Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78745976
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 2640508 characters in sequence are not A, C, G, or T
File 74 of 235
Found at i:25478943 original size:51 final size:49
Alignment explanation
Indices: 25478763--25479002 Score: 241
Period size: 49 Copynumber: 4.8 Consensus size: 49
25478753 AAGGCTATCT
* * * * *
25478763 GGTACGCATAGTAGCCTGAACTTTGTACTACACATGCGACCAATTATTC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATTC
* * * **
25478812 AGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCA-TC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGAC-CAATTATTC
* * * * *
25478861 TGATACACGTAATAGCCTGCACTTAGTACTACGCACGTGATCGAAGTTA-TC
1 -GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATTC
* * * *
25478912 GGGTACGCATAGTAGCCTGCACTTAGAACTACACATGCGACCAATTATTC
1 -GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATTC
*
25478962 GGTACACCTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
25479003 TCACAATAGA
Statistics
Matches: 154, Mismatches: 32, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
49 74 0.48
50 45 0.29
51 35 0.23
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATTC
Found at i:25478998 original size:100 final size:101
Alignment explanation
Indices: 25478820--25479000 Score: 249
Period size: 100 Copynumber: 1.8 Consensus size: 101
25478810 TCAGTACACG
* * * *
25478820 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAATAGCCTGCACTT
1 TAGTAGCCTGCACTTAGAACTACACACGCGACTCAACCATCTGATACACCTAATAGCCTGCACTT
*
25478885 AGTACTACGCACGTGATCGAAGTTATCGGGTACGCA
66 AGTACTACACACGTGATCGAAGTTATCGGGTACGCA
* ** * *
25478921 TAGTAGCCTGCACTTAGAACTACACATGCGAC-CAATTAT-TCGGTACACCTAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGAACTACACACGCGACTCAACCATCT-GATACACCTAATAGCCTGCACT
25478984 TAGTACTACACACGTGA
65 TAGTACTACACACGTGA
25479001 CCTCACAATA
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
99 1 0.01
100 39 0.57
101 29 0.42
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGAACTACACACGCGACTCAACCATCTGATACACCTAATAGCCTGCACTT
AGTACTACACACGTGATCGAAGTTATCGGGTACGCA
Found at i:25495827 original size:51 final size:49
Alignment explanation
Indices: 25495766--25495880 Score: 124
Period size: 49 Copynumber: 2.3 Consensus size: 49
25495756 CATGCGACCA
* * * *
25495766 AGTACTACACACGTGATCGAAGTTA-TCGGGTACGCATAGTAGCCTGCGCTT
1 AGTACTACACACGTGA-CCAA-TTATTC-GGAACACATAGTAGCCTGCACTT
* * *
25495817 AGTACTACACATGCGACCAATTATTCGGAACACGTAGTAGCCTGCACTT
1 AGTACTACACACGTGACCAATTATTCGGAACACATAGTAGCCTGCACTT
*
25495866 AGTACAACACACGTG
1 AGTACTACACACGTG
25495881 TCCTCACAAT
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
49 34 0.64
50 5 0.09
51 14 0.26
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (49 bp):
AGTACTACACACGTGACCAATTATTCGGAACACATAGTAGCCTGCACTT
Found at i:25498923 original size:81 final size:81
Alignment explanation
Indices: 25498788--25498949 Score: 324
Period size: 81 Copynumber: 2.0 Consensus size: 81
25498778 GTTATCATAC
25498788 ACACAGGGACTGTAAAAGAATTATTTATGAAATTAATTGTAAAACACTTTGGCGAGGTAAAAATA
1 ACACAGGGACTGTAAAAGAATTATTTATGAAATTAATTGTAAAACACTTTGGCGAGGTAAAAATA
25498853 ATTTGGTTTTAAAAGG
66 ATTTGGTTTTAAAAGG
25498869 ACACAGGGACTGTAAAAGAATTATTTATGAAATTAATTGTAAAACACTTTGGCGAGGTAAAAATA
1 ACACAGGGACTGTAAAAGAATTATTTATGAAATTAATTGTAAAACACTTTGGCGAGGTAAAAATA
25498934 ATTTGGTTTTAAAAGG
66 ATTTGGTTTTAAAAGG
25498950 TGGTCAAAAA
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.42, C:0.07, G:0.20, T:0.31
Consensus pattern (81 bp):
ACACAGGGACTGTAAAAGAATTATTTATGAAATTAATTGTAAAACACTTTGGCGAGGTAAAAATA
ATTTGGTTTTAAAAGG
Found at i:25528488 original size:48 final size:48
Alignment explanation
Indices: 25528417--25528731 Score: 357
Period size: 48 Copynumber: 6.6 Consensus size: 48
25528407 TGAGATTCTA
* * *
25528417 TGTAAGACCATGTCTGGGACATGGAAACGGCGATGATATATGTGCTTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCTAG
* *
25528465 TGTAAGACCATGTCGGGGACATGGCATCGGCGATGATATGTGTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCTAG
* * *
25528513 TGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCTAG
* * * * *
25528561 TGTAAGACCATATCTAGGACATGGCATCAGTGATGATATATGTACCT-G
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGT-GCTAG
* * * * * *
25528609 TGTAAGACCATGTCTGAGACATGGGATCAGAGATGATATGTGTGATAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCTAG
* * * * *
25528657 TGTAAGACCATGTTTGGGACATGGCATCGACAATGATATGTG-GATTCA-
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTG-CT-AG
*
25528705 TGTAAGACCATGTCGGGGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
25528732 TGGTACTTAT
Statistics
Matches: 229, Mismatches: 34, Indels: 8
0.85 0.13 0.03
Matches are distributed among these distances:
47 2 0.01
48 225 0.98
49 2 0.01
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCTAG
Found at i:25528708 original size:144 final size:144
Alignment explanation
Indices: 25528410--25528731 Score: 414
Period size: 144 Copynumber: 2.2 Consensus size: 144
25528400 TGCTAAATGA
* * * * * *
25528410 GATTCTATGTAAGACCATGTCTGGGACATGGAAACGGCGATGATATATGTGCTTGTGTAAGACCA
1 GATTCAATGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATATGTACCTGTGTAAGACCA
* * * *
25528475 TGTCGGGGACATGGCATCGGCGATGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCAT
66 TGTCGGAGACATGGCATCAGAGATGATATGTGTGATAGTGTAAGACCATGTCTGGGACATGGCAT
***
25528540 CGGTGATGATATAT
131 CGACAATGATATAT
* * * *
25528554 G-TGCCAATGTAAGACCATATCTAGGACATGGCATCAGTGATGATATATGTACCTGTGTAAGACC
1 GAT-TCAATGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATATGTACCTGTGTAAGACC
* * *
25528618 ATGTCTGAGACATGGGATCAGAGATGATATGTGTGATAGTGTAAGACCATGTTTGGGACATGGCA
65 ATGTCGGAGACATGGCATCAGAGATGATATGTGTGATAGTGTAAGACCATGTCTGGGACATGGCA
*
25528683 TCGACAATGATATGT
130 TCGACAATGATATAT
*
25528698 GGATTC-ATGTAAGACCATGTCGGGGACATGGCAT
1 -GATTCAATGTAAGACCATGTCTGGGACATGGCAT
25528732 TGGTACTTAT
Statistics
Matches: 150, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
143 1 0.01
144 146 0.97
145 2 0.01
146 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (144 bp):
GATTCAATGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATATGTACCTGTGTAAGACCA
TGTCGGAGACATGGCATCAGAGATGATATGTGTGATAGTGTAAGACCATGTCTGGGACATGGCAT
CGACAATGATATAT
Found at i:25533518 original size:39 final size:40
Alignment explanation
Indices: 25533423--25533684 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
25533413 TTGAATGATG
*
25533423 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
25533461 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
25533502 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
25533541 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
25533580 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
25533619 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
25533658 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
25533685 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:25540941 original size:39 final size:40
Alignment explanation
Indices: 25540846--25541107 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
25540836 TTGAATGATG
*
25540846 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
25540884 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
25540925 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
25540964 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
25541003 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
25541042 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
25541081 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
25541108 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:25547829 original size:34 final size:34
Alignment explanation
Indices: 25547791--25547857 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
25547781 TGTGAATGAA
*
25547791 AAATATGGGTTCGTATAAGAGGGAAAATGATTCT
1 AAATATGGGCTCGTATAAGAGGGAAAATGATTCT
25547825 AAATATGGGCTCGTATAAGAGGGAAAATGATTC
1 AAATATGGGCTCGTATAAGAGGGAAAATGATTC
25547858 GGCTAGGGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.39, C:0.07, G:0.27, T:0.27
Consensus pattern (34 bp):
AAATATGGGCTCGTATAAGAGGGAAAATGATTCT
Found at i:25548386 original size:48 final size:48
Alignment explanation
Indices: 25548315--25548677 Score: 314
Period size: 48 Copynumber: 7.6 Consensus size: 48
25548305 TGAGATTCTA
25548315 TGTAAGACCATGTCTGGGACATGGCATCATGGATGATATATGTGCCTG
1 TGTAAGACCATGTCTGGGACATGGCATCATGGATGATATATGTGCCTG
* *
25548363 TGTAAGACCATGTCCGGGACATGGCATCA-GAGATGATATGTGTG-CTAG
1 TGTAAGACCATGTCTGGGACATGGCATCATG-GATGATATATGTGCCT-G
*
25548411 TGTAAGACCATGTCTGGGACATGGCATC--GGCTATGATATATGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCATGG--ATGATATATGTGCCTG
* * * ** * ** *
25548459 TGTAAGACCATGTCTAGGCCCTGGCATCAAAGATGATACATGCACTTG
1 TGTAAGACCATGTCTGGGACATGGCATCATGGATGATATATGTGCCTG
* * * * *
25548507 TGTAGGACCATGTCTGGGACATGGCATCGAT-TATGGTATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATC-ATGGATGATATATGTGCCTG
* * ** *
25548555 TGTAAGACCATGTCTGGGACATGGCATC-GGCGATGATATGTG-GATTCA
1 TGTAAGACCATGTCTGGGACATGGCATCATG-GATGATATATGTGCCT-G
* * ** *
25548603 TGTAAGACCATGTCGGGGACATGGCAT--TGG-CGATGATATGTGGATTCA
1 TGTAAGACCATGTCTGGGACATGGCATCATGGATGAT-ATATGT-GCCT-G
*
25548651 TGTAAGACCATGTCGGGGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
25548678 TGGTACTTAT
Statistics
Matches: 262, Mismatches: 39, Indels: 28
0.80 0.12 0.09
Matches are distributed among these distances:
45 3 0.01
46 6 0.02
47 6 0.02
48 244 0.93
49 2 0.01
50 1 0.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCATGGATGATATATGTGCCTG
Found at i:25548484 original size:96 final size:95
Alignment explanation
Indices: 25548315--25548677 Score: 403
Period size: 96 Copynumber: 3.8 Consensus size: 95
25548305 TGAGATTCTA
* *
25548315 TGTAAGACCATGTCTGGGACATGGCATCATGG--ATGATATATGTGCCTGTGTAAGACCATGTCC
1 TGTAAGACCATGTCTGGGACATGGCATC--GGCTATGATATATGTGCCAGTGTAAGACCATGTCT
25548378 GGGACATGGCATCAGAGATGATATGTGTGCTAG
64 GGGACATGGCATCAGAGATGATATGTG-GCTAG
*
25548411 TGTAAGACCATGTCTGGGACATGGCATCGGCTATGATATATGTGCCAGTGTAAGACCATGTCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCTATGATATATGTGCCAGTGTAAGACCATGTCTGG
* * * ** * *
25548476 GCCCTGGCATCAAAGATGATACATGCACTTG
66 GACATGGCATCAGAGATGATATGTG-GCTAG
* ** * *
25548507 TGTAGGACCATGTCTGGGACATGGCATCGATTATGGTATGTGTGCCAGTGTAAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCTATGATATATGTGCCAGTGTAAGACCATGTCTGG
* * *
25548572 GACATGGCATCGGCGATGATATGTGGATTCA-
66 GACATGGCATCAGAGATGATATGTGG-CT-AG
* * * * * *
25548603 TGTAAGACCATGTCGGGGACATGGCATTGGCGATGATATGTG-GATTCA-TGTAAGACCATGTCG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCTATGATATATGTG--CCAGTGTAAGACCATGTCT
25548666 GGGACATGGCAT
64 GGGACATGGCAT
25548678 TGGTACTTAT
Statistics
Matches: 225, Mismatches: 36, Indels: 12
0.82 0.13 0.04
Matches are distributed among these distances:
94 2 0.01
95 1 0.00
96 220 0.98
97 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (95 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCTATGATATATGTGCCAGTGTAAGACCATGTCTGG
GACATGGCATCAGAGATGATATGTGGCTAG
Found at i:25548638 original size:144 final size:141
Alignment explanation
Indices: 25548308--25548677 Score: 413
Period size: 144 Copynumber: 2.6 Consensus size: 141
25548298 TGCTAAATGA
** *
25548308 GATTCTATGTAAGACCATGTCTGGGACATGGCATCATGGATGATATATGTGCCTGTGTAAGACCA
1 GATTC-ATGTAAGACCATGTCTGGGACATGGCAT--TGGATGATATATGCACTTGTGTAAGACCA
*
25548373 TGTCCGGGACATGGCATCAGAGATGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCAT
63 TGTCCGGGACATGGCATCAGAGATGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCAT
*
25548438 CGGCTATGATATAT
128 CGGCGATGATATAT
* * * * ** * *
25548452 G-TGCCAGTGTAAGACCATGTCTAGGCCCTGGCATCAAAGATGATACATGCACTTGTGTAGGACC
1 GAT-TCA-TGTAAGACCATGTCTGGGACATGGCAT--TGGATGATATATGCACTTGTGTAAGACC
* * *
25548516 ATGTCTGGGACATGGCATC-GATTATGGTATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGC
62 ATGTCCGGGACATGGCATCAGA-GATGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGC
*
25548580 ATCGGCGATGATATGT
126 ATCGGCGATGATATAT
* * * *
25548596 GGATTCATGTAAGACCATGTCGGGGACATGGCATTGGCGATGATATGTGGA-TTCATGTAAGACC
1 -GATTCATGTAAGACCATGTCTGGGACATGGCATT-G-GATGATATATGCACTT-GTGTAAGACC
*
25548660 ATGTCGGGGACATGGCAT
62 ATGTCCGGGACATGGCAT
25548678 TGGTACTTAT
Statistics
Matches: 188, Mismatches: 30, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
143 6 0.03
144 178 0.95
145 3 0.02
146 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (141 bp):
