Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 48 of 235
Found at i:15959032 original size:6 final size:6
Alignment explanation
Indices: 15959021--15959063 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
15959011 CGTTCATTCT
** *
15959021 CTTTTC CTTTTC CTTTTC CTTTTTC AGTTTC TTTTTC CTTTTC
1 CTTTTC CTTTTC CTTTTC C-TTTTC CTTTTC CTTTTC CTTTTC
15959064 AATTTCTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
6 26 0.84
7 5 0.16
ACGTcount: A:0.02, C:0.28, G:0.02, T:0.67
Consensus pattern (6 bp):
CTTTTC
Found at i:15959074 original size:18 final size:19
Alignment explanation
Indices: 15959029--15959075 Score: 69
Period size: 18 Copynumber: 2.5 Consensus size: 19
15959019 CTCTTTTCCT
* *
15959029 TTTCCTTTTCCTTTTTCAG
1 TTTCTTTTTCCTTTTTCAA
15959048 TTTCTTTTTCC-TTTTCAA
1 TTTCTTTTTCCTTTTTCAA
15959066 TTTCTTTTTC
1 TTTCTTTTTC
15959076 TCTCATTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 16 0.62
19 10 0.38
ACGTcount: A:0.06, C:0.23, G:0.02, T:0.68
Consensus pattern (19 bp):
TTTCTTTTTCCTTTTTCAA
Found at i:15959097 original size:21 final size:21
Alignment explanation
Indices: 15959060--15959110 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
15959050 TCTTTTTCCT
15959060 TTTCAATTTCTTTTTCTCTC-A
1 TTTC-ATTTCTTTTTCTCTCAA
*
15959081 TTTCATTTTTTTCTTCTCTCAA
1 TTTCATTTCTTT-TTCTCTCAA
15959103 TTTCATTT
1 TTTCATTT
15959111 AAGAGTCGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 7 0.26
21 11 0.41
22 9 0.33
ACGTcount: A:0.14, C:0.22, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTCATTTCTTTTTCTCTCAA
Found at i:15959108 original size:22 final size:20
Alignment explanation
Indices: 15959042--15959110 Score: 72
Period size: 18 Copynumber: 3.4 Consensus size: 20
15959032 CCTTTTCCTT
15959042 TTTCAGTTTCTTTTTC-CT--
1 TTTCA-TTTCTTTTTCTCTCA
15959060 TTTCAATTTCTTTTTCTCTCA
1 TTTC-ATTTCTTTTTCTCTCA
*
15959081 TTTCATTTTTTTCTTCTCTCAA
1 TTTCATTTCTTT-TTCTCTC-A
15959103 TTTCATTT
1 TTTCATTT
15959111 AAGAGTCGTT
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
18 14 0.32
19 3 0.07
20 7 0.16
21 11 0.25
22 9 0.20
ACGTcount: A:0.12, C:0.22, G:0.01, T:0.65
Consensus pattern (20 bp):
TTTCATTTCTTTTTCTCTCA
Found at i:15960966 original size:18 final size:18
Alignment explanation
Indices: 15960943--15960980 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
15960933 TAGCCCATTT
15960943 CAGTAACAGTAATCAATG
1 CAGTAACAGTAATCAATG
*
15960961 CAGTAACAGTAATCAGTG
1 CAGTAACAGTAATCAATG
15960979 CA
1 CA
15960981 ATATACAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.21
Consensus pattern (18 bp):
CAGTAACAGTAATCAATG
Found at i:15961278 original size:18 final size:18
Alignment explanation
Indices: 15961255--15961292 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
15961245 TAGCCCATTT
15961255 CAGTAACAGTAATCAATG
1 CAGTAACAGTAATCAATG
*
15961273 CAGTAACAGTAATCAGTG
1 CAGTAACAGTAATCAATG
15961291 CA
1 CA
15961293 ATATACAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.21
Consensus pattern (18 bp):
CAGTAACAGTAATCAATG
Found at i:15961337 original size:312 final size:312
Alignment explanation
Indices: 15960772--15961395 Score: 1248
Period size: 312 Copynumber: 2.0 Consensus size: 312
15960762 CTCCGAGTCC
15960772 TTCGTAGCACCGATCCGCCTAAGGATTACTTGTACAGTTAATACAGTGGGGTGAGTTTACGAAAA
1 TTCGTAGCACCGATCCGCCTAAGGATTACTTGTACAGTTAATACAGTGGGGTGAGTTTACGAAAA
15960837 CTCAGTGTGTAATCCCATAATAACACAAAGATAGACATGCAGAGAGCGAATACATCTGGGCCAAG
66 CTCAGTGTGTAATCCCATAATAACACAAAGATAGACATGCAGAGAGCGAATACATCTGGGCCAAG
15960902 CCCATATCAGTAACAGTAGCAGTCTGGGCCTTAGCCCATTTCAGTAACAGTAATCAATGCAGTAA
131 CCCATATCAGTAACAGTAGCAGTCTGGGCCTTAGCCCATTTCAGTAACAGTAATCAATGCAGTAA
15960967 CAGTAATCAGTGCAATATACAAGAAGAAAATCCTACCCAATCCACCCTCTACACACCATCTTCGT
196 CAGTAATCAGTGCAATATACAAGAAGAAAATCCTACCCAATCCACCCTCTACACACCATCTTCGT
15961032 ACCAACCATACACACCATGTGGGAATAAAATTGATCCAGCCAGCCCTACACA
261 ACCAACCATACACACCATGTGGGAATAAAATTGATCCAGCCAGCCCTACACA
15961084 TTCGTAGCACCGATCCGCCTAAGGATTACTTGTACAGTTAATACAGTGGGGTGAGTTTACGAAAA
1 TTCGTAGCACCGATCCGCCTAAGGATTACTTGTACAGTTAATACAGTGGGGTGAGTTTACGAAAA
15961149 CTCAGTGTGTAATCCCATAATAACACAAAGATAGACATGCAGAGAGCGAATACATCTGGGCCAAG
66 CTCAGTGTGTAATCCCATAATAACACAAAGATAGACATGCAGAGAGCGAATACATCTGGGCCAAG
15961214 CCCATATCAGTAACAGTAGCAGTCTGGGCCTTAGCCCATTTCAGTAACAGTAATCAATGCAGTAA
131 CCCATATCAGTAACAGTAGCAGTCTGGGCCTTAGCCCATTTCAGTAACAGTAATCAATGCAGTAA
15961279 CAGTAATCAGTGCAATATACAAGAAGAAAATCCTACCCAATCCACCCTCTACACACCATCTTCGT
196 CAGTAATCAGTGCAATATACAAGAAGAAAATCCTACCCAATCCACCCTCTACACACCATCTTCGT
15961344 ACCAACCATACACACCATGTGGGAATAAAATTGATCCAGCCAGCCCTACACA
261 ACCAACCATACACACCATGTGGGAATAAAATTGATCCAGCCAGCCCTACACA
15961396 CCAAGTAGCA
Statistics
Matches: 312, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
312 312 1.00
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.22
Consensus pattern (312 bp):
TTCGTAGCACCGATCCGCCTAAGGATTACTTGTACAGTTAATACAGTGGGGTGAGTTTACGAAAA
CTCAGTGTGTAATCCCATAATAACACAAAGATAGACATGCAGAGAGCGAATACATCTGGGCCAAG
CCCATATCAGTAACAGTAGCAGTCTGGGCCTTAGCCCATTTCAGTAACAGTAATCAATGCAGTAA
CAGTAATCAGTGCAATATACAAGAAGAAAATCCTACCCAATCCACCCTCTACACACCATCTTCGT
ACCAACCATACACACCATGTGGGAATAAAATTGATCCAGCCAGCCCTACACA
Found at i:15961752 original size:27 final size:27
Alignment explanation
Indices: 15961638--15961754 Score: 112
Period size: 27 Copynumber: 4.3 Consensus size: 27
15961628 GAACAAATCT
* * * *
15961638 GTCATTTTACCTTACCG-GGGTATTACA
1 GTCATTTTACCCTA-TGAGGGTATTTCG
* *
15961665 GTCAATTTACCCTA-CAGGGGTATTTCG
1 GTCATTTTACCCTATGA-GGGTATTTCG
* *
15961692 ATCATTCTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* *
15961719 GTTATTTTACCCTATGAGGGTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTCG
15961746 GTCATTTTA
1 GTCATTTTA
15961755 TCACATAAGG
Statistics
Matches: 73, Mismatches: 14, Indels: 6
0.78 0.15 0.06
Matches are distributed among these distances:
27 72 0.99
28 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (27 bp):
GTCATTTTACCCTATGAGGGTATTTCG
Found at i:15961765 original size:27 final size:27
Alignment explanation
Indices: 15961708--15961793 Score: 75
Period size: 27 Copynumber: 3.2 Consensus size: 27
15961698 CTACCCTATG
* * * *
15961708 AGGGTATTTCGGTTATTTTA-CCCTATG
1 AGGGTATTTTGGTCATTTTATCAC-ATA
15961735 AGGGTATTTTGGTCATTTTATCACATA
1 AGGGTATTTTGGTCATTTTATCACATA
*** * *
15961762 AGGGTAAAATCGTCATTTTATCACGTA
1 AGGGTATTTTGGTCATTTTATCACATA
15961789 AGGGT
1 AGGGT
15961794 TCAGGTACGC
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
27 47 0.96
28 2 0.04
ACGTcount: A:0.26, C:0.13, G:0.22, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGGTCATTTTATCACATA
Found at i:15964943 original size:20 final size:21
Alignment explanation
Indices: 15964918--15964956 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
15964908 TAAAATGAGC
*
15964918 AAACGAGCT-CATTGAGCTGG
1 AAACGAGCTGAATTGAGCTGG
15964938 AAACGAGCTGAATTGAGCT
1 AAACGAGCTGAATTGAGCT
15964957 CAATGAGCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.21
Consensus pattern (21 bp):
AAACGAGCTGAATTGAGCTGG
Found at i:15966507 original size:40 final size:40
Alignment explanation
Indices: 15966470--15966654 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
15966460 GCTACTCGTT
*
15966470 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
15966510 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
15966550 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
15966589 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
15966630 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
15966655 CATCATTCAA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.62
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:15966581 original size:79 final size:81
Alignment explanation
Indices: 15966470--15966652 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
15966460 GCTACTCGTT
* **
15966470 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
15966534 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
15966550 CAAATGCCTTCGGG-CTTAGCCCGAA-ATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGAATA-TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
15966613 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
15966630 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
15966653 GACATCATTC
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 4 0.04
79 54 0.61
80 31 0.35
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:15970156 original size:18 final size:18
Alignment explanation
Indices: 15970079--15970159 Score: 58
Period size: 18 Copynumber: 4.4 Consensus size: 18
15970069 TCTTGCTTAC
* *
15970079 TTTCTTTTT-TATCTCAA
1 TTTCTTTTTCTTTTTCAA
*
15970096 TCTCTTTTTGCTTTCGTTC-A
1 TTTCTTTTT-CTTT--TTCAA
* **
15970116 TTCTCTTTTCCTTTTTCGG
1 TT-TCTTTTTCTTTTTCAA
15970135 TTTCTTTTTCTTTTTCAA
1 TTTCTTTTTCTTTTTCAA
15970153 TTTCTTT
1 TTTCTTT
15970160 GTCTCTCATT
Statistics
Matches: 49, Mismatches: 9, Indels: 11
0.71 0.13 0.16
Matches are distributed among these distances:
17 8 0.16
18 23 0.47
19 4 0.08
20 6 0.12
21 8 0.16
ACGTcount: A:0.07, C:0.21, G:0.05, T:0.67
Consensus pattern (18 bp):
TTTCTTTTTCTTTTTCAA
Found at i:15970480 original size:41 final size:41
Alignment explanation
Indices: 15970374--15970550 Score: 218
Period size: 41 Copynumber: 4.3 Consensus size: 41
15970364 AAAAAAATTG
***
15970374 TAAAACAT-AGAGCAATAGCGGCG-TTTTACCAAAAACGCCGC
1 TAAAA-ATAAGAGCAATAGCGGCGCTTTT-GGTAAAACGCCGC
* *
15970415 TAAAAA-CAGAGCAATAGCGTCGCTTTTGGTAAAACGCCGC
1 TAAAAATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
*
15970455 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
* * *
15970496 TAAAAAT-CGAAGCAATAGCGGCACTTTTGGTAAAATGCCGC
1 TAAAAATAAG-AGCAATAGCGGCGCTTTTGGTAAAACGCCGC
15970537 TAAAAATAAGAGCA
1 TAAAAATAAGAGCA
15970551 TTAAAGCGCC
Statistics
Matches: 119, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
40 32 0.27
41 86 0.72
42 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.20
Consensus pattern (41 bp):
TAAAAATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
Found at i:15970569 original size:67 final size:67
Alignment explanation
Indices: 15970485--15970610 Score: 216
Period size: 67 Copynumber: 1.9 Consensus size: 67
15970475 GCGCTTTTGG
*
15970485 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGGTAAAATGCCGCTAAAAATAAGAGC
1 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGGTAAAACGCCGCTAAAAATAAGAGC
15970550 AT
66 AT
* * *
15970552 TAAAGCGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAT
1 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGGTAAAACGCCGCTAAAAAT
15970611 CGAAGCAATA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 55 1.00
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.20
Consensus pattern (67 bp):
TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGGTAAAACGCCGCTAAAAATAAGAGC
