Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 71 of 235
Found at i:24378324 original size:29 final size:28
Alignment explanation
Indices: 24378267--24378352 Score: 118
Period size: 28 Copynumber: 3.0 Consensus size: 28
24378257 TACCTGTATC
* *
24378267 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
24378295 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
24378324 TGACCCGTTAGGCCCAATCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
24378352 T
1 T
24378353 TCATGCTCAC
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
28 27 0.53
29 24 0.47
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:24378432 original size:17 final size:18
Alignment explanation
Indices: 24378410--24378456 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
24378400 TTACCTATTA
24378410 TGGGCCCA-ATAGCCCAT
1 TGGGCCCATATAGCCCAT
*
24378427 TGGGCCCATTTAGCCCAT
1 TGGGCCCATATAGCCCAT
*
24378445 TCCGGCCCATAT
1 T-GGGCCCATAT
24378457 GGCTAAATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 8 0.32
18 9 0.36
19 8 0.32
ACGTcount: A:0.19, C:0.36, G:0.21, T:0.23
Consensus pattern (18 bp):
TGGGCCCATATAGCCCAT
Found at i:24378589 original size:16 final size:16
Alignment explanation
Indices: 24378568--24378607 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
24378558 CAAACTTTTG
24378568 GCTTTTCGGCATTTCA
1 GCTTTTCGGCATTTCA
*
24378584 GCTTTTCGGCTTTTCA
1 GCTTTTCGGCATTTCA
*
24378600 GCATTTCG
1 GCTTTTCG
24378608 ACTTTTGCTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.10, C:0.25, G:0.20, T:0.45
Consensus pattern (16 bp):
GCTTTTCGGCATTTCA
Found at i:24378595 original size:24 final size:23
Alignment explanation
Indices: 24378562--24378614 Score: 72
Period size: 24 Copynumber: 2.3 Consensus size: 23
24378552 CGTAGCCAAA
*
24378562 CTTTTGGCTTTTCGGCATTTCAG
1 CTTTTGGCTTTTCAGCATTTCAG
24378585 CTTTTCGGCTTTTCAGCATTTC-G
1 CTTTT-GGCTTTTCAGCATTTCAG
24378608 ACTTTTG
1 -CTTTTG
24378615 CTGATACATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 7 0.26
24 20 0.74
ACGTcount: A:0.09, C:0.23, G:0.19, T:0.49
Consensus pattern (23 bp):
CTTTTGGCTTTTCAGCATTTCAG
Found at i:24378612 original size:16 final size:16
Alignment explanation
Indices: 24378579--24378613 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
24378569 CTTTTCGGCA
* *
24378579 TTTCAGCTTTTCGGCT
1 TTTCAGCATTTCGACT
24378595 TTTCAGCATTTCGACT
1 TTTCAGCATTTCGACT
24378611 TTT
1 TTT
24378614 GCTGATACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.11, C:0.23, G:0.14, T:0.51
Consensus pattern (16 bp):
TTTCAGCATTTCGACT
Found at i:24379216 original size:30 final size:30
Alignment explanation
Indices: 24379182--24379242 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
24379172 GAAGAAGAGT
*
24379182 AGAAGAAGAAATCGGCTAAGTGAAACAAAG
1 AGAAGAAGAAATCGACTAAGTGAAACAAAG
24379212 AGAAGAAGAAATCGACTAAGTGAAACAAAG
1 AGAAGAAGAAATCGACTAAGTGAAACAAAG
24379242 A
1 A
24379243 AAACTGTACA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.56, C:0.10, G:0.25, T:0.10
Consensus pattern (30 bp):
AGAAGAAGAAATCGACTAAGTGAAACAAAG
Found at i:24382584 original size:41 final size:41
Alignment explanation
Indices: 24382527--24382705 Score: 272
Period size: 41 Copynumber: 4.3 Consensus size: 41
24382517 ACATAAAATT
*
24382527 TGCTAGGC-ATAAAGCCT-AGTATAATACACCGGCACAGAGCC
1 TGCTAGGCAAT-AAGCCTGA-TATAATACACCGGCACAAAGCC
*
24382568 TGCTAGGCAATAAGCCTGATATAATACACCGGCATATAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGC--ACAAAGCC
*
24382611 TGCTAGGCAATAAGCCTGATATAATACGCCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
24382652 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
*
24382693 TGCAAGGCAATAA
1 TGCTAGGCAATAA
24382706 AGCCCGAATA
Statistics
Matches: 128, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
41 87 0.68
42 3 0.02
43 38 0.30
ACGTcount: A:0.36, C:0.25, G:0.21, T:0.18
Consensus pattern (41 bp):
TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
Found at i:24382660 original size:84 final size:82
Alignment explanation
Indices: 24382527--24382705 Score: 272
Period size: 84 Copynumber: 2.2 Consensus size: 82
24382517 ACATAAAATT
*
24382527 TGCTAGGC-ATAAAGCCTAGTATAATACACCGGCACAGAGCCTGCTAGGCAATAAGCCTGATATA
1 TGCTAGGCAAT-AAGCCTAGTATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATA
*
24382591 ATACACCGGCATATAAAGCC
65 ATACACCGGC--ACAAAGCC
*
24382611 TGCTAGGCAATAAGCCT-GATATAATACGCCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATA
1 TGCTAGGCAATAAGCCTAG-TATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATA
24382675 ATACACCGGCACAAAGCC
65 ATACACCGGCACAAAGCC
*
24382693 TGCAAGGCAATAA
1 TGCTAGGCAATAA
24382706 AGCCCGAATA
Statistics
Matches: 89, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
82 19 0.21
83 1 0.01
84 67 0.75
85 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.21, T:0.18
Consensus pattern (82 bp):
TGCTAGGCAATAAGCCTAGTATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATAA
TACACCGGCACAAAGCC
Found at i:24383883 original size:392 final size:392
Alignment explanation
Indices: 24383159--24383941 Score: 1503
Period size: 392 Copynumber: 2.0 Consensus size: 392
24383149 AGTCCCTATT
24383159 TCAAAATAACACAAATTACTCAAAATTTCATCAAACCCATGTTAGGCCGAATTTATCTTAGGTCT
1 TCAAAATAACACAAATTACTCAAAATTTCATCAAACCCATGTTAGGCCGAATTTATCTTAGGTCT
24383224 CCAGCAACCCATTTCTTTTATTTATTTCACGTTTTGACCCCTCAATTTACAAATTTCTAAATTTA
66 CCAGCAACCCATTTCTTTTATTTATTTCACGTTTTGACCCCTCAATTTACAAATTTCTAAATTTA
24383289 GTCCTCAATACACATTTTTATCAAAAATCACTTAATTAAACATGAAAATCAAACATCAAAGATTT
131 GTCCTCAATACACATTTTTATCAAAAATCACTTAATTAAACATGAAAATCAAACATCAAAGATTT
24383354 ATTATTCATCATCAAACAACAATTTCATCACATAATAAACAATGGAAAAACTCAAATTCTTCATT
196 ATTATTCATCATCAAACAACAATTTCATCACATAATAAACAATGGAAAAACTCAAATTCTTCATT
24383419 AAATCCAAAAATTAAGGCATGGGTTTACTAGTACTCGAAGCAACGATCTCAAAAACGTAAAAATT
261 AAATCCAAAAATTAAGGCATGGGTTTACTAGTACTCGAAGCAACGATCTCAAAAACGTAAAAATT
24383484 ATCAAAAACCGAGTAAAACACATACCCAAATTAAGCTTCCAAAGGTGCCAAATATTCAAAGCTTC
326 ATCAAAAACCGAGTAAAACACATACCCAAATTAAGCTTCCAAAGGTGCCAAATATTCAAAGCTTC
24383549 CA
391 CA
24383551 TCAAAATAACACAAATTACTCAAAATTTCATCAAACCCATGTTAGGCCGAATTTATCTTAGGTCT
1 TCAAAATAACACAAATTACTCAAAATTTCATCAAACCCATGTTAGGCCGAATTTATCTTAGGTCT
** *
24383616 TTAGCAACCCATTTCTTTTATTTATTTCACGTTTTGACCCCTCGATTTACAAATTTCTAAATTTA
66 CCAGCAACCCATTTCTTTTATTTATTTCACGTTTTGACCCCTCAATTTACAAATTTCTAAATTTA
* *
24383681 TTCCTTAATACACATTTTTATCAAAAATCACTTAATTAAACATGAAAATCAAACATCAAAGATTT
131 GTCCTCAATACACATTTTTATCAAAAATCACTTAATTAAACATGAAAATCAAACATCAAAGATTT
*
24383746 ATTATTCATCATCAAACAACAATTTCATCACATAATAAACAATGGAAAATCTCAAATTCTTCATT
196 ATTATTCATCATCAAACAACAATTTCATCACATAATAAACAATGGAAAAACTCAAATTCTTCATT
24383811 AAATCCAAAAATTAAGGCATGGGTTTACTAGTACTCGAAGCAACGATCTCAAAAACGTAAAAATT
261 AAATCCAAAAATTAAGGCATGGGTTTACTAGTACTCGAAGCAACGATCTCAAAAACGTAAAAATT
*
24383876 ATCAAAAACCGAGTAAAACACATACCCGAATTAAGCTTCCAAAGGTGCCAAATATTCAAAGCTTC
326 ATCAAAAACCGAGTAAAACACATACCCAAATTAAGCTTCCAAAGGTGCCAAATATTCAAAGCTTC
24383941 C
391 C
24383942 GAACTCATCT
Statistics
Matches: 384, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
392 384 1.00
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (392 bp):
TCAAAATAACACAAATTACTCAAAATTTCATCAAACCCATGTTAGGCCGAATTTATCTTAGGTCT
CCAGCAACCCATTTCTTTTATTTATTTCACGTTTTGACCCCTCAATTTACAAATTTCTAAATTTA
GTCCTCAATACACATTTTTATCAAAAATCACTTAATTAAACATGAAAATCAAACATCAAAGATTT
ATTATTCATCATCAAACAACAATTTCATCACATAATAAACAATGGAAAAACTCAAATTCTTCATT
AAATCCAAAAATTAAGGCATGGGTTTACTAGTACTCGAAGCAACGATCTCAAAAACGTAAAAATT
ATCAAAAACCGAGTAAAACACATACCCAAATTAAGCTTCCAAAGGTGCCAAATATTCAAAGCTTC
CA
Found at i:24387285 original size:135 final size:136
Alignment explanation
Indices: 24387037--24387312 Score: 545
Period size: 135 Copynumber: 2.0 Consensus size: 136
24387027 CTTTACCCGT
24387037 TGAACACATCGGAATATAATTCGGATACATGGAAAGTTTGCACATAAGTGCCACATATGTAGCCA
1 TGAACACATCGGAATATAATTCGGATACATGGAAAGTTTGCACATAAGTGCCACATATGTAGCCA
24387102 AGCTACTATGTAACCCGCCCATAACCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATC
66 AGCTACTATGTAACCCGCCCATAACCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATC
24387167 CATGAG
131 CATGAG
24387173 TGAAC-CATCGGAATATAATTCGGATACATGGAAAGTTTGCACATAAGTGCCACATATGTAGCCA
1 TGAACACATCGGAATATAATTCGGATACATGGAAAGTTTGCACATAAGTGCCACATATGTAGCCA
24387237 AGCTACTATGTAACCCGCCCATAACCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATC
66 AGCTACTATGTAACCCGCCCATAACCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATC
24387302 CATGAG
131 CATGAG
24387308 TGAAC
1 TGAAC
24387313 TCGGACTCAA
Statistics
Matches: 140, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
135 135 0.96
136 5 0.04
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.21
Consensus pattern (136 bp):
TGAACACATCGGAATATAATTCGGATACATGGAAAGTTTGCACATAAGTGCCACATATGTAGCCA
AGCTACTATGTAACCCGCCCATAACCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATC
CATGAG
Found at i:24389736 original size:48 final size:48
Alignment explanation
Indices: 24389684--24389831 Score: 194
Period size: 48 Copynumber: 3.1 Consensus size: 48
24389674 CTAACTTGTC
* * *
24389684 TATCTCGAGGCCAATCCATGTCCCAGACATGTCTTACACTGGCTTAAA
1 TATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACA
* *
24389732 TATCTCGAGGCCGATGTATGTCCCAGACATATCTTACACTGGCTCT-CA
1 TATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACA
* * *
24389780 TAT-T-GTGGCCGATGCATGTCCCAGACATGTCTTACACTAGCATACA
1 TATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACA
24389826 TATCTC
1 TATCTC
24389832 CCAATATCAA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
45 1 0.01
46 38 0.44
47 2 0.02
48 44 0.51
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (48 bp):
TATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACA
Found at i:24402897 original size:43 final size:46
Alignment explanation
Indices: 24402832--24402947 Score: 159
Period size: 46 Copynumber: 2.6 Consensus size: 46
24402822 CTTGAGGTCG
*
24402832 ATGCATGTCCCAAACATGTCTTACACTGGCT-T-A-ATCGA-GGCCA
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATC-ATGGCCA
* **
24402875 ATGCATGTCCCAGACATTTCTTACACTGGCTCTCATATCATGGCTG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATCATGGCCA
24402921 ATGCATGTCCCAGACATGTCTTACACT
1 ATGCATGTCCCAGACATGTCTTACACT
24402948 AGCACACATA
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
43 29 0.45
44 1 0.02
45 2 0.03
46 32 0.50
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.29
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATCATGGCCA
Found at i:24402933 original size:46 final size:43
Alignment explanation
Indices: 24402825--24402947 Score: 158