GATTCATGTAAGACCATGTCTGGGACATGGCATTGGATGATATATGCACTTGTGTAAGACCATGT
CCGGGACATGGCATCAGAGATGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
CGATGATATAT
Found at i:25553422 original size:14 final size:14
Alignment explanation
Indices: 25553403--25553429 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
25553393 AAACTTGATT
25553403 TGTTCTTAATTATG
1 TGTTCTTAATTATG
25553417 TGTTCTTAATTAT
1 TGTTCTTAATTAT
25553430 TGCTTTAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.11, T:0.59
Consensus pattern (14 bp):
TGTTCTTAATTATG
Found at i:25558932 original size:20 final size:20
Alignment explanation
Indices: 25558907--25558945 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
25558897 AGAGTAAACG
25558907 TACCGAATAATTAGCATACT
1 TACCGAATAATTAGCATACT
*
25558927 TACCGAGTAATTAGCATAC
1 TACCGAATAATTAGCATAC
25558946 ATCCATAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (20 bp):
TACCGAATAATTAGCATACT
Found at i:25564689 original size:40 final size:40
Alignment explanation
Indices: 25564619--25564765 Score: 208
Period size: 40 Copynumber: 3.7 Consensus size: 40
25564609 GATGATAACA
* * *
25564619 AAGGCATTTGTGCTAGTGACTA-ATTTCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCG
25564659 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
* *
25564699 AAGGCATTGGTGCGAGCTACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
*
25564739 AAGGCATTTGAGCGAG-TAGCTATATCC
1 AAGGCATTTGTGCGAGTTA-CTATATCC
25564766 AGTTAAATCC
Statistics
Matches: 98, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
39 2 0.02
40 95 0.97
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
Found at i:25575164 original size:40 final size:39
Alignment explanation
Indices: 25575120--25575384 Score: 320
Period size: 40 Copynumber: 6.7 Consensus size: 39
25575110 GCCAATAGCT
* * *
25575120 CAAATGCCTTCGGGACTTAGCCTGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAGCTCGCA
* *
25575160 CAAATGCCTTCGGGACTTAGCCCGGTATAATAAG-TCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGT-AGCTCGCA
25575199 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAGCTCGCA
*
25575239 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAGCTCGCA
* *
25575279 CAAATGCCTTCAGGACTTAGCCCGGAATTAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAGCTCGCA
* * * * *
25575319 CAAATGCCTTCGGGACTTAGCTCGGAATTAGCCA-CTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAG-TAGCTCGCA
25575359 CAAATG-CTCTCGGGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
25575385 TATCATCCGA
Statistics
Matches: 203, Mismatches: 16, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
39 38 0.19
40 164 0.81
41 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAGCTCGCA
Found at i:25583697 original size:40 final size:40
Alignment explanation
Indices: 25583629--25583791 Score: 215
Period size: 40 Copynumber: 4.1 Consensus size: 40
25583619 GATGATAACA
* *
25583629 AAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCG
25583669 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
* * *
25583709 AAGGCATTGGTGCTAGCTACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
* * *
25583749 AAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATCCCG
1 AAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCG
25583788 AAGG
1 AAGG
25583792 TACTTGGTTT
Statistics
Matches: 111, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
39 16 0.14
40 94 0.85
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
Found at i:25587155 original size:40 final size:40
Alignment explanation
Indices: 25587083--25587267 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
25587073 GCTACTCGTT
*
25587083 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
25587123 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
25587163 CCAATGCCTTCGGG-CTTAGCCTGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
25587202 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
25587243 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25587268 CATCATTCGA
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 78 0.63
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:25587251 original size:79 final size:80
Alignment explanation
Indices: 25587083--25587263 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
25587073 GCTACTCGTT
* * *
25587083 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
1 CAAA-GCCTTCGGGACTTAGCCTGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
* *
25587147 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* ** *
25587164 CAATGCCTTCGGG-CTTAGCCTGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCTGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCAG
*
25587227 ATATAGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
25587243 CAAAGCCTTCGGGACTTAGCC
1 CAAAGCCTTCGGGACTTAGCC
25587264 CGGACATCAT
Statistics
Matches: 85, Mismatches: 11, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
78 3 0.04
79 58 0.68
80 21 0.25
81 3 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCTGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGA
TATAGTAACTAGCAC
Found at i:25590070 original size:37 final size:37
Alignment explanation
Indices: 25590020--25590094 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
25590010 TCTAAGGAAG
*
25590020 TGATCAAGAGAACCACATCTGAAACATGCACCGCTCT
1 TGATCAAGAGAACCACATCTGAAACACGCACCGCTCT
25590057 TGATCAAGAGAACCACATCTGAAACACGCACCGCTCT
1 TGATCAAGAGAACCACATCTGAAACACGCACCGCTCT
25590094 T
1 T
25590095 CATTCGACAC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.35, C:0.31, G:0.16, T:0.19
Consensus pattern (37 bp):
TGATCAAGAGAACCACATCTGAAACACGCACCGCTCT
Found at i:25601370 original size:68 final size:68
Alignment explanation
Indices: 25601298--25601445 Score: 160
Period size: 64 Copynumber: 2.2 Consensus size: 68
25601288 TATCATGTGC
* * * *
25601298 ACAAGAGAGCTACAAGACATTATTATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTACAAGACA-TA-TATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
25601361 TGTAG
64 TGTAG
* ** * *
25601366 ACAAGAGAGCT--ATGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCAT
1 ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCAT
25601429 GTAG
65 GTAG
25601433 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
25601446 GAGATAAATT
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
64 25 0.38
65 2 0.03
66 5 0.08
67 23 0.35
68 11 0.17
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (68 bp):
ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATG
TAG
Found at i:25601402 original size:64 final size:64
Alignment explanation
Indices: 25601298--25601505 Score: 197
Period size: 67 Copynumber: 3.2 Consensus size: 64
25601288 TATCATGTGC
* *
25601298 ACAAGAGAGCTACAAGACATTATTATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTAC--GAGA-TA-TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATG
25601363 TAG
62 TAG
* * * * * * *
25601366 ACAAGAGAGCTATGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGT
25601431 AG
63 AG
* * * *
25601433 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-G
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG
25601495 TACAAGAGAGC
1 -ACAAGAGAGC
25601506 CGAACTATAT
Statistics
Matches: 115, Mismatches: 20, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.17
64 26 0.23
65 2 0.02
66 23 0.20
67 32 0.28
68 12 0.10
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (64 bp):
ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG
Found at i:25602524 original size:15 final size:16
Alignment explanation
Indices: 25602506--25602535 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25602496 ATGGAAACTA
25602506 TGATAT-ATGAAATAT
1 TGATATAATGAAATAT
25602521 TGATATAATGAAATA
1 TGATATAATGAAATA
25602536 AATGATATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (16 bp):
TGATATAATGAAATAT
Found at i:25602928 original size:17 final size:17
Alignment explanation
Indices: 25602906--25602940 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
25602896 TATGCTTTTG
25602906 ATTTTGTATAAGTGTGT
1 ATTTTGTATAAGTGTGT
25602923 ATTTTGTATAAGTGTGT
1 ATTTTGTATAAGTGTGT
25602940 A
1 A
25602941 AGAGATTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (17 bp):
ATTTTGTATAAGTGTGT
Found at i:25603822 original size:6 final size:6
Alignment explanation
Indices: 25603811--25603997 Score: 163
Period size: 6 Copynumber: 30.8 Consensus size: 6
25603801 AACCAAAATG
*
25603811 AGAATC AGAATC AGAATC AGCAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
25603859 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
25603908 AGAATC AGTAA-C AGAATC AGAATC AAAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* * *
25603956 AAAATC AGAATC AGAATT ATGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
25603998 GTGAATGCAA
Statistics
Matches: 147, Mismatches: 18, Indels: 32
0.75 0.09 0.16
Matches are distributed among these distances:
5 11 0.07
6 123 0.84
7 10 0.07
8 3 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:25603826 original size:30 final size:30
Alignment explanation
Indices: 25603790--25603997 Score: 218
Period size: 30 Copynumber: 7.1 Consensus size: 30
25603780 AAGAAACATT
* *
25603790 ATCAGAATT-GGAACCAAAATGAGAATCAGA
1 ATCAGAATTAGGAA-CAGAATCAGAATCAGA
* *
25603820 ATCAGAATCAGCAACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
*
25603850 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATTAGGAACAGAATCAGAATCAGA
*
25603880 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATTAGG-AACAGAATCAGAATCAGA
*
25603911 ATCAG---T---AACAGAATCAGAATCAAA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
* * *
25603935 ATCAGTATTAGTAACAGAATCAAAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
25603965 ATCAGAATTATGTG-ACAGAATCAGAATCAGA
1 ATCAGAATTA-G-GAACAGAATCAGAATCAGA
25603996 AT
1 AT
25603998 GTGAATGCAA
Statistics
Matches: 151, Mismatches: 15, Indels: 23
0.80 0.08 0.12
Matches are distributed among these distances:
24 21 0.14
27 1 0.01
28 1 0.01
29 1 0.01
30 82 0.54
31 45 0.30
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (30 bp):
ATCAGAATTAGGAACAGAATCAGAATCAGA
Found at i:25603911 original size:85 final size:85
Alignment explanation
Indices: 25603811--25603997 Score: 329
Period size: 85 Copynumber: 2.2 Consensus size: 85
25603801 AACCAAAATG
* *
25603811 AGAATCAGAATCAGAATCAGCAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGCAACAGAATCAGAATCAAAATCAATATTAGTAACAGAATCAAAAT
25603876 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTAGGTGAC
* *
25603896 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAAAATCAGTATTAGTAACAGAATCAAAAT
1 AGAATCAGAATCAGAATCAGCAACAGAATCAGAATCAAAATCAATATTAGTAACAGAATCAAAAT
*
25603961 CAGAATCAGAATTATGTGAC
66 CAGAATCAGAATTAGGTGAC
25603981 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
25603998 GTGAATGCAA
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 97 1.00
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGCAACAGAATCAGAATCAAAATCAATATTAGTAACAGAATCAAAAT
CAGAATCAGAATTAGGTGAC
Found at i:25604578 original size:27 final size:26
Alignment explanation
Indices: 25604499--25604581 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
25604489 TCAATCGGTC
* * *
25604499 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
25604525 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
25604552 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
25604579 AAC
1 AAC
25604582 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:25604810 original size:27 final size:27
Alignment explanation
Indices: 25604780--25604975 Score: 214
Period size: 27 Copynumber: 7.3 Consensus size: 27
25604770 CGGGCAAAAT
* * *
25604780 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
25604807 GGTAATTCTACCCTAC-AGGAGCATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
* *
25604834 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
25604861 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
25604888 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
25604915 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
25604942 AGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
25604969 AGTAATT
1 GGTAATT
25604976 TCACAATCAA
Statistics
Matches: 146, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
26 3 0.02
27 140 0.96
28 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:25604846 original size:54 final size:54
Alignment explanation
Indices: 25604782--25604975 Score: 239
Period size: 54 Copynumber: 3.6 Consensus size: 54