AT
Found at i:15970590 original size:108 final size:108
Alignment explanation
Indices: 15970444--15971365 Score: 1760
Period size: 108 Copynumber: 8.5 Consensus size: 108
15970434 TCGCTTTTGG
* *
15970444 TAAAACGCCGCTAAAAAT-AAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCGAAG
1 TAAAGCGCCGCTAAAAATCGA-AGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCGAAG
15970508 CAATAGCGGCACTTTTGGTAAAATGCCGCTAAAAATAAGAGCAT
65 CAATAGCGGCACTTTTGGTAAAATGCCGCTAAAAATAAGAGCAT
15970552 TAAAGCGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCGAAGC
1 TAAAGCGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCGAAGC
15970617 AATAGCGGCACTTTTGGTAAAATGCCGCTAAAAATAAGAGCAT
66 AATAGCGGCACTTTTGGTAAAATGCCGCTAAAAATAAGAGCAT
15970660 TAAAGCGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCGAAGC
1 TAAAGCGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCGAAGC
15970725 AATAGCGGCACTTTTGGTAAAATGCCGCTAAAAATAAGAGCAT
66 AATAGCGGCACTTTTGGTAAAATGCCGCTAAAAATAAGAGCAT
15970768 TAAAGCGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCGAAGC
1 TAAAGCGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCGAAGC
15970833 AATAGCGGCACTTTTGGTAAAATGCCGCTAAAAATAAGAGCAT
66 AATAGCGGCACTTTTGGTAAAATGCCGCTAAAAATAAGAGCAT
15970876 TAAAGCGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCGAAGC
1 TAAAGCGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCGAAGC
15970941 AATAGCGGCACTTTTGGTAAAATGCCGCTAAAAATAAGAGCAT
66 AATAGCGGCACTTTTGGTAAAATGCCGCTAAAAATAAGAGCAT
15970984 TAAAGCGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCGAAGC
1 TAAAGCGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCGAAGC
15971049 AATAGCGGCACTTTTGGTAAAATGCCGCTAAAAATAAGAGCAT
66 AATAGCGGCACTTTTGGTAAAATGCCGCTAAAAATAAGAGCAT
*
15971092 TAAAGCGCCGCTAAAAAT-AAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCGAAG
1 TAAAGCGCCGCTAAAAATCGA-AGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCGAAG
15971156 CAATAGCGGCACTTTTGGTAAAATGCCGCTAAAAATAAGAGCAT
65 CAATAGCGGCACTTTTGGTAAAATGCCGCTAAAAATAAGAGCAT
15971200 TAAAGCGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCGAAGC
1 TAAAGCGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCGAAGC
15971265 AATAGCGGCACTTTTGGTAAAATGCCGCTAAAAATAAGAGCAT
66 AATAGCGGCACTTTTGGTAAAATGCCGCTAAAAATAAGAGCAT
*
15971308 TAAAGCGCCGCTAAAAAT-AAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAA
1 TAAAGCGCCGCTAAAAATCGA-AGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAA
15971366 GTTTAGGGTT
Statistics
Matches: 805, Mismatches: 5, Indels: 8
0.98 0.01 0.01
Matches are distributed among these distances:
107 2 0.00
108 801 1.00
109 2 0.00
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (108 bp):
TAAAGCGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCGAAGC
AATAGCGGCACTTTTGGTAAAATGCCGCTAAAAATAAGAGCAT
Found at i:15970602 original size:41 final size:41
Alignment explanation
Indices: 15970552--15970651 Score: 164
Period size: 41 Copynumber: 2.4 Consensus size: 41
15970542 ATAAGAGCAT
* * *
15970552 TAAAGCGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGG
1 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGG
15970593 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGG
1 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGG
*
15970634 TAAAATGCCGCTAAAAAT
1 TAAAACGCCGCTAAAAAT
15970652 AAGAGCATTA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 55 1.00
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (41 bp):
TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGG
Found at i:15970669 original size:67 final size:67
Alignment explanation
Indices: 15970593--15970718 Score: 216
Period size: 67 Copynumber: 1.9 Consensus size: 67
15970583 GCGCTTTTGG
*
15970593 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGGTAAAATGCCGCTAAAAATAAGAGC
1 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGGTAAAACGCCGCTAAAAATAAGAGC
15970658 AT
66 AT
* * *
15970660 TAAAGCGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAT
1 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGGTAAAACGCCGCTAAAAAT
15970719 CGAAGCAATA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 55 1.00
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.20
Consensus pattern (67 bp):
TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGGTAAAACGCCGCTAAAAATAAGAGC
AT
Found at i:15970710 original size:41 final size:41
Alignment explanation
Indices: 15970660--15970759 Score: 164
Period size: 41 Copynumber: 2.4 Consensus size: 41
15970650 ATAAGAGCAT
* * *
15970660 TAAAGCGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGG
1 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGG
15970701 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGG
1 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGG
*
15970742 TAAAATGCCGCTAAAAAT
1 TAAAACGCCGCTAAAAAT
15970760 AAGAGCATTA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 55 1.00
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (41 bp):
TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGG
Found at i:15970777 original size:67 final size:67
Alignment explanation
Indices: 15970701--15970826 Score: 216
Period size: 67 Copynumber: 1.9 Consensus size: 67
15970691 GCGCTTTTGG
*
15970701 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGGTAAAATGCCGCTAAAAATAAGAGC
1 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGGTAAAACGCCGCTAAAAATAAGAGC
15970766 AT
66 AT
* * *
15970768 TAAAGCGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAT
1 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGGTAAAACGCCGCTAAAAAT
15970827 CGAAGCAATA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 55 1.00
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.20
Consensus pattern (67 bp):
TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGGTAAAACGCCGCTAAAAATAAGAGC
AT
Found at i:15970818 original size:41 final size:41
Alignment explanation
Indices: 15970768--15970867 Score: 164
Period size: 41 Copynumber: 2.4 Consensus size: 41
15970758 ATAAGAGCAT
* * *
15970768 TAAAGCGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGG
1 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGG
15970809 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGG
1 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGG
*
15970850 TAAAATGCCGCTAAAAAT
1 TAAAACGCCGCTAAAAAT
15970868 AAGAGCATTA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 55 1.00
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (41 bp):
TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGG
Found at i:15970885 original size:67 final size:67
Alignment explanation
Indices: 15970809--15970934 Score: 216
Period size: 67 Copynumber: 1.9 Consensus size: 67
15970799 GCGCTTTTGG
*
15970809 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGGTAAAATGCCGCTAAAAATAAGAGC
1 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGGTAAAACGCCGCTAAAAATAAGAGC
15970874 AT
66 AT
* * *
15970876 TAAAGCGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAT
1 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGGTAAAACGCCGCTAAAAAT
15970935 CGAAGCAATA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 55 1.00
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.20
Consensus pattern (67 bp):
TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGGTAAAACGCCGCTAAAAATAAGAGC
AT
Found at i:15970926 original size:41 final size:41
Alignment explanation
Indices: 15970876--15970975 Score: 164
Period size: 41 Copynumber: 2.4 Consensus size: 41
15970866 ATAAGAGCAT
* * *
15970876 TAAAGCGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGG
1 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGG
15970917 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGG
1 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGG
*
15970958 TAAAATGCCGCTAAAAAT
1 TAAAACGCCGCTAAAAAT
15970976 AAGAGCATTA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 55 1.00
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (41 bp):
TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGG
Found at i:15970993 original size:67 final size:67
Alignment explanation
Indices: 15970917--15971042 Score: 216
Period size: 67 Copynumber: 1.9 Consensus size: 67
15970907 GCGCTTTTGG
*
15970917 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGGTAAAATGCCGCTAAAAATAAGAGC
1 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGGTAAAACGCCGCTAAAAATAAGAGC
15970982 AT
66 AT
* * *
15970984 TAAAGCGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAT
1 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGGTAAAACGCCGCTAAAAAT
15971043 CGAAGCAATA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 55 1.00
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.20
Consensus pattern (67 bp):
TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGGTAAAACGCCGCTAAAAATAAGAGC
AT
Found at i:15971034 original size:41 final size:41
Alignment explanation
Indices: 15970984--15971083 Score: 164
Period size: 41 Copynumber: 2.4 Consensus size: 41
15970974 ATAAGAGCAT
* * *
15970984 TAAAGCGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGG
1 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGG
15971025 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGG
1 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGG
*
15971066 TAAAATGCCGCTAAAAAT
1 TAAAACGCCGCTAAAAAT
15971084 AAGAGCATTA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 55 1.00
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (41 bp):
TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGG
Found at i:15971101 original size:67 final size:67
Alignment explanation
Indices: 15971025--15971150 Score: 191
Period size: 67 Copynumber: 1.9 Consensus size: 67
15971015 GCGCTTTTGG
* *
15971025 TAAAACGCCGCTAAAAAT-CGAAGCAATAGCGGCACTTTTGGTAAAATGCCGCTAAAAATAAGAG
1 TAAAACGCCGCTAAAAATAAG-AGCAATAGCGGCACTTTTGGTAAAACGCCGCTAAAAATAAGAG
15971089 CAT
65 CAT
* * *
15971092 TAAAGCGCCGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAT
1 TAAAACGCCGCTAAAAATAAGAGCAATAGCGGCACTTTTGGTAAAACGCCGCTAAAAAT
15971151 CGAAGCAATA
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
67 52 0.98
68 1 0.02
ACGTcount: A:0.40, C:0.20, G:0.21, T:0.20
Consensus pattern (67 bp):
TAAAACGCCGCTAAAAATAAGAGCAATAGCGGCACTTTTGGTAAAACGCCGCTAAAAATAAGAGC
AT
Found at i:15971127 original size:24 final size:25
Alignment explanation
Indices: 15971072--15971127 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 25
15971062 TTGGTAAAAT
15971072 GCCGCTAAAAATAAGAGCATTAAAGC
1 GCCGCTAAAAATAAGAGCATT-AAGC
15971098 GCCGCTAAAAATAAGAGCATT-AGC
1 GCCGCTAAAAATAAGAGCATTAAGC
*
15971122 GGCGCT
1 GCCGCT
15971128 TTTGGTAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 8 0.28
26 21 0.72