Period size: 43 Copynumber: 2.8 Consensus size: 43
24402815 GTTCTATCTT
* *
24402825 GAGGTCGATGCATGTCCCAAACATGTCTTACACTGGCTTAATC
1 GAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTAATC
* *
24402868 GAGGCCAATGCATGTCCCAGACATTTCTTACACTGGCTCTCATATC
1 GAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCT-T-A-ATC
*
24402914 -ATGGCTGATGCATGTCCCAGACATGTCTTACACT
1 GA-GGCCGATGCATGTCCCAGACATGTCTTACACT
24402948 AGCACACATA
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
43 34 0.49
44 1 0.01
45 2 0.03
46 32 0.46
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (43 bp):
GAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTAATC
Found at i:24404398 original size:10 final size:10
Alignment explanation
Indices: 24404383--24404429 Score: 58
Period size: 10 Copynumber: 4.4 Consensus size: 10
24404373 GCTTATAATC
24404383 CATACCAAAT
1 CATACCAAAT
24404393 CATACCAAAT
1 CATACCAAAT
24404403 CATAAGCCAAAGT
1 CAT-A-CCAAA-T
*
24404416 CATACCAAAA
1 CATACCAAAT
24404426 CATA
1 CATA
24404430 TGTTTCATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
10 17 0.52
11 6 0.18
12 6 0.18
13 4 0.12
ACGTcount: A:0.51, C:0.28, G:0.04, T:0.17
Consensus pattern (10 bp):
CATACCAAAT
Found at i:24404419 original size:23 final size:22
Alignment explanation
Indices: 24404387--24404429 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
24404377 ATAATCCATA
*
24404387 CCAAATCATACCAAATCATAAG
1 CCAAATCATACCAAAACATAAG
24404409 CCAAAGTCATACCAAAACATA
1 CCAAA-TCATACCAAAACATA
24404430 TGTTTCATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.51, C:0.28, G:0.05, T:0.16
Consensus pattern (22 bp):
CCAAATCATACCAAAACATAAG
Found at i:24407561 original size:25 final size:27
Alignment explanation
Indices: 24407524--24407576 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
24407514 TCAAACATGC
24407524 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
24407550 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
24407576 A
1 A
24407577 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:24415802 original size:8 final size:8
Alignment explanation
Indices: 24415789--24415818 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
24415779 AAATACCAGT
24415789 TTTCGGCA
1 TTTCGGCA
24415797 TTTCGGCA
1 TTTCGGCA
*
24415805 TTTCGGCT
1 TTTCGGCA
24415813 TTTCGG
1 TTTCGG
24415819 TTTTTACCGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.07, C:0.23, G:0.27, T:0.43
Consensus pattern (8 bp):
TTTCGGCA
Found at i:24422972 original size:25 final size:27
Alignment explanation
Indices: 24422935--24422987 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
24422925 TCAAACATGC
24422935 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
24422961 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
24422987 A
1 A
24422988 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:24428855 original size:8 final size:7
Alignment explanation
Indices: 24428827--24428853 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
24428817 CATGTATTAT
24428827 TTTTTTA
1 TTTTTTA
24428834 TTTTTTA
1 TTTTTTA
24428841 TTTTTTA
1 TTTTTTA
24428848 TTTTTT
1 TTTTTT
24428854 TAAGAACAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (7 bp):
TTTTTTA
Found at i:24438269 original size:22 final size:22
Alignment explanation
Indices: 24438241--24438294 Score: 81
Period size: 24 Copynumber: 2.4 Consensus size: 22
24438231 TGTTACTGGA
24438241 AGCTTACTGTTCAGCTCAATAG
1 AGCTTACTGTTCAGCTCAATAG
*
24438263 AGCTTACCGTTTTCAGCTCAATAG
1 AGCTTA-C-TGTTCAGCTCAATAG
24438287 AGCTTACT
1 AGCTTACT
24438295 ATTTATCAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 7 0.24
23 2 0.07
24 20 0.69
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (22 bp):
AGCTTACTGTTCAGCTCAATAG
Found at i:24454007 original size:12 final size:12
Alignment explanation
Indices: 24453971--24454030 Score: 52
Period size: 12 Copynumber: 5.0 Consensus size: 12
24453961 AATTCCGCAT
*
24453971 ACATAGTGCCAT
1 ACATAGTGCCAC
*
24453983 ACATA-TACGCAC
1 ACATAGTGC-CAC
24453995 ACATAGTGCCAC
1 ACATAGTGCCAC
* *
24454007 ACA-AATACGCAC
1 ACATAGTGC-CAC
24454019 ACATAGTGCCAC
1 ACATAGTGCCAC
24454031 TCAAATCCGC
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
11 5 0.14
12 27 0.73
13 5 0.14
ACGTcount: A:0.38, C:0.32, G:0.13, T:0.17
Consensus pattern (12 bp):
ACATAGTGCCAC
Found at i:24454049 original size:24 final size:24
Alignment explanation
Indices: 24453942--24454041 Score: 119
Period size: 24 Copynumber: 4.2 Consensus size: 24
24453932 GATTCAACTC
* * * *
24453942 CGCACACATAGTGCCAAATAATTC
1 CGCACACATAGTGCCACACAAATA
* * *
24453966 CGCATACATAGTGCCATACATATA
1 CGCACACATAGTGCCACACAAATA
24453990 CGCACACATAGTGCCACACAAATA
1 CGCACACATAGTGCCACACAAATA
* *
24454014 CGCACACATAGTGCCACTCAAATC
1 CGCACACATAGTGCCACACAAATA
24454038 CGCA
1 CGCA
24454042 TATCTAGTAC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 65 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (24 bp):
CGCACACATAGTGCCACACAAATA
Found at i:24463859 original size:12 final size:13
Alignment explanation
Indices: 24463844--24463873 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
24463834 TGAAACTTTC
24463844 ACACATACT-TAA
1 ACACATACTGTAA
24463856 ACACATACTGTAA
1 ACACATACTGTAA
24463869 ACACA
1 ACACA
24463874 AAAAATAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.53
13 8 0.47
ACGTcount: A:0.50, C:0.27, G:0.03, T:0.20
Consensus pattern (13 bp):
ACACATACTGTAA
Found at i:24483454 original size:29 final size:29
Alignment explanation
Indices: 24483415--24483493 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
24483405 CTTAATAATC
*
24483415 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
24483445 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
24483474 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
24483494 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:24485877 original size:43 final size:43
Alignment explanation
Indices: 24485827--24485912 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
24485817 GAGATATGTC
*
24485827 GCATCCGAGCTCGTTGAGTGGTCTGAATTCATTATGGATGCGA
1 GCATCCGAGCTCGTTGAGTGGTCCGAATTCATTATGGATGCGA
* *
24485870 GCATCCGAGCTCGTTGAGTGGTCCGAGTTCATTGTGGATGCGA
1 GCATCCGAGCTCGTTGAGTGGTCCGAATTCATTATGGATGCGA
24485913 TACCTATGAC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.19, C:0.20, G:0.33, T:0.29
Consensus pattern (43 bp):
GCATCCGAGCTCGTTGAGTGGTCCGAATTCATTATGGATGCGA
Found at i:24496363 original size:39 final size:39
Alignment explanation
Indices: 24496240--24496379 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 39
24496230 TGAATGCTGT
* * * * *
24496240 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGT-ATGAGTTACTATAA
* **
24496280 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTA-T-TAA
1 CCGGGCTAAG-TCCCGAAGGCA-TTGTATGAGTTACTATAA
*
24496318 TTCCGGGTTAAGTCCCGAAGGCATTGTATGAGTTACTATAA
1 --CCGGGCTAAGTCCCGAAGGCATTGTATGAGTTACTATAA
*
24496359 CCGGGCTATGTCCCGAAGGCA
1 CCGGGCTAAGTCCCGAAGGCA
24496380 CTTGAACGAG
Statistics
Matches: 80, Mismatches: 13, Indels: 15
0.74 0.12 0.14
Matches are distributed among these distances:
38 2 0.03
39 31 0.39
40 39 0.49
41 8 0.10
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTGTATGAGTTACTATAA
Found at i:24498091 original size:125 final size:125
Alignment explanation
Indices: 24497910--24498150 Score: 439
Period size: 125 Copynumber: 1.9 Consensus size: 125
24497900 GTGTAGCGCC
*
24497910 TGCTCCCGCACAAGGGACACTGCCGGCAGACTCTCAACCTAATGCTAGTAATCCGAATGATGAAG
1 TGCTCCCGCACAAGGGACACTGCCGGCAGACTCTCAACCTAATGCTAGTAACCCGAATGATGAAG
24497975 CTAGACAAGCATTCTATAGCGTGATGAATGATTGGTTCAACCAATACATTCTGTGGTGCT
66 CTAGACAAGCATTCTATAGCGTGATGAATGATTGGTTCAACCAATACATTCTGTGGTGCT
*
24498035 TGCTCCCGCACAAGGGACAGC-GCCGGCGGACTCTCAACCTAATGCTAGTAACCCGAATGATGAA
1 TGCTCCCGCACAAGGGACA-CTGCCGGCAGACTCTCAACCTAATGCTAGTAACCCGAATGATGAA
*
24498099 GCTAGACAAGCTTTCTATAGCGTGATGAATGATTGGTTCAACCAATACATTC
65 GCTAGACAAGCATTCTATAGCGTGATGAATGATTGGTTCAACCAATACATTC
24498151 GAACTAATAT
Statistics
Matches: 112, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
125 111 0.99
126 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (125 bp):
TGCTCCCGCACAAGGGACACTGCCGGCAGACTCTCAACCTAATGCTAGTAACCCGAATGATGAAG
CTAGACAAGCATTCTATAGCGTGATGAATGATTGGTTCAACCAATACATTCTGTGGTGCT
Found at i:24504330 original size:40 final size:40
Alignment explanation
Indices: 24504246--24504429 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
24504236 TTGAATGCTG
* * * *
24504246 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
24504285 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
24504326 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
24504366 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
24504406 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
24504430 GTATGAGTTA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.02
40 113 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:24504383 original size:80 final size:81
Alignment explanation
Indices: 24504246--24504426 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
24504236 TTGAATGCTG
* *
24504246 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
24504310 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
24504326 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
24504387 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
24504406 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
24504427 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:24512650 original size:34 final size:34
Alignment explanation
Indices: 24512604--24512670 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 34
24512594 TGATTATTTG
*
24512604 ATCGTACTGATTTAGATCAGGGAAAGAAAAAAGC
1 ATCGTACGGATTTAGATCAGGGAAAGAAAAAAGC
** *
24512638 ATCGTACGGATTTAGATTGGGGAAAGGAAAAAG
1 ATCGTACGGATTTAGATCAGGGAAAGAAAAAAG
24512671 TGTCAGATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.42, C:0.09, G:0.28, T:0.21
Consensus pattern (34 bp):
ATCGTACGGATTTAGATCAGGGAAAGAAAAAAGC
Found at i:24526764 original size:93 final size:93
Alignment explanation
Indices: 24526651--24526822 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
24526641 CGCCCATAAG
* *
24526651 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
24526716 ACGAGTTCGGATGCCTATTTACATCTCA
66 ACGAGTTCGGATGCCTATTTACATCTCA
*
24526744 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
24526809 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
24526823 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTATTTACATCTCA
Found at i:24526819 original size:46 final size:46
Alignment explanation