25604772 GGCAAAATGG
* * * * * *
25604782 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGAGCATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGA
* * *
25604836 TATTTCTACCCTACAAGGGTATTTC-GATAATTCTACCCTACAGGGGTATTTTGG
1 TAATTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTCGA
* * *
25604890 TAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAGA
1 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC-GA
*
25604945 -AATTCTACCCTACAGGGGTATTTCAGTAATT
1 TAATTCTACCCTACAAGGGTATTTCAGTAATT
25604976 TCACAATCAA
Statistics
Matches: 120, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
53 1 0.01
54 117 0.98
55 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (54 bp):
TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGA
Found at i:25605010 original size:27 final size:27
Alignment explanation
Indices: 25604980--25605307 Score: 392
Period size: 27 Copynumber: 12.2 Consensus size: 27
25604970 GTAATTTCAC
* * *
25604980 AATCAAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
25605007 AATCGAGGGTAAAATGAT-ATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
25605033 AATTGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
25605060 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
25605087 AA-CTGAGGGTAAAATGATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
25605114 AATCGAGGGTAAAATGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
25605141 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
25605168 AATCGAGGGTAAAACAGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
25605195 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * **
25605222 AATTGAGGGTAAAATGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
25605249 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
25605276 TATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
25605303 AATCG
1 AATCG
25605308 GGACTACTTT
Statistics
Matches: 257, Mismatches: 39, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
26 23 0.09
27 233 0.91
28 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:25605327 original size:81 final size:81
Alignment explanation
Indices: 25604980--25605307 Score: 448
Period size: 81 Copynumber: 4.1 Consensus size: 81
25604970 GTAATTTCAC
* * * *
25604980 AATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGAT-ATTTTGTAAATTGAGGGTA
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTA
25605044 AAACGGTAATTCTGTA
66 AAACGGTAATTCTGTA
* *
25605060 AATCGAGGGTAAAATAGTAATTCTATAAA-CTGAGGGTAAAATGATAATTCTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAACGATAATTCTGTAAATCGAGGGT
* * **
25605124 AAAATGGTAATTTTAAA
65 AAAACGGTAATTCTGTA
* *
25605141 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC-AGTAATTTTGTAAA-CTGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGA-TAATTCTGTAAATC-GAGGG
25605204 TAAAACGGTAATTCTGTA
64 TAAAACGGTAATTCTGTA
* * * * *
25605222 AATTGAGGGTAAAATGGTAATTTTAAAAATCGAGGGTAAAACGGTAATTCTGTATATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTA
25605287 AAACGGTAATTCTGTA
66 AAACGGTAATTCTGTA
25605303 AATCG
1 AATCG
25605308 GGACTACTTT
Statistics
Matches: 217, Mismatches: 24, Indels: 13
0.85 0.09 0.05
Matches are distributed among these distances:
79 1 0.00
80 43 0.20
81 171 0.79
82 2 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTA
AAACGGTAATTCTGTA
Found at i:25607097 original size:17 final size:17
Alignment explanation
Indices: 25607075--25607110 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
25607065 GTTGACTGAG
25607075 TTATCTTGGGATTGAAA
1 TTATCTTGGGATTGAAA
25607092 TTATCTTGGGATTGAAA
1 TTATCTTGGGATTGAAA
25607109 TT
1 TT
25607111 GATGACAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.06, G:0.22, T:0.44
Consensus pattern (17 bp):
TTATCTTGGGATTGAAA
Found at i:25615064 original size:40 final size:40
Alignment explanation
Indices: 25615016--25615131 Score: 155
Period size: 40 Copynumber: 2.9 Consensus size: 40
25615006 GGACTAAGAT
* *
25615016 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCAGGCTAAGTC
* *
25615056 CCGAAGGCATTTGTGCTAGTGACTATGTCTAGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCAGGCTAAGTC
* *
25615096 CCGAAGGCATTCGTGCGAGTTG-CTATATCC-GGCTAA
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCAGGCTAA
25615132 ATTTCGAAAG
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
39 6 0.09
40 59 0.88
41 2 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCAGGCTAAGTC
Found at i:25621566 original size:109 final size:109
Alignment explanation
Indices: 25621375--25621577 Score: 363
Period size: 109 Copynumber: 1.9 Consensus size: 109
25621365 TAAATGATTA
* * *
25621375 TTGTGACAGCCCTAAATTGACCCTAGTCGGAAAGCGGTTTCGAGACCGCTAAAGCGAATCACTGA
1 TTGTGACAGCCCTAAATTGACCCTAGTCGGAAAGCAGTTTCGAGACCGCTAAACCGAATCACCGA
25621440 AGTATTTGAATATAATATTTATTGTCTAATTAAGTGGGGGAGAG
66 AGTATTTGAATATAATATTTATTGTCTAATTAAGTGGGGGAGAG
25621484 TTGTGACAGCCCTAAATTGACCCTAGTCGGAAAGCAGTTTC-AGGACCGCTAAACCGAATCACCG
1 TTGTGACAGCCCTAAATTGACCCTAGTCGGAAAGCAGTTTCGA-GACCGCTAAACCGAATCACCG
25621548 AAGTATTTGAATATAATATTTATTGTCTAA
65 AAGTATTTGAATATAATATTTATTGTCTAA
25621578 AATATGTGGA
Statistics
Matches: 90, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
108 1 0.01
109 89 0.99
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.29
Consensus pattern (109 bp):
TTGTGACAGCCCTAAATTGACCCTAGTCGGAAAGCAGTTTCGAGACCGCTAAACCGAATCACCGA
AGTATTTGAATATAATATTTATTGTCTAATTAAGTGGGGGAGAG
Found at i:25623128 original size:40 final size:40
Alignment explanation
Indices: 25623080--25623245 Score: 246
Period size: 40 Copynumber: 4.2 Consensus size: 40
25623070 GGACTAAGAT
*
25623080 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
25623120 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
25623160 TCGAAGGCATTTGTGCTAGTGACTATGTCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * * *
25623200 CCGAAGGCATTCGTGCGAGTTG-CTATATCC-GGCTAAATT
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
25623239 CCGAAGG
1 CCGAAGG
25623246 TACTTGGGTT
Statistics
Matches: 116, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 14 0.12
40 100 0.86
41 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:25632042 original size:19 final size:18
Alignment explanation
Indices: 25632014--25632049 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
25632004 TACACGGCCT
25632014 AGGGACACGGGCATGTCA
1 AGGGACACGGGCATGTCA
*
25632032 AGGGCACACGGGCGTGTC
1 AGGG-ACACGGGCATGTC
25632050 CTTGTGTCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.22, C:0.25, G:0.42, T:0.11
Consensus pattern (18 bp):
AGGGACACGGGCATGTCA
Found at i:25632831 original size:43 final size:42
Alignment explanation
Indices: 25632761--25632926 Score: 158
Period size: 43 Copynumber: 3.8 Consensus size: 42
25632751 CAATGCCAAC
* * *
25632761 GTCCCAGACGTGGTCCTACATGTAATCAAATATCGATGCCATT
1 GTCCCAGACGTGGTCTTACACGAAATCAAATATCGATGCCA-T
*
25632804 GTCCCAGACAG-GGTCTTACACGAAATCAAATAT-GATGCTGAT
1 GTCCCAGAC-GTGGTCTTACACGAAATCAAATATCGATGC-CAT
* *
25632846 GTCCCAGACATGGTCTTACACACGTAAATCATAA-GTCGATGCCAAT
1 GTCCCAGACGTGGTCTT--ACACG-AAATCA-AATATCGATGCC-AT
* * *
25632892 GTCCCAGACGTGGGCTTACACGAAAACACATATCG
1 GTCCCAGACGTGGTCTTACACGAAATCAAATATCG
25632927 GATCCTATGT
Statistics
Matches: 101, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
42 22 0.22
43 37 0.37
44 11 0.11
45 7 0.07
46 24 0.24
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.23
Consensus pattern (42 bp):
GTCCCAGACGTGGTCTTACACGAAATCAAATATCGATGCCAT
Found at i:25641917 original size:18 final size:17
Alignment explanation
Indices: 25641894--25641937 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
25641884 TGAAGTTCAT
25641894 TGAATTGGTATGAACATA
1 TGAATTGGTATG-ACATA
25641912 TGAATTGTGT-TGACATA
1 TGAATTG-GTATGACATA
25641929 -GAATTGGTA
1 TGAATTGGTA
25641938 GATGATTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
15 2 0.08
16 6 0.25
17 5 0.21
18 9 0.38
19 2 0.08
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (17 bp):
TGAATTGGTATGACATA
Found at i:25647129 original size:40 final size:40
Alignment explanation
Indices: 25647084--25648148 Score: 2024
Period size: 40 Copynumber: 26.6 Consensus size: 40
25647074 CAAGCTCAAT
* * * * *
25647084 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
25647124 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
25647164 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
25647204 CGCCGTCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
25647244 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
25647284 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
25647324 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
25647364 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
25647404 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
25647444 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
25647484 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
25647524 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
25647564 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
25647604 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
25647644 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
25647684 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
25647724 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
25647764 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
25647804 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
25647844 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
25647884 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
25647924 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
25647964 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
25648004 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
25648044 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
25648084 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
25648124 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
25648149 CATTCAAATG
Statistics
Matches: 1008, Mismatches: 15, Indels: 4
0.98 0.01 0.00
Matches are distributed among these distances:
39 2 0.00
40 1005 1.00
41 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:25654034 original size:30 final size:30
Alignment explanation
Indices: 25654000--25654060 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
25653990 TCCTTAACTC
*
25654000 AAACTTTGGGAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
25654030 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
25654060 A
1 A
25654061 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:25655353 original size:40 final size:40
Alignment explanation
Indices: 25655296--25655405 Score: 123
Period size: 40 Copynumber: 2.7 Consensus size: 40
25655286 TATGTTTGGA
* * *
25655296 ACTTAGTGTGCGTATCGAGATAGCTTCGGCTATATAAAAC
1 ACTTAGTATGCGAATCGAGATAGCTTCAGCTATATAAAAC
* ***
25655336 ACTTAGTATGCGAATCGAAATAGCTTCAGCTATATATGGC
1 ACTTAGTATGCGAATCGAGATAGCTTCAGCTATATAAAAC
*
25655376 ACTTAGTATGC-AATACTAAGATAGCTTCAG
1 ACTTAGTATGCGAAT-C-GAGATAGCTTCAG
25655406 ATATGAAAGG
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.05
40 45 0.76
41 11 0.19
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (40 bp):
ACTTAGTATGCGAATCGAGATAGCTTCAGCTATATAAAAC
Found at i:25655422 original size:41 final size:40
Alignment explanation
Indices: 25655296--25655423 Score: 116
Period size: 40 Copynumber: 3.2 Consensus size: 40
25655286 TATGTTTGGA
* * * * * **
25655296 ACTTAGTGTGCGTATCGAGATAGCTTCGGCTATATAAAAC
1 ACTTAGTATGCGAATCGAAATAGCTTCAGATATATAAGGC
* *
25655336 ACTTAGTATGCGAATCGAAATAGCTTCAGCTATATATGGC
1 ACTTAGTATGCGAATCGAAATAGCTTCAGATATATAAGGC
*
25655376 ACTTAGTATGC-AATACTAAGATAGCTTCAGATATGA-AAGGC
1 ACTTAGTATGCGAAT-CGAA-ATAGCTTCAGATAT-ATAAGGC
*
25655417 GCTTAGT
1 ACTTAGT
25655424 GTGTGACTTA
Statistics
Matches: 74, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
39 3 0.04
40 47 0.64
41 23 0.31
42 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (40 bp):
ACTTAGTATGCGAATCGAAATAGCTTCAGATATATAAGGC
Found at i:25655653 original size:40 final size:40
Alignment explanation
Indices: 25655609--25655740 Score: 108
Period size: 40 Copynumber: 3.3 Consensus size: 40
25655599 TTATGTTTTC
* * *
25655609 CACTTAGTGTGTGTATC-GAGATAGCTTTGGCTATATAAAG
1 CACTTAGTGTGTGAATCGGAG-TAGCTTCGACTATATAAAG
* * **
25655649 CACTTAATGTGTGAATTGGAGTAGCTTCGACTATATATGG
1 CACTTAGTGTGTGAATCGGAGTAGCTTCGACTATATAAAG
* * * *
25655689 CACTTAGTGTGCGAGA-CTGAGATAGGTTCGACTATGA-AAGG
1 CACTTAGTGTGTGA-ATCGGAG-TAGCTTCGACTAT-ATAAAG