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.16
Consensus pattern (25 bp):
GCCGCTAAAAATAAGAGCATTAAGC
Found at i:15971142 original size:41 final size:41
Alignment explanation
Indices: 15971092--15971201 Score: 159
Period size: 41 Copynumber: 2.7 Consensus size: 41
15971082 ATAAGAGCAT
* *
15971092 TAAAGCGCCGCTAAAAATAAGAGCATTAGCGGCGCTTTTGG
1 TAAAACGCCGCTAAAAATAAGAGCATTAGCGGCACTTTTGG
* *
15971133 TAAAACGCCGCTAAAAAT-CGAAGCAATAGCGGCACTTTTGG
1 TAAAACGCCGCTAAAAATAAG-AGCATTAGCGGCACTTTTGG
*
15971174 TAAAATGCCGCTAAAAATAAGAGCATTA
1 TAAAACGCCGCTAAAAATAAGAGCATTA
15971202 AAGCGCCGCT
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
40 1 0.02
41 58 0.97
42 1 0.02
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.21
Consensus pattern (41 bp):
TAAAACGCCGCTAAAAATAAGAGCATTAGCGGCACTTTTGG
Found at i:15971209 original size:67 final size:67
Alignment explanation
Indices: 15971133--15971258 Score: 216
Period size: 67 Copynumber: 1.9 Consensus size: 67
15971123 GCGCTTTTGG
*
15971133 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGGTAAAATGCCGCTAAAAATAAGAGC
1 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGGTAAAACGCCGCTAAAAATAAGAGC
15971198 AT
66 AT
* * *
15971200 TAAAGCGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAT
1 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGGTAAAACGCCGCTAAAAAT
15971259 CGAAGCAATA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 55 1.00
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.20
Consensus pattern (67 bp):
TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGGTAAAACGCCGCTAAAAATAAGAGC
AT
Found at i:15971250 original size:41 final size:41
Alignment explanation
Indices: 15971200--15971299 Score: 164
Period size: 41 Copynumber: 2.4 Consensus size: 41
15971190 ATAAGAGCAT
* * *
15971200 TAAAGCGCCGCTAAAAATCGAAGCATTAGCGGCGCTTTTGG
1 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGG
15971241 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGG
1 TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGG
*
15971282 TAAAATGCCGCTAAAAAT
1 TAAAACGCCGCTAAAAAT
15971300 AAGAGCATTA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 55 1.00
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (41 bp):
TAAAACGCCGCTAAAAATCGAAGCAATAGCGGCACTTTTGG
Found at i:15971343 original size:24 final size:25
Alignment explanation
Indices: 15971288--15971343 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 25
15971278 TTGGTAAAAT
15971288 GCCGCTAAAAATAAGAGCATTAAAGC
1 GCCGCTAAAAATAAGAGCATT-AAGC
15971314 GCCGCTAAAAATAAGAGCATT-AGC
1 GCCGCTAAAAATAAGAGCATTAAGC
*
15971338 GGCGCT
1 GCCGCT
15971344 TTTGGTAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 8 0.28
26 21 0.72
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.16
Consensus pattern (25 bp):
GCCGCTAAAAATAAGAGCATTAAGC
Found at i:15971463 original size:21 final size:22
Alignment explanation
Indices: 15971439--15971482 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
15971429 GGTTTATGTA
*
15971439 TTATGGTTTAAGGGTT-GGGGT
1 TTATGATTTAAGGGTTAGGGGT
15971460 TTATGATTTAAGGGTTAGGGGT
1 TTATGATTTAAGGGTTAGGGGT
15971482 T
1 T
15971483 AGTGGTTAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.18, C:0.00, G:0.39, T:0.43
Consensus pattern (22 bp):
TTATGATTTAAGGGTTAGGGGT
Found at i:15971745 original size:21 final size:21
Alignment explanation
Indices: 15971719--15971762 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
15971709 TTATGGTTAG
* *
15971719 GGGATATAGTTTAGGGTTTAA
1 GGGATATACTTTAGGGATTAA
15971740 GGGATATACTTTAGGGATTAA
1 GGGATATACTTTAGGGATTAA
15971761 GG
1 GG
15971763 TTATAGGGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.02, G:0.34, T:0.34
Consensus pattern (21 bp):
GGGATATACTTTAGGGATTAA
Found at i:15972090 original size:11 final size:11
Alignment explanation
Indices: 15972074--15972121 Score: 51
Period size: 11 Copynumber: 4.0 Consensus size: 11
15972064 AATTTCCCCG
15972074 ATTTCCCCCAA
1 ATTTCCCCCAA
15972085 ATTTCCCCCAA
1 ATTTCCCCCAA
*
15972096 CTTCTTCTCCCTCAA
1 -AT-TTC-CCC-CAA
15972111 ATTTCCCCCAA
1 ATTTCCCCCAA
15972122 CTTCTTCTCC
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
11 14 0.45
12 4 0.13
13 6 0.19
14 4 0.13
15 3 0.10
ACGTcount: A:0.23, C:0.46, G:0.00, T:0.31
Consensus pattern (11 bp):
ATTTCCCCCAA
Found at i:15972113 original size:26 final size:26
Alignment explanation
Indices: 15972077--15972137 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 26
15972067 TTCCCCGATT
15972077 TCCCCCAAATTTCCCCCAACTTCTTC
1 TCCCCCAAATTTCCCCCAACTTCTTC
*
15972103 TCCCTCAAATTTCCCCCAACTTCTTC
1 TCCCCCAAATTTCCCCCAACTTCTTC
15972129 TCCCCCAAA
1 TCCCCCAAA
15972138 ATTTTTACCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.21, C:0.49, G:0.00, T:0.30
Consensus pattern (26 bp):
TCCCCCAAATTTCCCCCAACTTCTTC
Found at i:15972134 original size:15 final size:15
Alignment explanation
Indices: 15972088--15972136 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
15972078 CCCCCAAATT
15972088 TCCCCCAACTTCTTC
1 TCCCCCAACTTCTTC
* *
15972103 TCCCTCAA---ATT-
1 TCCCCCAACTTCTTC
15972114 TCCCCCAACTTCTTC
1 TCCCCCAACTTCTTC
15972129 TCCCCCAA
1 TCCCCCAA
15972137 AATTTTTACC
Statistics
Matches: 26, Mismatches: 4, Indels: 8
0.68 0.11 0.21
Matches are distributed among these distances:
11 7 0.27
12 2 0.08
14 2 0.08
15 15 0.58
ACGTcount: A:0.18, C:0.51, G:0.00, T:0.31
Consensus pattern (15 bp):
TCCCCCAACTTCTTC
Found at i:15975735 original size:64 final size:64
Alignment explanation
Indices: 15975661--15975794 Score: 232
Period size: 64 Copynumber: 2.1 Consensus size: 64
15975651 TAATAATTCT
** *
15975661 ATATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCAATCTAATATACAA
1 ATATTTCTATCACGATTTGCAATAAATTTATTTATTAATATAATATGTCCAATCTAATATACAA
*
15975725 ATATTTCTATCACGATTTGCAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
1 ATATTTCTATCACGATTTGCAATAAATTTATTTATTAATATAATATGTCCAATCTAATATACAA
15975789 ATATTT
1 ATATTT
15975795 AATAAAATAT
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.39, C:0.12, G:0.04, T:0.45
Consensus pattern (64 bp):
ATATTTCTATCACGATTTGCAATAAATTTATTTATTAATATAATATGTCCAATCTAATATACAA
Found at i:15975869 original size:24 final size:24
Alignment explanation
Indices: 15975842--15975912 Score: 108
Period size: 24 Copynumber: 3.0 Consensus size: 24
15975832 ATTATTATTG
*
15975842 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
*
15975866 AAATATTATTC-TCTGTTTTATCAC
1 AAATATTA-TCGTCCGTTTTATCAC
15975890 AAATATTATCGTCCGTTTTATCA
1 AAATATTATCGTCCGTTTTATCA
15975913 TTTAAGTTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
23 2 0.05
24 38 0.90
25 2 0.05
ACGTcount: A:0.28, C:0.20, G:0.07, T:0.45
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:15976130 original size:15 final size:15
Alignment explanation
Indices: 15976086--15976141 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
15976076 AACGACATGT
15976086 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
15976102 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
15976115 ATATTATTTAATTAA
1 ATATTATTTAATTAA
15976130 ATATTATTTAAT
1 ATATTATTTAAT
15976142 CCCGCTACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 3 0.08
13 7 0.19
14 2 0.06
15 16 0.44
16 5 0.14
17 3 0.08
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:15976286 original size:9 final size:9
Alignment explanation
Indices: 15976247--15976498 Score: 135
Period size: 9 Copynumber: 28.4 Consensus size: 9
15976237 ATTTGATATC
*
15976247 ATAATTTAT
1 ATAACTTAT
*
15976256 ATAACTTAC
1 ATAACTTAT
* * *
15976265 AAAACGTAC
1 ATAACTTAT
15976274 ATAACTTAT
1 ATAACTTAT
*
15976283 ATAACTTAG
1 ATAACTTAT
*
15976292 ATAA-ATAT
1 ATAACTTAT
15976300 ATAACTTAT
1 ATAACTTAT
*
15976309 ATAACTTAC
1 ATAACTTAT
15976318 ATAACTTAT
1 ATAACTTAT
* *
15976327 ATAACATAC
1 ATAACTTAT
15976336 ATAACTTAT
1 ATAACTTAT
*
15976345 ATAACATAT
1 ATAACTTAT
*
15976354 ATAACTTAC
1 ATAACTTAT
*
15976363 ATAACTTAC
1 ATAACTTAT
15976372 ATAA--TAGT
1 ATAACTTA-T
*
15976380 -TAA-ATAT
1 ATAACTTAT
**
15976387 AT-TTTATAT
1 ATAACT-TAT
* *
15976396 CATAATTTAC
1 -ATAACTTAT
*
15976406 ATAACTTAC
1 ATAACTTAT
* *
15976415 AAAACTTAC
1 ATAACTTAT
15976424 ATAACTTAT
1 ATAACTTAT
*
15976433 ATAACTTAG
1 ATAACTTAT
15976442 ATTAA--TAT
1 A-TAACTTAT
* *
15976450 ATAATTTAC
1 ATAACTTAT
*
15976459 ATAA-ATAT
1 ATAACTTAT
* *
15976467 ATATCATAT
1 ATAACTTAT
*
15976476 CATAACTTAC
1 -ATAACTTAT
*
15976486 ATAACTTAC
1 ATAACTTAT
15976495 ATAA
1 ATAA
15976499 TACTTAAATA
Statistics
Matches: 192, Mismatches: 38, Indels: 26
0.75 0.15 0.10
Matches are distributed among these distances:
7 9 0.05
8 17 0.09
9 151 0.79
10 13 0.07
11 2 0.01
ACGTcount: A:0.48, C:0.13, G:0.02, T:0.38
Consensus pattern (9 bp):
ATAACTTAT
Found at i:15976295 original size:18 final size:18
Alignment explanation
Indices: 15976246--15976498 Score: 173
Period size: 18 Copynumber: 14.3 Consensus size: 18
15976236 TATTTGATAT
*
15976246 CATAATTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
15976264 CAAAACGTACATAACTTA
1 CATAACTTATATAACTTA
* * *
15976282 TATAACTTAGATAA-ATA
1 CATAACTTATATAACTTA
*
15976299 TATAACTTATATAACTTA
1 CATAACTTATATAACTTA
*
15976317 CATAACTTATATAACATA
1 CATAACTTATATAACTTA
*
15976335 CATAACTTATATAACATA
1 CATAACTTATATAACTTA
* *
15976353 TATAACTTACATAACTTA
1 CATAACTTATATAACTTA
*
15976371 CATAA--TAGT-TAA-ATA
1 CATAACTTA-TATAACTTA
* ** *
15976386 TAT-TTTATATCATAATTTA
1 CATAACT-TAT-ATAACTTA
* *
15976405 CATAACTTACAAAACTTA
1 CATAACTTATATAACTTA
15976423 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* *
15976441 GATTAA--TATATAATTTA
1 CA-TAACTTATATAACTTA
* * *
15976458 CATAA-ATATATATCATA
1 CATAACTTATATAACTTA
*
15976475 TCATAACTTACATAACTTA
1 -CATAACTTATATAACTTA
15976494 CATAA
1 CATAA
15976499 TACTTAAATA
Statistics
Matches: 182, Mismatches: 40, Indels: 26
0.73 0.16 0.10
Matches are distributed among these distances:
15 4 0.02
16 9 0.05
17 36 0.20
18 115 0.63
19 17 0.09
20 1 0.01
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.38
Consensus pattern (18 bp):
CATAACTTATATAACTTA
Found at i:15976415 original size:43 final size:42
Alignment explanation
Indices: 15976317--15976522 Score: 143
Period size: 43 Copynumber: 5.1 Consensus size: 42
15976307 ATATAACTTA
* * *
15976317 CATAACTTATATAACATACAT-AACTT--ATATA--ACATAT
1 CATAACTTACATAACTTACATAAACTTAAATATATTTCATAT
* *
15976354 -ATAACTTACATAACTTACATAATAGTTAAATATATTTTATAT
1 CATAACTTACATAACTTACATAA-ACTTAAATATATTTCATAT
* * *
15976396 CATAATTTACATAACTTACA-AAACTTACATA-A---CTTAT
1 CATAACTTACATAACTTACATAAACTTAAATATATTTCATAT
* * * *
15976433 -ATAACTTAGATTAA--TATATAATTTACATAAATATATATCATAT
1 CATAACTTACA-TAACTTACATAA---ACTTAAATATATTTCATAT
*
15976476 CATAACTTACATAACTTACATAATACTTAAATATATATCATAT
1 CATAACTTACATAACTTACATAA-ACTTAAATATATTTCATAT
15976519 CATA