Indices: 24526644--24526819 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
24526634 TGTAACCCGC
* * *
24526644 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* **
24526690 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTCGCAT
*
24526740 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
24526783 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
24526820 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.05
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:24529968 original size:20 final size:21
Alignment explanation
Indices: 24529945--24529983 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
24529935 CATATCATAT
24529945 AAATAAC-ATTAAATTACTTA
1 AAATAACAATTAAATTACTTA
*
24529965 AAATAACAATTATATTACT
1 AAATAACAATTAAATTACT
24529984 ACATTTACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.36
Consensus pattern (21 bp):
AAATAACAATTAAATTACTTA
Found at i:24531288 original size:31 final size:31
Alignment explanation
Indices: 24531252--24531323 Score: 110
Period size: 31 Copynumber: 2.3 Consensus size: 31
24531242 AAGAACTAAT
*
24531252 AATATTTCATTAAACTTCAAAAACCATACTA
1 AATATTTCATTAAACTTAAAAAACCATACTA
*
24531283 AATATTTCATTAAGCTTAAAAAACCATACTA
1 AATATTTCATTAAACTTAAAAAACCATACTA
24531314 AA-ATGTTCAT
1 AATAT-TTCAT
24531324 GGAAAAACCT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 2 0.05
31 36 0.95
ACGTcount: A:0.47, C:0.17, G:0.03, T:0.33
Consensus pattern (31 bp):
AATATTTCATTAAACTTAAAAAACCATACTA
Found at i:24533646 original size:19 final size:20
Alignment explanation
Indices: 24533624--24533685 Score: 62
Period size: 19 Copynumber: 3.2 Consensus size: 20
24533614 TAAAGTTAAA
24533624 AAATATTTTAAAAAATTA-T
1 AAATATTTTAAAAAATTATT
*
24533643 AAAT-TTTTAAATACATTATT
1 AAATATTTTAAA-AAATTATT
24533663 AAA-A-TTTATAAAAA-TATT
1 AAATATTTTA-AAAAATTATT
24533681 AAATA
1 AAATA
24533686 AAATTTAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
18 14 0.39
19 16 0.44
20 6 0.17
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (20 bp):
AAATATTTTAAAAAATTATT
Found at i:24533690 original size:22 final size:20
Alignment explanation
Indices: 24533662--24533715 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
24533652 AATACATTAT
*
24533662 TAAAATTTATAAAAATATTAAA
1 TAAAATTTA-AAAAAT-TCAAA
*
24533684 TAAAATTTAAAAAGTTCAAA
1 TAAAATTTAAAAAATTCAAA
24533704 TAAAA-TTAAAAA
1 TAAAATTTAAAAA
24533716 TTAATAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 7 0.23
20 9 0.30
21 5 0.17
22 9 0.30
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (20 bp):
TAAAATTTAAAAAATTCAAA
Found at i:24534964 original size:15 final size:15
Alignment explanation
Indices: 24534944--24534974 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
24534934 TTAAAAAGGT
24534944 AAATGTCATTCTAAA
1 AAATGTCATTCTAAA
24534959 AAATGTCATTCTAAA
1 AAATGTCATTCTAAA
24534974 A
1 A
24534975 TCTTACATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.13, G:0.06, T:0.32
Consensus pattern (15 bp):
AAATGTCATTCTAAA
Found at i:24535680 original size:22 final size:20
Alignment explanation
Indices: 24535654--24535695 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
24535644 TCAATTTTAT
24535654 TTGAACCGAATGAATCAGTTAA
1 TTGAACCG-A-GAATCAGTTAA
*
24535676 TTGAACTGAGAATCAGTTAA
1 TTGAACCGAGAATCAGTTAA
24535696 AATATTAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 11 0.58
21 1 0.05
22 7 0.37
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (20 bp):
TTGAACCGAGAATCAGTTAA
Found at i:24536550 original size:30 final size:30
Alignment explanation
Indices: 24536515--24536576 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
24536505 ATAATTTAAG
24536515 ATATTAATTACGTAAAAATATATAAAATTT
1 ATATTAATTACGTAAAAATATATAAAATTT
* *
24536545 ATATTAATTACTTAAAAATATTTAAAATTT
1 ATATTAATTACGTAAAAATATATAAAATTT
24536575 AT
1 AT
24536577 TTCATATATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.44
Consensus pattern (30 bp):
ATATTAATTACGTAAAAATATATAAAATTT
Found at i:24536989 original size:18 final size:19
Alignment explanation
Indices: 24536951--24536990 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
24536941 CTAAGATAGC
**
24536951 AAATACTTAAAAATATTTA
1 AAATACTTAAAAATAAATA
24536970 AAAT-CTTAAAAATAAATA
1 AAATACTTAAAAATAAATA
24536988 AAA
1 AAA
24536991 GTTTATAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (19 bp):
AAATACTTAAAAATAAATA
Found at i:24538844 original size:26 final size:26
Alignment explanation
Indices: 24538815--24538867 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24538805 ATATTGAGAT
*
24538815 AGTAGAACTCCCGTTTGAACCTTAGG
1 AGTAGAACTCCCCTTTGAACCTTAGG
24538841 AGTAGAACTCCCCTTTGAACCTTAGG
1 AGTAGAACTCCCCTTTGAACCTTAGG
24538867 A
1 A
24538868 AATAAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
AGTAGAACTCCCCTTTGAACCTTAGG
Found at i:24539035 original size:45 final size:46
Alignment explanation
Indices: 24538970--24539131 Score: 129
Period size: 45 Copynumber: 3.5 Consensus size: 46
24538960 GGCGTAAGAC
* * *
24538970 CATGTTTGGGACATGGCATCGTCATTGAGACG-AGAGCTAGTGTAAAA
1 CATGTCTGGGACAT-GCATCGGCATCGAGACGTA-AGCTAGTGTAAAA
* * * *
24539017 CATG-CTGGGGCATGCATCGGCCTCGAGATGTAAGCTAGTGTAAGA
1 CATGTCTGGGACATGCATCGGCATCGAGACGTAAGCTAGTGTAAAA
* * *
24539062 CATGTCTAGGACATGCATCGGC-TACGAGATGT--G-TCAGTGTAAGAC
1 CATGTCTGGGACATGCATCGGCAT-CGAGACGTAAGCT-AGTGTAA-AA
*
24539107 CATGTCTGGGACATGGCACCGGCAT
1 CATGTCTGGGACAT-GCATCGGCAT
24539132 GTATAGAGGT
Statistics
Matches: 95, Mismatches: 13, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 8 0.08
45 43 0.45
46 38 0.40
47 5 0.05
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (46 bp):
CATGTCTGGGACATGCATCGGCATCGAGACGTAAGCTAGTGTAAAA
Found at i:24539090 original size:46 final size:46
Alignment explanation
Indices: 24538911--24539218 Score: 156
Period size: 48 Copynumber: 6.6 Consensus size: 46
24538901 TTATTTGTGT
* * * * * *
24538911 GCTAGTGTAAGACATGTCTAGAACATGCATCGGCCA-TATTATGAAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGTAA
** * * * * *
24538957 GCCGGCGTAAGACCATGTTTGGGACATGGCATCGTC-ATTGAGACG-AGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAGATGTA-A
* *
24539005 GCTAGTGTAAAACATG-CTGGGGCATGCATCGGCCT-CGAGATGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGTAA
*
24539050 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCTACGAGATGT--
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTAA
* * *
24539094 G-TCAGTGTAAGACCATGTCTGGGACATGGCACCGGCATGTA-TAGAGGT--
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC---TACGAGATGTAA
* * * *
24539142 GCCAGTGTAAGACCATATCTGGGACATGGCATCGAC-ACGGATATGTGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTAC-GAGATGT-A-A
24539192 GCTAGTGTAAGACCATGTCT-GGACATG
1 GCTAGTGTAAGA-CATGTCTGGGACATG
24539219 GCGTCAACCT
Statistics
Matches: 204, Mismatches: 35, Indels: 44
0.72 0.12 0.16
Matches are distributed among these distances:
43 1 0.00
44 11 0.05
45 42 0.21
46 51 0.25
47 17 0.08
48 55 0.27
49 9 0.04
50 18 0.09
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTAA
Found at i:24539157 original size:48 final size:50
Alignment explanation
Indices: 24539096--24539220 Score: 157
Period size: 48 Copynumber: 2.6 Consensus size: 50
24539086 CGAGATGTGT
* * * *
24539096 CAGTGTAAGACCATGTCTGGGACATGGCACCGGCATGTATA-GAG-GTGC
1 CAGTGTAAGACCATGTCTGGGACATGGCACCGACACGGATATGAGAGAGC
* * *
24539144 CAGTGTAAGACCATATCTGGGACATGGCATCGACACGGATATGTGAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCACCGACACGGATATGAGAGAGC
*
24539194 TAGTGTAAGACCATGTCT-GGACATGGC
1 CAGTGTAAGACCATGTCTGGGACATGGC
24539221 GTCAACCTCA
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
48 36 0.55
49 11 0.17
50 19 0.29
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (50 bp):
CAGTGTAAGACCATGTCTGGGACATGGCACCGACACGGATATGAGAGAGC
Found at i:24540474 original size:17 final size:19
Alignment explanation
Indices: 24540452--24540488 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
24540442 TTGGGTTTTA
24540452 TGGGCC-ACACGGG-CATG
1 TGGGCCTACACGGGCCATG
*
24540469 TGGGCCTACATGGGCCATG
1 TGGGCCTACACGGGCCATG
24540488 T
1 T
24540489 TATGGGGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 6 0.35
19 5 0.29
ACGTcount: A:0.16, C:0.27, G:0.38, T:0.19
Consensus pattern (19 bp):
TGGGCCTACACGGGCCATG
Found at i:24549511 original size:16 final size:17
Alignment explanation
Indices: 24549490--24549523 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
24549480 TTATTATTAA
*
24549490 GATTAAT-ATAGTAAAT
1 GATTAATAATAGAAAAT
24549506 GATTAATAATAGAAAAT
1 GATTAATAATAGAAAAT
24549523 G
1 G
24549524 TAAAAGAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.53, C:0.00, G:0.15, T:0.32
Consensus pattern (17 bp):
GATTAATAATAGAAAAT
Found at i:24549813 original size:28 final size:28
Alignment explanation
Indices: 24549777--24549830 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
24549767 AATTTGATAA
24549777 TTGATGATGGATTTTGAATAATTGTTAG
1 TTGATGATGGATTTTGAATAATTGTTAG
24549805 TTGATGATGGATTTTGAATAATTGTT
1 TTGATGATGGATTTTGAATAATTGTT
24549831 GATGGTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.48
Consensus pattern (28 bp):
TTGATGATGGATTTTGAATAATTGTTAG
Found at i:24560401 original size:26 final size:24
Alignment explanation
Indices: 24560371--24560420 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
24560361 AAATAAAAAA
*
24560371 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
24560397 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
24560421 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:24567948 original size:24 final size:24
Alignment explanation
Indices: 24567916--24567963 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
24567906 CTATGCAGAG
24567916 TAAGGAAGAAACAATATTGGGTAT
1 TAAGGAAGAAACAATATTGGGTAT
*
24567940 TAAGGAAGAAGCAATATTGGGTAT
1 TAAGGAAGAAACAATATTGGGTAT
24567964 CATCTTCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.44, C:0.04, G:0.27, T:0.25
Consensus pattern (24 bp):
TAAGGAAGAAACAATATTGGGTAT
Found at i:24578310 original size:40 final size:40
Alignment explanation
Indices: 24578265--24578460 Score: 250
Period size: 40 Copynumber: 4.9 Consensus size: 40
24578255 GGATATAGCT
* * * *
24578265 ACTCGCTCGAATGCCTTCGGGACATAGCCCGGTTATGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
*
24578305 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* * *
24578345 ACTCACACGAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* * ** *
24578385 ACTCACACAAATGCCTTCGGGGCTTAGCCC-GAAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
*
24578425 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