25655730 CACTTAGTGTG
1 CACTTAGTGTG
25655741 CGAGATTATA
Statistics
Matches: 75, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
40 44 0.59
41 30 0.40
42 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (40 bp):
CACTTAGTGTGTGAATCGGAGTAGCTTCGACTATATAAAG
Found at i:25655729 original size:314 final size:312
Alignment explanation
Indices: 25655127--25655740 Score: 829
Period size: 314 Copynumber: 2.0 Consensus size: 312
25655117 ACATAGATCA
* *
25655127 AGGCAAGAATAAAGTACTCAACTAATCGACTAGTTTCGTCATTTTTACGTATAAGGTAAGTTAGT
1 AGGCAAGAATAAAGTACTCAACTAATCGACTACTTTCATCATTTTTACGTATAAGGTAAGTTAGT
* * * * * * *
25655192 ATATGATAAACATTGTTACAATTATATTTTTATTGCTTTAATATTGTATAAATTATATATATGAG
66 ACATAATAAACATTGTTACAATTATATCTTTAATGCTTTAATATTGCATAAATTATATATATCAA
* *
25655257 ACAATGGTTGTGTATGACAATGAATTGATTATGTTTGGAACTTAGTGTGCGTATCGAGATAGCTT
131 ACAATGGTTGTGTATGACAATGAATCGATTATGTTTGCAACTTAGTGTGCGTATCGAGATAGCTT
*
25655322 CGGCTATATAAAACACTTAGTATGCGAATCGAAATAGCTTCAGCTATATATGGCACTTAGTATGC
196 CGGCTATATAAAACACTTAATATGCGAATCGAAATAGCTTCAGCTATATATGGCACTTAGTATGC
* *
25655387 AATACTAAGATAGCTTCAGATATGAAAGGCGCTTAGTGTGTGACTTAGATTG
261 AAGACTAAGATAGCTTCAGATATGAAAGGCACTTAGTGTGTGACTTAGATTG
* * *
25655439 AGGCAGGAATAAAGTACTCGACTAATCGACTACTTTCATCATTTTTACGTCTAAGGTAAGTTCA-
1 AGGCAAGAATAAAGTACTCAACTAATCGACTACTTTCATCATTTTTACGTATAAGGTAAGTT-AG
* *
25655503 TACGTAATAAACATTGTTACAATTATGTCTTTAATGCTTTAATATTGCATAAATTATATATATAT
65 TACATAATAAACATTGTTACAATTATATCTTTAATGCTTTAATATTGCATAAA-T-TATATATAT
* * ** * * *
25655568 CAAACGATGGTTTTGTATGATGATGAATCGATTATGTTTTCCACTTAGTGTGTGTATCGAGATAG
128 CAAACAATGGTTGTGTATGACAATGAATCGATTATGTTTGCAACTTAGTGTGCGTATCGAGATAG
* * * * * * *
25655633 CTTTGGCTATATAAAGCACTTAATGTGTGAATTGGAGTAGCTTC-GACTATATATGGCACTTAGT
193 CTTCGGCTATATAAAACACTTAATATGCGAATCGAAATAGCTTCAG-CTATATATGGCACTTAGT
* * * *
25655697 GTGCGAGACTGAGATAGGTTC-GACTATGAAAGGCACTTAGTGTG
257 ATGCAAGACTAAGATAGCTTCAGA-TATGAAAGGCACTTAGTGTG
25655741 CGAGATTATA
Statistics
Matches: 260, Mismatches: 37, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
312 103 0.40
313 5 0.02
314 152 0.58
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.36
Consensus pattern (312 bp):
AGGCAAGAATAAAGTACTCAACTAATCGACTACTTTCATCATTTTTACGTATAAGGTAAGTTAGT
ACATAATAAACATTGTTACAATTATATCTTTAATGCTTTAATATTGCATAAATTATATATATCAA
ACAATGGTTGTGTATGACAATGAATCGATTATGTTTGCAACTTAGTGTGCGTATCGAGATAGCTT
CGGCTATATAAAACACTTAATATGCGAATCGAAATAGCTTCAGCTATATATGGCACTTAGTATGC
AAGACTAAGATAGCTTCAGATATGAAAGGCACTTAGTGTGTGACTTAGATTG
Found at i:25655765 original size:41 final size:41
Alignment explanation
Indices: 25655670--25655788 Score: 102
Period size: 41 Copynumber: 2.9 Consensus size: 41
25655660 TGAATTGGAG
* *
25655670 TAGCTTCGACTAT--ATATGGCACTTAGTGTGCGAGACTGAGA
1 TAGCTTCGACTATGCA-AAGGCACTTAGTGTGCGAGA-TGAAA
* *
25655711 TAGGTTCGACTATG-AAAGGCACTTAGTGTGCGAGATTATAA
1 TAGCTTCGACTATGCAAAGGCACTTAGTGTGCGAGATGA-AA
*** *
25655752 TAGCTTC-AGCTATGCTCTGGCACTTAGTGTGTGAGAT
1 TAGCTTCGA-CTATGCAAAGGCACTTAGTGTGCGAGAT
25655789 ATCGAATATT
Statistics
Matches: 65, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
40 3 0.05
41 43 0.66
42 19 0.29
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (41 bp):
TAGCTTCGACTATGCAAAGGCACTTAGTGTGCGAGATGAAA
Found at i:25658942 original size:27 final size:27
Alignment explanation
Indices: 25658903--25659016 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 27
25658893 CCCTGTTTAG
* * *
25658903 AATA-CCTTAGTTTACCAAATTATCAA
1 AATACCCTTGGTTTACAAAATTACCAA
**
25658929 AATACCCTTGGTTTGTAAAATTACCAA
1 AATACCCTTGGTTTACAAAATTACCAA
*
25658956 AATACCCTTGGTTTACAAAATTATCAA
1 AATACCCTTGGTTTACAAAATTACCAA
* **
25658983 AATACCCCTGGTTTGTAAAATTACCAA
1 AATACCCTTGGTTTACAAAATTACCAA
25659010 AATACCC
1 AATACCC
25659017 CTGATTTGTG
Statistics
Matches: 75, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
26 4 0.05
27 71 0.95
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AATACCCTTGGTTTACAAAATTACCAA
Found at i:25658984 original size:54 final size:54
Alignment explanation
Indices: 25658903--25659016 Score: 194
Period size: 54 Copynumber: 2.1 Consensus size: 54
25658893 CCCTGTTTAG
* *
25658903 AATA-CCTTAGTTTACCAAATTATCAAAATACCCTTGGTTTGTAAAATTACCAA
1 AATACCCTTAGTTTACAAAATTATCAAAATACCCCTGGTTTGTAAAATTACCAA
*
25658956 AATACCCTTGGTTTACAAAATTATCAAAATACCCCTGGTTTGTAAAATTACCAA
1 AATACCCTTAGTTTACAAAATTATCAAAATACCCCTGGTTTGTAAAATTACCAA
25659010 AATACCC
1 AATACCC
25659017 CTGATTTGTG
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
53 4 0.07
54 53 0.93
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (54 bp):
AATACCCTTAGTTTACAAAATTATCAAAATACCCCTGGTTTGTAAAATTACCAA
Found at i:25659017 original size:27 final size:27
Alignment explanation
Indices: 25658919--25659115 Score: 173
Period size: 27 Copynumber: 7.3 Consensus size: 27
25658909 TTAGTTTACC
* * *
25658919 AAATTATCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * **
25658946 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGATTTGTA
* *
25658973 AAATTATCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
25659000 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
** **
25659027 AAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*** *
25659054 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* *
25659081 AAATTACCAAAGTACCCCTGATTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
*
25659108 GAATTACC
1 AAATTACC
25659116 GTTTTACCTT
Statistics
Matches: 144, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 4 0.03
27 136 0.94
28 4 0.03
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:25659138 original size:81 final size:81
Alignment explanation
Indices: 25658919--25659154 Score: 224
Period size: 81 Copynumber: 2.9 Consensus size: 81
25658909 TTAGTTTACC
* * * * * * * * *
25658919 AAATTATCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTATCAAA
1 AAATTACCAAAATACCCCTGATTTATGAAATTACCGAAATACCCTCGATTTACAAAATTATCGAA
**
25658984 ATACCC-CTGGTTTGTA
66 ATACCCTC-GACTTGTA
* * ** ** *
25659000 AAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACCTGTAAAATTATTGAA
1 AAATTACCAAAATACCCCTGATTTATGAAATTACCGAAATACCCTCGATTTACAAAATTATCGAA
25659065 ATACCCTCGACTTGTA
66 ATACCCTCGACTTGTA
* *** * *
25659081 AAATTACCAAAGTACCCCTGATTTAT-AGAATTACCGTTTTACCTTCGATTTACAAAATTACCGA
1 AAATTACCAAAATACCCCTGATTTATGA-AATTACCGAAATACCCTCGATTTACAAAATTATCGA
25659145 AATACCCTCG
65 AATACCCTCG
25659155 TAGGGTAGAA
Statistics
Matches: 124, Mismatches: 29, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
80 1 0.01
81 122 0.98
82 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGATTTATGAAATTACCGAAATACCCTCGATTTACAAAATTATCGAA
ATACCCTCGACTTGTA
Found at i:25659169 original size:27 final size:27
Alignment explanation
Indices: 25659136--25659411 Score: 385
Period size: 27 Copynumber: 10.3 Consensus size: 27
25659126 CGATTTACAA
25659136 AATTACCGAAATA-CCCTCGTAGGGTAG
1 AATTACCGAAATACCCCT-GTAGGGTAG
* *
25659163 AAATACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
25659190 AAATATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
25659217 AATTACCGAAATACCCCTGTAGGGTAC
1 AATTACCGAAATACCCCTGTAGGGTAG
25659244 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
25659271 AATTATCGCAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
25659298 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
25659325 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
25659352 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
25659379 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
25659405 AATTACC
1 AATTACC
25659412 ATTTTGCCCC
Statistics
Matches: 224, Mismatches: 24, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
26 16 0.07
27 204 0.91
28 4 0.02
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:25659890 original size:22 final size:22
Alignment explanation
Indices: 25659838--25659902 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
25659828 TTAAAGCCTT
* *
25659838 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
25659860 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
25659882 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
25659903 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:25660091 original size:27 final size:27
Alignment explanation
Indices: 25660061--25660162 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
25660051 ATTCTGTTAA
* *
25660061 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
25660088 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
25660115 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
25660142 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
25660163 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 52 0.78
28 7 0.10
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:25660345 original size:31 final size:31
Alignment explanation
Indices: 25660310--25660409 Score: 137
Period size: 31 Copynumber: 3.2 Consensus size: 31
25660300 TTTTGATTTT
* *
25660310 TGATTCTGTTACCTGATACTGATTTTGATTT
1 TGATTCTGTTACCTGATACTGATTCTGATTC
* *
25660341 TGATTCTATTACCTGATACCGATTCTGATTC
1 TGATTCTGTTACCTGATACTGATTCTGATTC
* * *
25660372 TGATTCTGTCACCTAATTCTGATTCTGATTC
1 TGATTCTGTTACCTGATACTGATTCTGATTC
25660403 TGATTCT
1 TGATTCT
25660410 AGTTCTGATA
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 60 1.00
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (31 bp):
TGATTCTGTTACCTGATACTGATTCTGATTC
Found at i:25660372 original size:6 final size:6
Alignment explanation
Indices: 25660322--25660418 Score: 65
Period size: 6 Copynumber: 15.8 Consensus size: 6
25660312 ATTCTGTTAC
* * * * *
25660322 CTGATA CTGATT TTGATT TTGATT CT-ATT ACCTGATA CCGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* *
25660371 CTGATT CTG-TCAC CTAATT CTGATT CTGATT CTGATT CT-AGTT CTGAT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
25660419 AATGTTTCTT
Statistics
Matches: 72, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
5 5 0.07
6 59 0.82
7 5 0.07
8 3 0.04
ACGTcount: A:0.21, C:0.19, G:0.14, T:0.46
Consensus pattern (6 bp):
CTGATT
Found at i:25662111 original size:22 final size:22
Alignment explanation
Indices: 25662085--25662127 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
25662075 ACTTGAAAAT
25662085 TTTAAAAATTTGAGAAATTTAA
1 TTTAAAAATTTGAGAAATTTAA
*
25662107 TTTAAAAATTTGAGCAATTTA
1 TTTAAAAATTTGAGAAATTTA
25662128 TTTGCCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.42
Consensus pattern (22 bp):
TTTAAAAATTTGAGAAATTTAA
Found at i:25671526 original size:53 final size:54
Alignment explanation
Indices: 25671446--25671652 Score: 211
Period size: 53 Copynumber: 3.8 Consensus size: 54
25671436 TTCCTTTTTA
* * * *
25671446 AACTTATCACTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
25671499 AACTCACCATTGCCATGCCTTGGCATGGTCTTATATGGGATCCTTGCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * *
25671553 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGAT-TACCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTAT-CCTTGCCTTATAG
* *
25671608 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
25671653 AAACCCTAAT
Statistics
Matches: 122, Mismatches: 28, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
53 44 0.36
54 38 0.31
55 40 0.33
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:25679340 original size:25 final size:25
Alignment explanation
Indices: 25679294--25679344 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
25679284 CCCATATAAT
* *
25679294 GTGAAAATGACCTTTTTGCCCCTAG
1 GTGAAAATGACCTTTGTACCCCTAG
25679319 GTGAAAATGA-CTATTGTACCCCTAG
1 GTGAAAATGACCT-TTGTACCCCTAG
25679344 G
1 G
25679345 GTTATGTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (25 bp):
GTGAAAATGACCTTTGTACCCCTAG
Found at i:25679403 original size:10 final size:10
Alignment explanation
Indices: 25679388--25679422 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
25679378 TTTGTACATA
25679388 ATATGCCATG
1 ATATGCCATG
25679398 ATATGCACATG
1 ATATGC-CATG
25679409 ATATGCCATG
1 ATATGCCATG
25679419 ATAT
1 ATAT
25679423 ATACATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (10 bp):
ATATGCCATG
Found at i:25679407 original size:21 final size:21
Alignment explanation
Indices: 25679383--25679422 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
25679373 ATTGATTTGT
25679383 ACATAATATGCCATGATATGC
1 ACATAATATGCCATGATATGC
*
25679404 ACATGATATGCCATGATAT
1 ACATAATATGCCATGATAT
25679423 ATACATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (21 bp):
ACATAATATGCCATGATATGC