1 CATA
15976523 CATAACTAGT
Statistics
Matches: 131, Mismatches: 19, Indels: 32
0.72 0.10 0.18
Matches are distributed among these distances:
35 3 0.02
36 28 0.21
37 7 0.05
38 3 0.02
39 7 0.05
40 7 0.05
41 7 0.05
42 6 0.05
43 48 0.37
44 9 0.07
45 6 0.05
ACGTcount: A:0.47, C:0.14, G:0.01, T:0.38
Consensus pattern (42 bp):
CATAACTTACATAACTTACATAAACTTAAATATATTTCATAT
Found at i:15976452 original size:17 final size:17
Alignment explanation
Indices: 15976417--15976498 Score: 65
Period size: 17 Copynumber: 4.6 Consensus size: 17
15976407 TAACTTACAA
*
15976417 AACTTACATAACTTATAT
1 AACTTACATAA-ATATAT
* *
15976435 AACTTAGATTAATATAT
1 AACTTACATAAATATAT
*
15976452 AATTTACATAAATATAT
1 AACTTACATAAATATAT
* * * *
15976469 ATCATATCATAACTTACAT
1 AACTTA-CATAA-ATATAT
15976488 AACTTACATAA
1 AACTTACATAA
15976499 TACTTAAATA
Statistics
Matches: 49, Mismatches: 13, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
17 22 0.45
18 19 0.39
19 8 0.16
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (17 bp):
AACTTACATAAATATAT
Found at i:15976487 original size:150 final size:150
Alignment explanation
Indices: 15976215--15976498 Score: 426
Period size: 150 Copynumber: 1.9 Consensus size: 150
15976205 TGAAATAAAA
*
15976215 AACTTACATAATACATAAATATATTTGATATCATAATTTATATAACTTACAAAACGTACATAACT
1 AACTTACATAATACATAAATATATTTGATATCATAATTTACATAACTTACAAAACGTACATAACT
* * * *
15976280 TATATAACTTAGATAAATATATAACTTATATAACTTACATAACTTATATAACATACATAACTTAT
66 TATATAACTTAGATAAATATATAACTTACATAACATACATAACATATATAACATACATAACTTAC
15976345 ATAACATATATAACTTACAT
131 ATAACATATATAACTTACAT
** * *
15976365 AACTTACATAATAGTTAAATATATTTTATATCATAATTTACATAACTTACAAAACTTACATAACT
1 AACTTACATAATACATAAATATATTTGATATCATAATTTACATAACTTACAAAACGTACATAACT
* * * * *
15976430 TATATAACTTAGATTAATATATAATTTACATAA-ATATATATCATATCATAACTTACATAACTTA
66 TATATAACTTAGATAAATATATAACTTACATAACATACATAACATAT-ATAACATACATAACTTA
15976494 CATAA
130 CATAA
15976499 TACTTAAATA
Statistics
Matches: 119, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
149 9 0.08
150 110 0.92
ACGTcount: A:0.48, C:0.13, G:0.02, T:0.38
Consensus pattern (150 bp):
AACTTACATAATACATAAATATATTTGATATCATAATTTACATAACTTACAAAACGTACATAACT
TATATAACTTAGATAAATATATAACTTACATAACATACATAACATATATAACATACATAACTTAC
ATAACATATATAACTTACAT
Found at i:15981721 original size:13 final size:14
Alignment explanation
Indices: 15981705--15981733 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
15981695 TTATAAATAT
15981705 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
15981718 TTATAATTGTTTAA
1 TTATAATTGTTTAA
15981732 TT
1 TT
15981734 CAACTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:15982178 original size:21 final size:21
Alignment explanation
Indices: 15982153--15982195 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
15982143 GAGCGGAGGT
15982153 AGCAGAGAGGGAGGCAGCGGC
1 AGCAGAGAGGGAGGCAGCGGC
*
15982174 AGCAGCGAGGGAGGCAGCGGC
1 AGCAGAGAGGGAGGCAGCGGC
15982195 A
1 A
15982196 ACAGCGATGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.21, G:0.51, T:0.00
Consensus pattern (21 bp):
AGCAGAGAGGGAGGCAGCGGC
Found at i:15982211 original size:21 final size:21
Alignment explanation
Indices: 15982159--15982202 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
15982149 AGGTAGCAGA
*
15982159 GAGGGAGGCAGCGGCAGCAGC
1 GAGGGAGGCAGCGGCAACAGC
15982180 GAGGGAGGCAGCGGCAACAGC
1 GAGGGAGGCAGCGGCAACAGC
15982201 GA
1 GA
15982203 TGGTAGCAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.50, T:0.00
Consensus pattern (21 bp):
GAGGGAGGCAGCGGCAACAGC
Found at i:15982483 original size:31 final size:31
Alignment explanation
Indices: 15982445--15982511 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
15982435 TTAGTTATAT
*
15982445 TTTTATGCTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATGCTAAATTTGCTGTATTTGGCTGCA
* * * *
15982476 TTTTATGCTATATTTGTTGTATTTGGTTGGA
1 TTTTATGCTAAATTTGCTGTATTTGGCTGCA
15982507 TTTTA
1 TTTTA
15982512 ATGCAGGAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.16, C:0.07, G:0.19, T:0.57
Consensus pattern (31 bp):
TTTTATGCTAAATTTGCTGTATTTGGCTGCA
Found at i:15985980 original size:66 final size:66
Alignment explanation
Indices: 15985874--15986004 Score: 217
Period size: 66 Copynumber: 2.0 Consensus size: 66
15985864 CATTCATACA
* * *
15985874 TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAGTTATTTGA
1 TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATACCATCCTAATCATTTGA
15985939 T
66 T
* *
15985940 TCATTCATAACACGTCTAGTTAGGAGCATTTGATTCATTTCGATCATACCATCCTAATCATTTGA
1 TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATACCATCCTAATCATTTGA
15986005 CATAAGCATA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (66 bp):
TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATACCATCCTAATCATTTGA
T
Found at i:15986454 original size:44 final size:44
Alignment explanation
Indices: 15986405--15986571 Score: 151
Period size: 44 Copynumber: 3.8 Consensus size: 44
15986395 TGGAGTAGGC
*
15986405 CGAAGATTATAGATCTTAACCCCCTAAGCAGTAGGGAAACAAAT
1 CGAAGATGATAGATCTTAACCCCCTAAGCAGTAGGGAAACAAAT
** * * *
15986449 CGAAGATGAT-GGGCTTTAACCCCTTAAGCAGTAGGGTAAC-AAG
1 CGAAGATGATAGATC-TTAACCCCCTAAGCAGTAGGGAAACAAAT
* * * * * * *
15986492 CTGAA-TTTACAGATCTTAAACCCCTAAGTAGAAGGGAAACAGAT
1 C-GAAGATGATAGATCTTAACCCCCTAAGCAGTAGGGAAACAAAT
* **
15986536 CGAAGATGATGGGCCTTAACCCCCTAAGCAGTAGGG
1 CGAAGATGATAGATCTTAACCCCCTAAGCAGTAGGG
15986572 TAATAGGCTG
Statistics
Matches: 91, Mismatches: 27, Indels: 10
0.71 0.21 0.08
Matches are distributed among these distances:
43 30 0.33
44 61 0.67
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (44 bp):
CGAAGATGATAGATCTTAACCCCCTAAGCAGTAGGGAAACAAAT
Found at i:15986516 original size:87 final size:87
Alignment explanation
Indices: 15986415--15986574 Score: 266
Period size: 87 Copynumber: 1.8 Consensus size: 87
15986405 CGAAGATTAT
* * * *
15986415 AGATCTTAACCCCCTAAGCAGTAGGGAAACAAATCGAAGATGATGGGCTTTAACCCCTTAAGCAG
1 AGATCTTAAACCCCTAAGCAGAAGGGAAACAAATCGAAGATGATGGGCCTTAACCCCCTAAGCAG
15986480 TAGGGTAACAAGCTGAATTTAC
66 TAGGGTAACAAGCTGAATTTAC
* *
15986502 AGATCTTAAACCCCTAAGTAGAAGGGAAACAGATCGAAGATGATGGGCCTTAACCCCCTAAGCAG
1 AGATCTTAAACCCCTAAGCAGAAGGGAAACAAATCGAAGATGATGGGCCTTAACCCCCTAAGCAG
15986567 TAGGGTAA
66 TAGGGTAA
15986575 TAGGCTGGAA
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 67 1.00
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (87 bp):
AGATCTTAAACCCCTAAGCAGAAGGGAAACAAATCGAAGATGATGGGCCTTAACCCCCTAAGCAG
TAGGGTAACAAGCTGAATTTAC
Found at i:15987782 original size:84 final size:83
Alignment explanation
Indices: 15987671--15987838 Score: 309
Period size: 84 Copynumber: 2.0 Consensus size: 83
15987661 TTTCATGTTC
*
15987671 TTTTGATGAAAAAATGGAAGATTGGTGAAGTTGAGCCAAACAAATGAGCATGCATGTGCCTTAGA
1 TTTTGATGAAAAAATGGAAGATAGGTGAAGTTGAGCCAAACAAATGAGCATGCATGTGCCTTAGA
*
15987736 TGTTAAAGGGAAAAATCA
66 AGTTAAAGGGAAAAATCA
15987754 TTTTGATGAAAAAAATGGAAGATAGGTGAAGTTGAGCCAAACAAATGAGCATGCATGTGCCTTAG
1 TTTTGATG-AAAAAATGGAAGATAGGTGAAGTTGAGCCAAACAAATGAGCATGCATGTGCCTTAG
15987819 AAGTTAAAGGGAAAAATCA
65 AAGTTAAAGGGAAAAATCA
15987838 T
1 T
15987839 CTAACATGTT
Statistics
Matches: 82, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
83 8 0.10
84 74 0.90
ACGTcount: A:0.41, C:0.10, G:0.25, T:0.24
Consensus pattern (83 bp):
TTTTGATGAAAAAATGGAAGATAGGTGAAGTTGAGCCAAACAAATGAGCATGCATGTGCCTTAGA
AGTTAAAGGGAAAAATCA
Found at i:15989724 original size:39 final size:41
Alignment explanation
Indices: 15989629--15989812 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 41
15989619 TTGAATGCTG
*
15989629 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
*
15989668 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATA
15989708 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* *
15989747 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* *
15989787 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
15989813 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 9, Indels: 19
0.82 0.06 0.12
Matches are distributed among these distances:
39 54 0.43
40 61 0.48
41 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:15989764 original size:79 final size:81
Alignment explanation
Indices: 15989629--15989812 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
15989619 TTGAATGCTG
15989629 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
15989692 TGTGCGAGA-TACTA-A
66 TGTGCGA-ATTACTATA
* * **
15989707 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
15989768 ATTTGTGCGAATTACTATA
63 ATTTGTGCGAATTACTATA
* *
15989787 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
15989813 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 11 0.12
79 58 0.63
80 23 0.25
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
TGTGCGAATTACTATA
Found at i:15989834 original size:79 final size:79
Alignment explanation
Indices: 15989681--15989835 Score: 192
Period size: 79 Copynumber: 2.0 Consensus size: 79
15989671 GGACTAAGAT
* ** *
15989681 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
15989746 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
*
15989760 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
*
15989822 CTATATCC-GGTTAA
62 CTAAATCCGGGTTAA
15989836 ACTCTGAAGG
Statistics
Matches: 66, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
78 3 0.05
79 38 0.58
80 25 0.38
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAGTC
Found at i:15992537 original size:43 final size:43
Alignment explanation
Indices: 15992489--15992659 Score: 150
Period size: 43 Copynumber: 4.0 Consensus size: 43
15992479 AACTCGTACA
* * *
15992489 ATGCCAACATCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACATCCCAGACATGGTCTTACACGAAATCAAATATCG
** *
15992532 ATGCC-ACTATATCAGACAAGGTCTTACACGAAATCAAATA-CG
1 ATGCCAAC-ATCCCAGACATGGTCTTACACGAAATCAAATATCG
* ** * *
15992574 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCTCAA-ACCG
1 ATGCCAACATCCCAGACATGGTCTTACACG-AAATC-AAATATCG
* * ** *
15992618 ATGACAACATCCTAGATGTGGTCTTACACGAAATCATATATC
1 ATGCCAACATCCCAGACATGGTCTTACACGAAATCAAATATC
15992660 AGAATCCTAT
Statistics
Matches: 100, Mismatches: 22, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
42 28 0.28
43 45 0.45
44 27 0.27
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGCCAACATCCCAGACATGGTCTTACACGAAATCAAATATCG
Found at i:15994694 original size:95 final size:94
Alignment explanation
Indices: 15994553--15994782 Score: 343
Period size: 95 Copynumber: 2.4 Consensus size: 94
15994543 AAAAGGGTAA
* * * *
15994553 AATGCCGATGCCATGTCCCAGACATAGTCTCACACTGGCTCACATATTGAGGTCGATGCCATGTC
1 AATG-CGATGCCATGTTCCAAACATGGTCT-TCACTGGCTCACATATTGAGGTCGATGCCATGTC
* * *
15994618 CTAGACATGGTCTTACACTAGCTCTCATAAT
64 CCAGACATGGTCTTACACTAACTCTCATAAC