24578461 CATCCGAATA
Statistics
Matches: 134, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
39 2 0.01
40 130 0.97
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:24578356 original size:80 final size:79
Alignment explanation
Indices: 24578253--24578460 Score: 285
Period size: 80 Copynumber: 2.6 Consensus size: 79
24578243 CGAAATTTAA
* * * *
24578253 CCGGATATAGCTACTCGCTCGAATGCCTTCGGGACATAGCCCGGTTATGGTAACTCGCACAAATG
1 CCGGATATAG-TACTCACACGAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACACAAATG
24578318 CCTTCGGGACTTAGC
65 CCTTCGGGACTTAGC
24578333 CCGGATATAGTAACTCACACGAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACACAAATG
1 CCGGATATAGT-ACTCACACGAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACACAAATG
*
24578398 CCTTCGGGGCTTAGC
65 CCTTCGGGACTTAGC
* * *
24578413 CC-GAAATTAGTCACT-AGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CCGGATA-TAGT-ACTCA-CACGAATGCCTTCGGGACATAGCCCGGTTAT
24578461 CATCCGAATA
Statistics
Matches: 116, Mismatches: 9, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
79 5 0.04
80 111 0.96
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (79 bp):
CCGGATATAGTACTCACACGAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACACAAATGC
CTTCGGGACTTAGC
Found at i:24588772 original size:9 final size:9
Alignment explanation
Indices: 24588758--24588787 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
24588748 ATTGCATACA
24588758 ATTCAAAAC
1 ATTCAAAAC
24588767 ATTCAAAAC
1 ATTCAAAAC
24588776 ATTCAAAAC
1 ATTCAAAAC
24588785 ATT
1 ATT
24588788 TGATTTCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.53, C:0.20, G:0.00, T:0.27
Consensus pattern (9 bp):
ATTCAAAAC
Found at i:24590719 original size:31 final size:31
Alignment explanation
Indices: 24590677--24590753 Score: 145
Period size: 31 Copynumber: 2.5 Consensus size: 31
24590667 TAACGGTTAT
24590677 TGGGCCGAAGCCTTTTCATAAATCATATCAC
1 TGGGCCGAAGCCTTTTCATAAATCATATCAC
*
24590708 TGGGCCAAAGCCTTTTCATAAATCATATCAC
1 TGGGCCGAAGCCTTTTCATAAATCATATCAC
24590739 TGGGCCGAAGCCTTT
1 TGGGCCGAAGCCTTT
24590754 ACTGTAACGG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (31 bp):
TGGGCCGAAGCCTTTTCATAAATCATATCAC
Found at i:24590827 original size:42 final size:42
Alignment explanation
Indices: 24590780--24590867 Score: 131
Period size: 42 Copynumber: 2.1 Consensus size: 42
24590770 CTTTAGGCCT
* ** *
24590780 ATTTCAATATCACATGTAATGTCAATGGATGTATGAAAGCCC
1 ATTTCAATATCACATGAAATACCAATGAATGTATGAAAGCCC
*
24590822 ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
1 ATTTCAATATCACATGAAATACCAATGAATGTATGAAAGCCC
24590864 ATTT
1 ATTT
24590868 GGGGAGACTA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.31
Consensus pattern (42 bp):
ATTTCAATATCACATGAAATACCAATGAATGTATGAAAGCCC
Found at i:24591928 original size:26 final size:28
Alignment explanation
Indices: 24591884--24591935 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
24591874 TACAAGGGTA
24591884 TTACGGTCACTTTACCCTA-TAGGGGCT
1 TTACGGTCACTTTACCCTATTAGGGGCT
**
24591911 TTACGGTCTTTTTA-CCTATTAGGGG
1 TTACGGTCACTTTACCCTATTAGGGG
24591936 TATTTTAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.38
Consensus pattern (28 bp):
TTACGGTCACTTTACCCTATTAGGGGCT
Found at i:24592010 original size:27 final size:27
Alignment explanation
Indices: 24591980--24592093 Score: 88
Period size: 27 Copynumber: 4.1 Consensus size: 27
24591970 GTAAATCTAC
24591980 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
** *
24592007 AAACCAATAGTATTCCTA-TAATTTT-T
1 AAACCAAGGGTATT-TTAGTAATTTTGT
* *
24592033 AAAAAAGTCAAGGGTATTTTTGTAATTTTGT
1 ---AAA-CCAAGGGTATTTTAGTAATTTTGT
* * * *
24592064 AAATCAGGGGTATTTTGGTAATTTTAT
1 AAACCAAGGGTATTTTAGTAATTTTGT
24592091 AAA
1 AAA
24592094 TTGAGGGTAT
Statistics
Matches: 69, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
26 1 0.01
27 43 0.62
28 5 0.07
29 4 0.06
30 15 0.22
31 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTTAGTAATTTTGT
Found at i:24592094 original size:27 final size:26
Alignment explanation
Indices: 24592044--24592140 Score: 97
Period size: 27 Copynumber: 3.6 Consensus size: 26
24592034 AAAAAGTCAA
*
24592044 GGGTATTTTTGTAATTTTGTAAATCAG
1 GGGTATTTTGGTAATTTT-TAAATCAG
*
24592071 GGGTATTTTGGTAATTTTATAAAT-TG
1 GGGTATTTTGGTAATTTT-TAAATCAG
* * *
24592097 AGGGTATTTCGGTAATTTCTCAAACCAG
1 -GGGTATTTTGGTAATTT-TTAAATCAG
*
24592125 TGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
24592141 CTATCCTACA
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
26 1 0.02
27 55 0.95
28 2 0.03
ACGTcount: A:0.26, C:0.06, G:0.23, T:0.45
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTTAAATCAG
Found at i:24592233 original size:27 final size:27
Alignment explanation
Indices: 24592172--24592258 Score: 99
Period size: 27 Copynumber: 3.3 Consensus size: 27
24592162 GTAATTTCAC
24592172 AATCGATG-GTAAAACGGTAATTTTGTA
1 AATCGA-GAGTAAAACGGTAATTTTGTA
*
24592199 AA-CTGAGAGTAAAATGGTAATTTTGTA
1 AATC-GAGAGTAAAACGGTAATTTTGTA
* * *
24592226 AATCGAGA-TAAAACGATAATTCTATA
1 AATCGAGAGTAAAACGGTAATTTTGTA
24592252 AATCGAG
1 AATCGAG
24592259 GGTACTTTGG
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
26 23 0.44
27 28 0.54
28 1 0.02
ACGTcount: A:0.43, C:0.08, G:0.20, T:0.30
Consensus pattern (27 bp):
AATCGAGAGTAAAACGGTAATTTTGTA
Found at i:24597715 original size:13 final size:13
Alignment explanation
Indices: 24597697--24597723 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
24597687 GCTCGACAGG
24597697 GACACGCCCGTGT
1 GACACGCCCGTGT
24597710 GACACGCCCGTGT
1 GACACGCCCGTGT
24597723 G
1 G
24597724 CGATTACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:24616277 original size:15 final size:15
Alignment explanation
Indices: 24616257--24616285 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
24616247 AATTTTTCCC
24616257 AAAAATAAAAATAAT
1 AAAAATAAAAATAAT
24616272 AAAAATAAAAATAA
1 AAAAATAAAAATAA
24616286 ACCAATCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (15 bp):
AAAAATAAAAATAAT
Found at i:24623668 original size:27 final size:27
Alignment explanation
Indices: 24623633--24623684 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
24623623 GGAAGTACTG
*
24623633 TACTGGTGGCTATGCCACAATTACTAA
1 TACTAGTGGCTATGCCACAATTACTAA
* *
24623660 TACTAGTGGCTTTGCCACATTTACT
1 TACTAGTGGCTATGCCACAATTACT
24623685 GTTTCTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (27 bp):
TACTAGTGGCTATGCCACAATTACTAA
Found at i:24623879 original size:28 final size:27
Alignment explanation
Indices: 24623843--24623907 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 27
24623833 ATTACACTGC
* *
24623843 ACTGATACTATATTGGGCTTAGGCCCAG
1 ACTG-TACTATATAGGGCTAAGGCCCAG
* *
24623871 ACTGTTACTGTATAGGGCTAAGGCCTAG
1 ACTG-TACTATATAGGGCTAAGGCCCAG
24623899 ACTGTACTA
1 ACTGTACTA
24623908 ATACTGTATA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
27 4 0.13
28 27 0.87
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (27 bp):
ACTGTACTATATAGGGCTAAGGCCCAG
Found at i:24625031 original size:12 final size:12
Alignment explanation
Indices: 24625014--24625043 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
24625004 CAGTTCAATA
24625014 ATATTTCTACAC
1 ATATTTCTACAC
*
24625026 ATATTTCTTCAC
1 ATATTTCTACAC
24625038 ATATTT
1 ATATTT
24625044 TCTCTGTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.20, G:0.00, T:0.50
Consensus pattern (12 bp):
ATATTTCTACAC
Found at i:24627062 original size:90 final size:90
Alignment explanation
Indices: 24626795--24627114 Score: 437
Period size: 90 Copynumber: 3.6 Consensus size: 90
24626785 TCAAAATAAT
* * * *
24626795 TGTATT-ATTTCTTTAGAATGTTTGAATTTTTTTTATATCTGTGAATTTAATGTAGTTGTTTAGG
1 TGTATTAATTTC-TTAGAATGTTTGTA-TTTTTTTATATCTATAAATTTAATATAGTTGTTTAGG
*
24626859 AATTAAGGTATCATTTTTATATTTTCA
64 ATTTAAGGTATCATTTTTATATTTTCA
* * * *
24626886 TGTATTAATTTCTTAGAATGTTTCTA-TTTTTTACATCTATAAATTTATTATAGTTATTTAGGAT
1 TGTATTAATTTCTTAGAATGTTTGTATTTTTTTATATCTATAAATTTAATATAGTTGTTTAGGAT
* *
24626950 GTAAGGTATCATTTTTATATTTTCG
66 TTAAGGTATCATTTTTATATTTTCA
* *
24626975 TGTATTAATTTCTTAGAATGTTTGTATTTTATTATATCTATAAATTTAATATAGTTGTCTAGGAT
1 TGTATTAATTTCTTAGAATGTTTGTATTTTTTTATATCTATAAATTTAATATAGTTGTTTAGGAT
*
24627040 TTAAGGTTTCATTTTTATATTTTCA
66 TTAAGGTATCATTTTTATATTTTCA
* * * * *
24627065 TCTATTAATTTCTCAGAATGTTTGTATTTTTTTGTATTTGTAAATTTAAT
1 TGTATTAATTTCTTAGAATGTTTGTATTTTTTTATATCTATAAATTTAAT
24627115 TTAATCCATA
Statistics
Matches: 201, Mismatches: 26, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
89 79 0.39
90 99 0.49
91 18 0.09
92 5 0.02
ACGTcount: A:0.28, C:0.06, G:0.12, T:0.55
Consensus pattern (90 bp):
TGTATTAATTTCTTAGAATGTTTGTATTTTTTTATATCTATAAATTTAATATAGTTGTTTAGGAT
TTAAGGTATCATTTTTATATTTTCA
Found at i:24629680 original size:48 final size:49
Alignment explanation
Indices: 24629463--24629678 Score: 206
Period size: 49 Copynumber: 4.4 Consensus size: 49
24629453 ACCACGATTA
* *
24629463 ATGAGATCTC-GTGTAAGACCATGTCTGGGACATGGCATTGGCATTCGAG
1 ATGAGATC-CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCCGAG
* * **
24629512 ATGAGATCCGGTGTAAGACCATGTTTGGGACATGGCATCAACATCCGAG
1 ATGAGATCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCCGAG
* ** * *
24629561 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGT-TGAT
1 ATGAGATCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCCGAG
* * * * * *
24629609 ATGTG-TGCTAGTGTAAGACCATATTTGGGACATGGCATCGGCA-CCAAT
1 ATGAGAT-CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCCGAG
* * *
24629657 ATGTGATCCCGTATAAGACCAT
1 ATGAGATCCAGTGTAAGACCAT
24629679 ATCAGGGATA
Statistics
Matches: 137, Mismatches: 26, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
48 57 0.42
49 80 0.58
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (49 bp):
ATGAGATCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCCGAG
Found at i:24631711 original size:20 final size:20
Alignment explanation
Indices: 24631686--24631733 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
24631676 CAGGTTGAAG
24631686 ACACGGGCGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
24631706 ACACGGGCGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
24631726 ACACGGGC
1 ACACGGGC
24631734 ATATGTGACC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.21, C:0.40, G:0.31, T:0.08
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAGCC
Found at i:24633682 original size:16 final size:16
Alignment explanation
Indices: 24633663--24633749 Score: 67
Period size: 16 Copynumber: 5.5 Consensus size: 16
24633653 TTCATAATCA
*
24633663 TCATTTAATTTTATAT
1 TCATTTAATTTCATAT
24633679 TCATTTAA---CAT-T
1 TCATTTAATTTCATAT
24633691 TCATTTAATTTCATAT