Found at i:25679428 original size:21 final size:20
Alignment explanation
Indices: 25679382--25679434 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 20
25679372 TATTGATTTG
*
25679382 TACATAATATGCCATGATATG
1 TACAT-ATATGCCATGATATA
*
25679403 CACATGATATGCCATGATATA
1 TACAT-ATATGCCATGATATA
25679424 TACATATATGC
1 TACATATATGC
25679435 ATGGGTTGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 6 0.21
21 22 0.79
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (20 bp):
TACATATATGCCATGATATA
Found at i:25679500 original size:25 final size:25
Alignment explanation
Indices: 25679468--25679537 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
25679458 GAGGAAGTGC
25679468 AAAAGGGCTTTGCCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
25679493 AAAAGGGCTCTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
25679518 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
25679538 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:25679561 original size:50 final size:50
Alignment explanation
Indices: 25679468--25679562 Score: 122
Period size: 50 Copynumber: 1.9 Consensus size: 50
25679458 GAGGAAGTGC
**
25679468 AAAAGGGCTTTGCCCCAGTTTACCAAAAAGGGCTCTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCAAAAAGGGCTAGGCCCCAGTTTACCG
**
25679518 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTTTGCCCCAGTTTACCAAAAAG-GGCTAGGCC-CCAGTT
25679563 ATATGATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 24 0.62
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.23
Consensus pattern (50 bp):
AAAAGGGCTTTGCCCCAGTTTACCAAAAAGGGCTAGGCCCCAGTTTACCG
Found at i:25681918 original size:53 final size:55
Alignment explanation
Indices: 25681861--25682013 Score: 166
Period size: 53 Copynumber: 2.8 Consensus size: 55
25681851 TTTTAAACAT
*
25681861 ACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G-AACTC
1 ACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATCGTAACTC
* * * * * ** *
25681914 ACCATTGTCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCGTAGTTT
1 ACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATCGTAACTC
* * * * *
25681969 ATCAATGCCATGTCCTGACATGGTCTCACATGGTTTCCTTGCCTT
1 ACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTT
25682014 GTAAAACATA
Statistics
Matches: 79, Mismatches: 19, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
53 41 0.52
54 1 0.01
55 37 0.47
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.37
Consensus pattern (55 bp):
ACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATCGTAACTC
Found at i:25683945 original size:7 final size:7
Alignment explanation
Indices: 25683933--25683970 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
25683923 CAGAGAGAAT
25683933 GATGAGG
1 GATGAGG
25683940 GATGAGG
1 GATGAGG
*
25683947 GATGATG
1 GATGAGG
*
25683954 GATGATG
1 GATGAGG
25683961 GATGAGG
1 GATGAGG
25683968 GAT
1 GAT
25683971 CAAATGAGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.29, C:0.00, G:0.50, T:0.21
Consensus pattern (7 bp):
GATGAGG
Found at i:25687006 original size:31 final size:31
Alignment explanation
Indices: 25686952--25687032 Score: 65
Period size: 31 Copynumber: 2.6 Consensus size: 31
25686942 TTCCTGCATT
* * * * *
25686952 AAAATCCAACCAAATACAACAAATATAA-TA
1 AAAATACAACCAAAAATAGCAAATATACATA
* * *
25686982 TAAAATGCAGCCAAAAATAGCAAATTTAGCATA
1 -AAAATACAACCAAAAATAGCAAATATA-CATA
25687015 AAAATACAACCAAAAATA
1 AAAATACAACCAAAAATA
25687033 TTAATTCTAA
Statistics
Matches: 39, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
31 21 0.54
32 16 0.41
33 2 0.05
ACGTcount: A:0.60, C:0.17, G:0.05, T:0.17
Consensus pattern (31 bp):
AAAATACAACCAAAAATAGCAAATATACATA
Found at i:25687288 original size:21 final size:21
Alignment explanation
Indices: 25687264--25687360 Score: 101
Period size: 21 Copynumber: 4.6 Consensus size: 21
25687254 TCTGCTGCCA
25687264 TCGCTGCAT-CCTCTGCCTCCC
1 TCGCTGC-TGCCTCTGCCTCCC
25687285 TCGCT-CGTGCCTCTGCCTCCC
1 TCGCTGC-TGCCTCTGCCTCCC
* * *
25687306 TCACTACTGCCGCTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
*
25687327 TCGCTGCTG-CTGCTGCCGCCC
1 TCGCTGCTGCCT-CTGCCTCCC
*
25687348 TCTCTGCTGCCTC
1 TCGCTGCTGCCTC
25687361 CGCTCTAAGT
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
20 3 0.05
21 58 0.91
22 3 0.05
ACGTcount: A:0.03, C:0.51, G:0.19, T:0.28
Consensus pattern (21 bp):
TCGCTGCTGCCTCTGCCTCCC
Found at i:25687833 original size:16 final size:18
Alignment explanation
Indices: 25687802--25687834 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
25687792 TAAAGATTAT
25687802 AAATATTTAGAATAAATC
1 AAATATTTAGAATAAATC
25687820 AAATA-TTA-AATAAAT
1 AAATATTTAGAATAAAT
25687835 ATACCATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (18 bp):
AAATATTTAGAATAAATC
Found at i:25692943 original size:9 final size:9
Alignment explanation
Indices: 25692922--25693042 Score: 63
Period size: 9 Copynumber: 13.6 Consensus size: 9
25692912 TATATATTAC
*
25692922 GTAAGTTAA
1 GTAAGTTAT
25692931 GTAAGCTT-T
1 GTAAG-TTAT
25692940 GTAAGTTAT
1 GTAAGTTAT
25692949 GTAAGTTAT
1 GTAAGTTAT
* *
25692958 GTTA-TGAT
1 GTAAGTTAT
* *
25692966 ATACATTTAT
1 GTA-AGTTAT
**
25692976 GTAAGGCAT
1 GTAAGTTAT
25692985 GTAAGTTAT
1 GTAAGTTAT
* *
25692994 GATATGATAT
1 G-TAAGTTAT
* *
25693004 AT-ATTTAT
1 GTAAGTTAT
25693012 GT-A-TTAT
1 GTAAGTTAT
*
25693019 GTAAGTTGT
1 GTAAGTTAT
25693028 GTAAGTTAT
1 GTAAGTTAT
25693037 GATAAG
1 G-TAAG
25693043 ATATATATTT
Statistics
Matches: 83, Mismatches: 21, Indels: 15
0.70 0.18 0.13
Matches are distributed among these distances:
7 6 0.07
8 12 0.14
9 48 0.58
10 17 0.20
ACGTcount: A:0.34, C:0.02, G:0.21, T:0.43
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:25693063 original size:56 final size:56
Alignment explanation
Indices: 25692996--25693227 Score: 348
Period size: 56 Copynumber: 4.2 Consensus size: 56
25692986 TAAGTTATGA
25692996 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATT
1 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATT
* *
25693052 TATGATATATATTTGGA-GTATTATGTAAGTTGTGTAAGTTATGATATGATACATATT
1 TATGATATATATTT--ATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATT
* * *
25693109 TATGAAATATATTTATGTATTATGTTAGTTGTGTAAGTTATGATATGATATATATT
1 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATT
* *
25693165 TATGATATATATTTATGTATTATGTAAGTTTTGTAAGTTATG-TAAG-T-TAT-TA
1 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATT
25693217 TATGATATATA
1 TATGATATATA
25693228 ATAAATATTA
Statistics
Matches: 163, Mismatches: 10, Indels: 10
0.89 0.05 0.05
Matches are distributed among these distances:
52 12 0.07
53 3 0.02
54 1 0.01
55 4 0.02
56 91 0.56
57 51 0.31
58 1 0.01
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.49
Consensus pattern (56 bp):
TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATT
Found at i:25693125 original size:113 final size:112
Alignment explanation
Indices: 25692996--25693206 Score: 361
Period size: 113 Copynumber: 1.9 Consensus size: 112
25692986 TAAGTTATGA
*
25692996 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATTTATGATATA
1 TATGAAATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATTTATGATATA
25693061 TATTTGGA-GTATTATGTAAGTTGTGTAAGTTATGATATGATACATATT
66 TATTT--ATGTATTATGTAAGTTGTGTAAGTTATGATATGATACATATT
* *
25693109 TATGAAATATATTTATGTATTATGTTAGTTGTGTAAGTTATGATATGATATATATTTATGATATA
1 TATGAAATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATTTATGATATA
*
25693174 TATTTATGTATTATGTAAGTTTTGTAAGTTATG
66 TATTTATGTATTATGTAAGTTGTGTAAGTTATG
25693207 TAAGTTATTA
Statistics
Matches: 93, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
111 1 0.01
112 25 0.27
113 67 0.72
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (112 bp):
TATGAAATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATTTATGATATA
TATTTATGTATTATGTAAGTTGTGTAAGTTATGATATGATACATATT
Found at i:25693170 original size:13 final size:13
Alignment explanation
Indices: 25693152--25693181 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
25693142 TAAGTTATGA
25693152 TATGATATATATT
1 TATGATATATATT
25693165 TATGATATATATT
1 TATGATATATATT
25693178 TATG
1 TATG
25693182 TATTATGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (13 bp):
TATGATATATATT
Found at i:25693201 original size:9 final size:9
Alignment explanation
Indices: 25693184--25693214 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
25693174 TATTTATGTA
25693184 TTATGTAAG
1 TTATGTAAG
*
25693193 TTTTGTAAG
1 TTATGTAAG
25693202 TTATGTAAG
1 TTATGTAAG
25693211 TTAT
1 TTAT
25693215 TATATGATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.29, C:0.00, G:0.19, T:0.52
Consensus pattern (9 bp):
TTATGTAAG
Found at i:25693665 original size:37 final size:37
Alignment explanation
Indices: 25693621--25693711 Score: 104
Period size: 36 Copynumber: 2.5 Consensus size: 37
25693611 AAATTATATT
*
25693621 AATTGATAAATATTGAAATAT-TG-AAAT-ATATTTAA
1 AATTGATAAATATTGAAATATAAGCAAATCAT-TTTAA
25693656 AATGTTGAT-AA-A-TGAAATATAAGCAAATCATTTTAA
1 AA--TTGATAAATATTGAAATATAAGCAAATCATTTTAA
25693692 AATTGATAAATATTGAAATA
1 AATTGATAAATATTGAAATA
25693712 CATTAAAGCA
Statistics
Matches: 47, Mismatches: 1, Indels: 14
0.76 0.02 0.23
Matches are distributed among these distances:
34 13 0.28
35 6 0.13
36 14 0.30
37 14 0.30
ACGTcount: A:0.52, C:0.02, G:0.10, T:0.36
Consensus pattern (37 bp):
AATTGATAAATATTGAAATATAAGCAAATCATTTTAA
Found at i:25695701 original size:59 final size:59
Alignment explanation
Indices: 25695601--25695730 Score: 174
Period size: 59 Copynumber: 2.2 Consensus size: 59
25695591 TTTCAAATTG
* * * *
25695601 GGGAGAAAGGGGTAATTATTTTAGGGTTTCAAATTAAGGAAAATGGAGGGA-ATAAACTA
1 GGGAGAAGGGGGTAATTATTTTAGGGATTCAAATGAAGGAAAATGG-GGGAGATAAACCA
* *
25695660 GGGAGAAGGGGGTGATTATTTTAGGGATTCGAA-GAAGGGAAAATGGGGGAGATAAACCA
1 GGGAGAAGGGGGTAATTATTTTAGGGATTCAAATGAA-GGAAAATGGGGGAGATAAACCA
25695719 GGGAGAAGGGGG
1 GGGAGAAGGGGG
25695731 AACTCGGTGT
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
58 6 0.10
59 57 0.90
ACGTcount: A:0.37, C:0.04, G:0.39, T:0.20
Consensus pattern (59 bp):
GGGAGAAGGGGGTAATTATTTTAGGGATTCAAATGAAGGAAAATGGGGGAGATAAACCA
Found at i:25696325 original size:114 final size:113
Alignment explanation
Indices: 25695808--25696330 Score: 506
Period size: 114 Copynumber: 4.6 Consensus size: 113
25695798 CGACGTTTTC
* * * *
25695808 ACCTAGCGCCGCTAAAGGCAAACCAATTGCGGCGTTTTAACAT-AAACGCCACTAAAAA-ACAAA
1 ACCTTGCGCCGCTAAAGGCAAACCTATTGCGGCGTTTTAACCTAAAACGCCACTAAAAATCCAAA
* * *
25695871 CAAAATGACACCGTTTTGATATAAACAGAATAAACTTTAGTGGCGTTT-T
66 -AAACT-ACACCGTTTTGATATAAACAAAATAACCTTTAGTGGCGTTTAT
* * * * * *
25695920 -TCTGTAGCGCCGCTAAAGGCAAATCAATTGCGGCGTTTCACCCTAAAACGCCACTAAAAAACCA
1 ACCT-T-GCGCCGCTAAAGGCAAACCTATTGCGGCGTTTTAACCTAAAACGCCACTAAAAATCC-
* * * * * *
25695984 AAAAGAACGACGA-TGTTTTCATATGAACAGAATAACATTTAGTGGCGTTTTAT
63 AAAA-AACTAC-ACCGTTTTGATATAAACAAAATAACCTTTAGTGGCG-TTTAT
** * * * *
25696037 CACCAAGCGCCGCTAAAGGCGAAA-CTATTCCGGCGTTTT-ACCTTAAAACACCACTAATAATCG
1 -ACCTTGCGCCGCTAAAGGC-AAACCTATTGCGGCGTTTTAACC-TAAAACGCCACTAAAAATCC
* * *
25696100 AATAAAACTACATCGTTTTGATATAAACAAATTAACCATTAGTGGCGTTTAT
63 AA-AAAACTACACCGTTTTGATATAAACAAAATAACCTTTAGTGGCGTTTAT
* * * * *
25696152 ACCTTAGCGCCACTAAA-TCAAACCTATTGTGGCGTTTGAACCAAAAACGCCACTAAAAATCCAT
1 ACCTT-GCGCCGCTAAAGGCAAACCTATTGCGGCGTTTTAACCTAAAACGCCACTAAAAATCCA-
* *
25696216 AAAAACTACACCGTTTTGATCTAAACAAAATAACCCTTAGTGGCGTTTAT
64 AAAAACTACACCGTTTTGATATAAACAAAATAACCTTTAGTGGCGTTTAT
* * *
25696266 AACCTTGCGCCGCTAAA-TCAACCCTATTGTGGCGTTTTAACCTAAAACGCCACTAAAAATCCAA
1 -ACCTTGCGCCGCTAAAGGCAAACCTATTGCGGCGTTTTAACCTAAAACGCCACTAAAAATCCAA
25696330 A
65 A
25696331 GAAAACGGTG
Statistics
Matches: 339, Mismatches: 52, Indels: 39
0.79 0.12 0.09
Matches are distributed among these distances:
111 2 0.01
113 39 0.12
114 146 0.43
115 58 0.17
116 45 0.13
117 45 0.13
118 3 0.01
119 1 0.00
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (113 bp):
ACCTTGCGCCGCTAAAGGCAAACCTATTGCGGCGTTTTAACCTAAAACGCCACTAAAAATCCAAA
AAACTACACCGTTTTGATATAAACAAAATAACCTTTAGTGGCGTTTAT
Found at i:25697229 original size:16 final size:17
Alignment explanation
Indices: 25697208--25697240 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
25697198 ATAGTTTAGT
25697208 GTTTAGTG-TTTAGGGG
1 GTTTAGTGTTTTAGGGG
25697224 GTTTAGTGTTTTAGGGG
1 GTTTAGTGTTTTAGGGG
25697241 TTATAGACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.12, C:0.00, G:0.42, T:0.45
Consensus pattern (17 bp):
GTTTAGTGTTTTAGGGG
Found at i:25697243 original size:45 final size:45
Alignment explanation