15994649 AATGTCGATGCCATGTTCCAAACATGGTCTTCACTGGCTCACATATTGAGGTCGATGCCATGTCC
1 AATG-CGATGCCATGTTCCAAACATGGTCTTCACTGGCTCACATATTGAGGTCGATGCCATGTCC
15994714 CAGACATGGTCTTACACTAACTCTCATAAC
65 CAGACATGGTCTTACACTAACTCTCATAAC
*
15994744 AATGCTGATCCCATGTTCCAAACATGGTCTTACACTGGC
1 AATGC-GATGCCATGTTCCAAACATGGTCTT-CACTGGC
15994783 CCCGTAATGT
Statistics
Matches: 123, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
94 1 0.01
95 89 0.72
96 33 0.27
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (94 bp):
AATGCGATGCCATGTTCCAAACATGGTCTTCACTGGCTCACATATTGAGGTCGATGCCATGTCCC
AGACATGGTCTTACACTAACTCTCATAAC
Found at i:15994721 original size:47 final size:48
Alignment explanation
Indices: 15994558--15994731 Score: 251
Period size: 48 Copynumber: 3.6 Consensus size: 48
15994548 GGTAAAATGC
* *
15994558 CGATGCCATGTCCCAGACATAGTCTCACACTGGCTCACATATTGAGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATTGAGGT
* * * * * *
15994606 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAATAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATTGAGGT
* *
15994654 CGATGCCATGTTCCAAACATGGTCTT-CACTGGCTCACATATTGAGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATTGAGGT
15994701 CGATGCCATGTCCCAGACATGGTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
15994732 AACTCTCATA
Statistics
Matches: 107, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
47 40 0.37
48 67 0.63
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATTGAGGT
Found at i:15994769 original size:48 final size:48
Alignment explanation
Indices: 15994553--15994779 Score: 226
Period size: 48 Copynumber: 4.8 Consensus size: 48
15994543 AAAAGGGTAA
* * * * * * * *
15994553 AATGCCGATGCCATGTCCCAGACATAGTCTCACACTGGCTCACATATT
1 AATGTCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATAAT
* * *
15994601 GAGGTCGATGCCATG-TCCTAGACATGGTCTTACACTAGCTCTCATAAT
1 AATGTCGATGCCATGTTCC-AAACATGGTCTTACACTAGCTCTCATAAT
* * *
15994649 AATGTCGATGCCATGTTCCAAACATGGTCTT-CACTGGCTCACATATT
1 AATGTCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATAAT
* * * * * *
15994696 GAGGTCGATGCCATGTCCCAGACATGGTCTTACACTAACTCTCATAAC
1 AATGTCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATAAT
*
15994744 AATG-CTGATCCCATGTTCCAAACATGGTCTTACACT
1 AATGTC-GATGCCATGTTCCAAACATGGTCTTACACT
15994780 GGCCCCGTAA
Statistics
Matches: 146, Mismatches: 29, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
47 43 0.29
48 100 0.68
49 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (48 bp):
AATGTCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATAAT
Found at i:15995286 original size:40 final size:40
Alignment explanation
Indices: 15995242--15995335 Score: 129
Period size: 39 Copynumber: 2.4 Consensus size: 40
15995232 ACTAGCACAA
* *
15995242 AGCCTGCGGGACTTTAGGCCCGGATATATTTCCAGCACGT
1 AGCCTGCGGGACCTCAGGCCCGGATATATTTCCAGCACGT
* * *
15995282 AGCCTAC-GGACCTCAGGTCCGGATATGTTTCCAGCACGT
1 AGCCTGCGGGACCTCAGGCCCGGATATATTTCCAGCACGT
15995321 AGCCTGC-GGACCTCA
1 AGCCTGCGGGACCTCA
15995336 TGTCTGGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 42 0.88
40 6 0.12
ACGTcount: A:0.20, C:0.31, G:0.27, T:0.22
Consensus pattern (40 bp):
AGCCTGCGGGACCTCAGGCCCGGATATATTTCCAGCACGT
Found at i:15995313 original size:39 final size:39
Alignment explanation
Indices: 15995261--15995349 Score: 142
Period size: 39 Copynumber: 2.3 Consensus size: 39
15995251 GACTTTAGGC
*
15995261 CCGGATATATTTCCAGCACGTAGCCTACGGACCTCAGGT
1 CCGGATATGTTTCCAGCACGTAGCCTACGGACCTCAGGT
* *
15995300 CCGGATATGTTTCCAGCACGTAGCCTGCGGACCTCATGT
1 CCGGATATGTTTCCAGCACGTAGCCTACGGACCTCAGGT
*
15995339 CTGGATATGTT
1 CCGGATATGTT
15995350 CCAAATATCG
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.20, C:0.28, G:0.25, T:0.27
Consensus pattern (39 bp):
CCGGATATGTTTCCAGCACGTAGCCTACGGACCTCAGGT
Found at i:16002998 original size:40 final size:40
Alignment explanation
Indices: 16002954--16003047 Score: 111
Period size: 39 Copynumber: 2.4 Consensus size: 40
16002944 ACTAGCACAA
** * *
16002954 AGCCTGCGGGAGTTTAGGCCCGGATATATATCCAGCACGT
1 AGCCTGCGGGACCTCAGGCCCAGATATATATCCAGCACGT
* * *
16002994 AGCCTGC-GGACCTCAGGTCCAGATATGTTTCCAGCACGT
1 AGCCTGCGGGACCTCAGGCCCAGATATATATCCAGCACGT
16003033 AGCCTGC-GGACCTCA
1 AGCCTGCGGGACCTCA
16003048 AGTCCGGATA
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 40 0.85
40 7 0.15
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (40 bp):
AGCCTGCGGGACCTCAGGCCCAGATATATATCCAGCACGT
Found at i:16003030 original size:39 final size:39
Alignment explanation
Indices: 16002984--16003061 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
16002974 CGGATATATA
*
16002984 TCCAGCACGTAGCCTGCGGACCTCAGGTCCAGATATGTT
1 TCCAGCACGTAGCCTGCGGACCTCAAGTCCAGATATGTT
*
16003023 TCCAGCACGTAGCCTGCGGACCTCAAGTCCGGATATGTT
1 TCCAGCACGTAGCCTGCGGACCTCAAGTCCAGATATGTT
16003062 CCAAATATCA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.21, C:0.31, G:0.26, T:0.23
Consensus pattern (39 bp):
TCCAGCACGTAGCCTGCGGACCTCAAGTCCAGATATGTT
Found at i:16006472 original size:28 final size:28
Alignment explanation
Indices: 16006440--16006504 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
16006430 ATGTACTAGA
16006440 ATACCCCTATGTATGAAAAATTACCATT
1 ATACCCCTATGTATGAAAAATTACCATT
* *
16006468 ATACCCCTATGTATGCAAAATTACCGTT
1 ATACCCCTATGTATGAAAAATTACCATT
16006496 ATACCCCTA
1 ATACCCCTA
16006505 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.35, C:0.26, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGAAAAATTACCATT
Found at i:16006651 original size:28 final size:27
Alignment explanation
Indices: 16006610--16006699 Score: 92
Period size: 28 Copynumber: 3.2 Consensus size: 27
16006600 AGGAAGCGTC
** *
16006610 CTGGTGGCTATGCCACAAATTATCTATT
1 CTGGTGGCCCTGCCACAAA-TATCTGTT
**
16006638 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCCCTGCCACAAATATCTGTT
16006665 CTGGTGGCACC-GCCACAAAATATCTGTAT
1 CTGGTGGC-CCTGCCAC-AAATATCTGT-T
16006694 CTGGTG
1 CTGGTG
16006700 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 20 0.38
28 25 0.48
29 7 0.13
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (27 bp):
CTGGTGGCCCTGCCACAAATATCTGTT
Found at i:16006668 original size:27 final size:28
Alignment explanation
Indices: 16006621--16006699 Score: 90
Period size: 27 Copynumber: 2.8 Consensus size: 28
16006611 TGGTGGCTAT
* *
16006621 GCCACAAATTATCTATTCTGGTGGC-CC
1 GCCACAAAATATCTGTTCTGGTGGCACC
**
16006648 TGCCAC-GTATATCTGTTCTGGTGGCACC
1 -GCCACAAAATATCTGTTCTGGTGGCACC
16006676 GCCACAAAATATCTGTATCTGGTG
1 GCCACAAAATATCTGT-TCTGGTG
16006700 ACTCTGTCAC
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
27 20 0.48
28 15 0.36
29 7 0.17
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.30
Consensus pattern (28 bp):
GCCACAAAATATCTGTTCTGGTGGCACC
Found at i:16007182 original size:18 final size:18
Alignment explanation
Indices: 16007143--16007183 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
16007133 TAATAAGGCC
* *
16007143 TTTTAATTATTTTTATGG
1 TTTTAATTACTTTTATGA
*
16007161 TTTTAATTACTTTTATTA
1 TTTTAATTACTTTTATGA
16007179 TTTTA
1 TTTTA
16007184 TTTTACTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTAATTACTTTTATGA
Found at i:16013783 original size:23 final size:25
Alignment explanation
Indices: 16013743--16013791 Score: 75
Period size: 23 Copynumber: 2.0 Consensus size: 25
16013733 AGATCCAAGG
*
16013743 TTTACCTCCTAGTTTTGGAATAAGT
1 TTTACCTCCTAGTTTTGGAAGAAGT
16013768 TTTACCT-C-AGTTTTGGAAGAAGT
1 TTTACCTCCTAGTTTTGGAAGAAGT
16013791 T
1 T
16013792 GCAAAAAGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 15 0.65
24 1 0.04
25 7 0.30
ACGTcount: A:0.24, C:0.14, G:0.18, T:0.43
Consensus pattern (25 bp):
TTTACCTCCTAGTTTTGGAAGAAGT
Found at i:16016108 original size:49 final size:49
Alignment explanation
Indices: 16015851--16016164 Score: 176
Period size: 46 Copynumber: 6.6 Consensus size: 49
16015841 TGTGCGCTAA
* * *
16015851 TGTAAGACATGTCTAGGACAT-GCATCAGCCACAG-T--ATGAGAGCCAG
1 TGTAAGACATGTCTGGGACATGGCATC-GACACTGATAGATGAGAGCCAG
* * * * *
16015897 TGTAAGACATGTCTGGGACAT-GCATTGGCATTG--AGACGAGAGCTAG
1 TGTAAGACATGTCTGGGACATGGCATCGACACTGATAGATGAGAGCCAG
* * * * *
16015943 TGTAAGACATGTCTGGGACAT-GCATCGGC-CTCACGATACA-CA-AACTAG
1 TGTAAGACATGTCTGGGACATGGCATCGACACT---GATAGATGAGAGCCAG
* * * * ** * *
16015991 TGTAAGGCCTGTCTGGGACATGGCAT-TA-GCTTTTAG-TG-TA-TCAG
1 TGTAAGACATGTCTGGGACATGGCATCGACACTGATAGATGAGAGCCAG
* *
16016035 CGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGCCAG
1 TGTAAGACATGTCTGGGACATGGCATCGACACTGATAGATGAGAGCCAG
* * * * *
16016084 TGTAAGACTTGTCTGGGACATGGCATCGGC-CTCGCTATATGAAAGCCAG
1 TGTAAGACATGTCTGGGACATGGCATCGACACT-GATAGATGAGAGCCAG
* * *
16016133 TGTTAGACCATGTCTGAGACATGGCGTCGACA
1 TGTAAGA-CATGTCTGGGACATGGCATCGACA
16016165 TCTTAACCCA
Statistics
Matches: 208, Mismatches: 41, Indels: 33
0.74 0.15 0.12
Matches are distributed among these distances:
44 26 0.12
45 9 0.04
46 66 0.32
47 2 0.01
48 30 0.14
49 54 0.26
50 21 0.10
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (49 bp):
TGTAAGACATGTCTGGGACATGGCATCGACACTGATAGATGAGAGCCAG
Found at i:16020324 original size:48 final size:48
Alignment explanation
Indices: 16020253--16020439 Score: 239
Period size: 48 Copynumber: 3.9 Consensus size: 48
16020243 AGGGTAAAAT
* * * * *
16020253 GCCGATGCCATGTCTCAGACATGGTCTTACATTGGCTCACATATTAAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAATAAG
* * * *
16020301 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAAT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAATAAG
* * * **
16020349 GCCGATGCCATGTTCCAAAAATGGTCTTACACTAGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAATAAG
*
16020397 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATA
16020440 TCACCCAATT
Statistics
Matches: 123, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 123 1.00
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAATAAG
Found at i:16020419 original size:96 final size:96
Alignment explanation
Indices: 16020250--16020439 Score: 265
Period size: 96 Copynumber: 2.0 Consensus size: 96
16020240 AAAAGGGTAA
* * * * *
16020250 AATGCCGATGCCATGTCTCAGACATGGTCTTACATTGGCTCACATATTAAGGCCGATGCCATGTC
1 AATGCCGATGCCATGTCTCAAAAATGGTCTTACACTAGCTCACATAATAAGGCCGATGCCATGTC
* *
16020315 CCAGACATGGTCTTACACTAGCTCTCATAAC
66 CCAAACATGGTCTTACACTAGCTCACATAAC
* **
16020346 AATGCCGATGCCATGT-TCCAAAAATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCCATGT
1 AATGCCGATGCCATGTCT-CAAAAATGGTCTTACACTAGCTCACATAATAAGGCCGATGCCATGT
*
16020410 TCCAAACATGGTCTTACACTAGCTCACATA
65 CCCAAACATGGTCTTACACTAGCTCACATA
16020440 TCACCCAATT
Statistics
Matches: 82, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
95 1 0.01
96 81 0.99
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (96 bp):
AATGCCGATGCCATGTCTCAAAAATGGTCTTACACTAGCTCACATAATAAGGCCGATGCCATGTC
CCAAACATGGTCTTACACTAGCTCACATAAC