1 TCATTTAATTTCATAT
* *
24633707 TCATTACAAATTACAT-T
1 TCATT--TAATTTCATAT
*
24633724 TCATTTCATATTCATATT
1 TCATTTAAT-TTCATA-T
24633742 TCATTTAA
1 TCATTTAA
24633750 CATTTCATTT
Statistics
Matches: 55, Mismatches: 7, Indels: 16
0.71 0.09 0.21
Matches are distributed among these distances:
12 9 0.16
13 2 0.04
15 5 0.09
16 18 0.33
17 6 0.11
18 15 0.27
ACGTcount: A:0.33, C:0.14, G:0.00, T:0.53
Consensus pattern (16 bp):
TCATTTAATTTCATAT
Found at i:24633695 original size:12 final size:12
Alignment explanation
Indices: 24633678--24633761 Score: 57
Period size: 12 Copynumber: 6.8 Consensus size: 12
24633668 TAATTTTATA
24633678 TTCATTTAACAT
1 TTCATTTAACAT
24633690 TTCATTTAATTTCAT
1 TTCATTTAA---CAT
*
24633705 ATTCA-TTACAAAT
1 -TTCATTTA-ACAT
*
24633718 TACATTT--CAT
1 TTCATTTAACAT
* *
24633728 TTCATATTCATAT
1 TTCAT-TTAACAT
24633741 TTCATTTAACAT
1 TTCATTTAACAT
24633753 TTCATTTAA
1 TTCATTTAA
24633762 ATTAATTTTT
Statistics
Matches: 56, Mismatches: 7, Indels: 18
0.69 0.09 0.22
Matches are distributed among these distances:
10 6 0.11
11 2 0.04
12 26 0.46
13 11 0.20
15 6 0.11
16 5 0.09
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.51
Consensus pattern (12 bp):
TTCATTTAACAT
Found at i:24633695 original size:28 final size:28
Alignment explanation
Indices: 24633663--24633761 Score: 108
Period size: 28 Copynumber: 3.3 Consensus size: 28
24633653 TTCATAATCA
*
24633663 TCATTTAATTTTATATTCATTTAACATT
1 TCATTTAATTTCATATTCATTTAACATT
*
24633691 TCATTTAATTTCATATTCATTACAAATTACATT
1 TCATTTAATTTCATATTCATT-----TAACATT
*
24633724 TCATTTCATATTCATATTTCATTTAACATT
1 TCATTTAAT-TTCATA-TTCATTTAACATT
24633754 TCATTTAA
1 TCATTTAA
24633762 ATTAATTTTT
Statistics
Matches: 59, Mismatches: 5, Indels: 12
0.78 0.07 0.16
Matches are distributed among these distances:
28 20 0.34
30 13 0.22
33 14 0.24
34 6 0.10
35 6 0.10
ACGTcount: A:0.33, C:0.14, G:0.00, T:0.53
Consensus pattern (28 bp):
TCATTTAATTTCATATTCATTTAACATT
Found at i:24633730 original size:5 final size:5
Alignment explanation
Indices: 24633642--24633759 Score: 51
Period size: 5 Copynumber: 21.6 Consensus size: 5
24633632 TCTTTTCACC
* * * *
24633642 TTTCA TTCCA TTTCA TAATCA --TCA TTTAA TTTTA TATTCA TTTAACA
1 TTTCA TTTCA TTTCA T-TTCA TTTCA TTTCA TTTCA T-TTCA TTT--CA
* * *
24633689 TTTCA TTTAA TTTCA TATTCA TTACAAA TTACA TTTCA TTTCA TATTCATA
1 TTTCA TTTCA TTTCA T-TTCA TTTC--A TTTCA TTTCA TTTCA T-TTC--A
24633740 TTTCA TTTAACA TTTCA TTT
1 TTTCA TTT--CA TTTCA TTT
24633760 AAATTAATTT
Statistics
Matches: 89, Mismatches: 10, Indels: 28
0.70 0.08 0.22
Matches are distributed among these distances:
3 3 0.03
5 51 0.57
6 15 0.17
7 18 0.20
8 2 0.02
ACGTcount: A:0.31, C:0.16, G:0.00, T:0.53
Consensus pattern (5 bp):
TTTCA
Found at i:24633837 original size:66 final size:66
Alignment explanation
Indices: 24633750--24633884 Score: 152
Period size: 66 Copynumber: 2.0 Consensus size: 66
24633740 TTTCATTTAA
24633750 CATTTCATTTAAATTAATTTTTTTCCTAA-T-A-TACAAATTTTTTTTTCATATTAATCACAAGT
1 CATTTCATTTAAATT-ATTTTTTT-C-AATTCATTACAAA-TTTTTTTTCATATTAATCACAAGT
24633812 AGTCT
62 AGTCT
* * * * *
24633817 CATTTCAATTTAACTT-TTTTTTTCAATTCATTTCATATTTTTTTTCATATTAATTAGAAGTAGT
1 CATTTC-ATTTAAATTATTTTTTTCAATTCATTACAAATTTTTTTTCATATTAATCACAAGTAGT
24633881 CT
65 CT
24633883 CA
1 CA
24633885 ATATTAGAGT
Statistics
Matches: 59, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
64 2 0.03
65 2 0.03
66 37 0.63
67 10 0.17
68 8 0.14
ACGTcount: A:0.30, C:0.13, G:0.04, T:0.53
Consensus pattern (66 bp):
CATTTCATTTAAATTATTTTTTTCAATTCATTACAAATTTTTTTTCATATTAATCACAAGTAGTC
T
Found at i:24634261 original size:11 final size:10
Alignment explanation
Indices: 24634241--24634314 Score: 58
Period size: 11 Copynumber: 6.8 Consensus size: 10
24634231 CTTCTTTTTT
24634241 TTTCATTTCA
1 TTTCATTTCA
24634251 TTTCTATTTCAA
1 TTTC-ATTTC-A
* *
24634263 TTCCATTTAA
1 TTTCATTTCA
*
24634273 TTTGAATTTCTA
1 TTT-CATTTC-A
24634285 TTTCATTTCA
1 TTTCATTTCA
*
24634295 TTTGAATTTCCA
1 TTT-CATTT-CA
24634307 TTTCATTT
1 TTTCATTT
24634315 AAATTATATT
Statistics
Matches: 50, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
10 11 0.22
11 26 0.52
12 13 0.26
ACGTcount: A:0.23, C:0.16, G:0.03, T:0.58
Consensus pattern (10 bp):
TTTCATTTCA
Found at i:24634283 original size:28 final size:28
Alignment explanation
Indices: 24634250--24634303 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
24634240 TTTTCATTTC
24634250 ATTTCTATTTCAATTCCATTT-AATTTGA
1 ATTTCTATTTC-ATTCCATTTGAATTTGA
*
24634278 ATTTCTATTTCATTTCATTTGAATTT
1 ATTTCTATTTCATTCCATTTGAATTT
24634304 CCATTTCATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 8 0.33
28 16 0.67
ACGTcount: A:0.26, C:0.13, G:0.04, T:0.57
Consensus pattern (28 bp):
ATTTCTATTTCATTCCATTTGAATTTGA
Found at i:24634287 original size:6 final size:5
Alignment explanation
Indices: 24634241--24634314 Score: 58
Period size: 5 Copynumber: 13.6 Consensus size: 5
24634231 CTTCTTTTTT
* * *
24634241 TTTCA TTTCA TTTCTA TTTCAA TTCCA TTTAA TTTGAA TTTCTA TTTCA
1 TTTCA TTTCA TTTC-A TTTC-A TTTCA TTTCA TTT-CA TTTC-A TTTCA
*
24634290 TTTCA TTTGAA TTTCCA TTTCA TTT
1 TTTCA TTT-CA TTT-CA TTTCA TTT
24634315 AAATTATATT
Statistics
Matches: 57, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
5 30 0.53
6 27 0.47
ACGTcount: A:0.23, C:0.16, G:0.03, T:0.58
Consensus pattern (5 bp):
TTTCA
Found at i:24634308 original size:17 final size:16
Alignment explanation
Indices: 24634284--24634319 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
24634274 TTGAATTTCT
*
24634284 ATTTCATTTCATTTGA
1 ATTTCATTTCATTTAA
24634300 ATTTCCATTTCATTTAA
1 ATTT-CATTTCATTTAA
24634317 ATT
1 ATT
24634320 ATATTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.28, C:0.14, G:0.03, T:0.56
Consensus pattern (16 bp):
ATTTCATTTCATTTAA
Found at i:24634325 original size:22 final size:22
Alignment explanation
Indices: 24634241--24634666 Score: 109
Period size: 22 Copynumber: 18.6 Consensus size: 22
24634231 CTTCTTTTTT
* * * *
24634241 TTTCATTTCATTTCTATTTCAA
1 TTTCATTTAAATTATATTTCCA
* * *
24634263 TTCCATTTAATTTGA-ATTTCTA
1 TTTCATTTAAATT-ATATTTCCA
* *
24634285 TTTCATTTCATTTGA-ATTTCCA
1 TTTCATTTAAATT-ATATTTCCA
**
24634307 TTTCATTTAAATTATATTT-TT
1 TTTCATTTAAATTATATTTCCA
* *
24634328 TTTCCATTTAAATTTAATTTTTTTCATA
1 TTT-CATTTAAA-TT-A--TATTTC-CA
**
24634356 TTTCATTTATTTTATTTATCTTCCCA
1 TTTCATTTAAATTA--TAT-TT-CCA
*
24634382 TTTTCATTT-AATT-T-TTTTCA
1 -TTTCATTTAAATTATATTTCCA
*
24634402 TTTCATTTAAATTATCTTTATTCCCA
1 TTTCATTTAAATTA----TATTTCCA
* *
24634428 TTTTAATTT-AATT-TTTTTCTCA
1 -TTTCATTTAAATTATATTTC-CA
* *
24634450 TTTCATTTAAATTTATTTTTTTCA
1 TTTCATTTAAA-TTA-TATTTCCA
24634474 TTTCATTTAAATTATCTATCTTCCCA
1 TTTCATTTAAATTA--TAT-TT-CCA
24634500 TTTTCATTT-AATT-T-TTTCTCA
1 -TTTCATTTAAATTATATTTC-CA
24634521 TTTCATTTAAATTAT-TTT---
1 TTTCATTTAAATTATATTTCCA
* * * *
24634539 TTTCAATATAAATTTTTTTTTCTTA
1 TTTC-ATTTAAA-TTATATTTC-CA
*
24634564 TTTCATTTAAATTATATTT--T
1 TTTCATTTAAATTATATTTCCA
*
24634584 TTTCATTTAAATTTAATTTTTTTCTCA
1 TTTCATTTAAA-TT-A--TATTTC-CA
*
24634611 TTTCATTTAAATTATCTTT-C-
1 TTTCATTTAAATTATATTTCCA
* *
24634631 TTTCCATTTTAATT-TTTTTCTCA
1 TTT-CATTTAAATTATATTTC-CA
24634654 TTTCATTTAAATT
1 TTTCATTTAAATT
24634667 TAATTTTTTT
Statistics
Matches: 312, Mismatches: 42, Indels: 100
0.69 0.09 0.22
Matches are distributed among these distances:
18 4 0.01
19 14 0.04
20 36 0.12
21 40 0.13
22 80 0.26
23 22 0.07
24 26 0.08
25 18 0.06
26 27 0.09
27 41 0.13
28 4 0.01
ACGTcount: A:0.25, C:0.13, G:0.00, T:0.62
Consensus pattern (22 bp):
TTTCATTTAAATTATATTTCCA
Found at i:24634331 original size:27 final size:26
Alignment explanation
Indices: 24634301--24634639 Score: 129
Period size: 23 Copynumber: 14.3 Consensus size: 26
24634291 TTCATTTGAA
24634301 TTTCCATTTCATTTAAA-TT-ATATTT
1 TTTCCATTTCATTTAAATTTAAT-TTT
*
24634326 TTT---TTCCATTTAAATTTAATTTT
1 TTTCCATTTCATTTAAATTTAATTTT
* *
24634349 TTTCATATTTCATTT--ATTTTATTTAT
1 TTTC-CATTTCATTTAAATTTAATTT-T
* **
24634375 CTTCC----CATTTTCATTTAATTTT
1 TTTCCATTTCATTTAAATTTAATTTT
24634397 TTT-CATTTCATTTAAA-TT-ATCTTT
1 TTTCCATTTCATTTAAATTTAAT-TTT
* *
24634421 ATTCC----CATTTTAATTTAATTTT
1 TTTCCATTTCATTTAAATTTAATTTT
24634443 TTTCTCATTTCATTTAAATTT-ATTTT
1 TTTC-CATTTCATTTAAATTTAATTTT
*
24634469 TTT-CATTTCATTTAAA-TT-ATCTAT
1 TTTCCATTTCATTTAAATTTAAT-TTT
* **
24634493 CTTCC----CATTTTCATTTAA-TTT
1 TTTCCATTTCATTTAAATTTAATTTT
24634514 TTTCTCATTTCATTTAAA-TT-ATTTT
1 TTTC-CATTTCATTTAAATTTAATTTT
*
24634539 TTT-CA----ATATAAATTT--TTTT
1 TTTCCATTTCATTTAAATTTAATTTT
* *
24634558 TTCT-TATTTCATTTAAA-TT-A-TAT
1 TT-TCCATTTCATTTAAATTTAATTTT
24634581 TTT---TTTCATTTAAATTTAATTTT
1 TTTCCATTTCATTTAAATTTAATTTT
24634604 TTTCTCATTTCATTTAAA-TT-ATCTTT
1 TTTC-CATTTCATTTAAATTTAAT-TTT
24634630 CTTTCCATTT
1 -TTTCCATTT
24634640 TAATTTTTTT
Statistics
Matches: 240, Mismatches: 26, Indels: 95
0.66 0.07 0.26
Matches are distributed among these distances:
19 12 0.05
20 15 0.06
21 26 0.11
22 26 0.11
23 39 0.16
24 33 0.14
25 29 0.12
26 28 0.12
27 32 0.13
ACGTcount: A:0.25, C:0.13, G:0.00, T:0.63
Consensus pattern (26 bp):
TTTCCATTTCATTTAAATTTAATTTT
Found at i:24634391 original size:48 final size:46
Alignment explanation
Indices: 24634301--24634468 Score: 194
Period size: 48 Copynumber: 3.5 Consensus size: 46
24634291 TTCATTTGAA
* * * *
24634301 TTTCCATTTCATTTAAATTATATTTTTTTTCCATTTAAATTTAATTTT
1 TTTCTATTTCATTT-AATT-TATTTTATTCCCATTTTAATTTAATTTT
* * *
24634349 TTTCATATTTCATTTATTTTATTTATCTTCCCATTTTCATTTAATTTT
1 TTTC-TATTTCATTTAATTTATTT-TATTCCCATTTTAATTTAATTTT
*
24634397 TTTC-ATTTCATTTAAATTATCTTTATTCCCATTTTAATTTAATTTT
1 TTTCTATTTCATTTAATTTAT-TTTATTCCCATTTTAATTTAATTTT
24634443 TTTCTCATTTCATTTAAATTTATTTT
1 TTTCT-ATTTCATTT-AATTTATTTT
24634469 TTTCATTTCA
Statistics
Matches: 103, Mismatches: 11, Indels: 12
0.82 0.09 0.10
Matches are distributed among these distances:
46 39 0.38
47 7 0.07
48 42 0.41
49 15 0.15
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.63
Consensus pattern (46 bp):
TTTCTATTTCATTTAATTTATTTTATTCCCATTTTAATTTAATTTT
Found at i:24634529 original size:47 final size:46
Alignment explanation
Indices: 24634453--24634666 Score: 239
Period size: 43 Copynumber: 4.8 Consensus size: 46
24634443 TTTCTCATTT
*
24634453 CATTTAAATTT-ATTTTTT-TCATTTCATTTAAATTATCTATCTTCC
1 CATTTAAATTTAATTTTTTCTCATTTCATTTAAATTATCT-TCTTTC
** *
24634498 CATTTTCATTTAATTTTTTCTCATTTCATTTAAATTAT-TTTTTTC
1 CATTTAAATTTAATTTTTTCTCATTTCATTTAAATTATCTTCTTTC
* * * * * *
24634543 AATATAAATTT--TTTTTTCTTATTTCATTTAAATTATATTTTTTT
1 CATTTAAATTTAATTTTTTCTCATTTCATTTAAATTATCTTCTTTC
24634587 CATTTAAATTTAATTTTTTTCTCATTTCATTTAAATTATCTTTCTTTC