Indices: 25697181--25697288 Score: 137
Period size: 45 Copynumber: 2.4 Consensus size: 45
25697171 TGGGGTTTAA
** **
25697181 TTAGGGTTTTAAAGGTTATAGTTTAGTGTTTA-GTGTTTAGGGGGT
1 TTAGGGTTTTAGGGGTTATAGACTAGTGTTTATGT-TTTAGGGGGT
* **
25697226 TTAGTGTTTTAGGGGTTATAGACTAGTGTTTATGTTTTTTGGGGT
1 TTAGGGTTTTAGGGGTTATAGACTAGTGTTTATGTTTTAGGGGGT
25697271 TTAGGGTTTTAGGGGTTA
1 TTAGGGTTTTAGGGGTTA
25697289 AATGACTTTT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
45 52 0.96
46 2 0.04
ACGTcount: A:0.18, C:0.01, G:0.33, T:0.48
Consensus pattern (45 bp):
TTAGGGTTTTAGGGGTTATAGACTAGTGTTTATGTTTTAGGGGGT
Found at i:25697352 original size:41 final size:41
Alignment explanation
Indices: 25697295--25697586 Score: 268
Period size: 41 Copynumber: 7.1 Consensus size: 41
25697285 GTTAAATGAC
*
25697295 TTTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGGT
* * *
25697336 TTTTAGTGGCGTTTTA-CACAAAGCGCCGCTAATT-CTTTGGT
1 TTTTAGCGGCGTTTTACCA-AAAACGCCGCT-ATTGCTCTGGT
* * * * * *
25697377 TTTTAGTGGCGTTTTACCAAAAGCGCCACTAATGCTTTGGC
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGGT
**** * * *
25697418 TTTTAGCGGCGTTTTTGGTAAAACGCCACTATTGCTATGTT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGGT
* ** * * **
25697459 TTTTGGCGGCGTTTT-CTGTAAAACGCCGCTATTTCTATAAT
1 TTTTAGCGGCGTTTTAC-CAAAAACGCCGCTATTGCTCTGGT
25697500 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCT-GT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGGT
****
25697540 TTTTAGCGGCGTTTTTGGTAAAACGCCGCTATTGCTCTGCGT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTG-GT
25697582 TTTTA
1 TTTTA
25697587 CAATTTTTGC
Statistics
Matches: 210, Mismatches: 33, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
40 39 0.19
41 159 0.76
42 12 0.06
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.38
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGGT
Found at i:25697462 original size:123 final size:122
Alignment explanation
Indices: 25697294--25697586 Score: 336
Period size: 123 Copynumber: 2.4 Consensus size: 122
25697284 GGTTAAATGA
**** * * *
25697294 CTTTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCTCTGGTTTTTAGTGGCGTTTTAC-ACAAA
1 CTTTTAGCGGCGTTTTTGGTAAAACGCCGCTATTGCTATGGTTTTTAGCGGCGTTTT-CTACAAA
* * ** * * *
25697358 GCGCCGCTAATTCTTTGGTTTTTAGTGGCGTTTTACCAAAAGCGCCACTAATGCTTTGG
65 ACGCCGCTAATTCTATAATTTTTAGCGGCGTTTTACCAAAAACGCCACTAATGCTCT-G
* * * **
25697417 CTTTTAGCGGCGTTTTTGGTAAAACGCCACTATTGCTATGTTTTTTGGCGGCGTTTTCTGTAAAA
1 CTTTTAGCGGCGTTTTTGGTAAAACGCCGCTATTGCTATGGTTTTTAGCGGCGTTTTCTACAAAA
* * *
25697482 CGCCGCTATTTCTATAATTTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTG
66 CGCCGCTAATTCTATAATTTTTAGCGGCGTTTTACCAAAAACGCCACTAATGCTCTG
* *
25697539 TTTTTAGCGGCGTTTTTGGTAAAACGCCGCTATTGCTCTGCGTTTTTA
1 CTTTTAGCGGCGTTTTTGGTAAAACGCCGCTATTGCTATG-GTTTTTA
25697587 CAATTTTTGC
Statistics
Matches: 141, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
122 39 0.28
123 102 0.72
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.38
Consensus pattern (122 bp):
CTTTTAGCGGCGTTTTTGGTAAAACGCCGCTATTGCTATGGTTTTTAGCGGCGTTTTCTACAAAA
CGCCGCTAATTCTATAATTTTTAGCGGCGTTTTACCAAAAACGCCACTAATGCTCTG
Found at i:25710713 original size:15 final size:15
Alignment explanation
Indices: 25710652--25710734 Score: 67
Period size: 15 Copynumber: 5.4 Consensus size: 15
25710642 TTACGAGATG
*
25710652 AAGATAACATGAAAACC
1 AAGATAA-A-GAAATCC
* *
25710669 AAAATAAATAAATCC
1 AAGATAAAGAAATCC
* * *
25710684 AAGACAGAGGAATCC
1 AAGATAAAGAAATCC
*
25710699 AAGATAAAGATATCC
1 AAGATAAAGAAATCC
* *
25710714 AAGGTACAGAAATCC
1 AAGATAAAGAAATCC
25710729 AAGATA
1 AAGATA
25710735 CCATATCATA
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
15 43 0.86
16 1 0.02
17 6 0.12
ACGTcount: A:0.55, C:0.16, G:0.14, T:0.14
Consensus pattern (15 bp):
AAGATAAAGAAATCC
Found at i:25718983 original size:30 final size:30
Alignment explanation
Indices: 25718949--25719005 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
25718939 GTTTTCTTGA
* *
25718949 TGCCATAGTCCAACTATGGTTTTACACAAT
1 TGCCATAGTCCAACCATGGTCTTACACAAT
* *
25718979 TGCCATGGTCCTACCATGGTCTTACAC
1 TGCCATAGTCCAACCATGGTCTTACAC
25719006 TCATAATGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.32
Consensus pattern (30 bp):
TGCCATAGTCCAACCATGGTCTTACACAAT
Found at i:25719031 original size:33 final size:33
Alignment explanation
Indices: 25718994--25719071 Score: 95
Period size: 33 Copynumber: 2.4 Consensus size: 33
25718984 TGGTCCTACC
* * *
25718994 ATGGTCTTACACTCATAATGCCATAACCTAGTT
1 ATGGTCTTACACTCAGAATGCCATAACCCAGCT
* *
25719027 ATGGTCTTATCA-TCAGGATGCCATAGCCCAGCT
1 ATGGTCTTA-CACTCAGAATGCCATAACCCAGCT
25719060 ATGGTCTTACAC
1 ATGGTCTTACAC
25719072 GTATACATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
32 2 0.05
33 34 0.89
34 2 0.05
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.31
Consensus pattern (33 bp):
ATGGTCTTACACTCAGAATGCCATAACCCAGCT
Found at i:25719233 original size:101 final size:101
Alignment explanation
Indices: 25718977--25719309 Score: 418
Period size: 101 Copynumber: 3.3 Consensus size: 101
25718967 GTTTTACACA
* ** * * * *
25718977 ATTGCCATGGTCCTACCATGGTCTTACACTCATA-ATGCCATAACCTAGTTATGGTCTTATCATC
1 ATTGCCATGGTCCAACCATGGTCTTACGTTCA-AGGTGCCATAACCAAGTTATGGTCTTTTCATT
** * *
25719041 AGGATGCCATAGCCCAGCTATGGTCTTACACGTATACATA-
65 AAAATACCATAGCCCAGCTATGGTCTTACA--T-T-CAAAC
*
25719081 TTCTGCCATGGTCCAACCATGGTCTTACGTTCAAGGTGCCATAACCAAGTTATGGTCTTTTCATT
1 AT-TGCCATGGTCCAACCATGGTCTTACGTTCAAGGTGCCATAACCAAGTTATGGTCTTTTCATT
*
25719146 AAAATACCATAGCCCAACTATGGTCTTACATTCAAAC
65 AAAATACCATAGCCCAGCTATGGTCTTACATTCAAAC
* * *
25719183 ATTGCCATGGTCTAACCATGGTCTTACGTTCAAGGTGCCATAACCCAGTTATGGTTTTTTCATTA
1 ATTGCCATGGTCCAACCATGGTCTTACGTTCAAGGTGCCATAACCAAGTTATGGTCTTTTCATTA
* * *
25719248 AAATACCATGGCGCAGCTATGGTCTTGCATTCAAAC
66 AAATACCATAGCCCAGCTATGGTCTTACATTCAAAC
*
25719284 ATTGCCATGGTCCAACTATGGTCTTA
1 ATTGCCATGGTCCAACCATGGTCTTA
25719310 TCCATCAATT
Statistics
Matches: 203, Mismatches: 23, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
101 119 0.59
102 2 0.01
103 1 0.00
104 2 0.01
105 79 0.39
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.32
Consensus pattern (101 bp):
ATTGCCATGGTCCAACCATGGTCTTACGTTCAAGGTGCCATAACCAAGTTATGGTCTTTTCATTA
AAATACCATAGCCCAGCTATGGTCTTACATTCAAAC
Found at i:25728100 original size:40 final size:40
Alignment explanation
Indices: 25728043--25728122 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
25728033 CGTAAACTCA
** * *
25728043 TGTGTAACCCAGTAGAATTAGACATGCAGACATACAGATT
1 TGTGTAACCCAACAGAATTAGACATACAAACATACAGATT
*
25728083 TGTGTAACCCAACAGAATTAGACATACAAATATACAGATT
1 TGTGTAACCCAACAGAATTAGACATACAAACATACAGATT
25728123 ATCTAACATC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.25
Consensus pattern (40 bp):
TGTGTAACCCAACAGAATTAGACATACAAACATACAGATT
Found at i:25732769 original size:75 final size:75
Alignment explanation
Indices: 25732646--25732947 Score: 595
Period size: 75 Copynumber: 4.0 Consensus size: 75
25732636 TAATTAATTT
25732646 AAACATATCAACATCACAAATGTTCATATACTTGTTCATAATAACAACAACAAAATTAAAAGGAT
1 AAACATATCAACATCACAAATGTTCATATACTTGTTCATAATAACAACAACAAAATTAAAAGGAT
25732711 AGGGAACAAG
66 AGGGAACAAG
25732721 AAACATATCAACATCACAAATGTTCATATACTTGTTCATAATAACAACAACAAAATTAAAAGGAT
1 AAACATATCAACATCACAAATGTTCATATACTTGTTCATAATAACAACAACAAAATTAAAAGGAT
25732786 AGGGAACAAG
66 AGGGAACAAG
25732796 AAACATATCAACATCACAAATGTTCATATACTTGTTCATAATAACAACAACAAAATTAAAAGGAT
1 AAACATATCAACATCACAAATGTTCATATACTTGTTCATAATAACAACAACAAAATTAAAAGGAT
25732861 AGGGAACAAG
66 AGGGAACAAG
25732871 AAACATATCAACATCACAAATGTTCATATACTTGTTCATAATAACAACAACAAAATTAAAAGGAT
1 AAACATATCAACATCACAAATGTTCATATACTTGTTCATAATAACAACAACAAAATTAAAAGGAT
*
25732936 AGGGAGCAAG
66 AGGGAACAAG
25732946 AA
1 AA
25732948 TTGTAACACC
Statistics
Matches: 226, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 226 1.00
ACGTcount: A:0.51, C:0.16, G:0.11, T:0.23
Consensus pattern (75 bp):
AAACATATCAACATCACAAATGTTCATATACTTGTTCATAATAACAACAACAAAATTAAAAGGAT
AGGGAACAAG
Found at i:25738418 original size:13 final size:13
Alignment explanation
Indices: 25738402--25738427 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25738392 TTTTTTATTT
25738402 TTAACATAAAATA
1 TTAACATAAAATA
25738415 TTAACATAAAATA
1 TTAACATAAAATA
25738428 ATTATAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:25745154 original size:40 final size:40
Alignment explanation
Indices: 25744942--25745147 Score: 288
Period size: 40 Copynumber: 5.2 Consensus size: 40
25744932 AACCCAAGTA
* * * *
25744942 CCTTCGGAATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* * * *
25744981 CCTTCGGGACATAGCCCGAATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* * *
25745021 CCTTCGGGACTTAGCCAGGATAGAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
25745061 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
25745101 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
25745141 CCTTCGG
1 CCTTCGG
25745148 ATCTTAGTCC
Statistics
Matches: 144, Mismatches: 22, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 11 0.08
40 133 0.92
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:25745154 original size:80 final size:80
Alignment explanation
Indices: 25744942--25745147 Score: 333
Period size: 80 Copynumber: 2.6 Consensus size: 80
25744932 AACCCAAGTA
* * * * *
25744942 CCTTCGGAATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGACATAGCCCGAATATAA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
25745006 TCACTAGCACAAATG
66 TCACTAGCACAAATG
* *
25745021 CCTTCGGGACTTAGCCAGGATAGAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
25745086 TCACTAGCACAAATG
66 TCACTAGCACAAATG
*
25745101 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGG
25745148 ATCTTAGTCC
Statistics
Matches: 116, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
79 12 0.10
80 104 0.90
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
TCACTAGCACAAATG
Found at i:25746683 original size:13 final size:13
Alignment explanation
Indices: 25746667--25746692 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25746657 TTTTTTATTT
25746667 TTAACATAAAATA
1 TTAACATAAAATA
25746680 TTAACATAAAATA
1 TTAACATAAAATA
25746693 ATTATAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:25749542 original size:13 final size:13
Alignment explanation
Indices: 25749504--25749542 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
25749494 CTCGATAGGA
*
25749504 ACACACCCGTGTG
1 ACACGCCCGTGTG
*
25749517 ACACGCCCATGTG
1 ACACGCCCGTGTG
*
25749530 ACACGCCTGTGTG
1 ACACGCCCGTGTG
25749543 TGGAAGTCCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.21, C:0.36, G:0.26, T:0.18
Consensus pattern (13 bp):
ACACGCCCGTGTG
Found at i:25754541 original size:150 final size:150
Alignment explanation
Indices: 25754270--25754569 Score: 591
Period size: 150 Copynumber: 2.0 Consensus size: 150
25754260 TCAAGCTCCT
*
25754270 TGTCATATTCGGCCATAAGCTAGCATAATGAGACTTTAATAAGTTAAATTTGTTTGAATTAGCTC
1 TGTCATATTCGGCCATAAGCTAGCATAATGAGACTTTAAGAAGTTAAATTTGTTTGAATTAGCTC
25754335 AAGAGCTTAGAGGACCACAGTTGGATAAGGGAAAGGAAAAAGTTATCGAATAGCCGCCGAAAACG
66 AAGAGCTTAGAGGACCACAGTTGGATAAGGGAAAGGAAAAAGTTATCGAATAGCCGCCGAAAACG
25754400 TTCGACCACATCCGAGGTAA
131 TTCGACCACATCCGAGGTAA
25754420 TGTCATATTCGGCCATAAGCTAGCATAATGAGACTTTAAGAAGTTAAATTTGTTTGAATTAGCTC
1 TGTCATATTCGGCCATAAGCTAGCATAATGAGACTTTAAGAAGTTAAATTTGTTTGAATTAGCTC
25754485 AAGAGCTTAGAGGACCACAGTTGGATAAGGGAAAGGAAAAAGTTATCGAATAGCCGCCGAAAACG
66 AAGAGCTTAGAGGACCACAGTTGGATAAGGGAAAGGAAAAAGTTATCGAATAGCCGCCGAAAACG
25754550 TTCGACCACATCCGAGGTAA
131 TTCGACCACATCCGAGGTAA
25754570 GTTTTCGAGC
Statistics
Matches: 149, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 149 1.00
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (150 bp):
TGTCATATTCGGCCATAAGCTAGCATAATGAGACTTTAAGAAGTTAAATTTGTTTGAATTAGCTC
AAGAGCTTAGAGGACCACAGTTGGATAAGGGAAAGGAAAAAGTTATCGAATAGCCGCCGAAAACG
TTCGACCACATCCGAGGTAA
Found at i:25754843 original size:40 final size:40
Alignment explanation
Indices: 25754788--25755045 Score: 326
Period size: 40 Copynumber: 6.5 Consensus size: 40
25754778 CAGATGATAA
* * * *
25754788 CCGGGCTAAGTCCCGAAAGCATTTGTGCTAG-TGGCTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCT-ACTATA-T
* *
25754828 CCGGGTTAAGTCCCGAAGGCATTCGTGCAAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
*
25754868 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTTTAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
*
25754908 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
