAACACCTGAAGGC
Found at i:15115612 original size:131 final size:131
Alignment explanation
Indices: 15115464--15115748 Score: 525
Period size: 131 Copynumber: 2.2 Consensus size: 131
15115454 AAAACATCCA
15115464 AAGGTCAGATCTGCTATGTCTTCGATCTTCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCT
1 AAGGTCAGATCTGCTATGTCTTCGATCTTCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCT
15115529 TCAATCCCCTCTCTGACAATAGAGAGATGCCAAATCATCTTAGATCCACTTCAGAGTAAACACCT
66 TCAATCCCCTCTCTGACAATAGAGAGATGCCAAATCATCTTAGATCCACTTCAGAGTAAACACCT
15115594 G
131 G
15115595 AAGGTCAGATCTGCTATGTCTTCGATCTTCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCT
1 AAGGTCAGATCTGCTATGTCTTCGATCTTCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCT
* * * *
15115660 TCAATCCCCTCTCTGACAATAGAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTGAACACCT
66 TCAATCCCCTCTCTGACAATAGAGAGATGCCAAATCATCTTAGATCCACTTCAGAGTAAACACCT
15115725 G
131 G
*
15115726 CAGGTCAGATCTGCTATGTCTTC
1 AAGGTCAGATCTGCTATGTCTTC
15115749 AATTTACTCC
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
131 149 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (131 bp):
AAGGTCAGATCTGCTATGTCTTCGATCTTCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCT
TCAATCCCCTCTCTGACAATAGAGAGATGCCAAATCATCTTAGATCCACTTCAGAGTAAACACCT
G
Found at i:15115967 original size:200 final size:200
Alignment explanation
Indices: 15115613--15115994 Score: 575
Period size: 200 Copynumber: 1.9 Consensus size: 200
15115603 ATCTGCTATG
*
15115613 TCTTCGATCTTCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCCCCTCTCTGACA
1 TCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCCCCTCTCTGACA
* * * * *
15115678 ATAGAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTGAACACCTGCAGGTCAGATCTGCTAT
66 ATACAGAGATGCCAAATCATCTTAGATCTACTTCAGTGTAAACACCTGAAGGTCAGATCTACTAT
*
15115743 GTCTTCAATTTACTCCTCGTAAACACAAGAATTCTAAATCATCTTGGATCTGCTTCGATGTGAAA
131 GTCTTCAATTTACTCCTCGTAAACACAAGAATTCCAAATCATCTTGGATCTGCTTCGATGTGAAA
15115808 ACATC
196 ACATC
* * * * * ****
15115813 TCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAATTTGTTTTTTCGATTTGTTCTCTGACA
1 TCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCCCCTCTCTGACA
*
15115878 ATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTACTAT
66 ATACAGAGATGCCAAATCATCTTAGATCTACTTCAGTGTAAACACCTGAAGGTCAGATCTACTAT
* * * *
15115943 TTCTTCGATTTACTCCTTGTAAACACAAGAATTCCAATTCATCTTGGATCTG
131 GTCTTCAATTTACTCCTCGTAAACACAAGAATTCCAAATCATCTTGGATCTG
15115995 AAAATATCCG
Statistics
Matches: 161, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
200 161 1.00
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (200 bp):
TCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCCCCTCTCTGACA
ATACAGAGATGCCAAATCATCTTAGATCTACTTCAGTGTAAACACCTGAAGGTCAGATCTACTAT
GTCTTCAATTTACTCCTCGTAAACACAAGAATTCCAAATCATCTTGGATCTGCTTCGATGTGAAA
ACATC
Found at i:15123783 original size:7 final size:7
Alignment explanation
Indices: 15123771--15123840 Score: 63
Period size: 7 Copynumber: 9.9 Consensus size: 7
15123761 GCCTATCCAA
15123771 TTTTTTC
1 TTTTTTC
15123778 TTTTTTC
1 TTTTTTC
15123785 TTTTTTC
1 TTTTTTC
15123792 TCTTTTT-
1 T-TTTTTC
* *
15123799 TCTTTCTA
1 T-TTTTTC
15123807 TTTTTTC
1 TTTTTTC
15123814 TCTTTTTC
1 T-TTTTTC
*
15123822 TTTTCT-
1 TTTTTTC
*
15123828 TTTTTTA
1 TTTTTTC
15123835 TTTTTT
1 TTTTTT
15123841 TTTGAAATAG
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
6 5 0.09
7 36 0.67
8 13 0.24
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTTTTC
Found at i:15123790 original size:9 final size:9
Alignment explanation
Indices: 15123778--15123843 Score: 53
Period size: 9 Copynumber: 6.7 Consensus size: 9
15123768 CAATTTTTTC
15123778 TTTTTTCTT
1 TTTTTTCTT
*
15123787 TTTTCTCTTT
1 TTTTTTC-TT
15123797 TTTCTTTCTAT
1 TTT-TTTCT-T
15123808 TTTTTCTCTTT
1 TTTTT-TC-TT
15123819 TTCTTTTCTT
1 TT-TTTTCTT
15123829 TTTTTAT-TT
1 TTTTT-TCTT
15123838 TTTTTT
1 TTTTTT
15123844 GAAATAGAAG
Statistics
Matches: 48, Mismatches: 2, Indels: 15
0.74 0.03 0.23
Matches are distributed among these distances:
8 1 0.02
9 16 0.33
10 13 0.27
11 14 0.29
12 4 0.08
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:15123795 original size:16 final size:15
Alignment explanation
Indices: 15123771--15123840 Score: 67
Period size: 13 Copynumber: 4.9 Consensus size: 15
15123761 GCCTATCCAA
15123771 TTTTTTCTTTTTTCT
1 TTTTTTCTTTTTTCT
15123786 TTTTTCTCTTTTTTC-
1 TTTTT-TCTTTTTTCT
* *
15123801 -TTTCTATTTTTTCT
1 TTTTTTCTTTTTTCT
*
15123815 CTTTTTC--TTTTCT
1 TTTTTTCTTTTTTCT
*
15123828 TTTTTTATTTTTT
1 TTTTTTCTTTTTT
15123841 TTTGAAATAG
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
13 19 0.43
14 3 0.07
15 13 0.30
16 9 0.20
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTTCTTTTTTCT
Found at i:15123804 original size:13 final size:12
Alignment explanation
Indices: 15123771--15123843 Score: 59
Period size: 11 Copynumber: 6.4 Consensus size: 12
15123761 GCCTATCCAA
15123771 TTTTTTCTTT-T
1 TTTTTTCTTTCT
*
15123782 TTCTTT-TTTCT
1 TTTTTTCTTTCT
15123793 CTTTTTTCTTTCT
1 -TTTTTTCTTTCT
15123806 ATTTTTTC--TCT
1 -TTTTTTCTTTCT
*
15123817 TTTTCT-TTTCT
1 TTTTTTCTTTCT
*
15123828 TTTTTTATTT-T
1 TTTTTTCTTTCT
15123839 TTTTT
1 TTTTT
15123844 GAAATAGAAG
Statistics
Matches: 51, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
10 8 0.16
11 23 0.45
12 8 0.16
13 12 0.24
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTTTTCTTTCT
Done.