1 CATTTAAATTTAA-TTTTTTCTCATTTCATTTAAATTATC-TTCTTTC
*
24634635 CATTTTAA--T--TTTTTTCTCATTTCATTTAAATT
1 CATTTAAATTTAATTTTTTCTCATTTCATTTAAATT
24634667 TAATTTTTTT
Statistics
Matches: 145, Mismatches: 17, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
43 47 0.32
44 15 0.10
45 20 0.14
46 9 0.06
47 42 0.29
48 12 0.08
ACGTcount: A:0.26, C:0.12, G:0.00, T:0.62
Consensus pattern (46 bp):
CATTTAAATTTAATTTTTTCTCATTTCATTTAAATTATCTTCTTTC
Found at i:24634645 original size:27 final size:24
Alignment explanation
Indices: 24634426--24634727 Score: 114
Period size: 24 Copynumber: 13.0 Consensus size: 24
24634416 TCTTTATTCC
*
24634426 CATTTTAATTT-AATTTTTT-TCT
1 CATTTTAATTTAAATTTTTTCTTT
* *
24634448 CA-TTTCATTTAAATTTATTTTTTT
1 CATTTTAATTTAAATTT-TTTCTTT
* * *
24634472 CA-TTTCATTTAAATTATCTATCTTCC
1 CATTTTAATTTAAATT-T-TTTCTT-T
*
24634498 CATTTTCATTT-AATTTTTTC--T
1 CATTTTAATTTAAATTTTTTCTTT
*
24634519 CA-TTTCATTTAAATTATTTT-TTT
1 CATTTTAATTTAAATT-TTTTCTTT
*
24634542 CA-----ATATAAATTTTTT-TTT
1 CATTTTAATTTAAATTTTTTCTTT
* * *
24634560 CTTATTTCATTTAAATTATATTTTTTT
1 CAT-TTTAATTTAAATT-T-TTTCTTT
* *
24634587 CATTTAAATTT-AATTTTTT-TCT
1 CATTTTAATTTAAATTTTTTCTTT
*
24634609 CA-TTTCATTTAAATTATCTTTCTTT
1 CATTTTAATTTAAATT-T-TTTCTTT
*
24634634 CCATTTTAATTT---TTTTCTCATTT
1 -CATTTTAATTTAAATTTTTTC-TTT
*
24634657 CATTTAAATTT-AA-TTTTT-TTT
1 CATTTTAATTTAAATTTTTTCTTT
*
24634678 C-TTTTCATTTAAATTATCTTTCTTT
1 CATTTTAATTTAAATT-T-TTTCTTT
*
24634703 CCATTTTAATTTACATTTTTCTCTT
1 -CATTTTAATTTAAATTTTT-TCTT
24634728 ATTATTTTTC
Statistics
Matches: 218, Mismatches: 26, Indels: 68
0.70 0.08 0.22
Matches are distributed among these distances:
18 8 0.04
19 8 0.04
20 15 0.07
21 25 0.11
22 33 0.15
23 19 0.09
24 37 0.17
25 18 0.08
26 23 0.11
27 32 0.15
ACGTcount: A:0.24, C:0.13, G:0.00, T:0.63
Consensus pattern (24 bp):
CATTTTAATTTAAATTTTTTCTTT
Found at i:24634683 original size:26 final size:27
Alignment explanation
Indices: 24634638--24634692 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 27
24634628 TTCTTTCCAT
24634638 TTTAATTTTTTTCTCATTTCATTTAAA
1 TTTAATTTTTTTCTCATTTCATTTAAA
*
24634665 TTTAATTTTTTT-TCTTTTCATTTAAA
1 TTTAATTTTTTTCTCATTTCATTTAAA
24634691 TT
1 TT
24634693 ATCTTTCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 15 0.56
27 12 0.44
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (27 bp):
TTTAATTTTTTTCTCATTTCATTTAAA
Found at i:24634688 original size:90 final size:88
Alignment explanation
Indices: 24634457--24634689 Score: 274
Period size: 90 Copynumber: 2.6 Consensus size: 88
24634447 TCATTTCATT
* * * **
24634457 TAAATTTATTTTTTTCATTTCATTTAAATTATCTATCTTCCCATTTTCATTTAATTTTTTCTCAT
1 TAAATTT-TTTTTCTCATTTCATTTAAATTATAT-TTTTTTCATTTTCATTTAATTTTTTCTCAT
24634522 TTCATTTAAATTATTTTTTTCAATA
64 TTCATTTAAATTATTTTTTTCAATA
* **
24634547 TAAATTTTTTTTTCTTATTTCATTTAAATTATATTTTTTTCATTTAAATTTAATTTTTTTCTCAT
1 TAAA-TTTTTTTTCTCATTTCATTTAAATTATATTTTTTTCATTTTCATTTAA-TTTTTTCTCAT
* *
24634612 TTCATTTAAATTATCTTTCTTTCCATT
64 TTCATTTAAATTAT-TTT-TTTCAATA
*
24634639 TTAA-TTTTTTTCTCATTTCATTTAAATT-TAATTTTTTTTC-TTTTCATTTAA
1 TAAATTTTTTTTCTCATTTCATTTAAATTAT-A-TTTTTTTCATTTTCATTTAA
24634690 ATTATCTTTC
Statistics
Matches: 123, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
89 15 0.12
90 85 0.69
91 14 0.11
92 9 0.07
ACGTcount: A:0.25, C:0.12, G:0.00, T:0.63
Consensus pattern (88 bp):
TAAATTTTTTTTCTCATTTCATTTAAATTATATTTTTTTCATTTTCATTTAATTTTTTCTCATTT
CATTTAAATTATTTTTTTCAATA
Found at i:24634708 original size:90 final size:89
Alignment explanation
Indices: 24634453--24634713 Score: 255
Period size: 90 Copynumber: 2.9 Consensus size: 89
24634443 TTTCTCATTT
* * * **
24634453 CATTTAAATTTATTTTTTTCATTTCATTTAAATTATCTATCTTCCCATTTTCATTTAATTT-TTT
1 CATTTAAATTT-TTTTTCTCATTTCATTTAAATTATAT-TTTTTTCATTTTCATTTAATTTCTTT
*
24634517 CTCATTTCATTTAAATTATTTT-TTTC
64 CT-ATTCCATTTAAATTATTTTCTTTC
* * * ** *
24634543 AATATAAATTTTTTTTTCTTATTTCATTTAAATTATATTTTTTTCATTTAAATTTAATTTTTTTC
1 CATTTAAA-TTTTTTTTCTCATTTCATTTAAATTATATTTTTTTCATTTTCATTTAATTTCTTTC
*
24634608 TCATTTCATTTAAATTATCTTTCTTTC
65 T-ATTCCATTTAAATTAT-TTTCTTTC
*
24634635 CATTTTAA-TTTTTTTCTCATTTCATTTAAATT-TAATTTTTTTTC-TTTTCATTTAAATTATCT
1 CATTTAAATTTTTTTTCTCATTTCATTTAAATTAT-A-TTTTTTTCATTTTCATTT-AATT-TCT
*
24634697 TTCT-TTCCATTTTAATT
62 TTCTATTCCATTTAAATT
24634714 TACATTTTTC
Statistics
Matches: 144, Mismatches: 19, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
89 18 0.12
90 93 0.65
91 18 0.12
92 15 0.10
ACGTcount: A:0.25, C:0.12, G:0.00, T:0.63
Consensus pattern (89 bp):
CATTTAAATTTTTTTTCTCATTTCATTTAAATTATATTTTTTTCATTTTCATTTAATTTCTTTCT
ATTCCATTTAAATTATTTTCTTTC
Found at i:24639428 original size:29 final size:30
Alignment explanation
Indices: 24639396--24639460 Score: 105
Period size: 29 Copynumber: 2.2 Consensus size: 30
24639386 AATAATTAAT
*
24639396 ATTTTATAATTTTTTAAAGATT-AAATATA
1 ATTTTATAATTTTTTAAAAATTAAAATATA
*
24639425 ATTTTATTATTTTTTAAAAATTAAAATATA
1 ATTTTATAATTTTTTAAAAATTAAAATATA
24639455 ATTTTA
1 ATTTTA
24639461 CTATTATTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
29 20 0.61
30 13 0.39
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (30 bp):
ATTTTATAATTTTTTAAAAATTAAAATATA
Found at i:24639470 original size:29 final size:29
Alignment explanation
Indices: 24639396--24639470 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
24639386 AATAATTAAT
* *
24639396 ATTTTA-TAATTTTTTAAAGATTAAATATA
1 ATTTTACT-ATTTATTAAAAATTAAATATA
* *
24639425 ATTTTATTATTTTTTAAAAATTAAAATATA
1 ATTTTACTATTTATTAAAAATT-AAATATA
24639455 ATTTTACTA-TTATTAA
1 ATTTTACTATTTATTAA
24639471 TTTAAAATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
29 25 0.61
30 16 0.39
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (29 bp):
ATTTTACTATTTATTAAAAATTAAATATA
Found at i:24643981 original size:66 final size:66
Alignment explanation
Indices: 24643875--24644000 Score: 225
Period size: 66 Copynumber: 1.9 Consensus size: 66
24643865 AAGAAAGAAA
*
24643875 GACTTGTAGATACTTGATTTTCTTACTAGGAATTTTCAAGTAATCCTAAAAACAGATAGACCAAA
1 GACTTGCAGATACTTGATTTTCTTACTAGGAATTTTCAAGTAATCCTAAAAACAGATAGACCAAA
24643940 T
66 T
* *
24643941 GACTTGCAGATACTTGATTTTCTTACTAGGAATTTTCAAGTAATCCTAGAAATAGATAGA
1 GACTTGCAGATACTTGATTTTCTTACTAGGAATTTTCAAGTAATCCTAAAAACAGATAGA
24644001 GCTAAAAATT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 57 1.00
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (66 bp):
GACTTGCAGATACTTGATTTTCTTACTAGGAATTTTCAAGTAATCCTAAAAACAGATAGACCAAA
T
Found at i:24644870 original size:30 final size:30
Alignment explanation
Indices: 24644817--24644884 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
24644807 TTCCTATAAC
* *
24644817 ATAATTAATGTTAAAATGTTTTCTCA-TACT
1 ATAATTAATGATAAAATGCTTTCTCATTA-T
*
24644847 ATAATTAAT-ATAAACATGCTTTCTTATTAT
1 ATAATTAATGATAAA-ATGCTTTCTCATTAT
24644877 ATAATTAA
1 ATAATTAA
24644885 AGAAGTTGTG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 4 0.12
30 27 0.82
31 2 0.06
ACGTcount: A:0.41, C:0.09, G:0.04, T:0.46
Consensus pattern (30 bp):
ATAATTAATGATAAAATGCTTTCTCATTAT
Found at i:24654146 original size:46 final size:46
Alignment explanation
Indices: 24654093--24654234 Score: 277
Period size: 46 Copynumber: 3.1 Consensus size: 46
24654083 TTTAATGAAC
24654093 TAAGTTTTCTTAATTACTCCATTTAATGATCTCCTGATTATAAATG
1 TAAGTTTTCTTAATTACTCCATTTAATGATCTCCTGATTATAAATG
24654139 TAAGTTTTCTTAATTACTCCATTTAATGATCTCCTGATTATAAATG
1 TAAGTTTTCTTAATTACTCCATTTAATGATCTCCTGATTATAAATG
24654185 TAAGTTTTCTTAATTACTCCATTTAATGATCTCCTGATTATAAATG
1 TAAGTTTTCTTAATTACTCCATTTAATGATCTCCTGATTATAAATG
24654231 -AAGT
1 TAAGT
24654235 AAAGAGTTTT
Statistics
Matches: 96, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
45 4 0.04
46 92 0.96
ACGTcount: A:0.31, C:0.15, G:0.09, T:0.45
Consensus pattern (46 bp):
TAAGTTTTCTTAATTACTCCATTTAATGATCTCCTGATTATAAATG
Found at i:24655315 original size:12 final size:12
Alignment explanation
Indices: 24655298--24655342 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
24655288 ACGGTTTAAA
24655298 AATAATAAT-ATT
1 AATAATAATGA-T
24655310 AATAATAATGAT
1 AATAATAATGAT
*
24655322 AATAATATTGAT
1 AATAATAATGAT
*
24655334 AATGATAAT
1 AATAATAAT
24655343 ACAAATAACT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
12 28 0.97
13 1 0.03
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.38
Consensus pattern (12 bp):
AATAATAATGAT
Found at i:24655325 original size:18 final size:18
Alignment explanation
Indices: 24655302--24655343 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
24655292 TTTAAAAATA
*
24655302 ATAATATTAATAATAATG
1 ATAATAATAATAATAATG
* *
24655320 ATAATAATATTGATAATG
1 ATAATAATAATAATAATG
24655338 ATAATA
1 ATAATA
24655344 CAAATAACTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (18 bp):
ATAATAATAATAATAATG
Found at i:24656260 original size:22 final size:23
Alignment explanation
Indices: 24656235--24656278 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
24656225 TTTCTTTCCC
24656235 TTTTTG-ATTCAAT-TCTCTGTG
1 TTTTTGTATTCAATCTCTCTGTG
24656256 TTTTTGTATTCAATCGTCTCTGT
1 TTTTTGTATTCAATC-TCTCTGT
24656279 TTGCATTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 6 0.30
22 7 0.35
24 7 0.35
ACGTcount: A:0.14, C:0.16, G:0.14, T:0.57
Consensus pattern (23 bp):
TTTTTGTATTCAATCTCTCTGTG
Found at i:24657089 original size:45 final size:45
Alignment explanation
Indices: 24657018--24657545 Score: 229
Period size: 45 Copynumber: 11.7 Consensus size: 45
24657008 TCATTTCAAT
* *
24657018 CTGCTCCACAGCT-ACTTCAGGAAGATAAGATTTGCTATCTTCTAC
1 CTGCTCCACTG-TAACTTCAGGGAGATAAGATTTGCTATCTTCTAC
* * * * * * *
24657063 CTGCTCCCCTGTAACTTTAGGTAGATAAGGTTAGCCATCTT-TAGT
1 CTGCTCCACTGTAACTTCAGGGAGATAAGATTTGCTATCTTCTA-C
* * * * *
24657108 CTACTCCACTGCAGCTTCAGGGAGATAAGATTTG-TAACTTCAAC
1 CTGCTCCACTGTAACTTCAGGGAGATAAGATTTGCTATCTTCTAC
* * * * * * *
24657152 TTGTTCCACTGTAACTTCAGGGAGATAAGGTTAG-TAGCTGT-AAT
1 CTGCTCCACTGTAACTTCAGGGAGATAAGATTTGCTATCT-TCTAC
* * * * * *
24657196 CTGCTCCACTGTAACTTTAGAGAGACAAGATTCGCCATCTTC-AGT
1 CTGCTCCACTGTAACTTCAGGGAGATAAGATTTGCTATCTTCTA-C
* * * * * * *
24657241 CTGCTCCATTGCAACTTCAGGGAGATAAAACTTG-AAACTTCAAC
1 CTGCTCCACTGTAACTTCAGGGAGATAAGATTTGCTATCTTCTAC
* * * ** * * *
24657285 CTGTTCCACTGCAACATCAGGGAGATAAG-TTTTATAACTTCAAT
1 CTGCTCCACTGTAACTTCAGGGAGATAAGATTTGCTATCTTCTAC
* * * * * *
24657329 CTACTCCATTGCAACTTTAGGGAGATACA-ATTTGTAACTTGATAGCCTT-AAT
1 CTGCTCCACTGTAACTTCAGGGAGATA-AGATTTG---C-T-AT---CTTCTAC
* * * * * *
24657381 CTGTTCCACTATAGCCTCAGGGAAATAAGATTTGCTATCTTCAAC
1 CTGCTCCACTGTAACTTCAGGGAGATAAGATTTGCTATCTTCTAC
* * * *
24657426 CTGCTCCACTGCAACTTCA-GGAGATAAG-TTT-ATAGCTT-TAAT