Found at i:16020865 original size:24 final size:24
Alignment explanation
Indices: 16020812--16020857 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
16020802 GGTCAAACCC
16020812 GGATCAATCAAAGCAATAACTCCT
1 GGATCAATCAAAGCAATAACTCCT
16020836 GGATCAATCAAAGCAATAACTC
1 GGATCAATCAAAGCAATAACTC
16020858 TAGTATCATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.24, G:0.13, T:0.20
Consensus pattern (24 bp):
GGATCAATCAAAGCAATAACTCCT
Found at i:16023911 original size:55 final size:54
Alignment explanation
Indices: 16023791--16023976 Score: 195
Period size: 55 Copynumber: 3.4 Consensus size: 54
16023781 CTATGTCTCA
16023791 ACATGGTCTTACATG-GTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
1 ACATGGTCTTACATGAGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
* * * * *
16023844 GCATGGTCTTACATGAG-A-CCTTTGCCTTATAGAAATTTATCAATGCCATGTCTTG
1 ACATGGTCTTACATGAGTATCC-TTGCCTTAT-G-AACTCACCAATGCCATGCCTTG
* * *
16023899 ACATGGTCTTACATGA-TATCCTTGCATTA-GAAACCTTACCAATTGTCATGCCTTG
1 ACATGGTCTTACATGAGTATCCTTGCCTTATG-AA-CTCACCAA-TGCCATGCCTTG
*
16023954 GCATGGTCTTACATG-GTATCCTT
1 ACATGGTCTTACATGAGTATCCTT
16023977 AAACCCTAAT
Statistics
Matches: 112, Mismatches: 12, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
52 2 0.02
53 28 0.25
54 8 0.07
55 72 0.64
56 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (54 bp):
ACATGGTCTTACATGAGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
Found at i:16030443 original size:55 final size:53
Alignment explanation
Indices: 16030335--16030520 Score: 139
Period size: 55 Copynumber: 3.4 Consensus size: 53
16030325 ATTAGGGTTT
** * * *
16030335 AAGGATACCATGTAAGACCATG-CCAAGGCATGGAAATTGGTAATGTAT-TTAAGGC
1 AAGGATACCATGTAAGA-CATGTCCAAGAAATGG-CATTGATAA-GT-TCATAAGGC
* *
16030390 AAGGATATCATGTAAGATCATGT-CAAGAAATGGCATTGATAAGTTTTTATAAGGC
1 AAGGATACCATGTAAGA-CATGTCCAAGAAATGGCATTGATAAG--TTCATAAGGC
* ** * *
16030445 AAAGG-TCCCATGTAAGACTAT-TCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGAC-ATGTCCAAGAAATGGCATTGATAAGTTCATAAGGC
16030498 AAGGATACCATGTAAGACCATGT
1 AAGGATACCATGTAAGA-CATGT
16030521 AGAGACATGG
Statistics
Matches: 106, Mismatches: 15, Indels: 21
0.75 0.11 0.15
Matches are distributed among these distances:
52 4 0.04
53 23 0.22
54 12 0.11
55 63 0.59
56 4 0.04
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (53 bp):
AAGGATACCATGTAAGACATGTCCAAGAAATGGCATTGATAAGTTCATAAGGC
Found at i:16030541 original size:108 final size:110
Alignment explanation
Indices: 16030342--16030543 Score: 259
Period size: 108 Copynumber: 1.9 Consensus size: 110
16030332 TTTAAGGATA
* *
16030342 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAATGTATTTAAGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAATGTATATAAGGCAAGGATACCATGTAAGA
* **
16030407 TCATGTCAAGAAATGGCATTGATAAGTTTTTATAAGGCAAAGGTC
66 CCATGTCAAGAAATGGCAACGATAAGTTTTTATAAGGCAAAGGTC
* * * *
16030452 CCATGTAAGACTATTCCAAGGCATGG-CATTGGTGA-GT-TCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAATGTAT-ATAAGGCAAGGATACCATGTAAG
* *
16030514 ACCATGT-AGAGACATGGCAACGGTAAGTTT
65 ACCATGTCA-AGAAATGGCAACGATAAGTTT
16030544 CAAAAGGATA
Statistics
Matches: 79, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
107 2 0.03
108 46 0.58
109 7 0.09
110 24 0.30
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.26
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAATGTATATAAGGCAAGGATACCATGTAAGA
CCATGTCAAGAAATGGCAACGATAAGTTTTTATAAGGCAAAGGTC
Found at i:16069822 original size:24 final size:24
Alignment explanation
Indices: 16069789--16069859 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
16069779 CTGACAGTAG
16069789 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
*
16069813 TGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
16069837 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
16069860 GGAAATCTAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.34, C:0.01, G:0.38, T:0.27
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:16069871 original size:48 final size:48
Alignment explanation
Indices: 16069789--16069882 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
16069779 CTGACAGTAG
** * *
16069789 AGGATTTAGGAGTTGATAAGGGATTGGATTTAGGAGTTGAT-AAGGGAT
1 AGGATTTAGGAGCAGATAAGGGA-TGGATCTAGGAGCTGATCAAGGGAT
16069837 AGGATTTAGGAGCAGATAAGGGA-GGAAATCTAGGAGCTGATCAAGG
1 AGGATTTAGGAGCAGATAAGGGATGG--ATCTAGGAGCTGATCAAGG
16069883 AACAAGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
46 2 0.05
48 33 0.85
49 4 0.10
ACGTcount: A:0.34, C:0.04, G:0.37, T:0.24
Consensus pattern (48 bp):
AGGATTTAGGAGCAGATAAGGGATGGATCTAGGAGCTGATCAAGGGAT
Found at i:16071315 original size:27 final size:26
Alignment explanation
Indices: 16071277--16071388 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
16071267 AGGAAGTGTC
16071277 CTGGTGGCTCTGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
16071304 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* * * *
16071331 TTAGTAGCTCTGCGACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
16071359 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
16071385 CTGG
1 CTGG
16071389 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 13, Indels: 7
0.78 0.15 0.08
Matches are distributed among these distances:
26 7 0.10
27 49 0.71
28 13 0.19
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:16082229 original size:74 final size:74
Alignment explanation
Indices: 16082108--16082280 Score: 346
Period size: 74 Copynumber: 2.3 Consensus size: 74
16082098 CATAGCTCTG
16082108 ATACCAATTAAATTGTAACACCTCGTGTTCGACTCCGGCGACGGTCTCGGGTTCGAGGTGTTACA
1 ATACCAATTAAATTGTAACACCTCGTGTTCGACTCCGGCGACGGTCTCGGGTTCGAGGTGTTACA
16082173 ATTTAATTT
66 ATTTAATTT
16082182 ATACCAATTAAATTGTAACACCTCGTGTTCGACTCCGGCGACGGTCTCGGGTTCGAGGTGTTACA
1 ATACCAATTAAATTGTAACACCTCGTGTTCGACTCCGGCGACGGTCTCGGGTTCGAGGTGTTACA
16082247 ATTTAATTT
66 ATTTAATTT
16082256 ATACCAATTAAATTGTAACACCTCG
1 ATACCAATTAAATTGTAACACCTCG
16082281 AACCCGAGAC
Statistics
Matches: 99, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 99 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.32
Consensus pattern (74 bp):
ATACCAATTAAATTGTAACACCTCGTGTTCGACTCCGGCGACGGTCTCGGGTTCGAGGTGTTACA
ATTTAATTT
Found at i:16082313 original size:74 final size:74
Alignment explanation
Indices: 16082108--16082318 Score: 206
Period size: 74 Copynumber: 2.9 Consensus size: 74
16082098 CATAGCTCTG
**** * * ****
16082108 ATACCAATTAAATTGTAACACCTCGTGTTCGACTCCGGCGACGGTCTCGGGTTCGAGGTGTTACA
1 ATACCAATTAAATTGTAACACCTCGAACCCGACACCGGCGACGGACTCGAACACGAGGTGTTACA
16082173 ATTTAATTT
66 ATTTAATTT
**** * * ****
16082182 ATACCAATTAAATTGTAACACCTCGTGTTCGACTCCGGCGACGGTCTCGGGTTCGAGGTGTTACA
1 ATACCAATTAAATTGTAACACCTCGAACCCGACACCGGCGACGGACTCGAACACGAGGTGTTACA
16082247 ATTTAATTT
66 ATTTAATTT
* * * *
16082256 ATACCAATTAAATTGTAACACCTCGAACCCGAGACCGTCGCCGGAGTCGAACACGAGGTGTTA
1 ATACCAATTAAATTGTAACACCTCGAACCCGACACCGGCGACGGACTCGAACACGAGGTGTTA
16082319 ACAGACTTCA
Statistics
Matches: 123, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
74 123 1.00
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (74 bp):
ATACCAATTAAATTGTAACACCTCGAACCCGACACCGGCGACGGACTCGAACACGAGGTGTTACA
ATTTAATTT
Found at i:16086453 original size:24 final size:24
Alignment explanation
Indices: 16086420--16086490 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
16086410 CTGACAGTAG
16086420 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
*
16086444 TGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
16086468 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
16086491 GGAAATCTAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.34, C:0.01, G:0.38, T:0.27
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:16086502 original size:48 final size:48
Alignment explanation
Indices: 16086420--16086513 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
16086410 CTGACAGTAG
** * *
16086420 AGGATTTAGGAGTTGATAAGGGATTGGATTTAGGAGTTGAT-AAGGGAT
1 AGGATTTAGGAGCAGATAAGGGA-TGGATCTAGGAGCTGATCAAGGGAT
16086468 AGGATTTAGGAGCAGATAAGGGA-GGAAATCTAGGAGCTGATCAAGG
1 AGGATTTAGGAGCAGATAAGGGATGG--ATCTAGGAGCTGATCAAGG
16086514 AACAAGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
46 2 0.05
48 33 0.85
49 4 0.10
ACGTcount: A:0.34, C:0.04, G:0.37, T:0.24
Consensus pattern (48 bp):
AGGATTTAGGAGCAGATAAGGGATGGATCTAGGAGCTGATCAAGGGAT
Found at i:16087948 original size:27 final size:26
Alignment explanation
Indices: 16087908--16088020 Score: 118
Period size: 27 Copynumber: 4.2 Consensus size: 26
16087898 AGGAAGCGTC
* *
16087908 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCAC-ATTATCTGAT
* *
16087935 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGACTCTGCCACAT-TATCTGAT
* *
16087962 CTAGTGACACTGCCACGATTATCTGTAT
1 CTGGTGACTCTGCCAC-ATTATCTG-AT
* *
16087990 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGACTCTGCCACATTATCTGAT
16088016 CTGGT
1 CTGGT
16088021 AGCCATGCTA
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 8 0.11
27 49 0.67
28 16 0.22
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (26 bp):
CTGGTGACTCTGCCACATTATCTGAT
Found at i:16090338 original size:25 final size:25
Alignment explanation
Indices: 16090310--16090358 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
16090300 ACTCTTTATG
16090310 AGCGTCCTAATATAAGCTCTTCTTA
1 AGCGTCCTAATATAAGCTCTTCTTA
16090335 AGCGTCCTAATATAAGCTCTTCTT
1 AGCGTCCTAATATAAGCTCTTCTT
16090359 GACCTTCCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.37
Consensus pattern (25 bp):
AGCGTCCTAATATAAGCTCTTCTTA
Found at i:16090367 original size:25 final size:25
Alignment explanation
Indices: 16090312--16090372 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
16090302 TCTTTATGAG
*
16090312 CGTCCTAATATAAGCTCTTCTTAAG
1 CGTCCTAATATAAGCTCTTCTTAAC
*
16090337 CGTCCTAATATAAGCTCTTCTTGAC
1 CGTCCTAATATAAGCTCTTCTTAAC
* *
16090362 CTTCCTGATAT
1 CGTCCTAATAT
16090373 GGCTCACTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.25, C:0.26, G:0.11, T:0.38
Consensus pattern (25 bp):
CGTCCTAATATAAGCTCTTCTTAAC
Found at i:16094760 original size:20 final size:20
Alignment explanation
Indices: 16094723--16094761 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
16094713 AAAATATGTG
*
16094723 TATTTTGATGTTTAATGGTA
1 TATTTTGAAGTTTAATGGTA
16094743 TATTTTGCAAGTTT-ATGGT
1 TATTTTG-AAGTTTAATGGT
16094762 TAGAAAAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.23, C:0.03, G:0.21, T:0.54
Consensus pattern (20 bp):
TATTTTGAAGTTTAATGGTA
Found at i:16099048 original size:93 final size:93
Alignment explanation
Indices: 16098899--16099083 Score: 316
Period size: 93 Copynumber: 2.0 Consensus size: 93
16098889 TGATAGGTAA
* * *
16098899 ATTTTAAAGTGATCTATTAATGCATGATGTCAAAAAGGTGGACTTTCATGTCAAATTACCCATTT