* *
25754948 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
* * *
25754988 CCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTA-CTATAT
* *
25755028 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
25755046 TACTTGGCTT
Statistics
Matches: 196, Mismatches: 19, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 15 0.08
40 179 0.91
41 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
Found at i:25760628 original size:75 final size:75
Alignment explanation
Indices: 25760500--25760647 Score: 260
Period size: 75 Copynumber: 2.0 Consensus size: 75
25760490 ATCTACCTTT
* * *
25760500 GATTGAGTTCGCTTACAACAATAGTTTTCAGTCAAGCATTAAGATGGCGCCTTACGAGGCTTTGT
1 GATTGAATTCGCTTACAACAATAGTTTTCAATCAAGCATTAAGATGGCACCTTACGAGGCTTTGT
25760565 ACGGTCGACA
66 ACGGTCGACA
*
25760575 GATTGAATTCGCTTACAACAATAGTTTTCAATCAAGTATTAAGATGGCACCTTACGAGGCTTTGT
1 GATTGAATTCGCTTACAACAATAGTTTTCAATCAAGCATTAAGATGGCACCTTACGAGGCTTTGT
25760640 ACGGTCGA
66 ACGGTCGA
25760648 AAATGCCATA
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 69 1.00
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.30
Consensus pattern (75 bp):
GATTGAATTCGCTTACAACAATAGTTTTCAATCAAGCATTAAGATGGCACCTTACGAGGCTTTGT
ACGGTCGACA
Found at i:25766289 original size:79 final size:80
Alignment explanation
Indices: 25766120--25766309 Score: 276
Period size: 79 Copynumber: 2.4 Consensus size: 80
25766110 TAGCTAGTGC
* *
25766120 CTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATTCCGGGCTAAGTCCCGAAGG
1 CTAATACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATACCGGGCTAAGTCCCGAAGG
*
25766185 CATTTGTACGAGCTA
66 CATTTGTACAAGCTA
* * * *
25766200 CTAATTCCGGGCTAAGTCCCGAAGGCTTTTGTGCGAGTTA-TTATACCGGGCTAAGTCCCGAAGG
1 CTAATACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATACCGGGCTAAGTCCCGAAGG
* *
25766264 CATTTGTGCAAGTTA
66 CATTTGTACAAGCTA
25766279 CT-ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 CTAAT-ACCGGGCTAAGTCCCGAAGGCATTTG
25766310 AGCTAGTGGC
Statistics
Matches: 100, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
78 2 0.02
79 60 0.60
80 38 0.38
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (80 bp):
CTAATACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATACCGGGCTAAGTCCCGAAGG
CATTTGTACAAGCTA
Found at i:25766323 original size:40 final size:40
Alignment explanation
Indices: 25766082--25766332 Score: 206
Period size: 40 Copynumber: 6.3 Consensus size: 40
25766072 TGTTCGGATG
*
25766082 ATAACCGGGCTAAGTCCCG-AGAGCATATT-AGCTAGT-GCCT
1 ATAACCGGGCTAAGTCCCGAAG-GCAT-TTGTGCTAGTAG-CT
*
25766122 A-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGCT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAGCT
*
25766159 ACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTAC--G-AGCT
1 A-TAA--CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAGCT
* * *
25766199 ACTAATTCCGGGCTAAGTCCCGAAGGCTTTTGTGCGAGTTA-TT
1 A-TAA--CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TAGCT
*
25766242 AT-ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-CT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TAGCT
* *
25766281 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAGCT
*
25766321 ATATCC-GGCTAA
1 ATAACCGGGCTAA
25766333 ACTCCGAAGG
Statistics
Matches: 183, Mismatches: 14, Indels: 29
0.81 0.06 0.13
Matches are distributed among these distances:
37 3 0.02
38 2 0.01
39 46 0.25
40 124 0.68
41 3 0.02
42 2 0.01
43 2 0.01
44 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAGCT
Found at i:25766342 original size:79 final size:79
Alignment explanation
Indices: 25766120--25766332 Score: 263
Period size: 79 Copynumber: 2.7 Consensus size: 79
25766110 TAGCTAGTGC
*
25766120 CTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTA-ATTCCGGGCTAAGTCCCGAAG
1 CTAATACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA-TCCGGGCTAAGTCCCGAAG
*
25766184 GCATTTGTACGAGCTA
64 GCATTTGTACAAGCTA
* * *
25766200 CTAATTCCGGGCTAAGTCCCGAAGGCTTTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGG
1 CTAATACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGG
* *
25766264 CATTTGTGCAAGTTA
65 CATTTGTACAAGCTA
* * *
25766279 CT-ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 CTAAT-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCGGGCTAA
25766333 ACTCCGAAGG
Statistics
Matches: 117, Mismatches: 12, Indels: 9
0.85 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
81 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (79 bp):
CTAATACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGC
ATTTGTACAAGCTA
Found at i:25772369 original size:22 final size:22
Alignment explanation
Indices: 25772341--25772383 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
25772331 CCATAGACAG
25772341 GACAACACATAGCCGTAAACAA
1 GACAACACATAGCCGTAAACAA
*
25772363 GACAACACATAGTCGTAAACA
1 GACAACACATAGCCGTAAACA
25772384 TCGAAGCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.26, G:0.14, T:0.12
Consensus pattern (22 bp):
GACAACACATAGCCGTAAACAA
Found at i:25772853 original size:41 final size:41
Alignment explanation
Indices: 25772792--25772914 Score: 194
Period size: 41 Copynumber: 3.0 Consensus size: 41
25772782 TAAAAGCCAC
* *
25772792 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
*
25772833 CGGTGGATCCACGATAGTCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
*
25772874 CGGTGGATCCAC-AGTCGTCAAGTAACCATGCGATCCTCAAT
1 CGGTGGATCCACGA-TCGTCAAGCAACCATGCGATCCTCAAT
25772915 TTCTTCCTCC
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
40 1 0.01
41 75 0.99
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (41 bp):
CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
Found at i:25773204 original size:27 final size:27
Alignment explanation
Indices: 25773172--25773539 Score: 291
Period size: 27 Copynumber: 13.7 Consensus size: 27
25773162 TCGGAAAATC
*
25773172 TACAAACCAAGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTTGGTAATTT
* * * *
25773199 TGCAAACCAATGGTATTTCT-ATAATTT
1 TACAAATCAAGGGTATTT-TGGTAATTT
** * *
25773226 TTGAAAGTAAAGGGTATTTCT-ATAATTT
1 TACAAA-TCAAGGGTATTT-TGGTAATTT
** *
25773254 TGGAAATCAAGGGTATTCTT-GTAATTA
1 TACAAATCAAGGGTATT-TTGGTAATTT
* *
25773281 TCCAAATCAATGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTTGGTAATTT
*
25773308 T-CTAAATCAGGGGTATTTTGGTAATTT
1 TAC-AAATCAAGGGTATTTTGGTAATTT
*
25773335 TACAAATTAAGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTTGGTAATTT
* * * *
25773362 TACAAGTCGAGGGTATTTCGATAATTT
1 TACAAATCAAGGGTATTTTGGTAATTT
** * * * * *
25773389 TACAGGTCGACGATATTTCGATAA-TT
1 TACAAATCAAGGGTATTTTGGTAATTT
*
25773415 TACAAATCAAGTGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTTGGTAATTT
* *
25773442 TACAAACCAGGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTTGGTAATTT
*
25773469 TACAAA-CTAGTGGTATTTTGGTAA-TT
1 TACAAATCAAG-GGTATTTTGGTAATTT
* * * *
25773495 TGCTAATCGAGGGTATTTTGGAAATTT
1 TACAAATCAAGGGTATTTTGGTAATTT
** *
25773522 TGTAAACCAAGGGTATTT
1 TACAAATCAAGGGTATTT
25773540 CAGTAATTCT
Statistics
Matches: 282, Mismatches: 49, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
26 41 0.15
27 215 0.76
28 26 0.09
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
TACAAATCAAGGGTATTTTGGTAATTT
Found at i:25773241 original size:28 final size:27
Alignment explanation
Indices: 25773210--25773270 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 27
25773200 GCAAACCAAT
*
25773210 GGTATTTCTATAATTTTTGAAAGTAAAG
1 GGTATTTCTATAATTTTGGAAA-TAAAG
*
25773238 GGTATTTCTATAATTTTGGAAATCAAG
1 GGTATTTCTATAATTTTGGAAATAAAG
25773265 GGTATT
1 GGTATT
25773271 CTTGTAATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 10 0.32
28 21 0.68
ACGTcount: A:0.33, C:0.05, G:0.20, T:0.43
Consensus pattern (27 bp):
GGTATTTCTATAATTTTGGAAATAAAG
Found at i:25773484 original size:107 final size:108
Alignment explanation
Indices: 25773302--25773495 Score: 275
Period size: 107 Copynumber: 1.8 Consensus size: 108
25773292 GGTATTTTGG
* * **
25773302 TAATTTTCTAAATCAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTTGGTAATTTTACAA
1 TAATTTACTAAATCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAA
*
25773367 GTCGAGGGTATTTCGATAATTTTACAGGTCGACGATATTTCGA
66 GACGAGGGTATTTCGATAATTTTACAGGTCGACGATATTTCGA
* *
25773410 TAATTTAC-AAATCAAGTGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAA
1 TAATTTACTAAATCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAA
* * *
25773474 -ACTAGTGGTATTTTGGTAATTT
66 GACGAG-GGTATTTCGATAATTT
25773496 GCTAATCGAG
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
106 3 0.04
107 65 0.87
108 7 0.09
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (108 bp):
TAATTTACTAAATCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAA
GACGAGGGTATTTCGATAATTTTACAGGTCGACGATATTTCGA
Found at i:25773486 original size:80 final size:81
Alignment explanation
Indices: 25773172--25773539 Score: 284
Period size: 80 Copynumber: 4.6 Consensus size: 81
25773162 TCGGAAAATC
* * * **
25773172 TACAAACCAAGGGTATTTTGGTAATTTTGCAAACCAATGGTATTTCT-ATAATTTTTGAAAGTAA
1 TACAAATCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT-TGATAATTTTACAAAGT-A
*
25773236 AGGGTATTTCTATAATTT
64 AGGGTATTTCGATAATTT
** * * * * *
25773254 TGGAAATCAAGGGTATTCTT-GTAATTATCCAAATCAATGGTATTTTGGTAATTTT-CTAAA-TC
1 TACAAATCAAGGGTATT-TTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTAC-AAAGT-
* * *
25773316 AGGGGTATTTTGGTAATTT
63 AAGGGTATTTCGATAATTT
* ** * * * *
25773335 TACAAATTAAGGGTATTTTGGTAATTTTACAAGTCGAGGGTATTTCGATAATTTTAC-AGGTCGA
1 TACAAATCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAAGT-AA
* *
25773399 CGATATTTCGATAA-TT
65 GGGTATTTCGATAATTT
* * * *
25773415 TACAAATCAAGTGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACT-AG
1 TACAAATCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAAGTAAG
* *
25773479 TGGTATTTTGGTAA-TT
66 -GGTATTTCGATAATTT
* * * * **
25773495 TGCTAATCGAGGGTATTTTGGAAATTTTGTAAACCAAGGGTATTT
1 TACAAATCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
25773540 CAGTAATTCT
Statistics
Matches: 226, Mismatches: 52, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
79 1 0.00
80 103 0.46
81 73 0.32
82 47 0.21
83 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (81 bp):
TACAAATCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAAGTAAG
GGTATTTCGATAATTT
Found at i:25773547 original size:107 final size:107
Alignment explanation
Indices: 25773292--25773539 Score: 263
Period size: 107 Copynumber: 2.3 Consensus size: 107
25773282 CCAAATCAAT
* * * **
25773292 GGTATTTTGGTAATTTTCTAAATCAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTTGGT
1 GGTATTTTGGAAATTTTATAAATCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGT
*
25773357 AATTTTACAAGTCGAGGGTATTTCGATAATTTTACAGGTCGAC
66 AATTTTACAAGACGAGGGTATTTCGATAATTTTACA-GTCGAC
* * * * *
25773400 GATA-TTTCGATAA-TTTACAAATCAAGTGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
1 GGTATTTTGGA-AATTTTATAAATCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGG
* * * *
25773463 TAATTTTACAA-ACTAGTGGTATTTTGGTAATTTGCTA-A-TCGAG
65 TAATTTTACAAGACGAG-GGTATTTCGATAATTT--TACAGTCGAC
* *
25773506 GGTATTTTGGAAATTTTGTAAACCAAGGGTATTT
1 GGTATTTTGGAAATTTTATAAATCAAGGGTATTT
25773540 CAGTAATTCT
Statistics
Matches: 113, Mismatches: 21, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
106 12 0.11
107 93 0.82
108 6 0.05
109 2 0.02
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.41
Consensus pattern (107 bp):
GGTATTTTGGAAATTTTATAAATCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGT
AATTTTACAAGACGAGGGTATTTCGATAATTTTACAGTCGAC
Found at i:25773566 original size:27 final size:27
Alignment explanation
Indices: 25773536--25773612 Score: 100
Period size: 27 Copynumber: 2.9 Consensus size: 27
25773526 AACCAAGGGT
*
25773536 ATTTCAGTAATTCTACCCTATAGGGGC
1 ATTTCAATAATTCTACCCTATAGGGGC
* * *
25773563 ATTTCAATAGTTCTACCCTACAGGGGT
1 ATTTCAATAATTCTACCCTATAGGGGC
* *
25773590 ATTTCAATAATACTAGCCTATAG
1 ATTTCAATAATTCTACCCTATAG
25773613 ATATGGGATT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.34
Consensus pattern (27 bp):
ATTTCAATAATTCTACCCTATAGGGGC
Found at i:25774945 original size:43 final size:41
Alignment explanation
Indices: 25774845--25774959 Score: 126
Period size: 43 Copynumber: 2.7 Consensus size: 41
25774835 GTAATTCAAT
* * *
25774845 ATCGATGCCTCTGTCCCAGACAGGGTCTTTTACTAAATCAG
1 ATCGATGCCTGTGTCCCAGACACGGTCTTATACTAAATCAG
*
25774886 ATACGATGCC-GATGTCCCAGACATGGTCTTATACATAAATCTCA-
1 AT-CGATGCCTG-TGTCCCAGACACGGTCTTATAC-TAAA--TCAG
*
25774930 ATCGAGGCCTGTGTCCCAGACACGGTCTTA