1 CTGCTCCACTGTAACTTCAGGGAGATAAGATTTGCTATCTTCT-AC
* * * * * *
24657468 CTACTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCGAT
1 CTGCTCCACTGTAACTTCAGGGAGATAAGATTTGCTATCTTCTAC
* * *
24657513 CTACTCCATTGTAACTTCAAGGAGATAAGATTT
1 CTGCTCCACTGTAACTTCAGGGAGATAAGATTT
24657546 ATGGCTTTAA
Statistics
Matches: 361, Mismatches: 96, Indels: 52
0.71 0.19 0.10
Matches are distributed among these distances:
42 23 0.06
43 13 0.04
44 143 0.40
45 146 0.40
47 2 0.01
48 1 0.00
49 2 0.01
50 1 0.00
51 1 0.00
52 26 0.07
53 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (45 bp):
CTGCTCCACTGTAACTTCAGGGAGATAAGATTTGCTATCTTCTAC
Found at i:24657162 original size:44 final size:45
Alignment explanation
Indices: 24657012--24657586 Score: 300
Period size: 44 Copynumber: 12.8 Consensus size: 45
24657002 GATTAGTCAT
* * * *
24657012 TTCAA-TCTGCTCCACAGCTACTTCAGGAAGATAAGATTTGCTATC
1 TTCAACTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAAC
* * * * * * * * *
24657057 TTCTAC-CTGCTCCCCTGTAACTTTAGGTAGATAAGGTTAGCCATC
1 TTCAACTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAAC
* * * *
24657102 TT-TAGTCTACTCCACTGCAGCTTCAGGGAGATAAGATTTGTAAC
1 TTCAACTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAAC
* * * * *
24657146 TTCAACT-TGTTCCACTGTAACTTCAGGGAGATAAGGTTAGTAGC
1 TTCAACTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAAC
* * * * * * *
24657190 TGT-AA-TCTGCTCCACTGTAACTTTAGAGAGACAAGATTCGCCATC
1 T-TCAACTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAAC
* * * * *
24657235 TTC-AGTCTGCTCCATTGCAACTTCAGGGAGATAAAACTTGAAAC
1 TTCAACTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAAC
* * * *
24657279 TTCAAC-CTGTTCCACTGCAACATCAGGGAGATAAGTTTTATAAC
1 TTCAACTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAAC
* * *
24657323 TTCAA-TCTACTCCATTGCAACTTTAGGGAGATACA-ATTTGTAAC
1 TTCAACTCTGCTCCACTGCAACTTCAGGGAGATA-AGATTTGTAAC
* * ** * * * *
24657367 TTGATAGCCTTAATCTGTTCCACTATAGCCTCAGGGAAATAAGATTTGCTATC
1 TTCA-A--C----TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAAC
* *
24657420 TTCAAC-CTGCTCCACTGCAACTTCA-GGAGATAAG-TTTATAGC
1 TTCAACTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAAC
* * * * *
24657462 TTTAA-TCTACTCTACTGCAACTTCAGAGAGATAAGATTTGCTATC
1 TTCAACTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAAC
* * * * * * **
24657507 TTCGA-TCTACTCCATTGTAACTTCAAGGAGATAAGATTTATGGC
1 TTCAACTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAAC
* ** *
24657551 TTTAA-TCTGCTCTGCTGCAACTTTAGGGAGATAAGA
1 TTCAACTCTGCTCCACTGCAACTTCAGGGAGATAAGA
24657587 CTTGCCACAA
Statistics
Matches: 396, Mismatches: 109, Indels: 51
0.71 0.20 0.09
Matches are distributed among these distances:
42 24 0.06
43 12 0.03
44 180 0.45
45 147 0.37
50 1 0.00
51 1 0.00
52 25 0.06
53 6 0.02
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (45 bp):
TTCAACTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAAC
Found at i:24657242 original size:133 final size:130
Alignment explanation
Indices: 24657096--24657545 Score: 393
Period size: 133 Copynumber: 3.3 Consensus size: 130
24657086 GATAAGGTTA
* * *
24657096 GCCATCTTTAGTCTACTCCACTGCAGCTTCAGGGAGATAAGATTTGTAACTTCAACTTGTTCCAC
1 GCCATCTTCAGTCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTCAACCTGTTCCAC
* * * *
24657161 TGTAACTTCAGGGAGATAAGGTTAGTAGCTGTAATCTGCTCCACTGTAACTTTAGAGAGACAAGA
66 TGCAACTTCAGGGAGATAAGTTTA-TAGCT-TAATCTACTCCACTGCAACTTTAGAGAGACAAGA
24657226 TT
129 TT
* * * * *
24657228 CGCCATCTTCAGTCTGCTCCATTGCAACTTCAGGGAGATAAAACTTGAAACTTCAACCTGTTCCA
1 -GCCATCTTCAGTCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTCAACCTGTTCCA
* * * *
24657293 CTGCAACATCAGGGAGATAAGTTTTATAACTTCAATCTACTCCATTGCAACTTTAGGGAGATACA
65 CTGCAACTTCAGGGAGATAAG-TTTATAGCTT-AATCTACTCCACTGCAACTTTA--GAGAGACA
24657358 ATTTGTAACTT
126 A---G--A-TT
** * * ** ** * * * * *
24657369 GATAGCCTT-AATCTGTTCCACTATAGCCTCAGGGAAATAAGATTTGCTATCTTCAACCTGCTCC
1 GCCA-TCTTCAGTCTACTCCACTGCAACTTCAGGGAGATAAGATTTG-TAACTTCAACCTGTTCC
* * *
24657433 ACTGCAACTTCA-GGAGATAAGTTTATAGCTTTAATCTACTCTACTGCAACTTCAGAGAGATAAG
64 ACTGCAACTTCAGGGAGATAAGTTTATAGC-TTAATCTACTCCACTGCAACTTTAGAGAGACAAG
24657497 ATTT
128 A-TT
* * * *
24657501 GCTATCTTC-GATCTACTCCATTGTAACTTCAAGGAGATAAGATTT
1 GCCATCTTCAG-TCTACTCCACTGCAACTTCAGGGAGATAAGATTT
24657546 ATGGCTTTAA
Statistics
Matches: 251, Mismatches: 51, Indels: 31
0.75 0.15 0.09
Matches are distributed among these distances:
131 3 0.01
132 33 0.13
133 98 0.39
134 4 0.02
135 8 0.03
137 7 0.03
138 1 0.00
139 26 0.10
140 41 0.16
141 30 0.12
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.32
Consensus pattern (130 bp):
GCCATCTTCAGTCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTCAACCTGTTCCAC
TGCAACTTCAGGGAGATAAGTTTATAGCTTAATCTACTCCACTGCAACTTTAGAGAGACAAGATT
Found at i:24657583 original size:89 final size:87
Alignment explanation
Indices: 24657397--24657591 Score: 264
Period size: 89 Copynumber: 2.2 Consensus size: 87
24657387 CACTATAGCC
* *
24657397 TCAGGGAAATAAGATTTGCTATCTTCAACCTGCTCCACTGCAACTTCAGGAGATAAGTTTATAGC
1 TCAGGGAGATAAGATTTGCTATCTTCAACCTACTCCACTGCAACTTCAGGAGATAAGTTTATAGC
24657462 TTTAATCTACTCTACTGCAACT
66 TTTAATCTACTCTACTGCAACT
* * * * * *
24657484 TCAGAGAGATAAGATTTGCTATCTTCGATCTACTCCATTGTAACTTCAAGGAGATAAGATTTATG
1 TCAGGGAGATAAGATTTGCTATCTTCAACCTACTCCACTGCAACTTC-AGGAGATAAG-TTTATA
* *
24657549 GCTTTAATCTGCTCTGCTGCAACT
64 GCTTTAATCTACTCTACTGCAACT
* *
24657573 TTAGGGAGATAAGACTTGC
1 TCAGGGAGATAAGATTTGC
24657592 CACAATGACT
Statistics
Matches: 93, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
87 40 0.43
88 10 0.11
89 43 0.46
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (87 bp):
TCAGGGAGATAAGATTTGCTATCTTCAACCTACTCCACTGCAACTTCAGGAGATAAGTTTATAGC
TTTAATCTACTCTACTGCAACT
Found at i:24659355 original size:42 final size:43
Alignment explanation
Indices: 24659268--24659423 Score: 131
Period size: 42 Copynumber: 3.7 Consensus size: 43
24659258 AACTCATACA
* * * *
24659268 ATGCCAACATCCTAG-CAAGGTCTTACATGTAATCAAATATCG
1 ATGCCAATATCCCAGACATGGTCTTACATGAAATCAAATATCG
* *
24659310 ATGCCACTATCCCAGACA-GGTTCTTACATGAAATCATATAT-G
1 ATGCCAATATCCCAGACATGG-TCTTACATGAAATCAAATATCG
* * * * *
24659352 ATGCCAATGTCCTAGACATGGTCTTACACGTAAATCTCAA-ATCA
1 ATGCCAATATCCCAGACATGGTCTTACATG-AAATC-AAATATCG
* * *
24659396 ATGCCAATGTCCTAGACGTGGTCTTACA
1 ATGCCAATATCCCAGACATGGTCTTACA
24659424 CGGAATCGCA
Statistics
Matches: 95, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
42 38 0.40
43 29 0.31
44 28 0.29
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (43 bp):
ATGCCAATATCCCAGACATGGTCTTACATGAAATCAAATATCG
Found at i:24659450 original size:44 final size:44
Alignment explanation
Indices: 24659352--24659438 Score: 131
Period size: 44 Copynumber: 2.0 Consensus size: 44
24659342 ATCATATATG
*
24659352 ATGCCAATGTCCTAGACATGGTCTTACACGTAAATCTCAAATCA
1 ATGCCAATGTCCTAGACATGGTCTTACACGTAAATCGCAAATCA
* * *
24659396 ATGCCAATGTCCTAGACGTGGTCTTACACG-GAATCGCATATCA
1 ATGCCAATGTCCTAGACATGGTCTTACACGTAAATCGCAAATCA
24659439 GAATCCTATG
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
43 10 0.26
44 29 0.74
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (44 bp):
ATGCCAATGTCCTAGACATGGTCTTACACGTAAATCGCAAATCA
Found at i:24664944 original size:24 final size:24
Alignment explanation
Indices: 24664885--24665002 Score: 102
Period size: 24 Copynumber: 5.0 Consensus size: 24
24664875 GAGTCATGGT
*
24664885 TGGTAAGCTCCTACTGAGCTGATAAA
1 TGGTAAGCT-CTATTGAGCTGA-AAA
** *
24664911 CAGTAAGCTCTATTGAACTGAAAA
1 TGGTAAGCTCTATTGAGCTGAAAA
*
24664935 TGGTAAGCTCTATTGAGCTGAACA
1 TGGTAAGCTCTATTGAGCTGAAAA
*
24664959 --GTAAGCTCT-TTCGAGTTG--AA
1 TGGTAAGCTCTATT-GAGCTGAAAA
*
24664979 TCGGTAAGCTCTAATGAGCTGAAA
1 T-GGTAAGCTCTATTGAGCTGAAA
24665003 CAGTAAGCTC
Statistics
Matches: 73, Mismatches: 12, Indels: 15
0.73 0.12 0.15
Matches are distributed among these distances:
20 1 0.01
21 2 0.03
22 14 0.19
23 14 0.19
24 24 0.33
25 11 0.15
26 7 0.10
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (24 bp):
TGGTAAGCTCTATTGAGCTGAAAA
Found at i:24664989 original size:23 final size:22
Alignment explanation
Indices: 24664886--24665013 Score: 96
Period size: 23 Copynumber: 5.5 Consensus size: 22
24664876 AGTCATGGTT
*
24664886 GGTAAGCTCCTACTGAGCTGATAAAC
1 GGTAAGCT-CTATTGAGCTG---AAC
* * *
24664912 AGTAAGCTCTATTGAACTGAAAAT
1 GGTAAGCTCTATTGAGCTG--AAC
24664936 GGTAAGCTCTATTGAGCTGAAC
1 GGTAAGCTCTATTGAGCTGAAC
* *
24664958 AGTAAGCTCT-TTCGAGTTGAATC
1 GGTAAGCTCTATT-GAGCTGAA-C
*
24664981 GGTAAGCTCTAATGAGCTGAAAC
1 GGTAAGCTCTATTGAGCTG-AAC
*
24665004 AGTAAGCTCT
1 GGTAAGCTCT
24665014 TACGAGCTAT
Statistics
Matches: 84, Mismatches: 14, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
21 2 0.02
22 18 0.21
23 25 0.30
24 23 0.27
25 9 0.11
26 7 0.08
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (22 bp):
GGTAAGCTCTATTGAGCTGAAC
Found at i:24665005 original size:46 final size:46
Alignment explanation
Indices: 24664885--24665021 Score: 154
Period size: 46 Copynumber: 2.9 Consensus size: 46
24664875 GAGTCATGGT
* *
24664885 TGGTAAGCTCCTACTGAGCTGATAAACAGTAAGCTCTATT-GAACTGAAAA
1 TGGTAAGCT-CTAATGAGCTG--AAACAGTAAGCTCT-TTCGAGCTG-AAA
* *
24664935 TGGTAAGCTCTATTGAGCTG-AACAGTAAGCTCTTTCGAGTTG-AA
1 TGGTAAGCTCTAATGAGCTGAAACAGTAAGCTCTTTCGAGCTGAAA
*
24664979 TCGGTAAGCTCTAATGAGCTGAAACAGTAAGCTCTTACGAGCT
1 T-GGTAAGCTCTAATGAGCTGAAACAGTAAGCTCTTTCGAGCT
24665022 ATGGTGAGTC
Statistics
Matches: 78, Mismatches: 6, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
44 3 0.04
45 20 0.26
46 36 0.46
49 10 0.13
50 9 0.12
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (46 bp):
TGGTAAGCTCTAATGAGCTGAAACAGTAAGCTCTTTCGAGCTGAAA
Found at i:24665168 original size:38 final size:38
Alignment explanation
Indices: 24665117--24665195 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
24665107 TCAAACACGG
24665117 CTTGGTAACACATACAATATAACAATAAGACATTTATA
1 CTTGGTAACACATACAATATAACAATAAGACATTTATA
*
24665155 CTTGGTAACACATACAATATAACAATAAGACGTTTATA
1 CTTGGTAACACATACAATATAACAATAAGACATTTATA
24665193 CTT
1 CTT
24665196 TAAATATCTC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.30
Consensus pattern (38 bp):
CTTGGTAACACATACAATATAACAATAAGACATTTATA
Found at i:24665211 original size:20 final size:20
Alignment explanation
Indices: 24665188--24665252 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
24665178 AATAAGACGT
24665188 TTATACTTTAAATATCTCAA
1 TTATACTTTAAATATCTCAA
* *** *
24665208 TTATAAAC-AT-AATAAGACAT
1 TTAT--ACTTTAAATATCTCAA
24665228 TTATACTTTAAATATCTCAA
1 TTATACTTTAAATATCTCAA
24665248 TTATA
1 TTATA
24665253 AACATTCTTT
Statistics
Matches: 31, Mismatches: 10, Indels: 8