1 ATTTTAAACTAATCTATTAATGCATGATGTCAAAAAGGTGGACTTGCATGTCAAATTACCCATTT
16098964 TTAGATAGTGGCCGACCATGATATTGAC
66 TTAGATAGTGGCCGACCATGATATTGAC
*
16098992 ATTTTAAACTAATCTTTTAATGCATGATGTCAAAAAGGTGGACTTGCATGTCAAATTACCCATTT
1 ATTTTAAACTAATCTATTAATGCATGATGTCAAAAAGGTGGACTTGCATGTCAAATTACCCATTT
* *
16099057 TTGGATAGTGGCCGGCCATGATATTGA
66 TTAGATAGTGGCCGACCATGATATTGA
16099084 TTAATATATA
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 86 1.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (93 bp):
ATTTTAAACTAATCTATTAATGCATGATGTCAAAAAGGTGGACTTGCATGTCAAATTACCCATTT
TTAGATAGTGGCCGACCATGATATTGAC
Found at i:16099975 original size:2 final size:2
Alignment explanation
Indices: 16099970--16099996 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
16099960 AATATATATA
16099970 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
16099997 ATACATGGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:16100786 original size:40 final size:40
Alignment explanation
Indices: 16100735--16100848 Score: 169
Period size: 40 Copynumber: 2.9 Consensus size: 40
16100725 TGATACTTGA
* *
16100735 GGAATGTTATCCGGGCTTAAAGACACGCAGGCT-TCGTGCT
1 GGAATGTTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCT
*
16100775 GGAACTG-TATCCGGGCTTAAAGACCCACAGGCTATATGCT
1 GGAA-TGTTATCCGGGCTTAAAGACCCGCAGGCTATATGCT
16100815 GGAATGTTATCCGGGCTTAAAGACCCGCAGGCTA
1 GGAATGTTATCCGGGCTTAAAGACCCGCAGGCTA
16100849 CGAGCTAGTA
Statistics
Matches: 67, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
39 2 0.03
40 62 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
GGAATGTTATCCGGGCTTAAAGACCCGCAGGCTATATGCT
Found at i:16103917 original size:33 final size:33
Alignment explanation
Indices: 16103880--16103945 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
16103870 TGTGAAAAAG
16103880 AAAGACGAAACCATGAGAATGTGCATTGACTAT
1 AAAGACGAAACCATGAGAATGTGCATTGACTAT
*
16103913 AAAGACGGAACCATGAGAATGTGCATTGACTAT
1 AAAGACGAAACCATGAGAATGTGCATTGACTAT
16103946 CGTCAATTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (33 bp):
AAAGACGAAACCATGAGAATGTGCATTGACTAT
Found at i:16130132 original size:37 final size:37
Alignment explanation
Indices: 16130073--16130215 Score: 232
Period size: 37 Copynumber: 3.9 Consensus size: 37
16130063 AGCTCAGACG
* *
16130073 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
16130110 AAATCTCCACACGTAGTCATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
16130147 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
16130184 TAATCTCCACACGTAGTCATTGGGTCTTACCC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCC
16130216 AGAATATATT
Statistics
Matches: 100, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:16130482 original size:100 final size:96
Alignment explanation
Indices: 16130364--16130549 Score: 284
Period size: 100 Copynumber: 1.9 Consensus size: 96
16130354 GCACATCGCC
* *
16130364 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCACA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT-T-TC-T-CATACATATTTCACA
16130429 TT-GACCATTCAGCTTTACCACATATGCATATCTCA
62 TTAG-CCATTCAGCTTTACCACATATGCATATCTCA
*
16130464 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTCATACATATTTCACATTAG
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATTTCTCATACATATTTCACATTAG
*
16130529 CCATTCGGCTTTACCACATAT
66 CCATTCAGCTTTACCACATAT
16130550 ATGCATGTTC
Statistics
Matches: 81, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
96 35 0.43
97 2 0.02
98 2 0.02
99 1 0.01
100 41 0.51
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (96 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATTTCTCATACATATTTCACATTAG
CCATTCAGCTTTACCACATATGCATATCTCA
Found at i:16130492 original size:48 final size:48
Alignment explanation
Indices: 16130364--16130550 Score: 277
Period size: 48 Copynumber: 3.8 Consensus size: 48
16130354 GCACATCGCC
*
16130364 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* * *
16130416 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
16130464 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
16130512 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
16130551 TGCATGTTCA
Statistics
Matches: 125, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
48 82 0.66
49 1 0.01
51 1 0.01
52 41 0.33
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:16130599 original size:47 final size:47
Alignment explanation
Indices: 16130520--16130713 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
16130510 CATACATATT
* * * *
16130520 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
16130567 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
16130614 TCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
16130661 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
16130708 TCACAT
1 TCACAT
16130714 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:16134967 original size:69 final size:70
Alignment explanation
Indices: 16134835--16134967 Score: 214
Period size: 69 Copynumber: 1.9 Consensus size: 70
16134825 TAGTTTATTA
* * * * *
16134835 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
16134900 CTTAG
66 CTTAG
16134905 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
16134968 GTTATGTGCT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 35 0.60
70 23 0.40
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:16136807 original size:48 final size:48
Alignment explanation
Indices: 16136736--16136975 Score: 390
Period size: 48 Copynumber: 5.0 Consensus size: 48
16136726 CACAAGATTA
16136736 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
16136784 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
16136832 GGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
* *
16136882 AGATATGTATATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * * *
16136930 AGATACGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAGTATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
16136976 GGAGGTGTGG
Statistics
Matches: 180, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
48 134 0.74
49 4 0.02
50 42 0.23
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:16136991 original size:98 final size:96
Alignment explanation
Indices: 16136736--16136975 Score: 390
Period size: 98 Copynumber: 2.5 Consensus size: 96
16136726 CACAAGATTA
16136736 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
16136801 AAAGCCGAATGGCTAATGTGAAATATGTATG
66 AAAGCCGAATGGCTAATGTGAAATATGTATG
* *
16136832 GGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTG
* *
16136897 GTAAAGCTGAATGGCTAGTGTGAAATATGTATG
64 GTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * * *
16136930 AGATACGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAGTATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
16136976 GGAGGTGTGG
Statistics
Matches: 132, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
96 41 0.31
97 4 0.03
98 87 0.66
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (96 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
AAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:16137161 original size:37 final size:37
Alignment explanation
Indices: 16137111--16137225 Score: 178
Period size: 37 Copynumber: 3.1 Consensus size: 37
16137101 ACATGAAACT
16137111 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
1 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
16137148 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
1 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
* * * *
16137185 TGGAGAT-TTTGTCCGGGTAAGACCCGATAACTTCGTG
1 TGGAAATATAT-TCCGGGTAAGACCCGATGACTACGTG
16137222 TGGA
1 TGGA
16137226 GATTTCGTCT
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
36 2 0.03
37 71 0.97
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (37 bp):
TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
Found at i:16142678 original size:23 final size:23
Alignment explanation
Indices: 16142652--16142701 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
16142642 AAACGTCAAC
* * *
16142652 AAAACAACAGTGAAATAACACCA
1 AAAACAACAATAAAATAACACAA
* *
16142675 AAAATAGCAATAAAATAACACAA
1 AAAACAACAATAAAATAACACAA
16142698 AAAA
1 AAAA
16142702 TAACCTGCAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.68, C:0.16, G:0.06, T:0.10
Consensus pattern (23 bp):
AAAACAACAATAAAATAACACAA
Found at i:16142701 original size:12 final size:12
Alignment explanation
Indices: 16142664--16142705 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
16142654 AACAACAGTG
*
16142664 AAATAACACCAA
1 AAATAACACAAA
* *
16142676 AAATAGCA-ATA
1 AAATAACACAAA
16142687 AAATAACACAAA
1 AAATAACACAAA
16142699 AAATAAC
1 AAATAAC
16142706 CTGCAAAATG
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
11 8 0.33
12 16 0.67
ACGTcount: A:0.69, C:0.17, G:0.02, T:0.12
Consensus pattern (12 bp):
AAATAACACAAA
Found at i:16142849 original size:3 final size:3
Alignment explanation
Indices: 16142841--16142875 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
16142831 CAATCAAAGA
*
16142841 ATC ATC ATC GTC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
16142876 TCTCTCAACC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.31, C:0.31, G:0.03, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:16149024 original size:29 final size:28
Alignment explanation
Indices: 16148983--16149038 Score: 94
Period size: 29 Copynumber: 2.0 Consensus size: 28
16148973 ATACTAAGAA
16148983 TAATAAAAATAGCTTCCATGCAAAATTT
1 TAATAAAAATAGCTTCCATGCAAAATTT
*
16149011 TAATAAAAAATAGCTTCTATGCAAAATT
1 TAAT-AAAAATAGCTTCCATGCAAAATT
16149039 CATTTAAACT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 4 0.15
29 22 0.85
ACGTcount: A:0.48, C:0.12, G:0.07, T:0.32
Consensus pattern (28 bp):
TAATAAAAATAGCTTCCATGCAAAATTT
Found at i:16151099 original size:37 final size:37
Alignment explanation
Indices: 16151049--16151127 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
16151039 TTATTACGAA
* * *
16151049 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
16151086 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
16151123 GTCTT
1 GTCTT
16151128 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:16151396 original size:47 final size:47
Alignment explanation
Indices: 16151246--16151671 Score: 665
Period size: 47 Copynumber: 9.1 Consensus size: 47
16151236 CCCTTCGGGA
* * * * * * * *
16151246 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
16151293 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
16151339 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
16151386 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
16151433 CTTATCACATATATACACCTTCACATTCATCACATCGGCTATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
16151480 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