1 ATCGATGCCTGTGTCCCAGACACGGTCTTA
25774960 CACGATGTCT
Statistics
Matches: 63, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
41 2 0.03
42 27 0.43
43 28 0.44
44 3 0.05
45 3 0.05
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (41 bp):
ATCGATGCCTGTGTCCCAGACACGGTCTTATACTAAATCAG
Found at i:25779602 original size:46 final size:46
Alignment explanation
Indices: 25779535--25779893 Score: 208
Period size: 46 Copynumber: 7.7 Consensus size: 46
25779525 TGTAACCCGC
* * *
25779535 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCAT
* * *
25779581 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC--A-GGC--GTTCGCAT
* * *
25779631 -C-TCA-CGAACTCGGACTCAACTCAATGAGTTC-GGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGG-CGTTCGCAT
* *
25779674 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAG--G-C--GTTCGCAT
* * * * *
25779724 -C-TCA-CGAACTCAGACTCAGCTAAACGAGTTC-GGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGG-CGTTCGCAT
* * * * *
25779767 CCATTAGTGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC--A-GGC--GTTCGCAT
* * * *
25779817 -C-TCACG-G-ACTCGGACTCAATTCAACGAGTTCAGACGTCCGCAT
1 CCAT-AAGTGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCAT
* *
25779860 CCATAAGTGAACTCAGACTCAACTCAATGAGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
25779894 GGATGCCCAA
Statistics
Matches: 239, Mismatches: 43, Indels: 62
0.69 0.12 0.18
Matches are distributed among these distances:
42 8 0.03
43 10 0.04
44 10 0.04
45 7 0.03
46 99 0.41
47 70 0.29
48 7 0.03
49 9 0.04
50 10 0.04
51 9 0.04
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCAT
Found at i:25779653 original size:47 final size:47
Alignment explanation
Indices: 25779589--25779847 Score: 228
Period size: 47 Copynumber: 5.6 Consensus size: 47
25779579 ATCCATAAGT
*
25779589 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
25779636 GAACTCGGACTCAACTCAATGAGTTCGGA---C--GTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-C
* *
25779682 GAACTCAGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* * * * * * * * *
25779729 GAACTCAGACTCAGCTAAACGAGTTCGGACG-TTCGCATCCAT-T-AGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATCTCA-C
* *
25779775 GAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* *
25779822 GGACTCGGACTCAATTCAACGAGTTC
1 GAACTCGGACTCAACTCAACGAGTTC
25779848 AGACGTCCGC
Statistics
Matches: 163, Mismatches: 35, Indels: 28
0.72 0.15 0.12
Matches are distributed among these distances:
42 3 0.02
43 3 0.02
44 2 0.01
45 3 0.02
46 58 0.36
47 83 0.51
48 3 0.02
49 2 0.01
50 3 0.02
51 3 0.02
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:25779655 original size:93 final size:93
Alignment explanation
Indices: 25779542--25779900 Score: 540
Period size: 93 Copynumber: 3.9 Consensus size: 93
25779532 CGCCCATAAG
* * *
25779542 CGAACTCGGACTCAACTCAATGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGTTC-GGACGTTCGCATCCATAAGTGAACTCAGACTCAACTC
25779606 AACGAGCTCGGATGCCTAGTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
*
25779635 CGAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
* *
25779700 ACGAGTTCAGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* * * * *
25779728 CGAACTCAGACTCAGCTAAACGAGTTCGGACGTTCGCATCCATTAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
25779793 ACAAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* * * *
25779821 CGGACTCGGACTCAATTCAACGAGTTCAGACGTCCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
* *
25779886 ATGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
25779901 CAAATATCTG
Statistics
Matches: 240, Mismatches: 25, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
92 2 0.01
93 238 0.99
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:25795504 original size:99 final size:98
Alignment explanation
Indices: 25795322--25795553 Score: 279
Period size: 99 Copynumber: 2.3 Consensus size: 98
25795312 TCTATTGTGA
* * ** * *
25795322 GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATAC-T-TACCCAAAAACTGTGATCACGTGTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTAC--TACGTGTACCGGATAA-T-TGGTCACGTGTGT
* **
25795385 AGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTT
62 AGTACTAAGTGCAAGCTACTACGTGTACCAGATAATT
*
25795422 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACGTGTGTAGT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACGTGTGTAGT
* *
25795487 ACTAAGTGCAGGCTACTACGTGTACCGGATAATT
65 ACTAAGTGCAAGCTACTACGTGTACCAGATAATT
* *
25795521 GGTCGCATGTGTAGTACTATGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
25795554 TGCGTACCTG
Statistics
Matches: 114, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
98 30 0.26
99 47 0.41
100 2 0.02
101 35 0.31
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (98 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACGTGTGTAGTA
CTAAGTGCAAGCTACTACGTGTACCAGATAATT
Found at i:25795561 original size:49 final size:49
Alignment explanation
Indices: 25795375--25795553 Score: 277
Period size: 49 Copynumber: 3.6 Consensus size: 49
25795365 AAAACTGTGA
* * * **
25795375 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GG
25795425 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGG
25795474 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGG
* * *
25795523 TCGCATGTGTAGTACTATGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
25795554 TGCGTACCTG
Statistics
Matches: 121, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
49 79 0.65
50 42 0.35
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (49 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGG
Found at i:25798585 original size:15 final size:14
Alignment explanation
Indices: 25798565--25798618 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 14
25798555 GTATCTTGGG
25798565 TTTCTTTACTCTGGA
1 TTTCTTTA-TCTGGA
*
25798580 TTTCTTTATTCTGGG
1 TTTCTTTA-TCTGGA
*
25798595 TTTCTCTATCTTGGA
1 TTTCTTTATC-TGGA
*
25798610 TTTATTTAT
1 TTTCTTTAT
25798619 TCGGTTTTCT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
14 2 0.06
15 30 0.94
ACGTcount: A:0.13, C:0.15, G:0.13, T:0.59
Consensus pattern (14 bp):
TTTCTTTATCTGGA
Found at i:25798597 original size:30 final size:30
Alignment explanation
Indices: 25798561--25798629 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
25798551 TATCGTATCT
*
25798561 TGGGTTTCTTTA-CTCTGGATTTCTTTATTC
1 TGGGTTTCTTTATCT-TGGATTTATTTATTC
*
25798591 TGGGTTTCTCTATCTTGGATTTATTTATTC
1 TGGGTTTCTTTATCTTGGATTTATTTATTC
*
25798621 -GGTTTTCTT
1 TGGGTTTCTT
25798630 GTTATCTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 7 0.21
30 25 0.74
31 2 0.06
ACGTcount: A:0.10, C:0.14, G:0.17, T:0.58
Consensus pattern (30 bp):
TGGGTTTCTTTATCTTGGATTTATTTATTC
Found at i:25800875 original size:49 final size:51
Alignment explanation
Indices: 25800760--25800908 Score: 176
Period size: 49 Copynumber: 3.0 Consensus size: 51
25800750 TCTATTGTGA
* * * *
25800760 GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATACGTACCCGAAAACTGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGT
* * * * * * *
25800811 GATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAA-T-T
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGT
*
25800860 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAACT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACT
25800909 TTGGCTACAA
Statistics
Matches: 79, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
49 40 0.51
50 2 0.03
51 37 0.47
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (51 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGT
Found at i:25803073 original size:13 final size:13
Alignment explanation
Indices: 25803055--25803080 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25803045 TACTTACTAC
25803055 CACAATTCACAGT
1 CACAATTCACAGT
25803068 CACAATTCACAGT
1 CACAATTCACAGT
25803081 TACATCATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.31, G:0.08, T:0.23
Consensus pattern (13 bp):
CACAATTCACAGT
Found at i:25808739 original size:246 final size:246
Alignment explanation
Indices: 25808304--25808797 Score: 925
Period size: 246 Copynumber: 2.0 Consensus size: 246
25808294 CTACGACAAT
*
25808304 AATTTAAAAGGCCTTCATCCAAGCACCCAAGGTTTTATTAACTTAAAACTAAACTTTTTGCTAAA
1 AATTTAAAAAGCCTTCATCCAAGCACCCAAGGTTTTATTAACTTAAAACTAAACTTTTTGCTAAA
25808369 GCCCAGGTTTGAACCCAAGACTTTTCCAACTCCCCTCAGGACCCTTAACTACTTGAGTAGACATT
66 GCCCAGGTTTGAACCCAAGACTTTTCCAACTCCCCTCAGGACCCTTAACTACTTGAGTAGACATT
* *
25808434 TAATTGTGTCATTTCCTGACACAATTAAATACTTATATACAACCTCTTTACGGACCCACACTAAA
131 TAATTGTGTCATTTCCTGACACAATTAAATACTTATATACAACCTCCTTACGAACCCACACTAAA
25808499 GGCCCAATACTTCTAGGCCCAAATTTGGGGCGTTACAATCTACCCCCTTAA
196 GGCCCAATACTTCTAGGCCCAAATTTGGGGCGTTACAATCTACCCCCTTAA
*
25808550 AATTTAAAAAGCCTTCATCCAAGCACCCAGGGTTTTATTAACTTAAAACTAAACTTTTTGCTAAA
1 AATTTAAAAAGCCTTCATCCAAGCACCCAAGGTTTTATTAACTTAAAACTAAACTTTTTGCTAAA
*
25808615 GCCCAGGTTTGAACCCAAGACTTTTCCAACTCCTCTCAGGACCCTTAACTACTTGAGTAGACATT
66 GCCCAGGTTTGAACCCAAGACTTTTCCAACTCCCCTCAGGACCCTTAACTACTTGAGTAGACATT
* *
25808680 TAATTGTGTCATTTCCTTACACAATTAAATACTTATATACAACCTCCTTACTAACCCACACTAAA
131 TAATTGTGTCATTTCCTGACACAATTAAATACTTATATACAACCTCCTTACGAACCCACACTAAA
25808745 GGCCCAATACTTCTAGGCCCAAATTTGGGGCGTTACAATCTACCCCCTTAA
196 GGCCCAATACTTCTAGGCCCAAATTTGGGGCGTTACAATCTACCCCCTTAA
25808796 AA
1 AA
25808798 AAATTTCGTC
Statistics
Matches: 241, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
246 241 1.00
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.30
Consensus pattern (246 bp):
AATTTAAAAAGCCTTCATCCAAGCACCCAAGGTTTTATTAACTTAAAACTAAACTTTTTGCTAAA
GCCCAGGTTTGAACCCAAGACTTTTCCAACTCCCCTCAGGACCCTTAACTACTTGAGTAGACATT
TAATTGTGTCATTTCCTGACACAATTAAATACTTATATACAACCTCCTTACGAACCCACACTAAA
GGCCCAATACTTCTAGGCCCAAATTTGGGGCGTTACAATCTACCCCCTTAA
Found at i:25811788 original size:18 final size:20
Alignment explanation
Indices: 25811765--25811804 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
25811755 TGGGCCCATG
*
25811765 GGCCCAT-TGGGCCCA-CAT
1 GGCCCATCTCGGCCCATCAT
25811783 GGCCCATCTCGGCCCATCAT
1 GGCCCATCTCGGCCCATCAT
25811803 GG
1 GG
25811805 TCCAAAGTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 7 0.37
19 7 0.37
20 5 0.26
ACGTcount: A:0.15, C:0.40, G:0.28, T:0.17
Consensus pattern (20 bp):
GGCCCATCTCGGCCCATCAT
Found at i:25811948 original size:38 final size:38
Alignment explanation
Indices: 25811891--25811965 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
25811881 TACACTTGTA
*
25811891 TGGCTGCCATCGCCTTGTGAACGGCATTTCGGCATTCG
1 TGGCTGCCATCGCCATGTGAACGGCATTTCGGCATTCG
* * *
25811929 TGGCTGCCATCTCCATGTGACCGGTATTTCGGCATTC
1 TGGCTGCCATCGCCATGTGAACGGCATTTCGGCATTC
25811966 CAGCATTTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.13, C:0.29, G:0.27, T:0.31
Consensus pattern (38 bp):
TGGCTGCCATCGCCATGTGAACGGCATTTCGGCATTCG
Found at i:25818762 original size:40 final size:40
Alignment explanation
Indices: 25818718--25818901 Score: 175
Period size: 40 Copynumber: 4.7 Consensus size: 40
25818708 GCTCCTCGTT
* *
25818718 CAAATGCTTTCGGGACATAGCCCGG-TTATAGTAA-TTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTT-ACA
* *
25818758 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTACA
* * **
25818798 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTACA
* * *
25818837 CAAATGCCTTC-GGATCTTAGTCCGAATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAACTTA-CA
25818878 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25818902 CAACATTCAA
Statistics
Matches: 120, Mismatches: 17, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
38 2 0.02
39 47 0.39
40 62 0.52
41 9 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTACA
Found at i:25818819 original size:79 final size:81
Alignment explanation
Indices: 25818718--25818901 Score: 204
Period size: 79 Copynumber: 2.3 Consensus size: 81
25818708 GCTCCTCGTT
* * *
25818718 CAAATGCTTTCGGGACATAGCCCGG-TTATAGTAAT-TCACACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCACACAAATGCCTTC-GGATCTTAACC
*
25818780 CGGAT-TTAGTAACTT-GCA
63 CGAATATT-GTAACTTAGCA
* **
25818798 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCACACAAATGCCTTCGGATCTTAACCCGA
*
25818862 ATATTGTCACTTAGCA
66 ATATTGTAACTTAGCA
25818878 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25818902 CAACATTCAA
Statistics
Matches: 90, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
78 14 0.16
79 56 0.62
80 20 0.22
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCACACAAATGCCTTCGGATCTTAACCCGA
ATATTGTAACTTAGCA
Done.