0.63 0.20 0.16
Matches are distributed among these distances:
18 2 0.06
19 1 0.03
20 25 0.81
21 1 0.03
22 2 0.06
ACGTcount: A:0.45, C:0.12, G:0.02, T:0.42
Consensus pattern (20 bp):
TTATACTTTAAATATCTCAA
Found at i:24665231 original size:40 final size:40
Alignment explanation
Indices: 24665178--24665257 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
24665168 ACAATATAAC
*
24665178 AATAAGACGTTTATACTTTAAATATCTCAATTATAAACAT
1 AATAAGACATTTATACTTTAAATATCTCAATTATAAACAT
24665218 AATAAGACATTTATACTTTAAATATCTCAATTATAAACAT
1 AATAAGACATTTATACTTTAAATATCTCAATTATAAACAT
24665258 TCTTTTCAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.46, C:0.12, G:0.04, T:0.38
Consensus pattern (40 bp):
AATAAGACATTTATACTTTAAATATCTCAATTATAAACAT
Found at i:24669113 original size:49 final size:47
Alignment explanation
Indices: 24668962--24669284 Score: 432
Period size: 47 Copynumber: 6.7 Consensus size: 47
24668952 TTAGGATTCT
* * * *
24668962 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGACCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCA
* *
24669009 ATGTGATGAATGTGAAAGTGTATATATGTGGTAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCA
*
24669056 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGTGGCAA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA--TGGCCA
*
24669105 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCA
*
24669154 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGTGGCAA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA--TGGCCA
* * * *
24669203 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCA
* * *
24669250 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
24669285 TGCCGAAGGG
Statistics
Matches: 248, Mismatches: 21, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
46 1 0.00
47 137 0.55
49 89 0.36
51 21 0.08
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCA
Found at i:24669161 original size:98 final size:96
Alignment explanation
Indices: 24668962--24669284 Score: 472
Period size: 98 Copynumber: 3.4 Consensus size: 96
24668952 TTAGGATTCT
* * * **
24668962 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAA--TGACCGATGTGATGAATGTGA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGTGGCAAATGTGATGAATGTGA
*
24669024 AAGTGTATATATGTGGTAAGGCCTAATGGCCG
65 AAGTGTATATATGTGATAAGGCCTAATGGCCG
24669056 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGTGGCAAATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGTGGCAAATGTGATGAATGTGAA
24669121 AGTGTATATATATGTGATAAGGCCTAATGGCCG
66 AGTG--TATATATGTGATAAGGCCTAATGGCCG
24669154 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGTGGCAAATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGTGGCAAATGTGATGAATGTGAA
* * * * *
24669219 AGTGTATATATGTGACAGGGCCGAGTGGCCA
66 AGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
24669250 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
24669285 TGCCGAAGGG
Statistics
Matches: 210, Mismatches: 14, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
93 1 0.00
94 37 0.18
96 77 0.37
98 95 0.45
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGTGGCAAATGTGATGAATGTGAA
AGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:24669459 original size:37 final size:37
Alignment explanation
Indices: 24669403--24669481 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
24669393 CCGAGCTCTC
* *
24669403 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
24669440 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
24669477 AAGAC
1 AAGAC
24669482 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:24679326 original size:15 final size:15
Alignment explanation
Indices: 24679286--24679331 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
24679276 ACGGTTTAAA
24679286 AATAATAAT-ATTAAT
1 AATAATAATGA-TAAT
*
24679301 AATAATGATGATAAT
1 AATAATAATGATAAT
*
24679316 ATTAATAATGATAAT
1 AATAATAATGATAAT
24679331 A
1 A
24679332 CAAATAATAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (15 bp):
AATAATAATGATAAT
Found at i:24679713 original size:59 final size:59
Alignment explanation
Indices: 24679636--24679753 Score: 236
Period size: 59 Copynumber: 2.0 Consensus size: 59
24679626 ATAATCCCCA
24679636 CCCTCCAAAACACGCAGCTTCAAGGTGGACCAATTTGTACATCGAAATAAATTATAGGG
1 CCCTCCAAAACACGCAGCTTCAAGGTGGACCAATTTGTACATCGAAATAAATTATAGGG
24679695 CCCTCCAAAACACGCAGCTTCAAGGTGGACCAATTTGTACATCGAAATAAATTATAGGG
1 CCCTCCAAAACACGCAGCTTCAAGGTGGACCAATTTGTACATCGAAATAAATTATAGGG
24679754 AAAAAATTAA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.22
Consensus pattern (59 bp):
CCCTCCAAAACACGCAGCTTCAAGGTGGACCAATTTGTACATCGAAATAAATTATAGGG
Found at i:24680213 original size:7 final size:7
Alignment explanation
Indices: 24680203--24680240 Score: 76
Period size: 7 Copynumber: 5.4 Consensus size: 7
24680193 GAGAAAAGAG
24680203 AAAAATA
1 AAAAATA
24680210 AAAAATA
1 AAAAATA
24680217 AAAAATA
1 AAAAATA
24680224 AAAAATA
1 AAAAATA
24680231 AAAAATA
1 AAAAATA
24680238 AAA
1 AAA
24680241 TGAACACCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (7 bp):
AAAAATA
Found at i:24684153 original size:28 final size:28
Alignment explanation
Indices: 24684106--24684170 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
24684096 AAATTAACCC
*
24684106 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
24684134 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
24684162 TAGGGGTAT
1 TAGGGGTAT
24684171 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:24685257 original size:12 final size:13
Alignment explanation
Indices: 24685238--24685270 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
24685228 GGGTTCGGCT
24685238 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
24685251 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
24685263 ATGGAGAA
1 ATGGAGAA
24685271 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:24690671 original size:10 final size:10
Alignment explanation
Indices: 24690656--24690680 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
24690646 ACAGACAGAT
24690656 AATTCAGAAA
1 AATTCAGAAA
24690666 AATTCAGAAA
1 AATTCAGAAA
24690676 AATTC
1 AATTC
24690681 GGAATGCCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.56, C:0.12, G:0.08, T:0.24
Consensus pattern (10 bp):
AATTCAGAAA
Found at i:24691793 original size:28 final size:29
Alignment explanation
Indices: 24691720--24691807 Score: 94
Period size: 28 Copynumber: 3.1 Consensus size: 29
24691710 AGCATGGCTG
* * * *
24691720 CCAGATACAGA-AA-ATGTGACAGAGTCA
1 CCAGATACAGATAATTTGTGGCATAGCCA
*
24691747 CCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAATTTGTGGCA-TAGCCA
24691776 CCAGA-ACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAATTTGTGGCATAGCCA
24691804 CCAG
1 CCAG
24691808 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
27 12 0.24
28 25 0.49
29 14 0.27
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (29 bp):
CCAGATACAGATAATTTGTGGCATAGCCA
Found at i:24691960 original size:28 final size:28
Alignment explanation
Indices: 24691913--24691977 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
24691903 AAATTAACCC
*
24691913 TAGGGGTATAAAGGCCATTTAGCATACA
1 TAGGGGTATAAAGGCAATTTAGCATACA
* * *
24691941 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGCAATTTAGCATACA
24691969 TAGGGGTAT
1 TAGGGGTAT
24691978 TCTAGTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.32, C:0.09, G:0.28, T:0.31
Consensus pattern (28 bp):
TAGGGGTATAAAGGCAATTTAGCATACA
Found at i:24696322 original size:27 final size:27
Alignment explanation
Indices: 24696292--24696345 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
24696282 TCATACAACC
* *
24696292 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
24696319 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
24696346 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:24699403 original size:42 final size:42
Alignment explanation
Indices: 24699356--24699445 Score: 126
Period size: 42 Copynumber: 2.1 Consensus size: 42
24699346 AAAATGAGTT
* * * * *
24699356 TGCTCACACAATCTGTTGTTCGGAATGTAAGCTACATGATGC
1 TGCTCACACAAGCTATTGGTCAGAATATAAGCTACATGATGC
*
24699398 TGCTCACACAAGCTATTGGTCAGAATATAAGCTACATGGTGC
1 TGCTCACACAAGCTATTGGTCAGAATATAAGCTACATGATGC
24699440 TGCTCA
1 TGCTCA
24699446 TAGAAGCTGT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (42 bp):
TGCTCACACAAGCTATTGGTCAGAATATAAGCTACATGATGC
Found at i:24701624 original size:44 final size:44
Alignment explanation
Indices: 24701575--24701665 Score: 110
Period size: 44 Copynumber: 2.1 Consensus size: 44
24701565 GTAGGTCAAA
* *
24701575 TAATATTATAACAACCTATACTAGTAAGAGTTTAAGTGGGAAAC
1 TAATATTAAAACAACCTATACTAATAAGAGTTTAAGTGGGAAAC
* * * * * *
24701619 TAATATTAAAATAACTTATCCTAATCAGAGTTTGAGTGGTAAAC
1 TAATATTAAAACAACCTATACTAATAAGAGTTTAAGTGGGAAAC
24701663 TAA
1 TAA
24701666 AAATTGAGTT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32
Consensus pattern (44 bp):
TAATATTAAAACAACCTATACTAATAAGAGTTTAAGTGGGAAAC
Found at i:24720471 original size:51 final size:50
Alignment explanation
Indices: 24720390--24720490 Score: 184
Period size: 51 Copynumber: 2.0 Consensus size: 50
24720380 AGAACTATGC
24720390 TAATCAATTGTAGGACATCGGAAGACATCTCAGTAGCAGTCGTCGCGAAT
1 TAATCAATTGTAGGACATCGGAAGACATCTCAGTAGCAGTCGTCGCGAAT
*
24720440 NTAATCAATTGTAGGACATCGGAAGAGATCTCAGTAGCAGTCGTCGCGAAT
1 -TAATCAATTGTAGGACATCGGAAGACATCTCAGTAGCAGTCGTCGCGAAT
24720491 CAGGTGTGTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (50 bp):
TAATCAATTGTAGGACATCGGAAGACATCTCAGTAGCAGTCGTCGCGAAT
Found at i:24722911 original size:20 final size:20
Alignment explanation
Indices: 24722886--24722939 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
24722876 TACGGCCTGC
24722886 CCACACGGGCGTGTCCCAAA
1 CCACACGGGCGTGTCCCAAA
*
24722906 CCACACGGGCATGTCCCAAA
1 CCACACGGGCGTGTCCCAAA
*
24722926 CCACACAGGCGTGT
1 CCACACGGGCGTGT
24722940 GACCCCAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.26, C:0.39, G:0.24, T:0.11
Consensus pattern (20 bp):
CCACACGGGCGTGTCCCAAA
Found at i:24726332 original size:50 final size:50
Alignment explanation
Indices: 24726274--24726373 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
24726264 TGAAATATTT
24726274 GAAATTATATATATATAAAAGAAGATGAATAGAAAAAAAGGCAAAAACTA
1 GAAATTATATATATATAAAAGAAGATGAATAGAAAAAAAGGCAAAAACTA
24726324 GAAATTATATATATATAAAAGAAGATGAATAGAAAAAAAGGCAAAAACTA
1 GAAATTATATATATATAAAAGAAGATGAATAGAAAAAAAGGCAAAAACTA
24726374 TTTAATTTTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.62, C:0.04, G:0.14, T:0.20
Consensus pattern (50 bp):
GAAATTATATATATATAAAAGAAGATGAATAGAAAAAAAGGCAAAAACTA
Done.