16151527 TTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
16151574 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
16151621 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
16151668 CTTA
1 CTTA
16151672 CTATCATTTC
Statistics
Matches: 355, Mismatches: 23, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
46 40 0.11
47 315 0.89
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:16154428 original size:13 final size:13
Alignment explanation
Indices: 16154410--16154450 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
16154400 CTGGACTTCC
16154410 TCACACGGGCGTG
1 TCACACGGGCGTG
*
16154423 TCACACGAGCGTG
1 TCACACGGGCGTG
* *
16154436 TTACACGGTCGTG
1 TCACACGGGCGTG
16154449 TC
1 TC
16154451 CATTTGGTAG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.22
Consensus pattern (13 bp):
TCACACGGGCGTG
Found at i:16163698 original size:13 final size:13
Alignment explanation
Indices: 16163680--16163704 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16163670 AAGTAATCGC
16163680 ACACGGGCGTGTT
1 ACACGGGCGTGTT
16163693 ACACGGGCGTGT
1 ACACGGGCGTGT
16163705 CCTTACCGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.40, T:0.20
Consensus pattern (13 bp):
ACACGGGCGTGTT
Found at i:16169675 original size:55 final size:55
Alignment explanation
Indices: 16169615--16169736 Score: 165
Period size: 55 Copynumber: 2.2 Consensus size: 55
16169605 TGAGTTATTG
* *
16169615 TTGTACACGGGCAGGCCACACAGGCATGTG-CGATGGCCGTGTATTAAAGTCAGTA
1 TTGTACACGGGCAAGCCACACAGGCATGCGTC-ATGGCCGTGTATTAAAGTCAGTA
* * * *
16169670 TTGTACACAGGCAAGCCACACGGGCATGCGTCATGGCCGTGTTTTAAAGTCAGTG
1 TTGTACACGGGCAAGCCACACAGGCATGCGTCATGGCCGTGTATTAAAGTCAGTA
*
16169725 TTGCACACGGGC
1 TTGTACACGGGC
16169737 TAAGGACATG
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
55 57 0.98
56 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.30, T:0.22
Consensus pattern (55 bp):
TTGTACACGGGCAAGCCACACAGGCATGCGTCATGGCCGTGTATTAAAGTCAGTA
Found at i:16177818 original size:20 final size:21
Alignment explanation
Indices: 16177790--16177828 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
16177780 GTTACATCTC
16177790 ACGAACTCGG-ACTCAAATCA
1 ACGAACTCGGAACTCAAATCA
*
16177810 ACGAGCTCGGAACTCAAAT
1 ACGAACTCGGAACTCAAAT
16177829 ATCCTAGTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.38, C:0.28, G:0.18, T:0.15
Consensus pattern (21 bp):
ACGAACTCGGAACTCAAATCA
Found at i:16180202 original size:30 final size:30
Alignment explanation
Indices: 16180163--16180223 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 30
16180153 GGCATTGCCC
16180163 CTTCAGCAGGAGCT-G-GCGATTACTCTCTA
1 CTTCAGCAGGAGCTAGTGC-ATTACTCTCTA
*
16180192 CTTNCAGCAGGAGCTAGTGCATTGCTCTCTA
1 CTT-CAGCAGGAGCTAGTGCATTACTCTCTA
16180223 C
1 C
16180224 ATCATCAGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 3 0.11
30 11 0.39
31 12 0.43
32 2 0.07
ACGTcount: A:0.20, C:0.28, G:0.23, T:0.28
Consensus pattern (30 bp):
CTTCAGCAGGAGCTAGTGCATTACTCTCTA
Found at i:16182524 original size:57 final size:57
Alignment explanation
Indices: 16182436--16182548 Score: 208
Period size: 57 Copynumber: 2.0 Consensus size: 57
16182426 ACATTAAAAA
16182436 CGGGGATTGGAATCACTTACTATGGAGCTTGGAAGCTTGAAACAAAACCTAGCTATT
1 CGGGGATTGGAATCACTTACTATGGAGCTTGGAAGCTTGAAACAAAACCTAGCTATT
* *
16182493 CGGGGCTTGGAATCACTTACTATGGAGCTTGGAAGCTTGAAACAAACCCTAGCTAT
1 CGGGGATTGGAATCACTTACTATGGAGCTTGGAAGCTTGAAACAAAACCTAGCTAT
16182549 GGAGAACCCT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (57 bp):
CGGGGATTGGAATCACTTACTATGGAGCTTGGAAGCTTGAAACAAAACCTAGCTATT
Found at i:16189256 original size:93 final size:93
Alignment explanation
Indices: 16189141--16189311 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
16189131 GTCCATAAGT
* * *
16189141 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAG
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
16189206 TGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
16189234 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
16189299 CGAGTTCGGATGC
66 CGAGTTCGGATGC
16189312 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:16189308 original size:46 final size:46
Alignment explanation
Indices: 16189132--16189308 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
16189122 ATATAACCCG
* * *
16189132 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCA
** *
16189178 TCCATAAGTGAACTCGGACTCAACTCAGTGAGTTCGGATGCCTAGTT-ACA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCA
* * *
16189228 T--TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCA
16189271 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
16189309 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 63 0.59
47 27 0.25
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCA
Found at i:16217514 original size:26 final size:26
Alignment explanation
Indices: 16217475--16217535 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
16217465 CATATTGCTT
*
16217475 TTATGTTGTATTAGGAGATTCAGTGA
1 TTATGTTGTATTAGGAAATTCAGTGA
* *
16217501 TTATGTTGTCTTAGGAAATTTAGTGA
1 TTATGTTGTATTAGGAAATTCAGTGA
16217527 TTATGTTGT
1 TTATGTTGT
16217536 GTAAGTAGTC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.25, C:0.03, G:0.25, T:0.48
Consensus pattern (26 bp):
TTATGTTGTATTAGGAAATTCAGTGA
Found at i:16221358 original size:105 final size:105
Alignment explanation
Indices: 16221176--16221555 Score: 733
Period size: 105 Copynumber: 3.6 Consensus size: 105
16221166 AATTACAATA
* * *
16221176 TTCATCTCAAAGGTGCTGCTAATCTCAAAACAGCCCCAAAACTGGAAATTATCACAAAGCACAGT
1 TTCATCTCAAAGATGCTGCTAACCTCTAAACAGCCCCAAAACTGGAAATTATCACAAAGCACAGT
16221241 GTTCTGCCTTTATTATCTATATGTTTTACATGCTTTGACC
66 GTTCTGCCTTTATTATCTATATGTTTTACATGCTTTGACC
16221281 TTCATCTCAAAGATGCTGCTAACCTCTAAACAGCCCCAAAACTGGAAATTATCACAAAGCACAGT
1 TTCATCTCAAAGATGCTGCTAACCTCTAAACAGCCCCAAAACTGGAAATTATCACAAAGCACAGT
16221346 GTTCTGCCTTTATTATCTATATGTTTTACATGCTTTGACC
66 GTTCTGCCTTTATTATCTATATGTTTTACATGCTTTGACC
16221386 TTCATCTCAAAGATGCTGCTAACCTCTAAACAGCCCCAAAACTGGAAATTATCACAAAGCACAGT
1 TTCATCTCAAAGATGCTGCTAACCTCTAAACAGCCCCAAAACTGGAAATTATCACAAAGCACAGT
16221451 GTTCTGCCTTTATTATCTATATGTTTTACATGCTTTGACC
66 GTTCTGCCTTTATTATCTATATGTTTTACATGCTTTGACC
16221491 TTCATCTCAAAGATGCTGCTAACCTCTAAACAGCCCCAAAACTGGAAATTATCACAAAGCACAGT
1 TTCATCTCAAAGATGCTGCTAACCTCTAAACAGCCCCAAAACTGGAAATTATCACAAAGCACAGT
16221556 ATTAGGCTTT
Statistics
Matches: 272, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
105 272 1.00
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.31
Consensus pattern (105 bp):
TTCATCTCAAAGATGCTGCTAACCTCTAAACAGCCCCAAAACTGGAAATTATCACAAAGCACAGT
GTTCTGCCTTTATTATCTATATGTTTTACATGCTTTGACC
Found at i:16232544 original size:41 final size:41
Alignment explanation
Indices: 16232487--16232567 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
16232477 GGCTGAGATT
16232487 CCAAATCTTAAGAGATTGGA-AGAGGGTAGGGGACATATTCG
1 CCAAATCTTAAGAGATT-GATAGAGGGTAGGGGACATATTCG
*
16232528 CCAAATCTTAAGAGATTGATAGAGTGTAGGGGACATATTC
1 CCAAATCTTAAGAGATTGATAGAGGGTAGGGGACATATTC
16232568 TACATCTTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
40 2 0.05
41 36 0.95
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.25
Consensus pattern (41 bp):
CCAAATCTTAAGAGATTGATAGAGGGTAGGGGACATATTCG
Found at i:16245782 original size:29 final size:28
Alignment explanation
Indices: 16245746--16245823 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
16245736 TCATGAGATT
16245746 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
16245776 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
16245803 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
16245824 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:16246041 original size:174 final size:174
Alignment explanation
Indices: 16245776--16246799 Score: 1985
Period size: 174 Copynumber: 5.9 Consensus size: 174
16245766 AAATTGTACA
* *
16245776 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
16245841 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
16245906 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
16245950 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
16246015 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
16246080 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
16246124 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
16246189 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
16246254 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
16246298 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
16246363 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
16246428 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
16246472 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
16246537 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
16246602 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
16246646 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
16246711 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
16246776 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
16246800 ACCTTGAGTT
Statistics
Matches: 840, Mismatches: 10, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
174 840 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:16254571 original size:28 final size:27
Alignment explanation
Indices: 16254514--16254665 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
16254504 TAAATTGTGC
*
16254514 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
16254541 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
16254569 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
16254596 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
16254624 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
16254651 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
16254666 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:16254578 original size:55 final size:55
Alignment explanation
Indices: 16254514--16254665 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
16254504 TAAATTGTGC
*
16254514 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
16254569 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
16254624 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
16254666 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:16259027 original size:11 final size:11
Alignment explanation
Indices: 16259005--16259047 Score: 52
Period size: 10 Copynumber: 3.7 Consensus size: 11
16258995 GAAGAAGAGG
16259005 AAATTCGAAAAA
1 AAATT-GAAAAA
16259017 AAATTGAAAAAAA
1 AAATTG--AAAAA
16259030 AAATT-AAAAA
1 AAATTGAAAAA
16259040 AAATTGAA
1 AAATTGAA
16259048 GTATATAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
10 10 0.36
11 3 0.11
12 5 0.18
13 10 0.36
ACGTcount: A:0.72, C:0.02, G:0.07, T:0.19
Consensus pattern (11 bp):
AAATTGAAAAA
Done.